BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007970
         (583 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225439751|ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Vitis vinifera]
          Length = 749

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/578 (79%), Positives = 518/578 (89%), Gaps = 9/578 (1%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLRSGYLPHVKAWS VVSRLAASGDDGP+E++KLFD V +R+ +F+D  +V+DS+PDTAA
Sbjct: 175 MLRSGYLPHVKAWSAVVSRLAASGDDGPLEALKLFDSVTRRIHRFTDATLVADSRPDTAA 234

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNAVLNACANLG  K+FLQ+F++M + GA+PDVLTYNVMIKLCAR  RK LLVFVLERIL
Sbjct: 235 YNAVLNACANLGDTKRFLQVFEEMTQLGAEPDVLTYNVMIKLCARVDRKDLLVFVLERIL 294

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI LCMTT  SLVAAYVGFGDLE AE +VQAMREGR+D+CKI+R     D +SEN G+
Sbjct: 295 DKGIQLCMTTLHSLVAAYVGFGDLETAEKLVQAMREGRQDLCKILR-----DVNSENPGN 349

Query: 181 DDDDDEVFEKLLPNSIN-PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           ++    +F+KLLPNS+   +SEPPLLPK +AP+SRIYTTLMKGYM EGRV+DTVRML AM
Sbjct: 350 NEG--YIFDKLLPNSVERNNSEPPLLPKAYAPDSRIYTTLMKGYMKEGRVTDTVRMLEAM 407

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R Q+D+ S PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR+TYNILLKGYC+Q
Sbjct: 408 RHQDDSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNILLKGYCEQ 467

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
           LQIDKAKEL+REM DD  I PDVVSYN LIDG IL+DDSAGAL +FNEMRARGIAPTKIS
Sbjct: 468 LQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTKIS 527

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YTTLMKAFALS QPKLANKVFDEMLRDPRVKVD+VAWNMLVE +CR+GLVEEAK+ ++RM
Sbjct: 528 YTTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQRM 587

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +ENGFYPNVATYGSLANGI+LARKPGEALLLW E+KERC VK+EG  + S  PPPLKPDE
Sbjct: 588 RENGFYPNVATYGSLANGIALARKPGEALLLWNEVKERCVVKEEGEISKSS-PPPLKPDE 646

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
            LLD LADICVRAAFFRKALEIVACMEE+GIPPNK+KY +IYVEMHSRMFTSKHAS+ARQ
Sbjct: 647 GLLDTLADICVRAAFFRKALEIVACMEENGIPPNKSKYTRIYVEMHSRMFTSKHASKARQ 706

Query: 540 DRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGDEY 577
           DRR ERKRAAEAFKFWLGLPNSYYGSEWRL+P+DGD+Y
Sbjct: 707 DRRSERKRAAEAFKFWLGLPNSYYGSEWRLEPIDGDDY 744


>gi|449440377|ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
 gi|449483612|ref|XP_004156638.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
          Length = 736

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/580 (76%), Positives = 509/580 (87%), Gaps = 11/580 (1%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLRSGYLPHVKAWS VVSRLAAS DDGP E++KLF +V +R+R+F+DP I +DS+PDTAA
Sbjct: 162 MLRSGYLPHVKAWSAVVSRLAASPDDGPAEAIKLFSLVTQRLRRFADPTITADSRPDTAA 221

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN VLNACAN+G  +KFLQLF++M EFGA+PDVLTYNVMIKLCARA+RK L+V+VLE IL
Sbjct: 222 YNGVLNACANMGAYEKFLQLFEEMEEFGAEPDVLTYNVMIKLCARANRKDLIVYVLEAIL 281

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE--LD-LEDYSSEN 177
              I +CMTT  S+VAAYVGFGDLE AE +VQAMREG+RD+C+I+R+  LD +ED    N
Sbjct: 282 AKDIPMCMTTLHSVVAAYVGFGDLETAEKVVQAMREGKRDICRILRDGYLDEIEDVEDLN 341

Query: 178 EGDDDDDDEVFEKLLPNSINPS--SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E    D+DE+F+KLLPN +N    SEPPLLPK ++PNSRIYTTLMKGYMNEGRV DT+RM
Sbjct: 342 E----DEDELFKKLLPN-LNEEIDSEPPLLPKIYSPNSRIYTTLMKGYMNEGRVGDTIRM 396

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L AMR Q D +SHPDHV+YTTVVSALVKAGSMDRARQVLAEMTRIG PANRITYNILLKG
Sbjct: 397 LEAMRNQGDRSSHPDHVSYTTVVSALVKAGSMDRARQVLAEMTRIGCPANRITYNILLKG 456

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+ LQ+DKAK+L +EM D A IEPDVVSYNI+IDG IL+DDSAGAL FFNEMR++GIAP
Sbjct: 457 YCRLLQMDKAKDLFKEMVDGAGIEPDVVSYNIMIDGSILVDDSAGALGFFNEMRSKGIAP 516

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           TK+SYTTLMKAFA S QPKLA KVFDEML DPRVKVDIVAWNML+EGYCR+G +EEAK++
Sbjct: 517 TKVSYTTLMKAFAQSGQPKLARKVFDEMLNDPRVKVDIVAWNMLIEGYCRLGWIEEAKQL 576

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +++MKENGF+P+V+TYGSLANGISLARKPGEALLLW E+KERC V++ G  +DS  PPPL
Sbjct: 577 VQKMKENGFFPDVSTYGSLANGISLARKPGEALLLWNEVKERCAVRR-GYKSDSSSPPPL 635

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
           KPDE LLD LADICVRAAFFRKALEIVACMEE+GIPPNKTKY +IYVEMHSRMFTSKHAS
Sbjct: 636 KPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKYSRIYVEMHSRMFTSKHAS 695

Query: 536 QARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGD 575
           +ARQDRR E+KRAAEAFKFWLGLPNSYYGSEW  +P D D
Sbjct: 696 KARQDRRIEKKRAAEAFKFWLGLPNSYYGSEWGWEPSDRD 735


>gi|15232734|ref|NP_187576.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204290|sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09650, chloroplastic; AltName: Full=Protein HIGH
           CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor
 gi|6682243|gb|AAF23295.1|AC016661_20 hypothetical protein [Arabidopsis thaliana]
 gi|332641272|gb|AEE74793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 778

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/597 (72%), Positives = 497/597 (83%), Gaps = 26/597 (4%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RSGYLPHVKAW+  V+ L+ASGDDGP ES+KLF  + +RV++F D  +V  S+PDTAA
Sbjct: 179 MIRSGYLPHVKAWTAAVASLSASGDDGPEESIKLFIAITRRVKRFGDQSLVGQSRPDTAA 238

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NAVLNACANLG   K+ +LF++M E+  +PDVLTYNVMIKLCAR  RK L+VFVLERI+
Sbjct: 239 FNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERII 298

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL---------- 170
           + GI +CMTT  SLVAAYVGFGDL  AE IVQAMRE RRD+CK++RE +           
Sbjct: 299 DKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEE 358

Query: 171 -------------EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                          YS+ +E  ++   +VF+KLLPNS++PS EPPLLPK FAP+SRIYT
Sbjct: 359 AEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYT 418

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TLMKGYM  GRV+DT RML AMRRQ+D  SHPD VTYTTVVSA V AG MDRARQVLAEM
Sbjct: 419 TLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEM 478

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            R+GVPANRITYN+LLKGYC+QLQID+A++LLREM +DA IEPDVVSYNI+IDG ILIDD
Sbjct: 479 ARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDD 538

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
           SAGAL FFNEMR RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AWN
Sbjct: 539 SAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWN 598

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           MLVEGYCR+GL+E+A+R++ RMKENGFYPNVATYGSLANG+S ARKPG+ALLLWKEIKER
Sbjct: 599 MLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKER 658

Query: 458 CEVKKEGVNADSD---LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           C VKK+   +DS     PP LKPDE LLD LADICVRAAFF+KALEI+ACMEE+GIPPNK
Sbjct: 659 CAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNK 718

Query: 515 TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP 571
           TKYKKIYVEMHSRMFTSKHASQAR DRR ERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 719 TKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 775


>gi|297829500|ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata]
 gi|297328472|gb|EFH58891.1| HCF152 [Arabidopsis lyrata subsp. lyrata]
          Length = 772

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/598 (72%), Positives = 503/598 (84%), Gaps = 27/598 (4%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RSGYLPHVKAW+  V+ L+A+GDDGP ES+KLF  + +RV++F D  +V+ S+PDTAA
Sbjct: 172 MIRSGYLPHVKAWTAAVASLSAAGDDGPEESIKLFTAITRRVKRFGDQSLVAQSRPDTAA 231

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NAVLNACANLG  +K+ +LFD+M E+  +PDVLTYNVMIKLCAR  RK L+V+VLERI+
Sbjct: 232 FNAVLNACANLGDTEKYWKLFDEMSEWDCEPDVLTYNVMIKLCARVDRKELIVYVLERII 291

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL---------- 170
           + GI +CMTT  SLVAAYVGFGDL  AE IVQAMRE RRD+CK++RE +           
Sbjct: 292 DKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEE 351

Query: 171 --------------EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
                           YS+ +E  ++  ++VF+KLLPNS++PS +PPLLPK FAP+SRIY
Sbjct: 352 AAEDDEDAFEDDEDSGYSARDEVSEEGFEDVFKKLLPNSVDPSGDPPLLPKVFAPDSRIY 411

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           TTLMKGYM  GRV+DT RML AMRRQ+D  SHPD VTYTTVVSA VKAG MDRARQVLAE
Sbjct: 412 TTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVKAGLMDRARQVLAE 471

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R+GVPANRITYN+LLKGYC+QLQID+A++LLREMA+DA IEPDVVSYNI+IDG ILID
Sbjct: 472 MARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMAEDAGIEPDVVSYNIIIDGCILID 531

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           DSAGAL FFNEMR RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AW
Sbjct: 532 DSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAW 591

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           NMLVEGYCR+GL+E+A+R++ RMKENGFYPNVATYGSLANG+SLARKPGEALLLWKEIKE
Sbjct: 592 NMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSLARKPGEALLLWKEIKE 651

Query: 457 RCEVKKEGVNADSDLPPP---LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           RCEVKK+   +DS   P    LKPDE LLD LADICVRAAFF+KALEI+ACMEE+GIPPN
Sbjct: 652 RCEVKKKEAPSDSSSDPSPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPN 711

Query: 514 KTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP 571
           KTKYKKIYVEMHSRMFTSKHASQAR DRR ERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 712 KTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 769


>gi|297741482|emb|CBI32614.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/577 (75%), Positives = 485/577 (84%), Gaps = 52/577 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLRSGYLPHVKAWS VVSRLAASGDDGP+E++KLFD V +R+ +F+D  +V+DS+PDTAA
Sbjct: 183 MLRSGYLPHVKAWSAVVSRLAASGDDGPLEALKLFDSVTRRIHRFTDATLVADSRPDTAA 242

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNAVLNACANLG  K+FLQ+F++M + GA+PDVLTYNVMIKLCAR  RK LLVFVLERIL
Sbjct: 243 YNAVLNACANLGDTKRFLQVFEEMTQLGAEPDVLTYNVMIKLCARVDRKDLLVFVLERIL 302

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI LCMTT  SLVAAYVGFGDLE AE +VQAMREGR+D+CKI+R++            
Sbjct: 303 DKGIQLCMTTLHSLVAAYVGFGDLETAEKLVQAMREGRQDLCKILRDV------------ 350

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                        NS NP+         +AP+SRIYTTLMKGYM EGRV+DTVRML AMR
Sbjct: 351 -------------NSENPA---------YAPDSRIYTTLMKGYMKEGRVTDTVRMLEAMR 388

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            Q+D+ S PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR+TYNILLKGYC+QL
Sbjct: 389 HQDDSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNILLKGYCEQL 448

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           QIDKAKEL+REM DD  I PDVVSYN LIDG IL+DDSAGAL +FNEMRARGIAPTKISY
Sbjct: 449 QIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTKISY 508

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTLMKAFALS QPKLANKVFDEMLRDPRVKVD+VAWNMLVE +CR+GLVEEAK+ ++RM+
Sbjct: 509 TTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQRMR 568

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           ENGFYPNVATYGSLANGI+LARKPGEALLLW E+KERC                  PDE 
Sbjct: 569 ENGFYPNVATYGSLANGIALARKPGEALLLWNEVKERC------------------PDEG 610

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
           LLD LADICVRAAFFRKALEIVACMEE+GIPPNK+KY +IYVEMHSRMFTSKHAS+ARQD
Sbjct: 611 LLDTLADICVRAAFFRKALEIVACMEENGIPPNKSKYTRIYVEMHSRMFTSKHASKARQD 670

Query: 541 RRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGDEY 577
           RR ERKRAAEAFKFWLGLPNSYYGSEWRL+P+DGD+Y
Sbjct: 671 RRSERKRAAEAFKFWLGLPNSYYGSEWRLEPIDGDDY 707


>gi|62320586|dbj|BAD95223.1| hypothetical protein [Arabidopsis thaliana]
          Length = 778

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/597 (72%), Positives = 496/597 (83%), Gaps = 26/597 (4%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RSG LPHVKAW+  V+ L+ASGD+GP ES+KLF  + +RV++F D  +V  S+PDTAA
Sbjct: 179 MIRSGCLPHVKAWTAAVASLSASGDNGPEESIKLFIAITRRVKRFGDQSLVGQSRPDTAA 238

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NAVLNACANLG   K+ +LF++M E+  +PDVLTYNVMIKLCAR  RK L+VFVLERI+
Sbjct: 239 FNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERII 298

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL---------- 170
           + GI +CMTT  SLVAAYVGFGDL  AE IVQAMRE RRD+CK++RE +           
Sbjct: 299 DKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEE 358

Query: 171 -------------EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                          YS+ +E  ++   +VF+KLLPNS++PS EPPLLPK FAP+SRIYT
Sbjct: 359 AEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYT 418

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TLMKGYM  GRV+DT RML AMRRQ+D  SHPD VTYTTVVSA V AG MDRARQVLAEM
Sbjct: 419 TLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEM 478

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            R+GVPANRITYN+LLKGYC+QLQID+A++LLREM +DA IEPDVVSYNI+IDG ILIDD
Sbjct: 479 ARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDD 538

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
           SAGAL FFNEMR RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AWN
Sbjct: 539 SAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWN 598

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           MLVEGYCR+GL+E+A+R++ RMKENGFYPNVATYGSLANG+S ARKPG+ALLLWKEIKER
Sbjct: 599 MLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKER 658

Query: 458 CEVKKEGVNADSD---LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           C VKK+   +DS     PP LKPDE LLD LADICVRAAFF+KALEI+ACMEE+GIPPNK
Sbjct: 659 CAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNK 718

Query: 515 TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP 571
           TKYKKIYVEMHSRMFTSKHASQAR DRR ERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 719 TKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 775


>gi|224138602|ref|XP_002322855.1| predicted protein [Populus trichocarpa]
 gi|222867485|gb|EEF04616.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/581 (78%), Positives = 513/581 (88%), Gaps = 6/581 (1%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLRSGYLPHVKAWS V+SRLA++ D GP  ++KLF+ + +RVR+FSD  +V+DS+PDTAA
Sbjct: 170 MLRSGYLPHVKAWSAVLSRLASAPDGGPTRALKLFNTITRRVRRFSDVTMVADSRPDTAA 229

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N VLNACANLG  K FL+LF++M +FG +PD+LTYN+MIKLCAR +RK LLVFVLER++
Sbjct: 230 FNNVLNACANLGDGKMFLKLFEEMPDFGLEPDILTYNIMIKLCARCNRKDLLVFVLERVI 289

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E GI LCMTT  SLVAAYVGFGDLE  E +VQAMREGRRD+CKI+RE +LED++ + E +
Sbjct: 290 EKGIPLCMTTLHSLVAAYVGFGDLETVERMVQAMREGRRDLCKILREANLEDFNEDEENE 349

Query: 181 DDDDDE----VFEKLLPNSINPS-SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             D  +    VFEKLLPN +  S SEPPLLPK FAP+SRI+TTLMKGYM +GRV+DTVRM
Sbjct: 350 VLDSSQIGVSVFEKLLPNLVEVSNSEPPLLPKVFAPDSRIFTTLMKGYMKQGRVTDTVRM 409

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L AMR Q+D+   PDH+TYTTV+SALVKAGSMD ARQVLAEMTRIGVPANRITYNILLKG
Sbjct: 410 LEAMRCQDDSKGQPDHITYTTVISALVKAGSMDPARQVLAEMTRIGVPANRITYNILLKG 469

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YCQQLQIDKAKELL+EMADD  IEPDVVSYN LIDG IL+DDSAGAL FFNEMR +GI P
Sbjct: 470 YCQQLQIDKAKELLKEMADDVNIEPDVVSYNTLIDGCILVDDSAGALAFFNEMRTKGIMP 529

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           TKISYTTLMKAFALS QPKLANKVFDEML+DPRVK D+VAWNML+EGYCR+GLV+EAK +
Sbjct: 530 TKISYTTLMKAFALSGQPKLANKVFDEMLKDPRVKADLVAWNMLLEGYCRLGLVDEAKTV 589

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP-PP 474
           I+RMKENGF+P+VATYGSLANGISLARKPGEALLLWKE+KER EVK EG +++SD P  P
Sbjct: 590 IQRMKENGFHPDVATYGSLANGISLARKPGEALLLWKEVKERWEVKGEGESSNSDSPLLP 649

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           LKPDEELL  LADICVRAAFF+KALEIVACMEE+GIPPNKTKYKKIYVEMHSRMFTSKHA
Sbjct: 650 LKPDEELLATLADICVRAAFFQKALEIVACMEENGIPPNKTKYKKIYVEMHSRMFTSKHA 709

Query: 535 SQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGD 575
           SQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP D D
Sbjct: 710 SQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPGDPD 750


>gi|255568420|ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535481|gb|EEF37150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 740

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/585 (75%), Positives = 510/585 (87%), Gaps = 12/585 (2%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLRSGYLPHVKAWS V+SRL++S DDGP +++KLF+ + +RVR+F+D  +V+DS PDTAA
Sbjct: 155 MLRSGYLPHVKAWSAVISRLSSSPDDGPQQAIKLFNSITRRVRRFNDAALVADSNPDTAA 214

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N+VLNACANLG  K FLQLFDQM EFGA+PD+LTYNVMIKLCAR  RK LLVFVLER++
Sbjct: 215 FNSVLNACANLGDGKMFLQLFDQMSEFGAEPDILTYNVMIKLCARCDRKDLLVFVLERVI 274

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
           +  I LCMTT  SLVAAYVGFGDLE AE + QAMREGRRD+CKI+RE+++ED        
Sbjct: 275 QKRIPLCMTTLHSLVAAYVGFGDLETAEIMAQAMREGRRDLCKILREVNMEDLGYYGEDV 334

Query: 176 -ENEGDDDDDDE---VFEKLLPNSINPS-SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            EN    D + +   VFEKLLPNSI    +EP LLPK +AP+SRIYTTLMKGYMN+GRVS
Sbjct: 335 IENSQRLDQNRKNMFVFEKLLPNSIQSGDTEPSLLPKVYAPDSRIYTTLMKGYMNQGRVS 394

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           DT+RML AMR Q+DNASHPDHV+YTTV+SALVKAGSMDRARQVLAEMTRIGVPANRITYN
Sbjct: 395 DTIRMLEAMRHQDDNASHPDHVSYTTVISALVKAGSMDRARQVLAEMTRIGVPANRITYN 454

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           ILLKG+CQ LQIDKAKELL+EM ++A+IEPDVVSYN +IDG I +DDSAGAL FFNEMR 
Sbjct: 455 ILLKGHCQHLQIDKAKELLKEMDENAEIEPDVVSYNTMIDGCIQVDDSAGALAFFNEMRE 514

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +GIAPTKISYTTLMKAF+LS QPKLAN+VFDEM +DPRVKVD++AWN+LVE YC++GLVE
Sbjct: 515 KGIAPTKISYTTLMKAFSLSGQPKLANQVFDEMFKDPRVKVDLIAWNVLVEAYCKLGLVE 574

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +AK+II+RMKENGF+PNVATYGSLA+GI+LARKPGEAL+LW E+KER E++KEG N+ SD
Sbjct: 575 QAKKIIQRMKENGFHPNVATYGSLASGIALARKPGEALILWNEVKERLEMQKEGHNSKSD 634

Query: 471 LPPP--LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
           LPPP   KPDE +LD LADICVRAA F+KALEIVACMEE+GI PNK KYKKIYVEMHSRM
Sbjct: 635 LPPPPAFKPDEGMLDTLADICVRAALFQKALEIVACMEENGIFPNKMKYKKIYVEMHSRM 694

Query: 529 FTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMD 573
           FTSKHASQAR DRRRERKRAAEAFKFWLGLPNSYYGSEW + P +
Sbjct: 695 FTSKHASQARVDRRRERKRAAEAFKFWLGLPNSYYGSEWGVGPTE 739


>gi|356536919|ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Glycine max]
          Length = 716

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/590 (73%), Positives = 501/590 (84%), Gaps = 17/590 (2%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD--DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           MLRSGYLPHVKAW+ VV+ LA+S D  DGP E+++LF  V +R+R+  DP + + S+PDT
Sbjct: 120 MLRSGYLPHVKAWTAVVACLASSPDRGDGPAEALQLFRSVTRRLRRLPDPAMAAASRPDT 179

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
           AA NA LNACANLG P+ FLQ+FD+M +F   PD L+YN MIKLC R  RK LLVFVLER
Sbjct: 180 AAVNAALNACANLGDPRAFLQVFDEMPQFNVAPDALSYNTMIKLCCRIGRKDLLVFVLER 239

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +L++ I  C+TT QSLV+AYV FGDLE AE +VQAMRE RRD+C++++E    +YSS NE
Sbjct: 240 VLQLEIPFCVTTLQSLVSAYVEFGDLETAEKLVQAMREERRDICRVLKECSNLEYSSGNE 299

Query: 179 GDDDDDDE----------VFEKLLPNSINPSS---EPPLLPKTFAPNSRIYTTLMKGYMN 225
             DDDDD+          +FEKLLPN ++ S    EPPLLPK +APN+R YTTLMKGYMN
Sbjct: 300 SSDDDDDDDDDDDDDNDCIFEKLLPNLVDQSGNEVEPPLLPKGYAPNTRTYTTLMKGYMN 359

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            GRVSDTVRML AMRR +D  S PDHV+YTTVVSALVK G+MDRARQVLAEMTRIGVPAN
Sbjct: 360 AGRVSDTVRMLEAMRRLDDKGSQPDHVSYTTVVSALVKVGAMDRARQVLAEMTRIGVPAN 419

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
            ITYN+LLKGYC+QLQIDKA+ELL+EM DDA I+PDVVSYNILIDG IL+DDSAGAL+FF
Sbjct: 420 LITYNVLLKGYCKQLQIDKARELLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALSFF 479

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
           NEMRARGIAPTKISYTTLMKAFA S QPKLA++VF+EM  DPRVKVD++AWNMLVEGYCR
Sbjct: 480 NEMRARGIAPTKISYTTLMKAFAYSGQPKLAHRVFNEMDSDPRVKVDLIAWNMLVEGYCR 539

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
           +GLVEEAK+++++MKE+GF+P+V TYGSLANGI+LARKPGEALLLW E+KERCEV KEG 
Sbjct: 540 LGLVEEAKKVVQKMKESGFHPDVGTYGSLANGIALARKPGEALLLWNEVKERCEVGKEGG 599

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
            +DS + PPLKPD  LLD +ADICVRAAFFRKALEIVACMEE+GIPPNKTK+ +IYVEMH
Sbjct: 600 KSDSSV-PPLKPDGALLDTIADICVRAAFFRKALEIVACMEENGIPPNKTKFTRIYVEMH 658

Query: 526 SRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYY-GSEWRLDPMDG 574
           SRMFTSKHAS+ARQDRR ERKRAAEAFKFWLGLPNSYY GSEWRL+PM+G
Sbjct: 659 SRMFTSKHASRARQDRRVERKRAAEAFKFWLGLPNSYYDGSEWRLEPMEG 708


>gi|326502598|dbj|BAJ98927.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 733

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/584 (62%), Positives = 439/584 (75%), Gaps = 31/584 (5%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G LP  +A++  +SRL       P  +++LFD V+  +R+  D    S + PDTAA
Sbjct: 157 MLRRGLLPDRRAYTAAISRLR------PAHALRLFDAVLHHLRRAPDSASPSFALPDTAA 210

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEF-GAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           +NAVL+ACA+ G  ++F QLFD+M  +  A PD LTYNV IK+CARA R+ L+  VLERI
Sbjct: 211 FNAVLSACADAGDCRRFRQLFDEMRSWPSAAPDALTYNVAIKMCARAGRRDLVARVLERI 270

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L  GI  C TTF SLVAAYVGFGD+  AE IVQAMREGR DVC ++R + +E       G
Sbjct: 271 LSSGIAPCATTFHSLVAAYVGFGDIPTAERIVQAMREGRSDVCLLLRHVAVE-------G 323

Query: 180 DD---------DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           +D         D+  +V E ++       SE PLL +T+ PNSR+YTTLMKGYMN GRV 
Sbjct: 324 NDEKGIAVIVVDEHSDVLEDIVGPKPEEGSEVPLLSRTYPPNSRVYTTLMKGYMNAGRVD 383

Query: 231 DTVRMLGAMRRQEDN--ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           D V M  AMRR+ +   AS PDHVTYTTVVS L  AG M+RA  VL EM R GVPA+R+T
Sbjct: 384 DVVAMARAMRREGETMPASRPDHVTYTTVVSTLAAAGDMERAHAVLDEMARAGVPASRVT 443

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN+L+KGYCQQLQ+ +A+ELL EM  DA IE DVV+YN LIDG +L+DDSAGAL  FNEM
Sbjct: 444 YNVLIKGYCQQLQMSRARELLEEMTTDAGIEADVVTYNTLIDGCVLMDDSAGALALFNEM 503

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
           RARG+AP+ +SYTTLMKAFA S QPK+A+ VF+EM +DPRV VD  AWNMLVEGYC+ G+
Sbjct: 504 RARGVAPSTVSYTTLMKAFAASGQPKVAHNVFEEMEKDPRVTVDRPAWNMLVEGYCQQGM 563

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           +E AK+ +ERMKE+G  P+VATYGSLA GI++ARKPGEALLLW E+KERCE         
Sbjct: 564 LETAKQTVERMKESGVQPDVATYGSLAKGIAVARKPGEALLLWNEVKERCEA------GS 617

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
            +  P L+PDEELLDALAD+CVR AFF+KALEIVACMEE+GI PNKTKYKKIY+EMHSRM
Sbjct: 618 GNGKPGLRPDEELLDALADVCVRGAFFKKALEIVACMEENGIAPNKTKYKKIYIEMHSRM 677

Query: 529 FTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPM 572
           FTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWR+ P+
Sbjct: 678 FTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRVGPL 721


>gi|242054089|ref|XP_002456190.1| hypothetical protein SORBIDRAFT_03g031900 [Sorghum bicolor]
 gi|241928165|gb|EES01310.1| hypothetical protein SORBIDRAFT_03g031900 [Sorghum bicolor]
          Length = 731

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/587 (61%), Positives = 441/587 (75%), Gaps = 35/587 (5%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK-PDTA 59
           MLR G LP  +A++  V+RL       P ++++LFD V++ +R+ S P++VS S  PD A
Sbjct: 171 MLRQGLLPDRRAYTAAVARLTP-----PTKALRLFDAVLRHLRR-SPPELVSPSCLPDAA 224

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           A+N+ L+ACA+ G  ++F QLFD M E+ A  D LTYNV+IK+CARA RK L+  VLER+
Sbjct: 225 AFNSALSACADAGDCRRFRQLFDAMSEWSAAADALTYNVVIKMCARAGRKDLVARVLERM 284

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE-----DYS 174
           L  G+  C TTF SLVAA+VGFGD+  AE IVQAMRE R+D+C ++R + ++     D  
Sbjct: 285 LSSGLAPCATTFHSLVAAFVGFGDIATAERIVQAMREERKDICLLLRAVAMDCDGATDVV 344

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            E     DD     E+ L      + E PLLPK + PN+R+YTTLMKGYMN GRV D V 
Sbjct: 345 EEGAALLDDIVAGSEQELG-----ADEVPLLPKAYPPNARVYTTLMKGYMNAGRVDDVVA 399

Query: 235 MLGAMRRQEDNA--SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +L AMR++   A  S PDHVTYTTV+SALV AG + RA  VL EM   GVPANR+TYN+L
Sbjct: 400 VLRAMRQEARTAPASRPDHVTYTTVMSALVGAGDVARAHAVLDEMAADGVPANRVTYNVL 459

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           LKGYCQQLQI KA+EL  EM  DA I+P VV+YN L+DG +L DDSAGAL FFNEMR+RG
Sbjct: 460 LKGYCQQLQIGKARELFEEMVTDAGIQPGVVTYNTLMDGCVLSDDSAGALAFFNEMRSRG 519

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           IAP+ +SYTTLMKAFA+S QPK+A+KVF+EM RDPRV VD  AWNMLVEGYCR+G VE A
Sbjct: 520 IAPSTVSYTTLMKAFAVSGQPKVAHKVFEEMERDPRVTVDRAAWNMLVEGYCRLGQVETA 579

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           K+++ERMKE G  P+VATYGSLA G+++ARKPGEAL+LW E+KERC  +           
Sbjct: 580 KQVVERMKERGVQPDVATYGSLAKGVAMARKPGEALVLWNEVKERCLEEA---------- 629

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
                DEELL ALAD+CVRAAFF+KALEIVACMEE GI PNKTKYKK+Y+EMHSRMFTSK
Sbjct: 630 -----DEELLGALADVCVRAAFFKKALEIVACMEEKGIAPNKTKYKKMYIEMHSRMFTSK 684

Query: 533 HASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP-MDGDEYI 578
           HASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWR++P +DGD+ I
Sbjct: 685 HASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRIEPVLDGDDPI 731


>gi|414880874|tpg|DAA58005.1| TPA: hypothetical protein ZEAMMB73_979671 [Zea mays]
          Length = 730

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/582 (62%), Positives = 440/582 (75%), Gaps = 30/582 (5%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK-PDTA 59
           MLR G LP  +A++  VSRL       P ++++LFD V++ +R  + P++VS S  PD A
Sbjct: 171 MLRQGLLPDRRAYTAAVSRLTP-----PTKALRLFDAVLRNLRS-APPELVSPSCLPDAA 224

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           A+NA L+ACA+ G  ++F QLFD M E+ A  D LTYNV+IK+CARA RK L+  VLER+
Sbjct: 225 AFNAALSACADAGDCRRFRQLFDAMSEWSAAADALTYNVVIKMCARAGRKDLVARVLERM 284

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR--ELDLEDYSSEN 177
           L  G+T C TTF SLVAA+VGFGD+  AE IVQAMRE R+D+C ++R   +D +  +   
Sbjct: 285 LFSGLTPCATTFHSLVAAFVGFGDIATAERIVQAMREERKDICLLLRAVSMDCDGVTDVE 344

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           EG    DD V           S E PLLPK + PN+R+YTTLMKGY N GRV D + +L 
Sbjct: 345 EGAVLLDDIVAGA---KQGQGSDEVPLLPKAYPPNARVYTTLMKGYTNAGRVDDVLAVLR 401

Query: 238 AMRR--QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           AMR+  Q   AS PDHVTYTTV+SALV AG M RAR VL EM    VPANR+TYN+LLKG
Sbjct: 402 AMRQEAQTAPASRPDHVTYTTVISALVGAGDMARARAVLNEMAAARVPANRVTYNVLLKG 461

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YCQQLQI +A+EL  EM  DA I+P VV+YN L+DG +L DDSAGAL FFNEMR+RGIAP
Sbjct: 462 YCQQLQIGQARELFEEMVTDAGIQPGVVTYNTLMDGCVLTDDSAGALAFFNEMRSRGIAP 521

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           + +SYTTLMKAFA+S QPK+A+KVF+EM RDPRV VD  AWNMLVEGYCR+GLVE AK++
Sbjct: 522 STVSYTTLMKAFAVSGQPKVAHKVFEEMERDPRVTVDRAAWNMLVEGYCRLGLVETAKQV 581

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +ERMKE G  P+VATYGS+A GI++ARKPGEAL+LW E+KERC   KE            
Sbjct: 582 VERMKERGVQPDVATYGSMAKGIAVARKPGEALVLWNEVKERC--LKEA----------- 628

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
             DEELL ALAD+CVRAAFF+KALEIVACMEE GI PNKTKYKK+Y+EMHSRMFTSKHAS
Sbjct: 629 --DEELLGALADVCVRAAFFKKALEIVACMEEKGIAPNKTKYKKMYIEMHSRMFTSKHAS 686

Query: 536 QARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP-MDGDE 576
           QARQDRRRERKRAAEAFKFWLGLPNSYYGSEW+++P +DGD+
Sbjct: 687 QARQDRRRERKRAAEAFKFWLGLPNSYYGSEWQIEPLLDGDD 728


>gi|357155605|ref|XP_003577175.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Brachypodium distachyon]
          Length = 725

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/591 (58%), Positives = 429/591 (72%), Gaps = 31/591 (5%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G LP  +A++  VSRL+      P  +++LFD V+  +R+ +D    + S PDTAA
Sbjct: 156 MLRRGLLPDRRAYTAAVSRLSP-----PSRALRLFDAVLHHLRRTTD--APASSLPDTAA 208

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGA--KPDVLTYNVMIKLCARASRKHLLVFVLER 118
           +NA L+ACA+ G  ++F +LFD+M  +GA  +PDV+TYNV IK+CARA RK L+  VL R
Sbjct: 209 FNAALSACADAGDCRRFRRLFDEMRAWGAAAEPDVVTYNVAIKMCARAGRKDLVARVLPR 268

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           IL  G+    TTF S+VAAYVG  D+  AE +VQAMR+ R D+C ++R+L     S  + 
Sbjct: 269 ILAAGLAPDATTFHSIVAAYVGLRDIPAAEAVVQAMRDRRADLCLLLRQLP---SSPSSS 325

Query: 179 GDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            D D+   V E ++       +E  P LLP+T+ P+SR+YTTLMKGYMN GRV D V M 
Sbjct: 326 SDADEHSHVLEDIVVGDDGQGTEKAPLLLPRTYPPDSRVYTTLMKGYMNAGRVDDVVAMA 385

Query: 237 GAMRRQEDN--ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            AMRR+ +   AS PDHVTYTTV+S LV AG + RA  +L +M   GVPA+R+TYN+L+K
Sbjct: 386 RAMRREGETMPASKPDHVTYTTVMSTLVAAGDVGRAHALLDDMAGAGVPASRVTYNVLIK 445

Query: 295 GYCQQLQIDKAKELLREM--ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           GYCQQLQ+ KA+ELL+EM  AD   IEPDVV+YN L+DG +L DDSAGAL  FNEMR+RG
Sbjct: 446 GYCQQLQMSKARELLQEMMSADGGGIEPDVVTYNTLMDGCVLADDSAGALALFNEMRSRG 505

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +AP+  SYTTLMKAFA + QP+   +VFDEM RDP    D  AWNMLVEGYC+ G +E A
Sbjct: 506 VAPSTASYTTLMKAFAAAGQPRAVQRVFDEMDRDPNAAPDRAAWNMLVEGYCQQGHLESA 565

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           K   E+MKE G  P+VAT+GSLA G++ ARKPGEAL+LW E+K R +  +          
Sbjct: 566 KAATEKMKERGVQPDVATFGSLAKGVAAARKPGEALVLWGEVKARRDAGE---------- 615

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             L+PDEELLDALAD+CVR AFF+KALEIVACMEE+GI PNKTKYKKIY+EMHSRMFTSK
Sbjct: 616 --LRPDEELLDALADVCVRGAFFKKALEIVACMEENGIAPNKTKYKKIYIEMHSRMFTSK 673

Query: 533 HASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGD-EYITGDY 582
           HASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWR+ P+D + E   G+Y
Sbjct: 674 HASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRVGPLDSNSEDDDGNY 724


>gi|77552783|gb|ABA95579.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 697

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/573 (60%), Positives = 418/573 (72%), Gaps = 40/573 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G LP  +A++  ++RL       P  +++LFD ++  +R   +    ++S PDTAA
Sbjct: 155 MLRRGLLPDRRAYTAALARLP------PSRALRLFDALLHHLRHHHNK---TNSLPDTAA 205

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA L+ACAN G   +F  LFDQM  + A PD LTYNV+IK+CARA RK L+  VL RIL
Sbjct: 206 FNAALSACANAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARVLHRIL 265

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+T C TTF SLVAAYVGFGD+  AE IVQAMRE R D+C + R +     + ++   
Sbjct: 266 SSGLTPCATTFHSLVAAYVGFGDIPTAERIVQAMRERRTDICLLFRAV-----ADDHIIS 320

Query: 181 DDDDDEVFEKLLPNSINP--SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            D    V E +    + P    E PLLPK + PNSR+YTTLMKGYMN GRV D V ML A
Sbjct: 321 HDQQSCVLEDI----VKPWEQEEVPLLPKAYPPNSRVYTTLMKGYMNAGRVEDVVAMLRA 376

Query: 239 MRRQEDN--ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
           MRR+ +   AS PDHVTYTTV+S LV AG M+RAR VL EM + GV A+R+TYN+L+KGY
Sbjct: 377 MRREGETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEMGQAGVAASRVTYNVLIKGY 436

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQQLQ  KAKELL     +A I+PDVV+YN LIDG +L DDSAGA+  FNEMR RGIAP+
Sbjct: 437 CQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDDSAGAVALFNEMRERGIAPS 496

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +SYTTLMKAFA S QPKLA+KVFDEM +DPRV VD  AWNMLVE YCR+GL+E AK+++
Sbjct: 497 AVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWNMLVEAYCRLGLLESAKKVV 556

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           ERMK  G  P+VATYGSLA GI++AR+PGEALLLW+EIKE+ EV                
Sbjct: 557 ERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEK-EV---------------- 599

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
            D E+++ALAD+CVRAA FRKALE+VA MEE G+ PNK KYK++YV++HSRMFTSKHASQ
Sbjct: 600 -DGEVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMFTSKHASQ 658

Query: 537 ARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRL 569
           ARQDRRRERKRAAEAFKFWLGLPNSYY ++WRL
Sbjct: 659 ARQDRRRERKRAAEAFKFWLGLPNSYYATDWRL 691


>gi|115486864|ref|NP_001065238.1| Os12g0102600 [Oryza sativa Japonica Group]
 gi|113648426|dbj|BAF28938.1| Os12g0102600, partial [Oryza sativa Japonica Group]
          Length = 712

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/573 (60%), Positives = 418/573 (72%), Gaps = 40/573 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G LP  +A++  ++RL       P  +++LFD ++  +R   +    ++S PDTAA
Sbjct: 170 MLRRGLLPDRRAYTAALARLP------PSRALRLFDALLHHLRHHHNK---TNSLPDTAA 220

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA L+ACAN G   +F  LFDQM  + A PD LTYNV+IK+CARA RK L+  VL RIL
Sbjct: 221 FNAALSACANAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARVLHRIL 280

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+T C TTF SLVAAYVGFGD+  AE IVQAMRE R D+C + R +     + ++   
Sbjct: 281 SSGLTPCATTFHSLVAAYVGFGDIPTAERIVQAMRERRTDICLLFRAV-----ADDHIIS 335

Query: 181 DDDDDEVFEKLLPNSINP--SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            D    V E +    + P    E PLLPK + PNSR+YTTLMKGYMN GRV D V ML A
Sbjct: 336 HDQQSCVLEDI----VKPWEQEEVPLLPKAYPPNSRVYTTLMKGYMNAGRVEDVVAMLRA 391

Query: 239 MRRQEDN--ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
           MRR+ +   AS PDHVTYTTV+S LV AG M+RAR VL EM + GV A+R+TYN+L+KGY
Sbjct: 392 MRREGETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEMGQAGVAASRVTYNVLIKGY 451

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQQLQ  KAKELL     +A I+PDVV+YN LIDG +L DDSAGA+  FNEMR RGIAP+
Sbjct: 452 CQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDDSAGAVALFNEMRERGIAPS 511

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +SYTTLMKAFA S QPKLA+KVFDEM +DPRV VD  AWNMLVE YCR+GL+E AK+++
Sbjct: 512 AVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWNMLVEAYCRLGLLESAKKVV 571

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           ERMK  G  P+VATYGSLA GI++AR+PGEALLLW+EIKE+ EV                
Sbjct: 572 ERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEK-EV---------------- 614

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
            D E+++ALAD+CVRAA FRKALE+VA MEE G+ PNK KYK++YV++HSRMFTSKHASQ
Sbjct: 615 -DGEVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMFTSKHASQ 673

Query: 537 ARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRL 569
           ARQDRRRERKRAAEAFKFWLGLPNSYY ++WRL
Sbjct: 674 ARQDRRRERKRAAEAFKFWLGLPNSYYATDWRL 706


>gi|125535459|gb|EAY81947.1| hypothetical protein OsI_37125 [Oryza sativa Indica Group]
          Length = 697

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 344/573 (60%), Positives = 418/573 (72%), Gaps = 40/573 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G LP+ +A++  ++RL       P  +++LFD ++  +R   +    ++S PDTAA
Sbjct: 155 MLRRGLLPNRRAYTAALARLP------PSRALRLFDALLHHLRHHHNK---TNSLPDTAA 205

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA L+ACA+ G   +F  LFDQM  + A PD LTYNV+IK+CARA RK L+  VL RIL
Sbjct: 206 FNAALSACADAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARVLHRIL 265

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+T C TTF SLVAAYVGFGD+  AE IVQAMRE R D+C + R +  +   S     
Sbjct: 266 SSGLTPCATTFHSLVAAYVGFGDIPTAERIVQAMRERRTDICLLFRAVADDHIISH---- 321

Query: 181 DDDDDEVFEKLLPNSINP--SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            D    V E +    + P    E PLLPK + PNSR+YTTLMKGYMN GRV D V ML A
Sbjct: 322 -DQQSCVLEDI----VKPWEQDEVPLLPKAYPPNSRVYTTLMKGYMNAGRVEDVVAMLRA 376

Query: 239 MRRQEDN--ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
           MRR+ +   AS PDHVTYTTV+S LV AG M+RAR VL EM + GV A+R+TYN+L+KGY
Sbjct: 377 MRREGETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEMGQAGVAASRVTYNVLIKGY 436

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQQLQ  KAKELL     +A I+PDVV+YN LIDG +L DDSAGA+  FNEMR RGIAP+
Sbjct: 437 CQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDDSAGAVALFNEMRERGIAPS 496

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +SYTTLMKAFA S QPKLA+KVFDEM +DPRV VD  AWNMLVE YCR+GL+E AK+++
Sbjct: 497 AVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWNMLVEAYCRLGLLESAKKVV 556

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           ERMK  G  P+VATYGSLA GI++AR+PGEALLLW+EIKE+ EV                
Sbjct: 557 ERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEK-EV---------------- 599

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
            D E+++ALAD+CVRAA FRKALE+VA MEE G+ PNK KYK++YV++HSRMFTSKHASQ
Sbjct: 600 -DGEVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMFTSKHASQ 658

Query: 537 ARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRL 569
           ARQDRRRERKRAAEAFKFWLGLPNSYY ++WRL
Sbjct: 659 ARQDRRRERKRAAEAFKFWLGLPNSYYATDWRL 691


>gi|115483719|ref|NP_001065521.1| Os11g0103000 [Oryza sativa Japonica Group]
 gi|77548314|gb|ABA91111.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113644225|dbj|BAF27366.1| Os11g0103000 [Oryza sativa Japonica Group]
          Length = 543

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 344/573 (60%), Positives = 417/573 (72%), Gaps = 40/573 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G LP  +A++  ++RL       P  +++LFD ++  +R   +    ++S PDTAA
Sbjct: 1   MLRRGLLPDRRAYTAALARLP------PSRALRLFDALLHHLRHHHNK---TNSLPDTAA 51

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA L+ACA+ G   +F  LFDQM  + A PD LTYNV+IK+CARA RK L+  VL RIL
Sbjct: 52  FNAALSACADAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARVLHRIL 111

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+T C TTF SLVAAYVGFGD+  AE IVQAMRE R D+C + R +  +   S     
Sbjct: 112 SSGLTPCATTFHSLVAAYVGFGDIPTAERIVQAMRERRTDICLLFRAVADDHIISH---- 167

Query: 181 DDDDDEVFEKLLPNSINP--SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            D    V E +    + P    E PLLPK + PNSR+YTTLMKGYMN GRV D V ML A
Sbjct: 168 -DQQSCVLEDI----VKPWEQDEVPLLPKAYPPNSRVYTTLMKGYMNAGRVEDVVAMLRA 222

Query: 239 MRRQEDN--ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
           MRR+ +   AS PDHVTYTTV+S LV AG M+RAR VL EM + GV A+R+TYN+L+KGY
Sbjct: 223 MRREGETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEMGQAGVAASRVTYNVLIKGY 282

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQQLQ  KAKELL     +A I+PDVV+YN LIDG +L DDSAGA+  FNEMR RGIAP+
Sbjct: 283 CQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDDSAGAVALFNEMRERGIAPS 342

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +SYTTLMKAFA S QPKLA+KVFDEM +DPRV VD  AWNMLVE YCR+GL+E AK+++
Sbjct: 343 AVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWNMLVEAYCRLGLLESAKKVV 402

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           ERMK  G  P+VATYGSLA GI++AR+PGEALLLW+EIKE+ EV                
Sbjct: 403 ERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEK-EV---------------- 445

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
            D E+++ALAD+CVRAA FRKALE+VA MEE G+ PNK KYK++YV++HSRMFTSKHASQ
Sbjct: 446 -DGEVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMFTSKHASQ 504

Query: 537 ARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRL 569
           ARQDRRRERKRAAEAFKFWLGLPNSYY ++WRL
Sbjct: 505 ARQDRRRERKRAAEAFKFWLGLPNSYYATDWRL 537


>gi|222616460|gb|EEE52592.1| hypothetical protein OsJ_34898 [Oryza sativa Japonica Group]
          Length = 675

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 323/573 (56%), Positives = 395/573 (68%), Gaps = 62/573 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G LP  +A++  ++RL       P  +++LFD ++  +R   +    ++S PDTAA
Sbjct: 155 MLRRGLLPDRRAYTAALARLP------PSRALRLFDALLHHLRHHHNK---TNSLPDTAA 205

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA L+ACAN G   +F  LFDQM  + A PD LTYNV+IK+CARA RK L+  VL RIL
Sbjct: 206 FNAALSACANAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARVLHRIL 265

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G                             AMRE R D+C + R +     + ++   
Sbjct: 266 SSGSHPLRH----------------------HAMRERRTDICLLFRAV-----ADDHIIS 298

Query: 181 DDDDDEVFEKLLPNSINP--SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            D    V E +    + P    E PLLPK + PNSR+YTTLMKGYMN GRV D V ML A
Sbjct: 299 HDQQSCVLEDI----VKPWEQEEVPLLPKAYPPNSRVYTTLMKGYMNAGRVEDVVAMLRA 354

Query: 239 MRRQEDN--ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
           MRR+ +   AS PDHVTYTTV+S LV AG M+RAR VL EM + GV A+R+TYN+L+KGY
Sbjct: 355 MRREGETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEMGQAGVAASRVTYNVLIKGY 414

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQQLQ  KAKELL     +A I+PDVV+YN LIDG +L DDSAGA+  FNEMR RGIAP+
Sbjct: 415 CQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDDSAGAVALFNEMRERGIAPS 474

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +SYTTLMKAFA S QPKLA+KVFDEM +DPRV VD  AWNMLVE YCR+GL+E AK+++
Sbjct: 475 AVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWNMLVEAYCRLGLLESAKKVV 534

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           ERMK  G  P+VATYGSLA GI++AR+PGEALLLW+EIKE+ EV                
Sbjct: 535 ERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEK-EV---------------- 577

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
            D E+++ALAD+CVRAA FRKALE+VA MEE G+ PNK KYK++YV++HSRMFTSKHASQ
Sbjct: 578 -DGEVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMFTSKHASQ 636

Query: 537 ARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRL 569
           ARQDRRRERKRAAEAFKFWLGLPNSYY ++WRL
Sbjct: 637 ARQDRRRERKRAAEAFKFWLGLPNSYYATDWRL 669


>gi|168036356|ref|XP_001770673.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678034|gb|EDQ64497.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 717

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/566 (44%), Positives = 348/566 (61%), Gaps = 47/566 (8%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDI-VSDSKPDTAAYNAVLN 66
           P VK WS VVSRL    DD  + +++LFD V + + +     I V  ++PDT A+NA LN
Sbjct: 197 PSVKVWSAVVSRLGRHVDDCLL-ALELFDEVCRLIEEAESQGIDVRSARPDTGAFNAALN 255

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
           ACA LG   K   L + M   G +PD +T+N +IKL A+  ++ LL  + + ++E  +  
Sbjct: 256 ACATLGFAAKGEDLMNSMRRCGLQPDSITFNTLIKLYAKCDQRKLLKSLPDEMVENKVMP 315

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
             +T  SL+A YVG GDL  AE ++      RR          L+D S   +G+D     
Sbjct: 316 DESTVNSLIAGYVGLGDLREAEALL------RR----------LQDKS--EQGND----- 352

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
                     + +           P+ R YTTLMKGY+ +GR SD +R L AM+  +D  
Sbjct: 353 ----------SKTKSKSWWGAHLRPDVRTYTTLMKGYVQKGRRSDAMRTLLAMQMDKDPR 402

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
           S P+ V+YTT +S+ V+ G MD A  VL EM +  +P N ITYNILLKGYC   ++ KA 
Sbjct: 403 SSPNEVSYTTAISSCVRLGLMDEATVVLQEMLKHNIPVNVITYNILLKGYCSARKLQKAH 462

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            ++++M ++A +  DVVSYN LI+G I   D+A AL +F +MR  GI+P+ +SYTTLMKA
Sbjct: 463 SVVKDM-EEAGVALDVVSYNTLINGCIETGDNAAALDYFKKMRETGISPSAVSYTTLMKA 521

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
           F  + QPK  + VF+EM  DPR+K D VAWN+L++ YCR G V +AKR+  +MKE+   P
Sbjct: 522 FGRNGQPKQVHLVFEEMRNDPRMKTDAVAWNVLLDSYCRNGRVADAKRMFLQMKEDRVLP 581

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
              TY +L  G +L    GE L+LWKEIKER +          D   PL+PDE LL+ L 
Sbjct: 582 TAFTYATLVKGYALGGMLGEVLVLWKEIKERTD----------DEVNPLQPDEVLLNCLV 631

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERK 546
           D CVRA +F+KALE+VACMEE GIP NKTKYK+I++E++S ++T KHASQ R+DR  E++
Sbjct: 632 DTCVRAGYFQKALEVVACMEEKGIPANKTKYKRIFIELYSNLYTGKHASQRRRDRSEEKR 691

Query: 547 RAAEAFKFWLGLPNSYYGS-EWRLDP 571
            A EAFKFWLGLPN YY + +W+  P
Sbjct: 692 DAVEAFKFWLGLPNKYYSADDWKPSP 717


>gi|302768505|ref|XP_002967672.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
 gi|300164410|gb|EFJ31019.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
          Length = 717

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/582 (41%), Positives = 342/582 (58%), Gaps = 53/582 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDI---VSDSKPD 57
           ML  GY P VK WS VVS+L  + DD  + ++K+FD V + V +     +   +   KPD
Sbjct: 172 MLELGYHPPVKVWSAVVSKLGKNVDDAQL-ALKVFDEVCQCVVEQGMIQLHRKMERMKPD 230

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T A+NA LNACAN+G  ++  QL++ M  FG K + LT+NVMIKL AR  +   L  +L 
Sbjct: 231 TGAFNAALNACANIGNLERAEQLWELMPAFGVKANTLTFNVMIKLYARVEKLDKLEQILH 290

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
            + +  +    TTF SLVAA+VG G+L +AE+IVQ++R                      
Sbjct: 291 TMADADVDPDATTFNSLVAAFVGLGELSLAESIVQSLR---------------------- 328

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPK------TFAPNSRIYTTLMKGYMNEGRVSD 231
            G+ +    V              P LLPK       F P+ R YTTLMKGY+   RVSD
Sbjct: 329 -GEGEHQKRV--------------PALLPKLREHSAKFQPDVRTYTTLMKGYVQHNRVSD 373

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            +++L AM++++ +A+ P+ VT+TT + A  K G +D AR +L EM    V AN +TYN 
Sbjct: 374 AMQLLVAMQQEKTSAAMPNEVTFTTAIRACAKMGLLDEARVILQEMATQKVAANVVTYNT 433

Query: 292 LLKGYC--QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           LL+G C      + +A E++ +M  +A +E DVVSYN LI+G++   D+  AL  F  MR
Sbjct: 434 LLQGVCVFPITDMKRALEIVEDM-KEAGVELDVVSYNTLINGYLEAGDNEQALAVFTRMR 492

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              +  +K++Y TLMKAFA S + +L  KVF +M  DPRV+VD+VAWN L++ Y R GL 
Sbjct: 493 EAKVPASKVTYGTLMKAFARSGRTELVVKVFTQMALDPRVRVDVVAWNTLIDAYARAGLE 552

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           ++A R +E MK  GF P  ATY +L      +R  G+ +LLWKEI  R   +      D 
Sbjct: 553 QDATRALEDMKSRGFSPTNATYNTLVKTYGRSRNFGQLILLWKEINARSVEEDSAAVRDK 612

Query: 470 DL-PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN--KTKYKKIYVEMHS 526
            L    LKPD  LLD+L D  VR  +F+ AL++V CM+  GI     K KYK++YVE+++
Sbjct: 613 PLVVGALKPDAALLDSLIDSFVRGGYFQLALQVVDCMDRQGIHSGRAKAKYKRLYVELYA 672

Query: 527 RMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWR 568
            ++TS+H S+ R+ +  ER+RA EAFKFW+GLPNS Y SEWR
Sbjct: 673 NLYTSRHTSERRKSKTAERRRAVEAFKFWVGLPNSLYKSEWR 714



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 114/288 (39%), Gaps = 72/288 (25%)

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-------------------- 263
           M   RV      LG +R   +   HP    ++ VVS L K                    
Sbjct: 154 MASARVGTAHYSLGVLRTMLELGYHPPVKVWSAVVSKLGKNVDDAQLALKVFDEVCQCVV 213

Query: 264 ------------------------------AGSMDRARQVLAEMTRIGVPANRITYNILL 293
                                          G+++RA Q+   M   GV AN +T+N+++
Sbjct: 214 EQGMIQLHRKMERMKPDTGAFNAALNACANIGNLERAEQLWELMPAFGVKANTLTFNVMI 273

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG- 352
           K Y +  ++DK +++L  MA DA ++PD  ++N L+  F+ + + + A +    +R  G 
Sbjct: 274 KLYARVEKLDKLEQILHTMA-DADVDPDATTFNSLVAAFVGLGELSLAESIVQSLRGEGE 332

Query: 353 ------------------IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV--D 392
                               P   +YTTLMK +   ++   A ++   M ++       +
Sbjct: 333 HQKRVPALLPKLREHSAKFQPDVRTYTTLMKGYVQHNRVSDAMQLLVAMQQEKTSAAMPN 392

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            V +   +    +MGL++EA+ I++ M       NV TY +L  G+ +
Sbjct: 393 EVTFTTAIRACAKMGLLDEARVILQEMATQKVAANVVTYNTLLQGVCV 440



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 85/195 (43%), Gaps = 10/195 (5%)

Query: 341 ALTFFNEMRAR-GIAPTKISYTTLMKAF---ALSSQPKLANKVFDEMLRDPRVK--VDIV 394
           A T F  M  + G+ P ++  + L+        ++    A ++  E+ +  +V   VD  
Sbjct: 88  AWTKFETMTKKLGVLPDRVCVSRLVAQLCHQGTAASVSKAQQIMVELRQKRKVSELVDCD 147

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           A  +LV    R+G    +  ++  M E G++P V  + ++ +   L +   +A L  K  
Sbjct: 148 AMGLLVMASARVGTAHYSLGVLRTMLELGYHPPVKVWSAVVS--KLGKNVDDAQLALKVF 205

Query: 455 KERCE-VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            E C+ V ++G+         +KPD    +A  + C       +A ++   M   G+  N
Sbjct: 206 DEVCQCVVEQGMIQLHRKMERMKPDTGAFNAALNACANIGNLERAEQLWELMPAFGVKAN 265

Query: 514 KTKYKKIYVEMHSRM 528
              +  + +++++R+
Sbjct: 266 TLTF-NVMIKLYARV 279


>gi|302761110|ref|XP_002963977.1| hypothetical protein SELMODRAFT_82002 [Selaginella moellendorffii]
 gi|300167706|gb|EFJ34310.1| hypothetical protein SELMODRAFT_82002 [Selaginella moellendorffii]
          Length = 716

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/582 (41%), Positives = 341/582 (58%), Gaps = 53/582 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDI---VSDSKPD 57
           ML  GY P VK WS +VS+L  + DD  + ++K+FD V + V +     +   +   KPD
Sbjct: 171 MLELGYHPPVKVWSALVSKLGKNVDDAQL-ALKVFDEVCQCVAEQGMIQLHRKMERMKPD 229

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T A+NA LNACAN+G  ++  QL++ M  FG K + LT+NVMIKL AR  +   L  +L 
Sbjct: 230 TGAFNAALNACANIGNLERAEQLWELMPAFGVKANTLTFNVMIKLYARVEKLDKLEQILH 289

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
            + +  +    TTF SLVAA+VG G+L +AE+IVQ++R                      
Sbjct: 290 TMADADVDPDATTFNSLVAAFVGLGELSLAESIVQSLR---------------------- 327

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPK------TFAPNSRIYTTLMKGYMNEGRVSD 231
            G+ +    V              P LLPK       F P+ R YTTLMKGY+   RVSD
Sbjct: 328 -GEGEHQTRV--------------PALLPKLREHSAKFQPDVRTYTTLMKGYVQHNRVSD 372

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            +++L AM++++ +A+ P+ VT+TT + A  K G +D AR +L EM    V AN +TYN 
Sbjct: 373 AMQLLVAMQQEKTSAAMPNEVTFTTAIRACAKMGLLDEARVILQEMATQKVAANVVTYNT 432

Query: 292 LLKGYC--QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           LL+G C      + +A E++ +M  +A +E DVVSYN LI+G++   D+  AL  F  MR
Sbjct: 433 LLQGVCVFPITDMKRALEIVEDM-KEAGVELDVVSYNTLINGYLEAGDNEQALAAFTRMR 491

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              +  +K++Y TLMKAFA S + +L  KVF +M  DPRV+VD+VAWN L++ Y R GL 
Sbjct: 492 EAKVPASKVTYGTLMKAFARSGRTELVVKVFTQMALDPRVRVDVVAWNTLIDAYARAGLE 551

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           ++A R +E MK  GF P  ATY +L      +R  G  +LLWKEI  R   +      D 
Sbjct: 552 QDATRALEDMKSRGFSPTNATYNTLVKTYGRSRNFGLLILLWKEINARSVEEDSAAVRDK 611

Query: 470 DL-PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN--KTKYKKIYVEMHS 526
            L    LKPD  LLD+L D  VR  +F+ AL++V CM+  GI     K KYK++YVE+++
Sbjct: 612 PLVVGALKPDAALLDSLIDSFVRGGYFQLALQVVDCMDRQGIHSGRAKAKYKRLYVELYA 671

Query: 527 RMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWR 568
            ++TS+H S+ R+ +  ER+RA EAFKFW+GLPNS Y SEWR
Sbjct: 672 NLYTSRHTSERRKSKTAERRRAVEAFKFWVGLPNSLYKSEWR 713



 Score = 42.0 bits (97), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 10/195 (5%)

Query: 341 ALTFFNEMRAR-GIAPTKISYTTLMKAF---ALSSQPKLANKVFDEMLRDPRVK--VDIV 394
           A T F  M  + G+ P ++  + L+        ++    A ++  E+ +  +V   VD  
Sbjct: 87  AWTKFETMTKKLGVLPDRVCVSRLVAQLCHQGTAASVSKAQQIMVELRQKRKVSELVDCD 146

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           A  +LV    R+G    +  ++  M E G++P V  + +L +   L +   +A L  K  
Sbjct: 147 AMGLLVMASARVGTAHYSLGVLRTMLELGYHPPVKVWSALVS--KLGKNVDDAQLALKVF 204

Query: 455 KERCE-VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            E C+ V ++G+         +KPD    +A  + C       +A ++   M   G+  N
Sbjct: 205 DEVCQCVAEQGMIQLHRKMERMKPDTGAFNAALNACANIGNLERAEQLWELMPAFGVKAN 264

Query: 514 KTKYKKIYVEMHSRM 528
              +  + +++++R+
Sbjct: 265 TLTF-NVMIKLYARV 278


>gi|384251959|gb|EIE25436.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 627

 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 167/586 (28%), Positives = 259/586 (44%), Gaps = 89/586 (15%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           SG  P+V  WS+V+S L      G   +   +++       + + D    +  + A Y A
Sbjct: 121 SGLTPNVITWSSVISSLCKQRRKGAPCAHLAYEL-------WRELDASGLATGNAALYAA 173

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
            +NAC  LG   +   L   M  +G + DV  YN+++K  A A     +   +  +  + 
Sbjct: 174 GMNACIGLGYVDEAAGLLRTMQGWGMRADVRAYNILLKGQANAHSLSAMQATMADMERLQ 233

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +   + T+  L+ A+V  G LE A   +Q       +  K+   LDL  Y+         
Sbjct: 234 VAPSVVTYNILIDAFVNEGLLEQAAAKLQ-------EAQKLGLRLDLWSYN--------- 277

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                                             TL+KG+    +V+D   +L AM+ Q 
Sbjct: 278 ----------------------------------TLIKGFCQANQVADARDVLEAMKLQN 303

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-- 301
                P+ VTYTT+V   V+AG +  A ++L +M  +GVP N +T+NI+L+GYCQ     
Sbjct: 304 ---VQPNVVTYTTLVDGCVRAGDLFLAEEMLRDMQFMGVPPNTVTFNIMLRGYCQWSTRP 360

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           I  A E LR M   A + P   ++N L+   +   D       F  + + G  P  +SYT
Sbjct: 361 IQDALETLRSMG-MAGVVPSTDTFNTLMGACLSRGDPGAVPRLFRRLISLGHTPDALSYT 419

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +L+ +     +P+ A   F  M  D RV VD+ A N +V+   R G + +A+  +ER  E
Sbjct: 420 SLITSLTRLGRPEDAVLAFRAMEADARVAVDLAALNAVVDALARCGRMGDAEDQLERATE 479

Query: 422 ----NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
                G  P +  YG+L    +  R    AL + +E  ER                   P
Sbjct: 480 LCRRRGRPPPLEAYGALLAEYARRRDADAALAVLQEFFERGGT----------------P 523

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQA 537
           D+++ D + D+C+R   FR+A++ V  ME  G   +K + K+   +M  R      A Q 
Sbjct: 524 DDQMFDTVMDLCMRTGEFRRAMQAVRAMEAVGRQVDKARIKRALEDMMRR---QSAALQG 580

Query: 538 RQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGDEYITGDYR 583
           RQ RRR R    E  KFWLG+PNSYY S+WR    +  E  + D+R
Sbjct: 581 RQ-RRRSRNEGLERLKFWLGIPNSYYESDWR--AQESSEESSNDWR 623



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 110/268 (41%), Gaps = 46/268 (17%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P + I   L+KG   +G      ++  +   Q+  +    + TY  +++   +AG    A
Sbjct: 55  PENLISDQLLKGLCAKGAFRTAWKLYSS---QQGRSKTYQYSTYQALITGAFQAGEAYDA 111

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQ----------------------------- 301
            Q   ++   G+  N IT++ ++   C+Q +                             
Sbjct: 112 VQAFRDLQSSGLTPNVITWSSVISSLCKQRRKGAPCAHLAYELWRELDASGLATGNAALY 171

Query: 302 ------------IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
                       +D+A  LLR M     +  DV +YNIL+ G       +       +M 
Sbjct: 172 AAGMNACIGLGYVDEAAGLLRTM-QGWGMRADVRAYNILLKGQANAHSLSAMQATMADME 230

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              +AP+ ++Y  L+ AF      + A     E  +   +++D+ ++N L++G+C+   V
Sbjct: 231 RLQVAPSVVTYNILIDAFVNEGLLEQAAAKLQEA-QKLGLRLDLWSYNTLIKGFCQANQV 289

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANG 437
            +A+ ++E MK     PNV TY +L +G
Sbjct: 290 ADARDVLEAMKLQNVQPNVVTYTTLVDG 317


>gi|302790097|ref|XP_002976816.1| hypothetical protein SELMODRAFT_105853 [Selaginella moellendorffii]
 gi|300155294|gb|EFJ21926.1| hypothetical protein SELMODRAFT_105853 [Selaginella moellendorffii]
          Length = 636

 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/558 (24%), Positives = 255/558 (45%), Gaps = 65/558 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M ++G  P V+ W+ V+        D     +KL D  +       + +++   +PD  +
Sbjct: 99  MFQTGLYPSVRVWTAVM----VEEPDPVARIIKLMDFAMM---PKGNEELLVSMRPDVTS 151

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N+ L  CA L   +   ++F  M  FG  P+  ++ ++IK+  +A R  L   V +R+ 
Sbjct: 152 FNSALRICATLADTQNAEEIFHSMSLFGVLPNSDSFELLIKVYGKARRFDLFRKVPQRME 211

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              +    +T ++LV AYV  G++E AE ++Q   +G+  +  +++           EGD
Sbjct: 212 AACVRPSASTLKALVDAYVESGNIEEAEKVLQKTVQGKSSLWNLVKL----------EGD 261

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                             +Y +L+K Y  E R+SD   +L ++ 
Sbjct: 262 ----------------------------------VYNSLLKAYALEARLSDAANLLSSVP 287

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             ED  +  D      VV++++ +G +     +L  M +  +  +   Y  L+ G+C   
Sbjct: 288 -LEDAGTGLDQ---ARVVASMIASGMLKEICSILQYMLQHRMEVSFSAYKSLMHGFCANN 343

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q+DKA   +  M   A I+PD   Y  LI G +   D   A   F EM    I P + +Y
Sbjct: 344 QLDKAASFIILM-KRAGIKPDCSIYGPLIQGLVRCRDRLLAYHTFLEMVEARIVPDEATY 402

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +L+KA  +  +     +V + ++  P VK+ + +WN+++E   +  L+ +A+R++ RM 
Sbjct: 403 VSLLKALTVEERASKMVRVLEAVMEFPSVKISLFSWNLVIEYCSKKKLIGDAQRMLARMA 462

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  P+  +Y  +  G+    +  + L LW +I+           +  D P  +   ++
Sbjct: 463 PAGVQPDSYSYWYVVKGLITRSRLTDVLGLWPQIQ---------FASRRDRPNRIILHKQ 513

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
           L++ L    V+ A F +ALE++   +E  IP ++  +K ++++ HS  FTSKH S  R  
Sbjct: 514 LVETLMYAFVKGANFAQALELLEYAKEEDIPLDREAFKDLFLKYHSHRFTSKHKSPLRVY 573

Query: 541 RRRERKRAAEAFKFWLGL 558
            R+++    E FK WL L
Sbjct: 574 GRQQQLLEMEEFKKWLSL 591


>gi|302797571|ref|XP_002980546.1| hypothetical protein SELMODRAFT_113055 [Selaginella moellendorffii]
 gi|300151552|gb|EFJ18197.1| hypothetical protein SELMODRAFT_113055 [Selaginella moellendorffii]
          Length = 636

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/558 (24%), Positives = 255/558 (45%), Gaps = 65/558 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M ++G  P V+ W+ V+        D     +KL D  +       + +++   +PD  +
Sbjct: 99  MFQTGLYPPVRVWTAVM----VEEPDPVARIIKLMDFAMM---PKGNEELLVSMRPDVTS 151

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N+ L  CA L   +   ++F  M  FG  P+  ++ ++IK+  +A R  L   V +R+ 
Sbjct: 152 FNSALRICATLADTQNAEEIFHSMSLFGVLPNSDSFELLIKVYGKARRFDLFRKVPQRME 211

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              +    +T ++L+ AYV  G++E AE ++Q   +G+  +  +++           EGD
Sbjct: 212 AACVRPSASTLKALIDAYVESGNIEEAEKVLQKTVQGKSSLWNLVKL----------EGD 261

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                             +Y +L+K Y  E R+SD   +L ++ 
Sbjct: 262 ----------------------------------VYNSLLKAYALEARLSDAANLLSSVP 287

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             ED  +  D      VV++++ +G +     +L  M +  +  +   Y  L+ G+C   
Sbjct: 288 -LEDAGTGLDQ---ARVVASMIASGMLKEICSILQYMLQHRMEVSFSAYKSLMHGFCANN 343

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q+DKA   +  M   A I+PD   Y  LI G +   D   A   F EM    I P + +Y
Sbjct: 344 QLDKAASFIILM-KRAGIKPDCSIYGPLIQGLVRCRDRLLAYHTFLEMVEARIVPDEATY 402

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +L+KA  +  +     +V + ++  P VK+ + +WN+++E   +  L+ +A+R++ RM 
Sbjct: 403 VSLLKALTVEERASKMVRVLEAVMEFPSVKISLFSWNLVIEYCSKKKLIGDAQRMLARMA 462

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  P+  +Y  +  G+    +  + L LW +I+           +  D P  +   ++
Sbjct: 463 PAGVQPDSYSYWYVVKGLITRSRLTDVLGLWPQIQ---------FASRRDRPNRIILHKQ 513

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
           L++ L    V+ A F +ALE++   +E  IP ++  +K ++++ HS  FTSKH S  R  
Sbjct: 514 LVETLMYAFVKGANFAQALELLEYAKEEDIPLDREAFKDLFLKYHSHRFTSKHKSPLRVY 573

Query: 541 RRRERKRAAEAFKFWLGL 558
            R+++    E FK WL L
Sbjct: 574 GRQQQLLEMEEFKKWLSL 591


>gi|15218705|ref|NP_171809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200246|sp|Q9SA60.1|PPR6_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03100, mitochondrial; Flags: Precursor
 gi|4587568|gb|AAD25799.1|AC006550_7 Contains PF|00637 Clathrin 7-fold repeat. EST gb|AA721862 comes
           from this gene [Arabidopsis thaliana]
 gi|44917465|gb|AAS49057.1| At1g03100 [Arabidopsis thaliana]
 gi|332189408|gb|AEE27529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 793

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 155/606 (25%), Positives = 266/606 (43%), Gaps = 69/606 (11%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-----KPDTAAYN 62
           PHV AWS V++ ++ +G    + +  + ++         DP   S++     KP+T   N
Sbjct: 203 PHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQVLN 262

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
             L  C   G  +K  QL D + + G K D     +M  +  R  R+  L   L+R ++ 
Sbjct: 263 VALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELR-KLQRHIDE 321

Query: 123 GITLCMTTF----QSLVAAYVGFGDLEIAETIV-QAMREG---RRDVCKIIRELDLED-- 172
              L  + F      L+  ++ FGDLE A  +V + +R G   R  +   I E D  D  
Sbjct: 322 ACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDG 381

Query: 173 --YSSENEGDDDD----DDEVFEKLLPNSINPSSE------------------PPLLPK- 207
             Y+    G   +    D+     +  +S+ P  E                    LL K 
Sbjct: 382 RLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLAKL 441

Query: 208 ------------TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                          P   IY  L K ++  G++ +  + L      ED+    D+    
Sbjct: 442 HVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFL-LKAEHEDSPVSSDNSMLI 500

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            V++A +  G +D+A  +L EM   GV      Y+ LLK YC   Q  +   LLR+ A  
Sbjct: 501 NVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRD-AQK 559

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKISYTTLMKAFALSSQPK 374
           A I+ D   Y  LI   ++ +D+ GAL  F EM+ A+ +      +  L+K    +++  
Sbjct: 560 AGIQLDSSCYEALIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAG 619

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           L +K+  E+     +   +  WN ++  + + GL+++A++ ++RM+  G  PN  T+ S+
Sbjct: 620 LMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSM 679

Query: 435 ANGIS-LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
             G + +  K  E   LW E+K           + +     +K D+ELLDA+    VR  
Sbjct: 680 VTGYAAIGSKYTEVTELWGEMK-----------SIAAATSSMKFDQELLDAVLYTFVRGG 728

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFK 553
           FF +A E+V  ME+  +  +K KY+ ++++ H   +  K A + + + + +++ A   FK
Sbjct: 729 FFSRANEVVEMMEKKNMFVDKYKYRMLFLKYHKTAYKGK-APKVQSESQLKKREAGLVFK 787

Query: 554 FWLGLP 559
            WLGL 
Sbjct: 788 KWLGLS 793


>gi|225423470|ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290
           [Vitis vinifera]
          Length = 655

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 229/506 (45%), Gaps = 64/506 (12%)

Query: 55  KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A N  L  C+ +L    +  ++ + M   G +PD  ++  +  L A    +  +V
Sbjct: 210 KPDLDACNVALEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIV 269

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLED 172
            +   +   G +     +  L+ AYV  G+LE ++ TI +++RE                
Sbjct: 270 ELEGLMRGFGFSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLRE---------------- 313

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                   DD+    F +                         Y  ++KG++  G + D 
Sbjct: 314 --------DDEQGPNFSE-----------------------ETYCEVVKGFLQNGSIKDL 342

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             ++   ++ E ++   D      ++SA V  G +D+A  +L EM   GV      Y  +
Sbjct: 343 ASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSI 402

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           LK +C++ +  +A +L+ E++    ++ D  SY+ LI+  +   D   A + F +MR   
Sbjct: 403 LKAFCKEHRTAEAAQLVTEISS-LGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREAR 461

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +   K SY T+M     + +P+L     DE++ DPRV+V    WN ++  +C++G +E+A
Sbjct: 462 VPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDA 521

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           +R   RM    F PN  TY SL NG + A K    L+LW E+K R  +  E         
Sbjct: 522 RRTFRRMIFLQFEPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGE--------- 572

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             +K D  L+DA     V+  FF   +++V   +E  I  +K +YK+ ++E+H ++  +K
Sbjct: 573 KGVKFDHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKIFVDKWRYKQAFMEVHKKLKVAK 632

Query: 533 HASQARQDRRRERKRAAEAFKFWLGL 558
              + R  R+ E   A  AFK W GL
Sbjct: 633 --VRKRNFRKME---ALIAFKNWAGL 653



 Score = 38.9 bits (89), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 70/344 (20%), Positives = 141/344 (40%), Gaps = 41/344 (11%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR-VRKFSDPDIVS------DS 54
           ++SG L +V    T+   L    + GP  S + +  VVK  ++  S  D+ S        
Sbjct: 295 VKSGNLEYVS--RTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSIKDLASLIIETQKL 352

Query: 55  KPDTAAYN-----AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           +P + A +      +++AC +LG   K   + D+M+  G    +  Y  ++K   +  R 
Sbjct: 353 EPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSILKAFCKEHRT 412

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKI 164
                ++  I  +G+ L   ++ +L+ A +   D + A ++ + MRE R          +
Sbjct: 413 AEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREARVPDMKGSYLTM 472

Query: 165 IRELDLEDYSSE------NEGDDDDDDEVFEKLLPNSINPSSEPPLLP---KTF------ 209
           +  L  E++  E      +E  +D   EV      + I+   +   L    +TF      
Sbjct: 473 MTGLT-ENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMIFL 531

Query: 210 --APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ----EDNASHPDHVTYTTVVSALVK 263
              PN + Y +L+ GY +  +    + +   ++R+     +     DH      + ALVK
Sbjct: 532 QFEPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGVKFDHNLVDAFLYALVK 591

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            G  D   QV+ +   + +  ++  Y        ++L++ K ++
Sbjct: 592 GGFFDAVMQVVEKSQEMKIFVDKWRYKQAFMEVHKKLKVAKVRK 635


>gi|359479705|ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Vitis vinifera]
          Length = 784

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 160/609 (26%), Positives = 269/609 (44%), Gaps = 75/609 (12%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVV----KRV--RKFSDPDIVSDSKPDTAA 60
            P V AWS +++ ++ +     + +  + ++       RV  RK S+  +++  KP+T A
Sbjct: 193 FPPVSAWSAILAHMSQTASGAYLAAELILEIGYLFQDGRVDPRKKSNRPLLA-MKPNTTA 251

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N  L  C   G  +K  +L D M   G KPDV    +M  +  R  R+  L   L+R +
Sbjct: 252 FNIALAGCLLFGTTRKAEKLLDMMPRVGVKPDVNLLIIMAHIYERNGRREDLR-KLKRHI 310

Query: 121 EMGITLCMTTFQS----LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           +    L    F+     L+  ++ FGDL+ A  +V  M    R+    +    L  + + 
Sbjct: 311 DEAHNLSDIQFRQFYNCLLTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLM-FEAV 369

Query: 177 NEGDDDDDDEVFEKLL------------PN-SINPSSEP-------------------PL 204
             G+    ++V EK L            PN S++ S E                     L
Sbjct: 370 GSGNTSTQEQVSEKSLSHRKSDGLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRL 429

Query: 205 LPK-------------TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
           L K                P  RIY  L+K ++  G+       L     +ED+    D+
Sbjct: 430 LAKLQMQVEFITTERGILQPTERIYVKLVKAFLEAGKTKQLAEFL-IKAEKEDSPVSTDN 488

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
                V+++ +  G +D+A  +L EM   GV      Y+ LLK YC+  +  +   LLR+
Sbjct: 489 SALVHVINSCILLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCKANRAGEITSLLRD 548

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALS 370
            A  A ++ D   Y  LI   +L  D+ GAL  F EM+   I  +    +  L+K  A S
Sbjct: 549 -ARKAGVQLDSSCYEALIQSRVLQKDTEGALHVFKEMKEAKIPRSGHREFEMLVKGCAES 607

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
            +  L  K+  E+  + RV   +  WN ++  +CR  L+++A++ +++M+  G  PN  T
Sbjct: 608 GEAGLMAKLLHEIKEEQRVDCGVHDWNNVIHFFCRKRLMQDAEKALKKMRSLGHAPNAQT 667

Query: 431 YGSLANGI-SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           + S+  G  ++  K  E   LW E+K                   +K D+ELLDA+    
Sbjct: 668 FHSMVTGYAAIGGKYVEVTELWGEMKSFAS------------SSSMKFDQELLDAVLYTF 715

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAA 549
           VR  FF +A E+V  ME   +  +K KY+ ++++ H  ++ SK   + + + +  R+ AA
Sbjct: 716 VRGGFFVRANEVVEMMERGKMFIDKYKYRTLFLKYHKTLYKSK-PPKVQTEAQFRRRDAA 774

Query: 550 EAFKFWLGL 558
             FK W+GL
Sbjct: 775 LTFKKWVGL 783


>gi|296085227|emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 266/608 (43%), Gaps = 73/608 (12%)

Query: 7    LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-----KPDTAAY 61
             P V AWS +++ ++ +     + +  + ++         DP   S+      KP+T A+
Sbjct: 770  FPPVSAWSAILAHMSQTASGAYLAAELILEIGYLFQDGRVDPRKKSNRPLLAMKPNTTAF 829

Query: 62   NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
            N  L  C   G  +K  +L D M   G KPDV    +M  +  R  R+  L   L+R ++
Sbjct: 830  NIALAGCLLFGTTRKAEKLLDMMPRVGVKPDVNLLIIMAHIYERNGRREDLR-KLKRHID 888

Query: 122  MGITLCMTTFQS----LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
                L    F+     L+  ++ FGDL+ A  +V  M    R+    +    L  + +  
Sbjct: 889  EAHNLSDIQFRQFYNCLLTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLM-FEAVG 947

Query: 178  EGDDDDDDEVFEKLL------------PN-SINPSSEP-------------------PLL 205
             G+    ++V EK L            PN S++ S E                     LL
Sbjct: 948  SGNTSTQEQVSEKSLSHRKSDGLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRLL 1007

Query: 206  PK-------------TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
             K                P  RIY  L+K ++  G+       L     +ED+    D+ 
Sbjct: 1008 AKLQMQVEFITTERGILQPTERIYVKLVKAFLEAGKTKQLAEFL-IKAEKEDSPVSTDNS 1066

Query: 253  TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
                V+++ +  G +D+A  +L EM   GV      Y+ LLK YC+  +  +   LLR+ 
Sbjct: 1067 ALVHVINSCILLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCKANRAGEITSLLRD- 1125

Query: 313  ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALSS 371
            A  A ++ D   Y  LI   +L  D+ GAL  F EM+   I  +    +  L+K  A S 
Sbjct: 1126 ARKAGVQLDSSCYEALIQSRVLQKDTEGALHVFKEMKEAKIPRSGHREFEMLVKGCAESG 1185

Query: 372  QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
            +  L  K+  E+  + RV   +  WN ++  +CR  L+++A++ +++M+  G  PN  T+
Sbjct: 1186 EAGLMAKLLHEIKEEQRVDCGVHDWNNVIHFFCRKRLMQDAEKALKKMRSLGHAPNAQTF 1245

Query: 432  GSLANGI-SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
             S+  G  ++  K  E   LW E+K           A S     +K D+ELLDA+    V
Sbjct: 1246 HSMVTGYAAIGGKYVEVTELWGEMKS---------FASSS---SMKFDQELLDAVLYTFV 1293

Query: 491  RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAE 550
            R  FF +A E+V  ME   +  +K KY+ ++++ H  ++ SK   + + + +  R+ AA 
Sbjct: 1294 RGGFFVRANEVVEMMERGKMFIDKYKYRTLFLKYHKTLYKSK-PPKVQTEAQFRRRDAAL 1352

Query: 551  AFKFWLGL 558
             FK W+GL
Sbjct: 1353 TFKKWVGL 1360


>gi|242058949|ref|XP_002458620.1| hypothetical protein SORBIDRAFT_03g036830 [Sorghum bicolor]
 gi|241930595|gb|EES03740.1| hypothetical protein SORBIDRAFT_03g036830 [Sorghum bicolor]
          Length = 674

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 146/565 (25%), Positives = 255/565 (45%), Gaps = 78/565 (13%)

Query: 1   MLRSGY-LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           MLR G  LP    W   +  L  +        +K+FD   K V +   P   +  +PD A
Sbjct: 179 MLRCGRRLPAFSVWGHPLIELTRADPGAFAAFLKVFDEACKLVVEEKSPAEAAVMRPDRA 238

Query: 60  AYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA-RASRKHLLVFVLE 117
           A NA+L+ C   LG      ++ + M   G  PDV ++  +  L A R  R    V  L+
Sbjct: 239 ACNAILSGCCRGLGSLVDAERVLETMSAVGVSPDVESFGCLAFLYAWRGVRSR--VDELD 296

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            +L+         F++LV+ Y+  GD E ++  I++A++E R                  
Sbjct: 297 TLLDALGFSKKGFFKNLVSGYLKSGDFESVSPIILRAVKERR------------------ 338

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             GDD+  DE                             Y+ + + ++++ R+ +  +++
Sbjct: 339 -VGDDNGFDE---------------------------ETYSEVAQCFVDQSRIKELAQLI 370

Query: 237 ---GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
                +   + + S  D V +  +V+A V+ G +++A  +L EMT  G       Y+ +L
Sbjct: 371 IQAHEIELTQQSMSVEDSVGFG-IVNACVELGLLNKAHSILDEMTAQGASIGLGVYSSIL 429

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           K YC++ +  +A +L+ E++  A ++ D  SY+ LID  +   D   A   F +MR   +
Sbjct: 430 KAYCKEHKTAEAAQLVAEISA-AGLKLDAGSYDALIDASMTAHDFQSAFALFKDMREARL 488

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
              + SY T+M     +++P L     D ++ DPR+++    WN ++  +C++G +E+A+
Sbjct: 489 PELRTSYLTIMTGLTENNKPGLMASFLDSVVDDPRIEIATHDWNSIIHAFCKVGRLEDAR 548

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           R   RM    F PN  TY SL NG   A K    L+LW       EV+++G         
Sbjct: 549 RTYRRMVFLRFEPNNQTYLSLINGYVSAEKYFNVLILWT------EVRRKGTEF------ 596

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
               + EL+DA     V+  FF  A++++   +E  I  +K +YK+ ++E H ++  +K 
Sbjct: 597 ----NHELIDAFLYALVKGGFFDMAMQVIEKAQEFKIFIDKWRYKQAFMETHKKLKVAK- 651

Query: 534 ASQARQDRRRERKRAAEAFKFWLGL 558
                + R   +  A  AFK W G+
Sbjct: 652 ----LRKRNFRKMEALVAFKNWAGI 672


>gi|357125396|ref|XP_003564380.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g69290-like [Brachypodium distachyon]
          Length = 668

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 146/562 (25%), Positives = 258/562 (45%), Gaps = 85/562 (15%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP   AW   +  L  +  D     +K+FD   + + +   P +++  +PD AA NAVL+
Sbjct: 180 LPAFSAWGRQLIDLTRTDTDSFAALLKVFDEACRLMVEEKSPSVIAVMRPDLAACNAVLD 239

Query: 67  ACAN-LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR---ASRKHLLVFVLERILE- 121
            C   LG      ++ + M   G  PDV ++  +  L A     SR    V  L+++LE 
Sbjct: 240 GCCRRLGSITDAERVLEIMSAIGVSPDVESFGCLAFLYAWRDVPSR----VDELDKLLEA 295

Query: 122 MGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +G +     F++LV+ Y+     E ++  I++ ++E R      +R+           G+
Sbjct: 296 LGFSK-KIFFKNLVSGYLKCCSFESVSSIILRTLKERR------VRD-----------GN 337

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             DD+                              YT + + +++ GR+ +  +++  ++
Sbjct: 338 AFDDE-----------------------------CYTEVAQCFVDNGRIKELAQLI--IQ 366

Query: 241 RQEDNASHPDHVTYTTV----VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            QE   +    V   +V    V+A V  G + +A  +L EMT  G       Y+ +LK Y
Sbjct: 367 AQEIELTQQSLVVDDSVGFGIVNACVGLGLLSKAHSILDEMTAQGASVGLGIYSPILKAY 426

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++ +  +A +L+ E+   A ++ D  SY+ LID  +   D   A T F +MR   +   
Sbjct: 427 CKEQKTAEAAQLVAEITA-AGLQLDAGSYDALIDASMTAHDFQSAFTLFKDMREARVPNL 485

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           + SY T+M     +++P+L     D ++ DPR+++    WN ++  +C++G +E+A+R  
Sbjct: 486 RTSYLTIMTGLTENNRPELMASFLDSVVDDPRIEIATHDWNSIIHAFCKVGRLEDARRTY 545

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
            RM    F PN  TY SL NG   A K    L+LW       EV+++G N          
Sbjct: 546 RRMVFLIFEPNNQTYLSLINGYLSAEKYFNVLILWT------EVRRKGANF--------- 590

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
            + EL+DA     V+  FF  A++++   +E  I  +K ++K+ ++E H ++  +K    
Sbjct: 591 -NHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFVDKWRHKQAFMETHKKLKVAK---- 645

Query: 537 ARQDRRRERKRAAEAFKFWLGL 558
             + R   +  A  AFK W GL
Sbjct: 646 -LRKRNFRKMEALIAFKNWAGL 666


>gi|255542030|ref|XP_002512079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549259|gb|EEF50748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 650

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 222/507 (43%), Gaps = 66/507 (13%)

Query: 55  KPDTAAYNAVLNACAN-LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A N  L  C   +        + + M   G KPD +++  +  L A    +  +V
Sbjct: 205 KPDLGACNLALECCCEEIESVSDADNVIEIMSVLGIKPDEMSFGFLAYLYALKGLQDRIV 264

Query: 114 FVLERILEMGITLCMTTFQS-LVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLE 171
             L+ ++E    L    F S L+  YV  G+LE ++ TI+ ++RE               
Sbjct: 265 -ELKSLMEGFSVLNKRLFYSNLIRGYVKSGNLESVSATIICSLRE--------------- 308

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                       +DE                    K +  N   Y  ++KG++ +G +  
Sbjct: 309 ------------EDE--------------------KNYNINEETYCEVVKGFLKDGSLKG 336

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              ++   R+ E ++   D      V++A V  G  D+A  +L EM   G       Y  
Sbjct: 337 LANLIIEARKLEPDSIEIDKSISFGVINACVNLGLSDKAHSILDEMDAKGGSVGFGVYVP 396

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           +LK YC++ +  +A +L+ E+++   ++ D  SY+ LI+  +   D   A T F +MR  
Sbjct: 397 ILKAYCKEGRTAEATQLVMEISN-LGLQLDAGSYDALIEASMTSQDFQSAFTLFRDMRES 455

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
                K SY T+M     + +P+L     DE++ DPR++V    WN ++  +C+ G +E+
Sbjct: 456 RSPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVKTHDWNSIIHAFCKAGRLED 515

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           AKR   RM    F PN  TY SL NG   A K    L+LW EIK R    KE        
Sbjct: 516 AKRTFRRMIFLQFEPNDQTYLSLINGYVTAEKYFSVLMLWSEIKRRVSNDKE-------- 567

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTS 531
               K D+ L+DA     V+  FF   +++V   +E  I  +K KYK+ ++E H ++  S
Sbjct: 568 -KSFKFDQNLVDAFLYALVKGGFFDAVMQVVEKSQEMKIFVDKWKYKQAFMETHKKLKVS 626

Query: 532 KHASQARQDRRRERKRAAEAFKFWLGL 558
           K      + R   +  A  AFK W GL
Sbjct: 627 K-----LRKRNFRKMEALIAFKNWAGL 648


>gi|224098970|ref|XP_002311339.1| predicted protein [Populus trichocarpa]
 gi|222851159|gb|EEE88706.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 139/506 (27%), Positives = 226/506 (44%), Gaps = 65/506 (12%)

Query: 55  KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A N  L  C   L    +  ++ + M   G KPD L++  +  L A    +  ++
Sbjct: 210 KPDMDACNVALEGCCCELESVSEAEKVIETMSVLGIKPDELSFGFLAYLYALKGFQDKII 269

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLED 172
            +   +   G +     F  L+  YV  G  E ++ETI++++RE                
Sbjct: 270 ELNGLMSGFGFSNKKLFFSYLIRGYVKSGSFEAVSETILRSLRE---------------- 313

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                +G  D             +N S E              Y  ++KG+M +G +   
Sbjct: 314 -----QGGLD-------------LNFSEET-------------YCQVVKGFMKDGGIKGL 342

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             ++   ++ E      D  T   ++SA V     D+A  ++ EM   G       +  +
Sbjct: 343 ANLIIEAQKLESATIAADKSTGFGIISACVNLRLSDKAHSIVDEMDAQGGSVGLGVFLPI 402

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           LK YC++ +  +A +L+ ++++   ++ D  SY+ LI+  +   D   A T F +MR  G
Sbjct: 403 LKAYCKEYRTAEATQLVMDISNKG-LQLDEGSYDALIEASMTSQDFQSAFTLFRDMR-EG 460

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           IA  K SY T+M       +P+L     DE++ DPRV+V    WN ++  +C+ G +E+A
Sbjct: 461 IAELKGSYLTIMTGLMEKQRPELMAAFLDEIVEDPRVEVKTHDWNSIIHAFCKAGRLEDA 520

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           KR   RM    F PN  TY SL NG   A K    L+LW E+K +    KE         
Sbjct: 521 KRTFRRMTFLQFEPNDQTYLSLINGYVTAEKYFGVLMLWNEVKRKVSPDKE--------- 571

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             +K D+ L+DA     V+  FF   +++V   +E  I  +K +YK+ ++E H ++  SK
Sbjct: 572 KGIKFDQSLVDAFLYAMVKGGFFDAVMQVVEKSQEMKIFVDKWRYKQAFMESHKKLKVSK 631

Query: 533 HASQARQDRRRERKRAAEAFKFWLGL 558
              + R  R+ E   A  AFK W+GL
Sbjct: 632 L--RKRNFRKME---ALIAFKNWVGL 652


>gi|449458514|ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Cucumis sativus]
 gi|449503826|ref|XP_004162196.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Cucumis sativus]
          Length = 796

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 154/615 (25%), Positives = 273/615 (44%), Gaps = 77/615 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVV----KRV--RKFSDPDIVSDS 54
           +++  +L  V AWS +++ ++ +G    + +  + ++       RV  RK  +  +++  
Sbjct: 201 LIKMEHLLPVAAWSAILAHMSQTGPGAFLAAELILEIGYLFQDGRVDPRKKCNAPLIA-M 259

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP++ A+N  L+ C   G  +K  +L D M   G K D     VM+ +  R  R+  L  
Sbjct: 260 KPNSTAFNIALSGCVLFGTTRKAEELLDMMPRIGVKVDTNLLMVMVHIYERNGRREELK- 318

Query: 115 VLERILEMGITLCMTTFQS----LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
            L+R ++    L    F+     L+  ++ FGDLE A  +V  M    +     +    L
Sbjct: 319 KLQRHIDEAHNLSDVQFRQFYSCLLTCHLKFGDLESASNMVLGMLRKAKIAKNSVATATL 378

Query: 171 EDYSSENE-----GDDDD----------------------DDEVFEKLLPNSINPSSEPP 203
              ++EN      G D +                      DD V +K   N +    E  
Sbjct: 379 ACNTAENHIKPSSGKDSEKNFICQNDGLKDKISNGKSIFFDDFVLDK---NFLKLDIEAK 435

Query: 204 LLPKTF------------------APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            + +T                    P   I   L++ ++  G+  D  + L    R+E  
Sbjct: 436 EILRTLLTKLQLQVELVTTERGILQPTEAILVKLVRAFLEAGKTKDLAQFLIKAEREESP 495

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
            S+ D V    V++A +  G +D+A  +L EM   GV      Y  LLK YC+  +  + 
Sbjct: 496 VSNDDSV-LVHVINACISLGWLDQAHDLLDEMHLAGVRTGSSVYGSLLKAYCKANRTREV 554

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT-KISYTTLM 364
             LLR+ A  A I+ D   Y+ LI+  +L +D+ GAL FF EM+   I  +    +  L+
Sbjct: 555 ASLLRD-ARKAGIQLDSSCYDALINSRVLQNDNKGALKFFQEMKEAKIPRSGHQEFRRLV 613

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           +  A + +  L  K+  E+    RV   +  WN ++  +C+  L+++A++ +++M+  G 
Sbjct: 614 EKSAENDEAGLMAKLLQEIKDGQRVDYGLHDWNNVIHFFCKKRLMQDAEKALKKMRSLGH 673

Query: 425 YPNVATYGSLANGIS-LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
            PN  T+ S+  G + +  K  E   LW E+K                   LK D+ELLD
Sbjct: 674 CPNAQTFHSMVTGYAAIGGKYVEVTELWGEMKSIAS------------ASFLKFDQELLD 721

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRR 543
           ++    VR  FF +A E+V  ME+  +  +K KY+ ++++ H  ++  K A + + + + 
Sbjct: 722 SVLYTFVRGGFFARANEVVEVMEKDKMFIDKYKYRTLFLKYHRTLYKGK-APKFQTEAQL 780

Query: 544 ERKRAAEAFKFWLGL 558
            ++    AFK W+GL
Sbjct: 781 RKRETTLAFKKWVGL 795


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 238/474 (50%), Gaps = 43/474 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PDT  +N +LN      +  + L+L D+M E G KP ++T N ++  LC        +V
Sbjct: 155 EPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV 214

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            + +R++E G      T+  ++      G   +A  +++ M E  R++     +LD   Y
Sbjct: 215 LI-DRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE--RNI-----KLDAVKY 266

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S   +G   D        L N+ N  +E  +  K F  +   Y TL+ G+ N GR  D  
Sbjct: 267 SIIIDGLCKDGS------LDNAFNLFNEMEI--KGFKADIITYNTLIGGFCNAGRWDDGA 318

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           ++L  M +++     P+ VT++ ++ + VK G +  A Q+L EM + G+  N ITYN L+
Sbjct: 319 KLLRDMIKRK---ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLI 375

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C++ ++++A +++  M      +PD++++NILI+G+   +     L  F EM  RG+
Sbjct: 376 DGFCKENRLEEAIQMVDLMISKG-CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               ++Y TL++ F  S + ++A K+F EM+   RV+ DIV++ +L++G C  G +E+A 
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMV-SRRVRPDIVSYKILLDGLCDNGELEKAL 493

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            I  +++++    ++  Y  + +G+  A K  +A  L+      C +  +GV  D+    
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF------CSLPLKGVKLDARAYN 547

Query: 474 PLKPDEELLDAL--ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
            +  +    D+L  ADI      FRK       M E G  P++  Y  I +  H
Sbjct: 548 IMISELCRKDSLSKADI-----LFRK-------MTEEGHAPDELTY-NILIRAH 588



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 37/345 (10%)

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
           S+   ++   + P++ I+ TL+ G   E RVS+ + ++    R  +    P  +T  T+V
Sbjct: 144 STMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVD---RMVEMGHKPTLITLNTLV 200

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + L   G +  A  ++  M   G   N +TY  +L   C+  Q   A ELLR+M ++  I
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-EERNI 259

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           + D V Y+I+IDG         A   FNEM  +G     I+Y TL+  F  + +     K
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAK 319

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +  +M++  ++  ++V +++L++ + + G + EA ++++ M + G  PN  TY SL +G 
Sbjct: 320 LLRDMIK-RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
               +  EA+ +                 D  +     PD    + L +   +A      
Sbjct: 379 CKENRLEEAIQM----------------VDLMISKGCDPDIMTFNILINGYCKANRIDDG 422

Query: 499 LEIVACMEEHGIPPNKTKY----------------KKIYVEMHSR 527
           LE+   M   G+  N   Y                KK++ EM SR
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 135/336 (40%), Gaps = 58/336 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  YN++++      + ++ +Q+ D M   G  PD++T+N++I    +A+R    + +
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G+     T+ +LV  +   G LE+A+ + Q M                     
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM--------------------- 464

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                        + +   P+   Y  L+ G  + G +   + +
Sbjct: 465 -----------------------------VSRRVRPDIVSYKILLDGLCDNGELEKALEI 495

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G +   E +    D   Y  ++  +  A  +D A  +   +   GV  +   YNI++  
Sbjct: 496 FGKI---EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISE 552

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C++  + KA  L R+M ++    PD ++YNILI   +  DD+  A     EM++ G  P
Sbjct: 553 LCRKDSLSKADILFRKMTEEGH-APDELTYNILIRAHLGDDDATTAAELIEEMKSSGF-P 610

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
             +S T  M    LSS     +K F +ML   R  +
Sbjct: 611 ADVS-TVKMVINMLSSGE--LDKSFLDMLSTTRASL 643



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 2/171 (1%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           I +N L     +  Q +    L ++M +   I   + + +I+I+ F      + A +   
Sbjct: 89  IDFNRLFSAIAKTKQYELVLALCKQM-ESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMG 147

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           ++   G  P  + + TL+    L  +   A ++ D M+     K  ++  N LV G C  
Sbjct: 148 KIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH-KPTLITLNTLVNGLCLN 206

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G V +A  +I+RM E GF PN  TYG + N +  + +   A+ L ++++ER
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER 257



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 24/224 (10%)

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
           ++ D A +L R+M     + P V+ +N L             L    +M ++GIA +  +
Sbjct: 67  IKADDAVDLFRDMIQSRPL-PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYT 125

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            + ++  F    +   A     ++++   +P    D V +N L+ G C    V EA  ++
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEP----DTVIFNTLLNGLCLECRVSEALELV 181

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           +RM E G  P + T  +L NG+ L  K  +A++L   + E                   +
Sbjct: 182 DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE----------------TGFQ 225

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           P+E     + ++  ++     A+E++  MEE  I  +  KY  I
Sbjct: 226 PNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 228/522 (43%), Gaps = 53/522 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P++  ++T+V  L  +G          FD  ++ + +  D   V    PD   
Sbjct: 70  MQAKGCKPNLWTYNTLVDCLGKAGQ---------FDEALRLLAEMRDNGCV----PDVRT 116

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     G+  +   LF +M E G  PD  TYN +I    +  R    + +LE + 
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME 176

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-DVCKIIRELDLEDYSSENE 178
             G    + T+ SL+      G+   A  + Q M R GR+ D       +D    +    
Sbjct: 177 RHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMD----ALGKA 232

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G  DD  E+ +++    + P                 Y  L+ G+   G+V D V     
Sbjct: 233 GRVDDALELLDEMKERGVKP-------------GVVTYNALIAGF---GKVGDLVEAYNL 276

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           +   + N   PD VTY+ +++ L+KA  +D A QVL +M + G P + ITYN L+ G  +
Sbjct: 277 LDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGK 336

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
              ++ A  L   M       PDVV+Y+ LI           A   F EM + GI P   
Sbjct: 337 AGLLNDAGRLFDRMKSKG-CNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLF 395

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y +++     + Q   A+++F EM R   +  D++ +N  +    R G  +EA++I E 
Sbjct: 396 TYCSIITVLGKAGQVDDADRLFSEM-RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFED 454

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           MKE+G  P+VATY +L  G+S  ++  +A  L KE+ E      +G   DS     LK D
Sbjct: 455 MKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIE------QGCAFDS-----LKFD 503

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           E L     +I        +A E++      G+ P  + Y  +
Sbjct: 504 ECL-----EILTSWGNVDEAHELLQFANSKGLWPGASSYNAL 540



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 222/489 (45%), Gaps = 39/489 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN++LNA A  G+ ++   LF+++      PDV++Y+ +I    RA +    + V
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  +   G    + T+ +LV      G  + A  ++  MR+        +R  +    + 
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRD--NGCVPDVRTYNCLISTL 124

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   +   +F ++         E   +P TF  NS IY     G    GR    + +
Sbjct: 125 GKAGRLSEAFTLFAEM--------RERGCVPDTFTYNSLIY-----GLGKVGRSQKAMEL 171

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M R   +   PD +TY+++++ L K G   +A ++  EM R G   + IT+  L+  
Sbjct: 172 LEEMER---HGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDA 228

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +  ++D A ELL EM +   ++P VV+YN LI GF  + D   A    +EM+  G  P
Sbjct: 229 LGKAGRVDDALELLDEMKERG-VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKP 287

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y+ L+     +SQ   A +V  +M ++     D + +N L+ G  + GL+ +A R+
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEG-CPPDTITYNTLINGLGKAGLLNDAGRL 346

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE---------RCEV----KK 462
            +RMK  G  P+V TY +L   +  A +   A +L++E++           C +     K
Sbjct: 347 FDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGK 406

Query: 463 EGVNADSDL------PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
            G   D+D          L PD    +A  +   R   F++A +I   M+E G+ P+   
Sbjct: 407 AGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVAT 466

Query: 517 YKKIYVEMH 525
           Y  + + + 
Sbjct: 467 YDALLLGLS 475



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 191/441 (43%), Gaps = 63/441 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y++++      G+  K  +LF +M   G KPD +T+  ++    +A R    + +
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL 241

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ + E G+   + T+ +L+A +   GDL  A  ++  M+   R+ CK     D+  YS 
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMK---RNGCKP----DVVTYSC 294

Query: 176 ENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
              G       D+  +V +K+         E    P    P++  Y TL+ G    G ++
Sbjct: 295 LITGLIKASQLDEACQVLKKM---------EKEGCP----PDTITYNTLINGLGKAGLLN 341

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D  R+   M+ +     +PD VTY+T+++AL KA  ++ A  +  EM  +G+  +  TY 
Sbjct: 342 DAGRLFDRMKSK---GCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYC 398

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++    +  Q+D A  L  EM     + PDV++YN  ++          A   F +M+ 
Sbjct: 399 SIITVLGKAGQVDDADRLFSEMRGKG-LSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE 457

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP----RVKVD-----IVAW----- 396
            G+ P   +Y  L+   + + +   A  +  E++        +K D     + +W     
Sbjct: 458 SGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDE 517

Query: 397 --------------------NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
                               N L++   + G V EA   +E +KE G  P++ +Y SL +
Sbjct: 518 AHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLIS 577

Query: 437 GISLARKPGEALLLWKEIKER 457
            +    +   A  L +E+ +R
Sbjct: 578 ALGQTGQIDTAFELLEEMSKR 598



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 151/331 (45%), Gaps = 26/331 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           +PN   Y +L+      G+  +   +   ++  +     PD V+Y+ ++++L +AG  + 
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAK---WTPDVVSYSCLINSLGRAGKWEA 62

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V+AEM   G   N  TYN L+    +  Q D+A  LL EM D+  + PDV +YN LI
Sbjct: 63  ALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCV-PDVRTYNCLI 121

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
                    + A T F EMR RG  P   +Y +L+       + + A ++ +EM R    
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG-C 180

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D++ ++ L+ G  + G   +A ++ + MK  G  P+  T+ +L + +  A +  +AL 
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALE 240

Query: 450 LWKEIKERCEVKK---------EGVNADSDLPPP-----------LKPDEELLDALADIC 489
           L  E+KER  VK           G     DL               KPD      L    
Sbjct: 241 LLDEMKER-GVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGL 299

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++A+   +A +++  ME+ G PP+   Y  +
Sbjct: 300 IKASQLDEACQVLKKMEKEGCPPDTITYNTL 330



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 17/227 (7%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+VV+YN L++          A   F E++A    P  +SY+ L+ +   + + + A +V
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             EM +    K ++  +N LV+   + G  +EA R++  M++NG  P+V TY  L + + 
Sbjct: 67  VAEM-QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
            A +  EA  L+ E++ER  V                PD    ++L     +    +KA+
Sbjct: 126 KAGRLSEAFTLFAEMRERGCV----------------PDTFTYNSLIYGLGKVGRSQKAM 169

Query: 500 EIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERK 546
           E++  ME HG PP+   Y  +   +     T K     ++ +RR RK
Sbjct: 170 ELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRK 216



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 155/370 (41%), Gaps = 42/370 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDT 58
           M R+G  P V  +S +++        G +++ +L +   V+K++ K   P       PDT
Sbjct: 280 MKRNGCKPDVVTYSCLIT--------GLIKASQLDEACQVLKKMEKEGCP-------PDT 324

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YN ++N     G      +LFD+M   G  PDV+TY+ +I    +A+R      + E 
Sbjct: 325 ITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEE 384

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR---DVCKIIRELDLEDYSS 175
           +  +GI   + T+ S++      G ++ A+ +   MR G+    DV      L+    S 
Sbjct: 385 MESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMR-GKGLSPDVITYNAFLN----SL 439

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   +  ++FE +         E  LLP     +   Y  L+ G      V D   +
Sbjct: 440 GRGGRFKEARKIFEDM--------KESGLLP-----DVATYDALLLGLSKTKEVDDACGL 486

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +  Q       D + +   +  L   G++D A ++L      G+     +YN L+  
Sbjct: 487 LKELIEQ---GCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDA 543

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +  ++ +A   L ++ +    +PD+VSY+ LI           A     EM  RG+  
Sbjct: 544 LAKAGRVSEAFNTLEDLKEQGG-KPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKL 602

Query: 356 TKISYTTLMK 365
           +  SY+ L++
Sbjct: 603 SPRSYSNLVR 612


>gi|414880174|tpg|DAA57305.1| TPA: hypothetical protein ZEAMMB73_061992 [Zea mays]
          Length = 680

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 140/570 (24%), Positives = 249/570 (43%), Gaps = 88/570 (15%)

Query: 1   MLRSGY-LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           MLR G  LP    W   +  L  +        + LFD   K V +   P   +  +PD A
Sbjct: 185 MLRCGRRLPAFSVWGHPLIELTRTDPGAFAAFLTLFDEACKLVVEEKSPAEAAAMRPDRA 244

Query: 60  AYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
           A N+VL+ C   LG      ++ + M   G  PDV ++  +  L A          V  R
Sbjct: 245 ACNSVLSGCCRGLGSLADAERVLETMSAVGVSPDVESFGCLAFLYAWRG-------VPSR 297

Query: 119 ILEMGITLCMTTF------QSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLE 171
           + E+        F      ++LV+ Y+  GD E ++  I++A+++ R             
Sbjct: 298 VDELDTLFDALGFSKKGFFKNLVSGYLKSGDFESVSPIILRAVKDRR------------- 344

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                  GDD+  DE                             YT + + +++  R+ +
Sbjct: 345 ------VGDDNGLDE---------------------------ETYTEVAQCFVDRARIRE 371

Query: 232 TVRML---GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
             +++     +   + + S  D V +  +V+A V+ G +++A  +L EMT  G       
Sbjct: 372 LAQLIIQAHEIELAQQSISVEDSVGFG-IVNACVELGLLNKAHSILDEMTAQGASVGLGV 430

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y+ +LK YC++ +  +A +L+ E++  A ++ D  SY+ LID  +   D   A   F +M
Sbjct: 431 YSSILKAYCKEQKTAEAAQLVAEISA-AGLQLDAGSYDALIDASMTAHDFQSAFALFKDM 489

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
           R   +   + SY T+M     +++P L     D ++ DPR+++    WN ++  +C++G 
Sbjct: 490 REARLPELRTSYLTIMTGLTENNKPGLMASFLDSVVDDPRIEIATHDWNSIIHAFCKVGR 549

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           +++A+R   RM    F PN  TY SL NG     K    L+LW E++ R           
Sbjct: 550 LDDARRTYRRMVFLRFEPNNQTYLSLINGYVSTEKYFSVLILWTEVRRR----------- 598

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
                 ++ + EL+DA     V+  FF  A++++   +E  I  +K +YK+ ++E H ++
Sbjct: 599 -----GIEFNHELIDAFLYALVKGGFFDMAMQVIEKAQEFKIFIDKWRYKQAFMETHKKL 653

Query: 529 FTSKHASQARQDRRRERKRAAEAFKFWLGL 558
             +K      + R   +  A  AF+ W G+
Sbjct: 654 KVAK-----LRKRNFRKMEALVAFRNWAGI 678


>gi|218189191|gb|EEC71618.1| hypothetical protein OsI_04035 [Oryza sativa Indica Group]
          Length = 670

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 146/568 (25%), Positives = 261/568 (45%), Gaps = 83/568 (14%)

Query: 1   MLRSGY-LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR-VRKFSDPDIVSDSKPDT 58
           +LR G  LP   AW + +  L  +     V  +K+FD   K+ V +   P   +  +PD 
Sbjct: 174 LLRCGRRLPGFPAWGSPLIELTRADTGAFVAFLKVFDEACKQMVAEEKSPSAAAAMRPDL 233

Query: 59  AAYNAVLNACANL-GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR---ASRKHLLVF 114
           AA NAVL  C  L G   +  ++ + M   G  PDV ++  +  L A     SR    V 
Sbjct: 234 AACNAVLGGCCRLLGSVTEAERVLEIMSVIGVSPDVDSFGCLAFLYAWRDIPSR----VD 289

Query: 115 VLERILE-MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            L+++L+ +G +  +  F++L++ Y+     E   +++  + E RR              
Sbjct: 290 ELDKLLDALGFSKKIF-FKNLISGYLKSCSFESVSSVILRVLEERR-------------- 334

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                GD             N+ +  S               YT + + +++ GR+ +  
Sbjct: 335 ----VGDS------------NAFDLES---------------YTEVAQCFVDNGRIRELA 363

Query: 234 RMLGAMRRQED---NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +++   +  E    + +  D V +  +V+A V+ G +++A  +L EMT  G       Y+
Sbjct: 364 QLIIKAQETESLQQSLAVEDSVGFG-IVNACVELGLLNKAHSILDEMTAQGASVGLGVYS 422

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            +LK YC++ +  +A +L+ E++  A ++ D  SY+ LID  +   D   A + F EMR 
Sbjct: 423 SILKAYCKEQRTAEAAQLVSEISA-AGLQLDAGSYDALIDASMTAHDFLSAFSLFKEMRE 481

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             +   + SY T+M     +++P+L     D ++ DPR+++    WN ++  +C++G +E
Sbjct: 482 ARLPDLRTSYLTIMTGLTENNRPELMASFLDTVVDDPRIEIATHDWNSIIHAFCKVGRLE 541

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A+R   RM    + PN  TY SL NG   A K    L+LW E++ +         AD  
Sbjct: 542 DARRTYRRMVFLRYEPNNQTYLSLINGYVSAEKYFSVLILWTEVRRK--------GADF- 592

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
                  + EL+DA     V+  FF  A++++   +E  I  +K ++K+ ++E H ++  
Sbjct: 593 -------NHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWRHKQAFMETHKKLKV 645

Query: 531 SKHASQARQDRRRERKRAAEAFKFWLGL 558
           +K      + R   +  A  AFK W GL
Sbjct: 646 AK-----LRKRNFRKMEALIAFKNWAGL 668


>gi|224082666|ref|XP_002306785.1| predicted protein [Populus trichocarpa]
 gi|222856234|gb|EEE93781.1| predicted protein [Populus trichocarpa]
          Length = 750

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 152/608 (25%), Positives = 261/608 (42%), Gaps = 78/608 (12%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVV-------VKRVRKFSDPDIVSDSKPDTAA 60
           P V AWS +++ ++ +     + +  + ++        V   +K + P I    KP+T A
Sbjct: 163 PPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKINAPLIAM--KPNTIA 220

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N  L  C   G  +K  QL D M   G + D     +M  +  R  R+  L   L+R +
Sbjct: 221 MNIALTGCLLFGTTRKAEQLLDMMPRIGIRADTNLLIIMAHIYERNGRREELR-KLQRHI 279

Query: 121 EMGITLCMTTFQS----LVAAYVGFGDLEIAETIVQAM----REGRRDVCKI-------- 164
           +   +L  T F+     L+  ++ FGDL+ A  +V  M    RE R              
Sbjct: 280 DDSQSLTDTQFRQFYNCLLTCHLKFGDLDAASNMVLIMLRKAREARNSFATAALLFPIDK 339

Query: 165 ------IRELDLEDYSSENEGD-----------------------DDDDDEVFEKLLPNS 195
                 + E  L    S   G+                       D +  EV   LL   
Sbjct: 340 KSSPGPVSEESLSHKESGGLGNNRSNKDLTISYEEFYRDRNFLKLDTEAKEVLSTLL--- 396

Query: 196 INPSSEPPLLPK---TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
           +    +  L+        P  +IY  L+K ++  G+  +    L    +++  AS+ D  
Sbjct: 397 VELQMQVELITTERGILQPTEKIYVKLVKAFLESGKTKELAAFLIKAEKEDSPASNDDSA 456

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
               V+++ +  G +D+A  +L EM   G+  +   Y  LLK YC+  Q  +   LLR+ 
Sbjct: 457 -LVHVINSCISLGWLDQAHDLLDEMCLAGIRTSSSVYASLLKAYCKANQTGEVTALLRD- 514

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALSS 371
           A  A I+ D  SYN LI+  ++  D+  AL  F EM+   I  T    +  L+K  A   
Sbjct: 515 ARRAGIQLDSSSYNALIEFRVIQKDTKEALHIFKEMKEAKIPRTGHQEFEMLVKGCAEGG 574

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +  L  K+  E+  +      +  WN ++  +C+  L+++A++ +++M+  G  PN  T+
Sbjct: 575 EAGLMAKLLQEIKEEQAADSGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHAPNAQTF 634

Query: 432 GSLANGIS-LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
            S+  G + +  K  E   LW E+K                   +K D+ELLD++    V
Sbjct: 635 HSMVTGYAAIGGKYIEVTELWGEMKSIASA------------TSMKFDQELLDSVLYTFV 682

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAE 550
           R  FF +A E+V  ME+  +  +K KY+ +Y++ H  ++  K   + + +   +++ AA 
Sbjct: 683 RGGFFSRANEVVDMMEKGKMFIDKYKYRTLYLKYHKTLYKGK-TPKIQTESLVKKREAAL 741

Query: 551 AFKFWLGL 558
            FK WLGL
Sbjct: 742 TFKKWLGL 749


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 223/485 (45%), Gaps = 41/485 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN ++N    + K  +   L  +M E G  P+V+TY+ +I    R ++      +
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCK 163
             +++E G    + T+ +L++     G ++ A  ++  MRE G +            +CK
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 278

Query: 164 IIR-ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS---SEPPLLPK----TFAPNSRI 215
             + ++ L+ +   + GD   D   +  L+              L  K    +  P+   
Sbjct: 279 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVT 338

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +T LM G     R+ +  ++L  M   ED    P+ +TY++++  L K G +  A++V  
Sbjct: 339 FTALMDGLCKGDRLQEAQQVLETM---EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 395

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G+  N +TYN L+ G+C    +D A  L+ EM     + PD+++YN LIDG    
Sbjct: 396 RMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL-PDIITYNTLIDGLCKT 454

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             +  A   F +M+A+   P  I+Y+ L+  F    +  +A  +FD+ML+   V  D+V 
Sbjct: 455 GRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA-VLPDVVT 513

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ LVEGYC  GLV++A+R++E M  +   P+V TY SL +G     +  EA  + K + 
Sbjct: 514 FSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMA 573

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +R                  +P+     AL D   RA     A  ++  M  +G+ PN  
Sbjct: 574 KR----------------GCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVI 617

Query: 516 KYKKI 520
            Y+ +
Sbjct: 618 TYRSL 622



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 225/479 (46%), Gaps = 43/479 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G +P++  ++T++S L  +G     E+ +L D + +R             +PD  +
Sbjct: 222 MVENGCMPNLVTYNTLLSGLCRNGLMD--EAYELLDEMRER-----------GLQPDKFS 268

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++      GK    L++F+        PDV+ Y+ +I    +A R      + E++ 
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMR 328

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E      + TF +L+        L+ A+ +++ M E R     +I    L D   +  G 
Sbjct: 329 ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM-EDRNCTPNVITYSSLIDGLCKT-GQ 386

Query: 181 DDDDDEVFEKLLPNSINPS------------------SEPPLLPKTFA----PNSRIYTT 218
             D  EVF++++   I P+                  S   L+ +  A    P+   Y T
Sbjct: 387 VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 446

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G    GR  +  R+ G M+ +  N   PD +TY+ ++    K   +D AR +  +M 
Sbjct: 447 LIDGLCKTGRAPEANRLFGDMKAKFCN---PDVITYSCLIGGFCKLERIDMARTLFDDML 503

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           +  V  + +T++ L++GYC    +D A+ LL EM   +   PDV +Y  L+DGF  +   
Sbjct: 504 KQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV-ASDCSPDVYTYTSLVDGFCKVGRM 562

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A      M  RG  P  ++YT L+ AF  + +P +A ++ +EM+ +  V+ +++ +  
Sbjct: 563 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNG-VQPNVITYRS 621

Query: 399 LVEGYCRMGLVEEAKRIIERM-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           L+ G+C  G +EEA++I+ER+ ++     ++  Y  + +G+    +   AL L + IK+
Sbjct: 622 LIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQ 680



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 173/421 (41%), Gaps = 61/421 (14%)

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G   +V TYN + +   RA R      +L+     GIT  + T+  ++      GDL+ A
Sbjct: 19  GFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKA 78

Query: 148 ETIVQAMREGR------------RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNS 195
             +++ MRE                +CK        DY    E + +    +   ++ + 
Sbjct: 79  CELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKN---VITWTIMIDG 135

Query: 196 INPSSEPPLLPKTFA--------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           +  ++  P     FA        PN   Y  L+ G+    +V     +L  M+   ++  
Sbjct: 136 LCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK---ESGL 192

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P+ VTY+TV+    +   +D A ++  +M   G   N +TYN LL G C+   +D+A E
Sbjct: 193 APNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYE 252

Query: 308 LLREMAD----------------------------------DAKIEPDVVSYNILIDGFI 333
           LL EM +                                  +    PDVV+Y+ LI G  
Sbjct: 253 LLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLC 312

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A   F +MR     P  +++T LM       + + A +V  E + D     ++
Sbjct: 313 KAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL-ETMEDRNCTPNV 371

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           + ++ L++G C+ G V +A+ + +RM   G  PNV TY SL +G  +      ALLL +E
Sbjct: 372 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEE 431

Query: 454 I 454
           +
Sbjct: 432 M 432



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 184/421 (43%), Gaps = 43/421 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  +S+++  L  +G       V+    V KR+       IV   +P+   YN++++ 
Sbjct: 369 PNVITYSSLIDGLCKTG------QVRDAQEVFKRM-------IVRGIEPNVVTYNSLIHG 415

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC--ARASRKHLLVFVLERILEMGI 124
                     L L ++M   G  PD++TYN +I  LC   RA   + L        +M  
Sbjct: 416 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG------DMKA 469

Query: 125 TLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
             C   + T+  L+  +     +++A T+   M +       +     +E Y   N G  
Sbjct: 470 KFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC--NAGLV 527

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DD + + E+++ +               +P+   YT+L+ G+   GR+ +  R+L   +R
Sbjct: 528 DDAERLLEEMVASDC-------------SPDVYTYTSLVDGFCKVGRMVEARRVL---KR 571

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                  P+ VTYT ++ A  +AG    A ++L EM   GV  N ITY  L+ G+C    
Sbjct: 572 MAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGD 631

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +++A+++L  +  D   + D+ +Y +++DG       + AL     ++  G  P    Y 
Sbjct: 632 LEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYV 691

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L++      +   A +V +EM    + + +  A+  +++   R G  EEA  + + +  
Sbjct: 692 ALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELLG 751

Query: 422 N 422
           N
Sbjct: 752 N 752



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 47/377 (12%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + F  N   Y  L +  +   R+ +T  +L   +        P+  TY  V+  L K+G 
Sbjct: 18  QGFDHNVYTYNRLFEALLRARRIDETCHIL---KNGWPPGITPNVFTYAVVIQGLCKSGD 74

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D+A ++L EM   G   +   YN ++   C+     KA +  R M    + E +V+++ 
Sbjct: 75  LDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM----ECEKNVITWT 130

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           I+IDG    +    A T+F +M+ +G  P + +Y  L+  F    +   A  +  EM ++
Sbjct: 131 IMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM-KE 189

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  ++V ++ ++ G+CR   V+ A ++  +M ENG  PN+ TY +L +G+       E
Sbjct: 190 SGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDE 249

Query: 447 ALLLWKEIKER----------------CEVKKEGV-------NADSDLPPPLKPDEELLD 483
           A  L  E++ER                C+  K  +       N++ D PP +     L+ 
Sbjct: 250 AYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIA 309

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRR 543
            L     +A    +A ++   M E+   P+               FT+      + DR +
Sbjct: 310 GLC----KAGRLDEACKLFEKMRENSCEPDVVT------------FTALMDGLCKGDRLQ 353

Query: 544 ERKRAAEAFKFWLGLPN 560
           E ++  E  +     PN
Sbjct: 354 EAQQVLETMEDRNCTPN 370


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 224/485 (46%), Gaps = 41/485 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN ++N    + K  +   L  +M E G  P+V+TY+ +I    R ++      +
Sbjct: 40  PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCK 163
             +++E G    + T+ +L++     G ++ A  ++  MRE G +            +CK
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 159

Query: 164 IIR-ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS---SEPPLLPK----TFAPNSRI 215
             + ++ L+ +   + GD   D   +  L+              L  K    +  P+   
Sbjct: 160 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVT 219

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +T LM G     R+ +  ++L  M   ED    P+ +TY++++  L K G +  A++V  
Sbjct: 220 FTALMDGLCKGDRLQEAQQVLETM---EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 276

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G+  N +TYN L+ G+C    +D A  L+ EM     + PD+++YN LIDG    
Sbjct: 277 RMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL-PDIITYNTLIDGLCKT 335

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             +  A   F +M+A+   P  I+Y+ L+  F    +  +A  +FD+ML+   V  D+V 
Sbjct: 336 GRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA-VLPDVVT 394

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ LVEGYC  GLV++A+R++E M  +   P+V TY SL +G     +  EA  + K + 
Sbjct: 395 FSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMA 454

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +R                  +P+     AL D   RA     A +++  M  +G+ PN  
Sbjct: 455 KR----------------GCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVI 498

Query: 516 KYKKI 520
            Y+ +
Sbjct: 499 TYRSL 503



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 225/481 (46%), Gaps = 47/481 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M+ +G +P++  ++T++S L  +G  D    E+ +L D + +R             +PD 
Sbjct: 103 MVENGCMPNLVTYNTLLSGLCRNGLMD----EAYELLDEMRER-----------GLQPDK 147

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
            +Y+ ++      GK    L++F+        PDV+ Y+ +I    +  R      + E+
Sbjct: 148 FSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEK 207

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           + E      + TF +L+        L+ A+ +++ M E R     +I    L D   +  
Sbjct: 208 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM-EDRNCTPNVITYSSLIDGLCKT- 265

Query: 179 GDDDDDDEVFEKLLPNSINPS------------------SEPPLLPKTFA----PNSRIY 216
           G   D  EVF++++   I P+                  S   L+ +  A    P+   Y
Sbjct: 266 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 325

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            TL+ G    GR  +  R+ G M+ +  N   PD +TY+ ++    K   +D AR +  +
Sbjct: 326 NTLIDGLCKTGRAPEANRLFGDMKAKFCN---PDVITYSCLIGGFCKLERIDMARTLFDD 382

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M +  V  + +T++ L++GYC    +D A+ LL EM   +   PDV +Y  L+DGF  + 
Sbjct: 383 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV-ASDCSPDVYTYTSLVDGFCKVG 441

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A      M  RG  P  ++YT L+ AF  + +P +A K+ +EM+ +  V+ +++ +
Sbjct: 442 RMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNG-VQPNVITY 500

Query: 397 NMLVEGYCRMGLVEEAKRIIERM-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             L+ G+C  G +EEA++++ER+ ++     ++  Y  + +G+    +   AL L + IK
Sbjct: 501 RSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIK 560

Query: 456 E 456
           +
Sbjct: 561 Q 561



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 184/421 (43%), Gaps = 43/421 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  +S+++  L  +G       V+    V KR+       IV   +P+   YN++++ 
Sbjct: 250 PNVITYSSLIDGLCKTG------QVRDAQEVFKRM-------IVRGIEPNVVTYNSLIHG 296

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLLVFVLERILEMGI 124
                     L L ++M   G  PD++TYN +I  LC   RA   + L        +M  
Sbjct: 297 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG------DMKA 350

Query: 125 TLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
             C   + T+  L+  +     +++A T+   M +       +     +E Y   N G  
Sbjct: 351 KFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC--NAGLV 408

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DD + + E+++ +               +P+   YT+L+ G+   GR+ +  R+L   +R
Sbjct: 409 DDAERLLEEMVASDC-------------SPDVYTYTSLVDGFCKVGRMVEARRVL---KR 452

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                  P+ VTYT ++ A  +AG    A ++L EM   GV  N ITY  L+ G+C    
Sbjct: 453 MAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGD 512

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +++A+++L  +  D   + D+ +Y +++DG       + AL     ++  G  P    Y 
Sbjct: 513 LEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYV 572

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L++      +   A +V +EM    + + +  A+  +++   R G  EEA  + + +  
Sbjct: 573 ALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELLG 632

Query: 422 N 422
           N
Sbjct: 633 N 633



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 38/282 (13%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   PN   Y  L+ G+    +V     +L  M+   ++   P+ VTY+TV+    +   
Sbjct: 36  KGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK---ESGLAPNVVTYSTVIHGFCRQTK 92

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM-------------- 312
           +D A ++  +M   G   N +TYN LL G C+   +D+A ELL EM              
Sbjct: 93  VDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDT 152

Query: 313 -----ADDAKIE---------------PDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
                    KI+               PDVV+Y+ LI G         A   F +MR   
Sbjct: 153 LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENS 212

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  +++T LM       + + A +V  E + D     +++ ++ L++G C+ G V +A
Sbjct: 213 CEPDVVTFTALMDGLCKGDRLQEAQQVL-ETMEDRNCTPNVITYSSLIDGLCKTGQVRDA 271

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           + + +RM   G  PNV TY SL +G  +      ALLL +E+
Sbjct: 272 QEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 313



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 141/307 (45%), Gaps = 59/307 (19%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ------------- 298
           +T+T ++  L KA  +  A    A+M + G   N  TYN+L+ G+C+             
Sbjct: 8   ITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 67

Query: 299 ----------------------QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI--- 333
                                 Q ++D A +L R+M ++  + P++V+YN L+ G     
Sbjct: 68  MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM-PNLVTYNTLLSGLCRNG 126

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           L+D+   A    +EMR RG+ P K SY TLM     + +  +A KVF++   +     D+
Sbjct: 127 LMDE---AYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN-SNGDCPPDV 182

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           VA++ L+ G C+ G ++EA ++ E+M+EN   P+V T+ +L +G+    +  EA  + + 
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 242

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +++R            +  P +     L+D L     +    R A E+   M   GI PN
Sbjct: 243 MEDR------------NCTPNVITYSSLIDGLC----KTGQVRDAQEVFKRMIVRGIEPN 286

Query: 514 KTKYKKI 520
              Y  +
Sbjct: 287 VVTYNSL 293



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 128/276 (46%), Gaps = 30/276 (10%)

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N IT+ I++ G C+  ++ +A     +M     + P+  +YN+LI+GF  +     A   
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTV-PNEWTYNVLINGFCKVHKVHRAYLL 64

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
             EM+  G+AP  ++Y+T++  F   ++   A K+F +M+ +  +  ++V +N L+ G C
Sbjct: 65  LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMP-NLVTYNTLLSGLC 123

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG 464
           R GL++EA  +++ M+E G  P+  +Y +L  G+    K   AL ++++           
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED----------- 172

Query: 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            N++ D PP +     L+  L     +     +A ++   M E+   P+           
Sbjct: 173 -NSNGDCPPDVVAYSTLIAGLC----KTGRLDEACKLFEKMRENSCEPDVVT-------- 219

Query: 525 HSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPN 560
               FT+      + DR +E ++  E  +     PN
Sbjct: 220 ----FTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 251



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 17/204 (8%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           + E +V+++ I+IDG    +    A T+F +M+ +G  P + +Y  L+  F    +   A
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +  EM ++  +  ++V ++ ++ G+CR   V+ A ++  +M ENG  PN+ TY +L +
Sbjct: 62  YLLLKEM-KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+       EA  L  E++ER                 L+PD+   D L     +     
Sbjct: 121 GLCRNGLMDEAYELLDEMRER----------------GLQPDKFSYDTLMAGLCKTGKID 164

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
            AL++         PP+   Y  +
Sbjct: 165 MALKVFEDNSNGDCPPDVVAYSTL 188


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 229/511 (44%), Gaps = 76/511 (14%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L+ G +P    + T++  L  +G  G  E+  L D +         PD      PDT A+
Sbjct: 493 LKHGLVPDKITYCTLIDGLFRTGRAGQAEA--LLDAM---------PD------PDTYAF 535

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N  +N  + LG   + LQ++++M E    PD +T+N++I    +A        + E ++ 
Sbjct: 536 NCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA 595

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--------------------REGR-RD 160
             +   + TF +L+      G +E A  I+  M                    + GR  +
Sbjct: 596 KNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEE 655

Query: 161 VCKIIREL-------DLEDYSS-------ENEGDDD------------DDDEVFEKLLPN 194
            C+ + E+       D   Y S        +  DD             D D V   +L +
Sbjct: 656 ACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD 715

Query: 195 SINPSSEPP--------LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
            +  S +          ++ K   P+   Y TL+      G + +  R+ G M  +    
Sbjct: 716 GLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRC 775

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR--IGVPANRITYNILLKGYCQQLQIDK 304
             P+ VTY+ +++ L K G +D AR+++ EM R    V  N ITYN  L G C+Q  + +
Sbjct: 776 CVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAE 835

Query: 305 AKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           A EL+R + D + ++ PD V+++ LIDG      +  A   F++M A G  P  ++Y  L
Sbjct: 836 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVL 895

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           M     + + + A+ + + M+ D  V  D++ +++LV+ +C+   V+EA  ++  M   G
Sbjct: 896 MNGLCKTDKMERAHAMIESMV-DKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRG 954

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEI 454
             PNV T+ S+ +G+  + + GEA  ++ ++
Sbjct: 955 CTPNVVTFNSIIDGLCKSDQSGEAFQMFDDM 985



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 201/437 (45%), Gaps = 33/437 (7%)

Query: 5    GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
            G  P+V  ++ +V  L  SG              ++   +F +  + S   PD+  Y ++
Sbjct: 632  GVPPNVVTYNALVHGLCKSGR-------------IEEACQFLEEMVSSGCVPDSITYGSL 678

Query: 65   LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
            + A     +    LQL  ++  FG  PD +TYN+++    ++ +    + VLE ++  G 
Sbjct: 679  VYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGH 738

Query: 125  TLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENEGDDD 182
               + T+ +L+ +    GDLE A  +   M  R  R  V  ++    L +   +  G  D
Sbjct: 739  HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCK-VGRID 797

Query: 183  DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
            +  E+ ++++  S +             PN   Y + + G   +  +++   ++ ++R  
Sbjct: 798  EARELIQEMMRKSCD-----------VLPNIITYNSFLDGLCKQSMMAEACELMRSLRDG 846

Query: 243  EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                S PD VT++T++  L K G  D A  V  +M   G   N +TYN+L+ G C+  ++
Sbjct: 847  SLRVS-PDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKM 905

Query: 303  DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            ++A  ++  M D   + PDV++Y++L+D F        AL   + M +RG  P  +++ +
Sbjct: 906  ERAHAMIESMVDKG-VTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNS 964

Query: 363  LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
            ++     S Q   A ++FD+M     +  D + +  L++G  R G   +A+ +++ M + 
Sbjct: 965  IIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD- 1023

Query: 423  GFYPNVATYGSLANGIS 439
               P+   +    NG+S
Sbjct: 1024 ---PDTYAFNCCINGLS 1037



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 209/487 (42%), Gaps = 50/487 (10%)

Query: 2   LRSGYL---PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           LR G L   P    +ST++  L   G     E+  +FD +           I     P+ 
Sbjct: 349 LRDGSLRVSPDTVTFSTLIDGLCKCGQID--EACSVFDDM-----------IAGGYVPNV 395

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YNA++N      K ++   + + M + G  PDV+TY+V++    +ASR    + +L  
Sbjct: 396 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 455

Query: 119 ILEMGITLCMTTFQSLV----------AAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
           +   G T  + TF S++           A+  F D+ +   +V      +   C +I  L
Sbjct: 456 MASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLV----PDKITYCTLIDGL 511

Query: 169 DLEDYSSENEGDDD---DDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSRIYT 217
                + + E   D   D D        N ++   +          +L     P+   + 
Sbjct: 512 FRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFN 571

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ G    G       +   M  +      PD +T+  ++  L KAG ++ AR +L  M
Sbjct: 572 ILIAGACKAGNFEQASALFEEMVAKN---LQPDVMTFGALIDGLCKAGQVEAARDILDLM 628

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
             +GVP N +TYN L+ G C+  +I++A + L EM     + PD ++Y  L+        
Sbjct: 629 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCV-PDSITYGSLVYALCRASR 687

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
           +  AL   +E+++ G  P  ++Y  L+     S Q + A  V +EM+       D+V +N
Sbjct: 688 TDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGH-HPDVVTYN 746

Query: 398 MLVEGYCRMGLVEEAKRIIERMK---ENGFYPNVATYGSLANGISLARKPGEALLLWKE- 453
            L++  C+ G +EEA+R+   M         PNV TY  L NG+    +  EA  L +E 
Sbjct: 747 TLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEM 806

Query: 454 IKERCEV 460
           +++ C+V
Sbjct: 807 MRKSCDV 813



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 188/407 (46%), Gaps = 40/407 (9%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           ++N  LN     G P K + LF        +P+  TY+ +++   +A         +ER 
Sbjct: 113 SFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGD------VERT 166

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           L          F+ + ++     D  I  +++ +A    R           LE +  E  
Sbjct: 167 LGF--------FRRIRSSSRSVADYNIVLQSLCRAGETARA----------LEIFRGEMA 208

Query: 179 GDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            D      V    + N +  S+E          L+ +   P+   Y TL+      G + 
Sbjct: 209 RDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLE 268

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR--IGVPANRIT 288
           +  R+ G M  +   +  P+ VTY+ +++ L K G +D AR+++ EMTR    V  N IT
Sbjct: 269 EARRLHGDMSSR---SCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 325

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           YN  L G C+Q    +A EL+R + D + ++ PD V+++ LIDG         A + F++
Sbjct: 326 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD 385

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M A G  P  I+Y  L+     + + + A+ + + M+ D  V  D++ +++LV+ +C+  
Sbjct: 386 MIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV-DKGVTPDVITYSVLVDAFCKAS 444

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            V+EA  ++  M   G  PNV T+ S+ +G+  + + GEA  ++ ++
Sbjct: 445 RVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDM 491



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 127/554 (22%), Positives = 231/554 (41%), Gaps = 85/554 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P +  ++T+++ L  S + G    ++LF+ +V+R              PD   
Sbjct: 207 MARDGVAPTIVTYNTIINGLCKSNELGA--GMELFEELVER-----------GHHPDVVT 253

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++++    G  ++  +L   M      P+V+TY+V+I    +  R   +    E I 
Sbjct: 254 YNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGR---IDEARELIQ 310

Query: 121 EMGITLC-----MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           EM    C     + T+ S +           A  +++++R+G   V              
Sbjct: 311 EMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGL 370

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D+   VF+ ++                + PN   Y  L+ G     ++     M
Sbjct: 371 CKCGQIDEACSVFDDMIAGG-------------YVPNVITYNALVNGLCKADKMERAHAM 417

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           + +M    D    PD +TY+ +V A  KA  +D A ++L  M   G   N +T+N ++ G
Sbjct: 418 IESMV---DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 474

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI----------LID--------- 336
            C+  +  +A ++  +MA    + PD ++Y  LIDG            L+D         
Sbjct: 475 LCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYA 534

Query: 337 ------------DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
                       D + AL  +N M    + P K+++  L+     +   + A+ +F+EM+
Sbjct: 535 FNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMV 594

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               ++ D++ +  L++G C+ G VE A+ I++ M   G  PNV TY +L +G+    K 
Sbjct: 595 A-KNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLC---KS 650

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
           G        I+E C+  +E V++         PD     +L     RA+    AL++V+ 
Sbjct: 651 G-------RIEEACQFLEEMVSSGC------VPDSITYGSLVYALCRASRTDDALQLVSE 697

Query: 505 MEEHGIPPNKTKYK 518
           ++  G  P+   Y 
Sbjct: 698 LKSFGWDPDTVTYN 711



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 54/312 (17%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP    Y T++ G      +   + +   +  +     HPD VTY T++ +L KAG ++ 
Sbjct: 213 APTIVTYNTIINGLCKSNELGAGMELFEELVER---GHHPDVVTYNTLIDSLCKAGDLEE 269

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA-DDAKIEPDVVSYNIL 328
           AR++  +M+      N +TY++L+ G C+  +ID+A+EL++EM      + P++++YN  
Sbjct: 270 ARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSF 329

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +DG      +A A      +R   +                                  R
Sbjct: 330 LDGLCKQSMTAEACELMRSLRDGSL----------------------------------R 355

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V  D V ++ L++G C+ G ++EA  + + M   G+ PNV TY +L NG+  A K   A 
Sbjct: 356 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 415

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            + + + ++      GV           PD      L D   +A+   +ALE++  M   
Sbjct: 416 AMIESMVDK------GVT----------PDVITYSVLVDAFCKASRVDEALELLHGMASR 459

Query: 509 GIPPNKTKYKKI 520
           G  PN   +  I
Sbjct: 460 GCTPNVVTFNSI 471



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 7/211 (3%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG-YCQQLQIDKAKELLRE 311
           ++   ++ LVK+GS  +A  +           N  TY+ LL+  Y     +++    L  
Sbjct: 113 SFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERT---LGF 169

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFF-NEMRARGIAPTKISYTTLMKAFALS 370
                     V  YNI++       ++A AL  F  EM   G+APT ++Y T++     S
Sbjct: 170 FRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS 229

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           ++     ++F+E++       D+V +N L++  C+ G +EEA+R+   M      PNV T
Sbjct: 230 NELGAGMELFEELVERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVT 288

Query: 431 YGSLANGISLARKPGEALLLWKEI-KERCEV 460
           Y  L NG+    +  EA  L +E+ ++ C+V
Sbjct: 289 YSVLINGLCKVGRIDEARELIQEMTRKSCDV 319



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 118/276 (42%), Gaps = 31/276 (11%)

Query: 55   KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RASRKHL 111
             PDT  ++ +++     G+  +   +FD M   G  P+V+TYNV++  LC   +  R H 
Sbjct: 851  SPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHA 910

Query: 112  LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVC---KIIR 166
            ++   E +++ G+T  + T+  LV A+     ++ A  ++  M  R    +V     II 
Sbjct: 911  MI---ESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIID 967

Query: 167  ELDLEDYSSENEGDDDDDDEVFEKLLPNSIN-------------PSSEPPLLPKTFAPNS 213
             L   D S E      DD  +   L P+ I                    LL     P++
Sbjct: 968  GLCKSDQSGE-AFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDT 1026

Query: 214  RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
              +   + G    G VS       A+ R  +    PD VT+  +++   KAG+ ++A  +
Sbjct: 1027 YAFNCCINGLSKLGDVSR------ALHRMLELELVPDKVTFNILIAGACKAGNFEQASAL 1080

Query: 274  LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
              EM    +  + +T+  L+ G C+  Q++   +++
Sbjct: 1081 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/519 (24%), Positives = 247/519 (47%), Gaps = 53/519 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M + G  P V  ++T+++ +    ++G ++ +V+L++ +V+           S  +PD  
Sbjct: 154 MFKLGIQPDVITFTTLINGVC---NEGKIKVAVELYNEMVR-----------SGHEPDVI 199

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER 118
           +YN ++N   N G     + +F +M + G KP+V+TYN +I  LC        + F L  
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDF-LSE 258

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           ++  GI     T+ S+V      G L  A  + + M +   + CK     D+  Y     
Sbjct: 259 MVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQ---NGCKP----DVVTY----- 306

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            +   D    ++L+ ++ +  SE  ++ +   P+   YTT++ G    G++++ +R+   
Sbjct: 307 -NIIIDSLYKDRLVNDAADFLSE--MVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLF-- 361

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            ++ E     PD V Y T++ +L K   ++ A + L+EM   G+P N +TY+ +L G+C 
Sbjct: 362 -KKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             Q+D+A +L +EM     + P+ ++++IL+DG       + A   F  M  +G+ P   
Sbjct: 421 LGQLDEATQLFKEMV-GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIY 479

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y  LM  + L  +   A KVF E++       D+ ++N+L+ GYC    +++AK ++ +
Sbjct: 480 TYNALMNGYCLRCKMNEARKVF-EIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQ 538

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M      PN  TY ++  G+    +  +A  L+K++              S + P L   
Sbjct: 539 MSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM------------CSSGMLPTLMTY 586

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             LL+ L     +     +AL++   M+E  + P+   Y
Sbjct: 587 SILLNGLC----KHGHLDEALKLFKSMKEKKLEPDIILY 621



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 202/426 (47%), Gaps = 47/426 (11%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           + +P    +   L + A + +    + L +QM  FG    V + N++I    R +     
Sbjct: 88  NPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFA 147

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLE 171
           V V  ++ ++GI   + TF +L+      G +++A  +   M R G         E D+ 
Sbjct: 148 VSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG--------HEPDVI 199

Query: 172 DYSSE-----NEGDDDDDDEVFEKLLPNSINPSSE----------------------PPL 204
            Y++      N G+ +    VF+K+  N   P+                          +
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEM 259

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           + +   P++  Y +++ G    G++++  R+    +R E N   PD VTY  ++ +L K 
Sbjct: 260 VGRGIPPDAITYNSIVHGLCCLGQLNEATRLF---KRMEQNGCKPDVVTYNIIIDSLYKD 316

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
             ++ A   L+EM   G+P + +TY  +L G C   Q+++A  L ++M +    +PDVV+
Sbjct: 317 RLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM-EQKGCKPDVVA 375

Query: 325 YNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           YN +ID      L++D   A+ F +EM  RGI P  ++Y+T++  F    Q   A ++F 
Sbjct: 376 YNTIIDSLCKDRLVND---AMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFK 432

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           EM+    V  + + +++LV+G C+ G+V EA+ + E M E G  PN+ TY +L NG  L 
Sbjct: 433 EMV-GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLR 491

Query: 442 RKPGEA 447
            K  EA
Sbjct: 492 CKMNEA 497



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/517 (23%), Positives = 231/517 (44%), Gaps = 80/517 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVKRVRK--- 44
           M+RSG+ P V +++T+++ L  SG+             +G   +V  ++ ++  + K   
Sbjct: 189 MVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRL 248

Query: 45  ------FSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
                 F    +     PD   YN++++    LG+  +  +LF +M + G KPDV+TYN+
Sbjct: 249 VNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNI 308

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I    +    +     L  +++ GI   + T+ +++      G L  A  + + M +  
Sbjct: 309 IIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKG 368

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
              CK     D+  Y++        D    ++L+ +++   SE  ++ +   PN+  Y+T
Sbjct: 369 ---CKP----DVVAYNT------IIDSLCKDRLVNDAMEFLSE--MVDRGIPPNAVTYST 413

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++ G+ N G++ +  ++   M  +      P+ +T++ +V  L + G +  AR V   MT
Sbjct: 414 ILHGFCNLGQLDEATQLFKEMVGRN---VMPNTLTFSILVDGLCQEGMVSEARWVFETMT 470

Query: 279 RIGVPANRITYN-----------------------------------ILLKGYCQQLQID 303
             GV  N  TYN                                   IL+ GYC   ++D
Sbjct: 471 EKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMD 530

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           KAK LL +M+   K+ P+ V+YN ++ G   +     A   F +M + G+ PT ++Y+ L
Sbjct: 531 KAKALLTQMSVK-KLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSIL 589

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +           A K+F  M ++ +++ DI+ + +L+EG    G +E AK +  ++  +G
Sbjct: 590 LNGLCKHGHLDEALKLFKSM-KEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADG 648

Query: 424 FYPNVATYGSLANGI---SLARKPGEALLLWKEIKER 457
             P   TY  +  G+    L+ +  E    WK +K  
Sbjct: 649 IQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMKHN 685



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 137/276 (49%), Gaps = 24/276 (8%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            PD +T+TT+++ +   G +  A ++  EM R G   + I+YN L+ G C     + A  
Sbjct: 160 QPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVH 219

Query: 308 LLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           + ++M  +   +P+VV+YN +ID      L++D   A+ F +EM  RGI P  I+Y +++
Sbjct: 220 VFKKMEQNG-CKPNVVTYNTIIDSLCKDRLVND---AMDFLSEMVGRGIPPDAITYNSIV 275

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                  Q   A ++F  M ++   K D+V +N++++   +  LV +A   +  M + G 
Sbjct: 276 HGLCCLGQLNEATRLFKRMEQNG-CKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGI 334

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            P+V TY ++ +G+    +  EA+ L+K+++++                  KPD    + 
Sbjct: 335 PPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQK----------------GCKPDVVAYNT 378

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + D   +      A+E ++ M + GIPPN   Y  I
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTI 414


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 221/466 (47%), Gaps = 36/466 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD    +++LN   +  +  + + L DQM E G KPD +T+N +I      ++    V 
Sbjct: 148 EPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVA 207

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R++  G    + T+ ++V      GD+++A ++++ M +G+ +   +I    ++   
Sbjct: 208 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLC 267

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                DD  D  +F K+    I              P+   Y +L+    N GR SD  R
Sbjct: 268 KYKHMDDAFD--LFNKMETKGIK-------------PDVFTYNSLISCLCNYGRWSDASR 312

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT+ +++ A  K G +  A ++  EM +  +  N +TYN L+ 
Sbjct: 313 LLSDMIERKIN---PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLIN 369

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++D+A+++   M     + PDVV+YN LI GF         +  F EM  RG+ 
Sbjct: 370 GFCMHDRLDEAQQIFTLMVSKDCL-PDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 428

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++Y TL++    +    +A K+F +M+ D  V  DI+ +++L++G C+ G +E+A  
Sbjct: 429 GNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG-VPPDIITYSILLDGLCKYGKLEKALV 487

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           + E ++++   PN+ TY  +  G+  A K  +   L+      C +  +GV         
Sbjct: 488 VFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLF------CSLSLKGV--------- 532

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            KP+  +   +     R     +A  +   M+E G  P+   Y  +
Sbjct: 533 -KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTL 577



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 192/443 (43%), Gaps = 47/443 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +  + TVV+ L   GD          D+ +  ++K     I    + +   
Sbjct: 212 MVARGCQPDLFTYGTVVNGLCKRGD---------IDLALSLLKKMEKGKI----EANVVI 258

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++             LF++M   G KPDV TYN +I       R      +L  ++
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMI 318

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD--LEDYSSENE 178
           E  I   + TF SL+ A+   G L  AE +   M         I R +D  +  Y+S   
Sbjct: 319 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM---------IQRSIDPNIVTYNSLIN 369

Query: 179 G-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           G       D+  ++F               ++ K   P+   Y TL+KG+    RV + +
Sbjct: 370 GFCMHDRLDEAQQIF-------------TLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGM 416

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +    R         + VTY T++  L +AG  D A+++  +M   GVP + ITY+ILL
Sbjct: 417 ELF---REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 473

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  +++KA  ++ E    +K+EP++ +YNI+I+G             F  +  +G+
Sbjct: 474 DGLCKYGKLEKAL-VVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 532

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  I YTT++  F      + A+ +F EM  D  +  D   +N L+    R G    + 
Sbjct: 533 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP-DSGCYNTLIRARLRDGDKAASA 591

Query: 414 RIIERMKENGFYPNVATYGSLAN 436
            +I+ M+  GF  + +T   + N
Sbjct: 592 ELIKEMRSCGFVGDASTISMVIN 614



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 180/405 (44%), Gaps = 61/405 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L+A A + K    + L +QM   G   +  TY++++    R S+  L + V
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAV 138

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  Y     +  A  +V  M E                   
Sbjct: 139 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVE------------------- 179

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P++  + TL+ G     + S+ V +
Sbjct: 180 -------------------------------MGYKPDTVTFNTLIHGLFLHNKASEAVAL 208

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M  +      PD  TY TVV+ L K G +D A  +L +M +  + AN + YN ++ G
Sbjct: 209 IDRMVAR---GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDG 265

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   +D A +L  +M +   I+PDV +YN LI         + A    ++M  R I P
Sbjct: 266 LCKYKHMDDAFDLFNKM-ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINP 324

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             +++ +L+ AFA   +   A K+FDEM++   DP    +IV +N L+ G+C    ++EA
Sbjct: 325 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP----NIVTYNSLINGFCMHDRLDEA 380

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++I   M      P+V TY +L  G   A++  E + L++E+ +R
Sbjct: 381 QQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQR 425



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
            +L++D A  L  EM   ++  P ++ ++ L+     ++     ++   +M+  GI    
Sbjct: 58  SELKLDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            +Y+ L+  F   SQ  LA  V  +M++   +P    DIV  + L+ GYC    + EA  
Sbjct: 117 YTYSILLNCFCRRSQLPLALAVLGKMMKLGYEP----DIVTLSSLLNGYCHGKRISEAVA 172

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++++M E G+ P+  T+ +L +G+ L  K  EA+ L   +  R
Sbjct: 173 LVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVAR 215


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 210/498 (42%), Gaps = 74/498 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y+ ++N     G  +    +  +M   G KP+ + Y  ++   A+  R      +
Sbjct: 414 PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 473

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LER+ E GI   +  + SL+  +     +E A T +  M E R           ++ YS 
Sbjct: 474 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 533

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G+ +  D  F ++L   +              PN  IYT L++G+  EG V++    
Sbjct: 534 A--GEMEIADRYFNEMLSCGV-------------LPNVGIYTALIEGHCKEGNVTEA--- 575

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         D  TY+ ++  L + G M  A  + +E+   G+  N  TYN L+ G
Sbjct: 576 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 635

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+Q  +DKA +LL EM     I PD+V+YNILIDG     +   A   F+++  RG+ P
Sbjct: 636 SCKQGNVDKASQLLEEMCIKG-INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 694

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEML-------------------RDPRVK------ 390
             ++Y  ++  +  S  P  A ++ +EML                   ++ + +      
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 754

Query: 391 --------VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
                      V++N L+EGYC+ G ++EA  ++E M E  F PN  TY SL +    A 
Sbjct: 755 QEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAG 814

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
             GEA  LW E++ER            ++ P  K    LL    +I           E+ 
Sbjct: 815 MMGEAKRLWLEMQER------------NVMPTAKTYTSLLHGYHNI-------GNMSEVS 855

Query: 503 ACMEE---HGIPPNKTKY 517
           A  EE    GI P+K  Y
Sbjct: 856 ALFEEMVAKGIEPDKMTY 873



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 193/405 (47%), Gaps = 38/405 (9%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +  P++  ++ ++++   +G   + + +F     F  +P +L+ N ++    + ++  L 
Sbjct: 149 NGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELF 208

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             V + +    +   + T+ ++++A+   G+++ A+ ++  M E  R +           
Sbjct: 209 WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLL----------- 257

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                       DE  E           +  ++ K   P+   Y  L+ G+  E R  + 
Sbjct: 258 ------------DEAIEL----------KRSMVDKGLVPDLYTYDILINGFCMEKRSREA 295

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             ML  M    D    P+ +TY  ++   ++ G +++A ++  EM   G+ AN I +N L
Sbjct: 296 KLMLLEMI---DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTL 352

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L G C+  +++KA E+++EM +   +EPD  +Y++LI+G     + A A    +EM+ R 
Sbjct: 353 LNGVCKAGKMEKALEIMQEMMEKG-VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 411

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +APT ++Y+ ++         +  N +  EM+ +  +K + V +  L+  + + G VEE+
Sbjct: 412 LAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG-LKPNAVVYTTLMTAHAKEGRVEES 470

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           + I+ERM+E G  P+V  Y SL  G   A++  EA     E+ ER
Sbjct: 471 RMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLER 515



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 208/472 (44%), Gaps = 49/472 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V  +S +++ L   G+      ++  + +++ +       +++  KP+   Y  ++ A
Sbjct: 414 PTVLTYSVIINGLCRCGN------LQGTNAILREM-------VMNGLKPNAVVYTTLMTA 460

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
            A  G+ ++   + ++M E G  PDV  YN +I    +A R       L  +LE  +   
Sbjct: 461 HAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPN 520

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN---EGDDDDD 184
             T+ + +  Y   G++EIA+     M       C ++  + +     E    EG+  + 
Sbjct: 521 AHTYGAFIDGYSKAGEMEIADRYFNEMLS-----CGVLPNVGIYTALIEGHCKEGNVTEA 575

Query: 185 DEVFEKLLPNSINPSSE----------------------PPLLPKTFAPNSRIYTTLMKG 222
             VF  +L   +    +                        L  K   PN+  Y +L+ G
Sbjct: 576 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 635

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              +G V    ++L  M  +  N   PD VTY  ++  L KAG ++RA+ +  ++   G+
Sbjct: 636 SCKQGNVDKASQLLEEMCIKGIN---PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 692

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N +TY  ++ GYC+      A +LL EM     + PD   YN++++     +    AL
Sbjct: 693 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG-VPPDAFIYNVILNFCCKEEKFEKAL 751

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F EM  +G A T +S+ TL++ +  S + + AN + +EM+    +  + V +  L++ 
Sbjct: 752 DLFQEMLEKGFAST-VSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIP-NHVTYTSLIDH 809

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            C+ G++ EAKR+   M+E    P   TY SL +G        E   L++E+
Sbjct: 810 NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 120/502 (23%), Positives = 211/502 (42%), Gaps = 64/502 (12%)

Query: 56  PDTAAYNAVLNACANLGKPK-----------------KFLQLFDQMHEFGAKPDVLTYNV 98
           PD   Y  +++A   +G  K                 + ++L   M + G  PD+ TY++
Sbjct: 222 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDI 281

Query: 99  MIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
           +I   C     +   + +LE I ++G+     T+ +L+  ++  GD+E A  I   M   
Sbjct: 282 LINGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVAC 340

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL------------ 205
             +   II    L        G  +   E+ ++++   + P S+   L            
Sbjct: 341 GIEANLIIWNTLLNGVCK--AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMA 398

Query: 206 ----------PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                      +  AP    Y+ ++ G    G +  T  +L   R    N   P+ V YT
Sbjct: 399 RAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAIL---REMVMNGLKPNAVVYT 455

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           T+++A  K G ++ +R +L  M   G+  +   YN L+ G+C+  ++++A+  L EM  +
Sbjct: 456 TLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEML-E 514

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
            ++ P+  +Y   IDG+    +   A  +FNEM + G+ P    YT L++          
Sbjct: 515 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 574

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A  VF  +L   RV  D+  +++L+ G  R G + EA  I   ++E G  PN  TY SL 
Sbjct: 575 AFSVFRFIL-SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 633

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           +G   + K G      + ++E C    +G+N          PD    + L D   +A   
Sbjct: 634 SG---SCKQGNVDKASQLLEEMC---IKGIN----------PDIVTYNILIDGLCKAGEI 677

Query: 496 RKALEIVACMEEHGIPPNKTKY 517
            +A  +   +E  G+ PN   Y
Sbjct: 678 ERAKNLFDDIEGRGLTPNCVTY 699



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/461 (21%), Positives = 188/461 (40%), Gaps = 76/461 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR-----VRKFS--------- 46
           ML  G LP+V  ++ ++      G+    E+  +F  ++ R     V+ +S         
Sbjct: 547 MLSCGVLPNVGIYTALIEGHCKEGN--VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRN 604

Query: 47  -----DPDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
                   I S+ +     P+   YN++++     G   K  QL ++M   G  PD++TY
Sbjct: 605 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 664

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           N++I    +A        + + I   G+T    T+ ++V  Y    +   A  +++ M  
Sbjct: 665 NILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM-- 722

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
                  ++R +  + +      +    +E FEK L           +L K FA     +
Sbjct: 723 -------LLRGVPPDAFIYNVILNFCCKEEKFEKAL------DLFQEMLEKGFASTVS-F 768

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            TL++GY   G++ +   +L  M  ++     P+HVTYT+++    KAG M  A+++  E
Sbjct: 769 NTLIEGYCKSGKLQEANHLLEEMIEKQ---FIPNHVTYTSLIDHNCKAGMMGEAKRLWLE 825

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M    V     TY  LL GY     + +   L  EM     IEPD ++Y ++ID +    
Sbjct: 826 MQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG-IEPDKMTYYVMIDAYCREG 884

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   A    +E+  +G+ P K  +                             ++ +   
Sbjct: 885 NVMEACKLKDEILVKGM-PMKSGF-----------------------------RLGLPTC 914

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +++  G+   G ++EA  ++  M + G+  N  + G L +G
Sbjct: 915 SVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 955



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 139/355 (39%), Gaps = 75/355 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVK-LFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M   G  P +  ++ ++  L  +G+   +E  K LFD +  R              P+  
Sbjct: 652 MCIKGINPDIVTYNILIDGLCKAGE---IERAKNLFDDIEGR-----------GLTPNCV 697

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y A+++       P    QL ++M   G  PD   YNV++  C +  +    + + + +
Sbjct: 698 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM 757

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           LE G      +F +L+  Y   G L+ A  +++ M E ++ +   +    L D++ +  G
Sbjct: 758 LEKGFA-STVSFNTLIEGYCKSGKLQEANHLLEEMIE-KQFIPNHVTYTSLIDHNCK-AG 814

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              +   ++ ++   ++ P++             + YT+L+ GY N G +S+   +   M
Sbjct: 815 MMGEAKRLWLEMQERNVMPTA-------------KTYTSLLHGYHNIGNMSEVSALFEEM 861

Query: 240 RRQEDNASHPDHVTYTTVVSA-----------------LVK------------------- 263
             +      PD +TY  ++ A                 LVK                   
Sbjct: 862 VAK---GIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIA 918

Query: 264 -----AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
                AG+MD A +VL  M + G  +N  +   L+ G       + +  LL++MA
Sbjct: 919 RGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 973



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 119/274 (43%), Gaps = 45/274 (16%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+ V +++L+D +  +     A+  F   +     P+ +S  +L+      ++ +L  KV
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE-----------------N 422
           FD M    +V  D+  +  ++  +C++G V++AKR++  M E                  
Sbjct: 212 FDGMCAH-KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDK 270

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE---------GVNADSDLPP 473
           G  P++ TY  L NG  + ++  EA L+  E+ +   +K E         G     D+  
Sbjct: 271 GLVPDLYTYDILINGFCMEKRSREAKLMLLEMID-VGLKPEPITYNALIDGFMRQGDIEQ 329

Query: 474 PLKPDEELL-----------DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
             +  +E++           + L +   +A    KALEI+  M E G+ P+   Y  + +
Sbjct: 330 AFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTY-SLLI 388

Query: 523 EMHSRMFTSKHASQARQ--DRRRERKRAAEAFKF 554
           E H R    ++ ++A +  D  ++RK A     +
Sbjct: 389 EGHCR---GQNMARAFELLDEMKKRKLAPTVLTY 419


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 210/498 (42%), Gaps = 74/498 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y+ ++N     G  +    +  +M   G KP+ + Y  ++   A+  R      +
Sbjct: 423 PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 482

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LER+ E GI   +  + SL+  +     +E A T +  M E R           ++ YS 
Sbjct: 483 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 542

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G+ +  D  F ++L   +              PN  IYT L++G+  EG V++    
Sbjct: 543 A--GEMEIADRYFNEMLSCGV-------------LPNVGIYTALIEGHCKEGNVTEA--- 584

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         D  TY+ ++  L + G M  A  + +E+   G+  N  TYN L+ G
Sbjct: 585 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 644

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+Q  +DKA +LL EM     I PD+V+YNILIDG     +   A   F+++  RG+ P
Sbjct: 645 SCKQGNVDKASQLLEEMCIKG-INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 703

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEML-------------------RDPRVK------ 390
             ++Y  ++  +  S  P  A ++ +EML                   ++ + +      
Sbjct: 704 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 763

Query: 391 --------VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
                      V++N L+EGYC+ G ++EA  ++E M E  F PN  TY SL +    A 
Sbjct: 764 QEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAG 823

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
             GEA  LW E++ER            ++ P  K    LL    +I           E+ 
Sbjct: 824 MMGEAKRLWLEMQER------------NVMPTAKTYTSLLHGYHNI-------GNMSEVS 864

Query: 503 ACMEE---HGIPPNKTKY 517
           A  EE    GI P+K  Y
Sbjct: 865 ALFEEMVAKGIEPDKMTY 882



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/534 (21%), Positives = 222/534 (41%), Gaps = 52/534 (9%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           +++  +  D  +    + +   +N +LN     GK +K L++  +M E G +PD  TY++
Sbjct: 336 IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSL 395

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I+   R         +L+ + +  +   + T+  ++      G+L+    I++ M    
Sbjct: 396 LIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG 455

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                ++    +  ++ E  G  ++   + E++         E  +LP  F  NS I   
Sbjct: 456 LKPNAVVYTTLMTAHAKE--GRVEESRMILERM--------REQGILPDVFCYNSLIIGF 505

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
                M E R   T  M    RR   NA      TY   +    KAG M+ A +   EM 
Sbjct: 506 CKAKRMEEAR---TYLMEMLERRLRPNAH-----TYGAFIDGYSKAGEMEIADRYFNEML 557

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             GV  N   Y  L++G+C++  + +A  + R +    ++  DV +Y++LI G       
Sbjct: 558 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR-RVLQDVQTYSVLIHGLSRNGKM 616

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A   F+E++ +G+ P   +Y +L+           A+++ +EM     +  DIV +N+
Sbjct: 617 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKG-INPDIVTYNI 675

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           L++G C+ G +E AK + + ++  G  PN  TY ++ +G   ++ P  A  L +E+  R 
Sbjct: 676 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR- 734

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT--- 515
                           + PD  + + + + C +   F KAL++   M E G     +   
Sbjct: 735 ---------------GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNT 779

Query: 516 ------------KYKKIYVEMHSRMFTSKHAS-QARQDRRRERKRAAEAFKFWL 556
                       +   +  EM  + F   H +  +  D   +     EA + WL
Sbjct: 780 LIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWL 833



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 208/472 (44%), Gaps = 49/472 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V  +S +++ L   G+      ++  + +++ +       +++  KP+   Y  ++ A
Sbjct: 423 PTVLTYSVIINGLCRCGN------LQGTNAILREM-------VMNGLKPNAVVYTTLMTA 469

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
            A  G+ ++   + ++M E G  PDV  YN +I    +A R       L  +LE  +   
Sbjct: 470 HAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPN 529

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN---EGDDDDD 184
             T+ + +  Y   G++EIA+     M       C ++  + +     E    EG+  + 
Sbjct: 530 AHTYGAFIDGYSKAGEMEIADRYFNEMLS-----CGVLPNVGIYTALIEGHCKEGNVTEA 584

Query: 185 DEVFEKLLPNSINPSSE----------------------PPLLPKTFAPNSRIYTTLMKG 222
             VF  +L   +    +                        L  K   PN+  Y +L+ G
Sbjct: 585 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 644

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              +G V    ++L  M  +  N   PD VTY  ++  L KAG ++RA+ +  ++   G+
Sbjct: 645 SCKQGNVDKASQLLEEMCIKGIN---PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 701

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N +TY  ++ GYC+      A +LL EM     + PD   YN++++     +    AL
Sbjct: 702 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG-VPPDAFIYNVILNFCCKEEKFEKAL 760

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F EM  +G A T +S+ TL++ +  S + + AN + +EM+    +  + V +  L++ 
Sbjct: 761 DLFQEMLEKGFAST-VSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIP-NHVTYTSLIDH 818

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            C+ G++ EAKR+   M+E    P   TY SL +G        E   L++E+
Sbjct: 819 NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 870



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 189/432 (43%), Gaps = 56/432 (12%)

Query: 26  DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85
           D  ++S +    +V+ V  F  P    + +P   + N++L       K + F ++FD M 
Sbjct: 149 DMLMDSYRKMGFLVEAVNVFLGPKNF-EFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMC 207

Query: 86  EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
                PDV TY  MI    +         VL   LEMG   C     +LV   V  G L 
Sbjct: 208 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVL---LEMGEKGCSP---NLVTYNVIIGGLC 261

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            A  + +A+   R                                             ++
Sbjct: 262 RARLLDEAIELKR--------------------------------------------SMV 277

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            K   P+   Y  L+ G+  E R  +   ML  M    D    P+ +TY  ++   ++ G
Sbjct: 278 DKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMI---DVGLKPEPITYNALIDGFMRQG 334

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +++A ++  EM   G+ AN I +N LL G C+  +++KA E+++EM +   +EPD  +Y
Sbjct: 335 DIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG-VEPDSQTY 393

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           ++LI+G     + A A    +EM+ R +APT ++Y+ ++         +  N +  EM+ 
Sbjct: 394 SLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVM 453

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           +  +K + V +  L+  + + G VEE++ I+ERM+E G  P+V  Y SL  G   A++  
Sbjct: 454 NG-LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 512

Query: 446 EALLLWKEIKER 457
           EA     E+ ER
Sbjct: 513 EARTYLMEMLER 524



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 127/519 (24%), Positives = 222/519 (42%), Gaps = 53/519 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P++  ++ ++  L  +         +L D  ++  R   D  +V    PD   
Sbjct: 241 MGEKGCSPNLVTYNVIIGGLCRA---------RLLDEAIELKRSMVDKGLV----PDLYT 287

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++N      + ++   +  +M + G KP+ +TYN +I    R         + + ++
Sbjct: 288 YDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMV 347

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   +  + +L+      G +E A  I+Q M E  + V     E D + YS   EG 
Sbjct: 348 ACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMME--KGV-----EPDSQTYSLLIEGH 400

Query: 181 DDDDD--EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
               +    FE L            +  +  AP    Y+ ++ G    G +  T  +L  
Sbjct: 401 CRGQNMARAFELL----------DEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAIL-- 448

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            R    N   P+ V YTT+++A  K G ++ +R +L  M   G+  +   YN L+ G+C+
Sbjct: 449 -REMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCK 507

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++++A+  L EM  + ++ P+  +Y   IDG+    +   A  +FNEM + G+ P   
Sbjct: 508 AKRMEEARTYLMEML-ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVG 566

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            YT L++          A  VF  +L   RV  D+  +++L+ G  R G + EA  I   
Sbjct: 567 IYTALIEGHCKEGNVTEAFSVFRFIL-SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE 625

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           ++E G  PN  TY SL +G   + K G      + ++E C    +G+N          PD
Sbjct: 626 LQEKGLLPNAFTYNSLISG---SCKQGNVDKASQLLEEMC---IKGIN----------PD 669

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
               + L D   +A    +A  +   +E  G+ PN   Y
Sbjct: 670 IVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTY 708



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/461 (22%), Positives = 199/461 (43%), Gaps = 47/461 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR-----VRKFS--------- 46
           ML  G LP+V  ++ ++      G+    E+  +F  ++ R     V+ +S         
Sbjct: 556 MLSCGVLPNVGIYTALIEGHCKEGN--VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRN 613

Query: 47  -----DPDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
                   I S+ +     P+   YN++++     G   K  QL ++M   G  PD++TY
Sbjct: 614 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 673

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           N++I    +A        + + I   G+T    T+ ++V  Y    +   A  +++ M  
Sbjct: 674 NILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM-- 731

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
                  ++R +  + +      +    +E FEK L           +L K FA     +
Sbjct: 732 -------LLRGVPPDAFIYNVILNFCCKEEKFEKAL------DLFQEMLEKGFASTVS-F 777

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            TL++GY   G++ +   +L  M  ++     P+HVTYT+++    KAG M  A+++  E
Sbjct: 778 NTLIEGYCKSGKLQEANHLLEEMIEKQ---FIPNHVTYTSLIDHNCKAGMMGEAKRLWLE 834

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M    V     TY  LL GY     + +   L  EM     IEPD ++Y ++ID +    
Sbjct: 835 MQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG-IEPDKMTYYVMIDAYCREG 893

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   A    +E+  +G+  +  +Y  L++A     +     K+ +E + +   ++ +   
Sbjct: 894 NVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNE-IGESGFRLGLPTC 952

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +++  G+   G ++EA  ++  M + G+  N  + G L +G
Sbjct: 953 SVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 993



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+ V +++L+D +  +     A+  F   +     P+ +S  +L+      ++ +L  KV
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           FD M    +V  D+  +  ++  +C++G V++AKR++  M E G  PN+ TY  +  G+ 
Sbjct: 203 FDGMCAH-KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLC 261

Query: 440 LARKPGEALLLWKEIKER 457
            AR   EA+ L + + ++
Sbjct: 262 RARLLDEAIELKRSMVDK 279



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 28/280 (10%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD   YN +LN C    K +K L LF +M E G    V ++N +I+   ++ +      +
Sbjct: 738  PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHL 796

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            LE ++E        T+ SL+      G +  A+ +   M+E  R+V    +      +  
Sbjct: 797  LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQE--RNVMPTAKTYTSLLHGY 854

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSS----------------------EPPLLPKTFAPNS 213
             N G+  +   +FE+++   I P                        +  +L K    + 
Sbjct: 855  HNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSV 914

Query: 214  RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
              Y  L++    +    + +++L  +         P   T + +      AG+MD A +V
Sbjct: 915  AAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLP---TCSVIARGFQIAGNMDEAAEV 971

Query: 274  LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
            L  M + G  +N  +   L+ G       + +  LL++MA
Sbjct: 972  LRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 1011


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 213/442 (48%), Gaps = 67/442 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P   AYNAVL A ++   P    + FD M   G  P+V TYN++++ LC R  RK  L  
Sbjct: 121 PSVLAYNAVLLALSDASLPSA-RRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALS- 178

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL  +   G      T+ +LVAA+   G+++ AE +V  MREG         + +L  ++
Sbjct: 179 VLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGL-------KPNLVTFN 231

Query: 175 SE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           S        G  +D  +VF++++   +             AP+   Y TL+ GY   G  
Sbjct: 232 SVVNGICKAGRMEDARKVFDEMVKEGL-------------APDGVSYNTLVGGYCKVGCS 278

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            + + +   M R+      PD VT+T+++  + KAG+++RA  ++ EM   G+  N IT+
Sbjct: 279 HEALSVFAEMTRK---GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITF 335

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
             L+ G+C++  +D A   +REM    +I+P VV YN LI+G+ ++     A     EM 
Sbjct: 336 TALIDGFCKKGFLDDALLAVREM-RQCRIQPSVVCYNALINGYCMVGRMDEARELVREME 394

Query: 350 ARGIAPTKISYTTLMKAFALS---------SQPKLANKVF---------------DEMLR 385
           A+G+ P  ++Y+T++ A+  +         +Q  L N V                ++ L 
Sbjct: 395 AKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454

Query: 386 DPRV----------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           D  V          + D V +  L++G+C+ G VE A  + + M + G  P+V TY  L 
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLI 514

Query: 436 NGISLARKPGEAL-LLWKEIKE 456
           NG+S + +  EA  LL+K   E
Sbjct: 515 NGLSKSARTKEAQRLLFKLYHE 536



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 202/452 (44%), Gaps = 48/452 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+   ++T+V+    +G+             V R  +  D       KP+   
Sbjct: 183 MRGAGCDPNAVTYNTLVAAFCRAGE-------------VDRAERLVDMMREGGLKPNLVT 229

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N+V+N     G+ +   ++FD+M + G  PD ++YN ++    +    H  + V   + 
Sbjct: 230 FNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMT 289

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + TF SL+      G+LE A  +V+ MRE    + +I     ++ +    +G 
Sbjct: 290 RKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFC--KKGF 347

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD      ++    I PS                Y  L+ GY   GR+ D  R L  +R
Sbjct: 348 LDDALLAVREMRQCRIQPSVV-------------CYNALINGYCMVGRM-DEAREL--VR 391

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E     PD VTY+T++SA  K G    A Q+  +M   GV  + ITY+ L++  C++ 
Sbjct: 392 EMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEK 451

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++  A  L + M     ++PD V+Y  LIDG     +   AL+  +EM   G+ P  ++Y
Sbjct: 452 RLGDAHVLFKNMI-SLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTY 510

Query: 361 TTLMKAFALSS---------------QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
           + L+   + S+               +P  AN  +D ++R  R   ++ +   L++G+C 
Sbjct: 511 SVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCR-NAELKSVLALLKGFCM 569

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            GL+ EA ++ + + +  +  + + Y  L +G
Sbjct: 570 KGLMNEADKVYQSILDRNWNLDGSVYSVLIHG 601



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 156/317 (49%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L    APN   Y  L++     G   + + +L  MR        P+ VTY T+V+A  +
Sbjct: 148 MLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMR---GAGCDPNAVTYNTLVAAFCR 204

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +DRA +++  M   G+  N +T+N ++ G C+  +++ A+++  EM  +  + PD V
Sbjct: 205 AGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEG-LAPDGV 263

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           SYN L+ G+  +  S  AL+ F EM  +GI P  +++T+L+     +   + A  +  EM
Sbjct: 264 SYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREM 323

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R+  ++++ + +  L++G+C+ G +++A   +  M++    P+V  Y +L NG  +  +
Sbjct: 324 -RERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGR 382

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  L +E++ +      GV          KPD      +     +      A ++  
Sbjct: 383 MDEARELVREMEAK------GV----------KPDVVTYSTILSAYCKNGDTHSAFQLNQ 426

Query: 504 CMEEHGIPPNKTKYKKI 520
            M E+G+ P+   Y  +
Sbjct: 427 QMLENGVLPDAITYSSL 443



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 137/303 (45%), Gaps = 28/303 (9%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + Y  V+ AL  A S+  AR+    M   GV  N  TYNIL++  C +    +A  +
Sbjct: 121 PSVLAYNAVLLALSDA-SLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSV 179

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           LR+M   A  +P+ V+YN L+  F    +   A    + MR  G+ P  +++ +++    
Sbjct: 180 LRDM-RGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGIC 238

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + + + A KVFDEM+++  +  D V++N LV GYC++G   EA  +   M   G  P+V
Sbjct: 239 KAGRMEDARKVFDEMVKEG-LAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDV 297

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            T+ SL + +  A     A+ L +E++ER                 L+ +E    AL D 
Sbjct: 298 VTFTSLIHVMCKAGNLERAVGLVREMRER----------------GLQMNEITFTALIDG 341

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRA 548
             +  F   AL  V  M +  I P+   Y  +          + +    R D  RE  R 
Sbjct: 342 FCKKGFLDDALLAVREMRQCRIQPSVVCYNAL---------INGYCMVGRMDEARELVRE 392

Query: 549 AEA 551
            EA
Sbjct: 393 MEA 395


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 216/470 (45%), Gaps = 43/470 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQL-FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPDT  YN +LN   + G   K +++   +M  +G KPDV T+NV+IK   RA +    +
Sbjct: 151 KPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +LE +   G+     TF +++  Y+  GDL+ A  I + M E       +   + +  +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E   +D  +   F + + N              F P+   + TL+ G    G V   +
Sbjct: 270 CKEGRVEDALN---FIQEMSNQ-----------DGFFPDQYTFNTLVNGLCKAGHVKHAI 315

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ++  M ++      PD  TY +V+S L K G +  A +VL +M       N +TYN L+
Sbjct: 316 EIMDVMLQE---GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C++ Q+++A EL R +     I PDV ++N LI G  L  +   A+  F EMR++G 
Sbjct: 373 STLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRMGLVE 410
            P + +Y  L+   +L S+ KL   +   ML+   +      ++ +N L++G+C+     
Sbjct: 432 EPDEFTYNMLID--SLCSKGKLDEAL--NMLKQMELSGCARSVITYNTLIDGFCKANKTR 487

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           EA+ I + M+ +G   N  TY +L +G+  +R+  +A  L                 D  
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM----------------DQM 531

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +    KPD+   ++L     R    +KA +IV  M  +G  P+   Y  +
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 185/437 (42%), Gaps = 33/437 (7%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           + G+ P    ++T+V+ L  +G              VK   +  D  +     PD   YN
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGH-------------VKHAIEIMDVMLQEGYDPDVYTYN 334

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           +V++    LG+ K+ +++ DQM      P+ +TYN +I    + ++      +   +   
Sbjct: 335 SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 394

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           GI   + TF SL+       +  +A  + + MR    +  +    + ++   S+ + D+ 
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDE- 453

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                       ++N   +  L     A +   Y TL+ G+    +  +   +   M   
Sbjct: 454 ------------ALNMLKQMEL--SGCARSVITYNTLIDGFCKANKTREAEEIFDEM--- 496

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E +    + VTY T++  L K+  ++ A Q++ +M   G   ++ TYN LL  +C+   I
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            KA ++++ M  +   EPD+V+Y  LI G         A      ++ +GI  T  +Y  
Sbjct: 557 KKAADIVQAMTSNG-CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNP 615

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL-VEEAKRIIERMKE 421
           +++      +   A  +F EML       D V++ ++  G C  G  + EA   +  + E
Sbjct: 616 VIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE 675

Query: 422 NGFYPNVATYGSLANGI 438
            GF P  ++   LA G+
Sbjct: 676 KGFVPEFSSLYMLAEGL 692



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 178/426 (41%), Gaps = 71/426 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML+ GY P V  +++V+S L   G+    E+V++ D ++ R           D  P+T  
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGE--VKEAVEVLDQMITR-----------DCSPNTVT 367

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF-VLER 118
           YN +++      + ++  +L   +   G  PDV T+N +I+ LC   +R H +   + E 
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL--TRNHRVAMELFEE 425

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +   G      T+  L+ +    G L+ A  +++ M         I     ++ +   N+
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML-- 236
               + +E+F+++  + +             + NS  Y TL+ G     RV D  +++  
Sbjct: 486 --TREAEEIFDEMEVHGV-------------SRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530

Query: 237 -----------------------GAMRRQED-------NASHPDHVTYTTVVSALVKAGS 266
                                  G +++  D       N   PD VTY T++S L KAG 
Sbjct: 531 MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           ++ A ++L  +   G+      YN +++G  ++ +  +A  L REM +  +  PD VSY 
Sbjct: 591 VEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR 650

Query: 327 ILIDGFILIDDSAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           I+  G     +  G    A+ F  E+  +G  P   S   L +     S  +   K+ + 
Sbjct: 651 IVFRGLC---NGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNM 707

Query: 383 MLRDPR 388
           +++  R
Sbjct: 708 VMQKAR 713



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 140/341 (41%), Gaps = 67/341 (19%)

Query: 230 SDTVRMLGAMRRQEDNAS--------------HPDHVTYTTVVSALVKAGSMDRARQVLA 275
           S  V++L ++R Q D+++               P+   Y  ++  L ++GS D  +++L 
Sbjct: 48  STDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILE 107

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD-------------------- 315
           +M          T+ IL++ Y Q    D+   ++  M D+                    
Sbjct: 108 DMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDG 167

Query: 316 ----------AK-----IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
                     AK     I+PDV ++N+LI           A+    +M + G+ P + ++
Sbjct: 168 NSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTF 227

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM- 419
           TT+M+ +        A ++ ++M+ +       V+ N++V G+C+ G VE+A   I+ M 
Sbjct: 228 TTVMQGYIEEGDLDGALRIREQMV-EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMS 286

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
            ++GF+P+  T+ +L NG+  A            +K   E+       D  L     PD 
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKA----------GHVKHAIEI------MDVMLQEGYDPDV 330

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +++     +    ++A+E++  M      PN   Y  +
Sbjct: 331 YTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371


>gi|125572286|gb|EAZ13801.1| hypothetical protein OsJ_03724 [Oryza sativa Japonica Group]
          Length = 670

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 141/566 (24%), Positives = 251/566 (44%), Gaps = 80/566 (14%)

Query: 1   MLRSGY-LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           +LR G  LP    W + +  L  +     V  +K+FD   K++     P   +  +PD A
Sbjct: 175 LLRCGRRLPAFPVWGSPLIELTRADTGAFVAFLKVFDEACKQMVSEKSPSAAAAMRPDLA 234

Query: 60  AYNAVLNACANL-GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR---ASRKHLLVFV 115
           A NAVL  C  L G   +  ++ + M      PDV ++  +  L A     SR    V  
Sbjct: 235 ACNAVLGGCCRLLGSVTEAERVLEIMSAIAVSPDVDSFGCLAFLYAWRDIPSR----VDE 290

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+++L+         F++L++ Y+     E   +++  + E RR         DLE Y  
Sbjct: 291 LDKLLDALGFGKKIFFKNLISGYLKSCSFESVSSVILRVVEERR--VGGSNAFDLESY-- 346

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                                    T + + +++ GR+ +  ++
Sbjct: 347 -----------------------------------------TEVAQRFVDNGRIRELAQL 365

Query: 236 LGAMRRQED---NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +   +  E    + +  D V +  +V+A V+ G +++A  +L EMT  G       Y+ +
Sbjct: 366 IIKAQETESLQQSLAVEDSVGFG-IVNACVELGLLNKAHSILDEMTAQGASVGLGVYSSI 424

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           LK YC++ +  +A +L+ E++  A ++ D  SY+ LID  +   D   A + F EMR   
Sbjct: 425 LKAYCKEQRTAEAAQLVSEISA-AGLQLDAGSYDALIDASMTAHDFLSAFSLFKEMREAR 483

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +   + SY T+M     +++P+L     D ++ DPR+++    WN ++  +C++G +E+A
Sbjct: 484 LPDLRTSYLTIMTGLTENNRPELMASFLDTVVDDPRIEIATHDWNSIIHAFCKVGRLEDA 543

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           +R   RM    + PN  TY SL NG   A K    L+LW E++ +         AD    
Sbjct: 544 RRTYRRMVFLRYEPNNQTYLSLINGYVSAEKYFSVLILWTEVRRK--------GADF--- 592

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
                + EL+DA     V+  FF  A++++   +E  I  +K ++K+ ++E H ++  +K
Sbjct: 593 -----NHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWRHKQAFMETHKKLKVAK 647

Query: 533 HASQARQDRRRERKRAAEAFKFWLGL 558
                 + R   +  A  AFK W GL
Sbjct: 648 -----LRKRNFRKMEALIAFKNWAGL 668


>gi|115440409|ref|NP_001044484.1| Os01g0788900 [Oryza sativa Japonica Group]
 gi|20160827|dbj|BAB89767.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|20161191|dbj|BAB90118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534015|dbj|BAF06398.1| Os01g0788900 [Oryza sativa Japonica Group]
 gi|215740585|dbj|BAG97241.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 670

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 141/566 (24%), Positives = 251/566 (44%), Gaps = 80/566 (14%)

Query: 1   MLRSGY-LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           +LR G  LP    W + +  L  +     V  +K+FD   K++     P   +  +PD A
Sbjct: 175 LLRCGRRLPAFPVWGSPLIELTRADTGAFVAFLKVFDEACKQMVSEKSPSAAAAMRPDLA 234

Query: 60  AYNAVLNACANL-GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR---ASRKHLLVFV 115
           A NAVL  C  L G   +  ++ + M      PDV ++  +  L A     SR    V  
Sbjct: 235 ACNAVLGGCCRLLGSVTEAERVLEIMSAIAVSPDVDSFGCLAFLYAWRDIPSR----VDE 290

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+++L+         F++L++ Y+     E   +++  + E RR         DLE Y  
Sbjct: 291 LDKLLDALGFGKKIFFKNLISGYLKSCSFESVSSVILRVVEERR--VGGSNAFDLESY-- 346

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                                    T + + +++ GR+ +  ++
Sbjct: 347 -----------------------------------------TEVAQRFVDNGRIRELAQL 365

Query: 236 LGAMRRQED---NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +   +  E    + +  D V +  +V+A V+ G +++A  +L EMT  G       Y+ +
Sbjct: 366 IIKAQETESLQQSLAVEDSVGFG-IVNACVELGLLNKAHSILDEMTAQGASVGLGVYSSI 424

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           LK YC++ +  +A +L+ E++  A ++ D  SY+ LID  +   D   A + F EMR   
Sbjct: 425 LKAYCKEQRTAEAAQLVSEISA-AGLQLDAGSYDALIDASMTAHDFLSAFSLFKEMREAR 483

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +   + SY T+M     +++P+L     D ++ DPR+++    WN ++  +C++G +E+A
Sbjct: 484 LPDLRTSYLTIMTGLTENNRPELMASFLDTVVDDPRIEIATHDWNSIIHAFCKVGRLEDA 543

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           +R   RM    + PN  TY SL NG   A K    L+LW E++ +         AD    
Sbjct: 544 RRTYRRMVFLRYEPNNQTYLSLINGYVSAEKYFSVLILWTEVRRK--------GADF--- 592

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
                + EL+DA     V+  FF  A++++   +E  I  +K ++K+ ++E H ++  +K
Sbjct: 593 -----NHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWRHKQAFMETHKKLKVAK 647

Query: 533 HASQARQDRRRERKRAAEAFKFWLGL 558
                 + R   +  A  AFK W GL
Sbjct: 648 -----LRKRNFRKMEALIAFKNWAGL 668


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 216/483 (44%), Gaps = 44/483 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K D   YN +LN   +  K K    +  +M   G KPDV T+N++IK   RA +    + 
Sbjct: 173 KLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAIL 232

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++E +   G++    TF +L+  ++  G++  A  I + M         +   + +  Y 
Sbjct: 233 MMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYC 292

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            E            E++L      S+E       F P+   + +L+ G    G V   + 
Sbjct: 293 KEGR---------IEEVLSFIDEMSNE------GFRPDRFTFNSLVNGLCRIGHVKHALE 337

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M ++      PD  TY +++  L K G ++ A ++L +M       N +TYN L+ 
Sbjct: 338 ILDVMLQE---GFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLIS 394

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C++ Q+++A EL R +     I PDV ++N LI G  L ++   A+  F EM+ +G  
Sbjct: 395 TLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCH 453

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P + +Y  L+ +     + + A  +  EM        ++V +N L++G+C+   +EEA+ 
Sbjct: 454 PDEFTYNMLIDSLCSRGRLEEALSLLKEM-ESSGCSRNVVTYNTLIDGFCKNKRIEEAEE 512

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           I + M+  G   NV TY +L +G+   R+  EA  L                 D  L   
Sbjct: 513 IFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLM----------------DQMLMEG 556

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY--------VEMHS 526
           LKPD+   ++L     RA   +KA +IV  M  +G  P+   Y  +         VE+ S
Sbjct: 557 LKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELAS 616

Query: 527 RMF 529
           R+ 
Sbjct: 617 RLL 619



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 182/399 (45%), Gaps = 26/399 (6%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERIL 120
           N +++     G+ ++ L   D+M   G +PD  T+N ++  LC     KH L  +L+ +L
Sbjct: 285 NVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALE-ILDVML 343

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + T+ SL+      G++E              +  +I+ ++ L D+S      
Sbjct: 344 QEGFDPDIFTYNSLIFGLCKLGEVE--------------EAVEILNQMILRDFSPNTVTY 389

Query: 181 DDDDDEVFEKLLPNSINPSSEPP--LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           +     + ++   N +  ++E    L  K   P+   + +L++G          + +   
Sbjct: 390 NTLISTLCKE---NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEE 446

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M+ +     HPD  TY  ++ +L   G ++ A  +L EM   G   N +TYN L+ G+C+
Sbjct: 447 MKTK---GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCK 503

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             +I++A+E+  EM +   I  +VV+YN LIDG         A    ++M   G+ P K 
Sbjct: 504 NKRIEEAEEIFDEM-ELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKF 562

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y +L+  F  +   K A  +   M  +   + D V +  L+ G  + G VE A R++  
Sbjct: 563 TYNSLLTYFCRAGDIKKAADIVQTMTSNG-CEPDSVTYGTLILGLSKAGRVELASRLLRT 621

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++  G      TY  +   +   ++  EA+ L++E+ E+
Sbjct: 622 VQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEK 660



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 191/428 (44%), Gaps = 37/428 (8%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           ++ V  F D       +PD   +N+++N    +G  K  L++ D M + G  PD+ TYN 
Sbjct: 297 IEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNS 356

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG- 157
           +I    +       V +L +++    +    T+ +L++       +E A  + + +    
Sbjct: 357 LIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 416

Query: 158 -RRDVC---KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
              DVC    +I+ L L +       +     E+FE++     +P             + 
Sbjct: 417 ILPDVCTFNSLIQGLCLTN-------NHRLAMELFEEMKTKGCHP-------------DE 456

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  L+    + GR+ + + +L  M   E +    + VTY T++    K   ++ A ++
Sbjct: 457 FTYNMLIDSLCSRGRLEEALSLLKEM---ESSGCSRNVVTYNTLIDGFCKNKRIEEAEEI 513

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM   G+  N +TYN L+ G C+  ++++A +L+ +M  +  ++PD  +YN L+  F 
Sbjct: 514 FDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEG-LKPDKFTYNSLLTYFC 572

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
              D   A      M + G  P  ++Y TL+   + + + +LA++    +LR  ++K  +
Sbjct: 573 RAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR----LLRTVQLKGMV 628

Query: 394 VA---WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP-GEALL 449
           +A   +N +++   R     EA R+   M E G  P+  TY  +  G+     P GEA+ 
Sbjct: 629 LAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVD 688

Query: 450 LWKEIKER 457
              E+ ++
Sbjct: 689 FLVEMTDK 696



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 105/252 (41%), Gaps = 54/252 (21%)

Query: 238 AMRRQEDNAS--------------HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
           A+RRQ D  S               P  V Y  V+  L K GS    R+VL EM   G  
Sbjct: 78  ALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCE 137

Query: 284 ANRITYNILLKGYCQQLQIDKA--------------------KELLREMADDAK------ 317
             R T+ IL++ Y +    D+A                      LL  + D  K      
Sbjct: 138 IRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEI 197

Query: 318 ---------IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
                    I+PDV ++NILI           A+    EM + G++P + ++TTLM+ F 
Sbjct: 198 VNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFI 257

Query: 369 LSSQPKLANKVFDEMLRD--PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
                  A ++ ++M+    P   V +   N+LV GYC+ G +EE    I+ M   GF P
Sbjct: 258 EEGNMNGALRIREQMVAAGCPSSNVTV---NVLVHGYCKEGRIEEVLSFIDEMSNEGFRP 314

Query: 427 NVATYGSLANGI 438
           +  T+ SL NG+
Sbjct: 315 DRFTFNSLVNGL 326



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 125/299 (41%), Gaps = 27/299 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           PD   +N+++         +  ++LF++M   G  PD  TYN++I  LC+R   +  L  
Sbjct: 419 PDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALS- 477

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EG-RRDVCKIIRELD-LE 171
           +L+ +   G +  + T+ +L+  +     +E AE I   M  +G  R+V      +D L 
Sbjct: 478 LLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLC 537

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSS-----------------EPPLLPKTFAPNSR 214
                 E     D  + E L P+    +S                    +      P+S 
Sbjct: 538 KNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSV 597

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y TL+ G    GRV    R+L  ++ +      P   TY  V+ AL +      A ++ 
Sbjct: 598 TYGTLILGLSKAGRVELASRLLRTVQLK-GMVLAPQ--TYNPVIKALFREKRTSEAVRLF 654

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            EM   G P + +TY ++ +G C     I +A + L EM D   + PD  S+ +L +G 
Sbjct: 655 REMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFL-PDFSSFLMLAEGL 712



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 22/292 (7%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S    +   YN +++      + ++  ++FD+M   G   +V+TYN +I    +  R   
Sbjct: 485 SGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEE 544

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              +++++L  G+     T+ SL+  +   GD++ A  IVQ M     + C    E D  
Sbjct: 545 AAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTS---NGC----EPDSV 597

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y +   G            L  ++       L P+T+ P       ++K    E R S+
Sbjct: 598 TYGTLILGLSKAGRVELASRLLRTVQLKGMV-LAPQTYNP-------VIKALFREKRTSE 649

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS-MDRARQVLAEMTRIGVPANRITYN 290
            VR+   M  + D    PD VTY  V   L   G  +  A   L EMT  G   +  ++ 
Sbjct: 650 AVRLFREMMEKGD---PPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFL 706

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
           +L +G C     D   +L+  +   A      VS   +I GF+ I     AL
Sbjct: 707 MLAEGLCALSMEDTLIKLVNRVMKQANFSDSEVS---MIMGFLKIRKFQDAL 755


>gi|357140479|ref|XP_003571794.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 806

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 157/602 (26%), Positives = 271/602 (45%), Gaps = 67/602 (11%)

Query: 8   PHVKAWSTVVSRLAASGD------DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           P V AWS +++ +  + +      D  +E   LF       RK S+  ++S  KP++  +
Sbjct: 220 PPVAAWSGIIAHMCQTANGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLS-MKPNSFTF 278

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N VL A    G  KK  QL + M   G KPDV    VM ++  +   K  +V  L+R ++
Sbjct: 279 NIVLTASLLFGTTKKAEQLLELMPRIGVKPDVSLLIVMARIYEKNGHKDEIV-KLKRHVD 337

Query: 122 MGITLCMTTFQS----LVAAYVGFGDLEIA-ETIVQAMREGRR-----DVCKIIRE---- 167
               L    FQ     L++ ++ FGDL+ A + ++  +R+G+      +  K + E    
Sbjct: 338 EACGLSELEFQQFYDCLLSCHLKFGDLDSAVDMVLDMLRKGKNAKRSLEAAKAVLEAVES 397

Query: 168 ----LDLEDYSSENEGDDDDD---------------DEVFEKL------LPNSINPSSEP 202
               L  E    EN G  +                 D+ F +L      L N ++   + 
Sbjct: 398 SKIYLPFEKSDPENSGSPNKSVSANGQMRSYVSFFKDKSFARLELDARGLLNLLSDKLQD 457

Query: 203 PL-LPKT----FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
            + L K+      P   +Y  L+K ++   ++S     L     +ED+    +      V
Sbjct: 458 QVGLVKSEHGILHPTETMYAKLVKAFLEADKISALASFL-VKASKEDSPVSVESSFVVQV 516

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           ++A +  G +++A  +L EM   G+      Y+ LLK YC++   +     L + A  A 
Sbjct: 517 INACISVGLLEQAHDLLDEMRFSGIKVGSSIYSSLLKAYCKEGHHEDDITALLKDAQQAG 576

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I+ D   Y  LI   +   ++AGAL  F EMR   +  +      ++     +S+  L  
Sbjct: 577 IQLDSSCYEDLIQSRVHHKNTAGALHLFKEMRNSKVVKSGHREFEMLVQSCDNSEAALTT 636

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K+ +E+     V   I  WN ++  +C+  L+ +A + + +M+  G  PN  T+ SL   
Sbjct: 637 KLVEEVKSGHTVNHAIHDWNNVIHFFCKKRLMHDAHKALSKMRVLGHTPNAQTFHSLVTA 696

Query: 438 I-SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
             ++  K  E   LW E+K         V A+S+    +K D+ELLD+L    VR  FF 
Sbjct: 697 YAAIGGKYVEVTDLWGEMK---------VLANSN---SMKFDQELLDSLLYCFVRGGFFL 744

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWL 556
           +A+E++  ME+  +  +K KYK ++++ H  M+  K A + + + +  R+ AA  FK W+
Sbjct: 745 RAMEVIEMMEKCKMFIDKYKYKSLWLKYHRTMYKGK-APKVQTEAQLIRREAALQFKRWI 803

Query: 557 GL 558
           GL
Sbjct: 804 GL 805


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 216/470 (45%), Gaps = 43/470 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQL-FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPDT  YN +LN   + G   K +++   +M  +G KPDV T+NV+IK   RA +    +
Sbjct: 151 KPDTHFYNRMLNLLVD-GNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +LE +   G+     TF +++  Y+  GDL+ A  I + M E       +   + +  +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E   +D  +   F + + N              F P+   + TL+ G    G V   +
Sbjct: 270 CKEGRVEDALN---FIQEMSNQ-----------DGFFPDQYTFNTLVNGLCKAGHVKHAI 315

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ++  M ++      PD  TY +V+S L K G +  A + L +M       N +TYN L+
Sbjct: 316 EIMDVMLQE---GYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLI 372

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C++ Q+++A EL R +     I PDV ++N LI G  L  +   A+  F EMR++G 
Sbjct: 373 STLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRMGLVE 410
            P + +Y  L+   +L S+ KL   +   ML+   +      ++ +N L++G+C+   + 
Sbjct: 432 EPDEFTYNMLID--SLCSKGKLDEAL--NMLKQMELSGCARSVITYNTLIDGFCKANKIR 487

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           EA+ I + M+ +G   N  TY +L +G+  +R+  +A  L                 D  
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLM----------------DQM 531

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +    KPD+   ++L     R    +KA +IV  M  +G  P+   Y  +
Sbjct: 532 IMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 186/437 (42%), Gaps = 33/437 (7%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           + G+ P    ++T+V+ L  +G              VK   +  D  +     PD   YN
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGH-------------VKHAIEIMDVMLQEGYDPDVYTYN 334

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           +V++    LG+ K+ ++  DQM      P+ +TYN +I    + ++      +   +   
Sbjct: 335 SVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 394

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           GI   + TF SL+       +  +A  + + MR    +  +    + ++   S+ + D+ 
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDE- 453

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                       ++N   +  L     A +   Y TL+ G+    ++ +   +   M   
Sbjct: 454 ------------ALNMLKQMEL--SGCARSVITYNTLIDGFCKANKIREAEEIFDEM--- 496

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E +    + VTY T++  L K+  ++ A Q++ +M   G   ++ TYN LL  +C+   I
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDI 556

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            KA ++++ M  +   EPD+V+Y  LI G         A      ++ +GIA T  +Y  
Sbjct: 557 KKAADIVQAMTSNG-CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNP 615

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL-VEEAKRIIERMKE 421
           +++      +   A  +F EML       D V++ ++  G C  G  + EA   +  + E
Sbjct: 616 VIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE 675

Query: 422 NGFYPNVATYGSLANGI 438
            GF P  ++   LA G+
Sbjct: 676 KGFVPEFSSLYMLAEGL 692



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 172/414 (41%), Gaps = 47/414 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML+ GY P V  +++V+S L   G+             VK   +F D  I  D  P+T  
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGE-------------VKEAVEFLDQMITRDCSPNTVT 367

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF-VLER 118
           YN +++      + ++  +L   +   G  PDV T+N +I+ LC   +R H +   + E 
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL--TRNHRVAMELFEE 425

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDV----------CKIIR 166
           +   G      T+  L+ +    G L+ A  +++ M      R V          CK  +
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTT 218
             + E+   E E      + V    L + +  S            ++ +   P+   Y +
Sbjct: 486 IREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNS 545

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+  +   G +     ++ AM     N   PD VTY T++S L KAG ++ A ++L  + 
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMT---SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+      YN +++G  ++ +  +A  L REM +  +  PD VSY I+  G     + 
Sbjct: 603 MKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLC---NG 659

Query: 339 AG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
            G    A+ F  E+  +G  P   S   L +     S  +   K+ + +++  R
Sbjct: 660 GGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKAR 713



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 51/262 (19%)

Query: 230 SDTVRMLGAMRRQEDNAS--------------HPDHVTYTTVVSALVKAGSMDRARQVLA 275
           S  V++L ++R Q D+++               P+   Y  ++  L ++GS D  R++L 
Sbjct: 48  SSDVKLLDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILE 107

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK------------------ 317
           +M   G       + IL++ Y Q    D+   ++  M DD                    
Sbjct: 108 DMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDG 167

Query: 318 -----------------IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
                            I+PDV ++N+LI           A+    +M + G+ P + ++
Sbjct: 168 NNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTF 227

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM- 419
           TT+M+ +        A ++ ++M+ +       V+ N++V G+C+ G VE+A   I+ M 
Sbjct: 228 TTIMQGYIEEGDLDGALRIREQMV-EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMS 286

Query: 420 KENGFYPNVATYGSLANGISLA 441
            ++GF+P+  T+ +L NG+  A
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKA 308


>gi|30697827|ref|NP_177089.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806277|sp|P0C7R4.1|PP110_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g69290
 gi|332196785|gb|AEE34906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/508 (25%), Positives = 223/508 (43%), Gaps = 67/508 (13%)

Query: 55  KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A NA L AC   +        + + M   G KPD L++  +  L AR   +   +
Sbjct: 212 KPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAYLYARKGLREK-I 270

Query: 114 FVLERILE-MGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLE 171
             LE +++  G       + ++++ YV  GDL+ +++ I+ +++EG  +           
Sbjct: 271 SELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGGEE----------S 320

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            +S E                                       Y  L+KG++    V  
Sbjct: 321 SFSVET--------------------------------------YCELVKGFIESKSVKS 342

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI-TYN 290
             +++   ++ E +    D      +++A V  G  D+A  +L EM   G  +  I  Y 
Sbjct: 343 LAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEMIAQGGGSVGIGVYV 402

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            +LK YC++ +  +A +L+ E++    ++ DV   N LI+  +   D   A T F +MR 
Sbjct: 403 PILKAYCKEYRTAEATQLVTEISSSG-LQLDVEISNALIEASMTNQDFISAFTLFRDMRE 461

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             +   K SY T+M     + +P+L     DE++ DPRV+V+   WN ++  +C+ G +E
Sbjct: 462 NRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWNSIIHAFCKSGRLE 521

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A+R   RM    + PN  TY SL NG     K    LLLW EIK        G  +  +
Sbjct: 522 DARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIK--------GKISSVE 573

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
                + D  L+DA     V+  FF  A+++V   +E  I  +K +YK+ ++E H ++  
Sbjct: 574 AEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKLRL 633

Query: 531 SKHASQARQDRRRERKRAAEAFKFWLGL 558
            K      + R  ++  +  AFK W GL
Sbjct: 634 PK-----LRKRNYKKMESLVAFKNWAGL 656


>gi|357487751|ref|XP_003614163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515498|gb|AES97121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 660

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/505 (25%), Positives = 224/505 (44%), Gaps = 61/505 (12%)

Query: 56  PDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           PD A+ NA L AC   L       ++ + M + G KPDV ++  +  L A    +     
Sbjct: 213 PDVASCNAALEACCFCLQSVTDANRVVEIMSKLGVKPDVFSFGFLAYLYALKGLQ----- 267

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             ++I E+ + +            VGFG  +  +     +  G      ++    +E   
Sbjct: 268 --DKIDELKVLM------------VGFGYSKNNKCFYSNLISGYVKSANLV---SVESTI 310

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             +  D DD+ EV+                     + +   +  ++K Y+++G +     
Sbjct: 311 LSSLNDRDDEGEVW---------------------SFDRDTFCLVVKEYLHKGNIKGLAN 349

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++   ++ E +    D      +V+A V  G  D+A  +L EM  +G       Y  +LK
Sbjct: 350 LIIEAQKLESSNIKVDESIGFGIVNACVSIGLSDKAHSILDEMNALGGSVGLGVYVPILK 409

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            YC++ +  +A  L+ E++    ++ DV +Y+ LI+  +   D     + F +MR   + 
Sbjct: 410 AYCKENRTAEASLLVTEISSSG-LKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARVL 468

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
             K SY T+M     + +P+L     DE++ DPR++V    WN ++  +C+ G +E+A+R
Sbjct: 469 DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARR 528

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
              RM    F PN  TY SL NG   A K  + ++LW E+K +            D P  
Sbjct: 529 TFRRMTFLQFEPNDQTYLSLINGYVSAEKYFDVMMLWNEVKRKLA---------GDGPKG 579

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           +K D+ L+DA     V+  FF   +++V   +E  I  +K +YK+ ++E H ++      
Sbjct: 580 IKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSKEMKIFVDKWRYKQAFMETHKKL------ 633

Query: 535 SQARQDRRRERK-RAAEAFKFWLGL 558
             AR  ++  RK  A  AFK W GL
Sbjct: 634 KVARLRKKNVRKMEALIAFKNWAGL 658



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 114/312 (36%), Gaps = 69/312 (22%)

Query: 2   LRSGYLPH---VKAWSTVVSRLAASGDDGPVESVK--LFDVVVK------RVRKFSDPDI 50
           L SGY+     V   ST++S L    D+G V S     F +VVK       ++  ++  I
Sbjct: 293 LISGYVKSANLVSVESTILSSLNDRDDEGEVWSFDRDTFCLVVKEYLHKGNIKGLANLII 352

Query: 51  ------VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
                  S+ K D +    ++NAC ++G   K   + D+M+  G    +  Y  ++K   
Sbjct: 353 EAQKLESSNIKVDESIGFGIVNACVSIGLSDKAHSILDEMNALGGSVGLGVYVPILKAYC 412

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
           + +R      ++  I   G+ L + T+ +L+   +   D +   ++ + MR  R      
Sbjct: 413 KENRTAEASLLVTEISSSGLKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARV----- 467

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
              LDL+                                            Y T+M G M
Sbjct: 468 ---LDLKGS------------------------------------------YLTIMTGLM 482

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
              R       L  +   ED         + +++ A  KAG ++ AR+    MT +    
Sbjct: 483 ENHRPELMAAFLDEV--VEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEP 540

Query: 285 NRITYNILLKGY 296
           N  TY  L+ GY
Sbjct: 541 NDQTYLSLINGY 552


>gi|357487645|ref|XP_003614110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515445|gb|AES97068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 664

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/505 (25%), Positives = 225/505 (44%), Gaps = 61/505 (12%)

Query: 56  PDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           PD A+ NA L AC   L       ++ + M + G KPDV ++  +  L A    +     
Sbjct: 217 PDVASCNAALEACCFCLQSVTDANRVVEIMSKLGVKPDVFSFGFLAYLYALKGLQ----- 271

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             ++I E+ + +            VGFG  +  +     +  G      ++  ++    S
Sbjct: 272 --DKIDELKVLM------------VGFGYSKNNKCFYSNLISGYVKSANLV-SVESTILS 316

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S N+ DD+ +   F++                         +  ++K Y+++G +     
Sbjct: 317 SLNDRDDEGEVWSFDR-----------------------DTFCLVVKEYLHKGNIKGLAN 353

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++   ++ E +    D      +V+A V  G  D+A  +L EM  +G       Y  +LK
Sbjct: 354 LIIEAQKLESSNIKVDESIGFGIVNACVSIGLSDKAHNILDEMNALGGSVGLGVYVPILK 413

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            YC++ +  +A  L+ E++    ++ DV +Y+ LI+  +   D     + F +MR   + 
Sbjct: 414 AYCKENRTAEASLLVTEISSSG-LKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARVL 472

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
             K SY T+M     + +P+L     DE++ DPR++V    WN ++  +C+ G +E+A+R
Sbjct: 473 DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARR 532

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
              RM    F PN  TY SL NG   A K  + ++LW E+K +            D P  
Sbjct: 533 TFRRMTFLQFEPNDQTYLSLINGYVSAEKYFDVMMLWNEVKRKLA---------GDGPKG 583

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           +K D+ L+DA     V+  FF   +++V   +E  I  +K +YK+ ++E H ++      
Sbjct: 584 IKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSKEMKIFVDKWRYKQAFMETHKKL------ 637

Query: 535 SQARQDRRRERK-RAAEAFKFWLGL 558
             AR  ++  RK  A  AFK W GL
Sbjct: 638 KVARLRKKNVRKMEALIAFKNWAGL 662



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 114/312 (36%), Gaps = 69/312 (22%)

Query: 2   LRSGYLPH---VKAWSTVVSRLAASGDDGPVESVK--LFDVVVK------RVRKFSDPDI 50
           L SGY+     V   ST++S L    D+G V S     F +VVK       ++  ++  I
Sbjct: 297 LISGYVKSANLVSVESTILSSLNDRDDEGEVWSFDRDTFCLVVKEYLHKGNIKGLANLII 356

Query: 51  ------VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
                  S+ K D +    ++NAC ++G   K   + D+M+  G    +  Y  ++K   
Sbjct: 357 EAQKLESSNIKVDESIGFGIVNACVSIGLSDKAHNILDEMNALGGSVGLGVYVPILKAYC 416

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
           + +R      ++  I   G+ L + T+ +L+   +   D +   ++ + MR  R      
Sbjct: 417 KENRTAEASLLVTEISSSGLKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARV----- 471

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
              LDL+                                            Y T+M G M
Sbjct: 472 ---LDLKGS------------------------------------------YLTIMTGLM 486

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
              R       L  +   ED         + +++ A  KAG ++ AR+    MT +    
Sbjct: 487 ENHRPELMAAFLDEV--VEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEP 544

Query: 285 NRITYNILLKGY 296
           N  TY  L+ GY
Sbjct: 545 NDQTYLSLINGY 556


>gi|12325092|gb|AAG52501.1|AC018364_19 unknown protein; 45065-49536 [Arabidopsis thaliana]
          Length = 860

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/508 (26%), Positives = 224/508 (44%), Gaps = 67/508 (13%)

Query: 55  KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A NA L AC   +        + + M   G KPD L++  +  L AR   +   +
Sbjct: 414 KPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAYLYARKGLREK-I 472

Query: 114 FVLERILE-MGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLE 171
             LE +++  G       + ++++ YV  GDL+ +++ I+ +++EG  +           
Sbjct: 473 SELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGGEE----------S 522

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            +S E                                       Y  L+KG++    V  
Sbjct: 523 SFSVET--------------------------------------YCELVKGFIESKSVKS 544

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI-TYN 290
             +++   ++ E +    D      +++A V  G  D+A  +L EM   G  +  I  Y 
Sbjct: 545 LAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEMIAQGGGSVGIGVYV 604

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            +LK YC++ +  +A +L+ E++    ++ DV   N LI+  +   D   A T F +MR 
Sbjct: 605 PILKAYCKEYRTAEATQLVTEISSSG-LQLDVEISNALIEASMTNQDFISAFTLFRDMRE 663

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             +   K SY T+M     + +P+L     DE++ DPRV+V+   WN ++  +C+ G +E
Sbjct: 664 NRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWNSIIHAFCKSGRLE 723

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A+R   RM    + PN  TY SL NG     K    LLLW EIK     K   V A+  
Sbjct: 724 DARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIKG----KISSVEAEKR 779

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
                + D  L+DA     V+  FF  A+++V   +E  I  +K +YK+ ++E H ++  
Sbjct: 780 ----SRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKLRL 835

Query: 531 SKHASQARQDRRRERKRAAEAFKFWLGL 558
            K      + R  ++  +  AFK W GL
Sbjct: 836 PK-----LRKRNYKKMESLVAFKNWAGL 858


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 212/441 (48%), Gaps = 46/441 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L  G L  V + +  ++RL+ S D G   + ++F       R++S+  +  +    T +
Sbjct: 207 LLNYGVLVSVDSCNLFLARLSNSFD-GIRTAFRVF-------REYSEVGVCWN----TVS 254

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+    LGK K+   L  QM   G  PDV++Y+V++    +  +   ++ ++E + 
Sbjct: 255 YNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQ 314

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     T+ S+++     G +  AE +++ M+  R                      
Sbjct: 315 RKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR---------------------- 352

Query: 181 DDDDDEVFEKLLPN---SINPSSEPPLLP----KTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              D+ V+  L+     S N S E  L      K   P+   YT+++ G    G+V +  
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEAR 412

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           ++   M  +      PD VTYT ++    KAG M  A  +  +M   G+  N +TY  L+
Sbjct: 413 KLFSEMLSK---GLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALV 469

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++D A ELL EM++   ++P+V +YN LI+G   + +   A+    EM   G 
Sbjct: 470 DGLCKCGEVDIANELLHEMSEKG-LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF 528

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  I+YTT+M A+    +   A+++   ML D  ++  IV +N+L+ G+C  G++E+ +
Sbjct: 529 FPDTITYTTIMDAYCKMGEMAKAHELLRIML-DKGLQPTIVTFNVLMNGFCMSGMLEDGE 587

Query: 414 RIIERMKENGFYPNVATYGSL 434
           R+I+ M + G  PN  T+ SL
Sbjct: 588 RLIKWMLDKGIMPNATTFNSL 608



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/456 (23%), Positives = 190/456 (41%), Gaps = 68/456 (14%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
            P    ++T++S    SG+   VE  KLFD + ++        IV    PD   Y ++++
Sbjct: 354 FPDNVVYTTLISGFGKSGNVS-VE-YKLFDEMKRK-------KIV----PDFVTYTSMIH 400

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                GK  +  +LF +M   G KPD +TY  +I    +A        +  +++E G+T 
Sbjct: 401 GLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTP 460

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+ +LV      G+++IA  ++  M E                              
Sbjct: 461 NVVTYTALVDGLCKCGEVDIANELLHEMSE------------------------------ 490

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
                               K   PN   Y  L+ G    G +   V++   M   +   
Sbjct: 491 --------------------KGLQPNVCTYNALINGLCKVGNIEQAVKL---MEEMDLAG 527

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             PD +TYTT++ A  K G M +A ++L  M   G+    +T+N+L+ G+C    ++  +
Sbjct: 528 FFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGE 587

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            L++ M D   I P+  ++N L+  + + ++    +  +  M A+G+ P   +Y  L+K 
Sbjct: 588 RLIKWMLDKG-IMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKG 646

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
              +   K A  +  EM+ +    +   ++N L++G+ +    EEA+++ E M+ +GF  
Sbjct: 647 HCKARNMKEAWFLHKEMV-EKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIA 705

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
               Y    +           L L  E  E+C VKK
Sbjct: 706 EKEIYDIFVDVNYEEGNWENTLELCDEAIEKCLVKK 741



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 18/248 (7%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V  E + +GV  N ++YNI+L   CQ  ++ +A  LL +M     + PDVVSY++++
Sbjct: 236 AFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNV-PDVVSYSVIV 294

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DG+  ++     L    E++ +G+ P + +Y +++     + +   A +V   ++++ R+
Sbjct: 295 DGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVL-RVMKNQRI 353

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D V +  L+ G+ + G V    ++ + MK     P+  TY S+ +G+  A K  EA  
Sbjct: 354 FPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARK 413

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L+ E+                L   LKPDE    AL D   +A   ++A  +   M E G
Sbjct: 414 LFSEM----------------LSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKG 457

Query: 510 IPPNKTKY 517
           + PN   Y
Sbjct: 458 LTPNVVTY 465



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 100/222 (45%), Gaps = 24/222 (10%)

Query: 302 IDKAKELLREMADDAKIEPDV--VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            D+  E L     D    P V  V + +L++  +L++  AG L  F+++   G+  +  S
Sbjct: 163 FDRFTERLIYTYKDWGAHPLVFDVFFQVLVEAGLLLE--AGKL--FDKLLNYGVLVSVDS 218

Query: 360 YTTLMKAFALSSQP-KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
               +   + S    + A +VF E   +  V  + V++N+++   C++G V+EA  ++ +
Sbjct: 219 CNLFLARLSNSFDGIRTAFRVFRE-YSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQ 277

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M+  G  P+V +Y  + +G     + G+ L L +E++ +                 LKP+
Sbjct: 278 MEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRK----------------GLKPN 321

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +   +++     +     +A +++  M+   I P+   Y  +
Sbjct: 322 QYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTL 363


>gi|297841661|ref|XP_002888712.1| hypothetical protein ARALYDRAFT_339164 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334553|gb|EFH64971.1| hypothetical protein ARALYDRAFT_339164 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1042

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 221/505 (43%), Gaps = 67/505 (13%)

Query: 55  KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A NA L AC   L        + + M   G KPD L++  +  L AR   +   +
Sbjct: 212 KPDLVASNAALEACCRQLESLADADNVIESMAVLGVKPDELSFGFLAYLYARKGLREK-I 270

Query: 114 FVLERILE-MGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLE 171
             LE +++  G       + ++++ YV  GDL+ +++ I+ +++                
Sbjct: 271 SELENLMDGFGFASRRILYSNMISGYVKSGDLDNVSDVILHSLK---------------- 314

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                  GD                          K        Y  L+KG++    V  
Sbjct: 315 -------GDG-------------------------KESGFGEETYCELVKGFIESKSVKG 342

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI-TYN 290
             +++   ++ E ++   D      +++A V  G  D+A  +L EM   G  +  I  Y 
Sbjct: 343 LAKVIIEAQKLESSSIDADSSVGFGIINACVNLGFSDKAHSILEEMIAQGGGSVGIGAYV 402

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            +LK YC++ +  +A +L+ E+ + + ++ DV  YN LI+  +   D   A T F +MR 
Sbjct: 403 PILKAYCKEYRTAEATQLVTEI-NSSGLQLDVEIYNALIEASMTNQDFISAFTLFRDMRE 461

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             +   K SY T+M     + +P+L     DE++ DPRV+V+   WN ++  +C+ G +E
Sbjct: 462 TRVGDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWNSIIHAFCKSGRLE 521

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A+R   RM    + PN  TY SL NG     K    LLLW EIK        G  +  +
Sbjct: 522 DARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIK--------GKISSME 573

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
                K D  L+DA     V+  FF  A+++V   +E  I  +K +YK+ ++E H ++  
Sbjct: 574 AEKRSKLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKLRL 633

Query: 531 SKHASQARQDRRRERKRAAEAFKFW 555
            K      + R  ++  +  AFK W
Sbjct: 634 PK-----LRKRNYKKMESLVAFKNW 653


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 222/472 (47%), Gaps = 37/472 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P     N++LN   +  +  + + L DQM E G +PD +T+  ++    + ++    V +
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +ER++  G    + T+ +++      G+ ++A  ++  M +G+ +   +I    ++    
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK 252

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               DD             ++N  +E  +  K   P+   Y++L+    N GR SD  R+
Sbjct: 253 YRHVDD-------------ALNLFTE--MDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ N   P+ VT+ +++ A  K G +  A ++  EM +  +  N +TYN L+ G
Sbjct: 298 LSDMLERKIN---PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING 354

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   ++D+A+++   M     + PDVV+YN LI+GF         +  F +M  RG+  
Sbjct: 355 FCMHDRLDEAQQIFTLMVSKDCL-PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVG 413

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YTTL+  F  +S    A  VF +M+ D  V  +I+ +N L++G C+ G +E+A  +
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVV 472

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            E ++++   P++ TY  ++ G+  A K  +   L+      C +  +GV          
Sbjct: 473 FEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF------CSLSLKGV---------- 516

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           KPD    + +     +     +A  +   M+E G  P+   Y  + +  H R
Sbjct: 517 KPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTL-IRAHLR 567



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 202/434 (46%), Gaps = 33/434 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  GY P    ++T+V  L     +   E+V L    V+R+       +V   +PD   
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQH--NKASEAVAL----VERM-------VVKGCQPDLVT 207

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y AV+N     G+P   L L ++M +   + DV+ Y+ +I    +       + +   + 
Sbjct: 208 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMD 267

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+ SL++    +G    A  ++  M E R+    ++    L D +   EG 
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE-RKINPNVVTFNSLID-AFAKEGK 325

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++F++++  SI+             PN   Y +L+ G+    R+ +  ++   M 
Sbjct: 326 LIEAEKLFDEMIQRSID-------------PNIVTYNSLINGFCMHDRLDEAQQIFTLMV 372

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            ++     PD VTY T+++   KA  +    ++  +M+R G+  N +TY  L+ G+ Q  
Sbjct: 373 SKD---CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
             D A+ + ++M  D  + P++++YN L+DG         A+  F  ++   + P   +Y
Sbjct: 430 DCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTY 488

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             + +    + + +    +F   L    VK D++A+N ++ G+C+ GL EEA  +  +MK
Sbjct: 489 NIMSEGMCKAGKVEDGWDLFCS-LSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMK 547

Query: 421 ENGFYPNVATYGSL 434
           E+G  P+  TY +L
Sbjct: 548 EDGPLPDSGTYNTL 561



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 188/431 (43%), Gaps = 72/431 (16%)

Query: 30  ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
           E+V LF  +VK  R F  P IV  SK        +L+A A + K    +   ++M   G 
Sbjct: 48  EAVDLFGEMVKS-RPF--PSIVEFSK--------LLSAIAKMKKFDLVISFGEKMEILGV 96

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
             ++ TYN+MI    R S+    + +L +++++G    + T  SL+  +     +  A  
Sbjct: 97  SHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVA 156

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           +V  M E                                                    +
Sbjct: 157 LVDQMVE--------------------------------------------------MGY 166

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P++  +TTL+ G     + S+ V ++    R       PD VTY  V++ L K G  D 
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALV---ERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +L +M +  + A+ + Y+ ++   C+   +D A  L  EM D+  I PDV +Y+ LI
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-DNKGIRPDVFTYSSLI 282

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---D 386
                    + A    ++M  R I P  +++ +L+ AFA   +   A K+FDEM++   D
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
           P    +IV +N L+ G+C    ++EA++I   M      P+V TY +L NG   A+K  +
Sbjct: 343 P----NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVD 398

Query: 447 ALLLWKEIKER 457
            + L++++  R
Sbjct: 399 GMELFRDMSRR 409



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 134/338 (39%), Gaps = 58/338 (17%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           ++ + V + G M +       P  V ++ ++SA+ K    D       +M  +GV  N  
Sbjct: 45  KLDEAVDLFGEMVKSR---PFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLY 101

Query: 288 TYNI-----------------------------------LLKGYCQQLQIDKAKELLREM 312
           TYNI                                   LL G+C   +I +A  L+ +M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
             +   +PD V++  L+ G    + ++ A+     M  +G  P  ++Y  ++       +
Sbjct: 162 V-EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
           P LA  + ++M    +++ D+V ++ +++  C+   V++A  +   M   G  P+V TY 
Sbjct: 221 PDLALNLLNKM-EKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           SL + +    +  +A  L  ++ ER                 + P+    ++L D   + 
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLER----------------KINPNVVTFNSLIDAFAKE 323

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRM 528
               +A ++   M +  I PN   Y  +     MH R+
Sbjct: 324 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/357 (18%), Positives = 130/357 (36%), Gaps = 86/357 (24%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS-------- 52
           ML     P+V  +++++   A  G    +E+ KLFD +++R     DP+IV+        
Sbjct: 301 MLERKINPNVVTFNSLIDAFAKEGK--LIEAEKLFDEMIQRS---IDPNIVTYNSLINGF 355

Query: 53  -------------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
                              D  PD   YN ++N      K    ++LF  M   G   + 
Sbjct: 356 CMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNT 415

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           +TY  +I    +AS       V ++++  G+   + T+ +L+      G LE A  + + 
Sbjct: 416 VTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 475

Query: 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
           +++ + +                                                  P+ 
Sbjct: 476 LQKSKME--------------------------------------------------PDI 485

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  + +G    G+V D   +  ++  +      PD + Y T++S   K G  + A  +
Sbjct: 486 YTYNIMSEGMCKAGKVEDGWDLFCSLSLK---GVKPDVIAYNTMISGFCKKGLKEEAYTL 542

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +M   G   +  TYN L++ + +      + EL++EM    +   D  +Y ++ D
Sbjct: 543 FIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMR-SCRFAGDASTYGLVTD 598


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 220/465 (47%), Gaps = 56/465 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+   +ST+++ L++      +++VKLFD +VK              +PD   
Sbjct: 38  MFKLGLQPNHVTFSTLLNGLSSKAK--IIDAVKLFDEMVKM-----------GYEPDVIT 84

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+ ++N    +G     +QL  +M E G KP+V+ Y+ +I  LC    +  L+   +E +
Sbjct: 85  YSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLC----KDKLITEAMEFL 140

Query: 120 LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            EM   GI+  + T+ S++  +   G    A ++ + M E  R+V       ++      
Sbjct: 141 SEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE--RNVMPDTVTFNILVDGLS 198

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSR 214
            EG   +   VFE ++   + P+                          ++ K  AP+ R
Sbjct: 199 KEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVR 258

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y  L+KG+   GR+ +   +L  M  +   A  PD VTY+T++    + G    A+++L
Sbjct: 259 SYNILIKGHCKSGRIDEAKGLLAEMSHK---ALTPDTVTYSTLMKGFCQDGRPQDAQKLL 315

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM   G+  + +TY+I+L G C+Q  +D+A ELL+ M  ++KIEP++  Y ILI G   
Sbjct: 316 EEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAM-QESKIEPNIFIYTILIQGMCN 374

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI- 393
                 A   F+ +  +GI P  ++YT ++       +  L+N+   E+ RD  V   + 
Sbjct: 375 FGKLEAARELFSNLFVKGIQPDVVTYTVMISGLL---KGGLSNEAC-ELFRDMAVHGCLP 430

Query: 394 --VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
               +N++++G+ R G    A R+IE M   GF  + +T+  L++
Sbjct: 431 NSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 209/469 (44%), Gaps = 77/469 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   ++ +LN  ++  K    ++LFD+M + G +PDV+TY+ +I    +     + + 
Sbjct: 44  QPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQ 103

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+++ E G                   ++ +  TI+ ++       CK           
Sbjct: 104 LLKKMEEKGCK----------------PNVVVYSTIIDSL-------CK----------- 129

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                         +KL+  ++   SE  ++ +  +PN   Y++++ G+ N GR ++   
Sbjct: 130 --------------DKLITEAMEFLSE--MVNRGISPNVVTYSSILHGFCNLGRSNEATS 173

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      PD VT+  +V  L K G +  A+ V   M   GV  N  TYN L+ 
Sbjct: 174 LFKQMVERN---VMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMD 230

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRAR 351
           GYC Q Q+D+A++L   M       P V SYNILI G      ID++ G L    EM  +
Sbjct: 231 GYCSQSQMDEAQKLFNIMVRKG-CAPSVRSYNILIKGHCKSGRIDEAKGLLA---EMSHK 286

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            + P  ++Y+TLMK F    +P+ A K+ +EM R   +  D++ ++++++G C+ G ++E
Sbjct: 287 ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM-RSYGLLPDLMTYSIVLDGLCKQGHLDE 345

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A  +++ M+E+   PN+  Y  L  G+    K   A  L+  +                 
Sbjct: 346 AFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNL----------------F 389

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              ++PD      +    ++     +A E+   M  HG  PN   Y  I
Sbjct: 390 VKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVI 438



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 108/274 (39%), Gaps = 55/274 (20%)

Query: 249 PDHVTYTTVVSALVKAGS--MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
           PD  T T +++    +       A  VL  M ++G+  N +T++ LL G           
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNG----------- 56

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
                ++  AKI                ID    A+  F+EM   G  P  I+Y+T++  
Sbjct: 57  -----LSSKAKI----------------ID----AVKLFDEMVKMGYEPDVITYSTIING 91

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
                   +A ++  +M  +   K ++V ++ +++  C+  L+ EA   +  M   G  P
Sbjct: 92  LCKMGSTTMAIQLLKKM-EEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISP 150

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           NV TY S+ +G     +  EA  L+K++ ER                 + PD    + L 
Sbjct: 151 NVVTYSSILHGFCNLGRSNEATSLFKQMVER----------------NVMPDTVTFNILV 194

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D   +     +A  +   M E G+ PN   Y  +
Sbjct: 195 DGLSKEGMILEAQCVFETMIEKGVEPNVNTYNAL 228


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 223/457 (48%), Gaps = 43/457 (9%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV-- 135
           L L  QM   G KPD+ T +++I       +      V  +IL+MG+ L     ++L+  
Sbjct: 87  LSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFH 146

Query: 136 --AAYVGFGDLEIAETIV--QAMREGR-RDVCKIIREL-------DLEDYSSENEGDDDD 183
                +GF    +   I+     + G+ R   +++R++       ++  YS+  +G   D
Sbjct: 147 DHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKD 206

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                 KL+ ++    SE  ++ K   P    +++L+ G+   G+  D  R+   M  + 
Sbjct: 207 ------KLVTDAYGLYSE--MIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKN 258

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
            N   PD  T+  +V AL K G +  A+ V+A M + GV    +TYN L+ GYC   ++ 
Sbjct: 259 IN---PDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVG 315

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           KAK +L  +    ++ P+  SYNI+I+GF  I     AL  F+EM  RGIAP K++Y +L
Sbjct: 316 KAKHVL-SIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSL 374

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +     + +   A ++ DEM  +  +  DIV +N L++ +C+   V++A  +++++KE+G
Sbjct: 375 IDGLCKAGRIPYAWELVDEM-HNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHG 433

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PN+ TY  L +G+      G  L   +++ +   +K   VNA +             +
Sbjct: 434 IQPNMCTYNILIDGLC----KGGQLKNAQDVFQDLLIKGYNVNAWT------------YN 477

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            + +   +   F +A  +++ ME++GI P+   Y+ I
Sbjct: 478 IMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETI 514



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 175/405 (43%), Gaps = 42/405 (10%)

Query: 45  FSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC 103
           F D  +      +   Y  ++N    +G+ +  LQ+  Q+       +V+ Y+ +I  LC
Sbjct: 145 FHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLC 204

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
                        E I++  I   + TF SL+  +   G  + A  +   M         
Sbjct: 205 KDKLVTDAYGLYSEMIVKR-IPPTVVTFSSLIYGFCIVGKFKDAFRLFNEM--------- 254

Query: 164 IIRELDLEDYSSE-------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
           +++ ++ + Y+          EG   +   V   ++   + P+                Y
Sbjct: 255 VMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVT-------------Y 301

Query: 217 TTLMKGY--MNE-GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
            TLM GY  +NE G+    + ++  MR        P+  +Y  +++   K   +D A  +
Sbjct: 302 NTLMDGYCLVNEVGKAKHVLSIISRMR------VAPNSRSYNIMINGFCKIKMVDEALCL 355

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM   G+  +++TYN L+ G C+  +I  A EL+ EM ++  I  D+V+YN LID F 
Sbjct: 356 FHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNC-IPADIVTYNSLIDVFC 414

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A+    +++  GI P   +Y  L+       Q K A  VF ++L      V+ 
Sbjct: 415 KNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKG-YNVNA 473

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
             +N+++ G C+ GL +EA+ ++ +M++NG  P+  TY ++   +
Sbjct: 474 WTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQAL 518



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 29/237 (12%)

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV------------ 282
           +L    + E     PD  T + +++     G M  A  V A++ ++G+            
Sbjct: 86  VLSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLF 145

Query: 283 ---------PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
                      N +TY IL+ G C+  Q   A ++LR++ +   +  +VV Y+ +IDG  
Sbjct: 146 HDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQI-EGKLVNTNVVMYSTIIDGLC 204

Query: 334 ---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
              L+ D+ G    ++EM  + I PT +++++L+  F +  + K A ++F+EM+    + 
Sbjct: 205 KDKLVTDAYG---LYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMK-NIN 260

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            D   +N+LV+  C+ G ++EAK +I  M + G  P V TY +L +G  L  + G+A
Sbjct: 261 PDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKA 317



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 149/338 (44%), Gaps = 25/338 (7%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           IV    P    +++++     +GK K   +LF++M      PD  T+N+++    +  + 
Sbjct: 220 IVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKI 279

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                V+  +++ G+   + T+ +L+  Y    ++  A+ ++  +   R  V    R  +
Sbjct: 280 KEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSII--SRMRVAPNSRSYN 337

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +           D+   +F ++    I             AP+   Y +L+ G    GR+
Sbjct: 338 IMINGFCKIKMVDEALCLFHEMCCRGI-------------APHKVTYNSLIDGLCKAGRI 384

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
                ++  M    +N    D VTY +++    K   +D+A  ++ ++   G+  N  TY
Sbjct: 385 PYAWELVDEM---HNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTY 441

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFN 346
           NIL+ G C+  Q+  A+++ +++        +  +YNI+I+G     L D+   A    +
Sbjct: 442 NILIDGLCKGGQLKNAQDVFQDLLIKG-YNVNAWTYNIMINGLCKEGLFDE---AEVLLS 497

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +M   GI P  ++Y T+++A     + + A K+  EM+
Sbjct: 498 KMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMV 535



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 41/287 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P V  ++T++       + G  + V     ++ R+R            P++ +
Sbjct: 289 MMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVL---SIISRMR----------VAPNSRS 335

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N    +    + L LF +M   G  P  +TYN +I    +A R   + +  E + 
Sbjct: 336 YNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGR---IPYAWELVD 392

Query: 121 EMG---ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDYSS 175
           EM    I   + T+ SL+  +     ++ A  +V+ ++E   + ++C     +D      
Sbjct: 393 EMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILID----GL 448

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   +  +VF+              LL K +  N+  Y  ++ G   EG   +   +
Sbjct: 449 CKGGQLKNAQDVFQD-------------LLIKGYNVNAWTYNIMINGLCKEGLFDEAEVL 495

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           L  M   EDN   PD VTY T++ AL      ++A+++L EM   GV
Sbjct: 496 LSKM---EDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGV 539


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 141/523 (26%), Positives = 237/523 (45%), Gaps = 57/523 (10%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           RSG   +V   + +V+ L     DG +E V  F   V+    +          PD   YN
Sbjct: 218 RSGVGVNVYTLNIMVNALC---KDGKMEKVGTFLSEVQEKGVY----------PDIVTYN 264

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            +++A ++ G  ++  +L   M   G  P V TYN +I    +  +      V   +L  
Sbjct: 265 TLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS 324

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----EN 177
           G++   TT++SL+      GD    E I   MR   RDV       DL  +SS       
Sbjct: 325 GLSPDSTTYRSLLMEACKKGDAVETENIFSDMRS--RDVVP-----DLVCFSSMMSLFTR 377

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G+ D     F        N   E  L+P     ++ IYT L++GY  +G +S+ + +  
Sbjct: 378 SGNLDKALMYF--------NSVKEAGLIP-----DNVIYTILIQGYCRKGMISEAMNLRN 424

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M +Q       D VTY T++  L K   +  A ++  EMT  G+  +  T  IL+ G+C
Sbjct: 425 EMLQQ---GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHC 481

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +   +  A EL ++M +  +I+ DVV+YN L+DGF  + D   A   + +M ++ I PT 
Sbjct: 482 KLGNLQNAMELFKKMKEK-RIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 540

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           IS++ L+ A         A +V+DEM+    +K  ++  N +++GYCR G   + +  +E
Sbjct: 541 ISFSILVNALCSKGHLSEAFRVWDEMI-SKSIKPTVMICNSMIKGYCRSGNASDGEIFLE 599

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           +M   GF P+  +Y +L  G        +A  L K+++E     K+G          L P
Sbjct: 600 KMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEE-----KQG---------GLVP 645

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D    +++     R    ++A  ++  M E G+ P+++ Y  +
Sbjct: 646 DVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSL 688



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/459 (22%), Positives = 193/459 (42%), Gaps = 43/459 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V  ++TV++ L   G               +R ++     + S   PD+  Y ++
Sbjct: 290 GFSPGVYTYNTVINGLCKHGK-------------YERAKEVFAEMLRSGLSPDSTTYRSL 336

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           L      G   +   +F  M      PD++ ++ M+ L  R+      +     + E G+
Sbjct: 337 LMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGL 396

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD-- 182
                 +  L+  Y   G       I +AM   R ++ +    +D+  Y++   G     
Sbjct: 397 IPDNVIYTILIQGYCRKG------MISEAMNL-RNEMLQQGCAMDVVTYNTILHGLCKRK 449

Query: 183 ---DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              + D++F        N  +E  L P ++       T L+ G+   G + + + +   M
Sbjct: 450 MLGEADKLF--------NEMTERGLFPDSYT-----LTILIDGHCKLGNLQNAMELFKKM 496

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           + +       D VTY T++    K G +D A+++ A+M    +    I+++IL+   C +
Sbjct: 497 KEKRIKL---DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSK 553

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             + +A  +  EM   + I+P V+  N +I G+    +++    F  +M + G  P  IS
Sbjct: 554 GHLSEAFRVWDEMISKS-IKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCIS 612

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIER 418
           Y TL+  F        A  +  +M       V D+  +N ++ G+CR   ++EA+ ++ +
Sbjct: 613 YNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRK 672

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           M E G  P+ +TY SL NG        EA     E+ +R
Sbjct: 673 MIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQR 711



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 171/414 (41%), Gaps = 78/414 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLRSG  P    + +++      GD   VE+  +F  +  R           D  PD   
Sbjct: 321 MLRSGLSPDSTTYRSLLMEACKKGD--AVETENIFSDMRSR-----------DVVPDLVC 367

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++++++     G   K L  F+ + E G  PD + Y ++I+   R       + +   +L
Sbjct: 368 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEML 427

Query: 121 EMGITLCMTTFQS-----------------------------------LVAAYVGFGDLE 145
           + G  + + T+ +                                   L+  +   G+L+
Sbjct: 428 QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQ 487

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS------ 199
            A  + + M+E R  +  +     L+ +     GD D   E++  ++   I P+      
Sbjct: 488 NAMELFKKMKEKRIKLDVVTYNTLLDGFGKV--GDIDTAKEIWADMVSKEILPTPISFSI 545

Query: 200 -----------SEP-----PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                      SE       ++ K+  P   I  +++KGY   G  SD    L  M  + 
Sbjct: 546 LVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISE- 604

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM--TRIGVPANRITYNILLKGYCQQLQ 301
                PD ++Y T++   VK  +M +A  ++ +M   + G+  +  TYN +L G+C++ Q
Sbjct: 605 --GFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQ 662

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           + +A+ +LR+M +   + PD  +Y  LI+GF+  D+   A  F +EM  RG +P
Sbjct: 663 MKEAEAVLRKMIERG-VNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSP 715



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 131/323 (40%), Gaps = 48/323 (14%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQ-VLAEMTRIGVP----------------ANRI 287
           N  H   ++ + ++  LV++G +  A+  VL  + R GV                 +N  
Sbjct: 98  NFKHTS-LSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDS 156

Query: 288 TYNILLKGYCQQLQIDKAKE---LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
            +++L++ + Q  ++ +A E   LLR       I+    + N LI   + I     A   
Sbjct: 157 VFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSID----ACNALIGSLVRIGWVELAWRI 212

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           + E+   G+     +   ++ A     + +       E +++  V  DIV +N L+  Y 
Sbjct: 213 YQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSE-VQEKGVYPDIVTYNTLISAYS 271

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE----------- 453
             GL+EEA  ++  M   GF P V TY ++ NG+    K   A  ++ E           
Sbjct: 272 SQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 331

Query: 454 -----IKERCE----VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
                + E C+    V+ E + +D      + PD     ++  +  R+    KAL     
Sbjct: 332 TYRSLLMEACKKGDAVETENIFSDMR-SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNS 390

Query: 505 MEEHGIPPNKTKYKKIYVEMHSR 527
           ++E G+ P+   Y  I ++ + R
Sbjct: 391 VKEAGLIPDNVIY-TILIQGYCR 412


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 213/434 (49%), Gaps = 58/434 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P   AYNAVL A ++   P    +L   M   G  P+V TYN++++ LCAR  R+  L  
Sbjct: 118 PSLLAYNAVLLALSDASLPSA-RRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGV 176

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V + +   G    + T+ +LVAA+   G+++ AE +V  MREG   V   +   +     
Sbjct: 177 VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREG--GVRPSLVTFNTVVNG 234

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  +D  ++F+++    + P                 Y TL+ GY   G + + + 
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGVS-------------YNTLVSGYCKAGCLHEALA 281

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT------ 288
           +   M ++      PD VT+T+++ A+ +AG+++RA  ++ +M   G+  N  T      
Sbjct: 282 VFAEMAQK---GVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALID 338

Query: 289 -----------------------------YNILLKGYCQQLQIDKAKELLREMADDAKIE 319
                                        YN+L+ GYC+  ++D+A+EL+ EM +   ++
Sbjct: 339 GFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEM-EAKGMK 397

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PDVV+Y+ ++ G+  I D+  A     +M  +G+ P  I+Y++L++      +   A ++
Sbjct: 398 PDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACEL 457

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F++ML+   ++ D   +  L++G+C+ G V++A  + + M + G  P+V TY  L +G+S
Sbjct: 458 FEKMLQ-LGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLS 516

Query: 440 LARKPGEAL-LLWK 452
            + +  EA  LL+K
Sbjct: 517 KSARTKEAQRLLFK 530



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 160/328 (48%), Gaps = 26/328 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN   Y TL+  +   G V    R++G MR   +    P  VT+ TVV+ L KAG M+ 
Sbjct: 187 APNVVTYNTLVAAFCRAGEVDAAERLVGVMR---EGGVRPSLVTFNTVVNGLCKAGRMED 243

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR++  EM R G+  + ++YN L+ GYC+   + +A  +  EMA    + PDVV++  LI
Sbjct: 244 ARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVV-PDVVTFTSLI 302

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
                  +   A+    +MR RG+   + ++T L+  F  +     A     EM R+ R+
Sbjct: 303 HAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEM-RECRI 361

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG----------IS 439
           +  +V +N+L+ GYC++G ++EA+ +I  M+  G  P+V TY ++ +G            
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE 421

Query: 440 LARK-------PGEALLLWKEIKERCEVKKEGVNA---DSDLPPPLKPDEELLDALADIC 489
           L RK       P +A+     I+  CE ++ G      +  L   L+PDE     L D  
Sbjct: 422 LNRKMLKKGVVP-DAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKY 517
            +    +KAL +   M + G+ P+   Y
Sbjct: 481 CKEGNVQKALSLHDEMIKKGVLPDVVTY 508



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 124/518 (23%), Positives = 212/518 (40%), Gaps = 107/518 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG----------DD----GPVESVKLFDVVVKRVRKFS 46
           MLR G  P+V  ++ +V  L A G          DD    G   +V  ++ +V    +  
Sbjct: 145 MLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAG 204

Query: 47  DPDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           + D              +P    +N V+N     G+ +   ++FD+M   G  PD ++YN
Sbjct: 205 EVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYN 264

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            ++    +A   H  + V   + + G+   + TF SL+ A    G+LE A  +V  MRE 
Sbjct: 265 TLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRE- 323

Query: 158 RRDVCKIIRELDLEDYSSE-------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
                   R L + +++           G  DD     +++    I PS           
Sbjct: 324 --------RGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVV--------- 366

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
                Y  L+ GY   GR+ +   ++  M   E     PD VTY+T++S   K G  D A
Sbjct: 367 ----CYNVLINGYCKLGRMDEARELIHEM---EAKGMKPDVVTYSTILSGYCKIGDTDSA 419

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M + GV  + ITY+ L++G C++ ++  A EL  +M     ++PD  +Y  LID
Sbjct: 420 FELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKML-QLGLQPDEFTYTTLID 478

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTT---------------------------- 362
           G     +   AL+  +EM  +G+ P  ++Y+                             
Sbjct: 479 GHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVP 538

Query: 363 ----------------------LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
                                 L+K F++      A+KV+  ML D   K+D   +++L+
Sbjct: 539 DNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSML-DRHWKLDGSVYSVLI 597

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            G+CR G + +A    +++   GF PN  +  SL  G+
Sbjct: 598 HGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGL 635



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 139/303 (45%), Gaps = 27/303 (8%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + Y  V+ AL  A S+  AR++LA M R GV  N  TYNIL++  C + Q ++A  +
Sbjct: 118 PSLLAYNAVLLALSDA-SLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGV 176

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           + +    A   P+VV+YN L+  F    +   A      MR  G+ P+ +++ T++    
Sbjct: 177 VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLC 236

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + + + A K+FDEM R+  +  D V++N LV GYC+ G + EA  +   M + G  P+V
Sbjct: 237 KAGRMEDARKMFDEMAREG-LTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDV 295

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            T+ SL + +  A     A+ L  +++ER                 L+ +E    AL D 
Sbjct: 296 VTFTSLIHAMCRAGNLERAVALVGQMRER----------------GLRMNEFTFTALIDG 339

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRA 548
             R  F   AL  +  M E  I P+   Y          +  + +    R D  RE    
Sbjct: 340 FCRNGFLDDALLAMKEMRECRIQPSVVCYN---------VLINGYCKLGRMDEARELIHE 390

Query: 549 AEA 551
            EA
Sbjct: 391 MEA 393


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 216/460 (46%), Gaps = 46/460 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P +  ++T++S L +      +++VKLFD +VK              +PD   
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAK--IMDAVKLFDEMVKM-----------GHEPDVIT 47

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+ ++N    +G     LQL  +M E G KP+V+ YN +I  LC        + F  E +
Sbjct: 48  YSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMV 107

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV--------------CK-- 163
            E GI   + T+ S++  +   G +  A ++ + M E  R+V              CK  
Sbjct: 108 KE-GIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVE--RNVIPNKVTFTILIDGLCKKR 164

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS--EPPLL-----PKTFAPNSRIY 216
           +I E  L  + +  E   + D   +  L+    + S   E   L      K  APN R Y
Sbjct: 165 MISEAWLV-FETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSY 223

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             L+ G+   GR+ +   +L  M  +   +  PD  TY+T++    + G    A+++L E
Sbjct: 224 NILINGHCKSGRIDEAKGLLAEMSHK---SLTPDIFTYSTLMRGFCQVGRPQEAQELLKE 280

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  N ITY+I+L G C+   +D+A ELL+ M  ++KIEP++  Y ILI+G     
Sbjct: 281 MCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAM-QESKIEPNIFIYTILIEGMCTFG 339

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A   F+ +  +GI PT ++YT ++           A ++F EM  +  +  +   +
Sbjct: 340 KLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLP-NSCTY 398

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
           N++++G+ R G    A R+IE M   GF  + +T+  L++
Sbjct: 399 NVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 198/441 (44%), Gaps = 38/441 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    +N +L+   +  K    ++LFD+M + G +PDV+TY+ +I    +     + + 
Sbjct: 7   QPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+++ E G        +  V AY    D    + +V    +   ++ K     D+  YS
Sbjct: 67  LLKKMEEKGC-------KPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 175 S-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           S      N G  ++   +F++++  ++              PN   +T L+ G   +  +
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNV-------------IPNKVTFTILIDGLCKKRMI 166

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           S+   +   M  +      PD  TY  +V        MD A+++   M R G   N  +Y
Sbjct: 167 SEAWLVFETMTEK---GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSY 223

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           NIL+ G+C+  +ID+AK LL EM+  + + PD+ +Y+ L+ GF  +     A     EM 
Sbjct: 224 NILINGHCKSGRIDEAKGLLAEMSHKS-LTPDIFTYSTLMRGFCQVGRPQEAQELLKEMC 282

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           + G+ P  I+Y+ ++           A ++   M ++ +++ +I  + +L+EG C  G +
Sbjct: 283 SYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAM-QESKIEPNIFIYTILIEGMCTFGKL 341

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK------ERC--EVK 461
           E A+ +   +   G  P V TY  + +G+       EA  L++E+         C   V 
Sbjct: 342 EAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVI 401

Query: 462 KEGVNADSDLPPPLKPDEELL 482
            +G   + D P  ++  EE++
Sbjct: 402 IQGFLRNGDTPNAVRLIEEMV 422



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 27/306 (8%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y+T++ G    G   +T   L  +++ E+    P+ V Y T++ +L K   +  A
Sbjct: 43  PDVITYSTIINGLCKMG---NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEA 99

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
               +EM + G+P +  TY+ +L G+C   ++++A  L ++M +   I P+ V++ ILID
Sbjct: 100 MDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVI-PNKVTFTILID 158

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD---P 387
           G       + A   F  M  +G+ P   +Y  L+  +   SQ   A K+F+ M R    P
Sbjct: 159 GLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAP 218

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            V+    ++N+L+ G+C+ G ++EAK ++  M      P++ TY +L  G     +P EA
Sbjct: 219 NVR----SYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEA 274

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             L KE+                L P L     +LD L     +     +A E++  M+E
Sbjct: 275 QELLKEM------------CSYGLLPNLITYSIVLDGLC----KHGHLDEAFELLKAMQE 318

Query: 508 HGIPPN 513
             I PN
Sbjct: 319 SKIEPN 324



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 21/252 (8%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M ++G+    +T+N LL G C + +I  A +L  EM      EPDV++Y+ +I+G   + 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGH-EPDVITYSTIINGLCKMG 59

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           ++  AL    +M  +G  P  ++Y T++ +         A   F EM+++  +  D+  +
Sbjct: 60  NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG-IPPDVFTY 118

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + ++ G+C +G V EA  + ++M E    PN  T+  L +G+   R   EA L+++ + E
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALAD-ICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +                 L+PD    +AL D  C R+    +A ++   M+  G  PN  
Sbjct: 179 K----------------GLEPDVYTYNALVDGYCSRSQ-MDEAQKLFNIMDRKGCAPNVR 221

Query: 516 KYKKIYVEMHSR 527
            Y  I +  H +
Sbjct: 222 SY-NILINGHCK 232


>gi|297738088|emb|CBI27289.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 203/459 (44%), Gaps = 61/459 (13%)

Query: 55  KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A N  L  C+ +L    +  ++ + M   G +PD  ++  +  L A    +  +V
Sbjct: 210 KPDLDACNVALEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIV 269

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLED 172
            +   +   G +     +  L+ AYV  G+LE ++ TI +++RE                
Sbjct: 270 ELEGLMRGFGFSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLRE---------------- 313

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                   DD+    F +                         Y  ++KG++  G + D 
Sbjct: 314 --------DDEQGPNFSE-----------------------ETYCEVVKGFLQNGSIKDL 342

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             ++   ++ E ++   D      ++SA V  G +D+A  +L EM   GV      Y  +
Sbjct: 343 ASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSI 402

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           LK +C++ +  +A +L+ E++    ++ D  SY+ LI+  +   D   A + F +MR   
Sbjct: 403 LKAFCKEHRTAEAAQLVTEISS-LGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREAR 461

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +   K SY T+M     + +P+L     DE++ DPRV+V    WN ++  +C++G +E+A
Sbjct: 462 VPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDA 521

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE-GVNADSDL 471
           +R   RM    F PN  TY SL NG + A K    L+LW E+K R  +  E GV      
Sbjct: 522 RRTFRRMIFLQFEPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGV------ 575

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
               K D  L+DA     V+  FF   +++V   +E  I
Sbjct: 576 ----KFDHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKI 610


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 132/511 (25%), Positives = 226/511 (44%), Gaps = 71/511 (13%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC-ARASRKH 110
           + +P    +  +++      + K+ L  F++M EF A P+  TYNV++  LC AR + K 
Sbjct: 2   ECQPTVVTWTIIIDGFCKANQLKQALACFEKMREFVA-PNERTYNVVVNGLCKARLTSK- 59

Query: 111 LLVFVLERILEM----GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------ 154
                 E + EM     +   + T+ +++  +   G+++ A  I++ M            
Sbjct: 60  ----AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVT 115

Query: 155 ---------REGRRD-VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS---- 200
                    R+G+ D  C+++RE+ L+          + D   F  L+    N       
Sbjct: 116 YTSVVDGLCRDGKMDRACEMVREMKLKGV--------EPDKFTFSALITGWCNARKVDEA 167

Query: 201 ----EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
               +  L   ++ P+   YT L+ G+   G +   ++MLG M   E     P+ VTY++
Sbjct: 168 LKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM---EGRKCVPNVVTYSS 224

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  L KAG +D+A  +   MT  G   N +TY  L+ G C   ++D A+ L+ EM    
Sbjct: 225 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
              PD VSYN L+DG+  +     A   F EM  +   P +I+YT L++ F  +S+ + A
Sbjct: 285 -CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEA 343

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             + + M     +  D+V ++++V GY R     EA   I+ M      PN  TY SL +
Sbjct: 344 RFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLID 403

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+  A +   A+          EV K  VN    + P +     ++ AL     R     
Sbjct: 404 GLCKAGRVDHAM----------EVLKNMVN--KRVEPSVGTFNSVIGALC----RLGDMD 447

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           +A +++  M  HG+ P    Y  + +E  SR
Sbjct: 448 EAWKLLVAMAAHGLEPGMVTYTTL-LEGFSR 477



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 199/433 (45%), Gaps = 32/433 (7%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P +  +STV++     G+          D   + +R+    D ++   PD   Y +V++ 
Sbjct: 75  PDLVTYSTVINGFCKQGE---------MDRACEILREMVTRDGIA---PDVVTYTSVVDG 122

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITL 126
               GK  +  ++  +M   G +PD  T++ +I   C        L    E +       
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+ +L+  +   G+LE A  ++  M EGR+ V  ++    L  +     GD D   +
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVM-EGRKCVPNVVTYSSLL-HGLCKAGDLDQALD 240

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           +F ++               K   PN   YTTL+ G     +V D  R+L  M       
Sbjct: 241 LFRRMTS-------------KGCVPNVVTYTTLIHGLCAAHKV-DAARLL--MDEMTATC 284

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             PD V+Y  ++    + G ++ A+Q+  EM       +RITY  L++G+C   ++++A+
Sbjct: 285 CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEAR 344

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            LL  M   A I+PDVV+Y+I++ G+        A  F  EM AR +AP  ++Y++L+  
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDG 404

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
              + +   A +V   M+ + RV+  +  +N ++   CR+G ++EA +++  M  +G  P
Sbjct: 405 LCKAGRVDHAMEVLKNMV-NKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEP 463

Query: 427 NVATYGSLANGIS 439
            + TY +L  G S
Sbjct: 464 GMVTYTTLLEGFS 476



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 185/411 (45%), Gaps = 24/411 (5%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  KPD   Y A+++     G  +K +++   M      P+V+TY+ ++    +A     
Sbjct: 178 SSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQ 237

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + +  R+   G    + T+ +L+        ++ A  ++  M         +     L+
Sbjct: 238 ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD 297

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y     G  ++  ++F+++               K+  P+   YT L++G+ N  R+ +
Sbjct: 298 GYC--RLGRIEEAKQLFKEMAT-------------KSCLPDRITYTCLVRGFCNASRLEE 342

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +L  M+        PD VTY+ VV+   +A     A + + EM    V  N +TY+ 
Sbjct: 343 ARFLLENMKTAA--GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSS 400

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G C+  ++D A E+L+ M +  ++EP V ++N +I     + D   A      M A 
Sbjct: 401 LIDGLCKAGRVDHAMEVLKNMVNK-RVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAH 459

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEM---LRDPRVKVDIV---AWNMLVEGYCR 405
           G+ P  ++YTTL++ F+ + + ++A ++F+ M    +      ++V   A++ L+ G C+
Sbjct: 460 GLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCK 519

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              +++A  ++E ++     P      ++ +G+  A +  EA  L   I +
Sbjct: 520 AREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISK 570



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 108/230 (46%), Gaps = 17/230 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK---PDVLTYNVMIKLCARASRKHLL 112
           PD   Y+ V+   A   + K+F++  + + E  A+   P+ +TY+ +I    +A R    
Sbjct: 358 PDVVTYSIVV---AGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHA 414

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           + VL+ ++   +   + TF S++ A    GD++ A  ++ AM     +   +     LE 
Sbjct: 415 MEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEG 474

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           +S    G  +   E+FE +   +   SS   L+P+      + ++ L++G      +   
Sbjct: 475 FS--RTGRMEIAYELFEVMRKKAKKSSSAANLVPE------QAFSALIRGLCKAREIDKA 526

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           + ++  +R +E   +  D +    +V  L++AG  + A +++  ++++G+
Sbjct: 527 MAVVEELRSRECEPAEEDCLA---IVDGLLRAGRTEEAGKLINSISKVGL 573


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 224/462 (48%), Gaps = 47/462 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M  +G+ P     + +++ +A +GD DG ++ ++             DP++V+       
Sbjct: 138 MKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGC---------DPNVVT------- 181

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y A++ A A   K ++ ++L ++M E G  P+++TYNV++    + S       V++++
Sbjct: 182 -YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 240

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +E G    + TF SLV  +   G+++ A  ++  M      V K +R  ++  YS+  +G
Sbjct: 241 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM------VAKGMRP-NVVTYSALIDG 293

Query: 180 DDDDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                      EV E++    + P             ++  Y+ L+ G     ++ +  +
Sbjct: 294 LCKSQKFLEAKEVLEEMKTRGVTP-------------DAFTYSALIHGLCKADKIEEAEQ 340

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ML   RR   +   PD V Y++++ A  K+G +  A++ L EM +     + +TYN ++ 
Sbjct: 341 ML---RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 397

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+  +I +A+ +L +M +   + PDVV+Y+ +I+G    D    A    + M   G  
Sbjct: 398 GLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN 457

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YTT++       + + A  +   M R      ++V +  L+ G C+   V+EA+R
Sbjct: 458 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR-AGCAPNVVTYTTLISGLCKARKVDEAER 516

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           ++E M+  G  PN+ TY ++ NG+ ++ +  EA  L + +K+
Sbjct: 517 VMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 558



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 212/462 (45%), Gaps = 62/462 (13%)

Query: 34  LFDVVV--KRVRKFSD---PDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           L  V+V  K+ R+  D    ++++  +PD  +YN V++   N G     L+L ++M   G
Sbjct: 83  LLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAG 142

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
             PD  T+  +I   A A     L   ++ +  MG    + T+ +L+AA+     LE A 
Sbjct: 143 FAPDAFTHTPIITAMANAGD---LDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAM 199

Query: 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
            +++ MRE R     ++    L D   +        D V +K++                
Sbjct: 200 KLLEEMRE-RGCPPNLVTYNVLVDALCKLSMVGAAQD-VVKKMIEGG------------- 244

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           FAPN   + +L+ G+   G V D  ++LG M  +      P+ VTY+ ++  L K+    
Sbjct: 245 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK---GMRPNVVTYSALIDGLCKSQKFL 301

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA------------ 316
            A++VL EM   GV  +  TY+ L+ G C+  +I++A+++LR MA               
Sbjct: 302 EAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 361

Query: 317 ----------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-I 353
                                 +  PDVV+YN +IDG   +   A A     +M+  G +
Sbjct: 362 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDV 421

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++Y+T++     S     A K+ D M +      D+V +  +++G C+ G +EEA+
Sbjct: 422 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCK-AGCNPDVVTYTTIIDGLCKCGRLEEAE 480

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            +++ MK  G  PNV TY +L +G+  ARK  EA  + +E++
Sbjct: 481 YLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 522



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 130/250 (52%), Gaps = 5/250 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   YT L+  +    ++ + +++L  MR   +    P+ VTY  +V AL K   +  A
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMR---ERGCPPNLVTYNVLVDALCKLSMVGAA 233

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           + V+ +M   G   N +T+N L+ G+C++  +D A++LL  M     + P+VV+Y+ LID
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG-MRPNVVTYSALID 292

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A     EM+ RG+ P   +Y+ L+     + + + A ++   M       
Sbjct: 293 GLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM-AGSGCT 351

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+V ++ ++  +C+ G + EA++ ++ M++    P+V TY ++ +G+    K  EA ++
Sbjct: 352 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVI 411

Query: 451 WKEIKERCEV 460
            ++++E  +V
Sbjct: 412 LEQMQESGDV 421



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 27/316 (8%)

Query: 234 RMLGAMRRQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           R  G + R E  AS  PD  +Y  V+S    AG +  A ++L EM   G   +  T+  +
Sbjct: 94  REAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPI 153

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +        +D A + LR M  D    P+VV+Y  LI  F        A+    EMR RG
Sbjct: 154 ITAMANAGDLDGAMDHLRSMGCD----PNVVTYTALIAAFARAKKLEEAMKLLEEMRERG 209

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  ++Y  L+ A    S    A  V  +M+ +     +++ +N LV+G+C+ G V++A
Sbjct: 210 CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI-EGGFAPNVMTFNSLVDGFCKRGNVDDA 268

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           ++++  M   G  PNV TY +L +G+  ++K  EA    KE+ E  E+K  GV       
Sbjct: 269 RKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA----KEVLE--EMKTRGVT------ 316

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
               PD     AL     +A    +A +++  M   G  P+   Y  I   +H+   + K
Sbjct: 317 ----PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSI---IHAFCKSGK 369

Query: 533 --HASQARQDRRRERK 546
              A +  Q+ R++RK
Sbjct: 370 LLEAQKTLQEMRKQRK 385



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 52/289 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDT 58
           M  SG  P V  +S+++     SG        KL +    ++ +RK           PD 
Sbjct: 345 MAGSGCTPDVVVYSSIIHAFCKSG--------KLLEAQKTLQEMRK-------QRKSPDV 389

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFG-AKPDVLTYNVMIK-LCARASRKHLLV--- 113
             YN V++    LGK  +   + +QM E G   PDV+TY+ +I  LC    +  +LV   
Sbjct: 390 VTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLC----KSDMLVEAQ 445

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L+R+ + G    + T+ +++      G LE AE ++Q M+   R  C      ++  Y
Sbjct: 446 KLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMK---RAGCAP----NVVTY 498

Query: 174 SSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++   G       D+ + V E++  N+  P            PN   Y T++ G    GR
Sbjct: 499 TTLISGLCKARKVDEAERVMEEM-RNAGCP------------PNLVTYNTMVNGLCVSGR 545

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           + +  +++  M+      S PD  TY T+V+AL+ +  +  A Q+L +M
Sbjct: 546 IKEAQQLVQRMKDGRAECS-PDAATYRTIVNALMSSDLVQEAEQLLEQM 593


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 139/549 (25%), Positives = 237/549 (43%), Gaps = 65/549 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVES-------------------VKLFDVVVKR 41
           M + G +PH   ++T++  L    D+G V+S                     L D + K 
Sbjct: 193 MEKRGIVPHNAVYNTIIKGLC---DNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKS 249

Query: 42  VRKFSDPDIV------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
            R  SD  ++      +   P+   YN ++N    LG   + + LF+QM E    PDV T
Sbjct: 250 AR-ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 308

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           YN++I    +  R      +L+ +++ G      T+ +L+ + V  G    A  + Q M 
Sbjct: 309 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 368

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
             RRD        +L        G  D   E+F+ +        ++   LP  +      
Sbjct: 369 --RRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLM--------TDRGCLPDIYT----- 413

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  ++ G     R+ D  ++L    R  +    PD VTY ++VS L KA  +D A +V  
Sbjct: 414 YNIMISGACRANRIDDARQLL---ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE 470

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            +   G   + +T + L+ G C+  ++D A++LLREM  +    PDVV+Y ILI GF   
Sbjct: 471 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS-APDVVAYTILIHGFCKA 529

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           D    +L FF+EM  +G  PT I+Y+ ++     S++ +    +   ML +  V  D + 
Sbjct: 530 DQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTML-ERGVTPDAIV 588

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  +++G C+    +EA  + + MK+ G  P V TY  L + +    +  EA+ L     
Sbjct: 589 YTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLL---- 644

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                  E + +D  L     PD    +++ D   ++A   KA  +   M+  G  P   
Sbjct: 645 -------EVMESDGCL-----PDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPF 692

Query: 516 KYKKIYVEM 524
            Y  +  ++
Sbjct: 693 MYSLLLTKL 701



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 177/404 (43%), Gaps = 37/404 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+   ++T++  L  SG    +++  L  ++++R           D KP    
Sbjct: 332 MVKYGCEPNFITYNTLMDSLVKSGK--YIDAFNLAQMMLRR-----------DCKPSHFT 378

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N +++    +G+     +LF  M + G  PD+ TYN+MI    RA+R      +LER+ 
Sbjct: 379 FNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMT 438

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR------------DVCKIIREL 168
           E G    + T+ S+V+       ++ A  + + +R G               +CK  R  
Sbjct: 439 EAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLD 498

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLM 220
           D E    E E +    D V   +L +    + +          +L K   P    Y+ ++
Sbjct: 499 DAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVI 558

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
                  RV D   +L  M  +      PD + YT+V+  L K+ S D A ++   M + 
Sbjct: 559 DKLCKSARVRDGCMLLKTMLER---GVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQT 615

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G     +TYN+L+   C+  ++D+A  LL  M  D  + PD V+YN + DGF    +   
Sbjct: 616 GCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCL-PDTVTYNSVFDGFWKSAEHDK 674

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           A   F  M++RG +PT   Y+ L+       +   A ++++E L
Sbjct: 675 AFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEAL 718



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 19/269 (7%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD +TY+T+++   KA    +A ++L EM + G+  +   YN ++KG C   ++D A   
Sbjct: 165 PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 224

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
            R+M  +    P V++Y IL+D        + A     +M   G AP  ++Y TL+  F 
Sbjct: 225 YRDMQRNCA--PSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC 282

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                  A  +F++ML +     D+  +N+L++GYC+    ++  ++++ M + G  PN 
Sbjct: 283 KLGNMDEAVVLFNQMLEN-SCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNF 341

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY +L + +  + K  +A  L + +  R                  KP     + + D+
Sbjct: 342 ITYNTLMDSLVKSGKYIDAFNLAQMMLRR----------------DCKPSHFTFNLMIDM 385

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             +      A E+   M + G  P+   Y
Sbjct: 386 FCKVGQLDLAYELFQLMTDRGCLPDIYTY 414



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 34/193 (17%)

Query: 298 QQLQ-IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           QQL  +DKA +           +    + N L+  F+    +  A   F   R    +P 
Sbjct: 107 QQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPD 166

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRV-----------------KVD------- 392
            I+Y+TL+  F  +   + A ++ DEM +   V                 +VD       
Sbjct: 167 SITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYR 226

Query: 393 ---------IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                    ++ + +LV+  C+   + +A  I+E M E G  PNV TY +L NG      
Sbjct: 227 DMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGN 286

Query: 444 PGEALLLWKEIKE 456
             EA++L+ ++ E
Sbjct: 287 MDEAVVLFNQMLE 299


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 206/456 (45%), Gaps = 42/456 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P    + T+++ L +      +++VKLFD + K               P    
Sbjct: 132 MFKLGLQPTHVTFGTLLNGLCSKAK--IIDAVKLFDEIGKM-----------GFAPSLIT 178

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++     +G     LQL  +M E G KPDV+ YN +I    +  R +  ++    ++
Sbjct: 179 YTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMV 238

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI   + T+ S++  +   G L  A ++ + M  GR  +   +    L D   + EG 
Sbjct: 239 DQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMI-GRNVMPNTVTFTILVDGLCK-EGM 296

Query: 181 DDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTT 218
             +   VFE +  N + P +                         ++ K FAP+ R+Y  
Sbjct: 297 ILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNI 356

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G+    R+++   +L  M    D    PD VTY+T++    +AG    A+++  EM 
Sbjct: 357 LINGHCKSRRLNEAKTLLSEMY---DRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMC 413

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+  + ITY+ILL G C+   +D+A  LL+ M  ++KIEP +  YNILI G       
Sbjct: 414 SYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAM-QESKIEPHICIYNILIQGMCNFGKL 472

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A   F+ +  +GI P+ ++YT ++           A ++F +M+ +  +  +   +N+
Sbjct: 473 EAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLP-NSCTYNV 531

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            ++G+ R G    A R+IE M   GF  + +T+  L
Sbjct: 532 AIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQML 567



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 27/313 (8%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           FAP+   YTT++KG    G  ++ +++L   ++ E+    PD V Y TV+ +L K    +
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLL---KKMEEKGCKPDVVAYNTVIDSLCKDRRAN 228

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A    +EM   G+P N +TY+ +L G+C   Q+++A  L ++M     + P+ V++ IL
Sbjct: 229 EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGR-NVMPNTVTFTIL 287

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD-- 386
           +DG         A   F  M   G+ P   +Y+ LM  + L SQ   A K+FD M+    
Sbjct: 288 VDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGF 347

Query: 387 -PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
            P V+V    +N+L+ G+C+   + EAK ++  M +    P+  TY +L  G   A +P 
Sbjct: 348 APSVRV----YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQ 403

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
            A  L+KE+   C                L PD      L D   +     +A  ++  M
Sbjct: 404 VAQKLFKEM---CSYG-------------LLPDSITYSILLDGLCKHGHLDEAFRLLKAM 447

Query: 506 EEHGIPPNKTKYK 518
           +E  I P+   Y 
Sbjct: 448 QESKIEPHICIYN 460



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 186/434 (42%), Gaps = 88/434 (20%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    +  +LN   +  K    ++LFD++ + G  P ++TY  +IK   +       + 
Sbjct: 138 QPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQ 197

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+++ E G        +  V AY          T++ ++ + RR               
Sbjct: 198 LLKKMEEKGC-------KPDVVAY---------NTVIDSLCKDRRA-------------- 227

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                  ++    F +++   I              PN   Y++++ G+ N G++++   
Sbjct: 228 -------NEAMYFFSEMVDQGI-------------PPNVVTYSSILHGFCNLGQLNEATS 267

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      P+ VT+T +V  L K G +  AR+V   MT  GV  +  TY+ L+ 
Sbjct: 268 LFKQMIGRN---VMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMD 324

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC Q Q+D+A++L   M       P V  YNILI+G         A T  +EM  R + 
Sbjct: 325 GYCLQSQMDEAQKLFDIMVGKG-FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLT 383

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM------------------------------- 383
           P  ++Y+TLM+ F  + +P++A K+F EM                               
Sbjct: 384 PDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRL 443

Query: 384 ---LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
              +++ +++  I  +N+L++G C  G +E A+ +   +   G  P+V TY  + +G+  
Sbjct: 444 LKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLK 503

Query: 441 ARKPGEALLLWKEI 454
                EA  +++++
Sbjct: 504 EGLSNEACEMFRKM 517



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 37/239 (15%)

Query: 249 PDHVTYTTVVSALVKAG--SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
           P+  T T +++ L  +    +  A   L +M ++G+    +T+  LL G C + +I  A 
Sbjct: 102 PNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAV 161

Query: 307 ELLREMA----------------------------------DDAKIEPDVVSYNILIDGF 332
           +L  E+                                   ++   +PDVV+YN +ID  
Sbjct: 162 KLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSL 221

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                +  A+ FF+EM  +GI P  ++Y++++  F    Q   A  +F +M+    V  +
Sbjct: 222 CKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMI-GRNVMPN 280

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            V + +LV+G C+ G++ EA+R+ E M ENG  P+  TY +L +G  L  +  EA  L+
Sbjct: 281 TVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLF 339



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 164/390 (42%), Gaps = 49/390 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V A++TV+  L    D    E++  F  +V       D  I     P+   
Sbjct: 202 MEEKGCKPDVVAYNTVIDSLCK--DRRANEAMYFFSEMV-------DQGI----PPNVVT 248

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+++L+   NLG+  +   LF QM      P+ +T+ +++  LC     K  ++    R+
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLC-----KEGMILEARRV 303

Query: 120 LEM----GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------RDVC 162
            EM    G+     T+ +L+  Y     ++ A+ +   M  G+                C
Sbjct: 304 FEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMV-GKGFAPSVRVYNILINGHC 362

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--------PNSR 214
           K  R  + +   SE    D   D V    L      +  P +  K F         P+S 
Sbjct: 363 KSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSI 422

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y+ L+ G    G + +  R+L AM   +++   P    Y  ++  +   G ++ AR++ 
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAM---QESKIEPHICIYNILIQGMCNFGKLEAARELF 479

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
           + +   G+  + +TY +++ G  ++   ++A E+ R+M  +  + P+  +YN+ I GF+ 
Sbjct: 480 SNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCL-PNSCTYNVAIQGFLR 538

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLM 364
             D + A+    EM  RG +    ++  L+
Sbjct: 539 NGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 19/203 (9%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS--QPKLAN 377
           P VV +N L+   +     +  ++   +M    I P   + T L+     S+      A 
Sbjct: 67  PPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAF 126

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
               +M +   ++   V +  L+ G C    + +A ++ + + + GF P++ TY ++  G
Sbjct: 127 SALGKMFK-LGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKG 185

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +        AL L K+++E+                  KPD    + + D   +     +
Sbjct: 186 LCKIGHTTNALQLLKKMEEK----------------GCKPDVVAYNTVIDSLCKDRRANE 229

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           A+   + M + GIPPN   Y  I
Sbjct: 230 AMYFFSEMVDQGIPPNVVTYSSI 252


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 225/462 (48%), Gaps = 47/462 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M  +G+ P     + +++ +A +GD DG ++ ++             DP++V+       
Sbjct: 16  MKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG---------CDPNVVT------- 59

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y A++ A A   K ++ ++L ++M E G  P+++TYNV++    + S       V++++
Sbjct: 60  -YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +E G    + TF SLV  +   G+++ A  ++  M      V K +R  ++  YS+  +G
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM------VAKGMRP-NVVTYSALIDG 171

Query: 180 DDDDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                      EV E++  + + P             ++  Y+ L+ G     ++ +  +
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTP-------------DAFTYSALIHGLCKADKIEEAEQ 218

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ML   RR   +   PD V Y++++ A  K+G +  A++ L EM +     + +TYN ++ 
Sbjct: 219 ML---RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 275

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+  +I +A+ +L +M +   + PDVV+Y+ +I+G    D    A    + M   G  
Sbjct: 276 GLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN 335

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YTT++       + + A  +   M R      ++V +  L+ G C+   V+EA+R
Sbjct: 336 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR-AGCAPNVVTYTTLISGLCKARKVDEAER 394

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           ++E M+  G  PN+ TY ++ NG+ ++ +  EA  L + +K+
Sbjct: 395 VMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 436



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 129/250 (51%), Gaps = 5/250 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   YT L+  +    ++ + +++L  MR   +    P+ VTY  +V AL K   +  A
Sbjct: 55  PNVVTYTALIAAFARAKKLEEAMKLLEEMR---ERGCPPNLVTYNVLVDALCKLSMVGAA 111

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           + V+ +M   G   N +T+N L+ G+C++  +D A++LL  M     + P+VV+Y+ LID
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG-MRPNVVTYSALID 170

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A     EM+A G+ P   +Y+ L+     + + + A ++   M       
Sbjct: 171 GLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM-AGSGCT 229

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+V ++ ++  +C+ G + EA++ ++ M++    P+V TY ++ +G+    K  EA ++
Sbjct: 230 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVI 289

Query: 451 WKEIKERCEV 460
             +++E  +V
Sbjct: 290 LDQMQESGDV 299



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 52/289 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDT 58
           M  SG  P V  +S+++     SG        KL +    ++ +RK           PD 
Sbjct: 223 MAGSGCTPDVVVYSSIIHAFCKSG--------KLLEAQKTLQEMRK-------QRKSPDV 267

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFG-AKPDVLTYNVMIK-LCARASRKHLLV--- 113
             YN V++    LGK  +   + DQM E G   PDV+TY+ +I  LC    +  +LV   
Sbjct: 268 VTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLC----KSDMLVEAQ 323

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L+R+ + G    + T+ +++      G LE AE ++Q M+   R  C      ++  Y
Sbjct: 324 KLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMK---RAGCAP----NVVTY 376

Query: 174 SSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++   G       D+ + V E++  N+  P            PN   Y T++ G    GR
Sbjct: 377 TTLISGLCKARKVDEAERVMEEM-RNAGCP------------PNLVTYNTMVNGLCVSGR 423

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           + +  +++  M+      S PD  TY T+V+AL+ +  +  A Q+L +M
Sbjct: 424 IKEAQQLVQRMKDGRAECS-PDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 49/216 (22%)

Query: 337 DSAGALTFFNEMRARGIA--------------------------------PTKISYTTLM 364
           D   AL    EM++ G A                                P  ++YT L+
Sbjct: 5   DLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALI 64

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            AFA + + + A K+ +EM R+     ++V +N+LV+  C++ +V  A+ ++++M E GF
Sbjct: 65  AAFARAKKLEEAMKLLEEM-RERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF 123

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            PNV T+ SL +G        +A  L             G+     + P +     L+D 
Sbjct: 124 APNVMTFNSLVDGFCKRGNVDDARKLL------------GIMVAKGMRPNVVTYSALIDG 171

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L     ++  F +A E++  M+  G+ P+   Y  +
Sbjct: 172 LC----KSQKFLEAKEVLEEMKASGVTPDAFTYSAL 203


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/516 (24%), Positives = 234/516 (45%), Gaps = 51/516 (9%)

Query: 16  VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDP-DIVSDS------KPDTAAYNAVLNAC 68
           +V  +   G +     V+ F     R+R+F D  D+V +       + DTA YN +LN  
Sbjct: 111 LVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVL 170

Query: 69  ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
           A   + K    ++++M + G +PDV+T N +IK   RA +    V +LE +    +    
Sbjct: 171 AEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDE 230

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF 188
           TTF +L+  ++  G +E A  +   M E      ++   + +  Y     G  +D     
Sbjct: 231 TTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCK--MGRVEDALGYI 288

Query: 189 EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
           +K + +              F P+   Y T +      G VS  ++++  M ++      
Sbjct: 289 QKEIADG-------------FEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQE---GHD 332

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  TY TV++ L K G +D A+ ++ +M   G   +  T+N L+   C Q ++++A +L
Sbjct: 333 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDL 392

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
            RE+     + PDV ++NILI+    + D    +  F EM++ G AP +++Y  L+    
Sbjct: 393 ARELTVKG-LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILID--H 449

Query: 369 LSSQPKLANK--VFDEMLRD--PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           L S  KL N   +  EM  +  PR     V +N +++  C+   +EEA+ + ++M  +G 
Sbjct: 450 LCSMGKLVNALDLLKEMESNGCPR---STVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI 506

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
             +  T+ +L +G+  A++  +A  L +++       KEG          L+P     ++
Sbjct: 507 SRSAVTFNTLIDGLCKAKRIDDATELIEQM------VKEG----------LQPSNITYNS 550

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +     +    +KA +I+  M  +G   +   Y  +
Sbjct: 551 ILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTL 586



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 171/404 (42%), Gaps = 36/404 (8%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           +I    +PD   YN  ++     G     L++ D M + G  PDV TYN +I   ++   
Sbjct: 291 EIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 350

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 ++ ++++ G     TTF +L+ A      LE              +   + REL
Sbjct: 351 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLE--------------EALDLAREL 396

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
            ++  S          D     +L N++    +P L  + F        AP+   Y  L+
Sbjct: 397 TVKGLSP---------DVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILI 447

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
               + G++ + + +L  M   E N      VTY T++ AL K   ++ A +V  +M   
Sbjct: 448 DHLCSMGKLVNALDLLKEM---ESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAH 504

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  + +T+N L+ G C+  +ID A EL+ +M  +  ++P  ++YN ++  +    D   
Sbjct: 505 GISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG-LQPSNITYNSILTHYCKQGDLKK 563

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A      M A G     ++Y TL+     + + ++A K+   M R   ++    A+N ++
Sbjct: 564 AADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGM-RIKGIRPTPKAYNPVI 622

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           +   R   + +A  +   M E G  P+  TY  +  G+     P
Sbjct: 623 QSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGP 666



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 196/479 (40%), Gaps = 104/479 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVV------KR 41
           ML+ G+ P V  ++TV++ L+ +G             D G +     F+ ++       R
Sbjct: 326 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNR 385

Query: 42  VRKFSDPD---IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           + +  D      V    PD   +N ++NA   +G P   ++LF++M   G  PD +TYN+
Sbjct: 386 LEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNI 445

Query: 99  MI-KLCARASRKHLLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +I  LC+       LV  L+ + EM    C     T+ +++ A                 
Sbjct: 446 LIDHLCSMGK----LVNALDLLKEMESNGCPRSTVTYNTIIDA----------------- 484

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
                 +CK +R               ++ +EVF+++  + I+ S+              
Sbjct: 485 ------LCKQMR--------------IEEAEEVFDQMDAHGISRSAVT------------ 512

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            + TL+ G     R+ D   ++  M ++      P ++TY ++++   K G + +A  +L
Sbjct: 513 -FNTLIDGLCKAKRIDDATELIEQMVKE---GLQPSNITYNSILTHYCKQGDLKKAADIL 568

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             MT  G   + +TY  L+ G C+  +   A +LLR M     I P   +YN +I     
Sbjct: 569 ETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKG-IRPTPKAYNPVIQSLFR 627

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP-KLANKVFDEMLRDPRVKVDI 393
            ++   AL+ F EM   G  P  ++Y  + +       P K A     EM+    +  + 
Sbjct: 628 RNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMP-EF 686

Query: 394 VAWNMLVEGYCRMG----LVEEAKRIIER--------------MKENGFYPNVATYGSL 434
            ++ ML EG   +G    L+   + IIE+              +K   +Y  +AT+G L
Sbjct: 687 SSFRMLAEGLLNLGMDDYLISAIELIIEKAKFRESDVSAIRGYLKIRKYYDALATFGRL 745


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 195/463 (42%), Gaps = 71/463 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    +   L + A   +    + L +QM  FG   +V + NV+I    R S     V 
Sbjct: 93  RPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVS 152

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V+ ++ ++GI     TF +L+                         +C            
Sbjct: 153 VMGKMFKLGIQPDAITFNTLING-----------------------LC------------ 177

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             NEG   +   +F +++ +                PN   Y T++ G    G     VR
Sbjct: 178 --NEGKIKEAVGLFNEMVWSG-------------HEPNVISYNTVINGLCKNGNTIMAVR 222

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +    R+ E N   P+ VTY T++ +L K   ++ A + L+EM   G+P + +TYN +L 
Sbjct: 223 VF---RKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILH 279

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   Q+++A  L +EM     + PD V++NIL+DG       + A      M  +G  
Sbjct: 280 GFCSLGQLNEATRLFKEMV-GRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAE 338

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   +Y  LM  + L +Q   A KV   M+       ++ ++N+L+ GYC+   + EAKR
Sbjct: 339 PNAYTYNALMDGYCLHNQMDEAIKVLGIMI-GKGCAPNLSSYNILINGYCKSKRMNEAKR 397

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M E    P+  TY +L  G+    +P EAL L+KE+              S L P 
Sbjct: 398 LLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEM------------CSSGLLPD 445

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           L     LLD       +     +AL+++  M E  I PN   Y
Sbjct: 446 LMAYSILLDGFC----KHGHLDEALKLLKEMHERRIKPNIILY 484



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 219/455 (48%), Gaps = 35/455 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M + G  P    ++T+++ L    ++G + E+V LF+ +V            S  +P+  
Sbjct: 157 MFKLGIQPDAITFNTLINGLC---NEGKIKEAVGLFNEMVW-----------SGHEPNVI 202

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           +YN V+N     G     +++F +M +   KP+V+TYN +I    +    +  V  L  +
Sbjct: 203 SYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEM 262

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++ GI   + T+ +++  +   G L  A  + + M  GR  +   +    L D   + EG
Sbjct: 263 VDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMV-GRNVMPDTVTFNILVDGLCK-EG 320

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              +   V E              +  K   PN+  Y  LM GY    ++ + +++LG M
Sbjct: 321 MVSEARCVSE-------------TMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIM 367

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             +      P+  +Y  +++   K+  M+ A+++L+EM+   +  + +TY+ L++G CQ 
Sbjct: 368 IGK---GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQV 424

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +  +A  L +EM     + PD+++Y+IL+DGF        AL    EM  R I P  I 
Sbjct: 425 GRPREALNLFKEMCSSGLL-PDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIIL 483

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT L++   ++ + ++A ++F ++  D  ++ DI  +N++++G  + GL +EA     +M
Sbjct: 484 YTILIRGMFIAGKLEVAKELFSKLSADG-IRPDIWTYNVMIKGLLKEGLSDEAYEFFRKM 542

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++GF P+  +Y  +  G    +    A+ L  E+
Sbjct: 543 EDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM 577



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/462 (24%), Positives = 215/462 (46%), Gaps = 38/462 (8%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLER 118
           + N ++N    L      + +  +M + G +PD +T+N +I  LC     K   V +   
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKE-AVGLFNE 191

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           ++  G    + ++ +++      G+  +A  + + M + R        + ++  Y++   
Sbjct: 192 MVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNR-------GKPNVVTYNT--- 241

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                D    ++L+  ++   SE  ++ +   P+   Y T++ G+ + G++++  R+   
Sbjct: 242 ---IIDSLCKDRLVNEAVEFLSE--MVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKE 296

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      PD VT+  +V  L K G +  AR V   MT  G   N  TYN L+ GYC 
Sbjct: 297 MVGRN---VMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCL 353

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             Q+D+A ++L  M       P++ SYNILI+G+        A    +EM  + + P  +
Sbjct: 354 HNQMDEAIKVLGIMIGKG-CAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTV 412

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y+TLM+      +P+ A  +F EM     +  D++A+++L++G+C+ G ++EA ++++ 
Sbjct: 413 TYSTLMQGLCQVGRPREALNLFKEMCSSGLLP-DLMAYSILLDGFCKHGHLDEALKLLKE 471

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M E    PN+  Y  L  G+ +A K    L + KE+  +       ++AD      ++PD
Sbjct: 472 MHERRIKPNIILYTILIRGMFIAGK----LEVAKELFSK-------LSADG-----IRPD 515

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               + +    ++     +A E    ME+ G  P+   Y  I
Sbjct: 516 IWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVI 557



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 176/409 (43%), Gaps = 52/409 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLF------------------------D 36
           M+ SG+ P+V +++TV++ L  +G+   + +V++F                        D
Sbjct: 192 MVWSGHEPNVISYNTVINGLCKNGN--TIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKD 249

Query: 37  VVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
            +V    +F    +     PD   YN +L+   +LG+  +  +LF +M      PD +T+
Sbjct: 250 RLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTF 309

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           N+++    +         V E + E G      T+ +L+  Y     ++ A  ++  M  
Sbjct: 310 NILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMI- 368

Query: 157 GR-------------RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP- 202
           G+                CK  R  + +   SE    +   D V    L   +     P 
Sbjct: 369 GKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPR 428

Query: 203 -------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                   +      P+   Y+ L+ G+   G + + +++L  M  +      P+ + YT
Sbjct: 429 EALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERR---IKPNIILYT 485

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            ++  +  AG ++ A+++ ++++  G+  +  TYN+++KG  ++   D+A E  R+M DD
Sbjct: 486 ILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDD 545

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
             + PD  SYN++I GF+   DS+ A+   +EM  +  +    ++  L+
Sbjct: 546 GFL-PDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLL 593



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  V +   + ++ K      A  +  +M   GV  N  + N+L+   C+   +D A  +
Sbjct: 94  PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSV 153

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           + +M     I+PD +++N LI+G         A+  FNEM   G  P  ISY T++    
Sbjct: 154 MGKMFK-LGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLC 212

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +    +A +VF +M ++ R K ++V +N +++  C+  LV EA   +  M + G  P+V
Sbjct: 213 KNGNTIMAVRVFRKMEQN-RGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDV 271

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY ++ +G     +  EA  L+KE+  R                 + PD    + L D 
Sbjct: 272 VTYNTILHGFCSLGQLNEATRLFKEMVGR----------------NVMPDTVTFNILVDG 315

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +A  +   M E G  PN   Y  +
Sbjct: 316 LCKEGMVSEARCVSETMTEKGAEPNAYTYNAL 347


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 228/472 (48%), Gaps = 39/472 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD    N ++N  + LG  K    +F ++ + G  PD +T+ ++IK        H  ++
Sbjct: 90  KPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALY 149

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             ++++  G  L   ++ +L+      G+ + A   VQ +R  R D  K++R  ++  YS
Sbjct: 150 FHDKVVAQGFQLDQVSYGTLINGLCRVGETKAA---VQLLR--RVDG-KLVRP-NVVMYS 202

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +        D    +KL+ ++ +   E  ++ K  +P+   Y++L+ G+   G++   V 
Sbjct: 203 TI------IDSMCKDKLVNDAFDLYCE--MVSKRISPDVVTYSSLISGFCVVGKLKYAVD 254

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +    R   DN  +P+  T++ ++    K G +  A+ VLA M +  V  + +TYN L+ 
Sbjct: 255 LFN--RMISDNI-NPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMD 311

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC   Q++KAK L   MA    + PDV SY+I+I+GF  I     A+  F EM  + I 
Sbjct: 312 GYCLVKQVNKAKSLFNVMAQRG-VTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIF 370

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++Y +L+     S +   A ++ DEM  D     +I+ +N +++  C+   V++A  
Sbjct: 371 PNVVTYNSLVDGLCKSGRTSCALELVDEM-HDRGQPSNIITYNSILDAICKNNHVDKAIV 429

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++ ++KE G  P++ TY  L NG+    +  +A  +++++                L   
Sbjct: 430 LLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDL----------------LVKG 473

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
             P+     +L +      FF + L +++ M+++G  PN   Y+   + +HS
Sbjct: 474 YSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYE---ILIHS 522



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 154/342 (45%), Gaps = 62/342 (18%)

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   ++ E N   PD +T   +++   + G +  +  V A++ + G   + +T+ IL+KG
Sbjct: 78  LSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKG 137

Query: 296 YC-----------------QQLQIDK------------------AKELLREMADDAKIEP 320
            C                 Q  Q+D+                  A +LLR + D   + P
Sbjct: 138 LCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRV-DGKLVRP 196

Query: 321 DVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           +VV Y+ +ID      L++D   A   + EM ++ I+P  ++Y++L+  F +  + K A 
Sbjct: 197 NVVMYSTIIDSMCKDKLVND---AFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAV 253

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +F+ M+ D  +  ++  +++L++G+C+ G V EAK ++  M +     +V TY SL +G
Sbjct: 254 DLFNRMISD-NINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDG 312

Query: 438 ISLARKPGEALLLWKEIKER----------------CEVK--KEGVNADSDLP-PPLKPD 478
             L ++  +A  L+  + +R                C++K   E +    ++    + P+
Sbjct: 313 YCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPN 372

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               ++L D   ++     ALE+V  M + G P N   Y  I
Sbjct: 373 VVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSI 414



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 159/383 (41%), Gaps = 71/383 (18%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  +ST++  +     D  V     FD+  + V K   PD+V+        Y+++++ 
Sbjct: 196 PNVVMYSTIIDSMCK---DKLVNDA--FDLYCEMVSKRISPDVVT--------YSSLISG 242

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
              +GK K  + LF++M      P+V T++++I    +  +      VL  +++  + L 
Sbjct: 243 FCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLD 302

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD-----D 182
           + T+ SL+  Y     +  A+++   M   +R V       D+  YS    G       D
Sbjct: 303 VVTYNSLMDGYCLVKQVNKAKSLFNVM--AQRGVTP-----DVWSYSIMINGFCKIKMVD 355

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM--R 240
           +  ++FE++    I              PN   Y +L+ G    GR S  + ++  M  R
Sbjct: 356 EAMKLFEEMHCKQI-------------FPNVVTYNSLVDGLCKSGRTSCALELVDEMHDR 402

Query: 241 RQEDN------------------------------ASHPDHVTYTTVVSALVKAGSMDRA 270
            Q  N                                 PD  TYT +++ L K G +D A
Sbjct: 403 GQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDA 462

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           ++V  ++   G   N  TY  L+ G+C +   D+   +L +M D+  I P+ ++Y ILI 
Sbjct: 463 QKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCI-PNAITYEILIH 521

Query: 331 GFILIDDSAGALTFFNEMRARGI 353
                D++  A     EM ARG+
Sbjct: 522 SLFEKDENDKAEKLLREMIARGL 544



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 66/282 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P V ++S +++             +K+ D  +K   +     I     P+   
Sbjct: 329 MAQRGVTPDVWSYSIMINGFC---------KIKMVDEAMKLFEEMHCKQIF----PNVVT 375

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G+    L+L D+MH+ G   +++TYN ++    + +     + +L +I 
Sbjct: 376 YNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIK 435

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E GI   + T+  L+                         +CK+              G 
Sbjct: 436 EKGIQPDIFTYTVLING-----------------------LCKV--------------GR 458

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD  +VFE LL              K ++PN   YT+L+ G+ N+G   + + ML  M+
Sbjct: 459 LDDAQKVFEDLLV-------------KGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMK 505

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              DN   P+ +TY  ++ +L +    D+A ++L EM   G+
Sbjct: 506 ---DNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 223/474 (47%), Gaps = 38/474 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP+    N ++N    LG       +F ++ + G  PD +T+  +IK LC +   +   +
Sbjct: 117 KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFL 176

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  ++++ +G      ++ +L+      G+   A  ++Q + +G      ++    + D 
Sbjct: 177 F-HDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV-DGNLVQPNVVMYNTIIDS 234

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +             KL+  + +  SE  ++ K  +P+   Y+ L+ G+   G+++D +
Sbjct: 235 MCK------------VKLVNEAFDLFSE--MISKGISPDVVTYSALISGFCILGKLNDAI 280

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +      PD  T+  +V+A  K G M   + V   M + G+  N +TYN L+
Sbjct: 281 DLFNKMILEN---IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GYC   +++KAK +   MA    + PD+ SY+I+I+GF  I     A+  F EM  + I
Sbjct: 338 DGYCLVKEVNKAKSIFNTMAQGG-VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++Y++L+   + S +   A ++ D+M  D  V   I  +N +++  C++  V++A 
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQM-HDRGVPPTIRTYNSILDALCKIHQVDKAI 455

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            ++ ++K+ G  PN+ TY  L  G+  + K  +A    +++ E   VK   +N D+    
Sbjct: 456 ALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDA----RKVFEGLLVKGHNLNVDT---- 507

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
                      +   CV    F +AL +++ ME++G  P+   Y+ I + +  +
Sbjct: 508 -------YTIMIQGFCVE-GLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKK 553



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 176/412 (42%), Gaps = 75/412 (18%)

Query: 167 ELDLEDYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           +++   YSS      +  D DD   +F +LL  +  P +        F  N +I  +L+K
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPA--------FEFN-KILGSLVK 97

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
                 +   TV  L   ++ E     P+ V    +++   + G +  A  V A++ ++G
Sbjct: 98  S-----KHYHTVLYLS--QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMG 150

Query: 282 VPANRITYNILLKGYCQQLQIDKAKEL--------------------------------- 308
              + IT+  L+KG C + QI +A                                    
Sbjct: 151 YVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAAL 210

Query: 309 -LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
            L +  D   ++P+VV YN +ID    +     A   F+EM ++GI+P  ++Y+ L+  F
Sbjct: 211 DLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGF 270

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            +  +   A  +F++M+ +  +K D+  +N+LV  +C+ G ++E K + + M + G  PN
Sbjct: 271 CILGKLNDAIDLFNKMILE-NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329

Query: 428 VATYGSLANGISLARKPGEALLLWKE----------------IKERCEVKK--EGVNADS 469
             TY SL +G  L ++  +A  ++                  I   C++KK  E +N   
Sbjct: 330 FVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFK 389

Query: 470 DLP-PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++    + PD     +L D   ++     AL++V  M + G+PP    Y  I
Sbjct: 390 EMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSI 441



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 179/429 (41%), Gaps = 113/429 (26%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKL----FDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           P+V  ++T++  +           VKL    FD+  + + K   PD+V+        Y+A
Sbjct: 223 PNVVMYNTIIDSMC---------KVKLVNEAFDLFSEMISKGISPDVVT--------YSA 265

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++    LGK    + LF++M     KPDV T+N+++    +  +      V + +++ G
Sbjct: 266 LISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQG 325

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I     T+ SL+  Y    ++  A++I   M +G                          
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG-------------------------- 359

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                       +NP  +              Y+ ++ G+    +  + + +   M R+ 
Sbjct: 360 -----------GVNPDIQS-------------YSIMINGFCKIKKFDEAMNLFKEMHRKN 395

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                PD VTY++++  L K+G +  A Q++ +M   GVP    TYN +L   C+  Q+D
Sbjct: 396 ---IIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVD 452

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           KA  LL ++ D   I+P++ +Y+ILI G                                
Sbjct: 453 KAIALLTKLKDKG-IQPNMYTYSILIKG-------------------------------- 479

Query: 364 MKAFALSSQPKLANKVFDEML-RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
                 S + + A KVF+ +L +   + VD   + ++++G+C  GL  EA  ++ +M++N
Sbjct: 480 ---LCQSGKLEDARKVFEGLLVKGHNLNVD--TYTIMIQGFCVEGLFNEALALLSKMEDN 534

Query: 423 GFYPNVATY 431
           G  P+  TY
Sbjct: 535 GCIPDAKTY 543



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 187/428 (43%), Gaps = 41/428 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  +S ++S     G     +++ LF+ +           I+ + KPD   
Sbjct: 251 MISKGISPDVVTYSALISGFCILGKLN--DAIDLFNKM-----------ILENIKPDVYT 297

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++NA    GK K+   +FD M + G KP+ +TYN ++         +    +   + 
Sbjct: 298 FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMA 357

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+   + ++  ++  +      + A  + + M   R+++       D+  YSS  +G 
Sbjct: 358 QGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH--RKNIIP-----DVVTYSSLIDGL 410

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                  +   L + ++    PP +        R Y +++       +V   + +L  ++
Sbjct: 411 SKSGRISYALQLVDQMHDRGVPPTI--------RTYNSILDALCKIHQVDKAIALLTKLK 462

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              D    P+  TY+ ++  L ++G ++ AR+V   +   G   N  TY I+++G+C + 
Sbjct: 463 ---DKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEG 519

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS- 359
             ++A  LL +M D+  I PD  +Y I+I      D++  A     EM ARG+ P +I+ 
Sbjct: 520 LFNEALALLSKMEDNGCI-PDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIAI 578

Query: 360 YTTLMKAFALSSQPKLANKV----FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           +    K + +SS+PK   +     F  M     V  D + WN +V  Y  + L   AK  
Sbjct: 579 WFQKKKEYDVSSEPKTLTEQSVPKFKAMF--GLVICDGMEWNGVVHNY--IPLFGFAKSE 634

Query: 416 IERMKENG 423
              M+ NG
Sbjct: 635 WSGMEYNG 642



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 123/297 (41%), Gaps = 25/297 (8%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           ++S  + ++Y++  +       +D A  +   + R         +N +L    +      
Sbjct: 44  SSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHT 103

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
              L ++M +   I+P++V+ NILI+ F  +     A + F ++   G  P  I++TTL+
Sbjct: 104 VLYLSQKM-EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLI 162

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           K   L  Q + A  +F + +       D +++  L+ G C++G    A  +++R+  N  
Sbjct: 163 KGLCLKGQIQQA-FLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLV 221

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CEVKKEGVNAD 468
            PNV  Y ++ + +   +   EA  L+ E+  +                C + K  +N  
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGK--LNDA 279

Query: 469 SDL-----PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            DL        +KPD    + L +   +    ++   +   M + GI PN   Y  +
Sbjct: 280 IDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336


>gi|255567544|ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535935|gb|EEF37594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 787

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 152/611 (24%), Positives = 263/611 (43%), Gaps = 84/611 (13%)

Query: 8   PHVKAWSTVVSRLAASGDDG------PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           P V AWS +++ ++ +           +E   LF       RK  +  +++  KP+T + 
Sbjct: 200 PPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGKVDPRKKCNATLIA-MKPNTTSV 258

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N  L  C   G  +K  QL D +   G K +      M  +  R  R+  L+  L+R ++
Sbjct: 259 NIALAGCLVFGTTRKAEQLLDLIPRVGIKVNATLLITMAHIYERNGRRQELM-KLQRHID 317

Query: 122 MGITLCMTTFQS----LVAAYVGFGDLEIAETIVQAM----REGRRDVC--KIIRELDLE 171
              ++    ++     L++ ++ FGDL+ A  +V  M    +E R  +   K + + D +
Sbjct: 318 EAHSISDIQYRQFYNCLLSCHLKFGDLDSASDMVLKMLWKAKEARNSLAAAKFVYQADSK 377

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSIN---PSSEP-------------------------P 203
               +   D  +  E      P+ +N   P+  P                          
Sbjct: 378 SSHEQISPDSVNHRE------PDGLNKSRPNRTPMISHGEFLKDRDFLKLDAEAKGLLDS 431

Query: 204 LLPK-------------TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           LL K                P  ++Y  L+K ++  G+  +    L    + ED+ S  D
Sbjct: 432 LLAKLQTQVELITTDRGILQPTEKVYVKLVKAFLESGKTKELAAFLYKAEK-EDSPSSND 490

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
                 V+++ +    +D+A  +L EM   GV  +   Y  LLK YC+  +  + K LLR
Sbjct: 491 DSPLVHVINSCISLDWLDQAHDLLDEMRVAGVRMSSSVYASLLKAYCKANRAGEVKALLR 550

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTTLMKAFAL 369
           + A  A I+ D   Y  LI   +L +D+ GAL  F EM+   I       +  L+K  A 
Sbjct: 551 D-ARKAGIQLDSSCYGALIKSRVLEEDTQGALHLFKEMKDAKIPRAGNQEFEMLVKGCAD 609

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             +  L  K+  E+     V   +  WN ++  +C+  L+++A++ +++M+  G  PN  
Sbjct: 610 DGEAGLLAKLLREIREGQTVDSGVHDWNYVIHFFCKKRLMQDAEKALKKMRSLGHAPNAQ 669

Query: 430 TYGSLANGIS-LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
           T+ S+  G + +  K  E   LW E+K                   +K D+ELLD++   
Sbjct: 670 TFHSMVTGYAAIGGKYVEVTELWGEMKSIASA------------TSMKFDQELLDSVLYT 717

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKR- 547
            VR  FF +A E+VA ME+  +  +K KY+ ++++ H  ++  K  S   Q   + RKR 
Sbjct: 718 FVRGGFFSRANEVVAMMEKVEMFIDKYKYRTLFLKYHKTLYKGK--SPKIQTEAQARKRE 775

Query: 548 AAEAFKFWLGL 558
           AA +FK W+GL
Sbjct: 776 AALSFKKWVGL 786


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 219/473 (46%), Gaps = 37/473 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD    N++LN   +  +    + L  QM E G +PD  T+N +I    R +R    V 
Sbjct: 148 EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVA 207

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R++  G    + T+  +V      GD+++A ++++ M +G+ +   +I    ++   
Sbjct: 208 LVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALC 267

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +    +D             ++N  +E  +  K   PN   Y +L++   N GR SD  R
Sbjct: 268 NYKNVND-------------ALNLFTE--MDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT++ ++ A VK G +  A ++  EM +  +  +  TY+ L+ 
Sbjct: 313 LLSDMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++D+AK +  E+       P+VV+YN LI GF         +  F EM  RG+ 
Sbjct: 370 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLV 428

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++YTTL+  F  + +   A  VF +M+ D  V  DI+ +++L++G C  G VE A  
Sbjct: 429 GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG-VLPDIMTYSILLDGLCNNGKVETALV 487

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           + E ++ +   P++ TY  +  G+  A K  +   L+      C +  +GV         
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF------CSLSLKGV--------- 532

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
            KP+      +     R     +A  +   M+E G  P+   Y  + +  H R
Sbjct: 533 -KPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL-IRAHLR 583



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 177/405 (43%), Gaps = 61/405 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L+A A + K    + L +QM   G   ++ TY+++I    R S+  L + V
Sbjct: 79  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  +     +  A ++V  M E                   
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE------------------- 179

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P+S  + TL+ G     R S+ V +
Sbjct: 180 -------------------------------MGYQPDSFTFNTLIHGLFRHNRASEAVAL 208

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M  +      PD VTY  VV+ L K G +D A  +L +M +  +    + YN ++  
Sbjct: 209 VDRMVVK---GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C    ++ A  L  EM D+  I P+VV+YN LI         + A    ++M  R I P
Sbjct: 266 LCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             ++++ L+ AF    +   A K++DEM++   DP    DI  ++ L+ G+C    ++EA
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEA 380

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           K + E M     +PNV TY +L  G   A++  E + L++E+ +R
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQR 425



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 190/441 (43%), Gaps = 43/441 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +  +  VV+ L   GD          D+ +  ++K     I    +P    
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGD---------IDLALSLLKKMEQGKI----EPGVVI 258

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++A  N       L LF +M   G +P+V+TYN +I+      R      +L  ++
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G L  AE +   M +   D        D+  YSS   G 
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-------DIFTYSSLINGF 371

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D+   +FE              ++ K   PN   Y TL+KG+    RV + + +
Sbjct: 372 CMHDRLDEAKHMFE-------------LMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         + VTYTT++    +A   D A+ V  +M   GV  + +TY+ILL G
Sbjct: 419 F---REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDG 475

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +++ A  +  E    +K+EPD+ +YNI+I+G             F  +  +G+ P
Sbjct: 476 LCNNGKVETALVVF-EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YTT+M  F      + A+ +F EM  +  +  D   +N L+  + R G    +  +
Sbjct: 535 NVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP-DSGTYNTLIRAHLRDGDKAASAEL 593

Query: 416 IERMKENGFYPNVATYGSLAN 436
           I  M+   F  + +T G + N
Sbjct: 594 IREMRSCRFVGDASTIGLVTN 614



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 196/435 (45%), Gaps = 35/435 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  GY P    ++T++  L     +   E+V L D +V           V   +PD   
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRH--NRASEAVALVDRMV-----------VKGCQPDLVT 223

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y  V+N     G     L L  +M +   +P V+ YN +I  LC   +    L    E +
Sbjct: 224 YGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE-M 282

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              GI   + T+ SL+     +G    A  ++  M E R+    ++    L D +   EG
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE-RKINPNVVTFSALID-AFVKEG 340

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              + ++++++++  SI+             P+   Y++L+ G+    R+ +   M   M
Sbjct: 341 KLVEAEKLYDEMIKRSID-------------PDIFTYSSLINGFCMHDRLDEAKHMFELM 387

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             ++     P+ VTY T++    KA  +D   ++  EM++ G+  N +TY  L+ G+ Q 
Sbjct: 388 ISKD---CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 444

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            + D A+ + ++M  D  + PD+++Y+IL+DG         AL  F  ++   + P   +
Sbjct: 445 RECDNAQIVFKQMVSDG-VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYT 503

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  +++    + + +    +F   L    VK ++V +  ++ G+CR GL EEA  +   M
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCS-LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562

Query: 420 KENGFYPNVATYGSL 434
           KE G  P+  TY +L
Sbjct: 563 KEEGPLPDSGTYNTL 577



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 117/234 (50%), Gaps = 5/234 (2%)

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
           +N+ ++ D V + G M +       P  V ++ ++SA+ K    D    +  +M  +G+ 
Sbjct: 57  LNDLKLDDAVNLFGDMVKSR---PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGIS 113

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N  TY+IL+  +C++ Q+  A  +L +M      EPD+V+ N L++GF   +  + A++
Sbjct: 114 HNLYTYSILINCFCRRSQLSLALAVLAKMM-KLGYEPDIVTLNSLLNGFCHGNRISDAVS 172

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
              +M   G  P   ++ TL+      ++   A  + D M+     + D+V + ++V G 
Sbjct: 173 LVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG-CQPDLVTYGIVVNGL 231

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           C+ G ++ A  ++++M++    P V  Y ++ + +   +   +AL L+ E+  +
Sbjct: 232 CKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 22/305 (7%)

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D V  LG  + Q    SH +  TY+ +++   +   +  A  VLA+M ++G   + +T N
Sbjct: 98  DLVISLGE-QMQNLGISH-NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLN 155

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            LL G+C   +I  A  L+ +M  +   +PD  ++N LI G    + ++ A+   + M  
Sbjct: 156 SLLNGFCHGNRISDAVSLVGQMV-EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVV 214

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P  ++Y  ++          LA  +  +M    +++  +V +N +++  C    V 
Sbjct: 215 KGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM-EQGKIEPGVVIYNTIIDALCNYKNVN 273

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A  +   M   G  PNV TY SL   +    +  +A  L  ++ ER             
Sbjct: 274 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER------------- 320

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRM 528
               + P+     AL D  V+     +A ++   M +  I P+   Y  +     MH R+
Sbjct: 321 ---KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377

Query: 529 FTSKH 533
             +KH
Sbjct: 378 DEAKH 382


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 224/479 (46%), Gaps = 40/479 (8%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            P    +  VL A A + K    + LF +M   G   D+ ++ ++I    R SR  L + +
Sbjct: 613  PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALAL 672

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            L +++++G    + T  SL+  +      + A ++V +M E       +  E ++  Y++
Sbjct: 673  LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAE-------LGLEPNVVIYNT 725

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               G   + D      L N++       +  K    ++  Y TL+ G  N GR +D  R+
Sbjct: 726  VINGLCKNRD------LNNALEIFY--GMEKKGIVADAVTYNTLISGLCNSGRWTDAARL 777

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            L  M +++ +   P+ + +T ++   VK G++  A+ +  EM R  V  N +TYN L+ G
Sbjct: 778  LRDMVKRKID---PNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLING 834

Query: 296  YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            +C Q ++  AK +   M       PDVV+YN LI GF         +  F EM  +G+  
Sbjct: 835  FCIQGRLGDAKHMFDLMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVG 893

Query: 356  TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
               +Y TL+  +  + +  +A KVF+ M+ D  V  DIV +N+L++  C  G +E+A  +
Sbjct: 894  DAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVPPDIVTYNILLDCLCNNGKIEKALVM 952

Query: 416  IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            +E +++N    ++ TY  +  G+    K  EA  L++ +       ++GV  D+      
Sbjct: 953  VEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSL------TRKGVKLDAI----- 1001

Query: 476  KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
                  +  ++ +C R    R+A ++   M+E G  P+    ++IY E     +TS  A
Sbjct: 1002 ----AYITMISGLC-RNGLRREADKLCTRMKEDGFMPS----ERIYDETLRDHYTSLSA 1051



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 186/441 (42%), Gaps = 52/441 (11%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + S   P    +  +L A ANL + +  +    QM  FG   D+ ++ ++I    R SR 
Sbjct: 57  VQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRL 116

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
            L + +L +++++G    + TF SL+  +     +  A ++V +M +   +   ++    
Sbjct: 117 SLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYN-T 175

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           L D   +N GD +   E+  ++                  A +   Y TL+ G    G  
Sbjct: 176 LIDCLCKN-GDVNIALELLNEMEKKG------------RLAADLVTYNTLLTGLCYSGEW 222

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
               R+L  M ++  N   PD  T+T ++ A VK G++D A+++  +M +  +  N +TY
Sbjct: 223 RQAARILRDMTKRRIN---PDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTY 279

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L+ G C   ++  AK+    MA      P+VV+YN LI+GF         +  F  M 
Sbjct: 280 NSLINGLCMHGRLYHAKKTFDLMASKGCF-PNVVTYNTLINGFCKSRRVEDGMKLFQRMY 338

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-------------------------- 383
             G+     +Y TL+  +    + ++A  +F  M                          
Sbjct: 339 REGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIG 398

Query: 384 --------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
                   +R     + IVA+N+++ G C+   VEEA  +  R+   G  P+  TY  + 
Sbjct: 399 SAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMI 458

Query: 436 NGISLARKPGEALLLWKEIKE 456
            G+       EA  L++ +KE
Sbjct: 459 LGLCKNGPRREADELFRRMKE 479



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 178/379 (46%), Gaps = 19/379 (5%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L LF +M +    P V+ +  ++   A   R   +++  +++   GI+  + +F  L+  
Sbjct: 50  LDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHC 109

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
           +     L +A +I+  M +   D   +     L  +   N   D                
Sbjct: 110 FCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDA--------------- 154

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
            S    ++   + PN  +Y TL+      G V+  + +L  M ++   A+  D VTY T+
Sbjct: 155 FSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAA--DLVTYNTL 212

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           ++ L  +G   +A ++L +MT+  +  +  T+  L+  + +Q  +D+A+EL ++M   + 
Sbjct: 213 LTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSS- 271

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I P+ V+YN LI+G  +      A   F+ M ++G  P  ++Y TL+  F  S + +   
Sbjct: 272 IGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGM 331

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K+F  M R+  V  D   +N L+ GYC++G +  AK I   M   G  P++ T+  L +G
Sbjct: 332 KLFQRMYREGLVG-DTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHG 390

Query: 438 ISLARKPGEALLLWKEIKE 456
           + +  + G A++ + +++ 
Sbjct: 391 LCVNGEIGSAMVKFNDMRS 409



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 30/266 (11%)

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L  G+   ++ + A +L  EM     + P VV +  L+     +      + F  +M   
Sbjct: 36  LRTGFLHSIRFEDALDLFLEMVQSQPL-PSVVDFTRLLTAIANLRRYETVIYFSQQMELF 94

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGL 408
           GI+    S+T L+  F   S+  LA  +  +M++   DP     IV +  L+ G+C    
Sbjct: 95  GISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDP----SIVTFGSLLHGFCLRNR 150

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           + +A  ++  M ++G+ PNV  Y +L + +        AL L  E++++  +  + V  +
Sbjct: 151 IHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYN 210

Query: 469 SDLPP--------------------PLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
           + L                       + PD     AL D  V+     +A E+   M + 
Sbjct: 211 TLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQS 270

Query: 509 GIPPNKTKYKKIY--VEMHSRMFTSK 532
            I PN   Y  +   + MH R++ +K
Sbjct: 271 SIGPNTVTYNSLINGLCMHGRLYHAK 296



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 97/267 (36%), Gaps = 53/267 (19%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   P+T  YN+++N     G+     + FD M   G  P+V+TYN +I    ++ R   
Sbjct: 270 SSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVED 329

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + + +R+   G+     T+ +L+  Y   G L +A+ I   M       C +       
Sbjct: 330 GMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVS-----CGV------- 377

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                                  P+   +  L+ G    G +  
Sbjct: 378 --------------------------------------TPDIITHCILLHGLCVNGEIGS 399

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            +     MR  E    +   V Y  ++  L KA  ++ A ++   +   GV  +  TY I
Sbjct: 400 AMVKFNDMRSGE---KYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTI 456

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKI 318
           ++ G C+     +A EL R M +D  I
Sbjct: 457 MILGLCKNGPRREADELFRRMKEDGII 483



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 20/188 (10%)

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
           I  DD+ G    F EM      P+ + +T ++ A A  ++  +   +F +M  +  +  D
Sbjct: 594 IKFDDAFG---LFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKM-ENLGISHD 649

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           + ++ +L+  +CR      A  ++ +M + GF P++ T GSL NG     +  EA+ L  
Sbjct: 650 LYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSL-- 707

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                          DS     L+P+  + + + +   +      ALEI   ME+ GI  
Sbjct: 708 --------------VDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVA 753

Query: 513 NKTKYKKI 520
           +   Y  +
Sbjct: 754 DAVTYNTL 761


>gi|356502616|ref|XP_003520114.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g69290-like [Glycine max]
          Length = 624

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 167/343 (48%), Gaps = 15/343 (4%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  ++K Y  +G +     ++   ++ E +    D      +V+A V  G  D+A  +L 
Sbjct: 295 FCEVVKAYFQKGNIKGLASLIVEAQKLEGSDIMIDKSIGYGIVNACVNIGLSDKAHSILD 354

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM  +G       Y  +LK YC++ +  +A +++ E+++   ++ DV +Y+ L++  +  
Sbjct: 355 EMNALGASVGLGVYIPILKAYCKENRTAEATQMVMEISNSG-LQLDVGTYDALVEAAMCA 413

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            D   A + F +MR   I   K SY T+M     + +P+L     DE++ DPR++V    
Sbjct: 414 QDFQSAFSLFRDMRDARIPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVGTHD 473

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           WN ++  +C+ G +E+A+R   RM    F PN  TY S+ NG  LA K    L+LW E+K
Sbjct: 474 WNSIIHAFCKAGRLEDARRTFRRMMFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVK 533

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            +  +         D    +K D  L+DA     V+  FF   +++V    E  +  +K 
Sbjct: 534 RKLSL---------DGQKGIKFDHNLVDAFLYAMVKGGFFDAVMQVVEKAYEMRVFVDKW 584

Query: 516 KYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558
           +YK+ ++E H ++  +K      + R   +  A  AFK W GL
Sbjct: 585 RYKQAFMETHKKLKVAK-----LRKRNFRKMEALIAFKNWAGL 622



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 114/281 (40%), Gaps = 25/281 (8%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           SD   D +    ++NAC N+G   K   + D+M+  GA   +  Y  ++K   + +R   
Sbjct: 324 SDIMIDKSIGYGIVNACVNIGLSDKAHSILDEMNALGASVGLGVYIPILKAYCKENRTAE 383

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR----RDVCKIIRE 167
              ++  I   G+ L + T+ +LV A +   D + A ++ + MR+ R    +     I  
Sbjct: 384 ATQMVMEISNSGLQLDVGTYDALVEAAMCAQDFQSAFSLFRDMRDARIPDLKGSYLTIMT 443

Query: 168 LDLEDYSSE------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-----------FA 210
             +E++  E      +E  +D   EV      + I+   +   L              F 
Sbjct: 444 GLMENHRPELMAAFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMMFLQFE 503

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ----EDNASHPDHVTYTTVVSALVKAGS 266
           PN + Y +++ GY+   +    + +   ++R+           DH      + A+VK G 
Sbjct: 504 PNDQTYLSMINGYVLAEKYFLVLMLWNEVKRKLSLDGQKGIKFDHNLVDAFLYAMVKGGF 563

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            D   QV+ +   + V  ++  Y        ++L++ K ++
Sbjct: 564 FDAVMQVVEKAYEMRVFVDKWRYKQAFMETHKKLKVAKLRK 604


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 182/408 (44%), Gaps = 31/408 (7%)

Query: 56  PDTAAYNAVLNACANLGKP-KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           PD  +YN V+N     G+       LFDQM + G  PDV+TYN +I   ++A        
Sbjct: 200 PDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAV 259

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL R+++ G      T  SL+  Y   G    A  + + M       C+   E D+  Y+
Sbjct: 260 VLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRM-------CRDGVEPDVFTYN 312

Query: 175 SE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +        G   +  ++F+ ++              +   PNS  Y TL+ GY  EG +
Sbjct: 313 TLMGYLCKNGRSMEARKIFDSMVK-------------RGHKPNSATYGTLLHGYATEGSL 359

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
                +L  M R   N   PDH  +  ++    K G +D A  + ++M R G+  + +TY
Sbjct: 360 VKMHHLLDMMVR---NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTY 416

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
            I++   C   ++D A      +  +  + PD V +  LI G    D    A     EM 
Sbjct: 417 GIVMDALCMVGKVDDAMAQFGRLISEG-LTPDAVVFRNLIHGLCARDKWDKAEELAVEMI 475

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RGI P  I + TL+           A  +FD M+R   V+ D++ +N L++GYC  G V
Sbjct: 476 GRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVR-VDVQRDVITYNTLIDGYCLHGKV 534

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +EA +++E M  +G  PN  TY ++ NG     +  +A  L++++  +
Sbjct: 535 DEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASK 582



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 195/431 (45%), Gaps = 31/431 (7%)

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           P+++TY+V+I  C+R     L    L R++  G T    TF  L+ A      L   +  
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKA------LCDKKRT 142

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
            +AM    R +  +    ++  Y+   +G  D++       L +++  + +       + 
Sbjct: 143 SEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTR---GGYP 199

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y T++ G + EGR  DT   L    +  D    PD VTY +++SAL KA +MD+A
Sbjct: 200 PDVVSYNTVINGLLREGRQLDTAYHL--FDQMLDQGLSPDVVTYNSIISALSKARAMDKA 257

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             VL  M + G   NRIT+N LL GYC   + + A  + + M  D  +EPDV +YN L+ 
Sbjct: 258 AVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDG-VEPDVFTYNTLMG 316

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                  S  A   F+ M  RG  P   +Y TL+  +A        + + D M+R+  ++
Sbjct: 317 YLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNG-IQ 375

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D   +N+L+  Y + G V++A  +  +M+  G  P+  TYG + + + +  K  +A+  
Sbjct: 376 PDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQ 435

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELL-DALADICVRAAFFRKALEIVACMEEHG 509
           +  +                +   L PD  +  + +  +C R   + KA E+   M   G
Sbjct: 436 FGRL----------------ISEGLTPDAVVFRNLIHGLCARDK-WDKAEELAVEMIGRG 478

Query: 510 IPPNKTKYKKI 520
           I PN   +  +
Sbjct: 479 ICPNNIFFNTL 489



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 187/433 (43%), Gaps = 37/433 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P V  ++T++  L  +G    +E+ K+FD +VKR             KP++A 
Sbjct: 299 MCRDGVEPDVFTYNTLMGYLCKNGRS--MEARKIFDSMVKR-----------GHKPNSAT 345

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+  A  G   K   L D M   G +PD   +N++I    +  +    + +  ++ 
Sbjct: 346 YGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMR 405

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
             G+     T+  ++ A    G ++ A     + + EG      + R L +    + ++ 
Sbjct: 406 RQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNL-IHGLCARDKW 464

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D  ++  V                ++ +   PN+  + TL+     EG V+    +   M
Sbjct: 465 DKAEELAV---------------EMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLM 509

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R +      D +TY T++      G +D A ++L  M   GV  N +TYN ++ GYC+ 
Sbjct: 510 VRVD---VQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKN 566

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +I+ A  L R+MA    + P +V+Y+ ++ G      +A A   +  M   GI     +
Sbjct: 567 GRIEDAFSLFRQMASKG-VNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGT 625

Query: 360 YTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           Y  ++     ++    A ++F  + L D    ++   +N++++   + G  +EAK +   
Sbjct: 626 YNIILLGLCQNNCTDDALRIFQNLYLID--FHLENRTFNIMIDALLKGGRHDEAKDLFAS 683

Query: 419 MKENGFYPNVATY 431
           +   G  PNV TY
Sbjct: 684 LLARGLVPNVVTY 696



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 55/299 (18%), Positives = 111/299 (37%), Gaps = 66/299 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+   ++T+++ L   G             +V R +   D  +  D + D   
Sbjct: 474 MIGRGICPNNIFFNTLLNHLCKEG-------------MVARAKNIFDLMVRVDVQRDVIT 520

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     GK  +  +L + M   G KP+ +TYN MI    +  R      +  ++ 
Sbjct: 521 YNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMA 580

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + T+                 TI+Q + + RR                     
Sbjct: 581 SKGVNPGIVTY----------------STILQGLFQARRTAAA----------------- 607

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E++  ++ + I            F   +  Y  ++ G        D +R+   + 
Sbjct: 608 ----KELYLWMIKSGIK-----------FDIGT--YNIILLGLCQNNCTDDALRIFQNLY 650

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             +    H ++ T+  ++ AL+K G  D A+ + A +   G+  N +TY +++K   +Q
Sbjct: 651 LID---FHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQ 706



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 34/229 (14%)

Query: 305 AKELLREMADDA--KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           A  L R M   A  K+ P++++Y+++ID    +     A      +   G     I+++ 
Sbjct: 72  AISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSP 131

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKV-----DIVAWNMLVEGYCRMGLVEEAKRIIE 417
           L+KA       K  ++  D  LR  R+ V     ++ ++ +L++G C     ++A  ++ 
Sbjct: 132 LLKALC---DKKRTSEAMDIALR--RMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLH 186

Query: 418 RM-----KENGFYPNVATYGSLANGI-SLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
            M        G+ P+V +Y ++ NG+    R+   A  L+ ++             D  L
Sbjct: 187 TMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQM------------LDQGL 234

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            P +     ++ AL+    +A    KA  ++  M ++G  PN+  +  +
Sbjct: 235 SPDVVTYNSIISALS----KARAMDKAAVVLVRMVKNGAMPNRITHNSL 279


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 222/471 (47%), Gaps = 46/471 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD    +++LN   +  +    + L DQM E G KPD +T+N +I      ++    V 
Sbjct: 147 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVA 206

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++++++ G    + T+ ++V      GD+++A ++++ M +G+        E D+  Y+
Sbjct: 207 LVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGK-------IEADVVIYN 259

Query: 175 SENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +  +G       DD   +F K+    I              P+   Y +L+    N GR 
Sbjct: 260 TIIDGLCKYKHIDDAFALFNKMETKGIR-------------PDVFTYNSLISCLCNYGRW 306

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           SD  R+L  M  ++ N   P+ VT++ ++ A VK G +  A ++  EM +  +  +  TY
Sbjct: 307 SDASRLLSNMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           + L+ G+C   ++D+AK +  E+       P+VV+YN LI GF         +  F EM 
Sbjct: 364 SSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RG+    ++Y TL++    +    +A K+F +M+ D  V  DI+ +++L++G C+ G +
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG-VPPDIITYSILLDGLCKYGKL 481

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           E+A  + E ++++   P++ TY  +  G+  A K  +   L+      C +  +GV    
Sbjct: 482 EKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF------CSLSLKGV---- 531

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 KP+  +   +     R     +A  +   M+E G  P+   Y  +
Sbjct: 532 ------KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTL 576



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 192/441 (43%), Gaps = 43/441 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P +  +  VV+ L   GD          D+ +  ++K     I    + D   
Sbjct: 211 MVQRGCQPDLVTYGAVVNGLCKRGD---------IDLALSLLKKMEKGKI----EADVVI 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++             LF++M   G +PDV TYN +I       R      +L  ++
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G L  AE +   M +   D        D+  YSS   G 
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-------DIFTYSSLINGF 370

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D+   +FE              ++ K   PN   Y TL+KG+    RV + + +
Sbjct: 371 CMHDRLDEAKHMFE-------------LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         + VTY T++  L +AG  D A+++  +M   GVP + ITY+ILL G
Sbjct: 418 F---REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +++KA  ++ E    +K+EPD+ +YNI+I+G             F  +  +G+ P
Sbjct: 475 LCKYGKLEKAL-VVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I YTT++  F      + A+ +F EM  D  +  D   +N L+    R G    +  +
Sbjct: 534 NVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP-DSGCYNTLIRARLRDGDKAASAEL 592

Query: 416 IERMKENGFYPNVATYGSLAN 436
           I+ M+  GF  + +T   + N
Sbjct: 593 IKEMRSCGFVGDASTISMVIN 613



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 177/405 (43%), Gaps = 61/405 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A A + K    + L ++M       D+ +YN++I    R S+  L + V
Sbjct: 78  PSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  Y     +  A  +V  M E                   
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE------------------- 178

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P++  + TL+ G     + S+ V +
Sbjct: 179 -------------------------------MGYKPDTVTFNTLIHGLFLHNKASEAVAL 207

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M ++      PD VTY  VV+ L K G +D A  +L +M +  + A+ + YN ++ G
Sbjct: 208 VDQMVQR---GCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 264

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   ID A  L  +M +   I PDV +YN LI         + A    + M  R I P
Sbjct: 265 LCKYKHIDDAFALFNKM-ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINP 323

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             ++++ L+ AF    +   A K++DEM++   DP    DI  ++ L+ G+C    ++EA
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEA 379

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           K + E M     +PNV TY +L  G   A++  E + L++E+ +R
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 133/547 (24%), Positives = 243/547 (44%), Gaps = 72/547 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS-------- 52
           M++SG  P V  ++ ++  L  SG+    E+ K F+ + K +R    P++V+        
Sbjct: 313 MIKSGIDPGVHTFTVLIDALVKSGNID--EACKFFNGM-KNLR--CSPNVVTYTTLVNGL 367

Query: 53  -------------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
                              +  PD  AYN +++     G+      LF +M + G  P++
Sbjct: 368 AKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNL 427

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
            TYN+MI +  +A R+     +   + E G    + T+ +L+      G ++    I++ 
Sbjct: 428 RTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKE 487

Query: 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
           M E +   C I R     D ++ +EG  +  D   E            P L  K+    +
Sbjct: 488 MVE-KGGECIISR-----DSNAGHEGTIEGADRTVEY-----------PSLGFKSLGEIT 530

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y TLM  +++ G V + V++L  M++ E     P  VTYTT+V  L KAG +D A  +
Sbjct: 531 --YNTLMSAFIHNGHVDEAVKLLEVMKKHE---CIPTVVTYTTLVDGLGKAGRLDEAVSL 585

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM + G   + +TY+ L+  + ++ Q +++  L  EM     +  DV +Y+++I+   
Sbjct: 586 LREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCV-ADVSTYSLVINCLC 644

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
             DD   AL  F  M+  G+ P   +Y TL+ +     +   A ++F+E L++  +  D 
Sbjct: 645 KSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNE-LQESSLVPDT 703

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             +N++V G  +   V+EA ++++ MK     P++ TY SL +G+  + +  EA  ++ +
Sbjct: 704 FVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTK 763

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           + E                   +PD     +L D+  +      AL I   M +    P+
Sbjct: 764 MTEEGH----------------EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPD 807

Query: 514 KTKYKKI 520
              Y  +
Sbjct: 808 VVTYSSL 814



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 123/507 (24%), Positives = 221/507 (43%), Gaps = 49/507 (9%)

Query: 7    LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
            +P V  ++T+V  L  +G           D  V  +R+          +P    Y++++ 
Sbjct: 560  IPTVVTYTTLVDGLGKAGR---------LDEAVSLLREMEK----QGCEPSVVTYSSLMA 606

Query: 67   ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
            +     + ++ L LFD+M   G   DV TY+++I    ++      + V  R+ E G+  
Sbjct: 607  SFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEP 666

Query: 127  CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
             +  +++L+++ V    ++ A  I   ++E        +  + +      N  D+     
Sbjct: 667  LLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEAC--- 723

Query: 187  VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
               KL+ +  N +    +LP  F      YT+L+ G    GR+ +   M   M  +    
Sbjct: 724  ---KLVDSMKNQN----ILPDLFT-----YTSLLDGLGKSGRLEEAFNMFTKMTEE---G 768

Query: 247  SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
              PD V YT+++  L K G +  A  +   M +     + +TY+ L+    ++ ++++A 
Sbjct: 769  HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAY 828

Query: 307  ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
                E +      P+V  Y+ LID F        AL  F EM+ R   P  ++Y  L+  
Sbjct: 829  YFF-ENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSG 887

Query: 367  FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
             A + +  +A K+ +EM +   V  D+V +N+L++G  +MG+V+EA+   +RMKE G  P
Sbjct: 888  LAKAGRLNVAEKLLEEMEKVGCVP-DLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVP 946

Query: 427  NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
            +V T+ SL   +    K  EA  L+  ++E      EG N          P     + L 
Sbjct: 947  DVITFTSLIESLGKVDKLLEACELFDSMEE------EGYN----------PSVVTYNVLI 990

Query: 487  DICVRAAFFRKALEIVACMEEHGIPPN 513
            DI  RA    +A  I   M+  G  P+
Sbjct: 991  DILGRAGKVHEAAMIFHEMKVKGCMPD 1017



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 121/561 (21%), Positives = 211/561 (37%), Gaps = 120/561 (21%)

Query: 22  ASGDDGPVESVKLFDVVVKRVRKFSDPDIV---------SDSKPDTAAYNAVLNACANLG 72
           A   DG   +V  + +++KR+    + D V            +       ++L    +  
Sbjct: 172 AGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTN 231

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQ 132
                L++F+QM  FG  P    YN +++L  +    H  V V  ++ +  I     TF+
Sbjct: 232 NVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFR 291

Query: 133 SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL 192
             V ++                R GR D                                
Sbjct: 292 IFVHSF---------------NRSGRLD-------------------------------- 304

Query: 193 PNSINPSSEP--PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
                P++EP   ++     P    +T L+   +  G + +  +    M+        P+
Sbjct: 305 -----PAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLR---CSPN 356

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTYTT+V+ L KAG ++ A +V  EM       + I YN L+ G  +  + D A  L +
Sbjct: 357 VVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFK 416

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           EM D   + P++ +YNI+I           A   F++++ +G  P   +Y TL+      
Sbjct: 417 EMKDRGLV-PNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKG 475

Query: 371 SQPKLANKVFDEML---------RDPRV---------------------KVDIVAWNMLV 400
            Q      +  EM+         RD                         +  + +N L+
Sbjct: 476 GQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLM 535

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI-KERCE 459
             +   G V+EA +++E MK++   P V TY +L +G+  A +  EA+ L +E+ K+ CE
Sbjct: 536 SAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCE 595

Query: 460 VKKEGVNADSDLPPPLKPDEE-----LLD------ALADICVRAAFFR---------KAL 499
                V   S +    K D+E     L D       +AD+   +             +AL
Sbjct: 596 --PSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQAL 653

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
           ++   M+E G+ P    YK +
Sbjct: 654 DVFGRMKEEGMEPLLGNYKTL 674



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/292 (19%), Positives = 111/292 (38%), Gaps = 66/292 (22%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M +   +P V  +S+++  L   G +G VE    F           +  I     P+   
Sbjct: 799  MAKKRCVPDVVTYSSLIDSL---GKEGRVEEAYYF----------FENSISKGCTPNVGV 845

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            Y++++++    G   + L+LF++M      P+++TYN ++   A+A R ++   +LE + 
Sbjct: 846  YSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEME 905

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            ++G    + T+  L+      G ++ AE+  + M+E                        
Sbjct: 906  KVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKE------------------------ 941

Query: 181  DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                      K   P+   +T+L++     G+V   +       
Sbjct: 942  --------------------------KGIVPDVITFTSLIESL---GKVDKLLEACELFD 972

Query: 241  RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
              E+   +P  VTY  ++  L +AG +  A  +  EM   G   + IT  I+
Sbjct: 973  SMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 236/540 (43%), Gaps = 56/540 (10%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           +L+D VV  V+   D   +   KPDT  YN +LN   +  K K        M     + D
Sbjct: 146 ELYDEVVGIVKVMEDEYRI---KPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHD 202

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           V T+N++IK   +A +    + ++E +   G++   TTF +++  Y+  G+L+ A  I +
Sbjct: 203 VSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKE 262

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
            M E       +   + +  +  +   D              +++   E   + + F P+
Sbjct: 263 QMVEYGCPCTDVTVNVLINGFCKQGRID-------------QALSFIQEA--VSEGFRPD 307

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y TL+ G    G     + ++ AM         PD  TY +++S L K G ++ A +
Sbjct: 308 QFTYNTLVNGLCKIGHAKHAMEVVDAMLL---GGLDPDIYTYNSLISGLCKLGEIEEAVK 364

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +L +M       N +TYN ++   C++ ++D+A E+ R +     I PDV ++N LI G 
Sbjct: 365 ILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKG-ILPDVCTFNSLIQGL 423

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
            L  +   A+  F EM+ +G  P + +Y  L+ +   S + + A  +  EM  +   + +
Sbjct: 424 CLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCAR-N 482

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +V +N L++G+C+   +EEA+ I + M+  G   +  TY +L +G+  +++  +A  L  
Sbjct: 483 VVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLM- 541

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                          D  +   L+PD+   ++L     +    +KA +IV  M   G  P
Sbjct: 542 ---------------DQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNP 586

Query: 513 NKTKYKKIY--------VEMHSR---------MFTSKHASQARQDRRRERKRAAEAFKFW 555
           +   Y  +         V++ SR         M  + HA         +R R  EA + +
Sbjct: 587 DIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLF 646



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 22/399 (5%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERIL 120
           N ++N     G+  + L    +    G +PD  TYN ++  LC     KH +  V++ +L
Sbjct: 277 NVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAME-VVDAML 335

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + T+ SL++     G++E A  I+  M         +     +     EN  D
Sbjct: 336 LGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVD 395

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           +  +     +LL +            K   P+   + +L++G          + +   M+
Sbjct: 396 EATE---IARLLTS------------KGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMK 440

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD  TY  ++ +L  +  ++ A  +L EM   G   N + YN L+ G+C+  
Sbjct: 441 GK---GCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNK 497

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I++A+E+  EM +   +  D V+YN LIDG         A    ++M   G+ P K +Y
Sbjct: 498 RIEEAEEIFDEM-ELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTY 556

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +L+  F  +   K A  +   M        DIV +  L+ G C+ G V+ A R++  ++
Sbjct: 557 NSLLTHFCKTGDIKKAADIVQTM-TSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQ 615

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
             G       Y  +   +    +  EA+ L++E+ ++ E
Sbjct: 616 MKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSE 654



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 183/443 (41%), Gaps = 50/443 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P    ++T+V+ L   G               K   +  D  ++    PD   YN++
Sbjct: 303 GFRPDQFTYNTLVNGLCKIGH-------------AKHAMEVVDAMLLGGLDPDIYTYNSL 349

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++    LG+ ++ +++ DQM      P+ +TYN +I    + +R      +   +   GI
Sbjct: 350 ISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGI 409

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + TF SL+        L ++     AM                 D   E +G     
Sbjct: 410 LPDVCTFNSLIQG------LCLSSNHKSAM-----------------DLFEEMKGKGCRP 446

Query: 185 DEVFEKLLPNSINPS---SEPPLLPKTF-----APNSRIYTTLMKGYMNEGRVSDTVRML 236
           DE    +L +S+  S    E   L K       A N  IY TL+ G+    R+ +   + 
Sbjct: 447 DEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIF 506

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M  Q       D VTY T++  L K+  ++ A Q++ +M   G+  ++ TYN LL  +
Sbjct: 507 DEMELQ---GVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHF 563

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   I KA ++++ M       PD+V+Y  LI G         A      ++ +G+  T
Sbjct: 564 CKTGDIKKAADIVQTMTSSG-CNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLT 622

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR-MGLVEEAKRI 415
             +Y  +++A    ++   A ++F EML D     D + + ++  G C   G + EA   
Sbjct: 623 PHAYNPVIQALFKRNRTHEAMRLFREML-DKSEPPDAITYKIVYRGLCNGGGPIGEAVDF 681

Query: 416 IERMKENGFYPNVATYGSLANGI 438
              M E G  P  +++  LA G+
Sbjct: 682 TVEMIERGNIPEFSSFVMLAEGL 704



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/424 (20%), Positives = 179/424 (42%), Gaps = 38/424 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P +  +++++S L   G+    E+VK+ D +V R           D  P+   
Sbjct: 334 MLLGGLDPDIYTYNSLISGLCKLGEIE--EAVKILDQMVSR-----------DCSPNAVT 380

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YNA++++     +  +  ++   +   G  PDV T+N +I+ LC  ++ K  +  + E +
Sbjct: 381 YNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMD-LFEEM 439

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G      T+  L+ +      LE A  +++ M         +I    ++ +      
Sbjct: 440 KGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKR- 498

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             ++ +E+F+++    +             + +S  Y TL+ G     RV D  +++  M
Sbjct: 499 -IEEAEEIFDEMELQGV-------------SRDSVTYNTLIDGLCKSKRVEDAAQLMDQM 544

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             +      PD  TY ++++   K G + +A  ++  MT  G   + +TY  L+ G C+ 
Sbjct: 545 IME---GLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKA 601

Query: 300 LQIDKAKELLREMADDAKI-EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
            ++  A  LLR +     +  P   +YN +I      + +  A+  F EM  +   P  I
Sbjct: 602 GRVQVASRLLRSIQMKGMVLTPH--AYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAI 659

Query: 359 SYTTLMKAFALSSQPKLANKVFD-EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           +Y  + +       P      F  EM+    +  +  ++ ML EG C + + +   ++++
Sbjct: 660 TYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIP-EFSSFVMLAEGLCTLSMDDTLVKLVD 718

Query: 418 RMKE 421
            + E
Sbjct: 719 MIME 722



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 140/338 (41%), Gaps = 70/338 (20%)

Query: 234 RMLGAMRRQEDNASH--------------PDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +++  +RRQ D  +               P    Y  ++  L KAGS +  R+VL EM  
Sbjct: 66  QLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKL 125

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID--- 336
            G   +R  + I ++ Y +    D+   +++ M D+ +I+PD   YN+L++  +L+D   
Sbjct: 126 SGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLN--VLVDANK 183

Query: 337 ----DSAG------------------------------ALTFFNEMRARGIAPTKISYTT 362
               +SA                               A+    EM + G++P + ++TT
Sbjct: 184 LKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTT 243

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           +M+ +        A ++ ++M+       D V  N+L+ G+C+ G +++A   I+     
Sbjct: 244 IMQGYIEGGNLDGALRIKEQMVEYGCPCTD-VTVNVLINGFCKQGRIDQALSFIQEAVSE 302

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           GF P+  TY +L NG+    K G A       K   EV       D+ L   L PD    
Sbjct: 303 GFRPDQFTYNTLVNGLC---KIGHA-------KHAMEV------VDAMLLGGLDPDIYTY 346

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++L     +     +A++I+  M      PN   Y  I
Sbjct: 347 NSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAI 384


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 211/452 (46%), Gaps = 37/452 (8%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP+  A++TV+      GD    ++  LF+ +V+R              PD + YN V+N
Sbjct: 213 LPNAVAYNTVIDGFFKEGDVN--KACDLFNEMVQR-----------GISPDLSTYNCVVN 259

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
           A        K   +  QM + G  PD  TYN +I   +   +    V V +++   GI  
Sbjct: 260 ALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILP 319

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIV--QAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            + T  SL+A+    G ++ A  +    AM+  + D+     ++ L  Y+++  G   D 
Sbjct: 320 DVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDI--FSYKIMLNGYATK--GCLVDL 375

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
            E+F  +L + I             AP+S I+  L+K Y   G +     +   MR Q  
Sbjct: 376 TELFNLMLSDGI-------------APDSHIFNVLIKAYAKCGMLDRATIIFNEMREQ-- 420

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD VTY+TV++AL + G MD A +   +M   GV  +  TY+ L++G+C    + K
Sbjct: 421 -GVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLK 479

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           AK+L+ +M +   + PD+  +N +I+    +     A   F+   + G+ P  + Y TLM
Sbjct: 480 AKDLVLQMMNKG-MRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLM 538

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             + L  + + A +VFD M+    ++ ++V +  LV GYC++G ++E   +   +   G 
Sbjct: 539 DGYCLVGKMENALRVFDVMV-SAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGI 597

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            P+   Y  + +G+  A +   A + + E+ E
Sbjct: 598 KPSTTLYNIILHGLFQAGRTVPAKVKFHEMTE 629



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 192/455 (42%), Gaps = 46/455 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP    +++++   +++G          +   V+  +K +   I+    PD   
Sbjct: 277 MVDKGVLPDNWTYNSLIYGYSSTGQ---------WKEAVRVSKKMTSQGIL----PDVVT 323

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N+++ +    GK K    +FD M   G K D+ +Y +M+   A       L  +   +L
Sbjct: 324 LNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLML 383

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             GI      F  L+ AY   G L+ A  I   MRE          E D+  YS+     
Sbjct: 384 SDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGV-------EPDVVTYSTVIAAL 436

Query: 177 -NEGDDDDDDEVFEKLLPNSINPS-SEPPLLPKTFAPNSRIYTT--LMKGYMNEGRVSDT 232
              G  DD  E F +++   + PS S    L + F  +  +     L+   MN+G   D 
Sbjct: 437 CRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDI 496

Query: 233 ------VRMLGAMRRQEDNAS----------HPDHVTYTTVVSALVKAGSMDRARQVLAE 276
                 +  L  + R  D  +          HP+ + Y T++      G M+ A +V   
Sbjct: 497 GCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDV 556

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  N + Y  L+ GYC+  +ID+   L RE+     I+P    YNI++ G     
Sbjct: 557 MVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKG-IKPSTTLYNIILHGLFQAG 615

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
            +  A   F+EM   GIA  + +Y+ ++     +S    A  +F E L    VK+DI   
Sbjct: 616 RTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKE-LHAMNVKIDITTL 674

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           N+++ G  ++  VEEAK +   +  +G  P+V TY
Sbjct: 675 NIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTY 709



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 135/336 (40%), Gaps = 25/336 (7%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P+  +P    Y  LM       R   T+   G + +        D +  + ++  L +A 
Sbjct: 101 PRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLK---TGLGIDTIMISNLLRGLCEAK 157

Query: 266 SMDRARQVLAE-MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI-EPDVV 323
               A  +L   M  +G   +  +Y I+LK  C   +  +A ELLR MA+   +  P+ V
Sbjct: 158 RTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAV 217

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN +IDGF    D   A   FNEM  RGI+P   +Y  ++ A   +     A  +  +M
Sbjct: 218 AYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQM 277

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + D  V  D   +N L+ GY   G  +EA R+ ++M   G  P+V T  SL   +    K
Sbjct: 278 V-DKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGK 336

Query: 444 PGEALLLWKEIKERCE-------------VKKEGVNADSD------LPPPLKPDEELLDA 484
             +A  ++  +  + +                +G   D        L   + PD  + + 
Sbjct: 337 IKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNV 396

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L     +     +A  I   M E G+ P+   Y  +
Sbjct: 397 LIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTV 432



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 155/370 (41%), Gaps = 58/370 (15%)

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           P + TY +++  C RA R  L +    ++L+ G+ +                D  +   +
Sbjct: 106 PTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGI----------------DTIMISNL 149

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
           ++ + E +R        LD+  +   + G                         +P  F+
Sbjct: 150 LRGLCEAKRTA----EALDILLHRMPHLG------------------------CVPDVFS 181

Query: 211 PNSRIYTTLMKGYMNE---GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
                Y  ++K   ++   G+  + +RM+     +      P+ V Y TV+    K G +
Sbjct: 182 -----YCIVLKSLCSDRKSGQADELLRMMA----EGGAVCLPNAVAYNTVIDGFFKEGDV 232

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           ++A  +  EM + G+  +  TYN ++   C+   +DKA+ +LR+M D   + PD  +YN 
Sbjct: 233 NKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG-VLPDNWTYNS 291

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI G+        A+    +M ++GI P  ++  +LM +     + K A  VFD M    
Sbjct: 292 LIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKG 351

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           + K DI ++ +++ GY   G + +   +   M  +G  P+   +  L    +       A
Sbjct: 352 Q-KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRA 410

Query: 448 LLLWKEIKER 457
            +++ E++E+
Sbjct: 411 TIIFNEMREQ 420



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 27/211 (12%)

Query: 336 DDSAGALTFFNEM-RARG---IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           D  A A+  FN + RA G   ++PT  +Y  LM     + +PKL    F ++L+   + +
Sbjct: 83  DGPALAVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTG-LGI 141

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRII-ERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           D +  + L+ G C      EA  I+  RM   G  P+V +Y  +   +   RK G+A  L
Sbjct: 142 DTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADEL 201

Query: 451 WKEIKERCEVK---------------KEG-VNADSDL-----PPPLKPDEELLDALADIC 489
            + + E   V                KEG VN   DL        + PD    + + +  
Sbjct: 202 LRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNAL 261

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            +A    KA  I+  M + G+ P+   Y  +
Sbjct: 262 CKARAMDKAEAILRQMVDKGVLPDNWTYNSL 292


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 207/486 (42%), Gaps = 75/486 (15%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +Y+ V++   +LG+ KK L+L D M   G KP+  TYN +I L  +  +     
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE 348

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  ++   I      + +L+  +   G +  A                          
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA-------------------------- 382

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              N+  D+                     +L K  +P+   YTTL++G+   G+V +  
Sbjct: 383 ---NKWFDE---------------------MLSKKISPDYITYTTLIQGFGQGGKVIEPQ 418

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +      PD VTYTT++    KAG M  A  +  EM ++G+  N +TY  L+
Sbjct: 419 NLFHEMISR---GLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALI 475

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++D A ELL EM     ++ +V  YN +++G     +   A+    EM   GI
Sbjct: 476 DGLCKHGELDTANELLDEMRKKG-LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  I+YTT++ A+        A+K+  EML D  ++  +V +N+L+ G+C +G++E+  
Sbjct: 535 DPDAITYTTVIDAYCRLGDIDKAHKLLQEML-DRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           R++  M E G  P+  TY +L     +         ++K +      + +GV        
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRM------RNQGV-------- 639

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
              PD    + L     +A   ++A  +   M E G  P  T Y  +      R +  K 
Sbjct: 640 --APDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI----KRFYKKKK 693

Query: 534 ASQARQ 539
             +AR+
Sbjct: 694 ILEARE 699



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 19/345 (5%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V+   K+ D  +     PD   Y  ++      GK  +   LF +M   G KPD +TY  
Sbjct: 379 VRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTT 438

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I +  +A        +   +++MG+T  + T+ +L+      G+L+ A  ++  MR+  
Sbjct: 439 LIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                   +L++  Y+S   G     +      +  +I    E  +      P++  YTT
Sbjct: 499 L-------QLNVCIYNSMVNGICKAGN------IEQAIKLMKEMEV--AGIDPDAITYTT 543

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++  Y   G +    ++L  M    D    P  VT+  +++     G ++   ++L  M 
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEML---DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWML 600

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+  + ITYN L+K +C +  ++   ++ + M +   + PD  +YNILI G     + 
Sbjct: 601 EKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG-VAPDSNTYNILIKGHCKARNL 659

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
             A   + EM  +G  PT  SY  L+K F    +   A ++F+EM
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEM 704


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 230/496 (46%), Gaps = 46/496 (9%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSK--------PDTAAYNAVLNACANLGKPKKFLQLFDQM 84
           KL   +V R+R++ D  ++S SK        P+T   N ++N    +        +  ++
Sbjct: 95  KLLSAIV-RMRQYYDA-VISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKV 152

Query: 85  HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
            + G +P ++T+  +I    +A      + + + ++  G    + T+ +++      G+ 
Sbjct: 153 IKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGET 212

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
             A  +++ M E       +  + D+  YS+        D    ++L+  +++  S   +
Sbjct: 213 AAAAGLIKKMGE-------VGCQPDVVTYSTL------IDSLCKDRLVNEALDIFSY--M 257

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
             K  +P    YT+L++G  +  R  +   ML  M         PD VT++ ++    K 
Sbjct: 258 KAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLN---IMPDIVTFSLLIDIFCKE 314

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G++  A+ VL  MT +GV  N ITYN L+ GY  Q+++ +A++L   M      +PDV S
Sbjct: 315 GNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG-CKPDVFS 373

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y+ILI+G+ ++     A   FNEM  +G+ P  +SYTTL+ AF    + + A ++F +M 
Sbjct: 374 YSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMH 433

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
            +  +  D+  +++L+EG+C+ G + +A R+   M+     PN+  Y  L + +  +   
Sbjct: 434 TNGYLP-DLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNL 492

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
             A  L+ E+                    L+PD ++   + +   +     +ALE    
Sbjct: 493 NHARKLFSEL----------------FVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRK 536

Query: 505 MEEHGIPPNKTKYKKI 520
           MEE G PPN+  Y  I
Sbjct: 537 MEEDGCPPNEFSYNVI 552



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/469 (23%), Positives = 212/469 (45%), Gaps = 37/469 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ G  P +  ++T+++ L  +G+    ++++LFD +V R             +PD   
Sbjct: 152 VIKLGLQPTIITFTTLINGLCKAGEFA--QALELFDDMVAR-----------GCQPDVYT 198

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCA-RASRKHLLVFVLER 118
           Y  ++N    +G+      L  +M E G +PDV+TY+ +I  LC  R   + L +F   +
Sbjct: 199 YTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMK 258

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
               GI+  + ++ SL+     F   + A  ++  M     ++   I    L       E
Sbjct: 259 --AKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTS--LNIMPDIVTFSLLIDIFCKE 314

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G+  +   V + +    + P             N   Y +LM GY  +  V +  ++   
Sbjct: 315 GNVLEAQGVLKTMTEMGVEP-------------NVITYNSLMHGYSLQMEVVEARKLFDV 361

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      PD  +Y+ +++       +D A+Q+  EM   G+  N ++Y  L+  +CQ
Sbjct: 362 MITR---GCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQ 418

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ +A+EL ++M  +  + PD+ +Y++L++GF        A   F  M+   + P  +
Sbjct: 419 LGKLREARELFKDMHTNGYL-PDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLV 477

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            YT L+ +   S     A K+F E+     ++ D+  +  ++ G C+ GL++EA     +
Sbjct: 478 MYTILIDSMCKSGNLNHARKLFSELFVHG-LQPDVQIYTTIINGLCKEGLLDEALEAFRK 536

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
           M+E+G  PN  +Y  +  G    +    A+ L  E++++  V  EG  A
Sbjct: 537 MEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGTTA 585



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 23/258 (8%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           I +N LL    +  Q   A   L +  + A + P+  + NILI+ F L+       +   
Sbjct: 91  IQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLA 150

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           ++   G+ PT I++TTL+     + +   A ++FD+M+     + D+  +  ++ G C+M
Sbjct: 151 KVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARG-CQPDVYTYTTIINGLCKM 209

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------- 457
           G    A  +I++M E G  P+V TY +L + +   R   EAL ++  +K +         
Sbjct: 210 GETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSY 269

Query: 458 -------CEV---KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
                  C     K+     +      + PD      L DI  +     +A  ++  M E
Sbjct: 270 TSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTE 329

Query: 508 HGIPPNKTKYKKIYVEMH 525
            G+ PN   Y  +   MH
Sbjct: 330 MGVEPNVITYNSL---MH 344


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/486 (24%), Positives = 207/486 (42%), Gaps = 75/486 (15%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +Y+ V++   +LG+ KK L+L D M   G KP+  TYN +I L  +  +     
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE 348

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  ++   I      + +L+  +   G +  A                          
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA-------------------------- 382

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              N+  D+                     +L K  +P+   YTTL++G+   G+V +  
Sbjct: 383 ---NKWFDE---------------------MLSKKISPDYITYTTLIQGFGQGGKVIEPQ 418

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +      PD VTYTT++    KAG M  A  +  EM ++G+  N +TY  L+
Sbjct: 419 NLFHEMISR---GLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALI 475

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++D A ELL EM     ++ +V  YN +++G     +   A+    EM   GI
Sbjct: 476 DGLCKHGELDTANELLDEMRKKG-LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  I+YTT++ A+        A+K+  EML D  ++  +V +N+L+ G+C +G++E+  
Sbjct: 535 DPDAITYTTVIDAYCRLGDIDKAHKLLQEML-DRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           R++  M E G  P+  TY +L     +         ++K +      + +GV        
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRM------RNQGV-------- 639

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
              PD    + L     +A   ++A  +   M E G  P  T Y  +      R +  + 
Sbjct: 640 --APDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI----KRFYKKRK 693

Query: 534 ASQARQ 539
             +AR+
Sbjct: 694 FXEARE 699



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 148/349 (42%), Gaps = 50/349 (14%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V+   K+ D  +     PD   Y  ++      GK  +   LF +M   G KPD +TY  
Sbjct: 379 VRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTT 438

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG- 157
           +I +  +A        +   +++MG+T  + T+ +L+      G+L+ A  ++  MR+  
Sbjct: 439 LIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498

Query: 158 -RRDVC-------------------KIIRELDLE-------DYSSENE-----GDDDDDD 185
            + +VC                   K+++E+++         Y++  +     GD D   
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           ++ +++L   + P+                +  LM G+   G + D  R+LG M    + 
Sbjct: 559 KLLQEMLDRGLQPTVVT-------------FNVLMNGFCMLGMLEDGDRLLGWML---EK 602

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD +TY T++       SM+   ++   M   GV  +  TYNIL+KG+C+   + +A
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             L +EM +   + P V SYN LI  F        A   F EMR  G+ 
Sbjct: 663 WFLYKEMIEKGYV-PTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLV 710


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 238/520 (45%), Gaps = 57/520 (10%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           RSG   +V   + +V+ L     DG +E V  F   V+   K   PDIV+        YN
Sbjct: 228 RSGVGINVYTLNIMVNALC---KDGKMEKVGTFLSQVQE--KGVYPDIVT--------YN 274

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            +++A ++ G  ++  +L + M   G  P V TYN +I    +  +      V   +L  
Sbjct: 275 TLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS 334

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----EN 177
           G++   TT++SL+      GD+   E +   MR   RDV       DL  +SS       
Sbjct: 335 GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS--RDVVP-----DLVCFSSMMSLFTR 387

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G+ D     F        N   E  L+P     ++ IYT L++GY  +G +S  + +  
Sbjct: 388 SGNLDKALMYF--------NSVKEAGLIP-----DNVIYTILIQGYCRKGMISVAMNLRN 434

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M +Q       D VTY T++  L K   +  A ++  EMT   +  +  T  IL+ G+C
Sbjct: 435 EMLQQ---GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHC 491

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +   +  A EL ++M +  +I  DVV+YN L+DGF  + D   A   + +M ++ I PT 
Sbjct: 492 KLGNLQNAMELFQKMKEK-RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 550

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ISY+ L+ A         A +V+DEM+    +K  ++  N +++GYCR G   + +  +E
Sbjct: 551 ISYSILVNALCSKGHLAEAFRVWDEMI-SKNIKPTVMICNSMIKGYCRSGNASDGESFLE 609

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           +M   GF P+  +Y +L  G        +A  L K+++E     ++G          L P
Sbjct: 610 KMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEE-----EQG---------GLVP 655

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           D    +++     R    ++A  ++  M E G+ P+++ Y
Sbjct: 656 DVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTY 695



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 194/458 (42%), Gaps = 68/458 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLRSG  P    + +++      GD   VE+ K+F  +  R           D  PD   
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGD--VVETEKVFSDMRSR-----------DVVPDLVC 377

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++++++     G   K L  F+ + E G  PD + Y ++I+   R     + + +   +L
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEML 437

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G  + + T+ +++                         +CK  R++  E         
Sbjct: 438 QQGCAMDVVTYNTILHG-----------------------LCK--RKMLGEA-------- 464

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               D++F        N  +E  L P ++       T L+ G+   G + + + +   M+
Sbjct: 465 ----DKLF--------NEMTERALFPDSYT-----LTILIDGHCKLGNLQNAMELFQKMK 507

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +       D VTY T++    K G +D A+++ A+M    +    I+Y+IL+   C + 
Sbjct: 508 EKR---IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKG 564

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            + +A  +  EM     I+P V+  N +I G+    +++   +F  +M + G  P  ISY
Sbjct: 565 HLAEAFRVWDEMISK-NIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERM 419
            TL+  F        A  +  +M  +    V D+  +N ++ G+CR   ++EA+ ++ +M
Sbjct: 624 NTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            E G  P+ +TY  + NG        EA  +  E+ +R
Sbjct: 684 IERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQR 721



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 148/334 (44%), Gaps = 35/334 (10%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           + + ++   +PD VTY T++SA    G M+ A +++  M   G      TYN ++ G C+
Sbjct: 258 LSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCK 317

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             + ++AKE+  EM     + PD  +Y  L+       D       F++MR+R + P  +
Sbjct: 318 HGKYERAKEVFAEMLRSG-LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLV 376

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            ++++M  F  S     A   F+  +++  +  D V + +L++GYCR G++  A  +   
Sbjct: 377 CFSSMMSLFTRSGNLDKALMYFNS-VKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNE 435

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M + G   +V TY ++ +G+   +  GEA  L+ E+ ER                 L PD
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER----------------ALFPD 479

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY----------------KKIYV 522
              L  L D   +    + A+E+   M+E  I  +   Y                K+I+ 
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539

Query: 523 EMHSR-MFTSKHASQARQDRRRERKRAAEAFKFW 555
           +M S+ +  +  +     +    +   AEAF+ W
Sbjct: 540 DMVSKEILPTPISYSILVNALCSKGHLAEAFRVW 573



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 50/324 (15%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVP----------------ANRI 287
           N  H   ++ + ++  LV++G +  A+  L  M R  GV                 +N  
Sbjct: 108 NFKHTS-LSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDS 166

Query: 288 TYNILLKGYCQQLQIDKAKE---LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
            +++L++ Y Q  ++ +A E   LLR       I+    + N LI   + I     A   
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSID----ACNALIGSLVRIGWVELAWGV 222

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLAN-KVFDEMLRDPRVKVDIVAWNMLVEGY 403
           + E+   G+      YT  +   AL    K+     F   +++  V  DIV +N L+  Y
Sbjct: 223 YQEISRSGVGIN--VYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAY 280

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE---------- 453
              GL+EEA  ++  M   GF P V TY ++ NG+    K   A  ++ E          
Sbjct: 281 SSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDS 340

Query: 454 ------IKERCE----VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
                 + E C+    V+ E V +D      + PD     ++  +  R+    KAL    
Sbjct: 341 TTYRSLLMEACKKGDVVETEKVFSDMR-SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 399

Query: 504 CMEEHGIPPNKTKYKKIYVEMHSR 527
            ++E G+ P+   Y  I ++ + R
Sbjct: 400 SVKEAGLIPDNVIY-TILIQGYCR 422


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 197/407 (48%), Gaps = 27/407 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +LN  A + K    + L D +   G   D+ T N+++    ++S+ +L    
Sbjct: 70  PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
           L +++++G    + TF SL+  +     +E A ++V  M E   + DV      +D    
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIID---- 185

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S    G  +    +F+++    I P             +  +YT+L+ G  N GR  D  
Sbjct: 186 SLCKNGHVNYALSLFDQMENYGIRP-------------DVVMYTSLVNGLCNSGRWRDAD 232

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M +++     PD +T+  ++ A VK G    A ++  EM R+ +  N  TY  L+
Sbjct: 233 SLLRGMTKRK---IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLI 289

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C +  +D+A+++   M       PDVV+Y  LI+GF        A+  F EM  +G+
Sbjct: 290 NGFCMEGCVDEARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGL 348

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               I+YTTL++ F    +P +A +VF  M+    V  +I  +N+L+   C  G V++A 
Sbjct: 349 TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRG-VPPNIRTYNVLLHCLCYNGKVKKAL 407

Query: 414 RIIERMKE---NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            I E M++   +G  PN+ TY  L +G+    K  +AL++++++++R
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKR 454



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 198/407 (48%), Gaps = 27/407 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   + +++N      + ++ + + +QM E G KPDV+ Y  +I    +    +  + 
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALS 198

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLED 172
           + +++   GI   +  + SLV      G    A+++++ M  R+ + DV      +D   
Sbjct: 199 LFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALID--- 255

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
            +   EG   D +E++ +++  SI             APN   YT+L+ G+  EG V + 
Sbjct: 256 -AFVKEGKFLDAEELYNEMIRMSI-------------APNIFTYTSLINGFCMEGCVDEA 301

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +M   M   E     PD V YT++++   K   +D A ++  EM++ G+  N ITY  L
Sbjct: 302 RQMFYLM---ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR- 351
           ++G+ Q  + + A+E+   M     + P++ +YN+L+           AL  F +M+ R 
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRG-VPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417

Query: 352 --GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G+AP   +Y  L+     + + + A  VF++M R   + + I+ + ++++G C+ G V
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM-RKREMDIGIITYTIIIQGMCKAGKV 476

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + A  +   +   G  PNV TY ++ +G+       EA +L++++KE
Sbjct: 477 KNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 144/355 (40%), Gaps = 56/355 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y  ++++    G     L LFDQM  +G +PDV+ Y  ++     + R      
Sbjct: 174 KPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADS 233

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-------------------- 154
           +L  + +  I   + TF +L+ A+V  G    AE +   M                    
Sbjct: 234 LLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC 293

Query: 155 REGRRDVCKIIREL--------DLEDYSSENEG-----DDDDDDEVF-----EKLLPNSI 196
            EG  D  + +  L        D+  Y+S   G       DD  ++F     + L  N+I
Sbjct: 294 MEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTI 353

Query: 197 NPSS---------EPPLLPKTFA--------PNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             ++         +P +  + F+        PN R Y  L+      G+V   + +   M
Sbjct: 354 TYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM 413

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +++E +   P+  TY  ++  L   G +++A  V  +M +  +    ITY I+++G C+ 
Sbjct: 414 QKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKA 473

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            ++  A  L   +     ++P+VV+Y  +I G         A   F +M+  G++
Sbjct: 474 GKVKNAVNLFCSLPSKG-VKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 17/203 (8%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           +  D+ + N+L++ F        A +F  +M   G  P  +++T+L+  F L ++ + A 
Sbjct: 103 VSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAM 162

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            + ++M+ +  +K D+V +  +++  C+ G V  A  + ++M+  G  P+V  Y SL NG
Sbjct: 163 SMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +  + +  +A  L + + +R                 +KPD    +AL D  V+   F  
Sbjct: 222 LCNSGRWRDADSLLRGMTKR----------------KIKPDVITFNALIDAFVKEGKFLD 265

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           A E+   M    I PN   Y  +
Sbjct: 266 AEELYNEMIRMSIAPNIFTYTSL 288



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL  F  M      P+ I +T L+   A   +  +   + D  L+   V  D+   N+L+
Sbjct: 56  ALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDH-LQIMGVSHDLYTCNLLM 114

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             +C+      A   + +M + GF P++ T+ SL NG  L  +  EA+ +  ++ E    
Sbjct: 115 NCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM--- 171

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                         +KPD  +   + D   +      AL +   ME +GI P+   Y  +
Sbjct: 172 -------------GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSL 218


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/487 (25%), Positives = 216/487 (44%), Gaps = 42/487 (8%)

Query: 55  KPDTAAYNAVLNACANLGK-PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           +P    +N +L+A   +       + L  QM   G  PD  T +++I    +  R  L  
Sbjct: 118 RPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGF 177

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDV---------- 161
            VL +I+++G+ L + TF +L+      G    A  +   M  R  + DV          
Sbjct: 178 SVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGL 237

Query: 162 CKIIRELDLED-YSSENEGDDDDDDEVFEKLLPN-----SINPSSE--PPLLPKTFAPNS 213
           CKI   +     +    E     D   +  ++ +      +N + +    +  K  +PN 
Sbjct: 238 CKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNI 297

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y +L++G  N  R  +   ML  M         P+ VT++ +++   K G++  AR V
Sbjct: 298 FTYNSLIQGLCNFSRWREASAMLNEMMSLN---IMPNIVTFSLLINIFCKEGNVFEARGV 354

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L  MT +GV  N +TY+ L+ GY  Q ++ +A++L   M      +PDV SYNILI+G+ 
Sbjct: 355 LKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKG-CKPDVFSYNILINGYC 413

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A   FNEM  +G+ P  +SY TL+       + + A+ +F  ML +  +  D+
Sbjct: 414 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP-DL 472

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             +++L++G+C+ G + +A R+   M+     PN+  Y  L + +  +R   EA  L+ E
Sbjct: 473 CTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSE 532

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +                    L+P+ ++   + +   +     +ALE    MEE G PPN
Sbjct: 533 L----------------FVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPN 576

Query: 514 KTKYKKI 520
           +  Y  I
Sbjct: 577 EFSYNVI 583



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 205/460 (44%), Gaps = 39/460 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ G    +  ++T+++ L   G  G  ++V+LFD +V R             +PD   
Sbjct: 183 IIKLGLQLTIVTFNTLINGLCKVGKFG--QAVELFDDMVAR-----------GYQPDVHT 229

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G+      LF +M E G +PDV+TY+ +I    +  R +  + +   + 
Sbjct: 230 YTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMK 289

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ SL+     F     A  ++  M     ++   I    L       EG+
Sbjct: 290 AKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMS--LNIMPNIVTFSLLINIFCKEGN 347

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   V + +    +              PN   Y++LM GY  +  V +  ++   M 
Sbjct: 348 VFEARGVLKTMTEMGVE-------------PNVVTYSSLMNGYSLQAEVVEARKLFDVMI 394

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD  +Y  +++   KA  +  A+Q+  EM   G+  + ++YN L+ G CQ  
Sbjct: 395 TK---GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 451

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +A +L + M  +  + PD+ +Y+IL+DGF      A A   F  M++  + P  + Y
Sbjct: 452 RLREAHDLFKNMLTNGNL-PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMY 510

Query: 361 TTLMKAFALSSQPKLANKVFDEML---RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             L+ A   S   K A K+F E+      P V++    +  ++ G C+ GL++EA     
Sbjct: 511 NILIDAMCKSRNLKEARKLFSELFVQGLQPNVQI----YTTIINGLCKEGLLDEALEAFR 566

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            M+E+G  PN  +Y  +  G    +    A+ L  E++E+
Sbjct: 567 NMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREK 606



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 18/205 (8%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGA-LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
           K  P ++ +N L+   + +     A ++   +M   G++P   +   L+  F    +  L
Sbjct: 116 KPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDL 175

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
              V  ++++   +++ IV +N L+ G C++G   +A  + + M   G+ P+V TY ++ 
Sbjct: 176 GFSVLAKIIK-LGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTII 234

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           NG+    +   A  L++++ E                   +PD      + D   +    
Sbjct: 235 NGLCKIGETVAAAGLFRKMGE----------------AGCQPDVVTYSTIIDSLCKDRRV 278

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            +AL+I + M+  GI PN   Y  +
Sbjct: 279 NEALDIFSYMKAKGISPNIFTYNSL 303


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/501 (24%), Positives = 218/501 (43%), Gaps = 69/501 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           P    YN +++     G+ +  L L+D M   FG +P V+TY+ +I    R         
Sbjct: 63  PTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCK 122

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +LE +   G      T+ +LV A +G G  + A ++++ M         I   L ++   
Sbjct: 123 LLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLC 182

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            E E             +  +     E  ++    +P+   + +++ G   E R+ D   
Sbjct: 183 KEGE-------------IEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHN 229

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +    +R  +    P+ VTY+T++  L K   MD A Q+LA+M  +G  AN +TY+ ++ 
Sbjct: 230 VF---KRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVD 286

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAG----------- 340
           G  +  +++ A  +LR+M  DA   PD V+YN LIDGF     + ++ G           
Sbjct: 287 GLLKVGRMEDAVVVLRQMR-DAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFH 345

Query: 341 ---------------------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
                                A+   + M ARG AP  I+Y++++     + +   A   
Sbjct: 346 PSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGY 405

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F++M RD  V   ++A++ L++G C+ G ++EA   +ERM   G  P+V T+  L NG+ 
Sbjct: 406 FEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLC 465

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
            A +    L L++ + ER  V                PD      L D   RA+   +A 
Sbjct: 466 DAGRIDTGLELFRGMAERGCV----------------PDMVTYATLVDRLCRASRVDEAF 509

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
           ++   M   G+ P+++  + +
Sbjct: 510 DLFQQMRSDGLSPDRSTRRTM 530



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 173/392 (44%), Gaps = 60/392 (15%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFL---QLFDQMHEFGAKPDVLTYNVMIKLCARA 106
           I S   PD   +N+VL+    L K ++ L    +F +  E G +P+V+TY+ +I   ++ 
Sbjct: 200 IESGLSPDVITFNSVLDG---LCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKM 256

Query: 107 SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
           ++    + +L +++E+G      T+ ++V   +  G +E A  +++ MR+          
Sbjct: 257 AKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDA--------- 307

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                                    LP+++                   Y TL+ G+   
Sbjct: 308 -----------------------GCLPDAVT------------------YNTLIDGFFKR 326

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            R+ + V   G +R   +   HP  VTYTT+   L ++G  D A ++L  M   G   N 
Sbjct: 327 QRLREAV---GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNA 383

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           ITY+ ++ G C+  ++ +A     +MA D  + P V++Y+ LIDG         A  F  
Sbjct: 384 ITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLE 443

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M   G  P  ++++ L+     + +     ++F  M     V  D+V +  LV+  CR 
Sbjct: 444 RMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVP-DMVTYATLVDRLCRA 502

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
             V+EA  + ++M+ +G  P+ +T  ++ +G+
Sbjct: 503 SRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGL 534



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 173/393 (44%), Gaps = 53/393 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDT 58
           M+ SG  P V  +++V+        DG  +  ++ D   V KR        +    +P+ 
Sbjct: 199 MIESGLSPDVITFNSVL--------DGLCKEQRILDAHNVFKRA-------LERGCRPNV 243

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             Y+ +++  + + K  + LQL  +M E G + + +TY+ ++    +  R    V VL +
Sbjct: 244 VTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 303

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-------DLE 171
           + + G      T+ +L+  +                R+  R+   ++RE+        + 
Sbjct: 304 MRDAGCLPDAVTYNTLIDGFF--------------KRQRLREAVGLLREMLEAGFHPSVV 349

Query: 172 DYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
            Y++   G       DE  E L            +  +  APN+  Y++++ G    GRV
Sbjct: 350 TYTTLCHGLCRSGRFDEAVEIL----------DYMAARGCAPNAITYSSIVDGLCKAGRV 399

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           ++ +     M R E  A H   + Y+ ++  L KAG +D A + L  M R G   + +T+
Sbjct: 400 TEALGYFEKMARDEVVAPHV--IAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTF 457

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           +IL+ G C   +ID   EL R MA+   + PD+V+Y  L+D          A   F +MR
Sbjct: 458 SILINGLCDAGRIDTGLELFRGMAERGCV-PDMVTYATLVDRLCRASRVDEAFDLFQQMR 516

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           + G++P + +  T++      ++ + A ++ DE
Sbjct: 517 SDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 19/279 (6%)

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           D A +PD VTY  ++  L K   +  A  +  E    G     +TYN ++ G C+  +I+
Sbjct: 23  DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIE 82

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            A  L  +MA      P VV+Y+ LIDG     +         EM  RG AP  ++Y TL
Sbjct: 83  NALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTL 142

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER--MKE 421
           + A     + K A  + ++M  +     +++ + ++++G C+ G +E A R+++   M E
Sbjct: 143 VNALLGQGRSKEAFSLLEQMAANG-CPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIE 201

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
           +G  P+V T+ S+ +G+   ++  +A  ++K   ER               P +     L
Sbjct: 202 SGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER------------GCRPNVVTYSTL 249

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +D L+    + A   +AL+++A M E G   N   Y  +
Sbjct: 250 IDGLS----KMAKMDEALQLLAKMVELGCRANTVTYSTV 284



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 37/59 (62%)

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +++G C+   V++A  + ++M +   YP+V TYG+L +G+   R+  EA  L++E + +
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 211/456 (46%), Gaps = 33/456 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ GY P+   +ST+++ L   G     E+++L D +V+              KPD   
Sbjct: 247 IIKLGYEPNTITFSTLINGLCLEGR--VSEALELVDRMVEM-----------GHKPDLIT 293

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++N     GK  + + L D+M E+G +P+ +TY  ++ +  ++ +  L + +L ++ 
Sbjct: 294 INTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME 353

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I L    +  ++      G L+ A  +   M         I   + +  +   N G 
Sbjct: 354 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC--NAGR 411

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD  ++   ++   INP             N   ++ L+  ++ EG++ +   +   M 
Sbjct: 412 WDDGAKLLRDMIKRKINP-------------NVVTFSVLIDSFVKEGKLREAEELHKEMI 458

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD +TYT+++    K   +D+A Q++  M   G   N  T+NIL+ GYC+  
Sbjct: 459 HR---GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 515

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID   EL R+M+    +  D V+YN LI GF  +     A   F EM +R + P  ++Y
Sbjct: 516 RIDDGLELFRKMSLRGVV-ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 574

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+     + + + A ++F E +   ++++DI  +N+++ G C    V++A  +   + 
Sbjct: 575 KILLDGLCDNGESEKALEIF-EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 633

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             G  P V TY  +  G+       EA LL+++++E
Sbjct: 634 LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 669



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 199/455 (43%), Gaps = 42/455 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ + +A A   +    L L  QM   G   ++ T ++MI    R  +  L    
Sbjct: 184 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 243

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           + +I+++G      TF +L+      G +  A  +V  M E       +  + DL   ++
Sbjct: 244 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE-------MGHKPDLITINT 296

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G      E    LL +         ++     PN+  Y  ++      G+ +  + +
Sbjct: 297 LVNGLCLSGKEAEAMLLIDK--------MVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 348

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R+ E+     D V Y+ ++  L K GS+D A  +  EM   G+  N ITYNIL+ G
Sbjct: 349 L---RKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 405

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   + D   +LLR+M    KI P+VV++++LID F+       A     EM  RGIAP
Sbjct: 406 FCNAGRWDDGAKLLRDMI-KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 464

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             I+YT+L+  F   +    AN++ D M+    DP ++     +N+L+ GYC+   +++ 
Sbjct: 465 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIR----TFNILINGYCKANRIDDG 520

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             +  +M   G   +  TY +L  G     K   A  L++E+  R             +P
Sbjct: 521 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR------------KVP 568

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           P +   + LLD L D         KALEI   +E+
Sbjct: 569 PNIVTYKILLDGLCD----NGESEKALEIFEKIEK 599



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 18/268 (6%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           T + +++   +   +  A   + ++ ++G   N IT++ L+ G C + ++ +A EL+  M
Sbjct: 223 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 282

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            +    +PD+++ N L++G  L    A A+   ++M   G  P  ++Y  ++     S Q
Sbjct: 283 VEMGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 341

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
             LA ++  +M  +  +K+D V ++++++G C+ G ++ A  +   M+  G   N+ TY 
Sbjct: 342 TALAMELLRKM-EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYN 400

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            L  G   A +  +   L +++ +R                 + P+      L D  V+ 
Sbjct: 401 ILIGGFCNAGRWDDGAKLLRDMIKR----------------KINPNVVTFSVLIDSFVKE 444

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R+A E+   M   GI P+   Y  +
Sbjct: 445 GKLREAEELHKEMIHRGIAPDTITYTSL 472



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 115/299 (38%), Gaps = 54/299 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  Y ++++         K  Q+ D M   G  P++ T+N++I    +A+R    + +
Sbjct: 464 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 523

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             ++   G+     T+ +L+  +   G L +A+ + Q M                     
Sbjct: 524 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM--------------------- 562

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                        + +   PN   Y  L+ G  + G   ++ + 
Sbjct: 563 -----------------------------VSRKVPPNIVTYKILLDGLCDNG---ESEKA 590

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    + E +    D   Y  ++  +  A  +D A  +   +   GV     TYNI++ G
Sbjct: 591 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGG 650

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            C++  + +A+ L R+M +D    PD  +YNILI   +   D+  ++    E++  G +
Sbjct: 651 LCKKGPLSEAELLFRKMEEDGH-APDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 708



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 101/234 (43%), Gaps = 18/234 (7%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           ++Y   L+     ++ D A +L R+M     + P V+ ++ L             L    
Sbjct: 152 LSYRERLRSGLVDIKADDAIDLFRDMIHSRPL-PTVIDFSRLFSAIAKTKQYDLVLALCK 210

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +M  +GIA    + + ++  F    +  LA     ++++    + + + ++ L+ G C  
Sbjct: 211 QMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIK-LGYEPNTITFSTLINGLCLE 269

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G V EA  +++RM E G  P++ T  +L NG+ L+ K  EA+LL  ++ E          
Sbjct: 270 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEY--------- 320

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    +P+      + ++  ++     A+E++  MEE  I  +  KY  I
Sbjct: 321 -------GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 367


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 211/466 (45%), Gaps = 39/466 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD    +++LN   +  +    + L DQM E G KPD  T+  +I      ++    V 
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++++++ G    + T+ ++V      GD+++A  ++  M   R     +I    ++   
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC 269

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                +   D  +F ++    I P             N   Y +L+    N GR SD  R
Sbjct: 270 KYRHVEVAVD--LFTEMETKGIRP-------------NVVTYNSLINCLCNYGRWSDASR 314

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT+  ++ A  K G +  A ++  EM +  +  + ITYN+L+ 
Sbjct: 315 LLSNMLEKKIN---PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLIN 371

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++D+AK++ + M     + P++ +YN LI+GF         +  F EM  RG+ 
Sbjct: 372 GFCMHNRLDEAKQMFKFMVSKDCL-PNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++YTT+++ F  +     A  VF +M+ + RV  DI+ +++L+ G C  G ++ A  
Sbjct: 431 GNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSN-RVPTDIMTYSILLHGLCSYGKLDTALV 489

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           I + ++++    N+  Y ++  G+  A K GEA  L+  +                    
Sbjct: 490 IFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL-------------------S 530

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +KPD    + +          ++A ++   M+E G  PN   Y  +
Sbjct: 531 IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTL 576



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 196/442 (44%), Gaps = 64/442 (14%)

Query: 21  AASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFL 78
           +ASGD   +   +L D+  V   V  F D  + S   P    +N +L+A A + K +  +
Sbjct: 45  SASGDYREILRNRLSDIIKVDDAVDLFGDM-VKSRPFPSIVEFNKLLSAVAKMNKFELVI 103

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
            L +QM   G   D+ TY++ I    R S+  L + VL +++++G    + T  SL+  Y
Sbjct: 104 SLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGY 163

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
                +  A  +V  M E                                          
Sbjct: 164 CHSKRISDAVALVDQMVE------------------------------------------ 181

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                     + P++  +TTL+ G     + S+ V ++  M ++      PD VTY TVV
Sbjct: 182 --------MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR---GCQPDLVTYGTVV 230

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + L K G +D A  +L +M    + AN + +N ++   C+   ++ A +L  EM +   I
Sbjct: 231 NGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM-ETKGI 289

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            P+VV+YN LI+        + A    + M  + I P  +++  L+ AF    +   A K
Sbjct: 290 RPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEK 349

Query: 379 VFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           + +EM++   DP    D + +N+L+ G+C    ++EAK++ + M      PN+ TY +L 
Sbjct: 350 LHEEMIQRSIDP----DTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLI 405

Query: 436 NGISLARKPGEALLLWKEIKER 457
           NG    ++  + + L++E+ +R
Sbjct: 406 NGFCKCKRVEDGVELFREMSQR 427



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 174/434 (40%), Gaps = 71/434 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P +  + TVV+ L   GD          D+ +  + K     I    K +   
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGD---------IDLALNLLNKMEAARI----KANVVI 260

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++++       +  + LF +M   G +P+V+TYN +I       R      +L  +L
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I   + TF +L+ A+   G L  AE + + M +   D   I   L +  +   N  D
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           +      F               ++ K   PN + Y TL+ G+    RV D V +    R
Sbjct: 381 EAKQMFKF---------------MVSKDCLPNIQTYNTLINGFCKCKRVEDGVELF---R 422

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                    + VTYTT++    +AG  D A+ V  +M    VP + +TY+ILL G C   
Sbjct: 423 EMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYG 482

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D A  + + +   +++E ++  YN +I+G         A   F  +    I P  ++Y
Sbjct: 483 KLDTALVIFKYL-QKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTY 538

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
                                               N ++ G C   L++EA  +  +MK
Sbjct: 539 ------------------------------------NTMISGLCSKRLLQEADDLFRKMK 562

Query: 421 ENGFYPNVATYGSL 434
           E+G  PN  TY +L
Sbjct: 563 EDGTLPNSGTYNTL 576



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 27/243 (11%)

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
           +++D A +L  +M   ++  P +V +N L+     ++     ++   +M+  GI+    +
Sbjct: 62  IKVDDAVDLFGDMVK-SRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYT 120

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           Y+  +  F   SQ  LA  V  +M++   +P    DIV  + L+ GYC    + +A  ++
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEP----DIVTLSSLLNGYCHSKRISDAVALV 176

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CE---------VKKEGVN 466
           ++M E G+ P+  T+ +L +G+ L  K  EA+ L  ++ +R C+         V      
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236

Query: 467 ADSDLPPPL---------KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            D DL   L         K +  + + + D   +      A+++   ME  GI PN   Y
Sbjct: 237 GDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY 296

Query: 518 KKI 520
             +
Sbjct: 297 NSL 299



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 37/334 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML     P+V  ++ ++      G    VE+ KL + +++R              PDT  
Sbjct: 319 MLEKKINPNVVTFNALIDAFFKEGK--LVEAEKLHEEMIQR-----------SIDPDTIT 365

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N      +  +  Q+F  M      P++ TYN +I    +  R    V +   + 
Sbjct: 366 YNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ +++  +   GD + A+ + + M   R     +   + L    S   G 
Sbjct: 426 QRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSY--GK 483

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D    +F+ L        SE  L       N  IY T+++G    G+V +   +  ++ 
Sbjct: 484 LDTALVIFKYL------QKSEMEL-------NIFIYNTMIEGMCKAGKVGEAWDLFCSL- 529

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                +  PD VTY T++S L     +  A  +  +M   G   N  TYN L++   +  
Sbjct: 530 -----SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDC 584

Query: 301 QIDKAKELLREMADDAKI-EPDVVSY--NILIDG 331
               + EL++EM     + +   +S   N+L DG
Sbjct: 585 DRAASAELIKEMRSSGFVGDASTISLVTNMLHDG 618


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 199/434 (45%), Gaps = 49/434 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PDT  ++ ++N     G+  + L+L D+M E G KP ++T N ++       +    V 
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R++E G      T+  ++      G   +A  +++ M E  R +     +LD   YS
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE--RKI-----KLDAVKYS 251

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G   D        L N+ N  +E  +  K F  +  IYTTL++G+   GR  D  +
Sbjct: 252 IIIDGLCKDGS------LDNAFNLFNEMEI--KGFKADIIIYTTLIRGFCYAGRWDDGAK 303

Query: 235 ML-------------------------GAMRRQED-------NASHPDHVTYTTVVSALV 262
           +L                         G +R  E+           PD VTYT+++    
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           K   +D+A  +L  M   G   N  T+NIL+ GYC+   ID   EL R+M+    +  D 
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVV-ADT 422

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           V+YN LI GF  +     A   F EM +R + P  +SY  L+     + +P+ A ++F E
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF-E 481

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            +   ++++DI  +N+++ G C    V++A  +   +   G  P+V TY  +  G+    
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541

Query: 443 KPGEALLLWKEIKE 456
              EA LL+++++E
Sbjct: 542 SLSEADLLFRKMEE 555



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 44/309 (14%)

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
           S+  S+   ++   + P++  ++TL+ G   EGRVS+ + ++    R  +    P  +T 
Sbjct: 124 SLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVD---RMVEMGHKPTLITL 180

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
             +V+ L   G +  A  ++  M   G   N +TY  +LK  C+  Q   A ELLR+M +
Sbjct: 181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM-E 239

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           + KI+ D V Y+I+IDG         A   FNEM  +G     I YTTL++ F  + +  
Sbjct: 240 ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWD 299

Query: 375 LANKVFDEMLR--------------DPRVKV--------------------DIVAWNMLV 400
              K+  +M++              D  VK                     D V +  L+
Sbjct: 300 DGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +G+C+   +++A  +++ M   G  PN+ T+  L NG   A    + L L++++  R   
Sbjct: 360 DGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR--- 416

Query: 461 KKEGVNADS 469
              GV AD+
Sbjct: 417 ---GVVADT 422



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 2/190 (1%)

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           D A  +  EMTR       I ++ L     +  Q D   +L ++M +   I  ++ + +I
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQM-ELKGIAHNLYTLSI 112

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           +I+        + A +   ++   G  P  ++++TL+    L  +   A ++ D M+   
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
             K  ++  N LV G C  G V +A  +I+RM E GF PN  TYG +   +  + +   A
Sbjct: 173 H-KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 448 LLLWKEIKER 457
           + L ++++ER
Sbjct: 232 MELLRKMEER 241


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 181/402 (45%), Gaps = 20/402 (4%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD  +Y+ V+N     G+  K  +L ++M + G KP+  TY  +I L  R  +       
Sbjct: 702  PDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEA 761

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
               ++  GI      + +LV  +   GD+  A      M    RD+       D+  Y++
Sbjct: 762  FSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHS--RDITP-----DVLTYTA 814

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               G     D V    L +         +L +   P+   +T LM GY   G + D  R+
Sbjct: 815  IISGFCQIGDMVEAGKLFHE--------MLCRGLEPDIITFTELMNGYCKAGHIKDAFRV 866

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               M +       P+ VTYTT++  L K G +D A ++L EM +IG+  N  TYN ++ G
Sbjct: 867  HNHMIQA---GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 923

Query: 296  YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             C+   I++A +L+ E  + A +  D V+Y  L+D +    +   A     EM  +G+ P
Sbjct: 924  LCKSGNIEEAVKLVGEF-EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQP 982

Query: 356  TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            T +++  LM  F L    +   K+ + ML    +  +   +N LV+ YC    ++ A  I
Sbjct: 983  TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNCLVKQYCIRNNLKAATAI 1041

Query: 416  IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + M   G  P+  TY +L  G   AR   EA  L++E+K +
Sbjct: 1042 YKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGK 1083



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 219/473 (46%), Gaps = 51/473 (10%)

Query: 5    GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
            GY P V ++STV++     G+          D V K + K     +    KP++  Y ++
Sbjct: 699  GYTPDVISYSTVINGYCRFGE---------LDKVWKLIEKMKQKGL----KPNSYTYGSI 745

Query: 65   LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
            +     + K  +  + F +M   G  PD + Y  ++   C R   +    F  E +    
Sbjct: 746  IGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYE-MHSRD 804

Query: 124  ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK-----IIRELDLEDYSSENE 178
            IT  + T+ ++++ +   GD+  A  +   M      +C+     II   +L +   +  
Sbjct: 805  ITPDVLTYTAIISGFCQIGDMVEAGKLFHEM------LCRGLEPDIITFTELMNGYCK-A 857

Query: 179  GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            G   D   V   ++                 +PN   YTTL+ G   EG +     +L  
Sbjct: 858  GHIKDAFRVHNHMIQAGC-------------SPNVVTYTTLIDGLCKEGDLDSANELLHE 904

Query: 239  MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            M +       P+  TY ++V+ L K+G+++ A +++ E    G+ A+ +TY  L+  YC+
Sbjct: 905  MWKI---GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 961

Query: 299  QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
              ++DKA+E+L EM     ++P +V++N+L++GF L           N M A+GIAP   
Sbjct: 962  SGEMDKAQEILTEMLGKG-LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 1020

Query: 359  SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            ++  L+K + + +  K A  ++ +M     V+ D   +  LV+G+C    ++EA  + + 
Sbjct: 1021 TFNCLVKQYCIRNNLKAATAIYKDMCSR-GVEPDGKTYENLVKGHCNARNMKEAWFLFQE 1079

Query: 419  MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
            MK  GF  +V+TY  L  G    +K  EA    +EI +  +++++G+ AD ++
Sbjct: 1080 MKGKGFSVSVSTYSVLIKGFFKRKKFVEA----REIFD--QMRRDGLAADKEI 1126



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 185/401 (46%), Gaps = 31/401 (7%)

Query: 80   LFDQMHEFGAKPDVLTYNVMIKLCARASR---KHLLVFVLERILEMGITLCMTTFQSLVA 136
            +F +  E G   +V +YN++I    +  R    H L+ ++E     G T  + ++ +++ 
Sbjct: 656  VFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMEL---KGYTPDVISYSTVIN 712

Query: 137  AYVGFGDLEIAETIVQAMRE-GRRD-----------VCKIIRELDLEDYSSENEGDDDDD 184
             Y  FG+L+    +++ M++ G +            +C+I +  + E+  SE  G     
Sbjct: 713  GYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILP 772

Query: 185  DEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLMKGYMNEGRVSDTVRML 236
            D +    L +      +     K F         P+   YT ++ G+   G + +  ++ 
Sbjct: 773  DTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 832

Query: 237  GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              M  +      PD +T+T +++   KAG +  A +V   M + G   N +TY  L+ G 
Sbjct: 833  HEMLCR---GLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 889

Query: 297  CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            C++  +D A ELL EM     ++P++ +YN +++G     +   A+    E  A G+   
Sbjct: 890  CKEGDLDSANELLHEMWKIG-LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 948

Query: 357  KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             ++YTTLM A+  S +   A ++  EML    ++  IV +N+L+ G+C  G++E+ ++++
Sbjct: 949  TVTYTTLMDAYCKSGEMDKAQEILTEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1007

Query: 417  ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              M   G  PN  T+  L     +      A  ++K++  R
Sbjct: 1008 NWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSR 1048



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 182/424 (42%), Gaps = 68/424 (16%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M+  G LP    ++T+V      GD             ++   KF       D  PD   
Sbjct: 765  MIGQGILPDTIVYTTLVDGFCKRGD-------------IRAASKFFYEMHSRDITPDVLT 811

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            Y A+++    +G   +  +LF +M   G +PD++T+  ++    +A        V   ++
Sbjct: 812  YTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMI 871

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            + G +  + T+ +L+                         +CK              EGD
Sbjct: 872  QAGCSPNVVTYTTLIDG-----------------------LCK--------------EGD 894

Query: 181  DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D  +E+  ++    +              PN   Y +++ G    G + + V+++G   
Sbjct: 895  LDSANELLHEMWKIGLQ-------------PNIFTYNSIVNGLCKSGNIEEAVKLVGEFE 941

Query: 241  RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                NA   D VTYTT++ A  K+G MD+A+++L EM   G+    +T+N+L+ G+C   
Sbjct: 942  AAGLNA---DTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHG 998

Query: 301  QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
             ++  ++LL  M     I P+  ++N L+  + + ++   A   + +M +RG+ P   +Y
Sbjct: 999  MLEDGEKLLNWMLAKG-IAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTY 1057

Query: 361  TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              L+K    +   K A  +F EM +     V +  +++L++G+ +     EA+ I ++M+
Sbjct: 1058 ENLVKGHCNARNMKEAWFLFQEM-KGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMR 1116

Query: 421  ENGF 424
             +G 
Sbjct: 1117 RDGL 1120


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 199/434 (45%), Gaps = 49/434 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PDT  ++ ++N     G+  + L+L D+M E G KP ++T N ++       +    V 
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R++E G      T+  ++      G   +A  +++ M E  R +     +LD   YS
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE--RKI-----KLDAVKYS 251

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G   D        L N+ N  +E  +  K F  +  IYTTL++G+   GR  D  +
Sbjct: 252 IIIDGLCKDGS------LDNAFNLFNEMEI--KGFKADIIIYTTLIRGFCYAGRWDDGAK 303

Query: 235 ML-------------------------GAMRRQED-------NASHPDHVTYTTVVSALV 262
           +L                         G +R  E+           PD VTYT+++    
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           K   +D+A  +L  M   G   N  T+NIL+ GYC+   ID   EL R+M+    +  D 
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVV-ADT 422

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           V+YN LI GF  +     A   F EM +R + P  +SY  L+     + +P+ A ++F E
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF-E 481

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            +   ++++DI  +N+++ G C    V++A  +   +   G  P+V TY  +  G+    
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541

Query: 443 KPGEALLLWKEIKE 456
              EA LL+++++E
Sbjct: 542 SLSEADLLFRKMEE 555



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 44/309 (14%)

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
           S+  S+   ++   + P++  ++TL+ G   EGRVS+ + ++    R  +    P  +T 
Sbjct: 124 SLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVD---RMVEMGHKPTLITL 180

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
             +V+ L   G +  A  ++  M   G   N +TY  +LK  C+  Q   A ELLR+M +
Sbjct: 181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM-E 239

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           + KI+ D V Y+I+IDG         A   FNEM  +G     I YTTL++ F  + +  
Sbjct: 240 ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWD 299

Query: 375 LANKVFDEMLR--------------DPRVKV--------------------DIVAWNMLV 400
              K+  +M++              D  VK                     D V +  L+
Sbjct: 300 DGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +G+C+   +++A  +++ M   G  PN+ T+  L NG   A    + L L++++  R   
Sbjct: 360 DGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR--- 416

Query: 461 KKEGVNADS 469
              GV AD+
Sbjct: 417 ---GVVADT 422



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 174/403 (43%), Gaps = 37/403 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  Y ++++      +  K   + D M   G  P++ T+N++I    +A+     + +
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             ++   G+     T+ +L+  +   G LE+A+ + Q M   RR    I+    L D   
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVS-RRVRPDIVSYKILLDGLC 468

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +N G+ +   E+FEK+  + +               +  IY  ++ G  N  +V D   +
Sbjct: 469 DN-GEPEKALEIFEKIEKSKMEL-------------DIGIYNIIIHGMCNASKVDDAWDL 514

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
             ++  +      PD  TY  ++  L K GS+  A  +  +M   G   N  TYNIL++ 
Sbjct: 515 FCSLPLK---GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571

Query: 296 YCQQLQIDKAKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           +  +    K+ +L+ E+      ++   + +               AL+    M   G  
Sbjct: 572 HLGEGDATKSAKLIEEIKRCGFSVDASTLRF---------------ALSTLARMLKAGHE 616

Query: 355 PTKISYTTLMKAFALSSQPKL--ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           P   ++TTL++ F L     +  A  +F  M +    K ++V +N +++G     ++ + 
Sbjct: 617 PDVFTFTTLLRPFCLEENASVYDAPTLFKNM-KAMGYKPNVVTYNTVIKGLLNGNMISQV 675

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             ++++M E G  PN  T  +  +G+      G A+LL ++++
Sbjct: 676 PGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKME 718



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 128/312 (41%), Gaps = 50/312 (16%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P + ++  ++  L  +G+  P +++++F+ + K           S  + D   YN +++ 
Sbjct: 455 PDIVSYKILLDGLCDNGE--PEKALEIFEKIEK-----------SKMELDIGIYNIIIHG 501

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHL-LVFVLERILEMGIT 125
             N  K      LF  +   G KPDV TYN+MI  LC + S     L+F   ++ E G +
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLF--RKMEEDGHS 559

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
               T+  L+ A++G GD   +  +++ ++     V                      D 
Sbjct: 560 PNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSV----------------------DA 597

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE--GRVSDTVRMLGAMRRQE 243
                 L      S+   +L     P+   +TTL++ +  E    V D   +   M+   
Sbjct: 598 STLRFAL------STLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAM- 650

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P+ VTY TV+  L+    + +   VL +M   G   N +T +  + G C+Q    
Sbjct: 651 --GYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHG 708

Query: 304 KAKELLREMADD 315
            A  LLR+M +D
Sbjct: 709 SAILLLRKMEND 720



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 2/190 (1%)

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           D A  +  EMTR       I ++ L     +  Q D   +L ++M +   I  ++ + +I
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQM-ELKGIAHNLYTLSI 112

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           +I+        + A +   ++   G  P  ++++TL+    L  +   A ++ D M+   
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
             K  ++  N LV G C  G V +A  +I+RM E GF PN  TYG +   +  + +   A
Sbjct: 173 H-KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 448 LLLWKEIKER 457
           + L ++++ER
Sbjct: 232 MELLRKMEER 241


>gi|326522078|dbj|BAK04167.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 416

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 176/348 (50%), Gaps = 30/348 (8%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-----DHVTYTTVVSALVKAGSMDRA 270
           YT + + +++ GR+ +  +++   + QE  ++H      D V +  VV+A V  G +++A
Sbjct: 92  YTEVAQCFVDNGRIRELAQLI--FQAQEIESTHQLLVVDDSVGFG-VVNACVGLGLLNKA 148

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L EMT  G       Y+ +LK YC++ +  +A +L+ E+ + A ++ D  SY+ LID
Sbjct: 149 HSILDEMTAQGASVGLAIYSPILKAYCKEQKTAEAAQLVAEI-NAAGLQLDAGSYDALID 207

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
             +   D   A   F +MR   +   + SY T+M     +++P+L     D ++ DPR++
Sbjct: 208 ASMTAHDFQSAFALFKDMREARLPDLRTSYLTIMTGLTENNRPELMASFLDAVVDDPRIE 267

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           +    WN ++  +C++G +E+A+R   RM    + PN  TY SL NG   A K    L+L
Sbjct: 268 IATHDWNSIIHAFCKVGRLEDARRTYRRMLFLLYEPNNQTYLSLINGYLSAEKYFYVLIL 327

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           W E++ +         AD         + EL+DA     V+  FF  A++++   +E  I
Sbjct: 328 WTEVRRK--------GADF--------NHELIDAFLHALVKGGFFDMAMQVIEKAQESKI 371

Query: 511 PPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558
             +K ++K+ ++E H ++  +K      + R   +  A  AFK W GL
Sbjct: 372 FVDKWRHKQAFMETHKKLKVAK-----LRKRNFRKMEALIAFKNWAGL 414



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 100/247 (40%), Gaps = 26/247 (10%)

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            V+NAC  LG   K   + D+M   GA   +  Y+ ++K   +  +      ++  I   
Sbjct: 134 GVVNACVGLGLLNKAHSILDEMTAQGASVGLAIYSPILKAYCKEQKTAEAAQLVAEINAA 193

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD-- 180
           G+ L   ++ +L+ A +   D + A  + + MRE R    +      +   +  N  +  
Sbjct: 194 GLQLDAGSYDALIDASMTAHDFQSAFALFKDMREARLPDLRTSYLTIMTGLTENNRPELM 253

Query: 181 --------DDDDDEVFEKLLPNSINPSSEPP-----------LLPKTFAPNSRIYTTLMK 221
                   DD   E+      + I+   +             +L   + PN++ Y +L+ 
Sbjct: 254 ASFLDAVVDDPRIEIATHDWNSIIHAFCKVGRLEDARRTYRRMLFLLYEPNNQTYLSLIN 313

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL--AEMTR 279
           GY++  +    + +   +RR+    +  +H      + ALVK G  D A QV+  A+ ++
Sbjct: 314 GYLSAEKYFYVLILWTEVRRK---GADFNHELIDAFLHALVKGGFFDMAMQVIEKAQESK 370

Query: 280 IGVPANR 286
           I V   R
Sbjct: 371 IFVDKWR 377


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 198/442 (44%), Gaps = 64/442 (14%)

Query: 21  AASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFL 78
           +ASGD   +   +L D+  V   V  F D  + S   P    +N +L+A A + K +  +
Sbjct: 45  SASGDYREILRNRLSDIIKVDDAVDLFGDM-VKSRPFPSIVEFNKLLSAVAKMNKFELVI 103

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
            L +QM   G   D+ TY++ I    R S+  L + VL +++++G    + T  SL+  Y
Sbjct: 104 SLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGY 163

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
                +  A  +V  M E                                          
Sbjct: 164 CHSKRISDAVALVDQMVE------------------------------------------ 181

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                     + P++  +TTL+ G     + S+ V ++  M ++      PD VTY TVV
Sbjct: 182 --------MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR---GCQPDLVTYGTVV 230

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + L K G +D A  +L +M +  + A+ + YN ++ G C+   +D A  L  EM D+  I
Sbjct: 231 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM-DNKGI 289

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            PDV +Y+ LI         + A    ++M  R I P  ++++ L+ AF    +   A K
Sbjct: 290 RPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 349

Query: 379 VFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           ++DEM++   DP    DI  ++ L+ G+C    ++EAK + E M     +PNV TY +L 
Sbjct: 350 LYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLI 405

Query: 436 NGISLARKPGEALLLWKEIKER 457
            G   A++  E + L++E+ +R
Sbjct: 406 KGFCKAKRVEEGMELFREMSQR 427



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 196/436 (44%), Gaps = 53/436 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD    +++LN   +  +    + L DQM E G KPD  T+  +I      ++    V 
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++++++ G    + T+ ++V      GD+++A ++++ M +G+ +   +I    ++   
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 269

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                DD             ++N  +E  +  K   P+   Y++L+    N GR SD  R
Sbjct: 270 KYKHMDD-------------ALNLFTE--MDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT++ ++ A VK G +  A ++  EM +  +  +  TY+ L+ 
Sbjct: 315 LLSDMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++D+AK +  E+       P+VV+Y+ LI GF         +  F EM  RG+ 
Sbjct: 372 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLV 430

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM------------------------------- 383
              ++YTTL+  F  +     A  VF +M                               
Sbjct: 431 GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVV 490

Query: 384 ---LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
              L+   ++ DI  +N+++EG C+ G VE+   +   +   G  PNV  Y ++ +G   
Sbjct: 491 FEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCR 550

Query: 441 ARKPGEALLLWKEIKE 456
                EA  L K++KE
Sbjct: 551 KGSKEEADSLLKKMKE 566



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 192/441 (43%), Gaps = 43/441 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P +  + TVV+ L   GD          D+ +  ++K     I    + D   
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGD---------IDLALSLLKKMEKGKI----EADVVI 260

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++           L LF +M   G +PDV TY+ +I       R      +L  ++
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G L  AE +   M +   D        D+  YSS   G 
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-------DIFTYSSLINGF 373

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D+   +FE              ++ K   PN   Y+TL+KG+    RV + + +
Sbjct: 374 CMHDRLDEAKHMFE-------------LMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         + VTYTT++    +A   D A+ V  +M  +GV  N +TYNILL G
Sbjct: 421 F---REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDG 477

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  ++ KA  ++ E    + +EPD+ +YNI+I+G             F  +  +G++P
Sbjct: 478 LCKNGKLAKAM-VVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSP 536

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y T++  F      + A+ +  +M  D  +  +   +N L+    R G  E +  +
Sbjct: 537 NVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLP-NSGTYNTLIRARLRDGDREASAEL 595

Query: 416 IERMKENGFYPNVATYGSLAN 436
           I+ M+  GF  + +T G + N
Sbjct: 596 IKEMRSCGFAGDASTIGLVTN 616


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 208/457 (45%), Gaps = 34/457 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V  +S ++  L  SG+  P ++  L + +  +             KP+   
Sbjct: 445 MENAGISPNVYTYSIMIHGLCQSGE--PEKASDLLEEMTTK-----------GLKPNAFV 491

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++     G      ++FD+M +    PD+  YN +I   ++  R         ++ 
Sbjct: 492 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ 551

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+     T+  L+  Y+  GDLE AE +VQ M +       +I    LE Y       
Sbjct: 552 ERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS---- 607

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD ++V           S+   +L +    ++RIY  L+    + G +    R+L  + 
Sbjct: 608 -DDIEKV----------SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGI- 655

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E N S PD   Y++++S L K    ++A  +L EM++ GV  N + YN L+ G C+  
Sbjct: 656 --EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 713

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            I  A+ +   +     + P+ V+Y  LIDG   + D + A   +NEM A GI P    Y
Sbjct: 714 DISYARNVFNSILAKGLV-PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVY 772

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L    + +   + A  + +EM    R    I ++N LV+G+C+ G ++E  +++  + 
Sbjct: 773 SVLTTGCSSAGDLEQAMFLIEEMFL--RGHASISSFNNLVDGFCKRGKMQETLKLLHVIM 830

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             G  PN  T  ++ +G+S A K  E   ++ E++++
Sbjct: 831 GRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 867



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 221/509 (43%), Gaps = 59/509 (11%)

Query: 37  VVVKRVRKFSDPDIV--------SDSKPDT-AAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           +++K +R +  P +V        SDS   + A  + +++     G+ +   ++   M + 
Sbjct: 144 LLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDR 203

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G  P +   N ++K   RA    LL  V E ++  GI+  + T+ +L+ AY    + + A
Sbjct: 204 GMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTA 263

Query: 148 ETIVQAMRE---GRRDVCK--IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202
           + ++  MRE   G   V    +I  L       E  G   D ++                
Sbjct: 264 KKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDY--------------- 308

Query: 203 PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
                   P+   Y  L+ G     R ++   +L  M   E     P+ V Y  ++   +
Sbjct: 309 -----GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE---LKPNVVVYANLIDGFM 360

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           + G+ D A +++ EM   GV  N+ITY+ L++G C+  Q+D+A  LL++M  D+   PD 
Sbjct: 361 REGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSH-RPDT 419

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           ++YN++I+G         A    +EM   GI+P   +Y+ ++     S +P+ A+ + +E
Sbjct: 420 ITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 479

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M     +K +   +  L+ GYCR G V  A  I ++M +    P++  Y SL  G+S   
Sbjct: 480 M-TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 538

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
           +  E+   + +++ER                 L P+E     L    ++      A ++V
Sbjct: 539 RVEESTKYFAQMQER----------------GLLPNEFTYSGLIHGYLKNGDLESAEQLV 582

Query: 503 ACMEEHGIPPNKTKYKKIYVEMHSRMFTS 531
             M + G+ PN      IY+++    F S
Sbjct: 583 QRMLDTGLKPNDV----IYIDLLESYFKS 607



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/453 (21%), Positives = 185/453 (40%), Gaps = 36/453 (7%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +  +P+   Y+ ++     +G+  +   L  QM     +PD +TYN++I+   R   K
Sbjct: 376 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK 435

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +L  +   GI+  + T+  ++      G+ E A  +++ M          +    
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +  Y    EG+     E+F+K+        ++  +LP  +  NS I+     G    GRV
Sbjct: 496 ISGYC--REGNVSLACEIFDKM--------TKVNVLPDLYCYNSLIF-----GLSKVGRV 540

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            ++ +    M   ++    P+  TY+ ++   +K G ++ A Q++  M   G+  N + Y
Sbjct: 541 EESTKYFAQM---QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 597

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
             LL+ Y +   I+K     + M D   +  + + Y ILI       +   A    + + 
Sbjct: 598 IDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI-YGILIHNLSSSGNMEAAFRVLSGIE 656

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G  P    Y++L+     ++  + A  + DEM +   V  +IV +N L++G C+ G +
Sbjct: 657 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKG-VDPNIVCYNALIDGLCKSGDI 715

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
             A+ +   +   G  PN  TY SL +G         A  L+ E+               
Sbjct: 716 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEM--------------- 760

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
            L   + PD  +   L   C  A    +A+ ++
Sbjct: 761 -LATGITPDAFVYSVLTTGCSSAGDLEQAMFLI 792



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 174/403 (43%), Gaps = 25/403 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y A++N      +  +   L D+M     KP+V+ Y  +I    R         +
Sbjct: 312 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 371

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRD---VCKIIRELDLE 171
           ++ ++  G+     T+ +LV      G ++ A  +++ M R+  R       +I E    
Sbjct: 372 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 431

Query: 172 DYS--------SENEGDDDDDDEVFEKLLPNSINPSSEP--------PLLPKTFAPNSRI 215
            +S        SE E      +     ++ + +  S EP         +  K   PN+ +
Sbjct: 432 HHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 491

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+ GY  EG VS    +   M +       PD   Y +++  L K G ++ + +  A
Sbjct: 492 YAPLISGYCREGNVSLACEIFDKMTKVN---VLPDLYCYNSLIFGLSKVGRVEESTKYFA 548

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M   G+  N  TY+ L+ GY +   ++ A++L++ M D   ++P+ V Y  L++ +   
Sbjct: 549 QMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTG-LKPNDVIYIDLLESYFKS 607

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           DD     + F  M  +G+      Y  L+   + S   + A +V   + ++  V  D+  
Sbjct: 608 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVP-DVHV 666

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           ++ L+ G C+    E+A  I++ M + G  PN+  Y +L +G+
Sbjct: 667 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 709



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 110/526 (20%), Positives = 212/526 (40%), Gaps = 61/526 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P V  +ST++              V+ FD   K + +  +         +T  
Sbjct: 235 MVGAGISPDVYTYSTLIEAYC---------KVREFDTAKKVLVEMRE----RGCGLNTVT 281

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++      G  ++       M ++G  PD  TY  +I    ++ R +    +L+ + 
Sbjct: 282 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 341

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEG 179
              +   +  + +L+  +               MREG  D   K+I+E+     ++  + 
Sbjct: 342 CAELKPNVVVYANLIDGF---------------MREGNADEAFKMIKEM----VAAGVQP 382

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFA-----PNSRIYTTLMKGYMNEGRVSDTVR 234
           +    D +   L    +       LL K        P++  Y  +++G+       D  R
Sbjct: 383 NKITYDNLVRGLC--KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 440

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M   E+    P+  TY+ ++  L ++G  ++A  +L EMT  G+  N   Y  L+ 
Sbjct: 441 LLSEM---ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 497

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++  +  A E+  +M     + PD+  YN LI G   +     +  +F +M+ RG+ 
Sbjct: 498 GYCREGNVSLACEIFDKMT-KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 556

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P + +Y+ L+  +  +   + A ++   ML D  +K + V +  L+E Y +   +E+   
Sbjct: 557 PNEFTYSGLIHGYLKNGDLESAEQLVQRML-DTGLKPNDVIYIDLLESYFKSDDIEKVSS 615

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
             + M + G   +   YG L + +S +     A  +   I++   V              
Sbjct: 616 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSV-------------- 661

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             PD  +  +L     + A   KA  I+  M + G+ PN   Y  +
Sbjct: 662 --PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 705



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/400 (19%), Positives = 150/400 (37%), Gaps = 86/400 (21%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           ++G +P V  +S+++S L  + D       K F ++ +  +K  DP+IV         YN
Sbjct: 657 KNGSVPDVHVYSSLISGLCKTAD-----REKAFGILDEMSKKGVDPNIV--------CYN 703

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A+++     G       +F+ +   G  P+ +TY  +I    +        ++   +L  
Sbjct: 704 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 763

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           GIT     +  L       GDLE      QAM         +I E+ L  ++S +     
Sbjct: 764 GITPDAFVYSVLTTGCSSAGDLE------QAMF--------LIEEMFLRGHASISS---- 805

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                                            +  L+ G+   G++ +T+++L  +  +
Sbjct: 806 ---------------------------------FNNLVDGFCKRGKMQETLKLLHVIMGR 832

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG---------------VPANRI 287
                 P+ +T   ++S L +AG +     +  E+ +                 +   +I
Sbjct: 833 ---GLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKI 889

Query: 288 TYNI---LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
             ++   +++ +C++  +DKA  +LR++           SY  ++D        + AL  
Sbjct: 890 PLDVVDDMIRDHCKEGNLDKAL-MLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNL 948

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
             EM  RGI P++     L+     S   +  N V D ML
Sbjct: 949 LKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNML 988


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 204/434 (47%), Gaps = 33/434 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ GY P    ++T++  L   G     E+V L D +V+           +  +PD   
Sbjct: 139 VMKLGYEPDTTTFNTLIKGLFLEGK--VSEAVVLVDRMVE-----------NGCQPDVVT 185

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++N     G     L L  +M E   K DV TY+ +I    R       + + + + 
Sbjct: 186 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME 245

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+ SLV      G       +++ M   R  V  +I    L D   + EG 
Sbjct: 246 TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM-VSREIVPNVITFNVLLDVFVK-EGK 303

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +E++++++   I             +PN   Y TLM GY  + R+S+   ML  M 
Sbjct: 304 LQEANELYKEMITRGI-------------SPNIITYNTLMDGYCMQNRLSEANNMLDLMV 350

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N   PD VT+T+++        +D   +V   +++ G+ AN +TY+IL++G+CQ  
Sbjct: 351 R---NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 407

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I  A+EL +EM     + PDV++Y IL+DG         AL  F +++   +    + Y
Sbjct: 408 KIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 466

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TT+++      + + A  +F   L    VK +++ + +++ G C+ G + EA  ++ +M+
Sbjct: 467 TTIIEGMCKGGKVEDAWNLFCS-LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 525

Query: 421 ENGFYPNVATYGSL 434
           E+G  PN  TY +L
Sbjct: 526 EDGNAPNDCTYNTL 539



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 124/532 (23%), Positives = 234/532 (43%), Gaps = 60/532 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RS  LP +  +S   S +A +         K F++V+   ++     I  +       
Sbjct: 69  MIRSRPLPSLVDFSRFFSAIART---------KQFNLVLDFCKQLELNGIAHN----IYT 115

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++N      K      +  ++ + G +PD  T+N +IK      +    V +++R++
Sbjct: 116 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 175

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
           E G    + T+ S+V      GD  +A  +++ M E  R+V     + D+  YS+     
Sbjct: 176 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE--RNV-----KADVFTYSTIIDSL 228

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G  D    +F+++    I  S                Y +L++G    G+ +D   +
Sbjct: 229 CRDGCIDAAISLFKEMETKGIKSSVVT-------------YNSLVRGLCKAGKWNDGALL 275

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  +E     P+ +T+  ++   VK G +  A ++  EM   G+  N ITYN L+ G
Sbjct: 276 LKDMVSRE---IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 332

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC Q ++ +A  +L  M  + K  PD+V++  LI G+ ++      +  F  +  RG+  
Sbjct: 333 YCMQNRLSEANNMLDLMVRN-KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVA 391

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y+ L++ F  S + KLA ++F EM+    V  D++ + +L++G C  G +E+A  I
Sbjct: 392 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALEI 450

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            E ++++     +  Y ++  G+    K  +A  L+      C +  +GV          
Sbjct: 451 FEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF------CSLPCKGV---------- 494

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           KP+      +     +     +A  ++  MEE G  PN   Y  + +  H R
Sbjct: 495 KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL-IRAHLR 545


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 130/549 (23%), Positives = 244/549 (44%), Gaps = 69/549 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD----DGPV-----ESVKLFDVVVK-------RVRK 44
           + R  + P    +  +V +L  +G     +G V     E  ++  VVV+       R+R+
Sbjct: 80  LAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRR 139

Query: 45  FSDP-DIVSDS--------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
           F D  D+V +         + DT  +N +LN      K K    ++++M   G +PDV+T
Sbjct: 140 FDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVT 199

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
            N +IK   RA +    V +LE +   G+    TTF +L+  ++  G +E A  +   M 
Sbjct: 200 LNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMM 259

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
           E       +   + +  Y     G  +D     ++ + +              F P+   
Sbjct: 260 EAGCSPTGVTVNVLINGYCK--MGRVEDALGYIQQEIADG-------------FEPDQVT 304

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y T + G    G VS  ++++  M ++      PD  TY TV++ L K G +D A+ ++ 
Sbjct: 305 YNTFVHGLCQNGHVSHALKVMDLMLQE---GHDPDVFTYNTVINCLSKNGELDEAKGIVN 361

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M   G   +  T+N L+     Q ++++A +L RE+     + PDV ++NILI+    +
Sbjct: 362 QMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKG-LSPDVYTFNILINALCKV 420

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK--VFDEMLRD--PRVKV 391
            D    +  F EM++ G  P +++Y  L+    L S  KL N   + +EM  +  PR   
Sbjct: 421 GDPHLGIRLFEEMKSSGCTPDEVTYNILID--HLCSMGKLGNALDLLNEMESNGCPR--- 475

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
             V +N +++  C+   +EEA+ + ++M   G   +  T+ +L +G+  A++  +A  L 
Sbjct: 476 STVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELI 535

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           +++       KEG          L+P+    +++     +    +KA +I+  M  +G  
Sbjct: 536 EQM------VKEG----------LQPNNITYNSILTHYCKQGNIKKAADILETMTANGFE 579

Query: 512 PNKTKYKKI 520
            +   Y  +
Sbjct: 580 IDVVTYGTL 588



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 178/436 (40%), Gaps = 76/436 (17%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           +I    +PD   YN  ++     G     L++ D M + G  PDV TYN +I   ++   
Sbjct: 293 EIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 352

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 ++ ++++ G     TTF +L+ A      LE              +   + REL
Sbjct: 353 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLE--------------EALDLAREL 398

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
            ++  S          D     +L N++    +P L  + F         P+   Y  L+
Sbjct: 399 TVKGLSP---------DVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILI 449

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA-------------------- 260
               + G++ + + +L  M   E N      VTY T++ A                    
Sbjct: 450 DHLCSMGKLGNALDLLNEM---ESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQ 506

Query: 261 ---------------LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
                          L KA  +D A +++ +M + G+  N ITYN +L  YC+Q  I KA
Sbjct: 507 GISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKA 566

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            ++L  M  +   E DVV+Y  LI+G      +  AL     MR +GI PT  +Y  +++
Sbjct: 567 ADILETMTANG-FEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQ 625

Query: 366 AFALSSQPKLANKVFDEM--LRDPRVKVDIVAWNMLVEGYCRMGL-VEEAKRIIERMKEN 422
           +    +  + A  +F EM  + +P    D + + ++    CR G  ++EA   +  M   
Sbjct: 626 SLFRRNNLRDALNLFREMTEVGEPP---DALTYKIVFRSLCRGGGPIKEAFDFLVEMVNK 682

Query: 423 GFYPNVATYGSLANGI 438
           GF P  +++  LA G+
Sbjct: 683 GFMPEFSSFRMLAEGL 698



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 176/426 (41%), Gaps = 54/426 (12%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSE-----------NE 178
           ++ +V      G  ++ E +V+ MR EG +    ++R   +E Y+             N+
Sbjct: 92  YEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSF-VESYARLRRFDDAVDLVLNQ 150

Query: 179 GDDDD-----DDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLMKGYMN 225
            D+D      D  VF  LL N +   S+  LL   +         P+     TL+K    
Sbjct: 151 LDNDTFGVQADTVVFNHLL-NVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCR 209

Query: 226 EGRVSDTVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
             +V   V ML      E+ +SH   PD  T+TT++   ++ GS++ A +V A+M   G 
Sbjct: 210 AHQVRTAVLML------EEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGC 263

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
               +T N+L+ GYC+  +++ A   +++   D   EPD V+YN  + G       + AL
Sbjct: 264 SPTGVTVNVLINGYCKMGRVEDALGYIQQEIADG-FEPDQVTYNTFVHGLCQNGHVSHAL 322

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
              + M   G  P   +Y T++   + + +   A  + ++M+ D     D   +N L+  
Sbjct: 323 KVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV-DRGCLPDTTTFNTLIVA 381

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
                 +EEA  +   +   G  P+V T+  L N +     P   + L++E+K       
Sbjct: 382 LSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKS------ 435

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
                         PDE   + L D          AL+++  ME +G P +   Y  I  
Sbjct: 436 ----------SGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIID 485

Query: 523 EMHSRM 528
            +  +M
Sbjct: 486 ALCKKM 491



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 191/453 (42%), Gaps = 52/453 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML+ G+ P V  ++TV++ L+ +G+          D     V +  D   +    PDT  
Sbjct: 328 MLQEGHDPDVFTYNTVINCLSKNGE---------LDEAKGIVNQMVDRGCL----PDTTT 374

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A ++  + ++ L L  ++   G  PDV T+N++I    +    HL + + E + 
Sbjct: 375 FNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK 434

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G T    T+  L+      G L  A  ++  M         +     ++    +    
Sbjct: 435 SSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMR-- 492

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            ++ +EVF+++    I+ S+               + TL+ G     R+ D   ++  M 
Sbjct: 493 IEEAEEVFDQMDAQGISRSAV-------------TFNTLIDGLCKAKRIDDATELIEQMV 539

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      P+++TY ++++   K G++ +A  +L  MT  G   + +TY  L+ G C+  
Sbjct: 540 KE---GLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAG 596

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +   A +LLR M     I P   +YN +I      ++   AL  F EM   G  P  ++Y
Sbjct: 597 RTQVALKLLRGMRIKG-IRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTY 655

Query: 361 TTLMKAFALSSQP-KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG----LVEEAKRI 415
             + ++      P K A     EM+    +  +  ++ ML EG   +G    L+   + I
Sbjct: 656 KIVFRSLCRGGGPIKEAFDFLVEMVNKGFMP-EFSSFRMLAEGLLNLGMDDYLISAIELI 714

Query: 416 IER--------------MKENGFYPNVATYGSL 434
           IE+              +K   +Y  +AT+G L
Sbjct: 715 IEKAKFRESDASAIRGYLKIRKYYDALATFGRL 747



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 143/336 (42%), Gaps = 40/336 (11%)

Query: 229 VSDTVRMLGAMRRQED--------NAS------HPDHVTYTTVVSALVKAGSMDRARQVL 274
           +SD  R+L A+R Q D        N++       P    Y  +V  L  AG+ D    ++
Sbjct: 53  ISDQDRLLAALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLV 112

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK--IEPDVVSYNILIDGF 332
            EM R G     +     ++ Y +  + D A +L+    D+    ++ D V +N L++  
Sbjct: 113 REMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLN-- 170

Query: 333 ILIDDSAGAL--TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           +L++ S   L  + +NEM  RGI P  ++  TL+KA   + Q + A  + +EM     V 
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM-SSHGVA 229

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-L 449
            D   +  L++G+   G +E A R+  +M E G  P   T   L NG     +  +AL  
Sbjct: 230 PDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGY 289

Query: 450 LWKEIKERCEVKK-------EGVNADSDLPPPLK-----------PDEELLDALADICVR 491
           + +EI +  E  +        G+  +  +   LK           PD    + + +   +
Sbjct: 290 IQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 349

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
                +A  IV  M + G  P+ T +  + V + S+
Sbjct: 350 NGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQ 385


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 208/457 (45%), Gaps = 34/457 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V  +S ++  L  SG+  P ++  L + +  +             KP+   
Sbjct: 423 MENAGISPNVYTYSIMIHGLCQSGE--PEKASDLLEEMTTK-----------GLKPNAFV 469

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++     G      ++FD+M +    PD+  YN +I   ++  R         ++ 
Sbjct: 470 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ 529

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+     T+  L+  Y+  GDLE AE +VQ M +       +I    LE Y       
Sbjct: 530 ERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS---- 585

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD ++V           S+   +L +    ++RIY  L+    + G +    R+L  + 
Sbjct: 586 -DDIEKV----------SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGI- 633

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E N S PD   Y++++S L K    ++A  +L EM++ GV  N + YN L+ G C+  
Sbjct: 634 --EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 691

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            I  A+ +   +     + P+ V+Y  LIDG   + D + A   +NEM A GI P    Y
Sbjct: 692 DISYARNVFNSILAKGLV-PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVY 750

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L    + +   + A  + +EM    R    I ++N LV+G+C+ G ++E  +++  + 
Sbjct: 751 SVLTTGCSSAGDLEQAMFLIEEMFL--RGHASISSFNNLVDGFCKRGKMQETLKLLHVIM 808

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             G  PN  T  ++ +G+S A K  E   ++ E++++
Sbjct: 809 GRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 845



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 150/323 (46%), Gaps = 25/323 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             P+   Y  L+ G     R ++   +L  M   E     P+ V Y  ++   ++ G+ D
Sbjct: 288 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELK---PNVVVYANLIDGFMREGNAD 344

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +++ EM   GV  N+ITY+ L++G C+  Q+D+A  LL++M  D+   PD ++YN++
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSH-RPDTITYNLI 403

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G         A    +EM   GI+P   +Y+ ++     S +P+ A+ + +EM     
Sbjct: 404 IEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM-TTKG 462

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +K +   +  L+ GYCR G V  A  I ++M +    P++  Y SL  G+S   +  E+ 
Sbjct: 463 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 522

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
             + +++ER                 L P+E     L    ++      A ++V  M + 
Sbjct: 523 KYFAQMQER----------------GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDT 566

Query: 509 GIPPNKTKYKKIYVEMHSRMFTS 531
           G+ PN      IY+++    F S
Sbjct: 567 GLKPNDV----IYIDLLESYFKS 585



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 116/206 (56%), Gaps = 2/206 (0%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VTY  +++ L ++G+++ A     +M   G+  +  TY  L+ G C+  + ++AK LL E
Sbjct: 258 VTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 317

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M+  A+++P+VV Y  LIDGF+   ++  A     EM A G+ P KI+Y  L++      
Sbjct: 318 MS-CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMG 376

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           Q   A+ +  +M+RD   + D + +N+++EG+ R    ++A R++  M+  G  PNV TY
Sbjct: 377 QMDRASLLLKQMVRDSH-RPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 435

Query: 432 GSLANGISLARKPGEALLLWKEIKER 457
             + +G+  + +P +A  L +E+  +
Sbjct: 436 SIMIHGLCQSGEPEKASDLLEEMTTK 461



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/453 (21%), Positives = 185/453 (40%), Gaps = 36/453 (7%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +  +P+   Y+ ++     +G+  +   L  QM     +PD +TYN++I+   R   K
Sbjct: 354 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK 413

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +L  +   GI+  + T+  ++      G+ E A  +++ M          +    
Sbjct: 414 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 473

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +  Y    EG+     E+F+K+        ++  +LP  +  NS I+     G    GRV
Sbjct: 474 ISGYC--REGNVSLACEIFDKM--------TKVNVLPDLYCYNSLIF-----GLSKVGRV 518

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            ++ +    M   ++    P+  TY+ ++   +K G ++ A Q++  M   G+  N + Y
Sbjct: 519 EESTKYFAQM---QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 575

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
             LL+ Y +   I+K     + M D   +  + + Y ILI       +   A    + + 
Sbjct: 576 IDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI-YGILIHNLSSSGNMEAAFRVLSGIE 634

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G  P    Y++L+     ++  + A  + DEM +   V  +IV +N L++G C+ G +
Sbjct: 635 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKK-GVDPNIVCYNALIDGLCKSGDI 693

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
             A+ +   +   G  PN  TY SL +G         A  L+ E+               
Sbjct: 694 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEM--------------- 738

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
            L   + PD  +   L   C  A    +A+ ++
Sbjct: 739 -LATGITPDAFVYSVLTTGCSSAGDLEQAMFLI 770



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 174/403 (43%), Gaps = 25/403 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y A++N      +  +   L D+M     KP+V+ Y  +I    R         +
Sbjct: 290 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 349

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRD---VCKIIRELDLE 171
           ++ ++  G+     T+ +LV      G ++ A  +++ M R+  R       +I E    
Sbjct: 350 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 409

Query: 172 DYS--------SENEGDDDDDDEVFEKLLPNSINPSSEP--------PLLPKTFAPNSRI 215
            +S        SE E      +     ++ + +  S EP         +  K   PN+ +
Sbjct: 410 HHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 469

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+ GY  EG VS    +   M +       PD   Y +++  L K G ++ + +  A
Sbjct: 470 YAPLISGYCREGNVSLACEIFDKMTKVN---VLPDLYCYNSLIFGLSKVGRVEESTKYFA 526

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M   G+  N  TY+ L+ GY +   ++ A++L++ M D   ++P+ V Y  L++ +   
Sbjct: 527 QMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTG-LKPNDVIYIDLLESYFKS 585

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           DD     + F  M  +G+      Y  L+   + S   + A +V   + ++  V  D+  
Sbjct: 586 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVP-DVHV 644

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           ++ L+ G C+    E+A  I++ M + G  PN+  Y +L +G+
Sbjct: 645 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 687



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/470 (21%), Positives = 193/470 (41%), Gaps = 48/470 (10%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T  YN ++      G  ++       M ++G  PD  TY  +I    ++ R +    +L
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 315

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSS 175
           + +    +   +  + +L+  +               MREG  D   K+I+E+     ++
Sbjct: 316 DEMSCAELKPNVVVYANLIDGF---------------MREGNADEAFKMIKEM----VAA 356

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA-----PNSRIYTTLMKGYMNEGRVS 230
             + +    D +   L    +       LL K        P++  Y  +++G+       
Sbjct: 357 GVQPNKITYDNLVRGLC--KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKK 414

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D  R+L  M   E+    P+  TY+ ++  L ++G  ++A  +L EMT  G+  N   Y 
Sbjct: 415 DAFRLLSEM---ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA 471

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ GYC++  +  A E+  +M     + PD+  YN LI G   +     +  +F +M+ 
Sbjct: 472 PLISGYCREGNVSLACEIFDKMT-KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQE 530

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RG+ P + +Y+ L+  +  +   + A ++   ML D  +K + V +  L+E Y +   +E
Sbjct: 531 RGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML-DTGLKPNDVIYIDLLESYFKSDDIE 589

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +     + M + G   +   YG L + +S +     A  +   I++   V          
Sbjct: 590 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSV---------- 639

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 PD  +  +L     + A   KA  I+  M + G+ PN   Y  +
Sbjct: 640 ------PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 683



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           + + ++A+    +   A KV  EM R+    ++ V +N+L+ G CR G VEEA    + M
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEM-RERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 283

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           ++ G  P+  TYG+L NG+  +R+  EA  L  E+   C                LKP+ 
Sbjct: 284 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS--CA--------------ELKPNV 327

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            +   L D  +R     +A +++  M   G+ PNK  Y  +
Sbjct: 328 VVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL 368



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/354 (18%), Positives = 138/354 (38%), Gaps = 78/354 (22%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK------- 55
           ++G +P V  +S+++S L  + D       K F ++ +  +K  DP+IV  +        
Sbjct: 635 KNGSVPDVHVYSSLISGLCKTAD-----REKAFGILDEMSKKGVDPNIVCYNALIDGLCK 689

Query: 56  --------------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
                               P+   Y ++++    +G       L+++M   G  PD   
Sbjct: 690 SGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFV 749

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           Y+V+   C+ A      +F++E +   G    +++F +LV  +   G ++    ++  + 
Sbjct: 750 YSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRGKMQETLKLLHVIM 808

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
            GR  V   +   ++    SE  G   +   +F +L               KT    +R 
Sbjct: 809 -GRGLVPNALTIENIISGLSE-AGKLSEVHTIFVELQQ-------------KTSESAARH 853

Query: 216 YTTLMKGYMNEGR-----VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           +++L    +N+G+     V D +R               DH           K G++D+A
Sbjct: 854 FSSLFMDMINQGKIPLDVVDDMIR---------------DHC----------KEGNLDKA 888

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
             +   +     P    +Y  ++   C++ ++ +A  LL+EM     ++P +V+
Sbjct: 889 LMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA 942


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 211/456 (46%), Gaps = 33/456 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ GY P+   +ST+++ L   G     E+++L D +V+              KPD   
Sbjct: 149 IIKLGYEPNTITFSTLINGLCLEGR--VSEALELVDRMVEM-----------GHKPDLIT 195

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++N     GK  + + L D+M E+G +P+ +TY  ++ +  ++ +  L + +L ++ 
Sbjct: 196 INTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME 255

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I L    +  ++      G L+ A  +   M         I   + +  +   N G 
Sbjct: 256 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC--NAGR 313

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD  ++   ++   INP             N   ++ L+  ++ EG++ +   +   M 
Sbjct: 314 WDDGAKLLRDMIKRKINP-------------NVVTFSVLIDSFVKEGKLREAEELHKEMI 360

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD +TYT+++    K   +D+A Q++  M   G   N  T+NIL+ GYC+  
Sbjct: 361 HR---GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID   EL R+M+    +  D V+YN LI GF  +     A   F EM +R + P  ++Y
Sbjct: 418 RIDDGLELFRKMSLRGVV-ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+     + + + A ++F E +   ++++DI  +N+++ G C    V++A  +   + 
Sbjct: 477 KILLDGLCDNGESEKALEIF-EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 535

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             G  P V TY  +  G+       EA LL+++++E
Sbjct: 536 LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 191/435 (43%), Gaps = 38/435 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ + +A A   +    L L  QM   G   ++ T ++MI    R  +  L    
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           + +I+++G      TF +L+      G +  A  +V  M E       +  + DL   ++
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE-------MGHKPDLITINT 198

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G      E    LL +         ++     PN+  Y  ++      G+ +  + +
Sbjct: 199 LVNGLCLSGKEAEAMLLIDK--------MVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 250

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R+ E+     D V Y+ ++  L K GS+D A  +  EM   G+  N ITYNIL+ G
Sbjct: 251 L---RKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   + D   +LLR+M    KI P+VV++++LID F+       A     EM  RGIAP
Sbjct: 308 FCNAGRWDDGAKLLRDMI-KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 366

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             I+YT+L+  F   +    AN++ D M+    DP ++     +N+L+ GYC+   +++ 
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIR----TFNILINGYCKANRIDDG 422

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             +  +M   G   +  TY +L  G     K   A  L++E+  R             +P
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR------------KVP 470

Query: 473 PPLKPDEELLDALAD 487
           P +   + LLD L D
Sbjct: 471 PNIVTYKILLDGLCD 485



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 18/268 (6%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           T + +++   +   +  A   + ++ ++G   N IT++ L+ G C + ++ +A EL+  M
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            +    +PD+++ N L++G  L    A A+   ++M   G  P  ++Y  ++     S Q
Sbjct: 185 VEMGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 243

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
             LA ++  +M  +  +K+D V ++++++G C+ G ++ A  +   M+  G   N+ TY 
Sbjct: 244 TALAMELLRKM-EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYN 302

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            L  G   A +  +   L +++ +R                 + P+      L D  V+ 
Sbjct: 303 ILIGGFCNAGRWDDGAKLLRDMIKR----------------KINPNVVTFSVLIDSFVKE 346

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R+A E+   M   GI P+   Y  +
Sbjct: 347 GKLREAEELHKEMIHRGIAPDTITYTSL 374



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/326 (19%), Positives = 124/326 (38%), Gaps = 57/326 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  Y ++++         K  Q+ D M   G  P++ T+N++I    +A+R    + +
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             ++   G+     T+ +L+  +   G L +A+ + Q M                     
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM--------------------- 464

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                        + +   PN   Y  L+ G  + G   ++ + 
Sbjct: 465 -----------------------------VSRKVPPNIVTYKILLDGLCDNG---ESEKA 492

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    + E +    D   Y  ++  +  A  +D A  +   +   GV     TYNI++ G
Sbjct: 493 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGG 552

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C++  + +A+ L R+M +D    PD  +YNILI   +   D+  ++    E++  G + 
Sbjct: 553 LCKKGPLSEAELLFRKMEEDGH-APDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS- 610

Query: 356 TKISYTTLMKAFALSSQPKLANKVFD 381
             +  +T+     + S  +L     D
Sbjct: 611 --VDASTIKMVIDMLSDGRLKKSFLD 634



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 24/237 (10%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           ++Y   L+     ++ D A +L R+M     + P V+ ++ L             L    
Sbjct: 54  LSYRERLRSGLVDIKADDAIDLFRDMIHSRPL-PTVIDFSRLFSAIAKTKQYDLVLALCK 112

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGY 403
           +M  +GIA    + + ++  F    +  LA     ++++   +P    + + ++ L+ G 
Sbjct: 113 QMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEP----NTITFSTLINGL 168

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
           C  G V EA  +++RM E G  P++ T  +L NG+ L+ K  EA+LL  ++ E       
Sbjct: 169 CLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEY------ 222

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                       +P+      + ++  ++     A+E++  MEE  I  +  KY  I
Sbjct: 223 ----------GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 221/461 (47%), Gaps = 40/461 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G+ P+   ++ ++S L   G     ++  L++ ++K           +   PD   
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQA--LYERMIK-----------AGYSPDVVT 47

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+    +G+  + L++FD   + G  PDV+TYN +I    +A +      +L+R++
Sbjct: 48  YNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 107

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              +   + T+ SLV      G ++ A  ++  + +G           ++  YS+   G 
Sbjct: 108 SENLVPDVVTYNSLVNGLCKNGRVDEARMLI--VDKGFSP--------NVITYSTLISGL 157

Query: 181 DDDDDEVFEKL-LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +   V E L L  S+        L + + P    Y  L+ G + E RV++   +   +
Sbjct: 158 CRELRGVSEALKLFGSV--------LKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 209

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            +       PD +TYT  +  L KAG ++ A  +L +M   G   + +++N ++ G C++
Sbjct: 210 VKH---GLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKE 266

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++D+A+ LL  M +     P+ +S+N LI G         A+T F EM  RG+ PT ++
Sbjct: 267 KRVDEAEVLLSGM-EAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVT 325

Query: 360 YTTLMKAFALSSQP---KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           Y  L+     + Q    K A  +FD M+   RV  D+V ++ L++G  + G +++A+R++
Sbjct: 326 YNILVDGLCKARQEGRIKEAITLFDAMIEKGRVP-DVVTYSALIDGLGKAGKLDDARRLL 384

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             M+  G  PNV TY SL +G+    K  EAL L+  + E+
Sbjct: 385 GAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEK 425



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 197/444 (44%), Gaps = 52/444 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++GY P V  ++T++      G+    E++K+FD  VKR              PD   
Sbjct: 36  MIKAGYSPDVVTYNTLLHGFCKVGELD--EALKIFDGAVKR-----------GFVPDVVT 82

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC--ARASRKHLLVFVLE 117
           YNA++N      K  +  ++  +M      PDV+TYN ++  LC   R     +L     
Sbjct: 83  YNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARML----- 137

Query: 118 RILEMGITLCMTTFQSLVAAYVG--FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            I++ G +  + T+ +L++       G  E  +     +++G         E ++  Y+ 
Sbjct: 138 -IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGY--------EPEVPTYNI 188

Query: 176 ENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +G   +D  +E FE              L+     P++  YT  + G    GRV D +
Sbjct: 189 LIDGLLKEDRVNEAFELF----------SGLVKHGLEPDAITYTVFIDGLCKAGRVEDAL 238

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ML  M   ++    PD V++  V++ L K   +D A  +L+ M   G   N I++N L+
Sbjct: 239 LMLKDM---DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 295

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA---GALTFFNEMRA 350
            G C+  +  KA    +EM     ++P VV+YNIL+DG            A+T F+ M  
Sbjct: 296 CGQCRAGKWKKAMTTFKEMLKRG-VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 354

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P  ++Y+ L+     + +   A ++   M     +  ++  +N L+ G C +  V+
Sbjct: 355 KGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIP-NVYTYNSLISGLCGLEKVD 413

Query: 411 EAKRIIERMKENGFYPNVATYGSL 434
           EA  +   M E G  P+  TYG++
Sbjct: 414 EALELFVAMVEKGCVPDTITYGTI 437



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 154/337 (45%), Gaps = 31/337 (9%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + F P+   Y  L+ G+    ++ +  R+L   +R       PD VTY ++V+ L K G 
Sbjct: 74  RGFVPDVVTYNALINGFCKADKLDEAQRIL---QRMVSENLVPDVVTYNSLVNGLCKNGR 130

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKELLREMADDAKIEPDVVSY 325
           +D AR ++ +    G   N ITY+ L+ G C++L+ + +A +L   +      EP+V +Y
Sbjct: 131 VDEARMLIVDK---GFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQG-YEPEVPTY 186

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           NILIDG +  D    A   F+ +   G+ P  I+YT  +     + + + A  +  +M  
Sbjct: 187 NILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDE 246

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              V  D+V+ N ++ G C+   V+EA+ ++  M+  G  PN  ++ +L  G   A K  
Sbjct: 247 KGCVP-DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 305

Query: 446 EALLLWKEIKER----------------CEVKKEG------VNADSDLPPPLKPDEELLD 483
           +A+  +KE+ +R                C+ ++EG         D+ +     PD     
Sbjct: 306 KAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYS 365

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           AL D   +A     A  ++  ME  G  PN   Y  +
Sbjct: 366 ALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSL 402



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 152/347 (43%), Gaps = 64/347 (18%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F PN   Y  L+ G  N GR+SD   +     R       PD VTY T++    K G +D
Sbjct: 6   FWPNRITYNALLSGLCNGGRMSDAQAL---YERMIKAGYSPDVVTYNTLLHGFCKVGELD 62

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A ++     + G   + +TYN L+ G+C+  ++D+A+ +L+ M  +  + PDVV+YN L
Sbjct: 63  EALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE-NLVPDVVTYNSL 121

Query: 329 IDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF-----ALSSQPKL----- 375
           ++G      +D++   +        +G +P  I+Y+TL+         +S   KL     
Sbjct: 122 VNGLCKNGRVDEARMLIV------DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVL 175

Query: 376 ----------ANKVFDEMLRDPRV---------------KVDIVAWNMLVEGYCRMGLVE 410
                      N + D +L++ RV               + D + + + ++G C+ G VE
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A  +++ M E G  P+V ++ ++ NG+   ++  EA           EV   G+ A   
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA-----------EVLLSGMEAKGC 284

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            P  +       + L     RA  ++KA+     M + G+ P    Y
Sbjct: 285 SPNAIS-----FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 326



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 22/242 (9%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M + G   NRITYN LL G C   ++  A+ L   M   A   PDVV+YN L+ GF  + 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMI-KAGYSPDVVTYNTLLHGFCKVG 59

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   AL  F+    RG  P  ++Y  L+  F  + +   A ++   M+ +  V  D+V +
Sbjct: 60  ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVP-DVVTY 118

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA-RKPGEALLLWKEIK 455
           N LV G C+ G V+EA+ +I    + GF PNV TY +L +G+    R   EAL L+  + 
Sbjct: 119 NSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSV- 174

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                          L    +P+    + L D  ++     +A E+ + + +HG+ P+  
Sbjct: 175 ---------------LKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAI 219

Query: 516 KY 517
            Y
Sbjct: 220 TY 221



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 142/335 (42%), Gaps = 48/335 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P+V  +ST++S L      G  E++KLF  V+K+             +P+   YN +
Sbjct: 142 GFSPNVITYSTLISGLCRE-LRGVSEALKLFGSVLKQ-----------GYEPEVPTYNIL 189

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++      +  +  +LF  + + G +PD +TY V I    +A R    + +L+ + E G 
Sbjct: 190 IDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGC 249

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + +  +++        ++ AE ++  M                     E +G   + 
Sbjct: 250 VPDVVSHNAVINGLCKEKRVDEAEVLLSGM---------------------EAKGCSPNA 288

Query: 185 DEVFEKLLPNSINP-------SSEPPLLPKTFAPNSRIYTTLMKGYM---NEGRVSDTVR 234
              F  L+             ++   +L +   P    Y  L+ G      EGR+ + + 
Sbjct: 289 IS-FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAIT 347

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +  AM  +      PD VTY+ ++  L KAG +D AR++L  M   G   N  TYN L+ 
Sbjct: 348 LFDAMIEK---GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 404

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           G C   ++D+A EL   M +   + PD ++Y  +I
Sbjct: 405 GLCGLEKVDEALELFVAMVEKGCV-PDTITYGTII 438


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 129/511 (25%), Positives = 221/511 (43%), Gaps = 93/511 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           MLR G  P+V  ++ +V  L A G               G   +   ++ +V    +  +
Sbjct: 143 MLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 48  PD----IVS------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
            D    +VS      ++KP+   +N+++N     G+ +   ++FD+M   G  PDV++YN
Sbjct: 203 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 262

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            ++    +    H  + V   + + G+   + TF SL+ A    G+LE A  +V  MRE 
Sbjct: 263 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 322

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
              + ++     ++ +    +G  DD     E++    I PS                Y 
Sbjct: 323 GLRMNEVTFTALIDGFC--KKGFLDDALLAVEEMRKCGIQPSVV-------------CYN 367

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ GY   GR+ D  R L  +R  E     PD VTY+T++S   K G++D A Q+  +M
Sbjct: 368 ALINGYCKLGRM-DLAREL--IREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 424

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            + GV  + ITY+ L++G C++ +++ A EL   M     ++PD  +Y  LIDG     +
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENML-QLGVQPDEFTYTTLIDGHCKEGN 483

Query: 338 SAGALTFFNEMRARGIAPTKISYTT----------------------------------- 362
              AL+  +EM  +G+ P  ++Y+                                    
Sbjct: 484 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 543

Query: 363 ---------------LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
                          L+K F +    K A+KV+  ML D   K+D   +++L+ G+CR G
Sbjct: 544 LMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSML-DRNWKLDGSVYSILIHGHCRGG 602

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            V +A    ++M  +GF PN  +  SL  G+
Sbjct: 603 NVRKALSFHKQMLRSGFSPNSTSTISLVRGL 633



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 223/495 (45%), Gaps = 59/495 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY P V A++ V+              + L D  +   R+F    +     P+   YN +
Sbjct: 113 GYAPSVPAYNAVL--------------LALSDASLPSARRFLSSMLRHGVAPNVYTYNIL 158

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG- 123
           + A    G+ ++ + +   M   G  P+ +TYN ++    RA        V+  + E G 
Sbjct: 159 VRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGN 218

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDD 182
               + TF S+V      G +E A  +   M REG           D+  Y++   G   
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP--------DVVSYNTLLSG--- 267

Query: 183 DDDEVFEKL--LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                + K+  L  S+   SE  +  +   P+   +T+L+      G +   V ++  MR
Sbjct: 268 -----YCKVGCLHESLAVFSE--MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 320

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +     + VT+T ++    K G +D A   + EM + G+  + + YN L+ GYC+  
Sbjct: 321 ---ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D A+EL+REM +  +++PDVV+Y+ +I G+  + +   A     +M  +G+ P  I+Y
Sbjct: 378 RMDLARELIREM-EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITY 436

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           ++L++      +   A ++F+ ML+   V+ D   +  L++G+C+ G VE+A  + + M 
Sbjct: 437 SSLIRGLCEEKRLNDACELFENMLQ-LGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495

Query: 421 ENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
             G  P+V TY  L NG+S + +  EA  LL+K   E                 P+ PD 
Sbjct: 496 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE----------------DPV-PDN 538

Query: 480 ELLDALADICVRAAF 494
              DAL   C +A F
Sbjct: 539 IKYDALMLCCSKAEF 553



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 29/304 (9%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P    Y  V+ AL  A S+  AR+ L+ M R GV  N  TYNIL++  C + ++++A  +
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTTLMKAF 367
           + +M   A   P+ V+YN L+  F    +  GA    + MR  G A P  +++ +++   
Sbjct: 175 VGDM-RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + + + A KVFDEM+R+  +  D+V++N L+ GYC++G + E+  +   M + G  P+
Sbjct: 234 CKAGRMEGARKVFDEMVREG-LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V T+ SL +    A    +A+ L  +++ER                 L+ +E    AL D
Sbjct: 293 VVTFTSLIHATCKAGNLEQAVALVAQMRER----------------GLRMNEVTFTALID 336

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKR 547
              +  F   AL  V  M + GI P+   Y  +          + +    R D  RE  R
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNAL---------INGYCKLGRMDLARELIR 387

Query: 548 AAEA 551
             EA
Sbjct: 388 EMEA 391


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 226/494 (45%), Gaps = 71/494 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G+ P+   ++ ++S L   G     ++  L++ ++K           +   PD   
Sbjct: 76  MRKHGFWPNRITYNALLSGLCNGGRMSDAQA--LYERMIK-----------AGYSPDVVT 122

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+    +GK  + L++FD   + G  PDV+TYN +I    +A +      +L+R++
Sbjct: 123 YNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 182

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIV------------QAMREGRRDVCKIIREL 168
              +   + T+ SLV      G ++ A  ++              +  G   +C+ +R L
Sbjct: 183 SESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISG---LCRELRRL 239

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPS-----------------SEP-----PLLP 206
           +                ++ EK++ N   P                  SE       +L 
Sbjct: 240 E-------------SARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLR 286

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + + P    Y  L+ G + E RV++   +   + +   +   PD +TYT  +  L KAG 
Sbjct: 287 QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVK---HGLEPDAITYTVFIDGLCKAGR 343

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           ++ A  +L +M   G   + +++N ++ G C++ ++D+A+ LL  M +     P+ +S+N
Sbjct: 344 VEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM-EAKGCSPNAISFN 402

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP---KLANKVFDEM 383
            LI G         A+T F EM  RG+ PT ++Y  L+     + Q    K A  +FD M
Sbjct: 403 TLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAM 462

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +   RV  D+V ++ L++G  + G +++A+R++  M+  G  PNV TY SL +G+    K
Sbjct: 463 IEKGRVP-DVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDK 521

Query: 444 PGEALLLWKEIKER 457
             EAL L+  + E+
Sbjct: 522 VDEALELFVAMVEK 535



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 171/370 (46%), Gaps = 29/370 (7%)

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC-MTTFQSLVAAYVGFGDLEIAET 149
           PD  T  ++++   ++ +       +E++L  G  LC ++TF   ++       +  A+T
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKG--LCDISTFNIYISGLCRASRIGDAQT 71

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           +   MR+      +I     L      N G   D   ++E+++                +
Sbjct: 72  VFDGMRKHGFWPNRITYNALLSGLC--NGGRMSDAQALYERMIKAG-------------Y 116

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRML-GAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +P+   Y TL+ G+   G++ + +++  GA++R       PD VTY  +++   KA  +D
Sbjct: 117 SPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKR----GFVPDVVTYNALINGFCKADKLD 172

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+++L  M    +  + +TYN L+ G C+  ++D+A+ L+     D    P+V++Y+ L
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV----DKGFSPNVITYSTL 228

Query: 329 IDGFIL-IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           I G    +     A     +M   G  P  +SY  L+   A       A K+F  +LR  
Sbjct: 229 ISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQG 288

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
             + ++  +N+L++G  +   V EA  +   + ++G  P+  TY    +G+  A +  +A
Sbjct: 289 -YEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDA 347

Query: 448 LLLWKEIKER 457
           LL+ K++ E+
Sbjct: 348 LLMLKDMDEK 357



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 163/387 (42%), Gaps = 39/387 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P+V  +ST++S L         E  +L     +  R+  +  +++  KPD  +YNA+
Sbjct: 217 GFSPNVITYSTLISGLCR-------ELRRL-----ESARQLLEKMVLNGCKPDIVSYNAL 264

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++  A      + L+LF  +   G +P+V TYN++I    +  R +    +   +++ G+
Sbjct: 265 IHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGL 324

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIRELDLED 172
                T+   +      G +E A  +++ M E                +CK  R  + E 
Sbjct: 325 EPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEV 384

Query: 173 YSSENEGDDDDDDEV-FEKLLPNSINP-------SSEPPLLPKTFAPNSRIYTTLMKGYM 224
             S  E      + + F  L+             ++   +L +   P    Y  L+ G  
Sbjct: 385 LLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLC 444

Query: 225 ---NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
               EGR+ + + +  AM  +      PD VTY+ ++  L KAG +D AR++L  M   G
Sbjct: 445 KARQEGRIKEAITLFDAMIEK---GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKG 501

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              N  TYN L+ G C   ++D+A EL   M +   + PD ++Y  +I      +    A
Sbjct: 502 CIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCV-PDTITYGTIISALCKQEMVDKA 560

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFA 368
           L  F+     G+ PT   Y +L+    
Sbjct: 561 LALFDGSLEAGVVPTSGMYFSLIDGLC 587



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 198/513 (38%), Gaps = 119/513 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++GY P V  ++T++      G     E++K+FD  VKR              PD   
Sbjct: 111 MIKAGYSPDVVTYNTLLHGFCKVGKLD--EALKIFDGAVKR-----------GFVPDVVT 157

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC--ARASRKHLLVFVLE 117
           YNA++N      K  +  ++  +M      PDV+TYN ++  LC   R     +L     
Sbjct: 158 YNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML----- 212

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------IIRELD 169
            I++ G +  + T+ +L++      +L   E+  Q + +   + CK        +I  L 
Sbjct: 213 -IVDKGFSPNVITYSTLISGLCR--ELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLA 269

Query: 170 LEDYSSEN------------EGDDDDDDEVFEKLLP-NSINPSSE--PPLLPKTFAPNSR 214
            E   SE             E +    + + + LL  + +N + E    L+     P++ 
Sbjct: 270 REQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAI 329

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQE---DNASH----------------------- 248
            YT  + G    GRV D + ML  M  +    D  SH                       
Sbjct: 330 TYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM 389

Query: 249 ------PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ- 301
                 P+ +++ T++    +AG   +A     EM + GV    +TYNIL+ G C+  Q 
Sbjct: 390 EAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 449

Query: 302 -------------------------------------IDKAKELLREMADDAKIEPDVVS 324
                                                +D A+ LL  M     I P+V +
Sbjct: 450 GRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCI-PNVYT 508

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN LI G   +D    AL  F  M  +G  P  I+Y T++ A         A  +FD  L
Sbjct: 509 YNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSL 568

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
               V    + ++ L++G C +  V+EA ++++
Sbjct: 569 EAGVVPTSGMYFS-LIDGLCAVARVDEALKLLQ 600


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 203/464 (43%), Gaps = 41/464 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P+   + T+V  +   GD   V ++ L       +RK  +   VS   P+   
Sbjct: 208 MLEDGLQPNQITYGTIVDGMCKMGD--TVSALNL-------LRKMEE---VSHIIPNVVI 255

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     G+      LF +M E    PD++TYN MI     + R      +L+ +L
Sbjct: 256 YNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEML 315

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I   + TF +L+ A+V  G    AE +   M         +     ++ +  +N   
Sbjct: 316 ERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNR-- 373

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D  E    L P             K  +P+   + TL+ GY    RV D +++L  M 
Sbjct: 374 -LDAAEHMFYLTPT------------KGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 420

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                A   + +TYTT++    + G ++ A+ +L EM   GV  N +T N LL G C   
Sbjct: 421 EAGLVA---NTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNG 477

Query: 301 QIDKAKELLREMAD-----DAK-----IEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           ++  A E+ + M       DA      +EPDV +YNILI G I       A   + EM  
Sbjct: 478 KLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPH 537

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI P  I+Y++++      S+   A ++FD M        D+V +N L+ GYC+ G+V+
Sbjct: 538 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPDVVTFNTLITGYCKAGMVD 596

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +   +   M + G   +  TY +L  G         AL +++E+
Sbjct: 597 DGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEM 640



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 141/355 (39%), Gaps = 65/355 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  Y+++++      +      +F      G  PD++T+N +I    RA R    + +
Sbjct: 356 PSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKL 415

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G+     T+ +L+  +   GDL  A+ ++Q M                     
Sbjct: 416 LHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEM--------------------- 454

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                        +     PN     TL+ G  + G++ D + M
Sbjct: 455 -----------------------------ISSGVCPNVVTCNTLLDGLCDNGKLKDALEM 485

Query: 236 LGAMRRQED--------NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
             AM++ +         N   PD  TY  ++  L+  G    A ++  EM   G+  + I
Sbjct: 486 FKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTF 344
           TY+ ++ G C+Q ++D+A ++   M   +   PDVV++N LI G+    ++DD    L  
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFDSMGSKS-FSPDVVTFNTLITGYCKAGMVDD---GLEL 601

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
           F EM  RGI    I+Y TL+  F        A  +F EM+        I   NML
Sbjct: 602 FCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNML 656



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P    + TL+ G   E R+S+ + +   M +       P+ VT+TT+++ L + G + 
Sbjct: 147 FHPTVVTFNTLLHGLCVEDRISEALDLFHQMCK-------PNVVTFTTLMNGLCREGRVV 199

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +L  M   G+  N+ITY  ++ G C+      A  LLR+M + + I P+VV YN +
Sbjct: 200 EAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTI 259

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG       + A   F EM+ + I P  ++Y  ++  F +S +   A ++  EML + +
Sbjct: 260 IDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEML-ERK 318

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +  D+V ++ L+  + + G   EA+ + + M      P+  TY S+ +G
Sbjct: 319 INPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDG 367



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 116/268 (43%), Gaps = 21/268 (7%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           ++T ++        +  A     ++T++G     +T+N LL G C + +I +A +L  +M
Sbjct: 118 SFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM 177

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                 +P+VV++  L++G         A+   + M   G+ P +I+Y T++        
Sbjct: 178 C-----KPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGD 232

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A  +  +M     +  ++V +N +++G  + G   +A  +   M+E   +P++ TY 
Sbjct: 233 TVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYN 292

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            + NG  ++ +  +A  L +E+ ER                 + PD     AL +  V+ 
Sbjct: 293 CMINGFCISGRWSDAEQLLQEMLER----------------KINPDVVTFSALINAFVKE 336

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
             F +A E+   M    I P+   Y  +
Sbjct: 337 GKFFEAEELYDEMLPRSIIPSTVTYSSM 364



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 27/196 (13%)

Query: 328 LIDGFILIDDSAGALTFFNEM-RARGIAPTKISYTTLMKAFALSSQPKLANKVFD--EML 384
           L  GF  I     A+  F  M R+R + P+ I +  LM       +P +   +    EML
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPL-PSVIDFCKLMGVVVRMGRPDVVISLHKKMEML 110

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           R P    +  ++ +L++ +C    +  A     ++ + GF+P V T+ +L +G+ +  + 
Sbjct: 111 RMP---CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRI 167

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            EAL L+ ++                     KP+      L +   R     +A+ ++  
Sbjct: 168 SEALDLFHQM--------------------CKPNVVTFTTLMNGLCREGRVVEAVALLDR 207

Query: 505 MEEHGIPPNKTKYKKI 520
           M E G+ PN+  Y  I
Sbjct: 208 MLEDGLQPNQITYGTI 223


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 136/545 (24%), Positives = 234/545 (42%), Gaps = 61/545 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G++P   A S +V  L   G+ G       FD+V  +V+KF          P    
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSA-----FDLV-NKVKKFG-------VAPSLFV 357

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YNA++N+    GK  +   LF+ M   G  P+ +TY+++I   C R      L F L ++
Sbjct: 358 YNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF-LGKM 416

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            E+GI   +  + SL++ +   G L  A+++   M         +I    +  Y  E E 
Sbjct: 417 TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE- 475

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                       L N+     E  +  K  +PN+  +T L+ G  +  R+++  ++ G M
Sbjct: 476 ------------LHNAFRLYHE--MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEM 521

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
              E N   P+ VTY  ++    K G+  RA ++L EM   G+  +  TY  L+ G C  
Sbjct: 522 --VEWNVI-PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578

Query: 300 LQIDKAKELLREMADDAK----IE---PDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
            ++ +A+E + ++  + +    IE   P+VV+Y  LI+G   I     A     EM A  
Sbjct: 579 GRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASN 638

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P + +Y   +         + A ++ D +L       + V +N+L+ G+C++G ++EA
Sbjct: 639 SLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG--FLANTVTYNILIRGFCKLGRIQEA 696

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             ++  M ++G  P+  +Y ++           EA+ LW+ +  R      GVN      
Sbjct: 697 AEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNR------GVN------ 744

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
               PD    + L   C       KA E+   M   G+ PN+  Y  +   +H     S 
Sbjct: 745 ----PDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSL---IHGTCLMSS 797

Query: 533 HASQA 537
            +S A
Sbjct: 798 VSSTA 802



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 118/295 (40%), Gaps = 29/295 (9%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD   YT VV +L +     RAR+V+  M   G   +  TYN+ ++G C+  ++ +A E 
Sbjct: 213 PDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVE- 271

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM---- 364
           ++ +     +  DV +Y  L+ G   +++        NEM   G  P++ + + L+    
Sbjct: 272 IKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLR 331

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           K   + S   L NKV     +   V   +  +N L+   C+ G ++EA+ +   M   G 
Sbjct: 332 KKGNIGSAFDLVNKV-----KKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGL 386

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKE----------------RCEVKKEGVNA- 467
           +PN  TY  L +      K   AL    ++ E                 C++ K      
Sbjct: 387 FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKS 446

Query: 468 --DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             D  +   LKP+  +  +L     +      A  +   M   GI PN   +  +
Sbjct: 447 LFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 137/318 (43%), Gaps = 31/318 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  + A+++   +  +  +  +LF +M E+   P+ +TYNV+I+   +         +
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR---------------- 159
           L+ ++E G+     T++ L++     G +  A   +  ++  ++                
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYT 612

Query: 160 ----DVCKI----IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL---LPKT 208
                +CKI      EL   +  + N   + +    F   L +  N      L   L + 
Sbjct: 613 ALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG 672

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  N+  Y  L++G+   GR+ +   +L  M    D+   PD ++Y+T++    + G + 
Sbjct: 673 FLANTVTYNILIRGFCKLGRIQEAAEVLVNMI---DSGISPDCISYSTIIYEYCRRGDLK 729

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A ++   M   GV  + + YN L+ G C   ++ KA EL  +M     ++P+  +YN L
Sbjct: 730 EAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRG-VKPNRATYNSL 788

Query: 329 IDGFILIDDSAGALTFFN 346
           I G  L+   +    +F+
Sbjct: 789 IHGTCLMSSVSSTADYFS 806



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 18/245 (7%)

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V+  M   G+     T + +L G  +  Q   A  L  E+     + PDV  Y  ++   
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG-LRPDVYVYTAVVRSL 225

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
             + D   A      M + G   +  +Y   ++    + +   A ++   +L    ++ D
Sbjct: 226 CELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEI-KNLLSYKGLRAD 284

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +  +  LV G C++   E  + ++  M E GF P+ A   +L +G+      G A  L  
Sbjct: 285 VGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVN 344

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                 +VKK GV           P   + +AL +   +     +A  +   M   G+ P
Sbjct: 345 ------KVKKFGV----------APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFP 388

Query: 513 NKTKY 517
           N   Y
Sbjct: 389 NDVTY 393


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 206/454 (45%), Gaps = 46/454 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P  +A + V+SRL         E+++LF  +         PD       +  +YN +
Sbjct: 230 GISPSPEACNAVLSRLPLD------EAIELFQGL---------PD------KNVCSYNIL 268

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           L      G+ +   QLFD+M    + PDV+TY ++I   CA    ++  V +L+ ++  G
Sbjct: 269 LKVLCGAGRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENA-VKLLDDMVARG 324

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +    T + S+VA     G +  A T+V+ M   +  + + +    L  +   N+GD   
Sbjct: 325 VEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFC--NKGDLVS 382

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
               F+++               K  A +   YTTL+ G    G + +  ++L  M  + 
Sbjct: 383 ARRWFDEMQR-------------KGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARR 429

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
            +    D VTYT +V    K G M  A QV   M + GV  N +TY  L  G C+Q  + 
Sbjct: 430 LDV---DEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQ 486

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            A ELL EM++   +E +  +YN LI+G         A+    +M A G+ P   +YTTL
Sbjct: 487 AANELLHEMSNKG-LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTL 545

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           + A   S +   A+ +  EML D  +K  IV +N+L+ G+C  G VE  K+++E M E  
Sbjct: 546 IDALCKSGELDRAHDLLQEML-DNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKN 604

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +PN  TY SL     +         ++K +  R
Sbjct: 605 IHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSR 638



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 201/440 (45%), Gaps = 35/440 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD   Y  +++    LG+ +  ++L D M   G +P+   Y  ++ L     R    +
Sbjct: 290 SPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDAL 349

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGR-----------RDV 161
            V+E ++   + L    + ++++ +   GDL  A      M R+G              +
Sbjct: 350 TVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGL 409

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C+     + E    E      D DEV   +L +      +          ++ +  APN 
Sbjct: 410 CRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNV 469

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQ--EDNASHPDHVTYTTVVSALVKAGSMDRAR 271
             YT L  G   +G V     +L  M  +  E NA      TY ++++ L KAG +D+A 
Sbjct: 470 VTYTALSDGLCKQGDVQAANELLHEMSNKGLELNA-----CTYNSLINGLCKAGYLDQAM 524

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           + +A+M   G+  +  TY  L+   C+  ++D+A +LL+EM D+  I+P +V+YN+L++G
Sbjct: 525 RTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNG-IKPTIVTYNVLMNG 583

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F +     G       M  + I P   +Y +LMK + + +  K   +++  M     V+ 
Sbjct: 584 FCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMC-SRNVEP 642

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           +   +N+L++G+C+   ++EA+     M E GF    ++Y +L   ++  +K  EA  L+
Sbjct: 643 NENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLF 702

Query: 452 KEIKERCEVKKEGVNADSDL 471
            ++      +KEG  A+ D+
Sbjct: 703 HDM------RKEGFTAEPDV 716



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 24/305 (7%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+K     GRV D  ++   M      AS PD VTY  ++      G ++ A ++L 
Sbjct: 265 YNILLKVLCGAGRVEDARQLFDEM------ASPPDVVTYGILIHGYCALGELENAVKLLD 318

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M   GV  N   Y  ++   C + ++  A  ++ +M    K+  D   Y  ++ GF   
Sbjct: 319 DMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHH-KVILDEAVYTTVLSGFCNK 377

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            D   A  +F+EM+ +G+A   ++YTTL+     + + K A KV  EML   R+ VD V 
Sbjct: 378 GDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLAR-RLDVDEVT 436

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           + +LV+GYC+ G + EA ++   M + G  PNV TY +L++G+    K G       +++
Sbjct: 437 YTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLC---KQG-------DVQ 486

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
              E+  E  N   +L      +    ++L +   +A +  +A+  +A M+  G+ P+  
Sbjct: 487 AANELLHEMSNKGLEL------NACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVY 540

Query: 516 KYKKI 520
            Y  +
Sbjct: 541 TYTTL 545


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/511 (25%), Positives = 221/511 (43%), Gaps = 93/511 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           MLR G  P+V  ++ +V  L A G               G   +   ++ +V    +  +
Sbjct: 143 MLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 48  PD----IVS------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
            D    +VS      ++KP+   +N+++N     G+ +   ++FD+M   G  PDV++YN
Sbjct: 203 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 262

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            ++    +    H  + V   + + G+   + TF SL+ A    G+LE A  +V  MRE 
Sbjct: 263 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 322

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
              + ++     ++ +    +G  DD     E++    I PS                Y 
Sbjct: 323 GLRMNEVTFTALIDGFC--KKGFLDDALLAVEEMRKCGIQPSVV-------------CYN 367

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ GY   GR+ D  R L  +R  E     PD VTY+T++S   K G++D A Q+  +M
Sbjct: 368 ALINGYCKLGRM-DLAREL--IREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 424

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            + GV  + ITY+ L++G C++ +++ A EL   M     ++PD  +Y  LIDG     +
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENML-QLGVQPDEFTYTTLIDGHCKEGN 483

Query: 338 SAGALTFFNEMRARGIAPTKISYTT----------------------------------- 362
              AL+  +EM  +G+ P  ++Y+                                    
Sbjct: 484 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 543

Query: 363 ---------------LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
                          L+K F +    K A+KV+  ML D   K+D   +++L+ G+CR G
Sbjct: 544 LMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSML-DRNWKLDGSVYSILIHGHCRGG 602

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            V +A    ++M  +GF PN  +  SL  G+
Sbjct: 603 NVRKALSFHKQMLRSGFSPNSTSTISLVRGL 633



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 223/495 (45%), Gaps = 59/495 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY P V A++ V+              + L D  +   R+F    +     P+   YN +
Sbjct: 113 GYAPSVPAYNAVL--------------LALSDASLPSARRFLSSMLRHGVAPNVYTYNIL 158

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG- 123
           + A    G+ ++ + +   M   G  P+ +TYN ++    RA        V+  + E G 
Sbjct: 159 VRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGN 218

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDD 182
               + TF S+V      G +E A  +   M REG           D+  Y++   G   
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP--------DVVSYNTLLSG--- 267

Query: 183 DDDEVFEKL--LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                + K+  L  S+   SE  +  +   P+   +T+L+      G +   V ++  MR
Sbjct: 268 -----YCKVGCLHESLAVFSE--MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 320

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +     + VT+T ++    K G +D A   + EM + G+  + + YN L+ GYC+  
Sbjct: 321 ---ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D A+EL+REM +  +++PDVV+Y+ +I G+  + +   A     +M  +G+ P  I+Y
Sbjct: 378 RMDLARELIREM-EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITY 436

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           ++L++      +   A ++F+ ML+   V+ D   +  L++G+C+ G VE+A  + + M 
Sbjct: 437 SSLIRGLCEEKRLNDACELFENMLQ-LGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495

Query: 421 ENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
             G  P+V TY  L NG+S + +  EA  LL+K   E                 P+ PD 
Sbjct: 496 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE----------------DPV-PDN 538

Query: 480 ELLDALADICVRAAF 494
              DAL   C +A F
Sbjct: 539 IKYDALMLCCSKAEF 553



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 29/304 (9%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P    Y  V+ AL  A S+  AR+ L+ M R GV  N  TYNIL++  C + ++++A  +
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTTLMKAF 367
           + +M   A   P+ V+YN L+  F    +  GA    + MR  G A P  +++ +++   
Sbjct: 175 VGDM-RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + + + A KVFDEM+R+  +  D+V++N L+ GYC++G + E+  +   M + G  P+
Sbjct: 234 CKAGRMEGARKVFDEMVREG-LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V T+ SL +    A    +A+ L  +++ER                 L+ +E    AL D
Sbjct: 293 VVTFTSLIHATCKAGNLEQAVALVAQMRER----------------GLRMNEVTFTALID 336

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKR 547
              +  F   AL  V  M + GI P+   Y  +          + +    R D  RE  R
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNAL---------INGYCKLGRMDLARELIR 387

Query: 548 AAEA 551
             EA
Sbjct: 388 EMEA 391


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 222/474 (46%), Gaps = 38/474 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP+    N ++N    LG       +F ++ + G  PD +T+  + K LC +   +   +
Sbjct: 117 KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFL 176

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  ++++ +G      ++ +L+      G+   A  ++Q + +G      ++    + D 
Sbjct: 177 F-HDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV-DGNLVQPNVVMYNTIIDS 234

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +             KL+  + +  SE  ++ K  +P+   Y+ L+ G+   G++ D +
Sbjct: 235 MCK------------VKLVNEAFDLFSE--MVSKGISPDVVTYSALISGFCILGKLKDAI 280

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +      PD  T+  +V+A  K G M   + V   M + G+  N +TYN L+
Sbjct: 281 DLFNKMILEN---IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GYC   +++KAK +   MA    + PD+ SY+I+I+GF  I     A+  F EM  + I
Sbjct: 338 DGYCLVKEVNKAKSIFNTMAQGG-VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++Y++L+   + S +   A ++ D+M  D  V  +I  +N +++  C+   V++A 
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQM-HDRGVPPNICTYNSILDALCKTHQVDKAI 455

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            ++ + K+ GF P+++TY  L  G+  + K  +A    +++ E   VK  G N D     
Sbjct: 456 ALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDA----RKVFEDLLVK--GYNLDVYAYT 509

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
            +         +   CV    F +AL +++ ME++G  P+   Y+ I + +  +
Sbjct: 510 IM---------IQGFCVE-GLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKK 553



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 177/412 (42%), Gaps = 75/412 (18%)

Query: 167 ELDLEDYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           +++   YSS      +  D DD   +F +LL  +  P +        F  N +I  +L+K
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPA--------FEFN-KILGSLVK 97

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
                 +   TV  L   ++ E     P+ V    +++   + G +  A  V A++ ++G
Sbjct: 98  S-----KHYHTVLYLS--QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMG 150

Query: 282 VPANRITYNILLKGYCQQLQIDKAKEL--------------------------------- 308
              + IT+  L KG C + QI +A                                    
Sbjct: 151 YVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAAL 210

Query: 309 -LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
            L +  D   ++P+VV YN +ID    +     A   F+EM ++GI+P  ++Y+ L+  F
Sbjct: 211 DLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGF 270

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            +  + K A  +F++M+ +  +K D+  +N+LV  +C+ G ++E K + + M + G  PN
Sbjct: 271 CILGKLKDAIDLFNKMILE-NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329

Query: 428 VATYGSLANGISLARKPGEALLLWKE----------------IKERCEVKK--EGVNADS 469
             TY SL +G  L ++  +A  ++                  I   C++KK  E +N   
Sbjct: 330 FVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFK 389

Query: 470 DLP-PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++    + PD     +L D   ++     AL++V  M + G+PPN   Y  I
Sbjct: 390 EMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSI 441



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 175/383 (45%), Gaps = 44/383 (11%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKL----FDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           P+V  ++T++  +           VKL    FD+  + V K   PD+V+        Y+A
Sbjct: 223 PNVVMYNTIIDSMC---------KVKLVNEAFDLFSEMVSKGISPDVVT--------YSA 265

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++    LGK K  + LF++M     KPDV T+N+++    +  +      V + +++ G
Sbjct: 266 LISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQG 325

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I     T+ SL+  Y    ++  A++I   M +G  +        D++ YS    G    
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNP-------DIQSYSIMING---- 374

Query: 184 DDEVFEKL--LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
               F K+     ++N   E  +  K   P+   Y++L+ G    GR+S  ++++  M  
Sbjct: 375 ----FCKIKKFDEAMNLFKE--MHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM-- 426

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             D    P+  TY +++ AL K   +D+A  +L +    G   +  TY+IL+KG CQ  +
Sbjct: 427 -HDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGK 485

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ++ A+++  ++        DV +Y I+I GF +      AL   ++M   G  P   +Y 
Sbjct: 486 LEDARKVFEDLLVKG-YNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYE 544

Query: 362 TLMKAFALSSQPKLANKVFDEML 384
            ++ +     +  +A K+  EM+
Sbjct: 545 IIILSLFKKDENDMAEKLLREMI 567



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 66/285 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P ++++S +++             +K FD  +   ++    +I+    PD   
Sbjct: 356 MAQGGVNPDIQSYSIMINGFC---------KIKKFDEAMNLFKEMHRKNII----PDVVT 402

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+++++  +  G+    LQL DQMH+ G  P++ TYN ++    +  +    + +L +  
Sbjct: 403 YSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFK 462

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    ++T+  L+      G LE                                   
Sbjct: 463 DKGFQPDISTYSILIKGLCQSGKLE----------------------------------- 487

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D  +VFE LL              K +  +   YT +++G+  EG  ++ + +L  M 
Sbjct: 488 --DARKVFEDLLV-------------KGYNLDVYAYTIMIQGFCVEGLFNEALALLSKM- 531

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
             EDN   PD  TY  ++ +L K    D A ++L EM   G+P N
Sbjct: 532 --EDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 123/295 (41%), Gaps = 21/295 (7%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           ++S  + ++Y++  +       +D A  +   + R         +N +L    +      
Sbjct: 44  SSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHT 103

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
              L ++M +   I+P++V+ NILI+ F  +     A + F ++   G  P  I++TTL 
Sbjct: 104 VLYLSQKM-EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLS 162

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           K   L  Q + A  +F + +       D +++  L+ G C++G    A  +++R+  N  
Sbjct: 163 KGLCLKGQIQQA-FLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLV 221

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CEVK--KEGVN 466
            PNV  Y ++ + +   +   EA  L+ E+  +                C +   K+ ++
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAID 281

Query: 467 A-DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +  +   +KPD    + L +   +    ++   +   M + GI PN   Y  +
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 219/509 (43%), Gaps = 57/509 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   + + +L      G+ +  + +FDQ+   G  PDV   ++++    +  R  + + V
Sbjct: 189 PGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEV 248

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE++++ G+   + T+  LV  YVG GD E  E +++ M E       +   + +  Y  
Sbjct: 249 LEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCK 308

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + + D+       EKLL        E  LL      + R+Y  L+ GY   GR+ D VR+
Sbjct: 309 KGKMDEA------EKLL----REVEEDELL----VVDERVYGVLVDGYCQMGRMEDAVRI 354

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M R        + V   T++    K G +  A +V   M    +  +  +YN LL G
Sbjct: 355 RDEMLRV---GLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDG 411

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++ ++ KA  L  EM  D  I P VV+YN +I G + +     AL  ++ M  RG+ P
Sbjct: 412 YCREGKVSKAFMLCEEMLGDG-ITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTP 470

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            +IS  T++  F        A  ++ E+L     K   VA+N ++ G C+MG + EA  +
Sbjct: 471 NEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTK-STVAFNTMISGLCKMGKLMEAGAV 529

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            +RMKE G  P+  TY +L++G        EA  + K + ER                 +
Sbjct: 530 FDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQI-KGVMER---------------QAM 573

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK----------------K 519
               E+ ++L D   +        +++  M+  G+ PN   Y                  
Sbjct: 574 SASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFH 633

Query: 520 IYVEMHSRMFT------SKHASQARQDRR 542
           +Y EM  R FT      SK  S   +D R
Sbjct: 634 LYFEMIERGFTPNVVVCSKIVSSLYRDDR 662



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 115/499 (23%), Positives = 205/499 (41%), Gaps = 55/499 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD  +YN +L+     GK  K   L ++M   G  P V+TYN +IK           + 
Sbjct: 399 KPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALH 458

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +   ++E G+T    +  +++  +   GD + A  + + +    R   K     +     
Sbjct: 459 LWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILG--RGFTKSTVAFNTMISG 516

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G   +   VF+++         E  L     +P+   Y TL  GY   G V +  +
Sbjct: 517 LCKMGKLMEAGAVFDRM--------KELGL-----SPDEITYRTLSDGYCKNGNVQEAFQ 563

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           + G M RQ  +AS      Y +++  L K   ++    +L EM   G+  N +TY  L+ 
Sbjct: 564 IKGVMERQAMSASIE---MYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLIS 620

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI- 353
           G+C + ++DKA  L  EM +     P+VV  + ++      D  + A    ++M    I 
Sbjct: 621 GWCDEQKLDKAFHLYFEMIERG-FTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDIL 679

Query: 354 -APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI-------VAWNMLVEGYCR 405
               K S   +     L +Q K+A         D   K DI       + +N+ ++G C+
Sbjct: 680 AVHNKCSDKLVKNDLTLEAQ-KIA---------DSLDKSDICNSLSNNIVYNIAIDGLCK 729

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
            G ++EA+ ++  +   GF P+  TY +L +  S++    EA  L  E+ E+        
Sbjct: 730 SGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEK-------- 781

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
                    L P+  + +AL +   +     +A  +   + + G+ PN   Y  I +  +
Sbjct: 782 --------GLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTY-NILIGCY 832

Query: 526 SRMFTSKHASQARQDRRRE 544
            R+     AS+ R+    E
Sbjct: 833 CRIGDLDKASRLREKMTEE 851



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/461 (20%), Positives = 184/461 (39%), Gaps = 72/461 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           ML  G  P V  ++TV+  L   G  DD    ++ L+ ++V+R              P+ 
Sbjct: 428 MLGDGITPTVVTYNTVIKGLVDVGSYDD----ALHLWHLMVER-----------GVTPNE 472

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
            +   +L+    +G   + + L+ ++   G     + +N MI    +  +      V +R
Sbjct: 473 ISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDR 532

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           + E+G++    T+++L   Y   G+++ A  I   M               +E Y+S  +
Sbjct: 533 MKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSA-------SIEMYNSLID 585

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G       +F+    N +       +  +  +PN   Y TL+ G+ +E ++     +   
Sbjct: 586 G-------LFKIRKLNDVT-DLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFE 637

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA-------------- 284
           M    +    P+ V  + +VS+L +   +  A  +L +M    + A              
Sbjct: 638 MI---ERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDL 694

Query: 285 ---------------------NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
                                N I YNI + G C+  ++D+A+ +L  +     + PD  
Sbjct: 695 TLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFL-PDNF 753

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI    +  +   A    +EM  +G+ P    Y  L+           A ++F ++
Sbjct: 754 TYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKL 813

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            +   V  + V +N+L+  YCR+G +++A R+ E+M E G 
Sbjct: 814 YQKGLVP-NAVTYNILIGCYCRIGDLDKASRLREKMTEEGI 853



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 33/305 (10%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK----HLLVFVL 116
           YN++++    + K      L  +M   G  P+V+TY  +I       +     HL   ++
Sbjct: 580 YNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMI 639

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           ER     + +C     SL      + D  I+E  V            + + LD +  +  
Sbjct: 640 ERGFTPNVVVCSKIVSSL------YRDDRISEATVI-----------LDKMLDFDILAVH 682

Query: 177 NEGDD---DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           N+  D    +D  +  + + +S++ S     L      N+ +Y   + G    G++ +  
Sbjct: 683 NKCSDKLVKNDLTLEAQKIADSLDKSDICNSL-----SNNIVYNIAIDGLCKSGKLDEAR 737

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  +  +      PD+ TY T++ A   +G++D A ++  EM   G+  N   YN L+
Sbjct: 738 SVLSVLMSR---GFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALI 794

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+   ID+A+ L  ++     + P+ V+YNILI  +  I D   A     +M   GI
Sbjct: 795 NGLCKLGNIDRAQRLFYKLYQKGLV-PNAVTYNILIGCYCRIGDLDKASRLREKMTEEGI 853

Query: 354 APTKI 358
           +   I
Sbjct: 854 STRII 858



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +++L+  F     +  AL  F+EM   G  P   S + L+       + ++A  VFD+++
Sbjct: 159 FDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIV 218

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
               V  D+   +++V  +C++G V+ A  ++E+M + G  PNV TY  L NG
Sbjct: 219 GTGIVP-DVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNG 270



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+LP    + T++   + SG+             V    K  D  +     P+   
Sbjct: 743 LMSRGFLPDNFTYCTLIHACSVSGN-------------VDEAFKLRDEMLEKGLIPNITI 789

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N    LG   +  +LF ++++ G  P+ +TYN++I    R         + E++ 
Sbjct: 790 YNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKASRLREKMT 849

Query: 121 EMGIT 125
           E GI+
Sbjct: 850 EEGIS 854


>gi|242039671|ref|XP_002467230.1| hypothetical protein SORBIDRAFT_01g021710 [Sorghum bicolor]
 gi|241921084|gb|EER94228.1| hypothetical protein SORBIDRAFT_01g021710 [Sorghum bicolor]
          Length = 768

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 151/600 (25%), Positives = 266/600 (44%), Gaps = 69/600 (11%)

Query: 8   PHVKAWSTVVSRLAAS------GDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           P V AWS +++ +  +      G D  +E   LF       RK S+  ++S  KP++  +
Sbjct: 188 PPVAAWSAILAHMCQTNTGAFLGADLVMELGYLFQNNRVDPRKKSNRPLLS-MKPNSFTF 246

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N VL A    G  +K  QL + M   G KP+V    VM  +  R  R+   +  L+R ++
Sbjct: 247 NIVLTASLVFGTTRKAEQLLELMPRIGVKPEVNLLIVMAHIYERNGRRDE-IQKLKRHVD 305

Query: 122 MGITLCMTTFQS----LVAAYVGFGDLEIA-ETIVQAMREGR------------------ 158
               L  + F+     L++ ++ FGDL+ A + ++  +R+G+                  
Sbjct: 306 EACGLSESEFRQFYDCLLSCHLKFGDLDHAVDMVLDMLRKGKNAKRSLEAAKAVLEAVEN 365

Query: 159 RDVCKIIRELDLEDYSSENEGD-------DDDDDEVFE-------KLLPNSINPS----- 199
           R V     + D E+  S N           D+    FE       +LL + +        
Sbjct: 366 RKVYFPYEKTDAENPCSSNSQMLSYASFLKDNSFARFELHARELVRLLTDKLQEQVGLVK 425

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
           SE  +L     P   +Y  L+K ++   ++S  V  L     +ED+    +      V++
Sbjct: 426 SEHGILH----PTETMYAKLVKAFLEADKISALVSFL-VKASKEDSPVSVESSFVVQVIN 480

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           A +  G +++A  +L EM   G+      Y+ LLK YC++ Q +     L + A  A I+
Sbjct: 481 ACISLGLLEQAHDLLDEMRFSGIRVGSSIYSSLLKAYCKEGQHEDDITALLKDAQQAGIQ 540

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
            D   Y  LI       ++ GAL  F E++   +          +   +  ++  L  K+
Sbjct: 541 LDASCYEDLIQSRANHSNTTGALHLFKELKNLNVLKAGHKEFQRLVQGSDDNEAALMTKL 600

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI- 438
            +E+     V   +  WN ++  +C+  L+ +A R + +M+ +G  PN  T+ SL     
Sbjct: 601 VEEVRSGDIVDHAVHEWNNVIHFFCKKRLMHDAHRALNKMRASGHVPNAQTFHSLITAYA 660

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
           ++  K  E   LW E+K         + A S     +K D+ELLD+L    VR  FF +A
Sbjct: 661 AIGGKYVEVTDLWGEMK---------LLASSS---SMKFDQELLDSLLYCFVRGGFFLRA 708

Query: 499 LEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558
           +E++  ME+  +  +K KYK ++++ H  ++  K A + + + + +R+ AA  FK W+GL
Sbjct: 709 MEVIDMMEKREMFIDKYKYKSLWLKYHRTLYKGK-APKVQTEAQLKRREAAIHFKKWIGL 767


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 208/457 (45%), Gaps = 34/457 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V  +S ++  L  SG+  P ++  L + +  +             KP+   
Sbjct: 318 MENAGISPNVYTYSIMIHGLCQSGE--PEKASDLLEEMTTK-----------GLKPNAFV 364

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++     G      ++FD+M +    PD+  YN +I   ++  R         ++ 
Sbjct: 365 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ 424

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+     T+  L+  Y+  GDLE AE +VQ M +       +I    LE Y       
Sbjct: 425 ERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS---- 480

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD ++V           S+   +L +    ++RIY  L+    + G +    R+L  + 
Sbjct: 481 -DDIEKV----------SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEI- 528

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E N S PD   Y++++S L K    ++A  +L EM++ GV  N + YN L+ G C+  
Sbjct: 529 --EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 586

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            I  A+ +   +     + P+ V+Y  LIDG   + D + A   +NEM A GI P    Y
Sbjct: 587 DISYARNVFNSILAKGLV-PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVY 645

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L    + +   + A  + +EM    R    I ++N LV+G+C+ G ++E  +++  + 
Sbjct: 646 SVLTTGCSSAGDLEQAMFLIEEMFL--RGHASISSFNNLVDGFCKRGKMQETLKLLHVIM 703

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             G  PN  T  ++ +G+S A K  E   ++ E++++
Sbjct: 704 GRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 740



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 222/509 (43%), Gaps = 59/509 (11%)

Query: 37  VVVKRVRKFSDPDIV--------SDSKPDT-AAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           +++K +R +  P +V        SDS   + A  + +++     G+ +   ++   M + 
Sbjct: 17  LLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDR 76

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G  P +   N ++K   RA    LL  V E ++  GI+  + T+ +L+ AY    + + A
Sbjct: 77  GLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTA 136

Query: 148 ETIVQAMRE---GRRDVCK--IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202
           + ++  MRE   G   V    +I  L       E  G   D ++                
Sbjct: 137 KKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDY--------------- 181

Query: 203 PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
                   P+   Y  L+ G     R ++   +L  M   E     P+ V Y  ++   +
Sbjct: 182 -----GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE---LKPNVVVYANLIDGFM 233

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           + G+ D A +++ EM   GV  N+ITY+ L++G C+  Q+D+A  LL++M  D+   PD 
Sbjct: 234 REGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSH-RPDT 292

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           ++YN++I+G     +   A    +EM   GI+P   +Y+ ++     S +P+ A+ + +E
Sbjct: 293 ITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 352

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M     +K +   +  L+ GYCR G V  A  I ++M +    P++  Y SL  G+S   
Sbjct: 353 M-TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 411

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
           +  E+   + +++ER                 L P+E     L    ++      A ++V
Sbjct: 412 RVEESTKYFAQMQER----------------GLLPNEFTYSGLIHGYLKNGDLESAEQLV 455

Query: 503 ACMEEHGIPPNKTKYKKIYVEMHSRMFTS 531
             M + G+ PN      IY+++    F S
Sbjct: 456 QRMLDTGLKPNDV----IYIDLLESYFKS 480



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/453 (21%), Positives = 186/453 (41%), Gaps = 36/453 (7%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +  +P+   Y+ ++     +G+  +   L  QM     +PD +TYN++I+   R   K
Sbjct: 249 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNK 308

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +L  +   GI+  + T+  ++      G+ E A  +++ M          +    
Sbjct: 309 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 368

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +  Y    EG+     E+F+K+        ++  +LP  +  NS I+     G    GRV
Sbjct: 369 ISGYC--REGNVSLACEIFDKM--------TKVNVLPDLYCYNSLIF-----GLSKVGRV 413

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            ++ +    M   ++    P+  TY+ ++   +K G ++ A Q++  M   G+  N + Y
Sbjct: 414 EESTKYFAQM---QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 470

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
             LL+ Y +   I+K     + M D   +  + + Y ILI       +   A    +E+ 
Sbjct: 471 IDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI-YGILIHNLSSSGNMEAAFRVLSEIE 529

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G  P    Y++L+     ++  + A  + DEM +   V  +IV +N L++G C+ G +
Sbjct: 530 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKG-VDPNIVCYNALIDGLCKSGDI 588

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
             A+ +   +   G  PN  TY SL +G         A  L+ E+               
Sbjct: 589 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEM--------------- 633

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
            L   + PD  +   L   C  A    +A+ ++
Sbjct: 634 -LATGITPDAFVYSVLTTGCSSAGDLEQAMFLI 665



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 172/403 (42%), Gaps = 25/403 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y A++N      +  +   L D+M     KP+V+ Y  +I    R         +
Sbjct: 185 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 244

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS- 174
           ++ ++  G+     T+ +LV      G ++ A  +++ M         I   L +E +  
Sbjct: 245 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 304

Query: 175 -----------SENEGDDDDDDEVFEKLLPNSINPSSEP--------PLLPKTFAPNSRI 215
                      SE E      +     ++ + +  S EP         +  K   PN+ +
Sbjct: 305 HHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 364

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+ GY  EG VS    +   M +       PD   Y +++  L K G ++ + +  A
Sbjct: 365 YAPLISGYCREGNVSLACEIFDKMTKVN---VLPDLYCYNSLIFGLSKVGRVEESTKYFA 421

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M   G+  N  TY+ L+ GY +   ++ A++L++ M D   ++P+ V Y  L++ +   
Sbjct: 422 QMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTG-LKPNDVIYIDLLESYFKS 480

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           DD     + F  M  +G+      Y  L+   + S   + A +V  E+ ++  V  D+  
Sbjct: 481 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVP-DVHV 539

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           ++ L+ G C+    E+A  I++ M + G  PN+  Y +L +G+
Sbjct: 540 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 582



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 111/526 (21%), Positives = 213/526 (40%), Gaps = 61/526 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P V  +ST++              V+ FD   K + +  +         +T  
Sbjct: 108 MVGAGISPDVYTYSTLIEAYC---------KVREFDTAKKVLVEMRE----RGCGLNTVT 154

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++      G  ++       M ++G  PD  TY  +I    ++ R +    +L+ + 
Sbjct: 155 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 214

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEG 179
              +   +  + +L+  +               MREG  D   K+I+E+     ++  + 
Sbjct: 215 CAELKPNVVVYANLIDGF---------------MREGNADEAFKMIKEM----VAAGVQP 255

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFA-----PNSRIYTTLMKGYMNEGRVSDTVR 234
           +    D +   L    +       LL K        P++  Y  +++G+       D  R
Sbjct: 256 NKITYDNLVRGLC--KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFR 313

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M   E+    P+  TY+ ++  L ++G  ++A  +L EMT  G+  N   Y  L+ 
Sbjct: 314 LLSEM---ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 370

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++  +  A E+  +M     + PD+  YN LI G   +     +  +F +M+ RG+ 
Sbjct: 371 GYCREGNVSLACEIFDKMT-KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 429

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P + +Y+ L+  +  +   + A ++   ML D  +K + V +  L+E Y +   +E+   
Sbjct: 430 PNEFTYSGLIHGYLKNGDLESAEQLVQRML-DTGLKPNDVIYIDLLESYFKSDDIEKVSS 488

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
             + M + G   +   YG L + +S +     A  +  EI++   V              
Sbjct: 489 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSV-------------- 534

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             PD  +  +L     + A   KA  I+  M + G+ PN   Y  +
Sbjct: 535 --PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 578



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/337 (18%), Positives = 135/337 (40%), Gaps = 44/337 (13%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           ++G +P V  +S+++S L  + D       K F ++ +  +K  DP+IV         YN
Sbjct: 530 KNGSVPDVHVYSSLISGLCKTAD-----REKAFGILDEMSKKGVDPNIV--------CYN 576

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A+++     G       +F+ +   G  P+ +TY  +I    +        ++   +L  
Sbjct: 577 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 636

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           GIT     +  L       GDLE      QAM         +I E+ L  ++S +  ++ 
Sbjct: 637 GITPDAFVYSVLTTGCSSAGDLE------QAMF--------LIEEMFLRGHASISSFNNL 682

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
            D       +  ++       ++ +   PN+     ++ G    G++S+   +   ++++
Sbjct: 683 VDGFCKRGKMQETLKLLH--VIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 740

Query: 243 --EDNASHPDHVTYTTVVSALV-------------KAGSMDRARQVLAEMTRIGVPANRI 287
             E  A H   +    +    +             K G++D+A  +   +     P    
Sbjct: 741 TSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCS 800

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           +Y  ++   C++ ++ +A  LL+EM     ++P +V+
Sbjct: 801 SYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA 837


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 190/389 (48%), Gaps = 20/389 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD    N++LN   +  +    + L DQM E G KPD +T+  +I      ++    V 
Sbjct: 145 EPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVA 204

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R+++ G    + T+ ++V      GD ++A  ++  M   + +   +I    ++   
Sbjct: 205 LIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLC 264

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                DD             ++N  +E  +  K   PN   Y++L+    N GR SD  R
Sbjct: 265 KYRHEDD-------------ALNLFTE--MENKGVRPNVITYSSLISCLCNYGRWSDASR 309

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT++ ++ A VK G + +A ++  EM +  +  N  TY+ L+ 
Sbjct: 310 LLSDMIERKIN---PNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLIN 366

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++ +AK++L E+       P+VV+YN LI+GF         +  F EM  RG+ 
Sbjct: 367 GFCMLDRLGEAKQML-ELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLV 425

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++YTTL+  F  +     A  VF +M+    V  +I+ +N+L++G C+ G + +A  
Sbjct: 426 GNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SVGVHPNILTYNILLDGLCKNGKLAKAMV 484

Query: 415 IIERMKENGFYPNVATYGSLANGISLARK 443
           + E ++ +   P++ TY  +  G+  A K
Sbjct: 485 VFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 179/405 (44%), Gaps = 61/405 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L+A A + K    +   ++M   G   ++ TYN++I    R SR  L + +
Sbjct: 76  PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  +     +  A  +V  M E                   
Sbjct: 136 LGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE------------------- 176

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P++  +TTL+ G     + S+ V +
Sbjct: 177 -------------------------------MGYKPDTVTFTTLIHGLFLHNKASEAVAL 205

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M ++      PD VTY  VV+ L K G  D A  +L +M    + AN + Y+ ++  
Sbjct: 206 IDRMVQR---GCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS 262

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+    D A  L  EM ++  + P+V++Y+ LI         + A    ++M  R I P
Sbjct: 263 LCKYRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINP 321

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             ++++ L+ AF    +   A K+++EM++   DP    +I  ++ L+ G+C +  + EA
Sbjct: 322 NLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP----NIFTYSSLINGFCMLDRLGEA 377

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           K+++E M      PNV TY +L NG   A++  + + L++E+ +R
Sbjct: 378 KQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQR 422



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 27/254 (10%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y  +L+     +++D A  L   MA  ++  P ++ ++ L+     ++     ++F  +M
Sbjct: 46  YREVLRTGLSDIELDDAIGLFGVMAQ-SRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKM 104

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCR 405
              GI+    +Y  L+  F   S+  LA  +  +M++   +P    DIV  N L+ G+C 
Sbjct: 105 EILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEP----DIVTLNSLLNGFCH 160

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CE----- 459
              + +A  ++++M E G+ P+  T+ +L +G+ L  K  EA+ L   + +R C+     
Sbjct: 161 GNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220

Query: 460 ----VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK---------ALEIVACME 506
               V       D+DL   L    E     A++ + +              AL +   ME
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280

Query: 507 EHGIPPNKTKYKKI 520
             G+ PN   Y  +
Sbjct: 281 NKGVRPNVITYSSL 294


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 198/428 (46%), Gaps = 25/428 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YN+VL      G   K  ++F +M +FG  PDV ++ ++I    R       + 
Sbjct: 162 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 221

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + +   GI   + +F  L+  +   G ++ A   ++ MR        +I  + +  + 
Sbjct: 222 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFC 281

Query: 175 SENEGDDD---DDDEVFEKLLPNSINPSS-------EPPLL----------PKTFAPNSR 214
                 D     D+ V    LP+ +  ++       E  LL           +   P+  
Sbjct: 282 RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLC 341

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            +TTL+ GY  EG++   +++   M  Q      PD VTY T++  + + G +D+A  + 
Sbjct: 342 TFTTLIHGYCIEGKLDKALQLFDTMLNQR---LRPDIVTYNTLIDGMCRQGDLDKANDLW 398

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M    +  N +TY+IL+  +C++ Q++ A   L EM +   I P++++YN +I G+  
Sbjct: 399 DDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG-ILPNIMTYNSIIKGYCR 457

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
             + +    F  +M    ++P  I+Y TL+  +    +   A K+ + M+   +V+ D+V
Sbjct: 458 SGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLN-MMEKEKVQPDVV 516

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +NML+ G+   G V+EA  I E+M   G  P+  TY S+ NG   A    EA  L  E+
Sbjct: 517 TYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 576

Query: 455 KERCEVKK 462
            +R + K+
Sbjct: 577 LQRGKEKR 584



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 166/365 (45%), Gaps = 36/365 (9%)

Query: 208 TFAPNSRIYT-TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
            F+ NS + T TL     N  +  +  ++   +   E     PD VT+  +V A  +AG 
Sbjct: 86  VFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGD 145

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            + A  ++  M   G+    +TYN +LKG C+    DKA E+ +EM DD  + PDV S+ 
Sbjct: 146 AEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM-DDFGVAPDVRSFT 204

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILI GF  + +   AL  + EMR RGI P  +S++ L+  FA   +   A     EM R 
Sbjct: 205 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM-RC 263

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  D V + M++ G+CR GL+ +A R+ + M   G  P+V TY +L NG+   R+  +
Sbjct: 264 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 323

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  L  E++ER             +PP L     L+      C+      KAL++   M 
Sbjct: 324 AEGLLNEMRER------------GVPPDLCTFTTLIHGY---CIEGK-LDKALQLFDTML 367

Query: 507 EHGIPPNKTKYKK----------------IYVEMHSRMFTSKHASQA-RQDRRRERKRAA 549
              + P+   Y                  ++ +MHSR     H + +   D   E+ +  
Sbjct: 368 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 427

Query: 550 EAFKF 554
           +AF F
Sbjct: 428 DAFGF 432



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 140/609 (22%), Positives = 254/609 (41%), Gaps = 98/609 (16%)

Query: 16  VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD-------------------------- 49
           +VS L  S    P    ++FD++++   +   P                           
Sbjct: 12  IVSSLLGS---SPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLA 68

Query: 50  ------------------IVSDSKPDTAAYN-AVLNACANLGKPKKFLQLFDQMHEFGAK 90
                               S+S+ +T   N  V N C  L +  K   +  +M +    
Sbjct: 69  ALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKAL-EFDKVDAVISEMEKRCVF 127

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           PDV+T+NVM+    RA      + +++ ++  G+   + T+ S++      G  + A  +
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 187

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS-SEPPLLPKTF 209
            + M +    V   +R   +        G+ ++  ++++++    I P       L   F
Sbjct: 188 FKEMDD--FGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLF 245

Query: 210 A---------------------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
           A                     P+  IYT ++ G+   G +SD +R+   M         
Sbjct: 246 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEM---VGCGCL 302

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD VTY T+++ L K   +  A  +L EM   GVP +  T+  L+ GYC + ++DKA +L
Sbjct: 303 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 362

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
              M +  ++ PD+V+YN LIDG     D   A   +++M +R I P  ++Y+ L+ +  
Sbjct: 363 FDTMLNQ-RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 421

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              Q + A    DEM+ +  +  +I+ +N +++GYCR G V + ++ +++M  N   P++
Sbjct: 422 EKGQVEDAFGFLDEMI-NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDL 480

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY +L +G     K  +A  L   +      +KE V          +PD    + L + 
Sbjct: 481 ITYNTLIHGYIKEDKMHDAFKLLNMM------EKEKV----------QPDVVTYNMLING 524

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD---RRRER 545
                  ++A  I   M   GI P++  Y  + +  H     SK A Q   +   R +E+
Sbjct: 525 FSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSM-INGHVTAGNSKEAFQLHDEMLQRGKEK 583

Query: 546 KRAAEAFKF 554
           +RAA   +F
Sbjct: 584 RRAAGTVQF 592



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 132/327 (40%), Gaps = 41/327 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVV-KRVRKFSDPDIVSDSKPDTA 59
           M   G  P +  ++T++      G     ++++LFD ++ +R+R            PD  
Sbjct: 331 MRERGVPPDLCTFTTLIHGYCIEGKLD--KALQLFDTMLNQRLR------------PDIV 376

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER 118
            YN +++     G   K   L+D MH     P+ +TY+++I   C +   +    F L+ 
Sbjct: 377 TYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF-LDE 435

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           ++  GI   + T+ S++  Y   G++   +  +Q M   +     I     +  Y  E++
Sbjct: 436 MINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDK 495

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
             D      F KLL        +P ++          Y  L+ G+   G V +   +   
Sbjct: 496 MHD-----AF-KLLNMMEKEKVQPDVV---------TYNMLINGFSVHGNVQEAGWIFEK 540

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      PD  TY ++++  V AG+   A Q+  EM + G    R        G  Q
Sbjct: 541 MCAK---GIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAA------GTVQ 591

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSY 325
            + I  + E L++M  D K+   +  +
Sbjct: 592 FVNIQNSAESLKQMPMDLKVTCSIYFF 618


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 197/408 (48%), Gaps = 29/408 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +LN  A + K    + L   +   G   D+ T N+++    ++S+  L    
Sbjct: 69  PSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSF 128

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
           L +++++G    + TF SL+  +     +E A ++V  M E   + DV      +D    
Sbjct: 129 LGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIID---- 184

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S    G  D+   +F ++    I P             +  +YT+L+ G  N GR  D  
Sbjct: 185 SLCKNGHVDNALSLFNQMENYGIRP-------------DVVMYTSLVNGLCNSGRWRDAD 231

Query: 234 RML-GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +L G M+R+      PD +T+  ++ A VK G +  A+++  EM ++ +  N  TY  L
Sbjct: 232 LLLRGMMKRK----IKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSL 287

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C + ++D+A+++   M       PDVV+Y  LI+GF        A+  F EM  +G
Sbjct: 288 INGLCMEGRLDEARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKG 346

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +    I+YTTL++ F L  +P +A +VF  M+    V  +I  +N+L+   C  G V +A
Sbjct: 347 LTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRG-VPPNIRTYNVLLHCLCYNGKVNKA 405

Query: 413 KRIIERMKE---NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             I E M++   +G  PN+ TY  L +G+    K  +AL+++ ++++R
Sbjct: 406 LMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKR 453



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 194/408 (47%), Gaps = 29/408 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
           +PD   + +++N      + ++ + + +QM E G KPDV+ Y  +I  LC      + L 
Sbjct: 138 EPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALS 197

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLE 171
            +  ++   GI   +  + SLV      G    A+ +++ M  R+ + DV      +D  
Sbjct: 198 -LFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALID-- 254

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             +   EG   D  E++ +++  SI             APN   YT+L+ G   EGR+ +
Sbjct: 255 --AFVKEGKLLDAKELYNEMIQMSI-------------APNIFTYTSLINGLCMEGRLDE 299

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             +M   M   E     PD V YT++++   K   ++ A ++  EM++ G+  N ITY  
Sbjct: 300 ARQMFYLM---ETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTT 356

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L++G+    + + A+E+   M     + P++ +YN+L+           AL  F +M+ R
Sbjct: 357 LIQGFGLVGKPNVAQEVFGHMVSRG-VPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKR 415

Query: 352 ---GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
              G+ P   +Y  L+     + + + A  VF +M +   + + I+ + ++++G C+ G 
Sbjct: 416 EIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDM-QKRDMDIGIITYTIIIQGMCKAGK 474

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           V++A  +   +   G  PNV TY ++ +G+       EA +L++++KE
Sbjct: 475 VKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKE 522



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 150/374 (40%), Gaps = 65/374 (17%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y  ++++    G     L LF+QM  +G +PDV+ Y  ++     + R      
Sbjct: 173 KPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADL 232

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREGRRDVCKIIRELD 169
           +L  +++  I   + TF +L+ A+V  G L  A     E I  ++         +I  L 
Sbjct: 233 LLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLC 292

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +E       G  D+  ++F               +  K   P+   YT+L+ G+    +V
Sbjct: 293 ME-------GRLDEARQMFY-------------LMETKGCFPDVVAYTSLINGFCKCKKV 332

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D +++   M ++       + +TYTT++      G  + A++V   M   GVP N  TY
Sbjct: 333 EDAMKIFYEMSQKGLTG---NTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTY 389

Query: 290 NILLKGYCQQLQIDKAKELLREMA--DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           N+LL   C   +++KA  +  +M   +   + P++ +YN+L+ G         AL  F +
Sbjct: 390 NVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGD 449

Query: 348 MRAR-----------------------------------GIAPTKISYTTLMKAFALSSQ 372
           M+ R                                   G+ P  ++YTT++        
Sbjct: 450 MQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGL 509

Query: 373 PKLANKVFDEMLRD 386
              A+ +F +M  D
Sbjct: 510 MLEAHVLFRKMKED 523



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 40/252 (15%)

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           R   V+A+M +  V  N           C+ LQI               +  D+ + N+L
Sbjct: 76  RLLNVIAKMKKFDVVIN----------LCKHLQI-------------MGVSNDLYTCNLL 112

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ++ F        A +F  ++   G  P   ++T+L+  F L ++ + A  + ++M+ +  
Sbjct: 113 MNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMV-EMG 171

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +K D+V +  +++  C+ G V+ A  +  +M+  G  P+V  Y SL NG+  + +  +A 
Sbjct: 172 IKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 231

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
           LL + + +R                 +KPD    +AL D  V+      A E+   M + 
Sbjct: 232 LLLRGMMKR----------------KIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQM 275

Query: 509 GIPPNKTKYKKI 520
            I PN   Y  +
Sbjct: 276 SIAPNIFTYTSL 287



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL  F+ M      P+ I +T L+   A   +  +   +    L+   V  D+   N+L+
Sbjct: 55  ALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKH-LQIMGVSNDLYTCNLLM 113

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             +C+      A   + ++ + GF P++ T+ SL NG  L  +  EA+ +  ++ E    
Sbjct: 114 NCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEM--- 170

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                         +KPD  +   + D   +      AL +   ME +GI P+   Y  +
Sbjct: 171 -------------GIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSL 217


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 195/423 (46%), Gaps = 25/423 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YN+VL      G   K  ++F +M +FG  PDV ++ ++I    R       + 
Sbjct: 223 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 282

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + +   GI   + +F  L+  +   G ++ A   ++ MR        +I  + +  + 
Sbjct: 283 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFC 342

Query: 175 SENEGDDD---DDDEVFEKLLPNSINPSS-------EPPLL----------PKTFAPNSR 214
                 D     D+ V    LP+ +  ++       E  LL           +   P+  
Sbjct: 343 RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLC 402

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            +TTL+ GY  EG++   +++   M  Q      PD VTY T++  + + G +D+A  + 
Sbjct: 403 TFTTLIHGYCIEGKLDKALQLFDTMLNQR---LRPDIVTYNTLIDGMCRQGDLDKANDLW 459

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M    +  N +TY+IL+  +C++ Q++ A   L EM +   I P++++YN +I G+  
Sbjct: 460 DDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG-ILPNIMTYNSIIKGYCR 518

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
             + +    F  +M    ++P  I+Y TL+  +    +   A K+ + M+   +V+ D+V
Sbjct: 519 SGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLN-MMEKEKVQPDVV 577

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +NML+ G+   G V+EA  I E+M   G  P+  TY S+ NG   A    EA  L  E+
Sbjct: 578 TYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 637

Query: 455 KER 457
            +R
Sbjct: 638 LQR 640



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 166/365 (45%), Gaps = 36/365 (9%)

Query: 208 TFAPNSRIYT-TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
            F+ NS + T TL     N  +  +  ++   +   E     PD VT+  +V A  +AG 
Sbjct: 147 VFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGD 206

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            + A  ++  M   G+    +TYN +LKG C+    DKA E+ +EM DD  + PDV S+ 
Sbjct: 207 AEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM-DDFGVAPDVRSFT 265

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILI GF  + +   AL  + EMR RGI P  +S++ L+  FA   +   A     EM R 
Sbjct: 266 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM-RC 324

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  D V + M++ G+CR GL+ +A R+ + M   G  P+V TY +L NG+   R+  +
Sbjct: 325 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 384

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  L  E++ER             +PP L     L+      C+      KAL++   M 
Sbjct: 385 AEGLLNEMRER------------GVPPDLCTFTTLIHGY---CIEGK-LDKALQLFDTML 428

Query: 507 EHGIPPNKTKYKK----------------IYVEMHSRMFTSKHASQA-RQDRRRERKRAA 549
              + P+   Y                  ++ +MHSR     H + +   D   E+ +  
Sbjct: 429 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 488

Query: 550 EAFKF 554
           +AF F
Sbjct: 489 DAFGF 493



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 210/489 (42%), Gaps = 78/489 (15%)

Query: 16  VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD-------------------------- 49
           +VS L  S    P    ++FD++++   +   P                           
Sbjct: 73  IVSSLLGS---SPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLA 129

Query: 50  ------------------IVSDSKPDTAAYN-AVLNACANLGKPKKFLQLFDQMHEFGAK 90
                               S+S+ +T   N  V N C  L +  K   +  +M +    
Sbjct: 130 ALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKAL-EFDKVDAVISEMEKRCVF 188

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           PDV+T+NVM+    RA      + +++ ++  G+   + T+ S++      G  + A  +
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 248

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS-SEPPLLPKTF 209
            + M +    V   +R   +        G+ ++  ++++++    I P       L   F
Sbjct: 249 FKEMDD--FGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLF 306

Query: 210 A---------------------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
           A                     P+  IYT ++ G+   G +SD +R+   M         
Sbjct: 307 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEM---VGCGCL 363

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD VTY T+++ L K   +  A  +L EM   GVP +  T+  L+ GYC + ++DKA +L
Sbjct: 364 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 423

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
              M +  ++ PD+V+YN LIDG     D   A   +++M +R I P  ++Y+ L+ +  
Sbjct: 424 FDTMLNQ-RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 482

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              Q + A    DEM+ +  +  +I+ +N +++GYCR G V + ++ +++M  N   P++
Sbjct: 483 EKGQVEDAFGFLDEMI-NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDL 541

Query: 429 ATYGSLANG 437
            TY +L +G
Sbjct: 542 ITYNTLIHG 550



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 13/143 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP++  +++++     SG+             V + +KF    +V+   PD   
Sbjct: 497 MINKGILPNIMTYNSIIKGYCRSGN-------------VSKGQKFLQKMMVNKVSPDLIT 543

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++      K     +L + M +   +PDV+TYN++I   +         ++ E++ 
Sbjct: 544 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 603

Query: 121 EMGITLCMTTFQSLVAAYVGFGD 143
             GI     T+ S++  +V  G+
Sbjct: 604 AKGIEPDRYTYMSMINGHVTAGN 626


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 228/493 (46%), Gaps = 46/493 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ GY P    ++T++  L   G     E+V L D +V+           +  +PD   
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGK--VSEAVVLVDRMVE-----------NGCQPDVVT 195

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++N     G     L L  +M E   K DV TY+ +I    R       + + + + 
Sbjct: 196 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME 255

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+ SLV      G       +++ M   R  V  +I    L D   + EG 
Sbjct: 256 TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVK-EGK 313

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +E++++++   I             +PN   Y TLM GY  + R+S+   ML  M 
Sbjct: 314 LQEANELYKEMITRGI-------------SPNIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N   PD VT+T+++        +D   +V   +++ G+ AN +TY+IL++G+CQ  
Sbjct: 361 R---NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I  A+EL +EM     + PDV++Y IL+DG         AL  F +++   +    + Y
Sbjct: 418 KIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TT+++      + + A  +F   L    VK +++ + +++ G C+ G + EA  ++ +M+
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCS-LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS-------DLPP 473
           E+G  PN  TY +L   I    + G+     K I+   E+K  G +AD+       D+  
Sbjct: 536 EDGNAPNDCTYNTL---IRAHLRDGDLTASAKLIE---EMKSCGFSADASSIKMVIDMLL 589

Query: 474 PLKPDEELLDALA 486
             + D+  LD L+
Sbjct: 590 SGELDKSFLDMLS 602



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 124/532 (23%), Positives = 234/532 (43%), Gaps = 60/532 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RS  LP +  +S   S +A +         K F++V+   ++     I  +       
Sbjct: 79  MIRSRPLPSLVDFSRFFSAIART---------KQFNLVLDFCKQLELNGIAHN----IYT 125

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++N      K      +  ++ + G +PD  T+N +IK      +    V +++R++
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
           E G    + T+ S+V      GD  +A  +++ M E  R+V     + D+  YS+     
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE--RNV-----KADVFTYSTIIDSL 238

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G  D    +F+++    I  S                Y +L++G    G+ +D   +
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVT-------------YNSLVRGLCKAGKWNDGALL 285

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  +E     P+ +T+  ++   VK G +  A ++  EM   G+  N ITYN L+ G
Sbjct: 286 LKDMVSRE---IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 342

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC Q ++ +A  +L  M  + K  PD+V++  LI G+ ++      +  F  +  RG+  
Sbjct: 343 YCMQNRLSEANNMLDLMVRN-KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVA 401

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y+ L++ F  S + KLA ++F EM+    V  D++ + +L++G C  G +E+A  I
Sbjct: 402 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALEI 460

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            E ++++     +  Y ++  G+    K  +A  L+      C +  +GV          
Sbjct: 461 FEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF------CSLPCKGV---------- 504

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           KP+      +     +     +A  ++  MEE G  PN   Y  + +  H R
Sbjct: 505 KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL-IRAHLR 555


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 200/451 (44%), Gaps = 61/451 (13%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD  +Y+ V+N     G+  K  +L + M   G KP+   Y  +I L  R  +       
Sbjct: 722  PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 781

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
               ++  GI      + +L+  +   GD+  A      M    RD+       D+  Y++
Sbjct: 782  FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS--RDITP-----DVLTYTA 834

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               G     D V    L +         +  K   P+S  +T L+ GY   G + D  R+
Sbjct: 835  IISGFCQIGDMVEAGKLFHE--------MFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 886

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               M +       P+ VTYTT++  L K G +D A ++L EM +IG+  N  TYN ++ G
Sbjct: 887  HNHMIQA---GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 943

Query: 296  -----------------------------------YCQQLQIDKAKELLREMADDAKIEP 320
                                               YC+  ++DKA+E+L+EM     ++P
Sbjct: 944  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG-LQP 1002

Query: 321  DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
             +V++N+L++GF L           N M A+GIAP   ++ +L+K + + +  K A  ++
Sbjct: 1003 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY 1062

Query: 381  DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             +M     V  D   +  LV+G+C+   ++EA  + + MK  GF  +V+TY  L  G   
Sbjct: 1063 KDMCSRG-VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLK 1121

Query: 441  ARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
             +K  EA    +E+ +  ++++EG+ AD ++
Sbjct: 1122 RKKFLEA----REVFD--QMRREGLAADKEI 1146



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 185/401 (46%), Gaps = 31/401 (7%)

Query: 80   LFDQMHEFGAKPDVLTYNVMIKLCARASR---KHLLVFVLERILEMGITLCMTTFQSLVA 136
            +F +  E G   +V +YN++I    +  R    H L+ ++E     G T  + ++ ++V 
Sbjct: 676  VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMEL---KGYTPDVISYSTVVN 732

Query: 137  AYVGFGDLEIAETIVQAM-REGRRD-----------VCKIIRELDLEDYSSENEGDDDDD 184
             Y  FG+L+    +++ M R+G +            +C+I +  + E+  SE        
Sbjct: 733  GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 792

Query: 185  DEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLMKGYMNEGRVSDTVRML 236
            D V    L +      +     K F         P+   YT ++ G+   G + +  ++ 
Sbjct: 793  DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 852

Query: 237  GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              M  +      PD VT+T +++   KAG M  A +V   M + G   N +TY  L+ G 
Sbjct: 853  HEMFCK---GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 909

Query: 297  CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            C++  +D A ELL EM     ++P++ +YN +++G     +   A+    E  A G+   
Sbjct: 910  CKEGDLDSANELLHEMWKIG-LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 968

Query: 357  KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             ++YTTLM A+  S +   A ++  EML    ++  IV +N+L+ G+C  G++E+ ++++
Sbjct: 969  TVTYTTLMDAYCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1027

Query: 417  ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              M   G  PN  T+ SL     +      A  ++K++  R
Sbjct: 1028 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 1068



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 181/424 (42%), Gaps = 68/424 (16%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M+R G LP    ++T++      GD             ++   KF       D  PD   
Sbjct: 785  MIRQGILPDTVVYTTLIDGFCKRGD-------------IRAASKFFYEMHSRDITPDVLT 831

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            Y A+++    +G   +  +LF +M   G +PD +T+  +I    +A        V   ++
Sbjct: 832  YTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 891

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            + G +  + T+ +L+                         +CK              EGD
Sbjct: 892  QAGCSPNVVTYTTLIDG-----------------------LCK--------------EGD 914

Query: 181  DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D  +E+  ++    + P             N   Y +++ G    G + + V+++G   
Sbjct: 915  LDSANELLHEMWKIGLQP-------------NIFTYNSIVNGLCKSGNIEEAVKLVGEFE 961

Query: 241  RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                NA   D VTYTT++ A  K+G MD+A+++L EM   G+    +T+N+L+ G+C   
Sbjct: 962  AAGLNA---DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 1018

Query: 301  QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
             ++  ++LL  M     I P+  ++N L+  + + ++   A   + +M +RG+ P   +Y
Sbjct: 1019 MLEDGEKLLNWMLAKG-IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 1077

Query: 361  TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              L+K    +   K A  +F EM +     V +  +++L++G+ +     EA+ + ++M+
Sbjct: 1078 ENLVKGHCKARNMKEAWFLFQEM-KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMR 1136

Query: 421  ENGF 424
              G 
Sbjct: 1137 REGL 1140


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 220/472 (46%), Gaps = 38/472 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D   +N ++N  + LG       +F  + + G +P+ +T   +IK LC +      L F 
Sbjct: 90  DLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHF- 148

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            ++++ +G  L    + +L+      G    A  ++      RR   K+++  ++  Y++
Sbjct: 149 HDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLL------RRVDGKLVQP-NVVMYNT 201

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                   D     KL+  + +  SE  ++ K  +P+   Y+ L+ G+   G+++D + +
Sbjct: 202 I------IDSMCKVKLVNEAFDLYSE--MVSKGISPDVVTYSALISGFCILGKLNDAIGL 253

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +E N   PD  T++ +V    K G +  A+ VLA M + G+  + +TY  L+ G
Sbjct: 254 FNKMISEEIN---PDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDG 310

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC   Q++KAK +   MA    +  +V SYNI+I+GF  I     A+  F EM  + I P
Sbjct: 311 YCLVKQVNKAKSIFNTMAQGG-VTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIP 369

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y +L+     S +   A K+ DEM  D  V  D + +N +++  C+   V++A  +
Sbjct: 370 DVVTYNSLIDGLCKSGKISYALKLVDEM-HDRGVPHDKITYNSILDALCKNHQVDKAIAL 428

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           + +MK+ G  P++ TY  L +G+    +  +A    + I E   VK   +   +      
Sbjct: 429 LTKMKDEGIQPDMYTYTILIDGLCKGGRLKDA----QNIFEDLLVKGYNITVYT------ 478

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
                ++    D       F KAL +++ ME++G  PN   Y+ I + +  +
Sbjct: 479 --YTVMIQGFCD----NDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEK 524



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/466 (21%), Positives = 191/466 (40%), Gaps = 103/466 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P+    +T++  L   G              + +   F D  +      +   
Sbjct: 117 ILKKGYEPNAITLTTLIKGLCLKGQ-------------IHQALHFHDKVVALGFHLNKVC 163

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G+    LQL  ++     +P+V+ YN +I    +    +    +   ++
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 223

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ +L++ +   G L                                    
Sbjct: 224 SKGISPDVVTYSALISGFCILGKL------------------------------------ 247

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +D   +F K++   INP             +   ++ L+ G+  EGRV +   +L  M 
Sbjct: 248 -NDAIGLFNKMISEEINP-------------DVYTFSILVDGFCKEGRVKEAKNVLAMMM 293

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q      PD VTY +++        +++A+ +   M + GV AN  +YNI++ G+C+  
Sbjct: 294 KQ---GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIK 350

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+A  L +EM     I PDVV+YN LIDG       + AL   +EM  RG+   KI+Y
Sbjct: 351 KVDEAMNLFKEM-HCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITY 409

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE--- 417
            +++ A   + Q   A  +  +M +D  ++ D+  + +L++G C+ G +++A+ I E   
Sbjct: 410 NSILDALCKNHQVDKAIALLTKM-KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLL 468

Query: 418 --------------------------------RMKENGFYPNVATY 431
                                           +M++NG  PN  TY
Sbjct: 469 VKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTY 514



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 179/405 (44%), Gaps = 75/405 (18%)

Query: 173 YSSENEGDDDDDDEV---FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           YS  +    DD+  +   F ++L  +INP+  PP+         +I  +L+K    +  +
Sbjct: 26  YSQLHHHHQDDEHSLVSSFNRIL--NINPT--PPIFEF-----GKILGSLVKINCYQTAI 76

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           S         R  E N    D VT+  +++   + G    +  V A + + G   N IT 
Sbjct: 77  S-------LHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITL 129

Query: 290 NILLKGYCQQLQIDK-----------------------------------AKELLREMAD 314
             L+KG C + QI +                                   A +LLR + D
Sbjct: 130 TTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRV-D 188

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
              ++P+VV YN +ID    +     A   ++EM ++GI+P  ++Y+ L+  F +  +  
Sbjct: 189 GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLN 248

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A  +F++M+ +  +  D+  +++LV+G+C+ G V+EAK ++  M + G  P+V TY SL
Sbjct: 249 DAIGLFNKMISE-EINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSL 307

Query: 435 ANGISLARKPGEALLLWKE----------------IKERCEVKK--EGVNADSDLP-PPL 475
            +G  L ++  +A  ++                  I   C++KK  E +N   ++    +
Sbjct: 308 MDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNI 367

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            PD    ++L D   ++     AL++V  M + G+P +K  Y  I
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSI 412



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 156/370 (42%), Gaps = 45/370 (12%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKL----FDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           P+V  ++T++  +           VKL    FD+  + V K   PD+V+        Y+A
Sbjct: 194 PNVVMYNTIIDSMC---------KVKLVNEAFDLYSEMVSKGISPDVVT--------YSA 236

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++    LGK    + LF++M      PDV T+++++    +  R      VL  +++ G
Sbjct: 237 LISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQG 296

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIRELDLE 171
           I   + T+ SL+  Y     +  A++I   M +G                CKI +  +  
Sbjct: 297 IKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAM 356

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF-------APNSRI-YTTLMKGY 223
           +   E    +   D V    L + +  S +     K          P+ +I Y +++   
Sbjct: 357 NLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDAL 416

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
               +V   + +L  M+   D    PD  TYT ++  L K G +  A+ +  ++   G  
Sbjct: 417 CKNHQVDKAIALLTKMK---DEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYN 473

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
               TY ++++G+C     DKA  LL +M D+  I P+  +Y I+I      D++  A  
Sbjct: 474 ITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCI-PNAKTYEIIILSLFEKDENDMAEK 532

Query: 344 FFNEMRARGI 353
              EM ARG+
Sbjct: 533 LLREMIARGL 542



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 129/308 (41%), Gaps = 19/308 (6%)

Query: 211 PNSR-IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           PN + I +T +   ++     D   ++ +  R  +    P    +  ++ +LVK      
Sbjct: 15  PNPKFIISTSLYSQLHHHHQDDEHSLVSSFNRILNINPTPPIFEFGKILGSLVKINCYQT 74

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +  EM   G+ ++ +T+NIL+  + Q      +  +   +      EP+ ++   LI
Sbjct: 75  AISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKG-YEPNAITLTTLI 133

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G  L      AL F +++ A G    K+ Y TL+       Q   A ++    +    V
Sbjct: 134 KGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRR-VDGKLV 192

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           + ++V +N +++  C++ LV EA  +   M   G  P+V TY +L +G  +  K  +A+ 
Sbjct: 193 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIG 252

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L+ ++                +   + PD      L D   +    ++A  ++A M + G
Sbjct: 253 LFNKM----------------ISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQG 296

Query: 510 IPPNKTKY 517
           I P+   Y
Sbjct: 297 IKPDVVTY 304


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/558 (23%), Positives = 228/558 (40%), Gaps = 90/558 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRL--AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           +L SG  P   A+++++  L  A S DD    + +LF  + +R              P  
Sbjct: 36  LLHSGVTPSTVAYTSLIHGLCMANSFDD----ARELFADMNRR-----------GCPPSP 80

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YN +++A    G  ++   L  +M E G  PDV+TYN ++    ++ R    + +   
Sbjct: 81  VTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNE 140

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +  +G T    +  +++        ++ A              C++  E++  D      
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQA--------------CQVFHEMEARD------ 180

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                                           P+S  Y  L+ G    G++++  ++   
Sbjct: 181 ------------------------------IPPDSWSYGILIDGLAKAGKLNEAYKLF-- 208

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            RR  D+   P  VTY  V+  +  A ++D A ++   M   G   +R T+NIL+  +C+
Sbjct: 209 -RRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCK 267

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++D+A  LL+ M DD  + PDVV+Y+ LI G   I     A     +M  R   PT +
Sbjct: 268 RGKMDEAFRLLKRMTDDGHV-PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV 326

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +  TL+     + + K A +V D M+   +   D+V +N LV G+CR G  E A+ ++  
Sbjct: 327 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQ-SPDVVTYNTLVHGHCRAGQTERARELLSD 385

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M   G  PNV TY +L +G+  A +  EA  ++ ++K             S   P L   
Sbjct: 386 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS------------SGCAPNLFTY 433

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
             L+         A      L++   M   GI P+   Y  +  E+     +++     R
Sbjct: 434 TALILGFCS----AGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILR 489

Query: 539 QDRRRERKRA--AEAFKF 554
           + R   R  A   E ++F
Sbjct: 490 EGRESLRSEAWGDEVYRF 507



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 176/385 (45%), Gaps = 46/385 (11%)

Query: 179 GDDDDDDEVFEKLLPNSINPSS-------EPPLLPKTF---------------APNSRIY 216
           G  +D  ++F+KLL + + PS+           +  +F                P+   Y
Sbjct: 24  GKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTY 83

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++      G + +   ++   ++  ++   PD VTY TV+  L K+G ++ A  +  E
Sbjct: 84  NVIIDASCKRGMLEEACDLI---KKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNE 140

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R+G   NR ++N ++ G CQQ +ID+A ++  EM +   I PD  SY ILIDG     
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EARDIPPDSWSYGILIDGLAKAG 199

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A   F  M   GI P+ ++Y  ++    L+     A ++F  M R    +     +
Sbjct: 200 KLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM-RSKGCRPSRFTF 258

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI-SLARKPGEALLLWKEIK 455
           N+L++ +C+ G ++EA R+++RM ++G  P+V TY +L +G+ S+AR      LL   +K
Sbjct: 259 NILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 318

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            +C+             P +     L+  L     +A   ++A E++  M   G  P+  
Sbjct: 319 RQCK-------------PTVVTQNTLIHGLC----KAGRIKEAREVLDAMVSSGQSPDVV 361

Query: 516 KYKKIYVEMHSRMFTSKHASQARQD 540
            Y  + V  H R   ++ A +   D
Sbjct: 362 TYNTL-VHGHCRAGQTERARELLSD 385



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 138/252 (54%), Gaps = 7/252 (2%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +  +P+S  Y  L+ G    G+++D   +    ++   +   P  V YT+++  L  A S
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARDLF---QKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            D AR++ A+M R G P + +TYN+++   C++  +++A +L+++M +D  + PDVV+YN
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHV-PDVVTYN 119

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LR 385
            ++DG         AL  FNEM   G  P + S+ T++      S+   A +VF EM  R
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAR 179

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D  +  D  ++ +L++G  + G + EA ++  RM ++G  P+  TY  + +G+ LA    
Sbjct: 180 D--IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLD 237

Query: 446 EALLLWKEIKER 457
           EAL L+K ++ +
Sbjct: 238 EALELFKSMRSK 249



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 187/481 (38%), Gaps = 85/481 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRV-----RKFSDPDIVS--- 52
           M+  G++P V  ++TV+  L  SG    VE   L    ++R+     R+  +  I+    
Sbjct: 106 MIEDGHVPDVVTYNTVMDGLCKSGR---VEEALLLFNEMERLGCTPNRRSHNTIILGLCQ 162

Query: 53  -----------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
                            D  PD+ +Y  +++  A  GK  +  +LF +M + G  P  +T
Sbjct: 163 QSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVT 222

Query: 96  YNVMIK-LCARASRKHLLVFVLERILEM-------GITLCMTTFQSLVAAYVGFGDLEIA 147
           YNV+I  +C        L + L+  LE+       G      TF  L+ A+   G ++ A
Sbjct: 223 YNVVIHGMC--------LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEA 274

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEG-----DDDDDDEVFEKLLPNSINPSSEP 202
             +++ M +            D+  YS+   G       DD   + E ++     P+   
Sbjct: 275 FRLLKRMTDDGH-------VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVT 327

Query: 203 ----------------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                  ++    +P+   Y TL+ G+   G+      +L  M 
Sbjct: 328 QNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMV 387

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+ VTYT +VS L KA  +  A  V A+M   G   N  TY  L+ G+C   
Sbjct: 388 AR---GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAG 444

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA--RGIAPTKI 358
           Q+D   +L  EM   A I PD V Y  L         SA AL    E R   R  A    
Sbjct: 445 QVDGGLKLFGEMV-CAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDE 503

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            Y   +     + + ++A     +M+R  ++       + LV G C+ G   EA+ ++E 
Sbjct: 504 VYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCAS-LVAGLCKSGQGGEARAVLEE 562

Query: 419 M 419
           +
Sbjct: 563 I 563



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 32/236 (13%)

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
           ++  + PD  SY ILIDG         A   F ++   G+ P+ ++YT+L+    +++  
Sbjct: 2   NERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSF 61

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             A ++F +M R        V +N++++  C+ G++EEA  +I++M E+G  P+V TY +
Sbjct: 62  DDARELFADMNRRG-CPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 434 LANGISLARKPGEALLLWKE-------------------------IKERCEVKKEGVNAD 468
           + +G+  + +  EALLL+ E                         I + C+V  E     
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHE--MEA 178

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            D+PP       L+D LA    +A    +A ++   M + GI P+   Y  +   M
Sbjct: 179 RDIPPDSWSYGILIDGLA----KAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGM 230


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 134/543 (24%), Positives = 235/543 (43%), Gaps = 67/543 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P V  ++ V+  L         E  KLFD ++ R              P+   
Sbjct: 208 MKRGGVSPGVFVYNVVIGGLCKEKRMKDAE--KLFDEMLDR-----------RVAPNRIT 254

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++    +G+ ++   + ++M     +P ++T+N ++    RA        VLE + 
Sbjct: 255 YNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEME 314

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ-AMREGRRDVCKIIRELDLEDYSSE--- 176
             G      T+ +L   ++  G+++ + T+ + A+R+G          + + DY+     
Sbjct: 315 VYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKG----------VQILDYTCSILL 364

Query: 177 ----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                EG+ +  +EV +K L N +             AP    + T++ GY    +V D 
Sbjct: 365 NALCKEGNMEKAEEVLKKFLENGL-------------APVGVFFNTIVNGYC---QVGDI 408

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +    + + E     P+HVTY ++V    +  +M+ A + + +M   GV  N  TYN L
Sbjct: 409 NKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTL 468

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + GY +    D+  ++L EM +   ++P+V+SY  LI+      +   A     +M  RG
Sbjct: 469 IDGYGRSCLFDRCFQILEEM-EKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRG 527

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P    Y  L+    ++ + K A + FDEM+    V   +V +N+L+ G C+ G V EA
Sbjct: 528 VVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPT-LVTYNILINGLCKKGKVMEA 586

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CE 459
           + +   +   G   +V TY SL +G S A    +AL L++ +K+                
Sbjct: 587 ENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAG 646

Query: 460 VKKEGVNA-----DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
             KEG+          L   L PD  + +AL    V     +KA  + + ME  GI P+K
Sbjct: 647 CGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDK 706

Query: 515 TKY 517
             Y
Sbjct: 707 MTY 709



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 186/449 (41%), Gaps = 57/449 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N ++N    +G   K     ++M   G +P+ +TYN ++K              
Sbjct: 390 PVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKC 449

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +++++E G+   + T+ +L+    G+G   + +   Q + E  +   K ++   +     
Sbjct: 450 IKKMVEKGVLPNVETYNTLID---GYGRSCLFDRCFQILEEMEK---KGLKPNVISYGCL 503

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            N    D +    E +L + ++         +   PN++IY  L+ G    G++ D  R 
Sbjct: 504 INCLCKDANILEAEVILGDMVH---------RGVVPNAQIYNMLIDGSCIAGKLKDAFRF 554

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +E     P  VTY  +++ L K G +  A  + +E+TR G+  + ITYN L+ G
Sbjct: 555 FDEMVARE---IVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISG 611

Query: 296 YCQQLQIDKAKELLREMADDA---------------------------------KIEPDV 322
           Y     + KA EL   M                                      + PD 
Sbjct: 612 YSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDR 671

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL-MKAFALSSQPKLANKVFD 381
           V YN LI  ++   D   A +  + M A+GI P K++Y  L +  F      K+ N V D
Sbjct: 672 VIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVND 731

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
             +R    K +   +++L+ G+C++   + A      M ENGF P+V+   +L  G+   
Sbjct: 732 MKIRGLIPKTE--TYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREE 789

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSD 470
            +  +A ++  E+  +    K+   AD D
Sbjct: 790 GRSHDADVICSEMNMK---GKDDCRADED 815



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 115/250 (46%), Gaps = 16/250 (6%)

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV-TYTTVVSALVKAGSMDRARQVLAE-- 276
           ++  + +GR     R++ +M   +   S P H+ T  ++ S  +K    D    + +E  
Sbjct: 67  LQTLLQQGRTETARRLIRSMLLPKSPFSSPSHLYTLFSLSSTPMKPLFSDMLLSICSESK 126

Query: 277 -----------MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
                      M + GV  +  + N+ L+      + +   +L  E+ +   + PD   Y
Sbjct: 127 MVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESG-LRPDQFMY 185

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
              I   + + D   A+     M+  G++P    Y  ++       + K A K+FDEML 
Sbjct: 186 GKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEML- 244

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D RV  + + +N L++GYC++G +EEA  I ERMK     P + T+ SL NG+  A+   
Sbjct: 245 DRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMME 304

Query: 446 EALLLWKEIK 455
           EA  + +E++
Sbjct: 305 EAQRVLEEME 314



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 142/356 (39%), Gaps = 68/356 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V ++  +++ L    +    E V L D+V + V             P+   
Sbjct: 488 MEKKGLKPNVISYGCLINCLCKDANILEAE-VILGDMVHRGVV------------PNAQI 534

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     GK K   + FD+M      P ++TYN++I    +  +      +   I 
Sbjct: 535 YNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEIT 594

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G++  + T+ SL++ Y   G+++ A                                 
Sbjct: 595 RKGLSFDVITYNSLISGYSSAGNVQKAL-------------------------------- 622

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E++E +  + I P+                Y  L+ G   EG V   V  +    
Sbjct: 623 -----ELYETMKKSGIKPTLNT-------------YHRLIAGCGKEGLV--LVEKIYQEM 662

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            Q +    PD V Y  ++   V+ G + +A  + + M   G+  +++TYN L+ G+ ++ 
Sbjct: 663 LQMNLV--PDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEG 720

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           ++ K K L+ +M     I P   +Y+ILI G   + D  GA  ++ EM   G  P+
Sbjct: 721 RMHKVKNLVNDMKIRGLI-PKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPS 775


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 206/455 (45%), Gaps = 51/455 (11%)

Query: 31  SVKLFDVVVK---RVRKFSDP-DIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQ-L 80
           S  +FD+VVK   RV   +    IV+ +K     P   +YNA+L+A     +  K  + +
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGI 190

Query: 81  FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140
           F +M E G  P+V TYN++I+    A    + +F    +   G    + T+ +++ AY  
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCK 250

Query: 141 FGDLEIAETIVQAM--------------------REGR-RDVCKIIRELDLEDYSSENEG 179
              +  A  +++ M                    REG+ ++  +I+ E+    Y      
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP---- 306

Query: 180 DDDDDDEVFEKLLPNSINPSS-------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               D   F  L+    N  +          ++    +PN   YTTL+      G ++  
Sbjct: 307 ----DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRA 362

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +  L  MR   D   HP+  TYTT++    + G + +A Q++ EM   G     ITYN L
Sbjct: 363 MEFLDQMR---DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+C   +++ A  LL+EM +   I PDVVSY+ +I GF    +   A     EM A+G
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFI-PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I+P   +Y++L++      +      +F EML    +  D V +  L+  YC  G +++A
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEML-SLGLPPDEVTYTSLINAYCIEGDLDKA 537

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            R+ + M + GF P++ TY  L NG +   +  EA
Sbjct: 538 LRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEA 572



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/470 (23%), Positives = 219/470 (46%), Gaps = 50/470 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G LP+V  ++T++         G  E+ KL  ++     K  +P+++S        
Sbjct: 229 MERNGCLPNVVTYNTIIDAYCKLRKIG--EAFKLLRLMA---LKGLNPNLIS-------- 275

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N     G+ K+  ++ ++M +    PD +T+N +I         H  + +   ++
Sbjct: 276 YNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMV 335

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEG 179
           + G++  + T+ +L+ +    G+L  A   +  MR+ G     +    L ++ +S +  G
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTL-IDGFSQQ--G 392

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                 ++ ++++ N              F P    Y  L+ G+   GR+ D     G +
Sbjct: 393 FLKQAYQIMKEMVENG-------------FTPTIITYNALINGHCILGRMEDAS---GLL 436

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +   +    PD V+Y+T++S   +   +++A Q+  EM   G+  +  TY+ L++G C+Q
Sbjct: 437 QEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQ 496

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +  +L +EM     + PD V+Y  LI+ + +  D   AL   +EM  +G +P  ++
Sbjct: 497 RRLGEVCDLFQEMLS-LGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVT 555

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE---------------GYC 404
           Y  L+  F   S+ K A ++  ++L +  V  +I  +N L++               G+C
Sbjct: 556 YNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEI-TYNTLIDNCNNLEFKSALALMKGFC 614

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             GL+ EA R++E M + G+  N   Y  + +G S      +A  L+KE+
Sbjct: 615 MKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM 664



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 179/383 (46%), Gaps = 40/383 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  ++N+    G   + ++  DQM + G  P+  TY  +I   ++         +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++ ++E G T  + T+ +L+  +   G +E A  ++Q M E  R         D+  YS+
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE--RGFIP-----DVVSYST 453

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   + +   EK     +       ++ K  +P+   Y++L++G   + R+ +   +
Sbjct: 454 IISGFCRNQE--LEKAFQLKV------EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M         PD VTYT++++A    G +D+A ++  EM + G   + +TYN+L+ G
Sbjct: 506 FQEMLSL---GLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           + +Q +  +AK LL ++  +  + P+ ++YN LID               N +  +    
Sbjct: 563 FNKQSRTKEAKRLLLKLLYEESV-PNEITYNTLIDN-------------CNNLEFK---- 604

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              S   LMK F +      A++V + ML+    K++   +N+++ G+ ++G +E+A  +
Sbjct: 605 ---SALALMKGFCMKGLMNEADRVLESMLQKG-YKLNEEVYNVIIHGHSKVGNIEKAYNL 660

Query: 416 IERMKENGFYPNVATYGSLANGI 438
            + M  +GF P+  T  +LA  +
Sbjct: 661 YKEMLHSGFAPHSVTIMALAKSL 683



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 124/269 (46%), Gaps = 19/269 (7%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKELLRE 311
            +  VV +  +   +++A  ++      G     ++YN +L    +  Q +  A+ + +E
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M +   + P+V +YNILI GF    +    L FF EM   G  P  ++Y T++ A+    
Sbjct: 194 MVESG-VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLR 252

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +   A K+   ++    +  +++++N+++ G CR G ++E   I+E M +  + P+  T+
Sbjct: 253 KIGEAFKLL-RLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTF 311

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            +L NG        +AL+L  E+              + L P +     L++++     +
Sbjct: 312 NTLINGYCNVGNFHQALVLHAEM------------VKNGLSPNVVTYTTLINSMC----K 355

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           A    +A+E +  M + G+ PN   Y  +
Sbjct: 356 AGNLNRAMEFLDQMRDRGLHPNGRTYTTL 384



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 19/224 (8%)

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG-ALTFFNEMRARGIAPTKISY 360
           I+KA  ++  +A      P V+SYN ++D  I    S   A   F EM   G++P   +Y
Sbjct: 148 INKALSIVN-LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTY 206

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L++ F  +   ++    F EM R+  +  ++V +N +++ YC++  + EA +++  M 
Sbjct: 207 NILIRGFCTAGNLEMGLFFFGEMERNGCLP-NVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  PN+ +Y  + NG+    +  E   + +E+ +R  V                PD  
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV----------------PDRV 309

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
             + L +       F +AL + A M ++G+ PN   Y  +   M
Sbjct: 310 TFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSM 353


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/522 (24%), Positives = 233/522 (44%), Gaps = 80/522 (15%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS---------K 55
           G     K +STVVS        G   +V   +V++  + + +  D               
Sbjct: 96  GSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIH 155

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  + +NA++N   N GK K+ ++LF++M   G +P+V++YN +I    +     + V V
Sbjct: 156 PTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDV 215

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            +++ + G    + T+ +++ +                       +CK            
Sbjct: 216 FKKMEQNGCKPDVVTYNTIIDS-----------------------LCK------------ 240

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                        ++L+ +++   SE  +L +   PN   Y  ++ G+   G++++  R+
Sbjct: 241 -------------DRLVNDAMEFLSE--MLDRGIPPNVFTYNCMVHGFCILGQLNEATRL 285

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  ++     PD VT T +V  L K G +  AR V   MT  GV  N  TYN L+ G
Sbjct: 286 FKEMVGRD---VMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDG 342

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC Q  +++AK++   M       P V SYNILI+GF        A +   EM  + + P
Sbjct: 343 YCLQRLMNEAKKVFEIMIRQG-CAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNP 401

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y+TLM+      +PK A  +F EM     +  ++V +++L++G+C+ G ++EA ++
Sbjct: 402 DTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLP-NLVTYSILLDGFCKHGHLDEALKL 460

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           ++ M+E    PN+  +  L  G+ +A K    L + KE+  +       + AD  + P +
Sbjct: 461 LKSMQEKKLEPNIVHHTILIEGMFIAGK----LEVAKELFSK-------LFADG-IRPTI 508

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           +    ++  L    ++     +A ++   ME+ G  PN   Y
Sbjct: 509 RTYTVMIKGL----LKEGLSDEAYDLFRKMEDDGFLPNSCSY 546



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 213/456 (46%), Gaps = 37/456 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M + G  P    ++ +++ L    ++G + E+V+LF+ +V+R             +P+  
Sbjct: 149 MFKLGIHPTASTFNALINGLC---NEGKIKEAVELFNEMVRR-----------GHEPNVI 194

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER 118
           +YN ++N     G     + +F +M + G KPDV+TYN +I  LC        + F L  
Sbjct: 195 SYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEF-LSE 253

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +L+ GI   + T+  +V  +   G L  A  + + M    RDV      L +       E
Sbjct: 254 MLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVG--RDVMPDTVTLTILVDGLCKE 311

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   +   VFE              +  K   PN   Y  LM GY  +  +++  ++   
Sbjct: 312 GMVSEARLVFE-------------TMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEI 358

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M RQ      P   +Y  +++   K+  MD A+ +LAEM    +  + +TY+ L++G CQ
Sbjct: 359 MIRQ---GCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 415

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             +  +A  + +EM     + P++V+Y+IL+DGF        AL     M+ + + P  +
Sbjct: 416 FGRPKEALNIFKEMCSYGLL-PNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIV 474

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            +T L++   ++ + ++A ++F ++  D  ++  I  + ++++G  + GL +EA  +  +
Sbjct: 475 HHTILIEGMFIAGKLEVAKELFSKLFADG-IRPTIRTYTVMIKGLLKEGLSDEAYDLFRK 533

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           M+++GF PN  +Y  +  G    +    A+ L  E+
Sbjct: 534 MEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 569



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 114/272 (41%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P    +   + +  K         +  +M   GV  N  + N+L+   C+   +D A  +
Sbjct: 86  PSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSI 145

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L +M     I P   ++N LI+G         A+  FNEM  RG  P  ISY T++    
Sbjct: 146 LGKMFK-LGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLC 204

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +    +A  VF +M ++   K D+V +N +++  C+  LV +A   +  M + G  PNV
Sbjct: 205 KTGNTSMAVDVFKKMEQNG-CKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNV 263

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY  + +G  +  +  EA  L+KE+  R                 + PD   L  L D 
Sbjct: 264 FTYNCMVHGFCILGQLNEATRLFKEMVGR----------------DVMPDTVTLTILVDG 307

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +A  +   M E G+ PN + Y  +
Sbjct: 308 LCKEGMVSEARLVFETMTEKGVEPNISTYNAL 339



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 177/411 (43%), Gaps = 56/411 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS-----DS- 54
           M+R G+ P+V +++T+++ L  +G+          DV  K  +    PD+V+     DS 
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMA-----VDVFKKMEQNGCKPDVVTYNTIIDSL 238

Query: 55  ---------------------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
                                 P+   YN +++    LG+  +  +LF +M      PD 
Sbjct: 239 CKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDT 298

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           +T  +++    +         V E + E G+   ++T+ +L+  Y     +  A+ + + 
Sbjct: 299 VTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEI 358

Query: 154 M-REGR-----------RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
           M R+G               CK  R  + +   +E      + D V    L   +     
Sbjct: 359 MIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGR 418

Query: 202 PPLLPKTFA--------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
           P      F         PN   Y+ L+ G+   G + + +++L +M+ ++     P+ V 
Sbjct: 419 PKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK---LEPNIVH 475

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           +T ++  +  AG ++ A+++ +++   G+     TY +++KG  ++   D+A +L R+M 
Sbjct: 476 HTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKME 535

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           DD  + P+  SYN++I GF+   DS+ A+   +EM  +  +    ++  L+
Sbjct: 536 DDGFL-PNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLL 585


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 170/352 (48%), Gaps = 44/352 (12%)

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           SS N  D DD + VF  ++ N +             +PN   Y  +++G +++G   D  
Sbjct: 181 SSSNHRDYDDAERVFRDMVRNGV-------------SPNVYTYNVIIRGVVSQG---DLE 224

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           + LG MR+ E     P+ VTY T++ A  K   +  A  +L  M   GV AN I+YN ++
Sbjct: 225 KGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVI 284

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C + ++ +  EL+ EM     + PD V+YN L++GF    +    L   +EM  +G+
Sbjct: 285 NGLCGKGRMSEVGELVEEMRGKGLV-PDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGL 343

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           +P  ++YTTL+     +     A ++FD+M R   ++ +   +  L++G+C+ GL+ EA 
Sbjct: 344 SPNVVTYTTLINCMCKAGNLSRAVEIFDQM-RVRGLRPNERTYTTLIDGFCQKGLMNEAY 402

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           +++  M  +GF P+V TY +L +G     +  EA+ + + + ER             LPP
Sbjct: 403 KVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVER------------GLPP 450

Query: 474 PLKPDEELLDALADICVRAAFFR-----KALEIVACMEEHGIPPNKTKYKKI 520
                    D ++   V A F R     KA ++   M E G+ P+   Y  +
Sbjct: 451 ---------DVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSL 493



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 175/392 (44%), Gaps = 36/392 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN ++    + G  +K L    +M + G  P+V+TYN +I    +  +    + +
Sbjct: 205 PNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMAL 264

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +   G+   + ++ S++    G G +     +V+ MR                    
Sbjct: 265 LRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMR-------------------- 304

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLMKGYMNEG 227
              G     DEV    L N                 ++ K  +PN   YTTL+      G
Sbjct: 305 ---GKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAG 361

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            +S  V +   MR +      P+  TYTT++    + G M+ A +VL+EM   G   + +
Sbjct: 362 NLSRAVEIFDQMRVR---GLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVV 418

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYN L+ GYC   ++ +A  +LR M +   + PDVVSY+ +I GF    +   A     E
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERG-LPPDVVSYSTVIAGFCRERELGKAFQMKEE 477

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +G+ P  ++Y++L++   L  +   A  +F EM+R   +  D V +  L+  YC  G
Sbjct: 478 MVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRG-LPPDEVTYTSLINAYCVDG 536

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            + +A R+ + M + GF P+  TY  L NG++
Sbjct: 537 ELSKALRLHDEMVQRGFLPDNVTYSVLINGLN 568



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 219/493 (44%), Gaps = 57/493 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVV--------- 38
           M+R+G  P+V  ++ ++  + + GD             +G   +V  ++ +         
Sbjct: 198 MVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKK 257

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           VK          V     +  +YN+V+N     G+  +  +L ++M   G  PD +TYN 
Sbjct: 258 VKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNT 317

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           ++    +    H  + +L  ++  G++  + T+ +L+      G+L  A  I   MR   
Sbjct: 318 LVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMR--- 374

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                 +R L      +E       D    + L+  +    SE  ++   F+P+   Y  
Sbjct: 375 ------VRGLR----PNERTYTTLIDGFCQKGLMNEAYKVLSE--MIVSGFSPSVVTYNA 422

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ GY   GRV + V   G +R   +    PD V+Y+TV++   +   + +A Q+  EM 
Sbjct: 423 LVHGYCFLGRVQEAV---GILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMV 479

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             GV  + +TY+ L++G C Q ++ +A +L REM     + PD V+Y  LI+ + +  + 
Sbjct: 480 EKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRG-LPPDEVTYTSLINAYCVDGEL 538

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
           + AL   +EM  RG  P  ++Y+ L+      ++ K+A ++  ++  +  V  D V +N 
Sbjct: 539 SKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVP-DDVTYNT 597

Query: 399 LVE---------------GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           L+E               G+C  GL+ EA R+ + M +    PN A Y  + +G S    
Sbjct: 598 LIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGN 657

Query: 444 PGEALLLWKEIKE 456
             +A  L+ E++ 
Sbjct: 658 VHKAYNLYMELEH 670



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/448 (20%), Positives = 194/448 (43%), Gaps = 48/448 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+V  ++T+++ +  +G+     +V++FD +  RVR           +P+   
Sbjct: 338 MVGKGLSPNVVTYTTLINCMCKAGNLS--RAVEIFDQM--RVRGL---------RPNERT 384

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++     G   +  ++  +M   G  P V+TYN ++       R    V +L  ++
Sbjct: 385 YTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMV 444

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+   + ++ +++A +    +L  A  + + M E  + V       D   YSS  +G 
Sbjct: 445 ERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVE--KGVLP-----DTVTYSSLIQG- 496

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                   ++ L  + +   E  ++ +   P+   YT+L+  Y  +G +S  +R+   M 
Sbjct: 497 -----LCLQQKLVEAFDLFRE--MMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMV 549

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL------- 293
           ++      PD+VTY+ +++ L K      A+++L ++       + +TYN L+       
Sbjct: 550 QR---GFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNE 606

Query: 294 --------KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
                   KG+C +  +++A  + + M      +P+   YN++I G     +   A   +
Sbjct: 607 FKSVEGLVKGFCMKGLMNEADRVFKTMLQRNH-KPNAAIYNLMIHGHSRGGNVHKAYNLY 665

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            E+     A   ++   L+KA A        +++   +LR  R+  D     +LVE   +
Sbjct: 666 MELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLN-DAKVAKVLVEVNFK 724

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGS 433
            G ++    ++  M ++G  P+   + S
Sbjct: 725 EGNMDAVLNVLTEMAKDGLLPDGGIHSS 752



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 25/204 (12%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL-----ANKVFDEMLRDPRVKVDIVA 395
           ALT  +     G APT +SY  ++ A    S         A +VF +M+R+  V  ++  
Sbjct: 151 ALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNG-VSPNVYT 209

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE-- 453
           +N+++ G    G +E+    + +M++ G  PNV TY +L +     +K  EA+ L +   
Sbjct: 210 YNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMA 269

Query: 454 --------------IKERC---EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
                         I   C    + + G   +      L PDE   + L +   +     
Sbjct: 270 VGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLH 329

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
           + L +++ M   G+ PN   Y  +
Sbjct: 330 QGLVLLSEMVGKGLSPNVVTYTTL 353


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 136/551 (24%), Positives = 239/551 (43%), Gaps = 87/551 (15%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVS------DSKPDTAAYNAVLNACANLGKP 74
           AA G   PV+ V  ++ +V    ++   D            PD   Y  ++    + G+ 
Sbjct: 101 AAEGSGSPVD-VFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRV 159

Query: 75  KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134
              L L D M   G +P+V+TY V+++   R S     + VL+ +   G T  + T+  +
Sbjct: 160 ADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVI 219

Query: 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-----------DLEDYSSENEGDD-- 181
           +                   REGR D     REL           D   Y++  +G    
Sbjct: 220 INGMC---------------REGRVD---DARELLNRLPSYGFQPDTVSYTTLLKGLCAS 261

Query: 182 ---DDDDEVFEKLLPNSINPSSEP-PLLPKTF---------------------APNSRIY 216
              DD +E+F +++  +  P+     +L + F                     A N+ + 
Sbjct: 262 KRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLC 321

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++     +GRV D  ++L  M        +PD ++YTTV+  L +A   D A+++L E
Sbjct: 322 NIVINSICKQGRVDDAFKLLNDMGSY---GCNPDTISYTTVLKGLCRAERWDDAKELLNE 378

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R   P N +T+N  +   CQ+  I++A  L+ +M++       VV+YN L++GF +  
Sbjct: 379 MVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHG-CTVGVVTYNALVNGFCVQG 437

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               AL  F  M  +   P  I+YTTL+     + +   A ++  EMLR      ++V +
Sbjct: 438 HIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELVAEMLRG-DCPPNVVTF 493

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N+LV  +C+ G +EEA  ++E+M E+G  PN+ TY +L +GI+      +AL L   +  
Sbjct: 494 NVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVS 553

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           +      GV+          PD     ++  I  +     +A+++   +++ G+ P    
Sbjct: 554 K------GVS----------PDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVV 597

Query: 517 YKKIYVEMHSR 527
           Y KI + +  R
Sbjct: 598 YNKILLGLCKR 608



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 29/287 (10%)

Query: 235 MLGAMRRQEDNAS----HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + GA+R  E + S     PD    T ++  L + G    A +VL      G P +   YN
Sbjct: 56  LAGAVRLVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYN 115

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS--AGALTFFNEM 348
            L+ GYC+   +D A+ L+  M     + PD  +Y  LI   +L D    A AL+  ++M
Sbjct: 116 TLVAGYCRYGHLDAARRLIGSM----PVAPDAYTYTPLIR--VLCDRGRVADALSLLDDM 169

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RG  P  ++YT L++A   +S  + A  V DEM R      +IV +N+++ G CR G 
Sbjct: 170 LRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEM-RAKGCTPNIVTYNVIINGMCREGR 228

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           V++A+ ++ R+   GF P+  +Y +L  G+  +++  +   L+ E+ E+           
Sbjct: 229 VDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK----------- 277

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                   P+E   D L     R     +A++++  M EHG   N T
Sbjct: 278 -----NCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTT 319



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 108/517 (20%), Positives = 216/517 (41%), Gaps = 119/517 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P+V  ++ ++   A   + G  +++ + D   +   K   P+IV+        
Sbjct: 169 MLRRGCQPNVVTYTVLLE--AMCRNSGFEQAMAVLD---EMRAKGCTPNIVT-------- 215

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN ++N     G+     +L +++  +G +PD ++Y  ++K LCA          V E  
Sbjct: 216 YNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDD----VEELF 271

Query: 120 LEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKI 164
            EM    CM    TF  L+  +   G +E A  +++ M E                +CK 
Sbjct: 272 AEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQ 331

Query: 165 IRELD----LEDYSSENEGDD-----------------DDDDEVFEKLLPNSINPS---- 199
            R  D    L D  S     D                 DD  E+  +++ N+  P+    
Sbjct: 332 GRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTF 391

Query: 200 -------SEPPLLPKTFAPNSRI-----------YTTLMKGYMNEGRVSDTVRMLGAMRR 241
                   +  L+ +      ++           Y  L+ G+  +G +   + +  +M  
Sbjct: 392 NTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM-- 449

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                  P+ +TYTT+++ L  A  +D A +++AEM R   P N +T+N+L+  +CQ+  
Sbjct: 450 ----PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGF 505

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +++A EL+ +M +     P++++YN L+DG      S  AL   + + ++G++P  I+++
Sbjct: 506 LEEAIELVEQMMEHG-CTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFS 564

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN------------------------ 397
           +++   +   + + A ++F  +++D  ++   V +N                        
Sbjct: 565 SIIGILSKEDRIEEAVQLF-HVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVS 623

Query: 398 -----------MLVEGYCRMGLVEEAKRIIERMKENG 423
                      +L+EG    GL++EA+ ++  +   G
Sbjct: 624 NGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRG 660


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/521 (23%), Positives = 225/521 (43%), Gaps = 86/521 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ GY P++   S+++        +G   S ++ + V        D   V+  +P+T  
Sbjct: 142 MMKLGYEPNIVTLSSLL--------NGYCHSKRISEAVA-----LVDQMFVTGYQPNTVT 188

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           +N +++      K  + + L D+M   G +PD++TY V++  LC R              
Sbjct: 189 FNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKR-------------- 234

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
                                 GD ++A  ++  M +G+ +   +I    ++        
Sbjct: 235 ----------------------GDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHM 272

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           DD             ++N   E  +  K   PN   Y++L+    N GR SD  R+L  M
Sbjct: 273 DD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             ++ N   PD  T++ ++ A VK G +  A ++  EM +  +  + +TY+ L+ G+C  
Sbjct: 318 IERKIN---PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++D+AK++   M       PDVVSY+ LI GF         +  F EM  RG+    ++
Sbjct: 375 DRLDEAKQMFEFMVSKHCF-PDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YTTL++    +    +A ++F EM+ D  V  +I+ +N L++G C+ G +E+A  + E +
Sbjct: 434 YTTLIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           + +   P + TY  +  G+  A K  +   L+      C +  +GV          KPD 
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF------CNLSLKGV----------KPDV 536

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              + +     R     +A  +   M+E G  PN   Y  +
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTL 577



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 202/467 (43%), Gaps = 60/467 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFD---------------VVVKRVRKF 45
           M  +GY P+   ++T++  L     +   E+V L D               VVV  + K 
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLH--NKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKR 234

Query: 46  SDPDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
            D D+             +P    Y  +++           L LF +M   G +P+V+TY
Sbjct: 235 GDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           + +I       R      +L  ++E  I   + TF +L+ A+V  G L  AE +   M  
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-- 352

Query: 157 GRRDVCKIIRELD--LEDYSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
                  + R +D  +  YSS   G       D+  ++FE              ++ K  
Sbjct: 353 -------VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE-------------FMVSKHC 392

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   Y+TL+KG+    RV + + +    R         + VTYTT++  L +AG  D 
Sbjct: 393 FPDVVSYSTLIKGFCKAKRVDEGMELF---REMSQRGLVGNTVTYTTLIQGLFQAGDCDM 449

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A+++  EM   GVP N +TYN LL G C+  +++KA  ++ E    +K+EP + +YNI+I
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM-VVFEYLQRSKMEPTIYTYNIMI 508

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G             F  +  +G+ P  ++Y T++  F      + A+ +F EM  D  +
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +   +N L+    R G  E +  +I+ M+  GF  + +T G + N
Sbjct: 569 P-NSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 614



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 122/239 (51%), Gaps = 5/239 (2%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L +  ++E ++ D V + G M +       P  + ++ ++SA+ K    D    +  +M 
Sbjct: 52  LSRNGLSELKLDDAVALFGEMVKSR---PFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ 108

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
            +G+P N  TY+IL+  +C++ Q+  A  +L +M      EP++V+ + L++G+      
Sbjct: 109 NLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMM-KLGYEPNIVTLSSLLNGYCHSKRI 167

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
           + A+   ++M   G  P  +++ TL+    L ++   A  + D M+     + D+V + +
Sbjct: 168 SEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKG-CQPDLVTYGV 226

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +V G C+ G  + A  ++ +M++    P V  Y ++ +G+   +   +AL L+KE++ +
Sbjct: 227 VVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETK 285



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 27/245 (11%)

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
            +L++D A  L  EM   ++  P ++ ++ L+     ++     ++   +M+  G+    
Sbjct: 58  SELKLDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNH 116

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            +Y+ L+  F   SQ  LA  V  +M++   +P    +IV  + L+ GYC    + EA  
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISEAVA 172

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCE-------VKKEGV- 465
           ++++M   G+ PN  T+ +L +G+ L  K  EA+ L+ + + + C+       V   G+ 
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLC 232

Query: 466 -NADSDLP---------PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
              D+DL            L+P   +   + D   +      AL +   ME  GI PN  
Sbjct: 233 KRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVV 292

Query: 516 KYKKI 520
            Y  +
Sbjct: 293 TYSSL 297


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 204/434 (47%), Gaps = 33/434 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ GY P    ++T++  L   G     E+V L D +V+           +  +PD   
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVS--EAVVLVDRMVE-----------NGCQPDVVT 195

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++N     G     L L  +M E   K DV TY+ +I    R       + + + + 
Sbjct: 196 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME 255

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+ SLV      G       +++ M   R  V  +I    L D   + EG 
Sbjct: 256 TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM-VSREIVPNVITFNVLLDVFVK-EGK 313

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +E++++++   I             +PN   Y TLM GY  + R+S+   ML  M 
Sbjct: 314 LQEANELYKEMITRGI-------------SPNIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N   PD VT+T+++        +D   +V   +++ G+ AN +TY+IL++G+CQ  
Sbjct: 361 R---NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I  A+EL +EM     + PDV++Y IL+DG         AL  F +++   +    + Y
Sbjct: 418 KIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TT+++      + + A  +F   L    VK +++ + +++ G C+ G + EA  ++ +M+
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCS-LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535

Query: 421 ENGFYPNVATYGSL 434
           E+G  PN  TY +L
Sbjct: 536 EDGNAPNDCTYNTL 549



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 124/532 (23%), Positives = 234/532 (43%), Gaps = 60/532 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RS  LP +  +S   S +A +         K F++V+   ++     I  +       
Sbjct: 79  MIRSRPLPSLVDFSRFFSAIART---------KQFNLVLDFCKQLELNGIAHN----IYT 125

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++N      K      +  ++ + G +PD  T+N +IK      +    V +++R++
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
           E G    + T+ S+V      GD  +A  +++ M E  R+V     + D+  YS+     
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE--RNV-----KADVFTYSTIIDSL 238

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G  D    +F+++    I  S                Y +L++G    G+ +D   +
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVT-------------YNSLVRGLCKAGKWNDGALL 285

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  +E     P+ +T+  ++   VK G +  A ++  EM   G+  N ITYN L+ G
Sbjct: 286 LKDMVSRE---IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 342

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC Q ++ +A  +L  M  + K  PD+V++  LI G+ ++      +  F  +  RG+  
Sbjct: 343 YCMQNRLSEANNMLDLMVRN-KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVA 401

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y+ L++ F  S + KLA ++F EM+    V  D++ + +L++G C  G +E+A  I
Sbjct: 402 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALEI 460

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            E ++++     +  Y ++  G+    K  +A  L+      C +  +GV          
Sbjct: 461 FEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF------CSLPCKGV---------- 504

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           KP+      +     +     +A  ++  MEE G  PN   Y  + +  H R
Sbjct: 505 KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL-IRAHLR 555


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 229/542 (42%), Gaps = 102/542 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RASRKHLL 112
           P+   +N+++N      +  +  +LFD M E G   DV+TYN+++K LC   R    +  
Sbjct: 308 PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRH 367

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDL 170
           V ++ R    G +  + TF +L+      G +  A  + + M   EG     +      L
Sbjct: 368 VELMRRT--EGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPN-RFTYAFLL 424

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSRIYTTLMKG 222
           E       GD    ++ FE++L      SS  P        L+ +   P    Y TL+ G
Sbjct: 425 EGLC--KAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTG 482

Query: 223 YMNEGRVSDTVRMLGAM--------------------------------RRQEDNASHPD 250
               G V D + +L  M                                +R  +    P+
Sbjct: 483 LSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 542

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY+T++  L K   MD A Q+LA+M  +G  AN +TY+ ++ G  +  +++ A  +LR
Sbjct: 543 VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLR 602

Query: 311 EMADDAKIEPDVVSYNILIDGFI---LIDDSAG--------------------------- 340
           +M  DA   PD V+YN LIDGF     + ++ G                           
Sbjct: 603 QM-RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRS 661

Query: 341 -----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+   + M ARG AP  I+Y++++     + +   A   F++M RD  V   ++A
Sbjct: 662 GRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIA 721

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++G C+ G ++EA   +ERM   G  P+V T+  L NG+  A +    L L+    
Sbjct: 722 YSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELF---- 777

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
             C + + G  AD      +     +++A    C++   F  A  ++  M+ HGI  N  
Sbjct: 778 --CGMAERGCKAD------IYAYNAMINAY---CLKGE-FSAAYALLEEMKTHGIAKNTV 825

Query: 516 KY 517
            +
Sbjct: 826 TH 827



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 134/600 (22%), Positives = 247/600 (41%), Gaps = 82/600 (13%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDT 58
            M+ SG  P V  +++V+        DG  +  ++ D   V KR  +          +P+ 
Sbjct: 499  MIESGLSPDVITFNSVL--------DGLCKEQRILDAHNVFKRALE-------RGCRPNV 543

Query: 59   AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
              Y+ +++  + + K  + LQL  +M E G + + +TY+ ++    +  R    V VL +
Sbjct: 544  VTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 603

Query: 119  ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-------DLE 171
            + + G      T+ +L+  +                R+  R+   ++RE+        + 
Sbjct: 604  MRDAGCLPDAVTYNTLIDGFF--------------KRQRLREAVGLLREMLEAGFHPSVV 649

Query: 172  DYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
             Y++   G       DE  E L            +  +  APN+  Y++++ G    GRV
Sbjct: 650  TYTTLCHGLCRSGRFDEAVEIL----------DYMAARGCAPNAITYSSIVDGLCKAGRV 699

Query: 230  SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            ++ +     M R E  A H   + Y+ ++  L KAG +D A + L  M R G   + +T+
Sbjct: 700  TEALGYFEKMARDEVVAPHV--IAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTF 757

Query: 290  NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
            +IL+ G C   +ID   EL   MA+    + D+ +YN +I+ + L  + + A     EM+
Sbjct: 758  SILINGLCDAGRIDTGLELFCGMAERG-CKADIYAYNAMINAYCLKGEFSAAYALLEEMK 816

Query: 350  ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              GIA   +++  ++KA   + +   A   F  +  D R   D +++N L+         
Sbjct: 817  THGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCR---DEISYNTLITSLVASRRS 873

Query: 410  EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE--------VK 461
            E+A  ++  M  +G  P+   Y ++ +G+  A  P  A  L +E++ R          + 
Sbjct: 874  EQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIM 933

Query: 462  KEGVNADSDLP-----------PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
              G++    LP             LKPD  +  +L D   +A     A ++   +   GI
Sbjct: 934  ISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKL---LRSSGI 990

Query: 511  PPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLD 570
             P  T Y  +   +     T K     R+    + K        W  L  +Y  +E R+D
Sbjct: 991  EPTITMYSTMVDSLCKNRGTDKALEVIRE---MKSKNCEPGIHIWTSLATAYV-AEGRVD 1046



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 116/516 (22%), Positives = 211/516 (40%), Gaps = 91/516 (17%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P +  ++T+V+ L+ SG             +V+      +  I S   PD   +N+VL+ 
Sbjct: 471 PTLVTYNTLVTGLSKSG-------------MVRDALGLLEFMIESGLSPDVITFNSVLDG 517

Query: 68  CANLGKPKKFL---QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
              L K ++ L    +F +  E G +P+V+TY+ +I   ++ ++    + +L +++E+G 
Sbjct: 518 ---LCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGC 574

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+ ++V   +  G +E A  +++ MR+                            
Sbjct: 575 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDA--------------------------- 607

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                  LP+++                   Y TL+ G+    R+ + V   G +R   +
Sbjct: 608 -----GCLPDAVT------------------YNTLIDGFFKRQRLREAV---GLLREMLE 641

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
              HP  VTYTT+   L ++G  D A ++L  M   G   N ITY+ ++ G C+  ++ +
Sbjct: 642 AGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTE 701

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A     +MA D  + P V++Y+ LIDG         A  F   M   G  P  ++++ L+
Sbjct: 702 ALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILI 761

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                + +     ++F  M  +   K DI A+N ++  YC  G    A  ++E MK +G 
Sbjct: 762 NGLCDAGRIDTGLELFCGM-AERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGI 820

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
             N  T+G +   +    +  EA+  +  I E C                   DE   + 
Sbjct: 821 AKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCR------------------DEISYNT 862

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L    V +    +ALE++  M   G  P+   Y  +
Sbjct: 863 LITSLVASRRSEQALELLRAMVADGGSPDACNYMTV 898



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 129/594 (21%), Positives = 239/594 (40%), Gaps = 112/594 (18%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           ++ G+ P V  +STV+  L    D+   +  KL + +  R              P+   Y
Sbjct: 28  IQFGFRPTVVTYSTVIDGLCR--DNEVDKGCKLLEEMAGR-----------GCAPNAVTY 74

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRK----------- 109
           N ++NA    G+ K+   L ++M   G  P+++T+ ++IK LC     +           
Sbjct: 75  NTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVD 134

Query: 110 --------------HLLV---------FVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
                         H L          F  +++L +G T    T+ ++V      G LE 
Sbjct: 135 RGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEA 194

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP---- 202
           A  ++Q + E           + ++  S    G+     E F+ +    ++P++      
Sbjct: 195 AGMVLQLLAESFSSPTVFTFTIAVDGLS--KAGNLTGAYEFFDSMPQTGVSPNTVTYDAL 252

Query: 203 ---------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
                           L  K        +++L+ G     R+ + +++L AM        
Sbjct: 253 IDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM------PC 306

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P+ V + ++++ L +A  +D A ++   M   G  A+ ITYNILLKG C+  +I +A  
Sbjct: 307 VPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYR 366

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA-RGIAPTKISYTTLMKA 366
            +  M       P+VV+++ LI G         A   +  M A  GI+P + +Y  L++ 
Sbjct: 367 HVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEG 426

Query: 367 FALSSQPKLANKVFDEML------------RDPRV--------KVDIVAWNMLVEGYCRM 406
              +   +   + F++ML              P V        +  +V +N LV G  + 
Sbjct: 427 LCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKS 486

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G+V +A  ++E M E+G  P+V T+ S+ +G+   ++  +A  ++K   ER         
Sbjct: 487 GMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER--------- 537

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 P +     L+D L+    + A   +AL+++A M E G   N   Y  +
Sbjct: 538 ---GCRPNVVTYSTLIDGLS----KMAKMDEALQLLAKMVELGCRANTVTYSTV 584



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 188/429 (43%), Gaps = 41/429 (9%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N     G+       F +  +FG +P V+TY+ +I    R +       +LE + 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G      T+ +LV A +G G  + A ++++ M         I   L ++      EG+
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLC--KEGE 121

Query: 181 DDDDDEVFEKLLPNSINPSSE----------------------PPLLPKTFAPNSRIYTT 218
            +    V ++++     P  E                        +L   F P++  Y T
Sbjct: 122 IEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNT 181

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++ G    GR+     +L  +    ++ S P   T+T  V  L KAG++  A +    M 
Sbjct: 182 MVDGLYKAGRLEAAGMVLQLL---AESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMP 238

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           + GV  N +TY+ L+ G C+  ++D A  LLR    D   +  + +++ L+ G       
Sbjct: 239 QTGVSPNTVTYDALIDGLCKAGKLDIALGLLR----DKNSQAGMFAFSSLLHGLCQAHRL 294

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A+     ++A    P  + + +LM     + +   A ++FD M ++     D++ +N+
Sbjct: 295 EEAIQL---LKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVM-KESGCSADVITYNI 350

Query: 399 LVEGYCRMGLVEEAKRIIERMKEN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           L++G C++  + EA R +E M+   G  PNV T+ +L  G+  A +  +A   W E+ ER
Sbjct: 351 LLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQA---W-EVYER 406

Query: 458 CEVKKEGVN 466
             V  EG++
Sbjct: 407 -MVAVEGIS 414



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 121/269 (44%), Gaps = 18/269 (6%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VTY  +++ L KAG +  A     +  + G     +TY+ ++ G C+  ++DK  +LL E
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           MA      P+ V+YN L++  +    +  A +    M A G  P  I++  ++K      
Sbjct: 62  MAGRG-CAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           + + A +V DEM+ D     D+    +L+   C +G V+EA    +++   GF P+  TY
Sbjct: 121 EIEAAFRVVDEMV-DRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTY 179

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            ++ +G+  A +   A ++ + +            A+S   P +      +D L+    +
Sbjct: 180 NTMVDGLYKAGRLEAAGMVLQLL------------AESFSSPTVFTFTIAVDGLS----K 223

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           A     A E    M + G+ PN   Y  +
Sbjct: 224 AGNLTGAYEFFDSMPQTGVSPNTVTYDAL 252



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 184/446 (41%), Gaps = 54/446 (12%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            ML +G+ P V  ++T+   L  SG     E+V++ D +  R              P+   
Sbjct: 639  MLEAGFHPSVVTYTTLCHGLCRSGRFD--EAVEILDYMAAR-----------GCAPNAIT 685

Query: 61   YNAVLNACANLGKPKKFLQLFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y+++++     G+  + L  F++M  +    P V+ Y+ +I    +A R       LER+
Sbjct: 686  YSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERM 745

Query: 120  LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN-- 177
            +  G    + TF  L+      G ++    +   M E     CK     D+  Y++    
Sbjct: 746  IRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERG---CKA----DIYAYNAMINA 798

Query: 178  ---EGDDDDDDEVFEKLLPNSINPSS-EPPLLPKTFAPNSRI------------------ 215
               +G+      + E++  + I  ++    ++ K    N RI                  
Sbjct: 799  YCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEI 858

Query: 216  -YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
             Y TL+   +   R    + +L AM     +   PD   Y TV+  L KAGS + A ++L
Sbjct: 859  SYNTLITSLVASRRSEQALELLRAMVA---DGGSPDACNYMTVMDGLFKAGSPEVAAKLL 915

Query: 275  AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             EM   G   +  TY I++ G  +  Q+  A +   EM     ++PD + Y+ LID F  
Sbjct: 916  QEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRK-NLKPDAIVYSSLIDAFCK 974

Query: 335  IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
             D    A   +  +R+ GI PT   Y+T++ +   +     A +V  EM +    +  I 
Sbjct: 975  ADKVDDA---WKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREM-KSKNCEPGIH 1030

Query: 395  AWNMLVEGYCRMGLVEEAKRIIERMK 420
             W  L   Y   G V+EA +++  ++
Sbjct: 1031 IWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 23/202 (11%)

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           +V+YN+LI+G         A T F +    G  PT ++Y+T++      ++     K+ +
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           EM        + V +N LV      G  +EA  ++ERM  NG  P + T+G +  G+   
Sbjct: 61  EM-AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLC-- 117

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC-VRAA--FFRKA 498
            K GE    ++ + E           D    P ++    LL AL ++  V  A  FF++ 
Sbjct: 118 -KEGEIEAAFRVVDEM---------VDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQV 167

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
           L I       G  P+   Y  +
Sbjct: 168 LLI-------GFTPDAVTYNTM 182


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 221/459 (48%), Gaps = 38/459 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PDT  +N ++N     GK  K + L D+M E G +PD++TYN ++    R+    L   
Sbjct: 155 EPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFD 214

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIREL--DLE 171
           +L ++ E  +   + T+ +++ +    G ++ A ++ + M  +G +        L   L 
Sbjct: 215 MLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSIN---------------PSSE--PPLLPKTFAPNSR 214
                N+G     D V  +++PN I                 ++E    ++ +  +PN  
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y TLM GY  + R+S+   ML  M R   N   PD VT+T+++        +D   +V 
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVR---NKCSPDIVTFTSLIKGYCMVKRVDDGMKVF 391

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             +++ G+ AN +TY+IL++G+CQ  +I  A+EL +EM     + PDV++Y IL+DG   
Sbjct: 392 RNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCD 450

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 AL  F +++   +    + YTT+++      + + A  +F   L    VK +++
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCS-LPCKGVKPNVM 509

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + +++ G C+ G + EA  ++ +M+E+G  PN  TY +L   I    + G+     K I
Sbjct: 510 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL---IRAHLRDGDLTASAKLI 566

Query: 455 KERCEVKKEGVNADS-------DLPPPLKPDEELLDALA 486
           +   E+K  G +AD+       D+    + D+  LD L+
Sbjct: 567 E---EMKSCGFSADASSIKMVIDMLLSGELDKSFLDMLS 602



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 234/533 (43%), Gaps = 62/533 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RS  LP +  +S   S +A +         K F++V+   ++     I  +       
Sbjct: 79  MIRSRPLPGLVDFSRFFSAIART---------KQFNLVLDFCKQLELNGIAHN----IYT 125

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
            N ++N      K      +  ++ + G +PD  T+N +I  LC        +V V +R+
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLV-DRM 184

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS---- 175
           +E G    M T+ S+V      GD  +A  +++ M E  R+V     + D+  YS+    
Sbjct: 185 VENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEE--RNV-----KADVFTYSTIIDS 237

Query: 176 -ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G  D    +F+++    I  S                Y +L++G    G+ +D   
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVT-------------YNSLVRGLCKAGKWNDGAL 284

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  +E     P+ +T+  ++   VK G +  A ++  EM   G+  N ITYN L+ 
Sbjct: 285 LLKDMVSRE---IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMD 341

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC Q ++ +A  +L  M  + K  PD+V++  LI G+ ++      +  F  +  RG+ 
Sbjct: 342 GYCMQNRLSEANNMLDLMVRN-KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLV 400

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++Y+ L++ F  S + KLA ++F EM+    V  D++ + +L++G C  G +E+A  
Sbjct: 401 ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALE 459

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           I E ++++     +  Y ++  G+    K  +A  L+      C +  +GV         
Sbjct: 460 IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF------CSLPCKGV--------- 504

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
            KP+      +     +     +A  ++  MEE G  PN   Y  + +  H R
Sbjct: 505 -KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL-IRAHLR 555



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 19/181 (10%)

Query: 341 ALTFFNEM-RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
           A+  F EM R+R + P  + ++    A A + Q  L    F + L    +  +I   N++
Sbjct: 72  AIALFQEMIRSRPL-PGLVDFSRFFSAIARTKQFNLVLD-FCKQLELNGIAHNIYTLNIM 129

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           +  +CR      A  ++ ++ + G+ P+  T+ +L NG+ L  K  +A++L   + E   
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVEN-- 187

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                           +PD    +++ +   R+     A +++  MEE  +  +   Y  
Sbjct: 188 --------------GCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYST 233

Query: 520 I 520
           I
Sbjct: 234 I 234


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 204/474 (43%), Gaps = 49/474 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  AYNA+++           L+   +M+E    PDV TYN++I    +AS+      +
Sbjct: 224 PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEM 283

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCK---IIRELDL 170
           L  +++ G+T    TF S++      G  E A +++  M  R  R   C    +I  L  
Sbjct: 284 LHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGL-- 341

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                + +  D   D V E               +   F P+   Y+ L  G    GR+ 
Sbjct: 342 ----CKQQNVDRAKDLVDE--------------FVSSGFVPDVVTYSILADGLCKRGRID 383

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +   ++  M         P+ VTY T++  L KA   ++A ++L  +   G   + +TY 
Sbjct: 384 EAFELVKEM---SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYT 440

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           I++ G C++ ++DKA +++  M       P V++Y  L++G         A   F EM +
Sbjct: 441 IIVDGLCKEGRLDKALKMVEGMLKRG-CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS 499

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +      ++Y +L+  +  SS+ K A KV D +   P + V    +N L++GYC+ G ++
Sbjct: 500 KDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDV----YNALMDGYCKEGRLD 555

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           E   + E M   G  PN+ TY  + +G+    K  EA    + +     V          
Sbjct: 556 EIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCV---------- 605

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
                 PD    + + D   +A+  ++A +++  M + GIPP+   Y  +  + 
Sbjct: 606 ------PDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 653



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 179/405 (44%), Gaps = 34/405 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K  T   N  L      G   +   +F++M + G  PD  TY+++IK   + ++      
Sbjct: 122 KHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFT 181

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L++    G    ++ +  L  A+   G L              +D  +I R +   D  
Sbjct: 182 MLDKAKVRGFKPEVSVYTILTRAFCKTGRL--------------KDALEIFRNIPSPDAI 227

Query: 175 SEN-----EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           + N         +D D   E L            +  +  AP+   Y  L+ G     + 
Sbjct: 228 AYNAIIHGHCRKNDCDGALEFL----------KEMNERKVAPDVFTYNILIDGLCKASKT 277

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
                ML  M    D    PD VT+ +++  L KAG  +RA  +LA M       +  TY
Sbjct: 278 DKASEMLHEMV---DRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTY 334

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L+ G C+Q  +D+AK+L+ E      + PDVV+Y+IL DG         A     EM 
Sbjct: 335 NTLISGLCKQQNVDRAKDLVDEFVSSGFV-PDVVTYSILADGLCKRGRIDEAFELVKEMS 393

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            +G  P  ++Y TL+     +S+ + A ++ + ++    V  D+V + ++V+G C+ G +
Sbjct: 394 GKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVP-DVVTYTIIVDGLCKEGRL 452

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++A +++E M + G  P+V TY +L  G+    +  EA  ++KE+
Sbjct: 453 DKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 497



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 186/439 (42%), Gaps = 33/439 (7%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V R +   D  + S   PD   Y+ + +     G+  +  +L  +M   G  P+++TYN 
Sbjct: 347 VDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNT 406

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REG 157
           +I    +AS+      +LE ++  G    + T+  +V      G L+ A  +V+ M + G
Sbjct: 407 LIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRG 466

Query: 158 -----------RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
                         +C+  R  +      E    D   D +    L N    SS      
Sbjct: 467 CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQ 526

Query: 207 KTF-----APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH---PDHVTYTTVV 258
           K        P   +Y  LM GY  EGR+ +   +       ED A     P+  TY  V+
Sbjct: 527 KVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVF------EDMACRGCVPNIKTYNIVM 580

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
             L K G +D A   L  M   G   + ++YNI++ G  +  +  +A+++L +M   A I
Sbjct: 581 DGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQ-AGI 639

Query: 319 EPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
            PD V+YN L+  F      DD+ G L     M   G+ P  ++Y TL+   + +++   
Sbjct: 640 PPDAVTYNTLMAQFCKEERFDDAVGIL---KNMIKAGVDPDNVTYNTLISGLSQTNRLGD 696

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A ++  EMLR+  V      +N +++  C+ G +++A  +++ M  +G   N  TY    
Sbjct: 697 AYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFI 756

Query: 436 NGISLARKPGEALLLWKEI 454
           + +    +  EA  L  E+
Sbjct: 757 DRLCKEGRLDEASSLLSEM 775



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 188/454 (41%), Gaps = 67/454 (14%)

Query: 34  LFDVVVKRVRKFSDPDIVSD-----SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           L D   K  R    P++  D       P+   YN V++     GK  +     + MH  G
Sbjct: 544 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 603

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
             PDV++YN++I    +AS+      VL+++++ GI     T+ +L+A +          
Sbjct: 604 CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF---------- 653

Query: 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
                        CK                ++  DD V   +L N I    +P      
Sbjct: 654 -------------CK----------------EERFDDAV--GILKNMIKAGVDP------ 676

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              ++  Y TL+ G     R+ D   ++  M R     S     TY T++  L K G + 
Sbjct: 677 ---DNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSAC--TTYNTIIDRLCKEGCLK 731

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  ++  MT  GV AN +TYNI +   C++ ++D+A  LL EM D  +   D VSY  +
Sbjct: 732 QALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM-DTLR---DEVSYTTV 787

Query: 329 IDGFILIDDSAGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           I G    +    A     EM A +G+  T  ++  L+ AF  + +   A  +   M++  
Sbjct: 788 IIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRG 847

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
                ++ +NM++   C++  V++A  + + M   G   +  +Y  L  G+    +  EA
Sbjct: 848 -CSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEA 906

Query: 448 LLLWKEIKER-CEV---KKEGVNADSDLPPPLKP 477
           L + +E+    CE+   K E V   S       P
Sbjct: 907 LQVLEEMASSDCEIDDLKWEDVAPHSQFQTTFGP 940



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 124/332 (37%), Gaps = 68/332 (20%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           TF  N  + T L  G  +        R+     R  D    PD  TY  V+ +L +   +
Sbjct: 125 TFTRNCFLQTLLENGSSD--------RIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQI 176

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           D+A  +L +    G       Y IL + +C+  ++  A E+ R +       PD ++YN 
Sbjct: 177 DKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIP-----SPDAIAYNA 231

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           +I G    +D  GAL F  EM  R +AP                                
Sbjct: 232 IIHGHCRKNDCDGALEFLKEMNERKVAP-------------------------------- 259

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               D+  +N+L++G C+    ++A  ++  M + G  P+  T+ S+ +G+  A K   A
Sbjct: 260 ----DVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA 315

Query: 448 LLLWKEIKER-CE-------------VKKEGVNADSDL-----PPPLKPDEELLDALADI 488
             L   + ER C               K++ V+   DL          PD      LAD 
Sbjct: 316 HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADG 375

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +A E+V  M   G  PN   Y  +
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTL 407


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/558 (23%), Positives = 230/558 (41%), Gaps = 90/558 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRL--AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           +L SG  P   A+++++  L  A S DD    + +LF  + +R              P  
Sbjct: 36  LLHSGVTPSTVAYTSLIHGLCMANSFDD----ARELFADMNRR-----------GCPPSP 80

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YN +++A    G  ++   L  +M E G  PDV+TYN ++    ++SR    + +   
Sbjct: 81  VTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNE 140

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +  +G T    +  +++        ++ A              C++  E++ +D      
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQA--------------CQVFHEMEAKD------ 180

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                                           P+S  Y  L+ G    G++++  ++   
Sbjct: 181 ------------------------------IPPDSWSYGILIDGLAKAGKLNEAYKLF-- 208

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            +R  D+   P  VTY  V+  +  A ++D A ++   M   G   +R T+NIL+  +C+
Sbjct: 209 -QRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCK 267

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++D+A  LL+ M DD  + PDVV+Y+ LI G   I     A     +M  R   PT +
Sbjct: 268 RGKLDEAFRLLKRMTDDGHV-PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV 326

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +  TL+     + + K A +V D M+   +   D+V +N LV G+CR G  E A+ ++  
Sbjct: 327 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQ-SPDVVTYNTLVHGHCRAGQTERARELLSD 385

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M   G  PNV TY +L +G+  A +  EA  ++ ++K             S   P L   
Sbjct: 386 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS------------SGCAPNLFTY 433

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
             L+         A      L++   M   GI P+   Y  +  E+     +++     R
Sbjct: 434 TALILGFCS----AGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILR 489

Query: 539 QDRRRERKRA--AEAFKF 554
           + R   R  A   E ++F
Sbjct: 490 EGRESLRSEAWGDEVYRF 507



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 137/251 (54%), Gaps = 5/251 (1%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +  +P+S  Y  L+ G    G+++D   +    ++   +   P  V YT+++  L  A S
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARNLF---QKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            D AR++ A+M R G P + +TYN+++   C++  +++A +L+++M +D  + PDVV+YN
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHV-PDVVTYN 119

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            ++DG         AL  FNEM   G  P + S+ T++      S+   A +VF EM   
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EA 178

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  D  ++ +L++G  + G + EA ++ +RM ++G  P+  TY  + +G+ LA    E
Sbjct: 179 KDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 447 ALLLWKEIKER 457
           AL L+K ++ +
Sbjct: 239 ALELFKSMRSK 249



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 178/415 (42%), Gaps = 44/415 (10%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHL 111
           D  PD+ +Y  +++  A  GK  +  +LF +M + G  P  +TYNV+I  +C        
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMC-------- 231

Query: 112 LVFVLERILEM-------GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
           L + L+  LE+       G      TF  L+ A+   G L+ A  +++ M +       +
Sbjct: 232 LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVV 291

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
                +    S    DD         LL + +    +P ++ +          TL+ G  
Sbjct: 292 TYSTLISGLCSIARVDDA------RHLLEDMVKRQCKPTVVTQ---------NTLIHGLC 336

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
             GR+ +   +L AM     +   PD VTY T+V    +AG  +RAR++L++M   G+  
Sbjct: 337 KAGRIKEAREVLDAM---VSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAP 393

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N +TY  L+ G C+  ++ +A  +  +M   +   P++ +Y  LI GF       G L  
Sbjct: 394 NVVTYTALVSGLCKANRLPEACGVFAQM-KSSGCAPNLFTYTALILGFCSAGQVDGGLKL 452

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN-----ML 399
           F EM   GI+P  + Y TL      S +   A     E+LR+ R  +   AW        
Sbjct: 453 FGEMVCAGISPDHVVYGTLAAELCKSGRSARAL----EILREGRESLRSEAWGDEVYRFA 508

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           V+G    G +E A   +  M   G  P      SL  G+  + + GEA  + +EI
Sbjct: 509 VDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 32/236 (13%)

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
           ++  + PD  SY ILIDG         A   F ++   G+ P+ ++YT+L+    +++  
Sbjct: 2   NERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSF 61

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             A ++F +M R        V +N++++  C+ G++EEA  +I++M E+G  P+V TY +
Sbjct: 62  DDARELFADMNRRG-CPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 434 LANGISLARKPGEALLLWKE-------------------------IKERCEVKKEGVNAD 468
           + +G+  + +  EALLL+ E                         I + C+V  E     
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHE--MEA 178

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            D+PP       L+D LA    +A    +A ++   M + GI P+   Y  +   M
Sbjct: 179 KDIPPDSWSYGILIDGLA----KAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGM 230


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 214/466 (45%), Gaps = 41/466 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLVF 114
           P++  Y  ++++ +   +  + LQL ++M   G  PD  T+N V++ LC +  R +    
Sbjct: 244 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC-KFDRINEAAK 302

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++ R+L  G T    T+  L+      G ++ A+ +   + +       +I    +  + 
Sbjct: 303 MVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPT----SVIFNTLIHGFV 358

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +   G  DD   V   ++ +                P+   Y +L+ GY  +G V   + 
Sbjct: 359 T--HGRLDDAKAVLSDMVTS------------YGIVPDVCTYNSLIYGYWKKGLVGLALE 404

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  MR +      P+  +YT +V    K G +D A  +L EM+  G+  N + +N L+ 
Sbjct: 405 VLRDMRNK---GCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLIS 461

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C++ +I +A E+ REM      +PDV ++N LI G   +D+   AL    +M + G+ 
Sbjct: 462 AFCKEHRIPEAVEIFREMPRKG-CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVV 520

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++Y TL+ AF    + K A K+ +EM+    + +D + +N L++G CR G V++A+ 
Sbjct: 521 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSL-LDEITYNSLIKGLCRAGEVDKARS 579

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           + E+M  +G  P+  +   L NG+  +    EA+          E +KE V   S     
Sbjct: 580 LFEKMLRDGLVPSSISCNILINGLCRSGMVEEAV----------EFQKEMVLRGS----- 624

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             PD    ++L +   RA      L +   ++  GIPP+   Y  +
Sbjct: 625 -TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTL 669



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 168/387 (43%), Gaps = 25/387 (6%)

Query: 55  KPDTAAYNAVLNACANLGK---PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           KP +  +N +++     G+    K  L   D +  +G  PDV TYN +I    +     L
Sbjct: 344 KPTSVIFNTLIHGFVTHGRLDDAKAVLS--DMVTSYGIVPDVCTYNSLIYGYWKKGLVGL 401

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + VL  +   G    + ++  LV  +   G ++ A  ++  M         +     + 
Sbjct: 402 ALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLIS 461

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            +  E+              +P ++    E P   K   P+   + +L+ G      V +
Sbjct: 462 AFCKEHR-------------IPEAVEIFREMP--RKGCKPDVYTFNSLISGLC---EVDE 503

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
               L  +R         + VTY T+++A ++ G +  AR+++ EM   G   + ITYN 
Sbjct: 504 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNS 563

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+KG C+  ++DKA+ L  +M  D  + P  +S NILI+G         A+ F  EM  R
Sbjct: 564 LIKGLCRAGEVDKARSLFEKMLRDGLV-PSSISCNILINGLCRSGMVEEAVEFQKEMVLR 622

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G  P  +++ +L+     + + +    +F + L+   +  D V +N L+   C+ G V +
Sbjct: 623 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRK-LQAEGIPPDTVTYNTLMSWLCKGGFVYD 681

Query: 412 AKRIIERMKENGFYPNVATYGSLANGI 438
           A  +++   E+GF PN  T+  L   +
Sbjct: 682 ACLLLDEGIEDGFVPNDRTWSILLQSL 708



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 134/317 (42%), Gaps = 24/317 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L +   P    +  +MK       V++    L  +R    +   P+ V Y T++ +L K
Sbjct: 202 MLSRKIPPTLFTFGVVMKALC---AVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSK 258

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A Q+L EM  +G   +  T+N ++ G C+  +I++A +++  M       PD +
Sbjct: 259 CNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG-FTPDDI 317

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  L++G   I     A   F     R   PT + + TL+  F    +   A  V  +M
Sbjct: 318 TYGYLMNGLCKIGRVDAAKDLF----YRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDM 373

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +    +  D+  +N L+ GY + GLV  A  ++  M+  G  PNV +Y  L +G     K
Sbjct: 374 VTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK 433

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  L  E+           +AD      LKP+    + L     +     +A+EI  
Sbjct: 434 IDEAYNLLNEM-----------SADG-----LKPNTVGFNCLISAFCKEHRIPEAVEIFR 477

Query: 504 CMEEHGIPPNKTKYKKI 520
            M   G  P+   +  +
Sbjct: 478 EMPRKGCKPDVYTFNSL 494



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 135/288 (46%), Gaps = 37/288 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP+T  +N +++A     +  + +++F +M   G KPDV T+N +I  LC     KH L 
Sbjct: 450 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL- 508

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           ++L  ++  G+     T+ +L+ A++  G++          +E R+ V +++ +  L D 
Sbjct: 509 WLLRDMISEGVVANTVTYNTLINAFLRRGEI----------KEARKLVNEMVFQGSLLDE 558

Query: 174 SSENE--------GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
            + N         G+ D    +FEK+L + + PSS                  L+ G   
Sbjct: 559 ITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISC-------------NILINGLCR 605

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            G V + V     M  +    S PD VT+ ++++ L +AG ++    +  ++   G+P +
Sbjct: 606 SGMVEEAVEFQKEMVLR---GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 662

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            +TYN L+   C+   +  A  LL E  +D  + P+  +++IL+   +
Sbjct: 663 TVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFV-PNDRTWSILLQSLV 709



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 34/221 (15%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
            Y  ++  L   G      ++L +M   G+      +  +++ Y +     +   L+ EM
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 166

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            +    EP   SYN++++  +  +    A   F +M +R I PT  ++  +MKA    ++
Sbjct: 167 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNE 226

Query: 373 PKLANKVFDEMLRDPRVKVDIV----------------------------------AWNM 398
              A  V  +M +   V   ++                                   +N 
Sbjct: 227 VDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 286

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           ++ G C+   + EA +++ RM   GF P+  TYG L NG+ 
Sbjct: 287 VILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLC 327



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G +P   + + +++ L  SG             +V+   +F    ++  S PD   
Sbjct: 584 MLRDGLVPSSISCNILINGLCRSG-------------MVEEAVEFQKEMVLRGSTPDIVT 630

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N+++N     G+ +  L +F ++   G  PD +TYN ++    +    +    +L+  +
Sbjct: 631 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGI 690

Query: 121 EMGIT 125
           E G  
Sbjct: 691 EDGFV 695



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 15/156 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G + +   ++T+++     G+             +K  RK  +  +   S  D   
Sbjct: 514 MISEGVVANTVTYNTLINAFLRRGE-------------IKEARKLVNEMVFQGSLLDEIT 560

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN+++      G+  K   LF++M   G  P  ++ N++I  LC     +  + F  E +
Sbjct: 561 YNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMV 620

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           L  G T  + TF SL+      G +E   T+ + ++
Sbjct: 621 LR-GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 655


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 211/450 (46%), Gaps = 33/450 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLV 113
           KP+   Y  ++      G+ ++ +++   M + G +PDVL YN V+I LC     +    
Sbjct: 478 KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKD 537

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           +++E I E G+   + T+ +L+  Y   G++++A+   + M         ++    ++ Y
Sbjct: 538 YLVEMI-ERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGY 596

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSE----------------------PPLLPKTFAP 211
             E  G   +   +F  +L  S++P                            L K   P
Sbjct: 597 CKE--GSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVP 654

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +   Y +++ G+  +G +    ++   M ++      P+ +TY  +++ L KAG ++RAR
Sbjct: 655 DVFTYNSIISGFCKQGGIGKAFQLHEYMCQK---GISPNIITYNALINGLCKAGEIERAR 711

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++   +   G+  N +TY  ++ GYC+   + KA  L  EM     + PD   Y+ LIDG
Sbjct: 712 ELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKG-VPPDSFVYSALIDG 770

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                ++  AL+ F E   +G A T  S   LM  F  S +   AN++ ++M+ D  VK 
Sbjct: 771 CRKEGNTEKALSLFLESVQKGFASTS-SLNALMDGFCKSGKVIEANQLLEDMV-DKHVKP 828

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V + +L++ +C+ G ++EA++    M++    PN  TY +L +G ++A +  E   L+
Sbjct: 829 DHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALF 888

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            E+  + +++ +GV     +   LK  + +
Sbjct: 889 DEMIAK-DIEPDGVTWSVMIDAHLKEGDHV 917



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 181/392 (46%), Gaps = 23/392 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP   AY A+++     G   +  ++ ++M   G K ++ TYN ++K   +         
Sbjct: 338 KPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADA 397

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  ++ +GI     T+ +++  Y+   +    + ++  M+  + ++        +    
Sbjct: 398 LLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMK--KSNLVPTAYTCGMIING 455

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  +D   VFE ++   +              PN+ IYTTL+KG++ EGR  + VR
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGVK-------------PNAVIYTTLIKGHVQEGRFQEAVR 502

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M ++      PD + Y +V+  L K+  M+ A+  L EM   G+  N  TY  L+ 
Sbjct: 503 ILKVMDKK---GVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIH 559

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+  ++  A    +EM     I P+ V    LIDG+     +  A + F  M  R + 
Sbjct: 560 GYCKSGEMQVADRYFKEML-GCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVH 618

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   +Y+ L+     + + + A ++  E L    V  D+  +N ++ G+C+ G + +A +
Sbjct: 619 PDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVP-DVFTYNSIISGFCKQGGIGKAFQ 677

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGE 446
           + E M + G  PN+ TY +L NG+    K GE
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLC---KAGE 706



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/508 (23%), Positives = 213/508 (41%), Gaps = 63/508 (12%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           +F +  + ++   D   Y  ++NA    G  K+  +L  +M E G  P ++TYNV+I   
Sbjct: 222 RFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGL 281

Query: 104 ARASRKHLLVFVLERILE-MGITLCMTTFQSLVAAYVGFG--------DLEIAETIVQAM 154
            RA       F L+++++  G+   + T+  L+    GFG         L + E   + +
Sbjct: 282 CRAGEVD-EAFELKKLMDKKGLVADVFTYSILID---GFGKQKRCTEAKLMLEEMFSKGL 337

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI--NPSSEPPLLPKT---- 208
           + G      +I            +GD  +   V E++L   +  N  +   L+       
Sbjct: 338 KPGHVAYTALIDGF-------MRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFG 390

Query: 209 ----------------FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
                             P+++ Y  +++GY+ E   S    +L  M++       P   
Sbjct: 391 DMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSN---LVPTAY 447

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           T   +++ L + GS++ A +V   M  +GV  N + Y  L+KG+ Q+ +  +A  +L+ M
Sbjct: 448 TCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVM 507

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            D   ++PDV+ YN +I G         A  +  EM  RG+ P   +Y  L+  +  S +
Sbjct: 508 -DKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGE 566

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            ++A++ F EML       D+V    L++GYC+ G   EA  I   M     +P+V TY 
Sbjct: 567 MQVADRYFKEMLGCGIAPNDVVC-TALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYS 625

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           +L +G+    K   A+ L  E  E+                 L PD    +++     + 
Sbjct: 626 ALIHGLLRNGKLQGAMELLSEFLEK----------------GLVPDVFTYNSIISGFCKQ 669

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
               KA ++   M + GI PN   Y  +
Sbjct: 670 GGIGKAFQLHEYMCQKGISPNIITYNAL 697



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 144/309 (46%), Gaps = 21/309 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           YT L+  +   G   +  R+L  M   E+    P  VTY  V+  L +AG +D A ++  
Sbjct: 239 YTHLINAHFRAGNAKEGKRLLFEM---EEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKK 295

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M + G+ A+  TY+IL+ G+ +Q +  +AK +L EM     ++P  V+Y  LIDGF+  
Sbjct: 296 LMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKG-LKPGHVAYTALIDGFMRQ 354

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            DS  A     EM ARG+     +Y  L+K        + A+ + +EM+    +K D   
Sbjct: 355 GDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIM-VGIKPDTQT 413

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N ++EGY +       K ++  MK++   P   T G + NG+       +A  +++ + 
Sbjct: 414 YNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIM- 472

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                          +   +KP+  +   L    V+   F++A+ I+  M++ G+ P+  
Sbjct: 473 ---------------VSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVL 517

Query: 516 KYKKIYVEM 524
            Y  + + +
Sbjct: 518 CYNSVIIGL 526



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 172/423 (40%), Gaps = 91/423 (21%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+A+++     GK +  ++L  +  E G  PDV TYN +I    +         +
Sbjct: 619 PDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQL 678

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E + + GI+  + T+ +L+      G++E A                            
Sbjct: 679 HEYMCQKGISPNIITYNALINGLCKAGEIERAR--------------------------- 711

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                     E+F+ +      P        K  A N+  Y T++ GY   G +S   R+
Sbjct: 712 ----------ELFDGI------PG-------KGLAHNAVTYATIIDGYCKSGNLSKAFRL 748

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +      PD   Y+ ++    K G+ ++A  +  E  + G  A+  + N L+ G
Sbjct: 749 FDEMTLK---GVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDG 804

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILID-----GFI------LIDDSA----- 339
           +C+  ++ +A +LL +M D   ++PD V+Y ILID     GF+       +D        
Sbjct: 805 FCKSGKVIEANQLLEDMVDK-HVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMP 863

Query: 340 GALTF-------------------FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            ALT+                   F+EM A+ I P  ++++ ++ A           K+ 
Sbjct: 864 NALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLV 923

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           D+ML+     V     ++L++  CR   V E  +++E+++E G   ++AT  +L      
Sbjct: 924 DDMLKKGG-NVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHK 982

Query: 441 ARK 443
           A K
Sbjct: 983 AGK 985



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 35  FDVVVKRVRKFS--DPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           +++  +R   F+  D  I  D +PD   ++ +++A    G   K L+L D M + G    
Sbjct: 875 YNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVS 934

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
               +V+I    R      ++ VLE+I E G+ L + T  +LV  +   G ++ A  +++
Sbjct: 935 KNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLK 994

Query: 153 AM 154
           +M
Sbjct: 995 SM 996


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 200/451 (44%), Gaps = 61/451 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y+ V+N     G+  K  +L + M   G KP+   Y  +I L  R  +       
Sbjct: 279 PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 338

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              ++  GI      + +L+  +   GD+  A      M    RD+       D+  Y++
Sbjct: 339 FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS--RDITP-----DVLTYTA 391

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G     D V    L +         +  K   P+S  +T L+ GY   G + D  R+
Sbjct: 392 IISGFCQIGDMVEAGKLFHE--------MFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M +       P+ VTYTT++  L K G +D A ++L EM +IG+  N  TYN ++ G
Sbjct: 444 HNHMIQA---GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500

Query: 296 -----------------------------------YCQQLQIDKAKELLREMADDAKIEP 320
                                              YC+  ++DKA+E+L+EM     ++P
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG-LQP 559

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            +V++N+L++GF L           N M A+GIAP   ++ +L+K + + +  K A  ++
Sbjct: 560 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY 619

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            +M     V  D   +  LV+G+C+   ++EA  + + MK  GF  +V+TY  L  G   
Sbjct: 620 KDMCSRG-VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLK 678

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
            +K  EA    +E+ +  ++++EG+ AD ++
Sbjct: 679 RKKFLEA----REVFD--QMRREGLAADKEI 703



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 185/401 (46%), Gaps = 31/401 (7%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASR---KHLLVFVLERILEMGITLCMTTFQSLVA 136
           +F +  E G   +V +YN++I    +  R    H L+ ++E     G T  + ++ ++V 
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMEL---KGYTPDVISYSTVVN 289

Query: 137 AYVGFGDLEIAETIVQAM-REGRRD-----------VCKIIRELDLEDYSSENEGDDDDD 184
            Y  FG+L+    +++ M R+G +            +C+I +  + E+  SE        
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLMKGYMNEGRVSDTVRML 236
           D V    L +      +     K F         P+   YT ++ G+   G + +  ++ 
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M  +      PD VT+T +++   KAG M  A +V   M + G   N +TY  L+ G 
Sbjct: 410 HEMFCK---GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 466

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++  +D A ELL EM     ++P++ +YN +++G     +   A+    E  A G+   
Sbjct: 467 CKEGDLDSANELLHEMWKIG-LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++YTTLM A+  S +   A ++  EML    ++  IV +N+L+ G+C  G++E+ ++++
Sbjct: 526 TVTYTTLMDAYCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             M   G  PN  T+ SL     +      A  ++K++  R
Sbjct: 585 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 181/423 (42%), Gaps = 68/423 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G LP    ++T++      GD             ++   KF       D  PD   
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGD-------------IRAASKFFYEMHSRDITPDVLT 388

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++    +G   +  +LF +M   G +PD +T+  +I    +A        V   ++
Sbjct: 389 YTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G +  + T+ +L+                         +CK              EGD
Sbjct: 449 QAGCSPNVVTYTTLIDG-----------------------LCK--------------EGD 471

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D  +E+  ++    + P             N   Y +++ G    G + + V+++G   
Sbjct: 472 LDSANELLHEMWKIGLQP-------------NIFTYNSIVNGLCKSGNIEEAVKLVGEFE 518

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               NA   D VTYTT++ A  K+G MD+A+++L EM   G+    +T+N+L+ G+C   
Sbjct: 519 AAGLNA---DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++  ++LL  M     I P+  ++N L+  + + ++   A   + +M +RG+ P   +Y
Sbjct: 576 MLEDGEKLLNWMLAKG-IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+K    +   K A  +F EM +     V +  +++L++G+ +     EA+ + ++M+
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEM-KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMR 693

Query: 421 ENG 423
             G
Sbjct: 694 REG 696


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 187/401 (46%), Gaps = 20/401 (4%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +YN VLN     G   K    + +M + G  PDV+TY+ +I    +A      +
Sbjct: 197 SPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +++ G+     T+ S++  Y   G  + A   ++ MR    +   ++    L +Y
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP-NVVTYSSLMNY 315

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +N G   +  ++F+ +               +   P+   Y TL++GY  +G + +  
Sbjct: 316 LCKN-GRSTEARKIFDSMTK-------------RGLEPDIATYRTLLQGYATKGALVEMH 361

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M R   N   PDH  +  ++ A  K   +D+A  V ++M + G+  N + Y  ++
Sbjct: 362 ALLDLMVR---NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVI 418

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+   +D A     +M D+  + P+++ Y  LI G    D    A     EM  RGI
Sbjct: 419 DVLCKSGSVDDAMLYFEQMIDEG-LTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGI 477

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               I + +++ +     +   + K+FD M+R   VK DI+ +N L++G C  G ++EA 
Sbjct: 478 CLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEAT 536

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++  M   G  P++ TYG+L NG     +  +AL L+KE+
Sbjct: 537 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEM 577



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 216/505 (42%), Gaps = 75/505 (14%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P V TY ++I  C RA R  L    L  +++ G  +   T
Sbjct: 70  PAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAIT 129

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG--DDDDDDEVF 188
           F  L+       D   ++ +   +R      C      D+  Y++  +G  D++   E  
Sbjct: 130 FTPLLKGLCA--DKRTSDAMDIVLRRMTELGCIP----DVFSYNNLLKGLCDENRSQEAL 183

Query: 189 EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
           E L   + +     P       P+   Y T++ G+  EG   D+ +         D    
Sbjct: 184 ELLHMMADDRGGGSP-------PDVVSYNTVLNGFFKEG---DSDKAYSTYHEMLDRGIL 233

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD VTY+++++AL KA +MD+A +VL  M + GV  + +TYN +L GYC   Q  +A   
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L++M  D  +EP+VV+Y+ L++       S  A   F+ M  RG+ P   +Y TL++ +A
Sbjct: 294 LKKMRSDG-VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYA 352

Query: 369 LSSQPKLANKVFDEMLRD-----------------PRVKVD-----------------IV 394
                   + + D M+R+                  + KVD                 +V
Sbjct: 353 TKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVV 412

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +  +++  C+ G V++A    E+M + G  PN+  Y SL +G+    K  +A  L  E+
Sbjct: 413 CYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM 472

Query: 455 KER--C-----------EVKKEGVNADSD------LPPPLKPDEELLDALADICVRAAFF 495
            +R  C              KEG   +S+      +   +KPD    + L D C  A   
Sbjct: 473 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            +A +++A M   G+ P+   Y  +
Sbjct: 533 DEATKLLASMVSVGVKPDIVTYGTL 557



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/467 (22%), Positives = 211/467 (45%), Gaps = 56/467 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-KPDTA 59
           M+++G +P    +++++    +SG   P E++      +K++R        SD  +P+  
Sbjct: 262 MVKNGVMPDCMTYNSILHGYCSSGQ--PKEAIG----TLKKMR--------SDGVEPNVV 307

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y++++N     G+  +  ++FD M + G +PD+ TY  +++  A       +  +L+ +
Sbjct: 308 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD---VC--KIIRELDLEDYS 174
           +  GI      F  L+ AY     ++ A  +   MR+   +   VC   +I  L      
Sbjct: 368 VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL------ 421

Query: 175 SENEGDDDDDDEVFEKLLPNSINPS-------------------SEP---PLLPKTFAPN 212
               G  DD    FE+++   + P+                   +E     +L +    N
Sbjct: 422 -CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLN 480

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           +  + +++  +  EGRV ++ ++   M R       PD +TY T++     AG MD A +
Sbjct: 481 TIFFNSIIDSHCKEGRVIESEKLFDLMVRI---GVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +LA M  +GV  + +TY  L+ GYC+  ++D A  L +EM     + P++++YNI++ G 
Sbjct: 538 LLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGL 596

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKV 391
                +A A   +  +   G      +Y  ++     ++    A ++F  + L D  +++
Sbjct: 597 FHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD--LQL 654

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +   +N+++    + G ++EAK +      NG  P+V TY  +A  +
Sbjct: 655 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 701



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 209/456 (45%), Gaps = 37/456 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G LP V  +S++++ L  A   D   +++++ + +VK           +   PD  
Sbjct: 227 MLDRGILPDVVTYSSIIAALCKAQAMD---KAMEVLNTMVK-----------NGVMPDCM 272

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++L+   + G+PK+ +    +M   G +P+V+TY+ ++    +  R      + + +
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENE 178
            + G+   + T+++L+  Y   G L     ++  M R G +    +   L +  Y+ + +
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL-ICAYAKQEK 391

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
              D    VF K+  + +NP             N   Y T++      G V D +     
Sbjct: 392 --VDQAMLVFSKMRQHGLNP-------------NVVCYGTVIDVLCKSGSVDDAMLYFEQ 436

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    D    P+ + YT+++  L      D+A +++ EM   G+  N I +N ++  +C+
Sbjct: 437 MI---DEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK 493

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++ ++++L   M     ++PD+++YN LIDG  L      A      M + G+ P  +
Sbjct: 494 EGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y TL+  +   S+   A  +F EM+    V  +I+ +N++++G         AK +   
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGLFHTRRTAAAKELYVS 611

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           + ++G    ++TY  + +G+       EAL +++ +
Sbjct: 612 ITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 647


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 221/511 (43%), Gaps = 93/511 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           M+R G  P+V  ++ +V  L A G               G   +   ++ +V    +  +
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 48  PD----IVS------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
            D    +VS      ++KP+   +N+++N     G+ +   ++FD+M   G  PDV++YN
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            ++    +    H  + V   + + G+   + TF SL+ A    G+LE A  +V  MRE 
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
              + ++     ++ +    +G  DD     E++    I PS                Y 
Sbjct: 181 GLRMNEVTFTALIDGFC--KKGFLDDALLAVEEMRKCGIQPSVV-------------CYN 225

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ GY   GR+ D  R L  +R  E     PD VTY+T++S   K G++D A Q+  +M
Sbjct: 226 ALINGYCKLGRM-DLAREL--IREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 282

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            + GV  + ITY+ L++G C++ +++ A EL   M     ++PD  +Y  LIDG     +
Sbjct: 283 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENML-QLGVQPDEFTYTTLIDGHCKEGN 341

Query: 338 SAGALTFFNEMRARGIAPTKISYTT----------------------------------- 362
              AL+  +EM  +G+ P  ++Y+                                    
Sbjct: 342 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 401

Query: 363 ---------------LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
                          L+K F +    K A+KV+  ML D   K+D   +++L+ G+CR G
Sbjct: 402 LMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSML-DRNWKLDGSVYSILIHGHCRGG 460

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            V +A    ++M  +GF PN  +  SL  G+
Sbjct: 461 NVRKALSFHKQMLRSGFSPNSTSTISLVRGL 491



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 206/444 (46%), Gaps = 45/444 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN ++ A    G+ ++ + +   M   G  P+ +TYN ++    RA        V
Sbjct: 8   PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67

Query: 116 LERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDY 173
           +  + E G     + TF S+V      G +E A  +   M REG           D+  Y
Sbjct: 68  VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP--------DVVSY 119

Query: 174 SSENEGDDDDDDEVFEKL--LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           ++   G        + K+  L  S+   SE  +  +   P+   +T+L+      G +  
Sbjct: 120 NTLLSG--------YCKVGCLHESLAVFSE--MTQRGLVPDVVTFTSLIHATCKAGNLEQ 169

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V ++  MR   +     + VT+T ++    K G +D A   + EM + G+  + + YN 
Sbjct: 170 AVALVAQMR---ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 226

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GYC+  ++D A+EL+REM +  +++PDVV+Y+ +I G+  + +   A     +M  +
Sbjct: 227 LINGYCKLGRMDLARELIREM-EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKK 285

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P  I+Y++L++      +   A ++F+ ML+   V+ D   +  L++G+C+ G VE+
Sbjct: 286 GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQ-LGVQPDEFTYTTLIDGHCKEGNVEK 344

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSD 470
           A  + + M   G  P+V TY  L NG+S + +  EA  LL+K   E              
Sbjct: 345 ALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE-------------- 390

Query: 471 LPPPLKPDEELLDALADICVRAAF 494
              P+ PD    DAL   C +A F
Sbjct: 391 --DPV-PDNIKYDALMLCCSKAEF 411



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 130/276 (47%), Gaps = 28/276 (10%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R GV  N  TYNIL++  C + ++++A  ++ +M   A   P+ V+YN L+  F    
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDM-RGAGCAPNAVTYNTLVAAFCRAG 59

Query: 337 DSAGALTFFNEMRARGIA-PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           +  GA    + MR  G A P  +++ +++     + + + A KVFDEM+R+  +  D+V+
Sbjct: 60  ELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREG-LAPDVVS 118

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N L+ GYC++G + E+  +   M + G  P+V T+ SL +    A    +A+ L  +++
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           ER                 L+ +E    AL D   +  F   AL  V  M + GI P+  
Sbjct: 179 ER----------------GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 222

Query: 516 KYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEA 551
            Y  +          + +    R D  RE  R  EA
Sbjct: 223 CYNAL---------INGYCKLGRMDLARELIREMEA 249


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 189/402 (47%), Gaps = 20/402 (4%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +Y  V+N     G   K    + +M + G  PDV+TYN +I    +A      +
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM 251

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +++ G+     T+ S++  Y   G  + A   ++ MR    +   +   L L DY
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL-LMDY 310

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +N G   +  ++F+ +    + P                 Y TL++GY  +G + +  
Sbjct: 311 LCKN-GRCMEARKIFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMH 356

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M R   N  HPDH  ++ ++ A  K G +D+A  V ++M + G+  N +TY  ++
Sbjct: 357 GLLDLMVR---NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+  +++ A     +M D+  + P  + YN LI G    +    A     EM  RGI
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               I + +++ +     +   + K+F+ M+R   VK +++ +N L+ GYC  G ++EA 
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKMDEAM 531

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +++  M   G  PN  TY +L NG     +  +AL+L+KE++
Sbjct: 532 KLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEME 573



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/519 (21%), Positives = 233/519 (44%), Gaps = 51/519 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G LP V  ++++++ L  A   D  +E   + + +VK           +   PD  
Sbjct: 222 MLDRGILPDVVTYNSIIAALCKAQAMDKAME---VLNTMVK-----------NGVMPDCM 267

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++L+   + G+PK+ +    +M   G +PDV+TY++++    +  R      + + +
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+   +TT+ +L+  Y   G L     ++  M          +  + +  Y+   +G
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA--KQG 385

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             D    VF K+    +NP             N+  Y  ++      GRV D +     M
Sbjct: 386 KVDQAMLVFSKMRQQGLNP-------------NAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               D    P ++ Y +++  L      +RA +++ EM   G+  N I +N ++  +C++
Sbjct: 433 I---DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 489

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ ++++L  E+     ++P+V++YN LI+G+ L      A+   + M + G+ P  ++
Sbjct: 490 GRVIESEKLF-ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+TL+  +   S+ + A  +F EM     V  DI+ +N++++G  +      AK +  R+
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
            E+G    ++TY  + +G+   +   +AL +++ +   C +              LK + 
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL---CLMD-------------LKLEA 651

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
              + + D  ++     +A ++      +G+ PN   Y+
Sbjct: 652 RTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR 690



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 188/450 (41%), Gaps = 70/450 (15%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    PD+ TY ++I  C RA R  L    L  +++ G  +    
Sbjct: 65  PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIA 124

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+                       + +C   R  D  D              V  +
Sbjct: 125 FTPLL-----------------------KGLCADKRTSDAMDI-------------VLRR 148

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +        +E   +P  F+     Y  L+KG  +E R  + + +L  M       S PD
Sbjct: 149 M--------TELGCIPNVFS-----YNILLKGLCDENRSQEALELLHMMADDRGGGSPPD 195

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            V+YTTV++   K G  D+A     EM   G+  + +TYN ++   C+   +DKA E+L 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLN 255

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
            M  +  + PD ++YN ++ G+        A+ F  +MR+ G+ P  ++Y+ LM     +
Sbjct: 256 TMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
            +   A K+FD M +   +K +I  +  L++GY   G + E   +++ M  NG +P+   
Sbjct: 315 GRCMEARKIFDSMTKRG-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           +  L    +   K  +A+L++ ++++      +G+N          P+     A+  I  
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQ------QGLN----------PNAVTYGAVIGILC 417

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++     A+     M + G+ P    Y  +
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 185/441 (41%), Gaps = 74/441 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P +  + T++   A  G    VE   L D++V+           +   PD   
Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKG--ALVEMHGLLDLMVR-----------NGIHPDHYV 373

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++ ++ A A  GK  + + +F +M + G  P+ +TY  +I +  ++ R    +   E+++
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G++     + SL+         E AE ++  M +  R +C      +    S   EG 
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHCKEGR 491

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++FE ++   + P             N   Y TL+ GY   G++ + +++L  M 
Sbjct: 492 VIESEKLFELMVRIGVKP-------------NVITYNTLINGYCLAGKMDEAMKLLSGMV 538

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   P+ VTY+T+++   K   M+ A  +  EM   GV  + ITYNI+L+G  Q  
Sbjct: 539 SV---GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTK 357
           +   AKEL   + +    + ++ +YNI++ G     L DD   AL  F  +         
Sbjct: 596 RTAAAKELYVRITESGT-QIELSTYNIILHGLCKNKLTDD---ALQMFQNL--------- 642

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
                LM                        +K++   +N++++   ++G  +EAK +  
Sbjct: 643 ----CLMD-----------------------LKLEARTFNIMIDALLKVGRNDEAKDLFV 675

Query: 418 RMKENGFYPNVATYGSLANGI 438
               NG  PN  TY  +A  I
Sbjct: 676 AFSSNGLVPNYWTYRLMAENI 696



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 31/301 (10%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R   +   PD  TY  ++    +AG +D     L  + + G   + I +  LLKG C 
Sbjct: 75  MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134

Query: 299 QLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---RARGIA 354
             +   A ++ LR M +   I P+V SYNIL+ G    + S  AL   + M   R  G  
Sbjct: 135 DKRTSDAMDIVLRRMTELGCI-PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSP 193

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  +SYTT++  F        A   + EML D  +  D+V +N ++   C+   +++A  
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEML-DRGILPDVVTYNSIIAALCKAQAMDKAME 252

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M +NG  P+  TY S+ +G   + +P EA+   K++      + +GV         
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM------RSDGV--------- 297

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------KKIYVEMH 525
            +PD      L D   +     +A +I   M + G+ P  T Y         K   VEMH
Sbjct: 298 -EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 526 S 526
            
Sbjct: 357 G 357



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 120/280 (42%), Gaps = 41/280 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G  P+V  ++T+++    +G     E++KL   +V               KP+T  
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMD--EAMKLLSGMVS-----------VGLKPNTVT 548

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++N    + + +  L LF +M   G  PD++TYN++++   +  R      +  RI 
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE-- 178
           E G  + ++T+  ++    G    ++ +  +Q      +++C +  +L+   ++   +  
Sbjct: 609 ESGTQIELSTYNIILH---GLCKNKLTDDALQMF----QNLCLMDLKLEARTFNIMIDAL 661

Query: 179 ---GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G +D+  ++F     N +              PN   Y  + +  + +G + +  ++
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGL-------------VPNYWTYRLMAENIIGQGLLEELDQL 708

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
             +M   EDN    D      +V  L++ G + RA   L+
Sbjct: 709 FLSM---EDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 227/518 (43%), Gaps = 58/518 (11%)

Query: 8   PHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVL 65
           P V  +ST+V  L  SG  DD    + +L + +V +              P+   Y+++L
Sbjct: 218 PDVFTYSTIVDSLVKSGKVDD----ACRLVEAMVSK-----------GCSPNVVTYSSLL 262

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT 125
           +     GK  +   L  +M   G  P+++TYN +I    +  R      +LE +++ G  
Sbjct: 263 HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 322

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
             + T+  L+ A+   G  E A  +V+ M E +  V  +     L D   +      D+ 
Sbjct: 323 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE-KGYVPNLFTYNSLLDMFCKK-----DEV 376

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           E   +LL +         ++ K   PN   Y T++ G     +V + V +L  M     N
Sbjct: 377 ERACQLLSS---------MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML---SN 424

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD VT+ T++ A+ K   +D A ++   +   G   N +TYN L+ G C+  + D+A
Sbjct: 425 NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQA 484

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           + LLREM       PD+++YN +IDG         A   F +M + G+AP  ++Y+ ++ 
Sbjct: 485 EYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVIS 544

Query: 366 AFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           +         AN V + ML+   DP      + +  L++G+C+ G +++A  I++ +   
Sbjct: 545 SLCKWRFMDEANNVLELMLKNGFDPGA----ITYGTLIDGFCKTGNLDKALEILQLLLSK 600

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G YP+V T+    +              W  + +R  +++ G   ++ L   L PD    
Sbjct: 601 GSYPDVVTFSIFID--------------W--LSKRGRLRQAGELLETMLRAGLVPDTVTY 644

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + L      A+    A+++   M + G  P+   Y  +
Sbjct: 645 NTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTL 682



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 210/467 (44%), Gaps = 39/467 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD+  YN ++N  +   +    ++L ++M + G  P+V +YN ++    +A+R    +++
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--IIRELDLEDY 173
           LE+++  G   C     S      G   L+  +   + M +  +  C+  +I    L D 
Sbjct: 102 LEQMVMRG---CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDG 158

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                GD D   E+  K             +  + + PN+  Y  +M G  +  ++   +
Sbjct: 159 FCR-VGDLDGAVELVRK-------------MTERGYRPNAITYNNIMHGLCSGRKLDSAL 204

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           ++   M  +E  +  PD  TY+T+V +LVK+G +D A +++  M   G   N +TY+ LL
Sbjct: 205 QLFKEM--EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLL 262

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++D+A  LL+ M       P++V+YN +IDG   +     A     EM   G 
Sbjct: 263 HGLCKAGKLDEATALLQRMTRSG-CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGC 321

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++YT L+ AF    + + A  + + M+    V  ++  +N L++ +C+   VE A 
Sbjct: 322 QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVP-NLFTYNSLLDMFCKKDEVERAC 380

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           +++  M + G  PNV +Y ++  G+  A K  E +LL +++                L  
Sbjct: 381 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM----------------LSN 424

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              PD    + + D   +      A E+   ++E G  PN   Y  +
Sbjct: 425 NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSL 471



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 151/339 (44%), Gaps = 31/339 (9%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           + KT  P+S  Y T++ G     R+ D +R+L  M    DN   P+  +Y TV+    KA
Sbjct: 36  MSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMV---DNGFAPNVFSYNTVLHGFCKA 92

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
             ++ A  +L +M   G P + ++Y  ++ G C+  Q+D+A  ++ +M      +P+V++
Sbjct: 93  NRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG-CQPNVIT 151

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y  L+DGF  + D  GA+    +M  RG  P  I+Y  +M       +   A ++F EM 
Sbjct: 152 YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEME 211

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
                  D+  ++ +V+   + G V++A R++E M   G  PNV TY SL +G+  A K 
Sbjct: 212 ESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKL 271

Query: 445 GEAL-LLWKEIKERCEVKKEGVNA----------------------DSDLPPPLKPDEEL 481
            EA  LL +  +  C       N                       D    P +     L
Sbjct: 272 DEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVL 331

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           LDA    C +A     A+ +V  M E G  PN   Y  +
Sbjct: 332 LDAFCK-CGKA---EDAIGLVEVMVEKGYVPNLFTYNSL 366



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/523 (21%), Positives = 220/523 (42%), Gaps = 88/523 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M++ G  P+V  + T+V      GD DG VE           VRK ++       +P+  
Sbjct: 140 MIQRGCQPNVITYGTLVDGFCRVGDLDGAVE----------LVRKMTE----RGYRPNAI 185

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLVFVLER 118
            YN +++   +  K    LQLF +M E G+  PDV TY+ ++    ++ +      ++E 
Sbjct: 186 TYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEA 245

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           ++  G +  + T+ SL+      G L+ A  ++Q M    R  C                
Sbjct: 246 MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT---RSGC---------------- 286

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                                          +PN   Y T++ G+   GR+ +   +L  
Sbjct: 287 -------------------------------SPNIVTYNTIIDGHCKLGRIDEAYHLLEE 315

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    D    P+ VTYT ++ A  K G  + A  ++  M   G   N  TYN LL  +C+
Sbjct: 316 MV---DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 372

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++++A +LL  M     + P+VVSYN +I G          +    +M +    P  +
Sbjct: 373 KDEVERACQLLSSMIQKGCV-PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIV 431

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++ T++ A   + +  +A ++F+ ++++     ++V +N LV G C+    ++A+ ++  
Sbjct: 432 TFNTIIDAMCKTYRVDIAYELFN-LIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLRE 490

Query: 419 M-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           M ++ G  P++ TY ++ +G+  +++   A  L+ ++                L   L P
Sbjct: 491 MTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM----------------LSDGLAP 534

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D+     +     +  F  +A  ++  M ++G  P    Y  +
Sbjct: 535 DDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTL 577



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 56/314 (17%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K    ++ ++ ++++G  + G+ SD V       R+      PD VTY T+++ L K+  
Sbjct: 4   KGLKAHAGVHKSILRGLCDAGQCSDAVLHF----REMSKTCPPDSVTYNTMINGLSKSDR 59

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A ++L EM   G   N  +YN +L G+C+  +++ A  LL +M       PDVVSY 
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG-CPPDVVSYT 118

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +I+G   +D    A    ++M  RG  P  I+Y T                        
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGT------------------------ 154

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
                       LV+G+CR+G ++ A  ++ +M E G+ PN  TY ++ +G+   RK   
Sbjct: 155 ------------LVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDS 202

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           AL L+KE++E               PP +     ++D+L    V++     A  +V  M 
Sbjct: 203 ALQLFKEMEE-----------SGSCPPDVFTYSTIVDSL----VKSGKVDDACRLVEAMV 247

Query: 507 EHGIPPNKTKYKKI 520
             G  PN   Y  +
Sbjct: 248 SKGCSPNVVTYSSL 261



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 163/403 (40%), Gaps = 74/403 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+V  ++ ++      G     +++ L +V+V++              P+   
Sbjct: 316 MVDGGCQPNVVTYTVLLDAFCKCGK--AEDAIGLVEVMVEK-----------GYVPNLFT 362

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++L+      + ++  QL   M + G  P+V++YN +I    +A++ H  V +LE++L
Sbjct: 363 YNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML 422

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                  + TF +++ A      ++IA  +   ++E     C      +L  Y+S   G 
Sbjct: 423 SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG---CTP----NLVTYNSLVHG- 474

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLL-----PKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                      L  S        LL      +  +P+   Y T++ G     RV    ++
Sbjct: 475 -----------LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKL 523

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M     +   PD VTY+ V+S+L K   MD A  VL  M + G     ITY  L+ G
Sbjct: 524 FLQML---SDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDG 580

Query: 296 YCQQLQIDKAKELLR----------------------------------EMADDAKIEPD 321
           +C+   +DKA E+L+                                  E    A + PD
Sbjct: 581 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPD 640

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
            V+YN L+ GF     +  A+  F  MR  G  P   +YTTL+
Sbjct: 641 TVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 33/276 (11%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           SG  P++  ++++V  L  S         + FD     +R+ +     S   PD   YN 
Sbjct: 459 SGCTPNLVTYNSLVHGLCKS---------RRFDQAEYLLREMTRKQGCS---PDIITYNT 506

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           V++      +  +  +LF QM   G  PD +TY+++I    +         VLE +L+ G
Sbjct: 507 VIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNG 566

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
                 T+ +L+  +   G+L+ A  I+Q +   +     ++      D+ S+  G    
Sbjct: 567 FDPGAITYGTLIDGFCKTGNLDKALEILQLLLS-KGSYPDVVTFSIFIDWLSK-RGRLRQ 624

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             E+ E +L   +              P++  Y TL+KG+ +  R  D V +   MR+  
Sbjct: 625 AGELLETMLRAGL-------------VPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQC- 670

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
                PD+ TYTT+V  LV   S    + +LAE+++
Sbjct: 671 --GCEPDNATYTTLVGHLVDKKSY---KDLLAEVSK 701



 Score = 42.0 bits (97), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 20/157 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML++G+ P    + T++     +G+ D  +E ++L       + K S PD+V+       
Sbjct: 562 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL------LSKGSYPDVVT------- 608

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            ++  ++  +  G+ ++  +L + M   G  PD +TYN ++K    ASR    V + E +
Sbjct: 609 -FSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVM 667

Query: 120 LEMGITLCMTTFQSLVAAYV---GFGDL--EIAETIV 151
            + G      T+ +LV   V    + DL  E+++++V
Sbjct: 668 RQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMV 704


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 223/487 (45%), Gaps = 46/487 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++T+++ L   G    +E+  L   V K V K    D+V+        
Sbjct: 217 MVEIGLTPVVITFNTLINGLCLEGR--VLEAAAL---VNKMVGKGLHIDVVT-------- 263

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G  K  L L  +M E   KPDV+ Y+ +I    +        ++   +L
Sbjct: 264 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 323

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E GI   + T+  ++  +  FG    A+ +++ M E  R++   +   +    +S  EG 
Sbjct: 324 EKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE--REINPDVLTFNALISASVKEGK 381

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++ +++L   I         P T   NS IY     G+    R  D   M   M 
Sbjct: 382 LFEAEKLCDEMLHRCI--------FPDTVTYNSMIY-----GFCKHNRFDDAKHMFDLM- 427

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                 + PD VT+ T++    +A  +D   Q+L E++R G+ AN  TYN L+ G+C+  
Sbjct: 428 ------ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVD 481

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++ A++L +EM     + PD ++ NIL+ GF   +    AL  F  ++   I    ++Y
Sbjct: 482 NLNAAQDLFQEMISHG-VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAY 540

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++      S+   A  +F   L    V+ D+  +N+++ G+C    + +A  +  +MK
Sbjct: 541 NIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMK 599

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           +NG  P+ +TY +L  G     K GE   + K I+   E++  G + D+     +K  EE
Sbjct: 600 DNGHEPDNSTYNTLIRG---CLKAGE---IDKSIELISEMRSNGFSGDA---FTIKMAEE 650

Query: 481 LLDALAD 487
           ++  ++D
Sbjct: 651 IICRVSD 657



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/506 (23%), Positives = 219/506 (43%), Gaps = 90/506 (17%)

Query: 55  KPDTAAYNAVLN----------ACANLGK--PKKFLQ---LFDQMHEFGAKPDVLTYNVM 99
           +PD   +N +L+          A A  G      FL+   LFDQM E G  P V+T+N +
Sbjct: 173 QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTL 232

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
           I       R      ++ +++  G+ + + T+ ++V      GD + A  ++  M E   
Sbjct: 233 INGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 292

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
               +I    ++      +G   D   +F ++L   I             APN   Y  +
Sbjct: 293 KPDVVIYSAIIDRLCK--DGHHSDAQYLFSEMLEKGI-------------APNVFTYNCM 337

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G+ + GR SD  R+L  M  +E N   PD +T+  ++SA VK G +  A ++  EM  
Sbjct: 338 IDGFCSFGRWSDAQRLLRDMIEREIN---PDVLTFNALISASVKEGKLFEAEKLCDEMLH 394

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID--------- 330
             +  + +TYN ++ G+C+  + D AK +   MA      PDVV++N +ID         
Sbjct: 395 RCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-----SPDVVTFNTIIDVYCRAKRVD 449

Query: 331 --------------------------GFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
                                     GF  +D+   A   F EM + G+ P  I+   L+
Sbjct: 450 EGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 509

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             F  + + + A ++F E+++  ++ +D VA+N+++ G C+   V+EA  +   +  +G 
Sbjct: 510 YGFCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 568

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            P+V TY  + +G        +A +L+ ++K+                   +PD    + 
Sbjct: 569 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGH----------------EPDNSTYNT 612

Query: 485 LADICVRAAFFRKALEIVACMEEHGI 510
           L   C++A    K++E+++ M  +G 
Sbjct: 613 LIRGCLKAGEIDKSIELISEMRSNGF 638



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 122/297 (41%), Gaps = 33/297 (11%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           ++  ++        +  +     ++T++G   + +T+N LL G C + +I +A  L   M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 313 ADDAKIE--------------PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
            +   +E              P V+++N LI+G  L      A    N+M  +G+    +
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVV 262

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y T++         K A  +  +M  +  +K D+V ++ +++  C+ G   +A+ +   
Sbjct: 263 TYGTIVNGMCKMGDTKSALNLLSKM-EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSE 321

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M E G  PNV TY  + +G     +  +A  L +++ ER                 + PD
Sbjct: 322 MLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIER----------------EINPD 365

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM--HSRMFTSKH 533
               +AL    V+     +A ++   M    I P+   Y  +      H+R   +KH
Sbjct: 366 VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 422



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 38/261 (14%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           V+   V+    D A  +  +M    +P N  ++NIL+K +C   ++  +     ++    
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT-KL 170

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
             +PDVV++N L+ G  L D  + AL  F  M   G           ++A AL       
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG----------FLEAVAL------- 213

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
              FD+M+      V ++ +N L+ G C  G V EA  ++ +M   G + +V TYG++ N
Sbjct: 214 ---FDQMVEIGLTPV-VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+        AL L  +++E                  +KPD  +  A+ D   +     
Sbjct: 270 GMCKMGDTKSALNLLSKMEE----------------THIKPDVVIYSAIIDRLCKDGHHS 313

Query: 497 KALEIVACMEEHGIPPNKTKY 517
            A  + + M E GI PN   Y
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTY 334



 Score = 45.4 bits (106), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A+ FF+ M       T +    ++  F   ++P +A  ++ +M    R+ ++I ++N+L+
Sbjct: 90  AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKM-EIRRIPLNIYSFNILI 148

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + +C    +  +     ++ + GF P+V T+ +L +G+ L  +  EAL L+  + E
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVE 204


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 188/394 (47%), Gaps = 29/394 (7%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE-----FGAKPDVLTYNVMIKLCARAS 107
           D +P+   +  ++N      +  + L++F++M+      F  +PDV+TYN +I    +  
Sbjct: 335 DIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVG 394

Query: 108 RKHLLVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
           R+   + ++ER+       CM    T+  L+  Y     +E A  +   M   +  V   
Sbjct: 395 RQEEGLGLVERMRSQ--PRCMPNTVTYNCLIDGYCKASMIEAARELFDQM--NKDGVPPN 450

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           +  L+         G  +   E F ++               K    N+  YT L++ + 
Sbjct: 451 VVTLNTLVDGMCKHGRINGAVEFFNEMQG-------------KGLKGNAVTYTALIRAFC 497

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           N   +   + +   M    +    PD + Y T++S L +AG +DRA  VL++M   G   
Sbjct: 498 NVNNIEKAMELFDEML---EAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSP 554

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           + +++N+L+ G+C++ ++D+A E+L+EM ++A I+PD V+YN LI  F    D + A   
Sbjct: 555 DIVSFNVLINGFCRKNKLDEAYEMLKEM-ENAGIKPDGVTYNTLISHFSKTGDFSTAHRL 613

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
             +M   G+ PT ++Y  L+ A+ L+     A K+F +M    +V  + V +N+L+   C
Sbjct: 614 MKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLC 673

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           R   V+ A  +++ MK  G  PN  T+ ++  G+
Sbjct: 674 RKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGL 707



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 135/262 (51%), Gaps = 6/262 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA--SHPDHVTYTTVVSALVKAGSMD 268
           PN   +  L+       RV + + +   M   E N     PD +TY T++  L K G  +
Sbjct: 338 PNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQE 397

Query: 269 RARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
               ++  M ++     N +TYN L+ GYC+   I+ A+EL  +M  D  + P+VV+ N 
Sbjct: 398 EGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDG-VPPNVVTLNT 456

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+DG        GA+ FFNEM+ +G+    ++YT L++AF   +  + A ++FDEML + 
Sbjct: 457 LVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEML-EA 515

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               D + +  L+ G  + G ++ A  ++ +MKE GF P++ ++  L NG     K  EA
Sbjct: 516 GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEA 575

Query: 448 LLLWKEIKERCEVKKEGVNADS 469
             + KE+ E   +K +GV  ++
Sbjct: 576 YEMLKEM-ENAGIKPDGVTYNT 596



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 172/386 (44%), Gaps = 62/386 (16%)

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           D+  EVFEK+     N       L +   P+   Y TL+ G    GR  + + ++  MR 
Sbjct: 357 DEALEVFEKM-----NGGESNGFLVE---PDVITYNTLIDGLCKVGRQEEGLGLVERMRS 408

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q      P+ VTY  ++    KA  ++ AR++  +M + GVP N +T N L+ G C+  +
Sbjct: 409 QP--RCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGR 466

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           I+ A E   EM     ++ + V+Y  LI  F  +++   A+  F+EM   G +P  I Y 
Sbjct: 467 INGAVEFFNEMQGKG-LKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYY 525

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA--------- 412
           TL+   + + +   A+ V  +M ++     DIV++N+L+ G+CR   ++EA         
Sbjct: 526 TLISGLSQAGKLDRASFVLSKM-KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMEN 584

Query: 413 --------------------------KRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
                                      R++++M + G  P V TYG+L +   L     E
Sbjct: 585 AGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDE 644

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A+ +++++           ++ S +P    P+  + + L +   R      AL ++  M+
Sbjct: 645 AMKIFRDM-----------SSTSKVP----PNTVIYNILINSLCRKNQVDLALSLMDDMK 689

Query: 507 EHGIPPNKTKYKKIYVEMHSRMFTSK 532
             G+ PN   +  ++  +  + + SK
Sbjct: 690 VKGVKPNTNTFNAMFKGLQEKNWLSK 715



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 181/416 (43%), Gaps = 33/416 (7%)

Query: 4   SGYL--PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           +G+L  P V  ++T++  L   G     E + L    V+R+R  S P  +    P+T  Y
Sbjct: 372 NGFLVEPDVITYNTLIDGLCKVGRQE--EGLGL----VERMR--SQPRCM----PNTVTY 419

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N +++        +   +LFDQM++ G  P+V+T N ++    +  R +  V     +  
Sbjct: 420 NCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQG 479

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+     T+ +L+ A+    ++E A  +   M E       I+    +   S    G  
Sbjct: 480 KGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQ--AGKL 537

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           D    V  K+                 F+P+   +  L+ G+  + ++ +   ML  M  
Sbjct: 538 DRASFVLSKMKEAG-------------FSPDIVSFNVLINGFCRKNKLDEAYEMLKEM-- 582

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            E+    PD VTY T++S   K G    A +++ +M + G+    +TY  L+  YC    
Sbjct: 583 -ENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGN 641

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +D+A ++ R+M+  +K+ P+ V YNILI+     +    AL+  ++M+ +G+ P   ++ 
Sbjct: 642 LDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFN 701

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            + K     +    A ++ D M  +     D +   +L E    +G   + K  ++
Sbjct: 702 AMFKGLQEKNWLSKAFELMDRM-TEHACNPDYITMEILTEWLSAVGETAKLKSFVQ 756



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 28/324 (8%)

Query: 204 LLPKT-FAPNSR----IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
           L PK  F PNS     +++ L K     GR  D   ++G + +  ++   P+ +  T ++
Sbjct: 219 LQPKAEFPPNSNTGHIVFSALSK-RDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLI 277

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           S L ++G  DRA  VL  + ++G      + N LL    +  +  +   LL EM  +  I
Sbjct: 278 SRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEM-KEMDI 336

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMR---ARG--IAPTKISYTTLMKAFALSSQP 373
           +P+VV++ ILI+          AL  F +M    + G  + P  I+Y TL+       + 
Sbjct: 337 QPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQ 396

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           +    + + M   PR   + V +N L++GYC+  ++E A+ + ++M ++G  PNV T  +
Sbjct: 397 EEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNT 456

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L +G+    +   A+  + E++ +                 LK +     AL        
Sbjct: 457 LVDGMCKHGRINGAVEFFNEMQGK----------------GLKGNAVTYTALIRAFCNVN 500

Query: 494 FFRKALEIVACMEEHGIPPNKTKY 517
              KA+E+   M E G  P+   Y
Sbjct: 501 NIEKAMELFDEMLEAGCSPDAIVY 524


>gi|449434724|ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g69290-like [Cucumis sativus]
 gi|449517162|ref|XP_004165615.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g69290-like [Cucumis sativus]
          Length = 656

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 170/347 (48%), Gaps = 20/347 (5%)

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
           + Y  ++KG++  G + +   ++   +  E +++    + +  +++A V  G +D+A+ +
Sbjct: 326 KTYLEMVKGFIQSGNLKELSALIIDAQNLESSSAVDGSIGFG-IINACVNIGWLDKAQYI 384

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM   GV      Y  +LK Y ++ +   A +L+ +++    I+ D  +Y+ LI+  +
Sbjct: 385 LDEMNSQGVSLGLGVYLPILKAYRKEHRTAAATQLIMDISSSG-IQLDAENYDALIEASM 443

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
              D   A T F  MR    + TK SY T+M     + +P+L     DE++ DP V+V  
Sbjct: 444 SNQDFQSAFTLFRSMRETRKSDTKASYLTIMTGLMENHRPELMAAFLDEIVEDPLVEVGT 503

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             WN ++  +C+ G +E+A+R   RMK   F PN  T+ SL NG   A +    L+LW E
Sbjct: 504 HDWNSIIHAFCKAGRLEDARRTYRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNE 563

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +K +     E           +K D  L+DA     V+  FF   +++V   ++  I  +
Sbjct: 564 LKWKVTPNGES---------GIKLDNNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFID 614

Query: 514 KTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAE--AFKFWLGL 558
           K KYK+ ++E H ++  +K        RRR  K+     AFK W GL
Sbjct: 615 KWKYKQAFMETHKKLKVAKL-------RRRNYKKMESLIAFKNWAGL 654



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 25/220 (11%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           ++ S S  D +    ++NAC N+G   K   + D+M+  G    +  Y  ++K   +  R
Sbjct: 353 NLESSSAVDGSIGFGIINACVNIGWLDKAQYILDEMNSQGVSLGLGVYLPILKAYRKEHR 412

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK----I 164
                 ++  I   GI L    + +L+ A +   D + A T+ ++MRE R+   K     
Sbjct: 413 TAAATQLIMDISSSGIQLDAENYDALIEASMSNQDFQSAFTLFRSMRETRKSDTKASYLT 472

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           I    +E++  E              L+   ++   E PL+       +  + +++  + 
Sbjct: 473 IMTGLMENHRPE--------------LMAAFLDEIVEDPLVE----VGTHDWNSIIHAFC 514

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
             GR+ D  R     RR +     P+  T+ ++++  V A
Sbjct: 515 KAGRLEDARR---TYRRMKFLQFEPNEQTFLSLINGYVSA 551


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 179/387 (46%), Gaps = 24/387 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           + DT  YN +LN      K K    ++ +M E G KPDV+T+N ++K   RA +    V 
Sbjct: 147 QADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVL 206

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +LE +   G+    TTF +L+  +V  G ++ A  +   M E      K+   + +  Y 
Sbjct: 207 MLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYC 266

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  +D     ++ + N              F P+   Y T + G    G V   ++
Sbjct: 267 K--LGRVEDALGYIQQEIANG-------------FEPDQITYNTFVNGLCQNGHVGHALK 311

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M ++      PD  TY  VV+ L K G ++ A+ +L +M   G   +  T+N L+ 
Sbjct: 312 VMDVMVQE---GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIV 368

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C   ++++A +L R++     + PDV ++NILI+    + D   AL  F EM++ G  
Sbjct: 369 ALCSGNRLEEALDLARQVTLKG-LSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCT 427

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD--PRVKVDIVAWNMLVEGYCRMGLVEEA 412
           P +++Y TL+       +   A  +  EM     PR     V +N +++G C+   +EEA
Sbjct: 428 PDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPR---STVTYNTIIDGLCKKMRIEEA 484

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + + ++M   G   N  T+ +L +G+ 
Sbjct: 485 EEVFDQMDLQGISRNAITFNTLIDGLC 511



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 203/441 (46%), Gaps = 40/441 (9%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           + +G+ P    ++T V+ L  +G  G   ++K+ DV+V+   +  DPD+ +        Y
Sbjct: 282 IANGFEPDQITYNTFVNGLCQNGHVG--HALKVMDVMVQ---EGHDPDVFT--------Y 328

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N V+N     G+ ++   + +QM E G  PD+ T+N +I      +R    + +  ++  
Sbjct: 329 NIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTL 388

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G++  + TF  L+ A    GD ++A  + + M+       ++     +++  S  +   
Sbjct: 389 KGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGK--- 445

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMR 240
                     L  +++   E   +     P S + Y T++ G   + R+ +   +   M 
Sbjct: 446 ----------LGKALDLLKE---MESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMD 492

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            Q       + +T+ T++  L K   +D A Q++++M   G+  N ITYN +L  YC+Q 
Sbjct: 493 LQ---GISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQG 549

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            I KA ++L+ M  +   E DVV+Y  LI+G      +  AL     MR +G+  T  +Y
Sbjct: 550 DIKKAADILQTMTANG-FEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAY 608

Query: 361 TTLMKAFALSSQPKLANKVFDEM--LRDPRVKVDIVAWNMLVEGYCR-MGLVEEAKRIIE 417
             ++++    +  + A  +F EM  + +P    D   + ++  G CR  G + EA   + 
Sbjct: 609 NPVIQSLFRRNNTRDAMNLFREMTEVGEPP---DAFTYKIVFRGLCRGGGSIREAFDFLL 665

Query: 418 RMKENGFYPNVATYGSLANGI 438
            M + GF P  +++  LA G+
Sbjct: 666 EMVDKGFIPEFSSFRMLAEGL 686



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 195/441 (44%), Gaps = 50/441 (11%)

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           FG + D + YN ++ +    S+  LL  V   + E GI   + TF +L+ A      L  
Sbjct: 144 FGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKA------LCR 197

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS------ 200
           A  +  A+             L LE+ SS        D+  F  L+   +   S      
Sbjct: 198 AHQVRTAV-------------LMLEEMSSSGVA---PDETTFTTLMQGFVEEGSIKAALR 241

Query: 201 -EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
            +  +L    +P       L+ GY   GRV D    LG ++++  N   PD +TY T V+
Sbjct: 242 VKARMLEMGCSPTKVTVNVLINGYCKLGRVEDA---LGYIQQEIANGFEPDQITYNTFVN 298

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L + G +  A +V+  M + G   +  TYNI++   C+  Q+++AK +L +M +   + 
Sbjct: 299 GLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCL- 357

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD+ ++N LI      +    AL    ++  +G++P   ++  L+ A      P+LA ++
Sbjct: 358 PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRL 417

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F+EM +      D V +N L++  C +G + +A  +++ M+  G   +  TY ++ +G+ 
Sbjct: 418 FEEM-KSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLC 476

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
              +  EA    +E+ ++ +++    NA +             + L D   +      A 
Sbjct: 477 KKMRIEEA----EEVFDQMDLQGISRNAIT------------FNTLIDGLCKDKRIDDAN 520

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
           ++++ M   G+ PN   Y  I
Sbjct: 521 QLISQMISEGLQPNNITYNSI 541



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 173/400 (43%), Gaps = 38/400 (9%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           +I +  +PD   YN  +N     G     L++ D M + G  PDV TYN+++    +  +
Sbjct: 281 EIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 340

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 +L +++E G    +TTF +L+ A      LE              +   + R++
Sbjct: 341 LEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLE--------------EALDLARQV 386

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
            L+  S          D     +L N++    +P L  + F         P+   Y TL+
Sbjct: 387 TLKGLSP---------DVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLI 437

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
               + G++   + +L  M    ++A  P   VTY T++  L K   ++ A +V  +M  
Sbjct: 438 DNLCSLGKLGKALDLLKEM----ESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDL 493

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G+  N IT+N L+ G C+  +ID A +L+ +M  +  ++P+ ++YN ++  +    D  
Sbjct: 494 QGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEG-LQPNNITYNSILTHYCKQGDIK 552

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A      M A G     ++Y TL+     + + ++A K+   M R   ++    A+N +
Sbjct: 553 KAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGM-RIKGMRATPKAYNPV 611

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           ++   R     +A  +   M E G  P+  TY  +  G+ 
Sbjct: 612 IQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLC 651



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 30/337 (8%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS-- 266
           FAP   +Y  +++        +D +++L    R+E       H     VV + +++ +  
Sbjct: 73  FAPGPEVYEEIIRKLGAAAGAADLMKVLVTEMRREG------HQVRVGVVHSFLESYARQ 126

Query: 267 ---MDRARQVLAEMTRI-GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
              +D    VL ++  + G+ A+ + YN LL    +  ++   + +  EM +   I+PDV
Sbjct: 127 QLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERG-IKPDV 185

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           V++N L+           A+    EM + G+AP + ++TTLM+ F      K A +V   
Sbjct: 186 VTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKAR 245

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           ML +       V  N+L+ GYC++G VE+A   I++   NGF P+  TY +  NG+    
Sbjct: 246 ML-EMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNG 304

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
             G AL          +V    V    D      PD    + + +   +     +A  I+
Sbjct: 305 HVGHAL----------KVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGIL 348

Query: 503 ACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
             M E G  P+ T +  + V + S     +    ARQ
Sbjct: 349 NQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQ 385



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 142/357 (39%), Gaps = 44/357 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD--------------DGPVESVKLFDVVVKRVRKFS 46
           M+  G LP +  ++T++  L  SG+               G    V  F++++  + K  
Sbjct: 351 MVERGCLPDITTFNTLIVALC-SGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVG 409

Query: 47  DPDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           DP +          S   PD   YN +++   +LGK  K L L  +M   G     +TYN
Sbjct: 410 DPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYN 469

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I    +  R      V +++   GI+    TF +L+        ++ A  ++  M   
Sbjct: 470 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISE 529

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                 I     L  Y  +  GD     ++ + +  N              F  +   Y 
Sbjct: 530 GLQPNNITYNSILTHYCKQ--GDIKKAADILQTMTANG-------------FEVDVVTYG 574

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TL+ G    GR    +++L  MR +   A+      Y  V+ +L +  +   A  +  EM
Sbjct: 575 TLINGLCKAGRTQVALKLLRGMRIKGMRATPK---AYNPVIQSLFRRNNTRDAMNLFREM 631

Query: 278 TRIGVPANRITYNILLKGYCQ-QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           T +G P +  TY I+ +G C+    I +A + L EM D   I P+  S+ +L +G +
Sbjct: 632 TEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFI-PEFSSFRMLAEGLL 687


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 209/434 (48%), Gaps = 33/434 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ GY P    ++T+++ L        +ES K+ + VV   R   +       +P+   
Sbjct: 126 VMKLGYEPDTTTFNTLINGLC-------LES-KVSEAVVLVARMVENG-----CQPNVVT 172

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++N     G     L L  +M E   K DV TY+ +I    R       + + + + 
Sbjct: 173 YNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME 232

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+ SLV      G       +++ M   R+ +  +I    L D   + EG 
Sbjct: 233 TKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTS-RKIIPNVITFNVLIDVFVK-EGK 290

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +E++++++   I             +PN+  Y +LM GY  + R+S+   ML  M 
Sbjct: 291 LQEANELYKEMITKGI-------------SPNTITYNSLMDGYCMQNRLSEANNMLDLMV 337

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N   PD VT+T+++    K   +D   ++  ++++ G+ AN +TY+IL++G+CQ  
Sbjct: 338 R---NNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSG 394

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ A+EL +EM     + PDV++Y IL+DG         AL  F +++   +    + Y
Sbjct: 395 KLEIAEELFQEMV-SLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMY 453

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T +++      + + A  +F   L    VK +++ + +++ G C+ G + EA  ++ +M+
Sbjct: 454 TIIIEGMCKGGKVEDAWNLFCS-LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 512

Query: 421 ENGFYPNVATYGSL 434
           E+G  PN  TY +L
Sbjct: 513 EDGNEPNDCTYNTL 526



 Score = 42.0 bits (97), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 341 ALTFFNEM-RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
           A+  F EM R+R + P+ + ++      A + Q  L      +M  +  +  +I   N++
Sbjct: 49  AIDLFQEMIRSRPL-PSLVDFSRFFSGVASTKQFNLVLDFCKKMELNG-IAHNIYTLNIM 106

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           +  +CR      A  ++ ++ + G+ P+  T+ +L NG+ L  K  EA++L   + E
Sbjct: 107 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE 163


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 187/401 (46%), Gaps = 20/401 (4%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +YN VLN     G   K    + +M + G  PDV+TY+ +I    +A      +
Sbjct: 197 SPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +++ G+     T+ S++  Y   G  + A   ++ MR    +   ++    L +Y
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP-NVVTYSSLMNY 315

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +N G   +  ++F+ +               +   P+   Y TL++GY  +G + +  
Sbjct: 316 LCKN-GRSTEARKIFDSMTK-------------RGLEPDIATYRTLLQGYATKGALVEMH 361

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M R   N   PDH  +  ++ A  K   +D+A  V ++M + G+  N + Y  ++
Sbjct: 362 ALLDLMVR---NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVI 418

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+   +D A     +M D+  + P+++ Y  LI G    D    A     EM  RGI
Sbjct: 419 DVLCKSGSVDDAMLYFEQMIDEG-LTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGI 477

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               I + +++ +     +   + K+FD M+R   VK DI+ +N L++G C  G ++EA 
Sbjct: 478 CLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEAT 536

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++  M   G  P++ TYG+L NG     +  +AL L+KE+
Sbjct: 537 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEM 577



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 216/505 (42%), Gaps = 75/505 (14%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P V TY ++I  C RA R  L    L  +++ G  +   T
Sbjct: 70  PAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAIT 129

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG--DDDDDDEVF 188
           F  L+       D   ++ +   +R      C      D+  Y++  +G  D++   E  
Sbjct: 130 FTPLLKGLCA--DKRTSDAMDIVLRRMTELGCIP----DVFSYNNLLKGLCDENRSQEAL 183

Query: 189 EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
           E L   + +     P       P+   Y T++ G+  EG   D+ +         D    
Sbjct: 184 ELLHMMADDRGGGSP-------PDVVSYNTVLNGFFKEG---DSDKAYSTYHEMLDRGIL 233

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD VTY+++++AL KA +MD+A +VL  M + GV  + +TYN +L GYC   Q  +A   
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L++M  D  +EP+VV+Y+ L++       S  A   F+ M  RG+ P   +Y TL++ +A
Sbjct: 294 LKKMRSDG-VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYA 352

Query: 369 LSSQPKLANKVFDEMLRD-----------------PRVKVD-----------------IV 394
                   + + D M+R+                  + KVD                 +V
Sbjct: 353 TKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVV 412

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +  +++  C+ G V++A    E+M + G  PN+  Y SL +G+    K  +A  L  E+
Sbjct: 413 CYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM 472

Query: 455 KER--C-----------EVKKEGVNADSD------LPPPLKPDEELLDALADICVRAAFF 495
            +R  C              KEG   +S+      +   +KPD    + L D C  A   
Sbjct: 473 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            +A +++A M   G+ P+   Y  +
Sbjct: 533 DEATKLLASMVSVGVKPDIVTYGTL 557



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/467 (22%), Positives = 211/467 (45%), Gaps = 56/467 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-KPDTA 59
           M+++G +P    +++++    +SG   P E++      +K++R        SD  +P+  
Sbjct: 262 MVKNGVMPDCMTYNSILHGYCSSGQ--PKEAIG----TLKKMR--------SDGVEPNVV 307

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y++++N     G+  +  ++FD M + G +PD+ TY  +++  A       +  +L+ +
Sbjct: 308 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD---VC--KIIRELDLEDYS 174
           +  GI      F  L+ AY     ++ A  +   MR+   +   VC   +I  L      
Sbjct: 368 VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL------ 421

Query: 175 SENEGDDDDDDEVFEKLLPNSINPS-------------------SEP---PLLPKTFAPN 212
               G  DD    FE+++   + P+                   +E     +L +    N
Sbjct: 422 -CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLN 480

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           +  + +++  +  EGRV ++ ++   M R       PD +TY T++     AG MD A +
Sbjct: 481 TIFFNSIIDSHCKEGRVIESEKLFDLMVRI---GVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +LA M  +GV  + +TY  L+ GYC+  ++D A  L +EM     + P++++YNI++ G 
Sbjct: 538 LLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGL 596

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKV 391
                +A A   +  +   G      +Y  ++     ++    A ++F  + L D  +++
Sbjct: 597 FHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD--LQL 654

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +   +N+++    + G ++EAK +      NG  P+V TY  +A  +
Sbjct: 655 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 701



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 207/456 (45%), Gaps = 37/456 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G LP V  +S++++ L  A   D  +E   + + +VK           +   PD  
Sbjct: 227 MLDRGILPDVVTYSSIIAALCKAQAMDKAME---VLNTMVK-----------NGVMPDCM 272

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++L+   + G+PK+ +    +M   G +P+V+TY+ ++    +  R      + + +
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENE 178
            + G+   + T+++L+  Y   G L     ++  M R G +    +   L +  Y+ + +
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL-ICAYAKQEK 391

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
              D    VF K+  + +NP             N   Y T++      G V D +     
Sbjct: 392 --VDQAMLVFSKMRQHGLNP-------------NVVCYGTVIDVLCKSGSVDDAMLYFEQ 436

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    D    P+ + YT+++  L      D+A +++ EM   G+  N I +N ++  +C+
Sbjct: 437 MI---DEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK 493

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++ ++++L   M     ++PD+++YN LIDG  L      A      M + G+ P  +
Sbjct: 494 EGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y TL+  +   S+   A  +F EM+    V  +I+ +N++++G         AK +   
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGLFHTRRTAAAKELYVS 611

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           + ++G    ++TY  + +G+       EAL +++ +
Sbjct: 612 ITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 647


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 209/462 (45%), Gaps = 35/462 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   + N++LN     G+      ++ QM   G  PDV   ++M+    +  +       
Sbjct: 189 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 248

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++++  +G+   + T+ SL+  YV  GD+E A+ +++ M E       +   L ++ Y  
Sbjct: 249 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + + D+       EK+L      ++          P+ R Y  L+ GY   G++ D VR+
Sbjct: 309 QCKMDEA------EKVLRGMQEEAA--------LVPDERAYGVLIDGYCRTGKIDDAVRL 354

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M R        +     ++++   K G +  A  V+  M    +  +  +YN LL G
Sbjct: 355 LDEMLRL---GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 411

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++    +A  L  +M  +  IEP V++YN L+ G   +     AL  ++ M  RG+AP
Sbjct: 412 YCREGHTSEAFNLCDKMLQEG-IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAP 470

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            ++ Y+TL+         + A+ ++ ++L     K  I  +N ++ G C+MG + EA+ I
Sbjct: 471 DEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEI 529

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            ++MK+ G  P+  TY +L +G   A   G+A       K +  +++E          P+
Sbjct: 530 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF------KVKGAMERE----------PI 573

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            P  E+ ++L     ++    +  +++  M   G+ PN   Y
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTY 615



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 181/414 (43%), Gaps = 61/414 (14%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS------------ 107
            +N +++    +GK  +  ++FD+M + G  PD +TY  +I    +AS            
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 568

Query: 108 --------------------RKHLLVFVLERILEMGI---TLCMTTFQSLVAAYVGFGDL 144
                               +   LV V + + EMGI   T  + T+ +L+  +   G L
Sbjct: 569 EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
           + A +    M E       II    +        G  D+ + + +K++ +   P  E  L
Sbjct: 629 DKAFSSYFEMTENGLSANIIICSTMVSGLY--RLGRIDEANLLMQKMVDHGFFPDHECFL 686

Query: 205 LP------------------KTFA-PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                               KTF  PN+ +Y   + G    G+V D  R    +  +   
Sbjct: 687 KSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK--- 743

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD+ TY T++     AG++D A ++  EM R G+  N +TYN L+ G C+   +D+A
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRA 803

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           + L  ++     + P+VV+YN LIDG+  I +   A    ++M   GI+P+ ++Y+ L+ 
Sbjct: 804 QRLFHKLHQKG-LFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALIN 862

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
                   + + K+ ++M++   V   ++ +  LV+GY R G +++  ++ + M
Sbjct: 863 GLCKHGDIERSMKLLNQMIK-AGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMM 915



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 189/486 (38%), Gaps = 120/486 (24%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR------ 108
           KPD+ +YN +L+     G   +   L D+M + G +P VLTYN ++K   R         
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 458

Query: 109 -KHLL------------------VFVLER----------ILEMGITLCMTTFQSLVAAYV 139
             HL+                  +F +E           IL  G T    TF ++++   
Sbjct: 459 IWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 518

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS-SENEGDDDDDDEVFEKLLPNSINP 198
             G +  AE I   M++       I     ++ Y  + N G         E+        
Sbjct: 519 KMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-------- 570

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
             EP       +P+  +Y +L+ G     R+ +   +L  M  +      P+ VTY  ++
Sbjct: 571 --EP------ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIR---GLTPNIVTYGALI 619

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD--- 315
               K G +D+A     EMT  G+ AN I  + ++ G  +  +ID+A  L+++M D    
Sbjct: 620 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 679

Query: 316 -------------AKIE---------------PDVVSYNILIDGFILIDDSAGALTFFNE 347
                        A I+               P+ + YNI I G         A  FF+ 
Sbjct: 680 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSM 739

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV-----------------K 390
           +  +G  P   +Y TL+  ++ +     A ++ DEMLR   V                  
Sbjct: 740 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSEN 799

Query: 391 VD-----------------IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           VD                 +V +N L++GYC++G ++ A ++ ++M E G  P+V TY +
Sbjct: 800 VDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSA 859

Query: 434 LANGIS 439
           L NG+ 
Sbjct: 860 LINGLC 865



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 111/491 (22%), Positives = 207/491 (42%), Gaps = 71/491 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G +P V   S +V+   A   DG V+    F      V+K  +  +    +P+   
Sbjct: 217 MIRVGIVPDVFMVSIMVN---AFCKDGKVDEAAGF------VKKMENLGV----EPNIVT 263

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC---------------- 103
           Y++++N   +LG  +    +   M E G   +V+TY ++IK  C                
Sbjct: 264 YHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQ 323

Query: 104 -------------------ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
                               R  +    V +L+ +L +G+   +    SL+  Y   G++
Sbjct: 324 EEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEI 383

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
             AE ++  M +             L+ Y    EG   +   + +K+L   I    EP +
Sbjct: 384 HEAEGVITRMVDWNLKPDSYSYNTLLDGYC--REGHTSEAFNLCDKMLQEGI----EPTV 437

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           L          Y TL+KG    G   D +++   M ++      PD V Y+T++  L K 
Sbjct: 438 LT---------YNTLLKGLCRVGAFDDALQIWHLMMKR---GVAPDEVGYSTLLDGLFKM 485

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
            + + A  +  ++   G   +RIT+N ++ G C+  ++ +A+E+  +M  D    PD ++
Sbjct: 486 ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSPDGIT 544

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM- 383
           Y  LIDG+    +   A      M    I+P+   Y +L+     S +      +  EM 
Sbjct: 545 YRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMG 604

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +R   +  +IV +  L++G+C+ G++++A      M ENG   N+    ++ +G+    +
Sbjct: 605 IRG--LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGR 662

Query: 444 PGEALLLWKEI 454
             EA LL +++
Sbjct: 663 IDEANLLMQKM 673



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P    + T++   +A+G+    E+ +L D +++R              P+   YNA+
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVD--EAFRLRDEMLRR-----------GLVPNIVTYNAL 790

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N         +  +LF ++H+ G  P+V+TYN +I    +         + ++++E GI
Sbjct: 791 INGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGI 850

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +  + T+ +L+      GD+E +  ++  M
Sbjct: 851 SPSVVTYSALINGLCKHGDIERSMKLLNQM 880



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 15/156 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G +P++  ++ +++ L  S +             V R ++           P+   
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSEN-------------VDRAQRLFHKLHQKGLFPNVVT 821

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN +++    +G      +L D+M E G  P V+TY+ +I  LC     +  +  +L ++
Sbjct: 822 YNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMK-LLNQM 880

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           ++ G+   +  + +LV  Y+  G+++    +   M 
Sbjct: 881 IKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMH 916


>gi|15221572|ref|NP_177062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333630|sp|Q9CAA5.1|PP109_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g68980, mitochondrial; Flags: Precursor
 gi|12323218|gb|AAG51590.1|AC011665_11 unknown protein [Arabidopsis thaliana]
 gi|110740675|dbj|BAE98440.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196751|gb|AEE34872.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 214/503 (42%), Gaps = 74/503 (14%)

Query: 55  KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A NA L AC   +        L + M   G KPD L++  +  L AR   +  + 
Sbjct: 184 KPDLVASNAALEACCRQMESLADAENLIESMDVLGVKPDELSFGFLAYLYARKGLREKIS 243

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            + + +  +G       + S+++ YV  GDL+ A  ++         +C +    +   +
Sbjct: 244 ELEDLMDGLGFASRRILYSSMISGYVKSGDLDSASDVI---------LCSLKGVGEASSF 294

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S E                                       Y  L++G++    V    
Sbjct: 295 SEET--------------------------------------YCELVRGFIESKSVESLA 316

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +++   ++ E  ++         +V+A VK G     + +L E+   G       Y  +L
Sbjct: 317 KLIIEAQKLESMSTDVGGSVGFGIVNACVKLGF--SGKSILDELNAQGGSGGIGVYVPIL 374

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           K YC++ +  +A +L+ E++    ++ DV +YN +I+  +   D   ALT F +MR   +
Sbjct: 375 KAYCKEGRTSEATQLVTEISSSG-LQLDVETYNTMIEASMTKHDFLSALTLFRDMRETRV 433

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           A  K  Y T+M     + +P+L  +  +E++ DPRV+V    WN ++  +C+ G + +AK
Sbjct: 434 ADLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSIIHAFCKSGRLGDAK 493

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
               RM    + PN  TY SL NG     K  E +++WKE K++                
Sbjct: 494 STFRRMTFLQYEPNNQTYLSLINGYVSCEKYFEVVVIWKEFKDK---------------- 537

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
             K +  L DA  +  V+  FF  AL+++   +E  I  +K +YK  ++E      T K+
Sbjct: 538 KAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFME------TQKN 591

Query: 534 ASQARQDRRRERK-RAAEAFKFW 555
               +  +R+ +K    +AFK W
Sbjct: 592 LRLPKLRKRKMKKIEFLDAFKNW 614


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 212/456 (46%), Gaps = 34/456 (7%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V A++ ++  L  SG+    E  +L  V  K V+K          + D  AYN ++  
Sbjct: 63  PTVHAFTKLIDILVNSGE---FERAEL--VYKKLVQK--------GCQLDRFAYNVLIRY 109

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
               G+    +++F +M   G++PD  TY  ++    +A R        + +LE G+T  
Sbjct: 110 FGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPN 169

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
           + T+  L+ A+   G L++A  +   M+        +   + L+   S   G      ++
Sbjct: 170 IPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSA--GRVGAARKL 227

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F K+  +               +P+S  Y+TL+ G    GRV +  ++    R   D   
Sbjct: 228 FHKMTGDGC-------------SPDSYTYSTLVNGLGKSGRVEEAHKVF---REMVDRGV 271

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
             D V Y ++++ L KAG+MDR  +++ EM+R G   +  ++N ++    +  + D A+E
Sbjct: 272 AVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAARE 331

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +   M +    +PD++SYNILID +    D+A A     EM   G  P   +Y +L+   
Sbjct: 332 VFARMVESG-CKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWL 390

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
           A   Q   A  V +EM      + D+V +N L++   + G  + A R+ ++MK+ G  P+
Sbjct: 391 ATDGQVDEAFAVLEEM-ETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPD 449

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKE-RCEVKK 462
             +Y    +G++   +  EAL+L+K++K   C V K
Sbjct: 450 TLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDK 485



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 196/462 (42%), Gaps = 52/462 (11%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++ A     K      LF+Q   F   P V  +  +I +   +        V +++++ G
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
             L    +  L+  +   G L+ A               ++ RE+ ++           +
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSA--------------MEMFREMKIKG---------SE 132

Query: 184 DDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            DE     L N++  +            +L +   PN   Y  LM  +   G++   + +
Sbjct: 133 PDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGL 192

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M+R+      P  VTY  ++ AL  AG +  AR++  +MT  G   +  TY+ L+ G
Sbjct: 193 FAEMKRR---GFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNG 249

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +  ++++A ++ REM D   +  D+V+YN L+       +         EM  +G  P
Sbjct: 250 LGKSGRVEEAHKVFREMVDRG-VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHP 308

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              S+ T+M A   +++P  A +VF  M+ +   K D++++N+L++ Y R G   +A+++
Sbjct: 309 DAFSFNTIMDALGKANKPDAAREVFARMV-ESGCKPDLISYNILIDSYARFGDAAQARQM 367

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +E M E GF P   TY SL + ++   +  EA  + +E++                    
Sbjct: 368 LEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEME----------------TAGC 411

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           +PD    + L D+  +    ++A  +   M++ G+ P+   Y
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSY 453



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            TL+K     GR + +        + E  A  P    +T ++  LV +G  +RA  V  +
Sbjct: 31  NTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKK 90

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           + + G   +R  YN+L++ + +  Q+D A E+ REM      EPD  +Y  L++      
Sbjct: 91  LVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGS-EPDEYTYGFLVNALGKAG 149

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A +FF+ M  RG+ P   +Y  LM AF    Q  +A  +F EM R    +  +V +
Sbjct: 150 RVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRG-FQPSVVTY 208

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N+L++  C  G V  A+++  +M  +G  P+  TY +L NG+  + +  EA  +++E+ +
Sbjct: 209 NILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVD 268

Query: 457 RCEVKKEGVNADSDLPPPLK--------------------PDEELLDALADICVRAAFFR 496
           R  V  + VN +S L    K                    PD    + + D   +A    
Sbjct: 269 RG-VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPD 327

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
            A E+ A M E G  P+   Y  I ++ ++R      A+QARQ
Sbjct: 328 AAREVFARMVESGCKPDLISY-NILIDSYARF---GDAAQARQ 366



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 164/374 (43%), Gaps = 24/374 (6%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V+  R F D  +     P+   YN +++A   +G+    L LF +M   G +P V+TYN+
Sbjct: 151 VQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNI 210

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           ++     A R      +  ++   G +    T+ +LV      G +E A  + + M +  
Sbjct: 211 LLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVD-- 268

Query: 159 RDVCKIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
           R V      +DL +Y+S         + D V++ +   S           K F P++  +
Sbjct: 269 RGVA-----VDLVNYNSLLATLAKAGNMDRVWKLMKEMS----------RKGFHPDAFSF 313

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            T+M   + +    D  R + A  R  ++   PD ++Y  ++ +  + G   +ARQ+L E
Sbjct: 314 NTIMDA-LGKANKPDAAREVFA--RMVESGCKPDLISYNILIDSYARFGDAAQARQMLEE 370

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G      TYN L+       Q+D+A  +L EM + A   PDVV+YN L+D      
Sbjct: 371 MVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEM-ETAGCRPDVVTYNRLMDMLGKRG 429

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           ++  A   F +M+ +G+ P  +SY   +   A   +   A  +F +M +     VD   +
Sbjct: 430 ENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM-KAVGCPVDKAMY 488

Query: 397 NMLVEGYCRMGLVE 410
            +L+    R G  E
Sbjct: 489 RILIRAAHRAGDTE 502



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 13/146 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G++P  K +++++  LA    DG V+    F V+        +    +  +PD   
Sbjct: 371 MVEAGFIPETKTYNSLIHWLAT---DGQVDEA--FAVL--------EEMETAGCRPDVVT 417

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     G+ ++  +LF QM + G +PD L+Y V I   A   R    + + + + 
Sbjct: 418 YNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMK 477

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEI 146
            +G  +    ++ L+ A    GD E+
Sbjct: 478 AVGCPVDKAMYRILIRAAHRAGDTEL 503



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G+ P   +++T++  L  +  + P  + ++F  +V+           S  KPD  +
Sbjct: 301 MSRKGFHPDAFSFNTIMDALGKA--NKPDAAREVFARMVE-----------SGCKPDLIS 347

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++++ A  G   +  Q+ ++M E G  P+  TYN +I   A   +      VLE + 
Sbjct: 348 YNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEME 407

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
             G    + T+  L+      G+ + A  + Q M++
Sbjct: 408 TAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKD 443


>gi|413934189|gb|AFW68740.1| hypothetical protein ZEAMMB73_971808 [Zea mays]
          Length = 768

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 143/598 (23%), Positives = 265/598 (44%), Gaps = 65/598 (10%)

Query: 8   PHVKAWSTVVSRLAAS------GDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           P V AWS +++ +  +      G D  +E   LF       RK S+  ++S  KP++  +
Sbjct: 188 PPVAAWSAILAHMCQTNTGAFLGADLVMELGYLFQNNRVDPRKKSNRPLLS-MKPNSFTF 246

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N VL A    G  +K  QL + M   G KP+V    VM  +  R  R+   +  L+R ++
Sbjct: 247 NIVLTASLVFGTTRKAEQLLELMPRIGVKPEVNLLIVMAHIYERNGRRDE-IRKLKRHVD 305

Query: 122 MGITLCMTT----FQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----DVCKIIREL--D 169
               L  +     +  L++ ++ FGD + A + ++  +R+G+      +  K + E   +
Sbjct: 306 EAYGLSESEVRQFYDCLLSCHLKFGDFDYAVDMVLDMIRKGKNAKRSLEAAKAVLEAVEN 365

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNS----------------------INPSSEPPLLPK 207
            + Y    + D ++      ++L ++                       +   E   L K
Sbjct: 366 RKFYFPYEKADAENPRSCSSQMLSHASFFKDNSFGRLELDARESVRLLTDKLQEQVGLVK 425

Query: 208 T----FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +      P   +Y  L+K ++   ++S     L     +ED+    +      V++A + 
Sbjct: 426 SEHGILHPTETMYAKLVKAFLEADKISALASFL-VKASKEDSPVSVESSFVVQVINACIS 484

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +++A  +L EM   G+      Y+ LLK YC++ Q +     L + A  A I+ D  
Sbjct: 485 LGLLEQAHDLLDEMRFSGIRVGSSIYSSLLKAYCKEGQHEDDITALLKDAQQAGIQLDSS 544

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS--SQPKLANKVFD 381
            Y  LI   +   ++ GAL  F E++   +   K  +    +    S  ++  L  K+ +
Sbjct: 545 CYEDLIQSRVNHSNTTGALHLFKELKNLNV--LKAGHMEFQRIVQGSDDNEAALMTKLVE 602

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI-SL 440
           E+  D  V   +  WN ++  +C+  L+ +A R + +M+ +G  PN  T+ SL     ++
Sbjct: 603 EVRSDHTVDHAVHEWNNVIHFFCKKRLMHDAHRALNKMRASGHVPNAQTFHSLITAYAAI 662

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             K  E   LW E+K    +              +K D+ELLD+L    VR  FF +A+E
Sbjct: 663 GGKYVEVTDLWGEMKLLASL------------SSMKFDQELLDSLLYCFVRGGFFLRAME 710

Query: 501 IVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558
           ++  ME+  +  +K KYK ++++ H  ++  K A + + + + +R+ AA  FK W+GL
Sbjct: 711 VIEMMEKREMFIDKYKYKSLWLKYHRTLYKGK-APKVQTEAQLKRREAAIRFKKWIGL 767


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 214/455 (47%), Gaps = 31/455 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+V +++ ++  L    D+   E+++L  ++         PD   D  PD  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLC--DDNRSQEALELLQMM---------PDDGGDCPPDVVS 201

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  V+N     G   K    + +M + G  P+V+TY+ +I    +A      + VL  ++
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S+V  Y   G  + A   ++ M     +   ++    L DY  +N G 
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP-DVVTYNSLMDYLCKN-GR 319

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F+ +    + P                 Y TL++GY  +G + +   +L  M 
Sbjct: 320 CTEARKMFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMHGLLDLMV 366

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N  HP+H  ++ ++ A  K G +D+A  V ++M + G+  + +TY  ++   C+  
Sbjct: 367 R---NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ A     +M D+ ++ P  + YN LI    + D    A     EM  RGI    I +
Sbjct: 424 RVEDAMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFF 482

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++ +     +   + K+FD M+R   VK DI+ ++ L++GYC  G ++EA +++  M 
Sbjct: 483 NSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             G  P+  TY +L NG     +  +AL+L++E++
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREME 576



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/466 (21%), Positives = 213/466 (45%), Gaps = 54/466 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++G +P+ + ++++V    +SG   P E++         ++K     +    +PD   
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQ--PKEAIGF-------LKKMHSDGV----EPDVVT 306

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G+  +  ++FD M + G KP++ TY  +++  A       +  +L+ ++
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             GI      F  L+ AY   G ++ A  +   MR+   +        D   Y +     
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP-------DTVTYGTVIGIL 419

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNS 213
              G  +D    FE+++   ++P +                         +L +    ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             + +++  +  EGRV ++ ++   M R       PD +TY+T++     AG MD A ++
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRI---GVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA M  +G+  + +TYN L+ GYC+  +++ A  L REM + + + PD+++YNI++ G  
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESSGVSPDIITYNIILQGLF 595

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVD 392
               +A A   +  +   G      +Y  ++     ++    A ++F  + L D  ++++
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD--LQLE 653

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
              +N+++    ++G  +EAK +   +  NG  P+V TY  +A  +
Sbjct: 654 TRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 183/388 (47%), Gaps = 21/388 (5%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P++ TY +++  C  A R  L    L  +++ G  +    
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIA 128

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  ++       D   ++ +   +R   +  C  I  +   +   +   DD+   E  E 
Sbjct: 129 FTPMLKGLCA--DKRTSDAMDIVLRRMTQLGC--IPNVFSYNILLKGLCDDNRSQEALE- 183

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           LL    +   + P       P+   YTT++ G+  EG   D  +  G      D    P+
Sbjct: 184 LLQMMPDDGGDCP-------PDVVSYTTVINGFFKEG---DLDKAYGTYHEMLDRGILPN 233

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY+++++AL KA +MD+A +VL  M + GV  N  TYN ++ GYC   Q  +A   L+
Sbjct: 234 VVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           +M  D  +EPDVV+YN L+D          A   F+ M  RG+ P   +Y TL++ +A  
Sbjct: 294 KMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
                 + + D M+R+  +  +   +++L+  Y + G V++A  +  +M++ G  P+  T
Sbjct: 353 GALVEMHGLLDLMVRNG-IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 431 YGSLANGISLARKPGEALLLWKE-IKER 457
           YG++   +  + +  +A+  +++ I ER
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDER 439



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 210/455 (46%), Gaps = 35/455 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G LP+V  +S++++ L  A   D      K  +V+   V+        +   P+  
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMD------KAMEVLTSMVK--------NGVMPNCR 270

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++   + G+PK+ +    +MH  G +PDV+TYN ++    +  R      + + +
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+   +TT+ +L+  Y   G L     ++  M          +  + +  Y+   +G
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA--KQG 388

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             D    VF K+    +NP             ++  Y T++      GRV D +R    M
Sbjct: 389 KVDQAMLVFSKMRQQGLNP-------------DTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               D    P ++ Y +++ +L      D+A++++ EM   G+  + I +N ++  +C++
Sbjct: 436 I---DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKE 492

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ ++++L   M     ++PD+++Y+ LIDG+ L      A      M + G+ P  ++
Sbjct: 493 GRVIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y TL+  +   S+ + A  +F EM     V  DI+ +N++++G  +      AK +   +
Sbjct: 552 YNTLINGYCKISRMEDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            E+G    ++TY  + +G+       EAL +++ +
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 130/259 (50%), Gaps = 9/259 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y  L+KG  ++ R  + + +L  M   +     PD V+YTTV++   K G +D+A
Sbjct: 160 PNVFSYNILLKGLCDDNRSQEALELL-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                EM   G+  N +TY+ ++   C+   +DKA E+L  M  +  + P+  +YN ++ 
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG-VMPNCRTYNSIVH 277

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+        A+ F  +M + G+ P  ++Y +LM     + +   A K+FD M +   +K
Sbjct: 278 GYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG-LK 336

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +I  +  L++GY   G + E   +++ M  NG +PN   +  L    +   K  +A+L+
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLV 396

Query: 451 WKEIKERCEVKKEGVNADS 469
           + ++++      +G+N D+
Sbjct: 397 FSKMRQ------QGLNPDT 409


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 206/465 (44%), Gaps = 58/465 (12%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPV-------------ESVKLFDVVV---------KRV 42
           G +PHV A + ++S    S                    SV  F++++         K+ 
Sbjct: 151 GVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKA 210

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
           ++F         KP+   YN +++   + G+ +    +FD M   G KPD  TY   I  
Sbjct: 211 KEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISG 270

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
             +  +      +LE++ E+G+     T+ +L+  Y   G+LE+A           RD  
Sbjct: 271 MCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDY--------RD-- 320

Query: 163 KIIRELDLEDYSSEN--------EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
           K++RE  +   S+ N        +   D+ D + +++        SE     K   P+S 
Sbjct: 321 KMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEM--------SE-----KGLVPDSV 367

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y  L+ GY   G V     +   M  +      P  VTYT+++  L K G M +A  + 
Sbjct: 368 TYNILINGYCRCGNVKKAFTLHDEMISK---GIQPTRVTYTSLIYVLSKRGRMKQADDLF 424

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            ++ R G+  + I +N L+ G+C    +D+A  +L+EM D  K+ PD V++N L+ G   
Sbjct: 425 EKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEM-DQMKVVPDEVTFNTLMQGRCR 483

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 A     EM++RGI P  ISY TL+  ++     K A +V DEML        ++
Sbjct: 484 EGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEML-SIGFNPTLL 542

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            +N L++G C+    + A+++++ M   G  PN  TY SL  GI 
Sbjct: 543 TYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIG 587



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 183/397 (46%), Gaps = 20/397 (5%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++ AC  L +     + FD M   G  P V   N M+ L  +++R      +   + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            M I   + TF  ++      G L+ A+  +  M         +     +  Y S   G 
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCS--RGR 241

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +    +F+ +    +              P+S  Y + + G   EG++ +   ML  M+
Sbjct: 242 VEGARMIFDLMKCRGVK-------------PDSYTYGSFISGMCKEGKLEEASGMLEKMK 288

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    P  VTY T++      G+++ A     +M R G+     TYN+L+       
Sbjct: 289 ---EIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDC 345

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+A  +++EM++   + PD V+YNILI+G+    +   A T  +EM ++GI PT+++Y
Sbjct: 346 KMDEADGIIKEMSEKGLV-PDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTY 404

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T+L+   +   + K A+ +F++++R   +  D++ +N L++G+C  G ++ A  +++ M 
Sbjct: 405 TSLIYVLSKRGRMKQADDLFEKIVRKG-IFPDLIMFNALIDGHCANGNMDRAFAMLKEMD 463

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +    P+  T+ +L  G     K   A  L +E+K R
Sbjct: 464 QMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSR 500



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 139/313 (44%), Gaps = 27/313 (8%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y T++ GY + GRV     +   M+ +      PD  TY + +S + K G ++ A
Sbjct: 224 PNVVTYNTIIHGYCSRGRVEGARMIFDLMKCR---GVKPDSYTYGSFISGMCKEGKLEEA 280

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L +M  IG+    +TYN L+ GYC +  ++ A +   +M  +  + P V +YN+LI 
Sbjct: 281 SGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREG-LMPTVSTYNMLIH 339

Query: 331 GFIL---IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
              L   +D++ G +    EM  +G+ P  ++Y  L+  +      K A  + DEM+   
Sbjct: 340 ALFLDCKMDEADGII---KEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMI-SK 395

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            ++   V +  L+    + G +++A  + E++   G +P++  + +L +G         A
Sbjct: 396 GIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRA 455

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             + KE+ +   V                PDE   + L     R      A E++  M+ 
Sbjct: 456 FAMLKEMDQMKVV----------------PDEVTFNTLMQGRCREGKVEAARELIEEMKS 499

Query: 508 HGIPPNKTKYKKI 520
            GI P+   Y  +
Sbjct: 500 RGIKPDHISYNTL 512



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           + Y++L++  C+  + D A E    M     I P V + N ++  F+  + +  A   + 
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVI-PHVHACNDMLSLFLKSNRTEKAWVLYA 180

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM    I  + +++  ++       + K A K F  ++    +K ++V +N ++ GYC  
Sbjct: 181 EMFRMRIKSSVVTFNIMINVLCKEGKLKKA-KEFIGLMEALGIKPNVVTYNTIIHGYCSR 239

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           G VE A+ I + MK  G  P+  TYGS  +G+    K  EA  + +++KE
Sbjct: 240 GRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKE 289


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 126/543 (23%), Positives = 255/543 (46%), Gaps = 49/543 (9%)

Query: 28  PVESVKLFDVVVKRVRKFSD---PDIVSDSK--------PDTAAYNAVLNACANLGKPKK 76
           P  S+  F+ ++  + K ++   P  +S S+        PD   +N ++N   ++ +   
Sbjct: 62  PTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNF 121

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
              +  ++ + G +PD +T+N +IK LC     K  L F  + +L +G  L   ++ +L+
Sbjct: 122 AFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHF-HDHVLALGFHLDQFSYGTLI 180

Query: 136 AAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNS 195
                 G+     T +Q +R+    + KI    ++  Y++        D     KL+ ++
Sbjct: 181 NGLCKIGE---TRTALQMLRKIDGKLVKI----NVVMYNTI------IDSLCKHKLVIDA 227

Query: 196 INPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
               S+  ++ K  +P+   ++ L+ G+   G++ +   +   M  +  N   PD+ T+ 
Sbjct: 228 YELYSQ--MIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNIN---PDYYTFN 282

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            +V AL K G++  A+ +L  M + GV  N +TY+ L+ GYC   Q++KAK +L  ++  
Sbjct: 283 ILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQM 342

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
               P+  SY  +I+GF  I     AL+ FN+M+ +GIAP K++Y +L+     S +   
Sbjct: 343 GA-APNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISY 401

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A ++ DEM  D     +I  +N L++  C+   V++A  +++++K+ G  P++ T+  L 
Sbjct: 402 AWELVDEM-HDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILI 460

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
            G+    +   A  +++++      K   VNA +             + + +   +   F
Sbjct: 461 YGLCKVGRLKNAQDVFQDLLS----KGYSVNAWT------------YNIMVNGLCKEGLF 504

Query: 496 RKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFW 555
            +A  +++ M+++GI P+   Y+ +   +  +    K     R+   R+   A E  +  
Sbjct: 505 DEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDVVYALEGLEMV 564

Query: 556 LGL 558
           L L
Sbjct: 565 LHL 567



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 208/462 (45%), Gaps = 43/462 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P    ++T++  L  +G              VK    F D  +      D  +
Sbjct: 129 ILKMGYEPDTITFNTLIKGLCLNGK-------------VKEALHFHDHVLALGFHLDQFS 175

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF----V 115
           Y  ++N    +G+ +  LQ+  ++     K +V+ YN +I  LC     KH LV     +
Sbjct: 176 YGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLC-----KHKLVIDAYEL 230

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             +++   I+  + TF +L+  +   G LE A  + + M         +++ ++  DY +
Sbjct: 231 YSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREM---------VLKNIN-PDYYT 280

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            N   D    E   K   N +       ++ +   PN   Y++LM GY    +V+    +
Sbjct: 281 FNILVDALCKEGNLKGAKNML-----VVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHV 335

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  + +     + P+  +Y T+++   K   +D A  +  +M   G+  +++TYN L+ G
Sbjct: 336 LNTISQM---GAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDG 392

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +I  A EL+ EM D+ +   ++ +YN LID          A+    +++ +GI P
Sbjct: 393 LCKSGRISYAWELVDEMHDNGQ-PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQP 451

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              ++  L+       + K A  VF ++L      V+   +N++V G C+ GL +EA+ +
Sbjct: 452 DMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGY-SVNAWTYNIMVNGLCKEGLFDEAEAL 510

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           + +M +NG  P+  TY +L   +    +  +A  L +E+  R
Sbjct: 511 LSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIAR 552


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 124/518 (23%), Positives = 227/518 (43%), Gaps = 43/518 (8%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD----IVSDS---KPDTA 59
           L    ++ ++ + L      G + +   F  +++    F + +    I+ +    KPDT 
Sbjct: 65  LTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILENELGFKPDTN 124

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN  LNA     K K    L  +M   G   DV T+NV+IK   +A +    + +LE +
Sbjct: 125 FYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEM 184

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G+     TF +L+  ++  GDL  A  + + M      +  +  ++ +  +  E   
Sbjct: 185 ANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGR- 243

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                    E+ L   +  S E       F+P+   + +L+ G+   G V+D + ++  M
Sbjct: 244 --------VEEALRFVLEVSEE------GFSPDQVTFNSLVNGFCRIGNVNDALDIVDFM 289

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             +      PD  TY +++S + K G  ++A ++L +M       N +TYN L+   C++
Sbjct: 290 IEK---GFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKE 346

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +I+ A +L R +     + PDV ++N LI G  L  +   A+  F EM+ +G  P + +
Sbjct: 347 NEIEAATDLARILVSKGLL-PDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFT 405

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+ L+ +     + K A  +  EM        + V +N L++G C+   +E+A+ I ++M
Sbjct: 406 YSILIDSLCYERRLKEALMLLKEM-ESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQM 464

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +  G   +  TY +L +G+   ++  EA  L                 D  +   LKPD+
Sbjct: 465 ELLGVSRSSVTYNTLIDGLCKNKRVEEASQLM----------------DQMIMEGLKPDK 508

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              ++L     R     KA +IV  M  +G  P+   Y
Sbjct: 509 FTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTY 546



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 186/450 (41%), Gaps = 65/450 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +N+++N    +G     L + D M E G  PDV TYN +I    +       + +
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEI 320

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCK---IIRELDL 170
           L++++    +    T+ +L++A     ++E A  + + +  +    DVC    +I+ L L
Sbjct: 321 LQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCL 380

Query: 171 ---EDYSSE------NEGDDDD--------DDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
              +D + E      N+G   D        D   +E+ L  ++    E  +     A N+
Sbjct: 381 SKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKE--MESSGCARNA 438

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
            +Y TL+ G     R+ D   +   M     + S    VTY T++  L K   ++ A Q+
Sbjct: 439 VVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSS---VTYNTLIDGLCKNKRVEEASQL 495

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           + +M   G+  ++ TYN LL  +C+   I+KA ++++ MA +   EPD+ +Y  LI G  
Sbjct: 496 MDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNG-CEPDIFTYGTLIGGLC 554

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR--DP---- 387
                  A      ++ +GI  T  +Y  +++A  +  + K   ++F EM+   DP    
Sbjct: 555 RAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDAL 614

Query: 388 ----------------RVKVDIV-------------AWNMLVEGYCRMGLVEEAKRIIER 418
                           +  +D               ++  L EG C + + +    +I  
Sbjct: 615 THKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINM 674

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEAL 448
           + E        T  S+  G    RK  +AL
Sbjct: 675 VMEKAQMSERET--SMIRGFLKIRKFNDAL 702



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 122/282 (43%), Gaps = 20/282 (7%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           +++ + + S P+  T+ T++ +      ++   ++L     +G   +   YNI L    +
Sbjct: 78  LKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILE--NELGFKPDTNFYNIALNALVE 135

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++   + L  +M ++  I  DV ++N+LI           A+    EM   G+ P +I
Sbjct: 136 DNKLKLVEMLHSKMVNEG-IVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEI 194

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++TTLM+ F        A K+  +ML    +  + V+  +LV G+C+ G VEEA R +  
Sbjct: 195 TFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTN-VSVKVLVNGFCKEGRVEEALRFVLE 253

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           + E GF P+  T+ SL NG        +AL +   + E+                   PD
Sbjct: 254 VSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEK----------------GFDPD 297

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               ++L     +   F KA+EI+  M      PN   Y  +
Sbjct: 298 VYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTL 339


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 184/374 (49%), Gaps = 22/374 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   + ++L+   +  + +  L LFDQ+   G +P+V+TY  +I    +    +  V 
Sbjct: 149 EPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVE 208

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ-AMREGRRDVCKIIRELDLEDY 173
           +  ++ + GI   + T+ SLV+     G    A  +++  M+ G +    +I    L D 
Sbjct: 209 IFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQP--NVITFTALID- 265

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           +    G   +  E+++ ++  S+              P+   YT L+ G    GR+ +  
Sbjct: 266 AFVKVGKIMEAKELYKVMIQMSV-------------YPDVFTYTALINGLCTYGRLDEAR 312

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +M   M   E N  +P+ VTYTT++    K+  ++   ++  EM++ G+ AN ITY +L+
Sbjct: 313 QMFYLM---ESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLI 369

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           +GYC   + D A+E+  +M    +  PD+ +YN+L+DG         AL  F  MR R +
Sbjct: 370 QGYCLVGRPDVAQEVFNQMGSR-RAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREM 428

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               ++YT +++      + + A  +F  +     +K +++ +  ++ G+CR G + EA 
Sbjct: 429 DINIVTYTIIIQGMCKVGKVEDAFDLFCSLF-SKGMKPNVITYTTMISGFCRRGFIHEAD 487

Query: 414 RIIERMKENGFYPN 427
            + ++MKE+GF PN
Sbjct: 488 ALFKKMKEDGFLPN 501



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 191/424 (45%), Gaps = 31/424 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +L+  A + +    + LF+QM   G  P + T N+++    R+S+       
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYS 174
           L +++++G    + TF SL+  +  +  +E A  +  Q +  G R    ++    L    
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRP--NVVTYTTLIHCL 197

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPN 212
            +N    +   E+F ++  N I P+                          ++ +   PN
Sbjct: 198 CKNR-HLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPN 256

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              +T L+  ++  G++ +   +   M +    + +PD  TYT +++ L   G +D ARQ
Sbjct: 257 VITFTALIDAFVKVGKIMEAKELYKVMIQM---SVYPDVFTYTALINGLCTYGRLDEARQ 313

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +   M   G   N +TY  L+ G+C+  +++   ++  EM+    +  + ++Y +LI G+
Sbjct: 314 MFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLV-ANTITYTVLIQGY 372

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
            L+     A   FN+M +R   P   +Y  L+     +   + A  +F  M R   + ++
Sbjct: 373 CLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYM-RKREMDIN 431

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           IV + ++++G C++G VE+A  +   +   G  PNV TY ++ +G        EA  L+K
Sbjct: 432 IVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFK 491

Query: 453 EIKE 456
           ++KE
Sbjct: 492 KMKE 495



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  V +T ++S + K    D    +  +M  +G+     T NI++   C+  Q  +A   
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L +M      EPD+V++  L+ GF   +    AL  F+++   G  P  ++YTTL+    
Sbjct: 140 LGKMM-KLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLC 198

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +     A ++F++M  D  ++ ++V +N LV G C +G   +A  ++  M + G  PNV
Sbjct: 199 KNRHLNHAVEIFNQM-GDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNV 257

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            T+ +L +      K  EA  L+K +                +   + PD     AL + 
Sbjct: 258 ITFTALIDAFVKVGKIMEAKELYKVM----------------IQMSVYPDVFTYTALING 301

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                   +A ++   ME +G  PN+  Y  +
Sbjct: 302 LCTYGRLDEARQMFYLMESNGYYPNEVTYTTL 333



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 24/235 (10%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y  +L+     LQ ++A +L   M     + P +V +  L+     +      ++ F +M
Sbjct: 50  YRKILRNGLHNLQFNEALDLFTRMVHSRPL-PSIVDFTRLLSVIAKMKRFDVVISLFEQM 108

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCR 405
           +  GI+P   +   +M     SSQP  A+    +M++   +P    D+V +  L+ G+C 
Sbjct: 109 QILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEP----DLVTFTSLLHGFCH 164

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
              +E+A  + +++   GF PNV TY +L + +   R    A+ ++ ++           
Sbjct: 165 WNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM----------- 213

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             D+ + P +     L+  L +I      +  A  ++  M + GI PN   +  +
Sbjct: 214 -GDNGIRPNVVTYNSLVSGLCEI----GRWSDAAWLLRDMMKRGIQPNVITFTAL 263


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 209/462 (45%), Gaps = 35/462 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   + N++LN     G+      ++ QM   G  PDV   ++M+    +  +       
Sbjct: 155 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 214

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++++  +G+   + T+ SL+  YV  GD+E A+ +++ M E       +   L ++ Y  
Sbjct: 215 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 274

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + + D+       EK+L      ++          P+ R Y  L+ GY   G++ D VR+
Sbjct: 275 QCKMDEA------EKVLRGMQEEAA--------LVPDERAYGVLIDGYCRTGKIDDAVRL 320

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M R        +     ++++   K G +  A  V+  M    +  +  +YN LL G
Sbjct: 321 LDEMLRL---GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 377

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++    +A  L  +M  +  IEP V++YN L+ G   +     AL  ++ M  RG+AP
Sbjct: 378 YCREGHTSEAFNLCDKMLQEG-IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAP 436

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            ++ Y+TL+         + A+ ++ ++L     K  I  +N ++ G C+MG + EA+ I
Sbjct: 437 DEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEI 495

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            ++MK+ G  P+  TY +L +G   A   G+A       K +  +++E          P+
Sbjct: 496 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF------KVKGAMERE----------PI 539

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            P  E+ ++L     ++    +  +++  M   G+ PN   Y
Sbjct: 540 SPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTY 581



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 184/450 (40%), Gaps = 87/450 (19%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR------ 108
           KPD+ +YN +L+     G   +   L D+M + G +P VLTYN ++K   R         
Sbjct: 365 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 424

Query: 109 -KHLL------------------VFVLER----------ILEMGITLCMTTFQSLVAAYV 139
             HL+                  +F +E           IL  G T    TF ++++   
Sbjct: 425 IWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 484

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS-SENEGDDDDDDEVFEKLLPNSINP 198
             G +  AE I   M++       I     ++ Y  + N G         E+        
Sbjct: 485 KMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-------- 536

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
             EP       +P+  +Y +L+ G     R+ +   +L  M  +      P+ VTY  ++
Sbjct: 537 --EP------ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIR---GLTPNIVTYGALI 585

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD--- 315
               K G +D+A     EMT  G+ AN I  + ++ G  +  +ID+A  L+++M D    
Sbjct: 586 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 645

Query: 316 -------------AKIE---------------PDVVSYNILIDGFILIDDSAGALTFFNE 347
                        A I+               P+ + YNI I G         A  FF+ 
Sbjct: 646 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSM 705

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           +  +G  P   +Y TL+  ++ +     A ++ DEMLR   V  +IV +N L+ G C+  
Sbjct: 706 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVP-NIVTYNALINGLCKSE 764

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANG 437
            V+ A+R+  ++ + G +PNV TY +L +G
Sbjct: 765 NVDRAQRLFHKLHQKGLFPNVVTYNTLIDG 794



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 111/491 (22%), Positives = 207/491 (42%), Gaps = 71/491 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G +P V   S +V+   A   DG V+    F      V+K  +  +    +P+   
Sbjct: 183 MIRVGIVPDVFMVSIMVN---AFCKDGKVDEAAGF------VKKMENLGV----EPNIVT 229

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC---------------- 103
           Y++++N   +LG  +    +   M E G   +V+TY ++IK  C                
Sbjct: 230 YHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQ 289

Query: 104 -------------------ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
                               R  +    V +L+ +L +G+   +    SL+  Y   G++
Sbjct: 290 EEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEI 349

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
             AE ++  M +             L+ Y    EG   +   + +K+L   I    EP +
Sbjct: 350 HEAEGVITRMVDWNLKPDSYSYNTLLDGYC--REGHTSEAFNLCDKMLQEGI----EPTV 403

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           L          Y TL+KG    G   D +++   M ++      PD V Y+T++  L K 
Sbjct: 404 LT---------YNTLLKGLCRVGAFDDALQIWHLMMKR---GVAPDEVGYSTLLDGLFKM 451

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
            + + A  +  ++   G   +RIT+N ++ G C+  ++ +A+E+  +M  D    PD ++
Sbjct: 452 ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSPDGIT 510

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM- 383
           Y  LIDG+    +   A      M    I+P+   Y +L+     S +      +  EM 
Sbjct: 511 YRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMG 570

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +R   +  +IV +  L++G+C+ G++++A      M ENG   N+    ++ +G+    +
Sbjct: 571 IRG--LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGR 628

Query: 444 PGEALLLWKEI 454
             EA LL +++
Sbjct: 629 IDEANLLMQKM 639



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 148/351 (42%), Gaps = 60/351 (17%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS------------ 107
            +N +++    +GK  +  ++FD+M + G  PD +TY  +I    +AS            
Sbjct: 475 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 534

Query: 108 --------------------RKHLLVFVLERILEMGI---TLCMTTFQSLVAAYVGFGDL 144
                               +   LV V + + EMGI   T  + T+ +L+  +   G L
Sbjct: 535 EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 594

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
           + A +    M E       II    +        G  D+ + + +K++ +   P  E  L
Sbjct: 595 DKAFSSYFEMTENGLSANIIICSTMVSGLY--RLGRIDEANLLMQKMVDHGFFPDHECFL 652

Query: 205 LP------------------KTFA-PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                               KTF  PN+ +Y   + G    G+V D  R    +  +   
Sbjct: 653 KSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK--- 709

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD+ TY T++     AG++D A ++  EM R G+  N +TYN L+ G C+   +D+A
Sbjct: 710 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRA 769

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           + L  ++     + P+VV+YN LIDG+  I +   A    ++M   GI+P+
Sbjct: 770 QRLFHKLHQKG-LFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPS 819



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 13/121 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P    + T++   +A+G+    E+ +L D +++R              P+   YNA+
Sbjct: 710 GFVPDNFTYCTLIHGYSAAGNVD--EAFRLRDEMLRR-----------GLVPNIVTYNAL 756

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N         +  +LF ++H+ G  P+V+TYN +I    +         + ++++E GI
Sbjct: 757 INGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGI 816

Query: 125 T 125
           +
Sbjct: 817 S 817


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 207/481 (43%), Gaps = 71/481 (14%)

Query: 12  AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
            + T V  + +SGD DG    VK                  S  +P+   Y  ++     
Sbjct: 422 TYGTAVKGMCSSGDLDGAYNIVKEMGA--------------SGCRPNVVIYTTLIKTFLQ 467

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
             +    +++  +M E G  PD   YN +I   ++A +       L  ++E G      T
Sbjct: 468 KSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFT 527

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           + + ++ Y+  G+   A+  V+ M E      K++    + +Y  + +        V E 
Sbjct: 528 YGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGK--------VIEA 579

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
                   S+   ++ +    +++ YT LM G +  G+V+D   +   MR +      PD
Sbjct: 580 C-------SAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGK---GIAPD 629

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
             +Y T++    K G+M +A  +  EM + G+ +N I YN+LL G+C+  +I+KAKELL 
Sbjct: 630 VFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLD 689

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM------ 364
           EM+      P+ V+Y  +IDG+    D A A   F+EM+ +G+ P    YTTL+      
Sbjct: 690 EMSGKG-FPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRL 748

Query: 365 --------------KAFALSSQP--KLANKVF--------DEMLR-------DPRVKVDI 393
                         K  A SS P   L N VF         +M+        D   K + 
Sbjct: 749 NDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPND 808

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N++++  C+ G +E AK +   M++    P V TY SL NG     +  E   ++ E
Sbjct: 809 VTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDE 868

Query: 454 I 454
           +
Sbjct: 869 V 869



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 148/323 (45%), Gaps = 50/323 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE--------------------------- 243
           PN  IYTTL+K ++ + R  D VR+L  MR Q                            
Sbjct: 453 PNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSF 512

Query: 244 -----DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
                +N   PD  TY   +S  ++AG    A + + EM   GV  N++    L+  YC+
Sbjct: 513 LLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCK 572

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++ +A    R M +   I  D  +Y +L++G +       A   F+EMR +GIAP   
Sbjct: 573 KGKVIEACSAFRSMVEQG-ILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVF 631

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           SY TL+  F+     + A+ +FDEM++   +  +++ +NML+ G+CR G +E+AK +++ 
Sbjct: 632 SYGTLIDGFSKLGNMQKASSIFDEMVQ-AGLTSNVIIYNMLLGGFCRSGEIEKAKELLDE 690

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M   GF PN  TY ++ +G   +    EA  L+ E+K +                 L PD
Sbjct: 691 MSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLK----------------GLVPD 734

Query: 479 EELLDALADICVRAAFFRKALEI 501
             +   L D C R     +A+ I
Sbjct: 735 SFVYTTLVDGCCRLNDVERAITI 757



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 138/308 (44%), Gaps = 27/308 (8%)

Query: 216 YTTLMKGYMNEGRVS---DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           Y T +KG  + G +    + V+ +GA      +   P+ V YTT++   ++      A +
Sbjct: 423 YGTAVKGMCSSGDLDGAYNIVKEMGA------SGCRPNVVIYTTLIKTFLQKSRFGDAVR 476

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           VL EM   G+  +   YN L+ G  +  ++D+A+  L EM ++   +PD  +Y   I G+
Sbjct: 477 VLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENG-FKPDAFTYGAFISGY 535

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
           I   + A A  +  EM   G+ P K+  T L+  +    +   A   F  M+ +  +  D
Sbjct: 536 IEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMV-EQGILGD 594

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
              + +L+ G  + G V +A+ I   M+  G  P+V +YG+L +G S      +A  ++ 
Sbjct: 595 AKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFD 654

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E+ +       G+ ++  +   L         L   C R+    KA E++  M   G PP
Sbjct: 655 EMVQ------AGLTSNVIIYNML---------LGGFC-RSGEIEKAKELLDEMSGKGFPP 698

Query: 513 NKTKYKKI 520
           N   Y  I
Sbjct: 699 NAVTYCTI 706



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/454 (18%), Positives = 185/454 (40%), Gaps = 79/454 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G +P+    + +++     G    +E+   F       R   +  I+ D+K     
Sbjct: 551 MLECGVIPNKVLCTGLINEYCKKGK--VIEACSAF-------RSMVEQGILGDAK----T 597

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N     GK     ++F +M   G  PDV +Y  +I   ++         + + ++
Sbjct: 598 YTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMV 657

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+T  +  +  L+  +   G++E A+ ++  M                          
Sbjct: 658 QAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMS------------------------- 692

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K F PN+  Y T++ GY   G +++  ++   M+
Sbjct: 693 -------------------------GKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMK 727

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD   YTT+V    +   ++RA  +  E    G  ++   +N L+    +  
Sbjct: 728 LK---GLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEKGCASSSAPFNALINWVFKFG 783

Query: 301 QIDKAKELLREMAD---DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           + +   +++  + D   D   +P+ V+YNI+ID      +   A   F+ M+   + PT 
Sbjct: 784 KTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTV 843

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           I+YT+L+  +    +      VFDE++    ++ D + +++++  + + G+  +A  +++
Sbjct: 844 ITYTSLLNGYDKMGRRSEMFSVFDEVIA-AGIEPDNIMYSVIINAFLKEGMTTKALVLLD 902

Query: 418 RM-----KENGFYPNVATYGSLANGISLARKPGE 446
           +M      ++G   +++T  +L +G +   K GE
Sbjct: 903 QMFAKNAVDDGCKLSISTCRALLSGFA---KVGE 933



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 125/310 (40%), Gaps = 68/310 (21%)

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           ++D A ++   M+  G+  +R +YN+L+ G C+Q +++ AK LL EM +   +  D V+Y
Sbjct: 260 NVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEM-NSVGLFADNVAY 318

Query: 326 NILIDG-------------------------------FILIDDSAGAL----TFFNEMRA 350
           +ILIDG                               FI +    GA+      F+ M  
Sbjct: 319 SILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMIT 378

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G+ P   +Y +L++ F      +   ++  E ++   + +    +   V+G C  G ++
Sbjct: 379 FGVTPGARAYASLIEGFFREKNVRKGYELLVE-IKKRNIVISPYTYGTAVKGMCSSGDLD 437

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            A  I++ M  +G  PNV  Y +L        + G+A+ + KE++E      +G+  D+ 
Sbjct: 438 GAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMRE------QGIAPDTF 491

Query: 471 LPPPL-------------------------KPDEELLDALADICVRAAFFRKALEIVACM 505
               L                         KPD     A     + A  F  A + V  M
Sbjct: 492 CYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEM 551

Query: 506 EEHGIPPNKT 515
            E G+ PNK 
Sbjct: 552 LECGVIPNKV 561



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 136/350 (38%), Gaps = 43/350 (12%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           ++  L+ GY+ +G + + V +  +  +  D    P       ++ AL+K   +D    V 
Sbjct: 154 LFGILIDGYIEKGFLDEAVFVFSS-TKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVY 212

Query: 275 AEMTRIGVPANRITYNILLKGYCQ---------------------QLQIDKAKELLREMA 313
             M    V  +  +Y +L+  +C+                      L +D+A EL + M+
Sbjct: 213 KGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMS 272

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
               + P   SYN+LIDG         A +   EM + G+    ++Y+ L+         
Sbjct: 273 CKGLV-PSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNA 331

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             AN +  EM+      +D + ++  +    + G +E+AK + + M   G  P    Y S
Sbjct: 332 DAANGLVHEMVSHG-FSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYAS 390

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKK--------EGVNADSDL-----------PPP 474
           L  G    +   +   L  EIK+R  V          +G+ +  DL              
Sbjct: 391 LIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASG 450

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            +P+  +   L    ++ + F  A+ ++  M E GI P+   Y  + + +
Sbjct: 451 CRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGL 500


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 218/497 (43%), Gaps = 50/497 (10%)

Query: 30  ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
           E  +LFD  V  +     P  +   + DT  YN +LN      K K    ++ +M   G 
Sbjct: 120 EGQQLFDDAVDLILNQLQP--LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGI 177

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           KPDV+T+N ++K   RA +    V +LE +   G+    TTF +L+  +V  G +E A  
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           +   M E      K+   + +  Y     G  +D     ++ + +              F
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCK--LGRVEDALGYIQQEIADG-------------F 282

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   Y T + G      V   ++++  M ++      PD  TY  VV+ L K G ++ 
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE---GHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A+ +L +M   G   +  T+N L+   C   ++++A +L R++     + PDV ++NILI
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG-VSPDVYTFNILI 398

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD--- 386
           +    + D   AL  F EM+  G  P +++Y TL+    L S  KL   +  ++L+D   
Sbjct: 399 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID--NLCSLGKLGKAL--DLLKDMES 454

Query: 387 ---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
              PR     + +N +++G C+   +EEA+ + ++M   G   N  T+ +L +G+   +K
Sbjct: 455 TGCPR---STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A  L  ++                +   L+P+    +++     +    +KA +I+ 
Sbjct: 512 IDDAFELINQM----------------ISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 504 CMEEHGIPPNKTKYKKI 520
            M  +G   +   Y  +
Sbjct: 556 TMTANGFEVDVVTYGTL 572



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 176/422 (41%), Gaps = 45/422 (10%)

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENEGDDDDD---- 184
            ++ ++      G L++ + +V  MR EG +    ++    L+ Y  +   DD  D    
Sbjct: 76  VYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSF-LDSYEGQQLFDDAVDLILN 134

Query: 185 ----------DEVFEKLLPNSINPSSEPPLLPKTFA--------PNSRIYTTLMKGYMNE 226
                     D V    L N +   S+  LL   ++        P+   + TLMK     
Sbjct: 135 QLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRA 194

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            +V   V ML  M  +      PD  T+TT++   V+ GS++ A +V A M  +G  A +
Sbjct: 195 HQVRTAVLMLEEMSSR---GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +T N+L+ GYC+  +++ A   +++   D   EPD ++YN  ++G    D    AL   +
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADG-FEPDQITYNTFVNGLCQNDHVGHALKVMD 310

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M   G  P   +Y  ++     + Q + A  + ++M+ D     DI  +N L+   C  
Sbjct: 311 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV-DRGCLPDITTFNTLIAALCTG 369

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
             +EEA  +  ++   G  P+V T+  L N +     P  AL L++E+K           
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKN---------- 419

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
                     PDE   + L D         KAL+++  ME  G P +   Y  I   +  
Sbjct: 420 ------SGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 527 RM 528
           +M
Sbjct: 474 KM 475



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 192/462 (41%), Gaps = 48/462 (10%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           +I    +PD   YN  +N           L++ D M + G  PDV TYN+++    +  +
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 +L ++++ G    +TTF +L+AA      LE              +   + R++
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLE--------------EALDLARQV 382

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
            ++  S          D     +L N++    +P L  + F         P+   Y TL+
Sbjct: 383 TVKGVSP---------DVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
               + G++   + +L  M   E        +TY T++  L K   ++ A +V  +M   
Sbjct: 434 DNLCSLGKLGKALDLLKDM---ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ 490

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  N IT+N L+ G C+  +ID A EL+ +M  +  ++P+ ++YN ++  +    D   
Sbjct: 491 GISRNAITFNTLIDGLCKDKKIDDAFELINQMISEG-LQPNNITYNSILTHYCKQGDIKK 549

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A      M A G     ++Y TL+     + + ++A KV   M R   ++    A+N ++
Sbjct: 550 AADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGM-RIKGMRPTPKAYNPVL 608

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +   R   + +A  +   M E G  P+  TY  +  G+     P         IKE  + 
Sbjct: 609 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGP---------IKEAFDF 659

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
             E V  D    P       L + L ++ +   F R A+EI+
Sbjct: 660 MLEMV--DKGFIPEFSSFRMLAEGLLNLGMDDYFIR-AIEII 698


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 210/466 (45%), Gaps = 41/466 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLVF 114
           P++  Y  ++++ +   +  + LQL ++M   G  PD  T+N V++ LC +  R +    
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC-KFDRINEAAK 308

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++ R+L  G      T+  L+      G ++ A+ +   + +        I   +   + 
Sbjct: 309 MVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE------IVIFNTLIHG 362

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  DD   V   ++ +                P+   Y +L+ GY  EG V   + 
Sbjct: 363 FVTHGRLDDAKAVLSDMVTS------------YGIVPDVCTYNSLIYGYWKEGLVGLALE 410

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  MR +      P+  +YT +V    K G +D A  VL EM+  G+  N + +N L+ 
Sbjct: 411 VLHDMRNK---GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS 467

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C++ +I +A E+ REM      +PDV ++N LI G   +D+   AL    +M + G+ 
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKG-CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVV 526

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++Y TL+ AF    + K A K+ +EM+      +D + +N L++G CR G V++A+ 
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS-PLDEITYNSLIKGLCRAGEVDKARS 585

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           + E+M  +G  P+  +   L NG+  +            ++E  E +KE V   S     
Sbjct: 586 LFEKMLRDGHAPSNISCNILINGLCRS----------GMVEEAVEFQKEMVLRGS----- 630

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             PD    ++L +   RA      L +   ++  GIPP+   +  +
Sbjct: 631 -TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 168/387 (43%), Gaps = 25/387 (6%)

Query: 55  KPDTAAYNAVLNACANLGK---PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           KP+   +N +++     G+    K  L   D +  +G  PDV TYN +I    +     L
Sbjct: 350 KPEIVIFNTLIHGFVTHGRLDDAKAVLS--DMVTSYGIVPDVCTYNSLIYGYWKEGLVGL 407

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + VL  +   G    + ++  LV  +   G ++ A  ++  M         +     + 
Sbjct: 408 ALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS 467

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            +  E+              +P ++    E P   K   P+   + +L+ G      V +
Sbjct: 468 AFCKEHR-------------IPEAVEIFREMP--RKGCKPDVYTFNSLISGLC---EVDE 509

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
               L  +R         + VTY T+++A ++ G +  AR+++ EM   G P + ITYN 
Sbjct: 510 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+KG C+  ++DKA+ L  +M  D    P  +S NILI+G         A+ F  EM  R
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGH-APSNISCNILINGLCRSGMVEEAVEFQKEMVLR 628

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G  P  +++ +L+     + + +    +F + L+   +  D V +N L+   C+ G V +
Sbjct: 629 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRK-LQAEGIPPDTVTFNTLMSWLCKGGFVYD 687

Query: 412 AKRIIERMKENGFYPNVATYGSLANGI 438
           A  +++   E+GF PN  T+  L   I
Sbjct: 688 ACLLLDEGIEDGFVPNHRTWSILLQSI 714



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L +   P    +  +MK +     +   + +L  M +       P+ V Y T++ +L K
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKH---GCVPNSVIYQTLIHSLSK 264

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A Q+L EM  +G   +  T+N ++ G C+  +I++A +++  M       PD +
Sbjct: 265 CNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG-FAPDDI 323

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  L++G   I     A   F     R   P  + + TL+  F    +   A  V  +M
Sbjct: 324 TYGYLMNGLCKIGRVDAAKDLF----YRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDM 379

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +    +  D+  +N L+ GY + GLV  A  ++  M+  G  PNV +Y  L +G     K
Sbjct: 380 VTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  +  E+           +AD      LKP+    + L     +     +A+EI  
Sbjct: 440 IDEAYNVLNEM-----------SADG-----LKPNTVGFNCLISAFCKEHRIPEAVEIFR 483

Query: 504 CMEEHGIPPNKTKYKKI 520
            M   G  P+   +  +
Sbjct: 484 EMPRKGCKPDVYTFNSL 500



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 33/286 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP+T  +N +++A     +  + +++F +M   G KPDV T+N +I  LC     KH L 
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL- 514

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLED 172
           ++L  ++  G+     T+ +L+ A++  G+++ A  +V  M  +G          LD   
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG--------SPLDEIT 566

Query: 173 YSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y+S        G+ D    +FEK+L +               AP++     L+ G    G
Sbjct: 567 YNSLIKGLCRAGEVDKARSLFEKMLRDG-------------HAPSNISCNILINGLCRSG 613

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            V + V     M  +    S PD VT+ ++++ L +AG ++    +  ++   G+P + +
Sbjct: 614 MVEEAVEFQKEMVLR---GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           T+N L+   C+   +  A  LL E  +D  + P+  +++IL+   I
Sbjct: 671 TFNTLMSWLCKGGFVYDACLLLDEGIEDGFV-PNHRTWSILLQSII 715



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 36/221 (16%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
            Y  ++  L   G      ++L +M   G+      +  +++ Y +     +   L+ EM
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172

Query: 313 ADDAKIEPDVVSYNILID-----------------------------------GFILIDD 337
            +    EP   SYN++++                                    F  +++
Sbjct: 173 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE 232

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              AL+   +M   G  P  + Y TL+ + +  ++   A ++ +EM     V  D   +N
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP-DAETFN 291

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            ++ G C+   + EA +++ RM   GF P+  TYG L NG+
Sbjct: 292 DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G+ P   + + +++ L  SG             +V+   +F    ++  S PD   
Sbjct: 590 MLRDGHAPSNISCNILINGLCRSG-------------MVEEAVEFQKEMVLRGSTPDIVT 636

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N+++N     G+ +  L +F ++   G  PD +T+N ++    +    +    +L+  +
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGI 696

Query: 121 EMGITLCMTTFQSLVAAYV 139
           E G      T+  L+ + +
Sbjct: 697 EDGFVPNHRTWSILLQSII 715



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 15/156 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G + +   ++T+++     G+             +K  RK  +  +   S  D   
Sbjct: 520 MISEGVVANTVTYNTLINAFLRRGE-------------IKEARKLVNEMVFQGSPLDEIT 566

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN+++      G+  K   LF++M   G  P  ++ N++I  LC     +  + F  E +
Sbjct: 567 YNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMV 626

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           L  G T  + TF SL+      G +E   T+ + ++
Sbjct: 627 LR-GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 661


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 208/461 (45%), Gaps = 35/461 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T  YN +LN   +  K K        M   G +PDV T+N++IK   RA +    + ++
Sbjct: 159 NTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLM 218

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E + + G+     TF +++  ++  G+L+ A  + + M E    V  +   + +  +   
Sbjct: 219 EEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFC-- 276

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            EG  ++     E++             L + F P+   +  L+ G    G V   + ++
Sbjct: 277 KEGRIEEALRFIEEM------------SLREGFFPDKYTFNMLVNGLSKTGHVKHALEVM 324

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M R+      PD  TY +++S L K G +D A +VL +M       N +TYN ++   
Sbjct: 325 DMMLRE---GFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTL 381

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++ Q+++A +L   +     I PDV +YN LI G  L  +   A+  + EM+ +G  P 
Sbjct: 382 CKENQVEEATKLALVLTGKG-ILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPD 440

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           + +Y  L+ +     + + A  +  EM      + +++ +N L++G+C+   + EA+ I 
Sbjct: 441 EFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCAR-NVITYNTLIDGFCKNKRIAEAEEIF 499

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           ++M+  G   N  TY +L +G+  + +  EA  L                 D  +   L+
Sbjct: 500 DQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLM----------------DQMIMEGLR 543

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           PD+   ++L     +A   +KA +IV  M   G  P+   Y
Sbjct: 544 PDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTY 584



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 194/442 (43%), Gaps = 35/442 (7%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           LR G+ P    ++ +V+ L+ +G              VK   +  D  +     PD   Y
Sbjct: 293 LREGFFPDKYTFNMLVNGLSKTGH-------------VKHALEVMDMMLREGFDPDIYTY 339

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N++++    LG+  + +++ +QM E    P+ +TYN +I    + ++      +   +  
Sbjct: 340 NSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTG 399

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            GI   + T+ SL+       +  +A   ++  +E +   C          +  E   + 
Sbjct: 400 KGILPDVCTYNSLIQGLCLSRNHTVA---MELYKEMKTKGC----------HPDEFTYNM 446

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
             D   F   L  ++N   E  +     A N   Y TL+ G+    R+++   +   M  
Sbjct: 447 LIDSLCFRGKLQEALNLLKEMEV--SGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMEL 504

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q       + VTY T++  L K+  ++ A Q++ +M   G+  ++ TYN LL  +C+   
Sbjct: 505 Q---GVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGD 561

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           I KA ++++ MA D   EPD+V+Y  LI G         A      ++ +GI  T  +Y 
Sbjct: 562 IKKAADIVQTMASDG-CEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYN 620

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL-VEEAKRIIERMK 420
            +++A     + K A ++F EM+       D V + ++  G C+ G  + EA   +  M 
Sbjct: 621 PVIQALFRRKRSKEAVRLFREMIEKAEAP-DAVTYKIVFRGLCQGGGPIGEAVDFVMEML 679

Query: 421 ENGFYPNVATYGSLANGI-SLA 441
           E G+ P  +++  LA G+ SLA
Sbjct: 680 ERGYVPEFSSFYMLAEGLFSLA 701



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 169/406 (41%), Gaps = 59/406 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +N ++N  +  G  K  L++ D M   G  PD+ TYN +I    +       V V
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++E   +    T+ ++++                        +CK            
Sbjct: 359 LNQMIERDCSPNTVTYNTIIST-----------------------LCK------------ 383

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLL--PKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                             N +  +++  L+   K   P+   Y +L++G       +  +
Sbjct: 384 -----------------ENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAM 426

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M+ +     HPD  TY  ++ +L   G +  A  +L EM   G   N ITYN L+
Sbjct: 427 ELYKEMKTK---GCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLI 483

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C+  +I +A+E+  +M +   +  + V+YN LIDG    +    A    ++M   G+
Sbjct: 484 DGFCKNKRIAEAEEIFDQM-ELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P K +Y +L+  F  +   K A  +   M  D   + DIV +  L+ G C+ G VE A 
Sbjct: 543 RPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDG-CEPDIVTYGTLIAGLCKAGRVEAAT 601

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           +++  ++  G       Y  +   +   ++  EA+ L++E+ E+ E
Sbjct: 602 KLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAE 647



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 24/319 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +   P+   +  L+K      ++   + +   M   ED    PD  T+TT++   ++
Sbjct: 186 MVSRGIRPDVSTFNILIKALCRAHQIRPAILL---MEEMEDFGLLPDEKTFTTIMQGFIE 242

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G++D A +V  +M   G     +T N+L+ G+C++ +I++A   + EM+      PD  
Sbjct: 243 EGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKY 302

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++N+L++G         AL   + M   G  P   +Y +L+       +   A KV ++M
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQM 362

Query: 384 L-RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           + RD     + V +N ++   C+   VEEA ++   +   G  P+V TY SL  G+ L+R
Sbjct: 363 IERD--CSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSR 420

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD-ICVRAAFFRKALEI 501
               A+ L+KE+K +                   PDE   + L D +C R    ++AL +
Sbjct: 421 NHTVAMELYKEMKTK----------------GCHPDEFTYNMLIDSLCFRGK-LQEALNL 463

Query: 502 VACMEEHGIPPNKTKYKKI 520
           +  ME  G   N   Y  +
Sbjct: 464 LKEMEVSGCARNVITYNTL 482


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 218/497 (43%), Gaps = 50/497 (10%)

Query: 30  ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
           E  +LFD  V  +     P  +   + DT  YN +LN      K K    ++ +M   G 
Sbjct: 120 EGQQLFDDAVDLILNQLQP--LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGI 177

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           KPDV+T+N ++K   RA +    V +LE +   G+    TTF +L+  +V  G +E A  
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           +   M E      K+   + +  Y     G  +D     ++ + +              F
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCK--LGRVEDALGYIQQEIADG-------------F 282

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   Y T + G      V   ++++  M ++      PD  TY  VV+ L K G ++ 
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE---GHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A+ +L +M   G   +  T+N L+   C   ++++A +L R++     + PDV ++NILI
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG-VSPDVYTFNILI 398

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD--- 386
           +    + D   AL  F EM+  G  P +++Y TL+    L S  KL   +  ++L+D   
Sbjct: 399 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID--NLCSLGKLGKAL--DLLKDMES 454

Query: 387 ---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
              PR     + +N +++G C+   +EEA+ + ++M   G   N  T+ +L +G+   +K
Sbjct: 455 TGCPR---STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A  L  ++                +   L+P+    +++     +    +KA +I+ 
Sbjct: 512 IDDAFGLINQM----------------ISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 504 CMEEHGIPPNKTKYKKI 520
            M  +G   +   Y  +
Sbjct: 556 TMTANGFEVDVVTYGTL 572



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 176/422 (41%), Gaps = 45/422 (10%)

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENEGDDDDD---- 184
            ++ ++      G L++ + +V  MR EG +    ++    L+ Y  +   DD  D    
Sbjct: 76  VYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSF-LDSYEGQQLFDDAVDLILN 134

Query: 185 ----------DEVFEKLLPNSINPSSEPPLLPKTFA--------PNSRIYTTLMKGYMNE 226
                     D V    L N +   S+  LL   ++        P+   + TLMK     
Sbjct: 135 QLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRA 194

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            +V   V ML  M  +      PD  T+TT++   V+ GS++ A +V A M  +G  A +
Sbjct: 195 HQVRTAVLMLEEMSSR---GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +T N+L+ GYC+  +++ A   +++   D   EPD ++YN  ++G    D    AL   +
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADG-FEPDQITYNTFVNGLCQNDHVGHALKVMD 310

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M   G  P   +Y  ++     + Q + A  + ++M+ D     DI  +N L+   C  
Sbjct: 311 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV-DRGCLPDITTFNTLIAALCTG 369

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
             +EEA  +  ++   G  P+V T+  L N +     P  AL L++E+K           
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKN---------- 419

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
                     PDE   + L D         KAL+++  ME  G P +   Y  I   +  
Sbjct: 420 ------SGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 527 RM 528
           +M
Sbjct: 474 KM 475



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 191/462 (41%), Gaps = 48/462 (10%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           +I    +PD   YN  +N           L++ D M + G  PDV TYN+++    +  +
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 +L ++++ G    +TTF +L+AA      LE              +   + R++
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLE--------------EALDLARQV 382

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
            ++  S          D     +L N++    +P L  + F         P+   Y TL+
Sbjct: 383 TVKGVSP---------DVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
               + G++   + +L  M   E        +TY T++  L K   ++ A +V  +M   
Sbjct: 434 DNLCSLGKLGKALDLLKDM---ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ 490

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  N IT+N L+ G C+  +ID A  L+ +M  +  ++P+ ++YN ++  +    D   
Sbjct: 491 GISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEG-LQPNNITYNSILTHYCKQGDIKK 549

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A      M A G     ++Y TL+     + + ++A KV   M R   ++    A+N ++
Sbjct: 550 AADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGM-RIKGMRPTPKAYNPVL 608

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +   R   + +A  +   M E G  P+  TY  +  G+     P         IKE  + 
Sbjct: 609 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGP---------IKEAFDF 659

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
             E V  D    P       L + L ++ +   F R A+EI+
Sbjct: 660 MLEMV--DKGFIPEFSSFRMLAEGLLNLGMDDYFIR-AIEII 698



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 41/253 (16%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR------------- 279
           +RML A   ++D A  P+   Y  ++  L   G++D  + ++AEM R             
Sbjct: 58  LRMLNAALARDDFAPGPE--VYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSF 115

Query: 280 ------------------------IGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
                                    G+ A+ + YN LL    +  ++   + +  EM   
Sbjct: 116 LDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGAR 175

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             I+PDVV++N L+           A+    EM +RG+AP + ++TTLM+ F      + 
Sbjct: 176 G-IKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEA 234

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A +V   ML +       V  N+L+ GYC++G VE+A   I++   +GF P+  TY +  
Sbjct: 235 ALRVKARML-EMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFV 293

Query: 436 NGISLARKPGEAL 448
           NG+      G AL
Sbjct: 294 NGLCQNDHVGHAL 306


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 227/502 (45%), Gaps = 58/502 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  ++    + G+  + L L D M   G +P V+TY V+++   +++     + V
Sbjct: 174 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 233

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G T  + T+  ++      G ++ A       RE    +     + D   Y++
Sbjct: 234 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDA-------REFLNRLSSYGFQPDTVSYTT 286

Query: 176 ENEGDD-----DDDDEVFEKLLPNSINPSSEP-PLLPKTF-------------------- 209
             +G       +D +E+F +++  +  P+     +L + F                    
Sbjct: 287 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 346

Query: 210 -APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            A N+ +   ++     +GRV D  + L  M         PD ++YTTV+  L +A   +
Sbjct: 347 CAANTTLCNIVINTICKQGRVDDAFQFLNNM---GSYGCSPDTISYTTVLKGLCRAERWE 403

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+++L EM R   P N +T+N  +   CQ+  I++A  L+ +M++    E ++V+YN L
Sbjct: 404 DAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG-CEVNIVTYNAL 462

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ++GF +      AL  F  M  +   P  I+YTTL+     + +   A ++  EML+   
Sbjct: 463 VNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKD- 518

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              ++V +N+LV  +C+ GL++EA  ++E+M E+G  PN+ TY +L +GI+      EAL
Sbjct: 519 CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEAL 578

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L   +         GV+          PD     ++  +  R     +A+++   +++ 
Sbjct: 579 ELLHGL------VSNGVS----------PDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 622

Query: 509 GIPPNKTKYKKIYVEMHSRMFT 530
           G+ P    Y KI + +  R  T
Sbjct: 623 GMRPKAVIYNKILLALCKRCNT 644



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 21/311 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP++  YT +++G  + GRV + + +L  M  +      P  VTYT ++ A+ K+    +
Sbjct: 173 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR---GCQPSVVTYTVLLEAVCKSTGFGQ 229

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +VL EM   G   N +TYN+++ G C++ ++D A+E L  ++     +PD VSY  ++
Sbjct: 230 AMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG-FQPDTVSYTTVL 288

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G             F EM  +   P ++++  L++ F      + A +V ++M      
Sbjct: 289 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM-SGHGC 347

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             +    N+++   C+ G V++A + +  M   G  P+  +Y ++  G+  A +      
Sbjct: 348 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAER------ 401

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            W++ K   E+ KE V  +        P+E   +    I  +     +A  ++  M EHG
Sbjct: 402 -WEDAK---ELLKEMVRKNC------PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 451

Query: 510 IPPNKTKYKKI 520
              N   Y  +
Sbjct: 452 CEVNIVTYNAL 462



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 165/383 (43%), Gaps = 58/383 (15%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T   N V+N     G+     Q  + M  +G  PD ++Y  ++K   RA R      +L
Sbjct: 350 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 409

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++         TF + +      G +E A  +++ M E   +V               
Sbjct: 410 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV--------------- 454

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                              N   Y  L+ G+  +GRV   + + 
Sbjct: 455 -----------------------------------NIVTYNALVNGFCVQGRVDSALELF 479

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            +M         P+ +TYTT+++ L  A  +D A ++LAEM +     N +T+N+L+  +
Sbjct: 480 YSM------PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 533

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQ+  +D+A EL+ +M +     P++++YN L+DG     +S  AL   + + + G++P 
Sbjct: 534 CQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPD 592

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y++++   +   + + A K+F  +++D  ++   V +N ++   C+    + A    
Sbjct: 593 IVTYSSIIGVLSREDRVEEAIKMF-HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFF 651

Query: 417 ERMKENGFYPNVATYGSLANGIS 439
             M  NG  PN  TY +L  G++
Sbjct: 652 AYMVSNGCMPNELTYITLIEGLA 674



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 21/275 (7%)

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R       PD    T ++  L + G    A +VL    R G   +   YN L+ GYC+  
Sbjct: 99  RATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYG 158

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q+D A+ L+  M     + PD  +Y  +I G         AL+  ++M  RG  P+ ++Y
Sbjct: 159 QLDAARRLIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTY 214

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T L++A   S+    A +V DEM R      +IV +N+++ G CR G V++A+  + R+ 
Sbjct: 215 TVLLEAVCKSTGFGQAMEVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLS 273

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             GF P+  +Y ++  G+  A++  +   L+ E+ E+                   P+E 
Sbjct: 274 SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEK----------------NCMPNEV 317

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
             D L     R     +A++++  M  HG   N T
Sbjct: 318 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTT 352



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 27/270 (10%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   YNA++N     G+    L+LF  M     KP+ +TY  ++     A R      +L
Sbjct: 455 NIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELL 511

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             +L+      + TF  LV+ +   G + E  E + Q M  G           +L  Y++
Sbjct: 512 AEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTP--------NLITYNT 563

Query: 176 ENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +G   D + +E  E L            L+    +P+   Y++++     E RV + +
Sbjct: 564 LLDGITKDCNSEEALELL----------HGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 613

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +M   +   +D    P  V Y  ++ AL K  + D A    A M   G   N +TY  L+
Sbjct: 614 KMFHIV---QDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 670

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           +G   +  + + ++LLRE+     +  +++
Sbjct: 671 EGLANEDFLKETRDLLRELCSRGVLNKNLL 700



 Score = 38.5 bits (88), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 77/185 (41%), Gaps = 17/185 (9%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D  P+   +N +++     G   + ++L +QM E G  P+++TYN ++    +       
Sbjct: 518 DCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEA 577

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLE 171
           + +L  ++  G++  + T+ S++        +E A  +   +++ G R    I  ++ L 
Sbjct: 578 LELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLA 637

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                N    D   + F  ++ N                PN   Y TL++G  NE  + +
Sbjct: 638 LCKRCN---TDGAIDFFAYMVSNGC-------------MPNELTYITLIEGLANEDFLKE 681

Query: 232 TVRML 236
           T  +L
Sbjct: 682 TRDLL 686


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 188/402 (46%), Gaps = 20/402 (4%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +Y  V+N     G   K    + +M + G  PDV+TYN +I    +A      +
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM 251

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +++ G+     T+ S++  Y   G  + A   ++ MR    +   +   L L DY
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL-LMDY 310

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +N G   +  ++F+ +    + P                 Y TL++GY  +G + +  
Sbjct: 311 LCKN-GRCMEARKIFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMH 356

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M R   N  HPDH  ++ ++ A    G +D+A  V ++M + G+  N +TY  ++
Sbjct: 357 GLLDLMVR---NGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+  +++ A     +M D+  + P  + YN LI G    +    A     EM  RGI
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               I + +++ +     +   + K+F+ M+R   VK +++ +N L+ GYC  G ++EA 
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKMDEAM 531

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +++  M   G  PN  TY +L NG     +  +AL+L+KE++
Sbjct: 532 KLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEME 573



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/518 (20%), Positives = 235/518 (45%), Gaps = 49/518 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G LP V  ++++++ L  +      +++++ + +VK           +   PD   
Sbjct: 222 MLDRGILPDVVTYNSIIAALCKA--QAMDKAMEVLNTMVK-----------NGVMPDCMT 268

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++L+   + G+PK+ +    +M   G +PDV+TY++++    +  R      + + + 
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+   +TT+ +L+  Y   G L     ++  M          +  + +  Y+  N+G 
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA--NQGK 386

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D    VF K+    +NP             N+  Y  ++      GRV D +     M 
Sbjct: 387 VDQAMLVFSKMRQQGLNP-------------NAVTYGAVIGILCKSGRVEDAMLYFEQMI 433

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              D    P ++ Y +++  L      +RA +++ EM   G+  N I +N ++  +C++ 
Sbjct: 434 ---DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ ++++L  E+     ++P+V++YN LI+G+ L      A+   + M + G+ P  ++Y
Sbjct: 491 RVIESEKLF-ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           +TL+  +   S+ + A  +F EM     V  DI+ +N++++G  +      AK +  R+ 
Sbjct: 550 STLINGYCKISRMEDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           E+G    ++TY  + +G+   +   +AL +++ +   C +              LK +  
Sbjct: 609 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL---CLMD-------------LKLEAR 652

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
             + + D  ++     +A ++      +G+ PN   Y+
Sbjct: 653 TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR 690



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 188/450 (41%), Gaps = 70/450 (15%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    PD+ TY ++I  C RA R  L    L  +++ G  +    
Sbjct: 65  PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIA 124

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+                       + +C   R  D  D              V  +
Sbjct: 125 FTPLL-----------------------KGLCADKRTSDAMDI-------------VLRR 148

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +        +E   +P  F+     Y  L+KG  +E R  + + +L  M       S PD
Sbjct: 149 M--------TELGCIPNVFS-----YNILLKGLCDENRSQEALELLHMMADDRGGGSPPD 195

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            V+YTTV++   K G  D+A     EM   G+  + +TYN ++   C+   +DKA E+L 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLN 255

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
            M  +  + PD ++YN ++ G+        A+ F  +MR+ G+ P  ++Y+ LM     +
Sbjct: 256 TMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
            +   A K+FD M +   +K +I  +  L++GY   G + E   +++ M  NG +P+   
Sbjct: 315 GRCMEARKIFDSMTKRG-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           +  L    +   K  +A+L++ ++++      +G+N          P+     A+  I  
Sbjct: 374 FSILICAYANQGKVDQAMLVFSKMRQ------QGLN----------PNAVTYGAVIGILC 417

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++     A+     M + G+ P    Y  +
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 186/441 (42%), Gaps = 74/441 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P +  + T++   A  G    VE   L D++V+           +   PD   
Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKG--ALVEMHGLLDLMVR-----------NGIHPDHYV 373

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++ ++ A AN GK  + + +F +M + G  P+ +TY  +I +  ++ R    +   E+++
Sbjct: 374 FSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G++     + SL+         E AE ++  M +  R +C      +    S   EG 
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHCKEGR 491

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++FE ++   + P             N   Y TL+ GY   G++ + +++L  M 
Sbjct: 492 VIESEKLFELMVRIGVKP-------------NVITYNTLINGYCLAGKMDEAMKLLSGMV 538

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   P+ VTY+T+++   K   M+ A  +  EM   GV  + ITYNI+L+G  Q  
Sbjct: 539 SV---GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTK 357
           +   AKEL   + +    + ++ +YNI++ G     L DD   AL  F  +         
Sbjct: 596 RTAAAKELYVRITESGT-QIELSTYNIILHGLCKNKLTDD---ALQMFQNL--------- 642

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
                LM                        +K++   +N++++   ++G  +EAK +  
Sbjct: 643 ----CLMD-----------------------LKLEARTFNIMIDALLKVGRNDEAKDLFV 675

Query: 418 RMKENGFYPNVATYGSLANGI 438
               NG  PN  TY  +A  I
Sbjct: 676 AFSSNGLVPNYWTYRLMAENI 696



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 31/301 (10%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R   +   PD  TY  ++    +AG +D     L  + + G   + I +  LLKG C 
Sbjct: 75  MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134

Query: 299 QLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---RARGIA 354
             +   A ++ LR M +   I P+V SYNIL+ G    + S  AL   + M   R  G  
Sbjct: 135 DKRTSDAMDIVLRRMTELGCI-PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSP 193

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  +SYTT++  F        A   + EML D  +  D+V +N ++   C+   +++A  
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEML-DRGILPDVVTYNSIIAALCKAQAMDKAME 252

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M +NG  P+  TY S+ +G   + +P EA+   K++      + +GV         
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM------RSDGV--------- 297

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------KKIYVEMH 525
            +PD      L D   +     +A +I   M + G+ P  T Y         K   VEMH
Sbjct: 298 -EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 526 S 526
            
Sbjct: 357 G 357



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 120/280 (42%), Gaps = 41/280 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G  P+V  ++T+++    +G     E++KL   +V               KP+T  
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMD--EAMKLLSGMVS-----------VGLKPNTVT 548

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++N    + + +  L LF +M   G  PD++TYN++++   +  R      +  RI 
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE-- 178
           E G  + ++T+  ++    G    ++ +  +Q      +++C +  +L+   ++   +  
Sbjct: 609 ESGTQIELSTYNIILH---GLCKNKLTDDALQMF----QNLCLMDLKLEARTFNIMIDAL 661

Query: 179 ---GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G +D+  ++F     N +              PN   Y  + +  + +G + +  ++
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGL-------------VPNYWTYRLMAENIIGQGLLEELDQL 708

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
             +M   EDN    D      +V  L++ G + RA   L+
Sbjct: 709 FLSM---EDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 217/497 (43%), Gaps = 50/497 (10%)

Query: 30  ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
           E  +LFD  V  +     P  +   + DT  YN +LN      K K    ++ +M   G 
Sbjct: 28  EGQQLFDDAVDLILNQLQP--LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGI 85

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           KPDV+T+N ++K   RA +    V +LE +   G+    TTF +L+  +V  G +E A  
Sbjct: 86  KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 145

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           +   M E      K+   + +  Y      +D             ++    +   +   F
Sbjct: 146 VKARMLEMGCSATKVTVNVLINGYCKLGRVED-------------ALGYIQQE--IADGF 190

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   Y T + G      V   ++++  M ++      PD  TY  VV+ L K G ++ 
Sbjct: 191 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE---GHDPDVFTYNIVVNCLCKNGQLEE 247

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A+ +L +M   G   +  T+N L+   C   ++++A +L R++     + PDV ++NILI
Sbjct: 248 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG-VSPDVYTFNILI 306

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD--- 386
           +    + D   AL  F EM+  G  P +++Y TL+    L S  KL   +  ++L+D   
Sbjct: 307 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID--NLCSLGKLGKAL--DLLKDMES 362

Query: 387 ---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
              PR     + +N +++G C+   +EEA+ + ++M   G   N  T+ +L +G+   +K
Sbjct: 363 TGCPR---STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 419

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A  L  ++                +   L+P+    +++     +    +KA +I+ 
Sbjct: 420 IDDAFELINQM----------------ISEGLQPNNITYNSILTHYCKQGDIKKAADILE 463

Query: 504 CMEEHGIPPNKTKYKKI 520
            M  +G   +   Y  +
Sbjct: 464 TMTANGFEVDVVTYGTL 480



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 30/353 (8%)

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFA--------PNSRIYTTLMKGYMNEGRVSDTVRM 235
           D  V+  LL N +   S+  LL   ++        P+   + TLMK      +V   V M
Sbjct: 53  DTVVYNHLL-NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLM 111

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  +      PD  T+TT++   V+ GS++ A +V A M  +G  A ++T N+L+ G
Sbjct: 112 LEEMSSR---GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+  +++ A   +++   D   EPD ++YN  ++G    D    AL   + M   G  P
Sbjct: 169 YCKLGRVEDALGYIQQEIADG-FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP 227

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +Y  ++     + Q + A  + ++M+ D     DI  +N L+   C    +EEA  +
Sbjct: 228 DVFTYNIVVNCLCKNGQLEEAKGILNQMV-DRGCLPDITTFNTLIAALCTGNRLEEALDL 286

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
             ++   G  P+V T+  L N +     P  AL L++E+K                    
Sbjct: 287 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKN----------------SGC 330

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
            PDE   + L D         KAL+++  ME  G P +   Y  I   +  +M
Sbjct: 331 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 383



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 192/462 (41%), Gaps = 48/462 (10%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           +I    +PD   YN  +N           L++ D M + G  PDV TYN+++    +  +
Sbjct: 185 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 244

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 +L ++++ G    +TTF +L+AA      LE              +   + R++
Sbjct: 245 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLE--------------EALDLARQV 290

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
            ++  S          D     +L N++    +P L  + F         P+   Y TL+
Sbjct: 291 TVKGVSP---------DVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI 341

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
               + G++   + +L  M   E        +TY T++  L K   ++ A +V  +M   
Sbjct: 342 DNLCSLGKLGKALDLLKDM---ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ 398

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  N IT+N L+ G C+  +ID A EL+ +M  +  ++P+ ++YN ++  +    D   
Sbjct: 399 GISRNAITFNTLIDGLCKDKKIDDAFELINQMISEG-LQPNNITYNSILTHYCKQGDIKK 457

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A      M A G     ++Y TL+     + + ++A KV   M R   ++    A+N ++
Sbjct: 458 AADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGM-RIKGMRPTPKAYNPVL 516

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +   R   + +A  +   M E G  P+  TY  +  G+     P         IKE  + 
Sbjct: 517 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGP---------IKEAFDF 567

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
             E V  D    P       L + L ++ +   F R A+EI+
Sbjct: 568 MLEMV--DKGFIPEFSSFRMLAEGLLNLGMDDYFIR-AIEII 606


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/521 (23%), Positives = 223/521 (42%), Gaps = 86/521 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ GY P++   S+++        +G   S ++ + V        D   V+  +P+T  
Sbjct: 142 MMKLGYEPNIVTLSSLL--------NGYCHSKRISEAVA-----LVDQMFVTGYQPNTVT 188

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           +N +++      K  + + L D+M   G +PD++TY V++  LC R              
Sbjct: 189 FNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR-------------- 234

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
                                 GD ++A  ++  M +G+ +   +I    ++        
Sbjct: 235 ----------------------GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           DD             ++N   E  +  K   PN   Y++L+    N GR SD  R+L  M
Sbjct: 273 DD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             ++ N   PD  T++ ++ A VK G +  A ++  EM +  +  + +TY+ L+ G+C  
Sbjct: 318 IERKIN---PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++D+AK++   M       PDVV+YN LI GF         +  F EM  RG+    ++
Sbjct: 375 DRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L++    +    +A ++F EM+ D  V  +I+ +N L++G C+ G +E+A  + E +
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           + +   P + TY  +  G+  A K  +   L+      C +  +GV          KPD 
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF------CNLSLKGV----------KPDV 536

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              + +     R     +A  +   M+E G  PN   Y  +
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTL 577



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 183/436 (41%), Gaps = 42/436 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L+A A + K    + L +QM   G   +  TY+++I    R S+  L + V
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDL 170
           L +++++G    + T  SL+  Y     +  A  +V  M     +        +I  L L
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            + +SE              L+   +    +P L+          Y  ++ G    G   
Sbjct: 199 HNKASEAMA-----------LIDRMVAKGCQPDLVT---------YGVVVNGLCKRG--- 235

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           DT      + + E     P  + Y T++  L K   MD A  +  EM   G+  N +TY+
Sbjct: 236 DTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYS 295

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+   C   +   A  LL +M  + KI PDV +++ LID F+       A   ++EM  
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMI-ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           R I P+ ++Y++L+  F +  +   A ++F+ M+       D+V +N L++G+C+   VE
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV-SKHCFPDVVTYNTLIKGFCKYKRVE 413

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           E   +   M + G   N  TY  L  G+  A     A  ++KE+                
Sbjct: 414 EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM------------VSDG 461

Query: 471 LPPPLKPDEELLDALA 486
           +PP +     LLD L 
Sbjct: 462 VPPNIMTYNTLLDGLC 477



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 160/407 (39%), Gaps = 79/407 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +  +  VV+ L   GD          D+    + K     +    +P    
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDT---------DLAFNLLNKMEQGKL----EPGVLI 258

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++           L LF +M   G +P+V+TY+ +I       R      +L  ++
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD--LEDYSSENE 178
           E  I   + TF +L+ A+V  G L  AE +   M         + R +D  +  YSS   
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM---------VKRSIDPSIVTYSSLIN 369

Query: 179 G-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           G       D+  ++FE              ++ K   P+   Y TL+KG+    RV + +
Sbjct: 370 GFCMHDRLDEAKQMFE-------------FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +    R         + VTY  ++  L +AG  D A+++  EM   GVP N +TYN LL
Sbjct: 417 EVF---REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473

Query: 294 KGYCQQLQIDKA-------------------KELLREMADDAKIE--------------- 319
            G C+  +++KA                     ++  M    K+E               
Sbjct: 474 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           PDVV+YN +I GF        A   F EM+  G  P    Y TL++A
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 122/239 (51%), Gaps = 5/239 (2%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L +  ++E ++ D V + G M +       P  + ++ ++SA+ K    D    +  +M 
Sbjct: 52  LSRNGLSELKLDDAVALFGEMVKSR---PFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ 108

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
            +G+P N  TY+IL+  +C++ Q+  A  +L +M      EP++V+ + L++G+      
Sbjct: 109 NLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMM-KLGYEPNIVTLSSLLNGYCHSKRI 167

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
           + A+   ++M   G  P  +++ TL+    L ++   A  + D M+     + D+V + +
Sbjct: 168 SEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-CQPDLVTYGV 226

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +V G C+ G  + A  ++ +M++    P V  Y ++ +G+   +   +AL L+KE++ +
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 110/245 (44%), Gaps = 27/245 (11%)

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
            +L++D A  L  EM   ++  P ++ ++ L+     ++     ++   +M+  GI    
Sbjct: 58  SELKLDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            +Y+ L+  F   SQ  LA  V  +M++   +P    +IV  + L+ GYC    + EA  
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISEAVA 172

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCE-------VKKEGV- 465
           ++++M   G+ PN  T+ +L +G+ L  K  EA+ L+ + + + C+       V   G+ 
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLC 232

Query: 466 -NADSDLP---------PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
              D+DL            L+P   + + + D   +      AL +   ME  GI PN  
Sbjct: 233 KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV 292

Query: 516 KYKKI 520
            Y  +
Sbjct: 293 TYSSL 297



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P++  ++T++  L     +G +E   +    ++R          S  +P    
Sbjct: 457 MVSDGVPPNIMTYNTLLDGLC---KNGKLEKAMVVFEYLQR----------SKMEPTIYT 503

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++      GK +    LF  +   G KPDV+ YN MI    R   K     + + + 
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           E G       + +L+ A +  GD E +  +++ MR
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 218/497 (43%), Gaps = 50/497 (10%)

Query: 30  ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
           E  +LFD  V  +     P  +   + DT  YN +LN      K K    ++ +M   G 
Sbjct: 120 EGQQLFDDAVDLILNQLQP--LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGI 177

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           KPDV+T+N ++K   RA +    V +LE +   G+    TTF +L+  +V  G +E A  
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           +   M E      K+   + +  Y     G  +D     ++ + +              F
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCK--LGRVEDALGYIQQEIADG-------------F 282

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   Y T + G      V   ++++  M ++      PD  TY  VV+ L K G ++ 
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE---GHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A+ +L +M   G   +  T+N L+   C   ++++A +L R++     + PDV ++NILI
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG-VSPDVYTFNILI 398

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD--- 386
           +    + D   AL  F EM+  G  P +++Y TL+    L S  KL   +  ++L+D   
Sbjct: 399 NALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID--NLCSLGKLGKAL--DLLKDMES 454

Query: 387 ---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
              PR     + +N +++G C+   +EEA+ + ++M   G   N  T+ +L +G+   +K
Sbjct: 455 TGCPR---STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A  L  ++                +   L+P+    +++     +    +KA +I+ 
Sbjct: 512 IDDAFELINQM----------------ISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 504 CMEEHGIPPNKTKYKKI 520
            M  +G   +   Y  +
Sbjct: 556 TMTANGFEVDVVTYGTL 572



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 176/422 (41%), Gaps = 45/422 (10%)

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENEGDDDDD---- 184
            ++ ++      G L++ + +V  MR EG +    ++    L+ Y  +   DD  D    
Sbjct: 76  VYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSF-LDSYEGQQLFDDAVDLILN 134

Query: 185 ----------DEVFEKLLPNSINPSSEPPLLPKTFA--------PNSRIYTTLMKGYMNE 226
                     D V    L N +   S+  LL   ++        P+   + TLMK     
Sbjct: 135 QLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRA 194

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            +V   V ML  M  +      PD  T+TT++   V+ GS++ A +V A M  +G  A +
Sbjct: 195 HQVRTAVIMLEEMSSR---GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +T N+L+ GYC+  +++ A   +++   D   EPD ++YN  ++G    D    AL   +
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADG-FEPDQITYNTFVNGLCQNDHVGHALKVMD 310

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M   G  P   +Y  ++     + Q + A  + ++M+ D     DI  +N L+   C  
Sbjct: 311 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV-DRGCLPDITTFNTLIAALCTG 369

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
             +EEA  +  ++   G  P+V T+  L N +     P  AL L++E+K           
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKN---------- 419

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
                     PDE   + L D         KAL+++  ME  G P +   Y  I   +  
Sbjct: 420 ------SGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 527 RM 528
           +M
Sbjct: 474 KM 475



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 192/462 (41%), Gaps = 48/462 (10%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           +I    +PD   YN  +N           L++ D M + G  PDV TYN+++    +  +
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 +L ++++ G    +TTF +L+AA      LE              +   + R++
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLE--------------EALDLARQV 382

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
            ++  S          D     +L N++    +P L  + F         P+   Y TL+
Sbjct: 383 TVKGVSP---------DVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
               + G++   + +L  M   E        +TY T++  L K   ++ A +V  +M   
Sbjct: 434 DNLCSLGKLGKALDLLKDM---ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQ 490

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  N IT+N L+ G C+  +ID A EL+ +M  +  ++P+ ++YN ++  +    D   
Sbjct: 491 GISRNAITFNTLIDGLCKDKKIDDAFELINQMISEG-LQPNNITYNSILTHYCKQGDIKK 549

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A      M A G     ++Y TL+     + + ++A KV   M R   ++    A+N ++
Sbjct: 550 AADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGM-RIKGMRPTPKAYNPVL 608

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +   R   + +A  +   M E G  P+  TY  +  G+     P         IKE  + 
Sbjct: 609 QSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGP---------IKEAFDF 659

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
             E V  D    P       L + L ++ +   F R A+EI+
Sbjct: 660 MLEMV--DKGFIPEFSSFRMLAEGLLNLGMDDYFIR-AIEII 698


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 227/502 (45%), Gaps = 58/502 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  ++    + G+  + L L D M   G +P V+TY V+++   +++     + V
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 202

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G T  + T+  ++      G ++ A       RE    +     + D   Y++
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDA-------REFLNRLSSYGFQPDTVSYTT 255

Query: 176 ENEGDD-----DDDDEVFEKLLPNSINPSSEP-PLLPKTF-------------------- 209
             +G       +D +E+F +++  +  P+     +L + F                    
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315

Query: 210 -APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            A N+ +   ++     +GRV D  + L  M         PD ++YTTV+  L +A   +
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY---GCSPDTISYTTVLKGLCRAERWE 372

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+++L EM R   P N +T+N  +   CQ+  I++A  L+ +M++    E ++V+YN L
Sbjct: 373 DAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG-CEVNIVTYNAL 431

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ++GF +      AL  F  M  +   P  I+YTTL+     + +   A ++  EML+   
Sbjct: 432 VNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKD- 487

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              ++V +N+LV  +C+ GL++EA  ++E+M E+G  PN+ TY +L +GI+      EAL
Sbjct: 488 CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEAL 547

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L   +         GV+          PD     ++  +  R     +A+++   +++ 
Sbjct: 548 ELLHGL------VSNGVS----------PDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591

Query: 509 GIPPNKTKYKKIYVEMHSRMFT 530
           G+ P    Y KI + +  R  T
Sbjct: 592 GMRPKAVIYNKILLALCKRCNT 613



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 21/311 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP++  YT +++G  + GRV + + +L  M  +      P  VTYT ++ A+ K+    +
Sbjct: 142 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR---GCQPSVVTYTVLLEAVCKSTGFGQ 198

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +VL EM   G   N +TYN+++ G C++ ++D A+E L  ++     +PD VSY  ++
Sbjct: 199 AMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG-FQPDTVSYTTVL 257

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G             F EM  +   P ++++  L++ F      + A +V ++M      
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM-SGHGC 316

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             +    N+++   C+ G V++A + +  M   G  P+  +Y ++  G+  A +      
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAER------ 370

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            W++ K   E+ KE V  +        P+E   +    I  +     +A  ++  M EHG
Sbjct: 371 -WEDAK---ELLKEMVRKNC------PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420

Query: 510 IPPNKTKYKKI 520
              N   Y  +
Sbjct: 421 CEVNIVTYNAL 431



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 165/383 (43%), Gaps = 58/383 (15%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T   N V+N     G+     Q  + M  +G  PD ++Y  ++K   RA R      +L
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 378

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++         TF + +      G +E A  +++ M E   +V               
Sbjct: 379 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV--------------- 423

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                              N   Y  L+ G+  +GRV   + + 
Sbjct: 424 -----------------------------------NIVTYNALVNGFCVQGRVDSALELF 448

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            +M         P+ +TYTT+++ L  A  +D A ++LAEM +     N +T+N+L+  +
Sbjct: 449 YSM------PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQ+  +D+A EL+ +M +     P++++YN L+DG     +S  AL   + + + G++P 
Sbjct: 503 CQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPD 561

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y++++   +   + + A K+F  +++D  ++   V +N ++   C+    + A    
Sbjct: 562 IVTYSSIIGVLSREDRVEEAIKMF-HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFF 620

Query: 417 ERMKENGFYPNVATYGSLANGIS 439
             M  NG  PN  TY +L  G++
Sbjct: 621 AYMVSNGCMPNELTYITLIEGLA 643



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 21/275 (7%)

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R       PD    T ++  L + G    A +VL    R G   +   YN L+ GYC+  
Sbjct: 68  RATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYG 127

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q+D A+ L+  M     + PD  +Y  +I G         AL+  ++M  RG  P+ ++Y
Sbjct: 128 QLDAARRLIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTY 183

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T L++A   S+    A +V DEM R      +IV +N+++ G CR G V++A+  + R+ 
Sbjct: 184 TVLLEAVCKSTGFGQAMEVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLS 242

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             GF P+  +Y ++  G+  A++  +   L+ E+ E+                   P+E 
Sbjct: 243 SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEK----------------NCMPNEV 286

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
             D L     R     +A++++  M  HG   N T
Sbjct: 287 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTT 321



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 27/270 (10%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   YNA++N     G+    L+LF  M     KP+ +TY  ++     A R      +L
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELL 480

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             +L+      + TF  LV+ +   G + E  E + Q M  G           +L  Y++
Sbjct: 481 AEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTP--------NLITYNT 532

Query: 176 ENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +G   D + +E  E L            L+    +P+   Y++++     E RV + +
Sbjct: 533 LLDGITKDCNSEEALELL----------HGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 582

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +M   +   +D    P  V Y  ++ AL K  + D A    A M   G   N +TY  L+
Sbjct: 583 KMFHIV---QDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 639

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           +G   +  + + ++LLRE+     +  +++
Sbjct: 640 EGLANEDFLKETRDLLRELCSRGVLNKNLL 669


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/510 (24%), Positives = 223/510 (43%), Gaps = 77/510 (15%)

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
           RK  +    S   PDT AYNA+LN      + ++  +L ++M E G +PD  +YN ++  
Sbjct: 182 RKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVAC 241

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
              + +      +LE+++E      + T+ SL+  +     ++ AE +++ M  GRR   
Sbjct: 242 LCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV-GRRCAP 300

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
            +I    L    S  +    D   V E +    I             +P+   Y  L+ G
Sbjct: 301 TVITYTTLIGGFSRAD-RLADAYRVMEDMFKAGI-------------SPDLVTYNCLLDG 346

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
               G++ +   +L  M  ++     PD VTY+ +V+ L K G +D AR +L  M   G 
Sbjct: 347 LCKAGKLEEAHELLEVMVEKD---CAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGC 403

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N +T+N ++ G+C+  ++D+  ++L E+  +    PDVV+Y+ LIDG+   +    A 
Sbjct: 404 QPNLVTFNTMIDGFCKAGKVDEGHKVL-ELMKEVSCTPDVVTYSTLIDGYCKANRMQDAF 462

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR----------------- 385
                    GI+P K SY+++++    + + + A +V D M +                 
Sbjct: 463 AIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGL 516

Query: 386 ------DPRVKV-----------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                 D  +K+           ++  +++L+ G C+   VE+A  +++ M E G  P+V
Sbjct: 517 CDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDV 576

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKER-CEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           ATY SL +G     K   A   +K +++  CE                 PD+   + L  
Sbjct: 577 ATYTSLIDGFCKINKMDAAYQCFKTMRDSGCE-----------------PDKLAYNILIS 619

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              ++    KA+E++  M E G  P+   Y
Sbjct: 620 GFCQSGNVEKAIEVMQLMLEKGCNPDAATY 649



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 214/472 (45%), Gaps = 70/472 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P   +++TVV+ L  SG     E+ K+ +   K + K   PD+V+        
Sbjct: 223 MVEAGREPDTFSYNTVVACLCESGK--YEEAGKILE---KMIEKKCGPDVVT-------- 269

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++    + K  +  +L + M      P V+TY  +I   +RA R      V+E + 
Sbjct: 270 YNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMF 329

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--------------------GRRD 160
           + GI+  + T+  L+      G LE A  +++ M E                    G+ D
Sbjct: 330 KAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVD 389

Query: 161 VCKIIRELDLEDYSSEN-------------EGDDDDDDEVFEKLLPNSINPSSEPPLLPK 207
             +++ E+ LE     N              G  D+  +V E +   S  P         
Sbjct: 390 DARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTP--------- 440

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
               +   Y+TL+ GY    R+ D   +LG           PD  +Y++++  L   G +
Sbjct: 441 ----DVVTYSTLIDGYCKANRMQDAFAILGI---------SPDKASYSSMLEGLCSTGKV 487

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           + A++V+  MT+ G P     Y +++ G C   + D+A ++L+ M++    EP++ +Y+I
Sbjct: 488 EEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERG-CEPNLYTYSI 546

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI+G         A+   + M  +G  P   +YT+L+  F   ++   A + F  M RD 
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM-RDS 605

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             + D +A+N+L+ G+C+ G VE+A  +++ M E G  P+ ATY SL   ++
Sbjct: 606 GCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLT 657



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/478 (24%), Positives = 213/478 (44%), Gaps = 56/478 (11%)

Query: 47  DPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA 106
           D  I  D  PD A YN ++     +GK      +   M E    PDV+TY  +I  C + 
Sbjct: 116 DEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQT 175

Query: 107 SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
           +       ++E++ E G+T     + +L+        LE    +++ M E         R
Sbjct: 176 NALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAG-------R 228

Query: 167 ELDLEDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           E D   Y++        G  ++  ++ EK             ++ K   P+   Y +LM 
Sbjct: 229 EPDTFSYNTVVACLCESGKYEEAGKILEK-------------MIEKKCGPDVVTYNSLMD 275

Query: 222 GYMNEGRVSDTVRMLGAM--RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           G+    ++ +  R+L  M  RR       P  +TYTT++    +A  +  A +V+ +M +
Sbjct: 276 GFCKVSKMDEAERLLEDMVGRR-----CAPTVITYTTLIGGFSRADRLADAYRVMEDMFK 330

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G+  + +TYN LL G C+  ++++A ELL  M  +    PDVV+Y+IL++G   +    
Sbjct: 331 AGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMV-EKDCAPDVVTYSILVNGLCKLGKVD 389

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A      M  RG  P  +++ T++  F  + +    +KV  E++++     D+V ++ L
Sbjct: 390 DARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVL-ELMKEVSCTPDVVTYSTL 448

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           ++GYC+   +++A  I+      G  P+ A+Y S+  G+    K  EA    +E+ +   
Sbjct: 449 IDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEA----QEVMDL-- 496

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           + K+G       PP       ++  L D+        +AL+++  M E G  PN   Y
Sbjct: 497 MTKQGC------PPTSSHYALIIGGLCDV----ERGDEALKMLQVMSERGCEPNLYTY 544



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 128/539 (23%), Positives = 229/539 (42%), Gaps = 77/539 (14%)

Query: 28  PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           P+E    F        +FSDP     SKP  + Y A++   +  G  K  L++ ++M   
Sbjct: 5   PLEGYSFFR------ERFSDP-----SKPSNSTYGALITGFSRAGNSKMVLEIANEMLAR 53

Query: 88  GAKPDVLTYNVMIK-LCARASRKHLLVFVLER-----------ILEMGITLCM------- 128
              PDV+T+N ++K  C        L     +           IL  G+  C        
Sbjct: 54  RFSPDVITHNTILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQ 113

Query: 129 --------------TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
                           +  L+A     G ++ A  +++ M E R  V  +I    L    
Sbjct: 114 LLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLE-RSCVPDVITYTSLIVGC 172

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +    D+   ++ EK+         E  L P T A     Y  L+ G   + ++ +  +
Sbjct: 173 CQTNALDEAR-KLMEKM--------KESGLTPDTVA-----YNALLNGLCKQNQLEEVSK 218

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M    +    PD  +Y TVV+ L ++G  + A ++L +M       + +TYN L+ 
Sbjct: 219 LLEEMV---EAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMD 275

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C+  ++D+A+ LL +M    +  P V++Y  LI GF   D  A A     +M   GI+
Sbjct: 276 GFCKVSKMDEAERLLEDMVG-RRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGIS 334

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++Y  L+     + + + A+++  E++ +     D+V +++LV G C++G V++A+ 
Sbjct: 335 PDLVTYNCLLDGLCKAGKLEEAHELL-EVMVEKDCAPDVVTYSILVNGLCKLGKVDDARL 393

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEA---LLLWKEIKERCEV----------K 461
           ++E M E G  PN+ T+ ++ +G   A K  E    L L KE+    +V           
Sbjct: 394 LLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYC 453

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           K     D+     + PD+    ++ +         +A E++  M + G PP  + Y  I
Sbjct: 454 KANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALI 512


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 216/482 (44%), Gaps = 45/482 (9%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +P    Y  +L A        + + + D+M   G  P+++TYNV+I    R  R     
Sbjct: 183 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 242

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR-DVCKIIRELDLED 172
            +L R+   G       FQ  + +Y          T+++ +   RR D  K++    ++ 
Sbjct: 243 EILNRLSSYG-------FQPDIVSYT---------TVLKGLCAARRWDDVKVLFAEMVDK 286

Query: 173 YSSENEGDDDDDDEVFEK--LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
               NE   D     F +  ++  +I    +  +      PN+ +   ++     +GRV 
Sbjct: 287 KCVPNEVTFDMLVRFFCRGGMVERAIQVLQQ--MSQHGCTPNTTLCNIVINAICKQGRVD 344

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D    L  M     N   PD ++YTTV+  L +AG  + A+++L EM R   P N +T+N
Sbjct: 345 DAYDFLNNMGMYGCN---PDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFN 401

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
             +   CQ+  I++A +L+ E+  +      +V+YN L+ GF +      AL  FN +  
Sbjct: 402 TFICILCQKGLIEQAIKLI-ELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPC 460

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
               P  I+YTTL+     + +   A ++  EM++     ++ V +N+LV  +C+ G VE
Sbjct: 461 E---PNTITYTTLLTGLCHAERLDAAAELLAEMIQK-DCPLNAVTFNVLVSFFCQKGFVE 516

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           EA  ++ +M E+G  PN+ T+ +L +GI+      EAL L   +  +      GV+ D+ 
Sbjct: 517 EAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSK------GVSLDTI 570

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
                        ++ D+  R     +A++++  +++ G+ P    Y KI   +  R  T
Sbjct: 571 ----------TYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCET 620

Query: 531 SK 532
            +
Sbjct: 621 DQ 622



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+ G+  +GRV   + +   +         P+ +TYTT+++ L  A  +D A ++LA
Sbjct: 435 YNALVHGFCVQGRVDSALELFNNL------PCEPNTITYTTLLTGLCHAERLDAAAELLA 488

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM +   P N +T+N+L+  +CQ+  +++A EL+ +M +     P+++++N L+DG    
Sbjct: 489 EMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG-CTPNLITFNTLLDGITKD 547

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            +S  AL   + + ++G++   I+Y++++   +   + + A ++    ++D  ++  +  
Sbjct: 548 CNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQML-HAVQDMGMRPKVGM 606

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           +N ++   C+    ++A      M  NG  PN +TY  L  G++
Sbjct: 607 YNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLA 650



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 2/170 (1%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            R   + M + G   + +TY +LL+  C+     +A  +L EM       P++V+YN++I
Sbjct: 171 TRSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG-CTPNIVTYNVII 229

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G         A    N + + G  P  +SYTT++K    + +      +F EM+ D + 
Sbjct: 230 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-DKKC 288

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             + V ++MLV  +CR G+VE A +++++M ++G  PN      + N I 
Sbjct: 289 VPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAIC 338



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 136/362 (37%), Gaps = 55/362 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T   N V+NA    G+        + M  +G  PD ++Y  +++   RA R      +
Sbjct: 325 PNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKEL 384

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  ++         TF + +      G +E A  +++ M E    V  +     +  +  
Sbjct: 385 LPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCV 444

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +  G  D   E+F  L      P            PN+  YTTL+ G  +  R+     +
Sbjct: 445 Q--GRVDSALELFNNL------PCE----------PNTITYTTLLTGLCHAERLDAAAEL 486

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M +++      + VT+  +VS   + G ++ A +++ +M   G   N IT+N LL G
Sbjct: 487 LAEMIQKD---CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDG 543

Query: 296 YCQQLQIDKAKELLREMAD----------------------------------DAKIEPD 321
             +    ++A ELL  +                                    D  + P 
Sbjct: 544 ITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPK 603

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           V  YN ++       ++  A+ FF  M + G  P + +Y  L++  A     K A  V  
Sbjct: 604 VGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLS 663

Query: 382 EM 383
           E+
Sbjct: 664 EL 665


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/529 (23%), Positives = 235/529 (44%), Gaps = 60/529 (11%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P    ++ ++  L   G  G  +++ L D +++R           + +P    Y  +L A
Sbjct: 135 PDAYTYTPLIRGLCDRGRVG--DALSLLDDMLRR-----------ECQPSVVTYTVLLEA 181

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
                   + +++ D+M   G  P+++TYNV+I    R  R      +L R+   G    
Sbjct: 182 VCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYG---- 237

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSENEGDDDDDD 185
              FQ    +Y          T+++ +   +R  DV  +  E+ +E+    NE   D   
Sbjct: 238 ---FQPDTVSYT---------TVLKGLCAAKRWEDVEVLFCEM-VENNCVPNEVTFDMLV 284

Query: 186 EVFEK--LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             F +  ++  +I       +       N+ +   ++     +GRV D    L  M    
Sbjct: 285 RFFCRGGMVERAIEVLDR--MSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNM---G 339

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                PD ++YTTV+  L +AG  + A+++L EM R   P N +T+N  +   CQ+  ID
Sbjct: 340 SYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLID 399

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A  L+ +M +       +V+YN L++GF +      AL  FN +      P  I+YTTL
Sbjct: 400 QAILLIEQMPEYG-CSVGIVTYNALVNGFCVQGRVDSALELFNSLPCE---PNTITYTTL 455

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +     + +   A ++  EM+++    +++V +N+LV  +C+ G VEEA  ++++M E+G
Sbjct: 456 LTGLCHAERLDAAAELLAEMMQND-CPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHG 514

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PN+ T+ +L +GI+      EAL L   +  +      G++ D+              
Sbjct: 515 CTPNLITFNTLLDGITEDCNSEEALELLHGLVSK------GISLDTI----------TYS 558

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
           ++ D+  R     +A+++   +++ G+ P    Y KI   +  R  T +
Sbjct: 559 SIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDR 607



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 127/277 (45%), Gaps = 21/277 (7%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           + R       PD    T ++  L + G    A +VL      G P +   YN L+ GYC+
Sbjct: 58  VERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCR 117

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++D A+ L+  M     + PD  +Y  LI G         AL+  ++M  R   P+ +
Sbjct: 118 YGRLDAARRLIASM----PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVV 173

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +YT L++A   SS    A KV DEM R      +IV +N+++ G CR   V++A++I+ R
Sbjct: 174 TYTVLLEAVCKSSGFGQAMKVLDEM-RAKGCTPNIVTYNVIINGMCREDRVDDARQILNR 232

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           +   GF P+  +Y ++  G+  A++  +  +L+ E+ E   V                P+
Sbjct: 233 LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCV----------------PN 276

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           E   D L     R     +A+E++  M EHG   N T
Sbjct: 277 EVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTT 313



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 192/425 (45%), Gaps = 32/425 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PDT +Y  VL       + +    LF +M E    P+ +T++++++   R       + 
Sbjct: 239 QPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIE 298

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL+R+ E G T   T    ++ +    G ++ A   +  M         I     L+   
Sbjct: 299 VLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLC 358

Query: 175 SENEGDDDDDDEVFEKLL-----PNSINPSSEPPLLPKTFAPNSRI-------------- 215
               G  +D  E+  +++     PN +  ++   +L +    +  I              
Sbjct: 359 --RAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVG 416

Query: 216 ---YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  L+ G+  +GRV   + +  ++         P+ +TYTT+++ L  A  +D A +
Sbjct: 417 IVTYNALVNGFCVQGRVDSALELFNSL------PCEPNTITYTTLLTGLCHAERLDAAAE 470

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +LAEM +   P N +T+N+L+  +CQ+  +++A EL+++M +     P+++++N L+DG 
Sbjct: 471 LLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHG-CTPNLITFNTLLDGI 529

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
               +S  AL   + + ++GI+   I+Y++++   +   + + A ++F   ++D  ++  
Sbjct: 530 TEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMF-HAVQDMGMRPK 588

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
            V +N ++   C+    + A      M  N   PN +TY  L  G++      EA  +  
Sbjct: 589 AVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLS 648

Query: 453 EIKER 457
           E+  R
Sbjct: 649 ELCSR 653



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 118/266 (44%), Gaps = 25/266 (9%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YNA++N     G+    L+LF+ +     +P+ +TY  ++     A R      +L  +
Sbjct: 419 TYNALVNGFCVQGRVDSALELFNSLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEM 475

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++    L + TF  LV+ +   G +E A  +VQ M E     C      +L  +++  +G
Sbjct: 476 MQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHG---CTP----NLITFNTLLDG 528

Query: 180 --DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
             +D + +E  E L            L+ K  + ++  Y++++     E R+ + V+M  
Sbjct: 529 ITEDCNSEEALELL----------HGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFH 578

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           A+   +D    P  V Y  ++SAL K    DRA    A M       N  TY IL++G  
Sbjct: 579 AV---QDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLA 635

Query: 298 QQLQIDKAKELLREMADDAKIEPDVV 323
           ++  + +A+ +L E+     +   ++
Sbjct: 636 REGLLKEARYVLSELCSRGVLSKSLI 661


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 209/458 (45%), Gaps = 57/458 (12%)

Query: 31  SVKLFDVVVK---RVRKFSDP-DIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQ-L 80
           S  +FD+VVK   RV   +    IV+ +K     P   +YNA+L+A     +  K  + +
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGI 190

Query: 81  FDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV--LERILEMGITLCMTTFQSLVAA 137
           F +M E G  P+V TYN++I+  C   + +  L F   +ER    G    + T+ +++ A
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMER---NGCLPNVVTYNTIIDA 247

Query: 138 YVGFGDLEIAETIVQAM--------------------REGR-RDVCKIIRELDLEDYSSE 176
           Y     +  A  +++ M                    REG+ ++  +I+ E+    Y   
Sbjct: 248 YCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP- 306

Query: 177 NEGDDDDDDEVFEKLLPNSINPSS-------EPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                  D   F  L+    N  +          ++    +PN   YTTL+      G +
Sbjct: 307 -------DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           +  +  L  MR   D   HP+  TYTT++    + G + +A Q++ EM   G     ITY
Sbjct: 360 NRAMEFLDQMR---DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L+ G+C   +++ A  LL+EM +   I PDVVSY+ +I GF    +   A     EM 
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFI-PDVVSYSTIISGFCRNQELEKAFQLKVEMV 475

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           A+GI+P   +Y++L++      +      +F EML    +  D V +  L+  YC  G +
Sbjct: 476 AKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEML-SLGLPPDEVTYTSLINAYCIEGDL 534

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           ++A R+ + M + GF P++ TY  L NG +   +  EA
Sbjct: 535 DKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEA 572



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/470 (23%), Positives = 219/470 (46%), Gaps = 50/470 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G LP+V  ++T++         G  E+ KL  ++     K  +P+++S        
Sbjct: 229 MERNGCLPNVVTYNTIIDAYCKLRKIG--EAFKLLRLMA---LKGLNPNLIS-------- 275

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N     G+ K+  ++ ++M +    PD +T+N +I         H  + +   ++
Sbjct: 276 YNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMV 335

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEG 179
           + G++  + T+ +L+ +    G+L  A   +  MR+ G     +    L ++ +S +  G
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTL-IDGFSQQ--G 392

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                 ++ ++++ N              F P    Y  L+ G+   GR+ D     G +
Sbjct: 393 FLKQAYQIMKEMVENG-------------FTPTIITYNALINGHCILGRMEDAS---GLL 436

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +   +    PD V+Y+T++S   +   +++A Q+  EM   G+  +  TY+ L++G C+Q
Sbjct: 437 QEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQ 496

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +  +L +EM     + PD V+Y  LI+ + +  D   AL   +EM  +G +P  ++
Sbjct: 497 RRLGEVCDLFQEMLS-LGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVT 555

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE---------------GYC 404
           Y  L+  F   S+ K A ++  ++L +  V  +I  +N L++               G+C
Sbjct: 556 YNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEI-TYNTLIDNCNNLEFKSALALMKGFC 614

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             GL+ EA R++E M + G+  N   Y  + +G S      +A  L+KE+
Sbjct: 615 MKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM 664



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 179/383 (46%), Gaps = 40/383 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  ++N+    G   + ++  DQM + G  P+  TY  +I   ++         +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++ ++E G T  + T+ +L+  +   G +E A  ++Q M E  R         D+  YS+
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE--RGFIP-----DVVSYST 453

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   + +   EK     +       ++ K  +P+   Y++L++G   + R+ +   +
Sbjct: 454 IISGFCRNQE--LEKAFQLKV------EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M         PD VTYT++++A    G +D+A ++  EM + G   + +TYN+L+ G
Sbjct: 506 FQEMLSL---GLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           + +Q +  +AK LL ++  +  + P+ ++YN LID               N +  +    
Sbjct: 563 FNKQSRTKEAKRLLLKLLYEESV-PNEITYNTLIDN-------------CNNLEFK---- 604

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              S   LMK F +      A++V + ML+    K++   +N+++ G+ ++G +E+A  +
Sbjct: 605 ---SALALMKGFCMKGLMNEADRVLESMLQKG-YKLNEEVYNVIIHGHSKVGNIEKAYNL 660

Query: 416 IERMKENGFYPNVATYGSLANGI 438
            + M  +GF P+  T  +LA  +
Sbjct: 661 YKEMLHSGFAPHSVTIMALAKSL 683



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 124/269 (46%), Gaps = 19/269 (7%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKELLRE 311
            +  VV +  +   +++A  ++      G     ++YN +L    +  Q +  A+ + +E
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M +   + P+V +YNILI GF    +    L FF EM   G  P  ++Y T++ A+    
Sbjct: 194 MVESG-VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLR 252

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +   A K+   ++    +  +++++N+++ G CR G ++E   I+E M +  + P+  T+
Sbjct: 253 KIGEAFKLL-RLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTF 311

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            +L NG        +AL+L  E+              + L P +     L++++     +
Sbjct: 312 NTLINGYCNVGNFHQALVLHAEM------------VKNGLSPNVVTYTTLINSMC----K 355

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           A    +A+E +  M + G+ PN   Y  +
Sbjct: 356 AGNLNRAMEFLDQMRDRGLHPNGRTYTTL 384



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 19/224 (8%)

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG-ALTFFNEMRARGIAPTKISY 360
           I+KA  ++  +A      P V+SYN ++D  I    S   A   F EM   G++P   +Y
Sbjct: 148 INKALSIVN-LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTY 206

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L++ F  +   ++    F EM R+  +  ++V +N +++ YC++  + EA +++  M 
Sbjct: 207 NILIRGFCTAGNLEMGLXFFGEMERNGCLP-NVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  PN+ +Y  + NG+    +  E   + +E+ +R  V                PD  
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV----------------PDRV 309

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
             + L +       F +AL + A M ++G+ PN   Y  +   M
Sbjct: 310 TFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSM 353


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 227/502 (45%), Gaps = 58/502 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  ++    + G+  + L L D M   G +P V+TY V+++   +++     + V
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 202

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G T  + T+  ++      G ++ A       RE    +     + D   Y++
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDA-------REFLNRLSSYGFQPDTVSYTT 255

Query: 176 ENEGDD-----DDDDEVFEKLLPNSINPSSEP-PLLPKTF-------------------- 209
             +G       +D +E+F +++  +  P+     +L + F                    
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315

Query: 210 -APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            A N+ +   ++     +GRV D  + L  M         PD ++YTTV+  L +A   +
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY---GCSPDTISYTTVLKGLCRAERWE 372

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+++L EM R   P N +T+N  +   CQ+  I++A  L+ +M++    E ++V+YN L
Sbjct: 373 DAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG-CEVNIVTYNAL 431

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ++GF +      AL  F  M  +   P  I+YTTL+     + +   A ++  EML+   
Sbjct: 432 VNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKD- 487

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              ++V +N+LV  +C+ GL++EA  ++E+M E+G  PN+ TY +L +GI+      EAL
Sbjct: 488 CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEAL 547

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L   +         GV+          PD     ++  +  R     +A+++   +++ 
Sbjct: 548 ELLHGL------VSNGVS----------PDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591

Query: 509 GIPPNKTKYKKIYVEMHSRMFT 530
           G+ P    Y KI + +  R  T
Sbjct: 592 GMRPKAVIYNKILLALCKRCNT 613



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 21/311 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP++  YT +++G  + GRV + + +L  M  +      P  VTYT ++ A+ K+    +
Sbjct: 142 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR---GCQPSVVTYTVLLEAVCKSTGFGQ 198

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +VL EM   G   N +TYN+++ G C++ ++D A+E L  ++     +PD VSY  ++
Sbjct: 199 AMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG-FQPDTVSYTTVL 257

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G             F EM  +   P ++++  L++ F      + A +V ++M      
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM-SGHGC 316

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             +    N+++   C+ G V++A + +  M   G  P+  +Y ++  G+  A +      
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAER------ 370

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            W++ K   E+ KE V  +        P+E   +    I  +     +A  ++  M EHG
Sbjct: 371 -WEDAK---ELLKEMVRKNC------PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420

Query: 510 IPPNKTKYKKI 520
              N   Y  +
Sbjct: 421 CEVNIVTYNAL 431



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 165/383 (43%), Gaps = 58/383 (15%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T   N V+N     G+     Q  + M  +G  PD ++Y  ++K   RA R      +L
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 378

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++         TF + +      G +E A  +++ M E   +V               
Sbjct: 379 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV--------------- 423

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                              N   Y  L+ G+  +GRV   + + 
Sbjct: 424 -----------------------------------NIVTYNALVNGFCVQGRVDSALELF 448

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            +M         P+ +TYTT+++ L  A  +D A ++LAEM +     N +T+N+L+  +
Sbjct: 449 YSM------PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQ+  +D+A EL+ +M +     P++++YN L+DG     +S  AL   + + + G++P 
Sbjct: 503 CQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPD 561

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y++++   +   + + A K+F  +++D  ++   V +N ++   C+    + A    
Sbjct: 562 IVTYSSIIGVLSREDRVEEAIKMF-HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFF 620

Query: 417 ERMKENGFYPNVATYGSLANGIS 439
             M  NG  PN  TY +L  G++
Sbjct: 621 AYMVSNGCMPNELTYITLIEGLA 643



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 21/275 (7%)

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R       PD    T ++  L + G    A +VL    R G   +   YN L+ GYC+  
Sbjct: 68  RATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYG 127

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q+D A+ L+  M     + PD  +Y  +I G         AL+  ++M  RG  P+ ++Y
Sbjct: 128 QLDAARRLIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTY 183

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T L++A   S+    A +V DEM R      +IV +N+++ G CR G V++A+  + R+ 
Sbjct: 184 TVLLEAVCKSTGFGQAMEVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLS 242

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             GF P+  +Y ++  G+  A++  +   L+ E+ E+                   P+E 
Sbjct: 243 SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEK----------------NCMPNEV 286

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
             D L     R     +A++++  M  HG   N T
Sbjct: 287 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTT 321



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 114/267 (42%), Gaps = 21/267 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   YNA++N     G+    L+LF  M     KP+ +TY  ++     A R      +L
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELL 480

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +L+      + TF  LV+ +   G ++ A  +V+ M E       I     L+  +  
Sbjct: 481 AEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT-- 538

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
           N+ + ++  E+   L+ N +             +P+   Y++++     E RV + ++M 
Sbjct: 539 NDCNSEEALELLHGLVSNGV-------------SPDIVTYSSIIGVLSREDRVEEAIKMF 585

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             +   +D    P  V Y  ++ AL K  + D A    A M   G   N +TY  L++G 
Sbjct: 586 HIV---QDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 642

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVV 323
             +  + + ++LLRE+     +  +++
Sbjct: 643 ANEDFLKETRDLLRELCSRGVLNKNLL 669


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/514 (23%), Positives = 224/514 (43%), Gaps = 91/514 (17%)

Query: 55  KPDTAAYNAVLN----------ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
           +PD   +N +L+          A A  G   +   LFDQM E G  P V+T+N +I    
Sbjct: 173 QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLC 232

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
              R      ++ +++  G+ + + T+ ++V      GD + A  ++  M E        
Sbjct: 233 LEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH------ 286

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE---PPLLPKTFAPNSRIYTTLMK 221
             + D+  YS+           + ++L  +  +  ++     +L K  APN   Y  ++ 
Sbjct: 287 -IKPDVVIYSA-----------IIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID 334

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G+ + GR SD  R+L  M  +E N   PD +T+  ++SA VK G +  A ++  EM    
Sbjct: 335 GFCSFGRWSDAQRLLRDMIEREIN---PDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 391

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID----------- 330
           +  + +TYN ++ G+C+  + D AK +   MA      PDVV++N +ID           
Sbjct: 392 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-----SPDVVTFNTIIDVYCRAKRVDEG 446

Query: 331 ------------------------GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
                                   GF  +D+   A   F EM + G+ P  I+   L+  
Sbjct: 447 MQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYG 506

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
           F  + + + A ++F E+++  ++ +D VA+N+++ G C+   V+EA  +   +  +G  P
Sbjct: 507 FCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEP 565

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           +V TY  + +G        +A +L+ ++K+                   +PD    + L 
Sbjct: 566 DVQTYNVMISGFCGKSAISDANVLFHKMKDNGH----------------EPDNSTYNTLI 609

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             C++A    K++E+++ M  +G   +    K +
Sbjct: 610 RGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMV 643



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 214/469 (45%), Gaps = 43/469 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++T+++ L   G    +E+  L   V K V K    D+V+        
Sbjct: 212 MVEIGLTPVVITFNTLINGLCLEGR--VLEAAAL---VNKMVGKGLHIDVVT-------- 258

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G  K  L L  +M E   KPDV+ Y+ +I    +        ++   +L
Sbjct: 259 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 318

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E GI   + T+  ++  +  FG    A+ +++ M E  R++   +   +    +S  EG 
Sbjct: 319 EKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE--REINPDVLTFNALISASVKEGK 376

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++ +++L   I         P T   NS IY     G+    R  D   M   M 
Sbjct: 377 LFEAEKLCDEMLHRCI--------FPDTVTYNSMIY-----GFCKHNRFDDAKHMFDLM- 422

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                 + PD VT+ T++    +A  +D   Q+L E++R G+ AN  TYN L+ G+C+  
Sbjct: 423 ------ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVD 476

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++ A++L +EM     + PD ++ NIL+ GF   +    AL  F  ++   I    ++Y
Sbjct: 477 NLNAAQDLFQEMISHG-VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAY 535

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++      S+   A  +F   L    V+ D+  +N+++ G+C    + +A  +  +MK
Sbjct: 536 NIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMK 594

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +NG  P+ +TY +L  G     K GE   + K I+   E++  G + D+
Sbjct: 595 DNGHEPDNSTYNTLIRG---CLKAGE---IDKSIELISEMRSNGFSGDA 637



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 28/292 (9%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           ++  ++        +  +     ++T++G   + +T+N LL G C + +I +A  L   M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 313 AD-----DAKIE----PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            +     D  +E    P V+++N LI+G  L      A    N+M  +G+    ++Y T+
Sbjct: 203 VETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 262

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +         K A  +  +M  +  +K D+V ++ +++  C+ G   +A+ +   M E G
Sbjct: 263 VNGMCKMGDTKSALNLLSKM-EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 321

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PNV TY  + +G     +  +A  L +++ ER                 + PD    +
Sbjct: 322 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIER----------------EINPDVLTFN 365

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM--HSRMFTSKH 533
           AL    V+     +A ++   M    I P+   Y  +      H+R   +KH
Sbjct: 366 ALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 417



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 101/211 (47%), Gaps = 12/211 (5%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           V+   V+    D A  +  +M    +P N  ++NIL+K +C   ++  +     ++    
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT-KL 170

Query: 317 KIEPDVVSYNILIDGFILIDDSAGAL----------TFFNEMRARGIAPTKISYTTLMKA 366
             +PDVV++N L+ G  L D  + AL          + F++M   G+ P  I++ TL+  
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLING 230

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
             L  +   A  + ++M+    + +D+V +  +V G C+MG  + A  ++ +M+E    P
Sbjct: 231 LCLEGRVLEAAALVNKMV-GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKP 289

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKER 457
           +V  Y ++ + +       +A  L+ E+ E+
Sbjct: 290 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 320



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 26/225 (11%)

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D A  L R+M +  +I  ++ S+NILI  F      + +L+ F ++   G  P  +++ T
Sbjct: 123 DVAISLYRKM-EIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNT 181

Query: 363 LMKAFALSSQPKLANKVFDEM-----LRDPRVKVD----IVAWNMLVEGYCRMGLVEEAK 413
           L+    L  +   A  +F  M     L D  V++     ++ +N L+ G C  G V EA 
Sbjct: 182 LLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAA 241

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            ++ +M   G + +V TYG++ NG+        AL L  +++E                 
Sbjct: 242 ALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEE----------------T 285

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
            +KPD  +  A+ D   +      A  + + M E GI PN   Y 
Sbjct: 286 HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYN 330



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A+ FF+ M       T +    ++  F   ++P +A  ++ +M    R+ ++I ++N+L+
Sbjct: 90  AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKM-EIRRIPLNIYSFNILI 148

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + +C    +  +     ++ + GF P+V T+ +L +G+ L  +  EAL L+  + E
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVE 204


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 214/469 (45%), Gaps = 43/469 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++T+++ L   G    +E+  L   V K V K    D+V+        
Sbjct: 217 MVEIGLTPVVITFNTLINGLCLEGR--VLEAAAL---VNKMVGKGLHIDVVT-------- 263

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G  K  L L  +M E   KPDV+ Y+ +I    +        ++   +L
Sbjct: 264 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 323

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E GI   + T+  ++  +  FG    A+ +++ M E  R++   +   +    +S  EG 
Sbjct: 324 EKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE--REINPDVLTFNALISASVKEGK 381

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++ +++L   I         P T   NS IY     G+    R  D   M   M 
Sbjct: 382 LFEAEKLCDEMLHRCI--------FPDTVTYNSMIY-----GFCKHNRFDDAKHMFDLM- 427

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                 + PD VT+ T++    +A  +D   Q+L E++R G+ AN  TYN L+ G+C+  
Sbjct: 428 ------ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVD 481

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++ A++L +EM     + PD ++ NIL+ GF   +    AL  F  ++   I    ++Y
Sbjct: 482 NLNAAQDLFQEMISHG-VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAY 540

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++      S+   A  +F   L    V+ D+  +N+++ G+C    + +A  +  +MK
Sbjct: 541 NIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMK 599

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +NG  P+ +TY +L  G     K GE   + K I+   E++  G + D+
Sbjct: 600 DNGHEPDNSTYNTLIRG---CLKAGE---IDKSIELISEMRSNGFSGDA 642



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/516 (23%), Positives = 222/516 (43%), Gaps = 90/516 (17%)

Query: 55  KPDTAAYNAVLN----------ACANLGK--PKKFLQ---LFDQMHEFGAKPDVLTYNVM 99
           +PD   +N +L+          A A  G      FL+   LFDQM E G  P V+T+N +
Sbjct: 173 QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTL 232

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
           I       R      ++ +++  G+ + + T+ ++V      GD + A  ++  M E   
Sbjct: 233 INGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 292

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
               +I    ++      +G   D   +F ++L   I             APN   Y  +
Sbjct: 293 KPDVVIYSAIIDRLCK--DGHHSDAQYLFSEMLEKGI-------------APNVFTYNCM 337

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G+ + GR SD  R+L  M  +E N   PD +T+  ++SA VK G +  A ++  EM  
Sbjct: 338 IDGFCSFGRWSDAQRLLRDMIEREIN---PDVLTFNALISASVKEGKLFEAEKLCDEMLH 394

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID--------- 330
             +  + +TYN ++ G+C+  + D AK +   MA      PDVV++N +ID         
Sbjct: 395 RCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-----SPDVVTFNTIIDVYCRAKRVD 449

Query: 331 --------------------------GFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
                                     GF  +D+   A   F EM + G+ P  I+   L+
Sbjct: 450 EGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 509

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             F  + + + A ++F E+++  ++ +D VA+N+++ G C+   V+EA  +   +  +G 
Sbjct: 510 YGFCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 568

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            P+V TY  + +G        +A +L+ ++K+                   +PD    + 
Sbjct: 569 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGH----------------EPDNSTYNT 612

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L   C++A    K++E+++ M  +G   +    K +
Sbjct: 613 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMV 648



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 122/297 (41%), Gaps = 33/297 (11%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           ++  ++        +  +     ++T++G   + +T+N LL G C + +I +A  L   M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 313 ADDAKIE--------------PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
            +   +E              P V+++N LI+G  L      A    N+M  +G+    +
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVV 262

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y T++         K A  +  +M  +  +K D+V ++ +++  C+ G   +A+ +   
Sbjct: 263 TYGTIVNGMCKMGDTKSALNLLSKM-EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSE 321

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M E G  PNV TY  + +G     +  +A  L +++ ER                 + PD
Sbjct: 322 MLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIER----------------EINPD 365

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM--HSRMFTSKH 533
               +AL    V+     +A ++   M    I P+   Y  +      H+R   +KH
Sbjct: 366 VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 422



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 38/262 (14%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           V+   V+    D A  +  +M    +P N  ++NIL+K +C   ++  +     ++    
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT-KL 170

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
             +PDVV++N L+ G  L D  + AL  F  M   G           ++A AL       
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG----------FLEAVAL------- 213

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
              FD+M+      V ++ +N L+ G C  G V EA  ++ +M   G + +V TYG++ N
Sbjct: 214 ---FDQMVEIGLTPV-VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+        AL L  +++E                  +KPD  +  A+ D   +     
Sbjct: 270 GMCKMGDTKSALNLLSKMEE----------------THIKPDVVIYSAIIDRLCKDGHHS 313

Query: 497 KALEIVACMEEHGIPPNKTKYK 518
            A  + + M E GI PN   Y 
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYN 335



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A+ FF+ M       T +    ++  F   ++P +A  ++ +M    R+ ++I ++N+L+
Sbjct: 90  AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKM-EIRRIPLNIYSFNILI 148

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + +C    +  +     ++ + GF P+V T+ +L +G+ L  +  EAL L+  + E
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVE 204


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 194/436 (44%), Gaps = 50/436 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   YN +++         K   +F QM + G KPD LTY ++I    +A        
Sbjct: 327 KPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEG 386

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE--- 171
           V +++++ G+     T+  L+  Y+  G  E    +VQ ++E        +   DLE   
Sbjct: 387 VFQQMIDKGVKPNNGTYNCLIHGYLSTGQWE---EVVQRIKE--------MSAHDLEPDV 435

Query: 172 -------DYSSENEGDDDDDDEVFEKLLPNSINPS-----------------SEPP---- 203
                  DY  +N G  ++   +F+ ++   I PS                 SE      
Sbjct: 436 FTYGLLLDYLCKN-GKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLN 494

Query: 204 -LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
            ++    +PN RI+ T++  Y     + + + +   M++Q      P+ VTY T++ AL 
Sbjct: 495 LMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQ---GLSPNVVTYGTLIDALC 551

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           K G +D A     +M   GV  N + +N L+ G C   + +K +EL  EM +   I PD+
Sbjct: 552 KLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG-IRPDI 610

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           V +N ++           A    + M   G+ P  ISY TL+     +S+   A K+ D 
Sbjct: 611 VFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDG 670

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M+    +K +IV++N L+ GYC+ G ++ A  +   M   G  P V TY ++ NG+  + 
Sbjct: 671 MV-SAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSG 729

Query: 443 KPGEALLLW-KEIKER 457
           +  EA  L+   IK R
Sbjct: 730 RFSEARELYVNMIKSR 745



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 185/407 (45%), Gaps = 31/407 (7%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   PD  +YN V+N   N G+  K   LF +M   G  PDV+TYN +I    +A     
Sbjct: 187 SSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDR 243

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              V ++++E G+     T+ +++       ++++AE + Q M +       +     ++
Sbjct: 244 AEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIID 303

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                   D  +   VF++++   +              P+   Y T++ G      +  
Sbjct: 304 GLCKAQAVDRAEG--VFQQMIDRGVK-------------PDHVTYNTIIDGLCKAQAID- 347

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             +  G  ++  D    PD++TYT ++  L KA S+DRA  V  +M   GV  N  TYN 
Sbjct: 348 --KAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNC 405

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GY    Q ++  + ++EM+    +EPDV +Y +L+D          A + F+ M  +
Sbjct: 406 LIHGYLSTGQWEEVVQRIKEMSAH-DLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRK 464

Query: 352 GIAPTKISYTTLMKAF----ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           GI P+   Y  ++  +    ALS    L N +    +  P  ++    +N ++  Y +  
Sbjct: 465 GIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGI-SPNHRI----FNTVICAYAKRA 519

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++E   I  +MK+ G  PNV TYG+L + +    +  +A+L + ++
Sbjct: 520 MIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQM 566



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/471 (23%), Positives = 198/471 (42%), Gaps = 74/471 (15%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARAS 107
           D  +   PD   Y+ V+     +G+ +     F  + + G + D +  N ++K LC    
Sbjct: 75  DCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKR 134

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
               +  +L ++ E+G  L + ++ +L+         E A  ++  M +G+   C     
Sbjct: 135 VGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSC----- 189

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                                                     +P+   Y  ++ G+ NEG
Sbjct: 190 ------------------------------------------SPDVVSYNIVINGFFNEG 207

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           +V     +   M         PD VTY T++  L KA  +DRA  V  +M   GV  N +
Sbjct: 208 QVDKAYSLFLEM------GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNV 261

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYN ++ G C+  ++D A+ + ++M D   ++P  V+YN +IDG         A   F +
Sbjct: 262 TYNTIIDGLCKAQEVDMAEGVFQKMVDKG-VKPSNVTYNTIIDGLCKAQAVDRAEGVFQQ 320

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  RG+ P  ++Y T++     +     A  VF +M+ D  VK D + + ++++G C+  
Sbjct: 321 MIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI-DKGVKPDNLTYTIIIDGLCKAQ 379

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPGEALLLWKEIKERCEVKKEGVN 466
            V+ A+ + ++M + G  PN  TY  L +G +S  +        W+E+ +R  +K+   +
Sbjct: 380 SVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQ--------WEEVVQR--IKEMSAH 429

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              DL P +     LLD L     +     +A  +   M   GI P+ T Y
Sbjct: 430 ---DLEPDVFTYGLLLDYLC----KNGKCNEARSLFDSMIRKGIKPSVTIY 473



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 121/545 (22%), Positives = 222/545 (40%), Gaps = 92/545 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN +++      +  +   +F QM E G KP+ +TYN +I    +A    +   V
Sbjct: 223 PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            +++++ G+     T+ +++        ++ AE + Q M +  R V     + D   Y++
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID--RGV-----KPDHVTYNT 335

Query: 176 ENEG-----DDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKT 208
             +G       D  + VF++++   + P +                         ++ K 
Sbjct: 336 IIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKG 395

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN+  Y  L+ GY++ G+  + V+ +  M   +     PD  TY  ++  L K G  +
Sbjct: 396 VKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHD---LEPDVFTYGLLLDYLCKNGKCN 452

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL------------------- 309
            AR +   M R G+  +   Y I+L GY ++  + +  +LL                   
Sbjct: 453 EARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVI 512

Query: 310 -----REMADDA----------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
                R M D+            + P+VV+Y  LID    +     A+  FN+M   G+ 
Sbjct: 513 CAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVT 572

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  + + +L+       + +   ++F EML +  ++ DIV +N ++   C+ G V EA+R
Sbjct: 573 PNNVVFNSLVYGLCTVDKWEKVEELFLEML-NQGIRPDIVFFNTVLCNLCKEGRVMEARR 631

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +I+ M   G  P+V +Y +L +G   A +  EA+ L                 D  +   
Sbjct: 632 LIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL----------------DGMVSAG 675

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           LKP+    + L     +A     A  +   M   G+ P    Y  I     + +F S   
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTIL----NGLFRSGRF 731

Query: 535 SQARQ 539
           S+AR+
Sbjct: 732 SEARE 736



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 204/463 (44%), Gaps = 48/463 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+   ++ ++    ++G          ++ VV+R+++ S  D+    +PD   
Sbjct: 391 MIDKGVKPNNGTYNCLIHGYLSTGQ---------WEEVVQRIKEMSAHDL----EPDVFT 437

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+     GK  +   LFD M   G KP V  Y +M+    +      +  +L  ++
Sbjct: 438 YGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMV 497

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRR-----------DVCKIIREL 168
             GI+     F +++ AY     + E+    ++  ++G              +CK+ R  
Sbjct: 498 ANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVD 557

Query: 169 D--LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP-------LLPKTFAPNSRIYTTL 219
           D  L+     NEG   ++  VF  L+                  +L +   P+   + T+
Sbjct: 558 DAVLQFNQMINEGVTPNN-VVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTV 616

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +     EGRV +  R++ +M         PD ++Y T++     A  MD A ++L  M  
Sbjct: 617 LCNLCKEGRVMEARRLIDSMVCM---GLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVS 673

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G+  N ++YN LL GYC+  +ID A  L REM     + P V +YN +++G       +
Sbjct: 674 AGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG-VTPGVETYNTILNGLF----RS 728

Query: 340 GALTFFNEMRARGIAPTKI----SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           G  +   E+    I   K+    +Y+ ++  F  ++    A K+F + L    +++DI+ 
Sbjct: 729 GRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIF-QSLCSMDLQLDIIT 787

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +N++++G  + G  E+A  +   +  NG  P+V TY  +A  +
Sbjct: 788 FNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENL 830



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 23/285 (8%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R   N   PD  TY+ V+    + G ++        + + G   + I  N LLKG C 
Sbjct: 72  MLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCD 131

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAP 355
             ++ +A  +L     +      VVSYN L+ G       +++   L    + +    +P
Sbjct: 132 TKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSP 191

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SY  ++  F    Q   A  +F EM   P    D+V +N +++G C+   V+ A+ +
Sbjct: 192 DVVSYNIVINGFFNEGQVDKAYSLFLEMGVSP----DVVTYNTIIDGLCKAQEVDRAEDV 247

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            ++M E G  PN  TY ++ +G+  A++   A  +++++ ++                 +
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDK----------------GV 291

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           KP     + + D   +A    +A  +   M + G+ P+   Y  I
Sbjct: 292 KPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTI 336



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 133/332 (40%), Gaps = 32/332 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P +  ++TV+  L   G              V   R+  D  +    KPD  +
Sbjct: 601 MLNQGIRPDIVFFNTVLCNLCKEGR-------------VMEARRLIDSMVCMGLKPDVIS 647

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++      +  + ++L D M   G KP++++YN ++    +A R      +   +L
Sbjct: 648 YNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREML 707

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+T  + T+ +++      G    A  +   M + R+        + L+ +   N   
Sbjct: 708 RKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCF- 766

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D+  ++F+ L       S +  L   TF         ++ G    GR  D + +  A+ 
Sbjct: 767 -DEAFKIFQSLC------SMDLQLDIITF-------NIMIDGLFKGGRKEDAMDLFAAI- 811

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               N   P  VTY  +   L++ GS++    + + M + G   N    N L++    + 
Sbjct: 812 --PANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRG 869

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +I +A   L ++ D+     +  + ++LI  F
Sbjct: 870 EIPRAGAYLSKL-DEKNFSLEASTTSMLISLF 900


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 214/469 (45%), Gaps = 43/469 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++T+++ L   G    +E+  L   V K V K    D+V+        
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGR--VLEAAAL---VNKMVGKGLHIDVVT-------- 47

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G  K  L L  +M E   KPDV+ Y+ +I    +        ++   +L
Sbjct: 48  YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 107

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E GI   + T+  ++  +  FG    A+ +++ M E  R++   +   +    +S  EG 
Sbjct: 108 EKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE--REINPDVLTFNALISASVKEGK 165

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++ +++L   I         P T   NS IY     G+    R  D   M   M 
Sbjct: 166 LFEAEKLCDEMLHRCI--------FPDTVTYNSMIY-----GFCKHNRFDDAKHMFDLM- 211

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                 + PD VT+ T++    +A  +D   Q+L E++R G+ AN  TYN L+ G+C+  
Sbjct: 212 ------ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVD 265

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++ A++L +EM     + PD ++ NIL+ GF   +    AL  F  ++   I    ++Y
Sbjct: 266 NLNAAQDLFQEMISHG-VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAY 324

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++      S+   A  +F   L    V+ D+  +N+++ G+C    + +A  +  +MK
Sbjct: 325 NIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMK 383

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +NG  P+ +TY +L  G     K GE   + K I+   E++  G + D+
Sbjct: 384 DNGHEPDNSTYNTLIRG---CLKAGE---IDKSIELISEMRSNGFSGDA 426



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 208/475 (43%), Gaps = 81/475 (17%)

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M E G  P V+T+N +I       R      ++ +++  G+ + + T+ ++V      GD
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE-- 201
            + A  ++  M E          + D+  YS+           + ++L  +  +  ++  
Sbjct: 61  TKSALNLLSKMEETHI-------KPDVVIYSA-----------IIDRLCKDGHHSDAQYL 102

Query: 202 -PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
              +L K  APN   Y  ++ G+ + GR SD  R+L  M  +E N   PD +T+  ++SA
Sbjct: 103 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREIN---PDVLTFNALISA 159

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
            VK G +  A ++  EM    +  + +TYN ++ G+C+  + D AK +   MA      P
Sbjct: 160 SVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-----SP 214

Query: 321 DVVSYNILID-----------------------------------GFILIDDSAGALTFF 345
           DVV++N +ID                                   GF  +D+   A   F
Sbjct: 215 DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLF 274

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            EM + G+ P  I+   L+  F  + + + A ++F E+++  ++ +D VA+N+++ G C+
Sbjct: 275 QEMISHGVCPDTITCNILLYGFCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCK 333

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
              V+EA  +   +  +G  P+V TY  + +G        +A +L+ ++K+         
Sbjct: 334 GSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGH------ 387

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                     +PD    + L   C++A    K++E+++ M  +G   +    K +
Sbjct: 388 ----------EPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMV 432



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 31/255 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  YN+++       +      +FD M    A PDV+T+N +I +  RA R    + +
Sbjct: 183 PDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQL 238

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS- 174
           L  I   G+    TT+ +L+  +    +L  A+ + Q M      VC      ++  Y  
Sbjct: 239 LREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMIS--HGVCPDTITCNILLYGF 296

Query: 175 SENEGDDD-------------DDDEVFEKLLPNSINPSSEPPLLPKTFA--------PNS 213
            ENE  ++             D D V   ++ + +   S+       F         P+ 
Sbjct: 297 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 356

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
           + Y  ++ G+  +  +SD   +   M+   DN   PD+ TY T++   +KAG +D++ ++
Sbjct: 357 QTYNVMISGFCGKSAISDANVLFHKMK---DNGHEPDNSTYNTLIRGCLKAGEIDKSIEL 413

Query: 274 LAEMTRIGVPANRIT 288
           ++EM   G   +  T
Sbjct: 414 ISEMRSNGFSGDAFT 428


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 188/401 (46%), Gaps = 28/401 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P     N++LN   +  +  + + L DQM E G +PD +T+  ++    + ++    V +
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +ER++  G    + T+ +++      G+ ++A  ++  M +G+ +   +I    ++    
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262

Query: 176 ENEGDDDDDDEVFEKLLPNSINPS--SEPPL--------------------LPKTFAPNS 213
               DD  D  +F K+    I P   +  PL                    L K   P+ 
Sbjct: 263 YKHMDDAFD--LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDL 320

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             +  L+  ++ EG++ +  ++   M + +     PD V Y T++    K   ++   +V
Sbjct: 321 VFFNALIDAFVKEGKLVEAEKLYDEMVKSKH--CFPDVVAYNTLIKGFCKYKRVEEGMEV 378

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM++ G+  N +TY  L+ G+ Q    D A+ + ++M  D  + PD+++YNIL+DG  
Sbjct: 379 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG-VHPDIMTYNILLDGLC 437

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
              +   AL  F  M+ R +    ++YTT+++A   + + +    +F   L    VK ++
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCS-LSLKGVKPNV 496

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           V +  ++ G+CR GL EEA  +   MKE+G  PN  TY +L
Sbjct: 497 VTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTL 537



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 172/399 (43%), Gaps = 54/399 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L+A A + K    + L +QM   G   ++ TY++ I    R S+  L + +
Sbjct: 73  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  +     +  A  +V  M E                   
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE------------------- 173

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P++  +TTL+ G     + S+ V +
Sbjct: 174 -------------------------------MGYQPDTVTFTTLVHGLFQHNKASEAVAL 202

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +    R       PD VTY  V++ L K G  D A  +L +M +  + A+ + YN ++ G
Sbjct: 203 V---ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDG 259

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   +D A +L  +M +   I+PDV +YN LI         + A    ++M  + I P
Sbjct: 260 LCKYKHMDDAFDLFNKM-ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINP 318

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             + +  L+ AF    +   A K++DEM++      D+VA+N L++G+C+   VEE   +
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEV 378

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
              M + G   N  TY +L +G   AR    A +++K++
Sbjct: 379 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 417



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 173/453 (38%), Gaps = 70/453 (15%)

Query: 2   LRSGYLPHVKAWSTV--VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSD------ 53
           L  G   H KA   V  V R+   G    + +   +  V+  + K  +PD+  +      
Sbjct: 186 LVHGLFQHNKASEAVALVERMVVKGCQPDLVT---YGAVINGLCKRGEPDLALNLLNKME 242

Query: 54  ---SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
               + D   YN +++             LF++M   G KPDV TYN +I       R  
Sbjct: 243 KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWS 302

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
               +L  +LE  I   +  F +L+ A+V  G L  AE +   M +              
Sbjct: 303 DASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVK-------------- 348

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                               K   P+   Y TL+KG+    RV 
Sbjct: 349 -----------------------------------SKHCFPDVVAYNTLIKGFCKYKRVE 373

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + + +    R         + VTYTT++    +A   D A+ V  +M   GV  + +TYN
Sbjct: 374 EGMEVF---REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN 430

Query: 291 ILLKGYCQQLQIDKAKELLREMAD-DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           ILL G C    ++ A  +   M   D K+  D+V+Y  +I+              F  + 
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKL--DIVTYTTMIEALCKAGKVEDGWDLFCSLS 488

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            +G+ P  ++YTT+M  F      + A+ +F EM  D  +  +   +N L+    R G  
Sbjct: 489 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLP-NSGTYNTLIRARLRDGDE 547

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
             +  +I+ M+  GF  + +T+G + N +   R
Sbjct: 548 AASAELIKEMRSCGFAGDASTFGLVTNMLHDGR 580



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 112/227 (49%), Gaps = 4/227 (1%)

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D V  LG  + Q    SH +  TY+  ++   +   +  A  +L +M ++G   + +T N
Sbjct: 92  DLVISLGE-QMQNLGISH-NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLN 149

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            LL G+C   +I +A  L+ +M +    +PD V++  L+ G    + ++ A+     M  
Sbjct: 150 SLLNGFCHGNRISEAVALVDQMVE-MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVV 208

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P  ++Y  ++       +P LA  + ++M    +++ D+V +N +++G C+   ++
Sbjct: 209 KGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM-EKGKIEADVVIYNTIIDGLCKYKHMD 267

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +A  +  +M+  G  P+V TY  L + +    +  +A  L  ++ E+
Sbjct: 268 DAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEK 314



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 116/290 (40%), Gaps = 56/290 (19%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           ++ D + + G M +       P  V ++ ++SA+ K    D    +  +M  +G+  N  
Sbjct: 55  KLDDAIGLFGDMVKSR---PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 111

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY+I +  +C++ Q+  A  +L +M       P +V+ N L++GF   +  + A+   ++
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMK-LGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 170

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M   G  P  +++TTL                                    V G  +  
Sbjct: 171 MVEMGYQPDTVTFTTL------------------------------------VHGLFQHN 194

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
              EA  ++ERM   G  P++ TYG++ NG+    +P  AL L  ++++           
Sbjct: 195 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK----------- 243

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                  ++ D  + + + D   +      A ++   ME  GI P+   Y
Sbjct: 244 -----GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/523 (25%), Positives = 227/523 (43%), Gaps = 63/523 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+   +ST+++ L   G  G     +  D++ +   K  +P + + + P    
Sbjct: 258 MVKDGCNPNSVTYSTLINGLCNEGRIG-----EAMDMLEEMTEKGIEPTVYTYTVP---- 308

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
               +++  ++G+    + L   M + G  P V TY  +I    RA +  L + +  ++L
Sbjct: 309 ----ISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKML 364

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ +L+      G   IA  I   M EG   +       + + Y+   +G 
Sbjct: 365 KEGLVPNTVTYNALINELCTEGRFGIALKIFDWM-EGHGTLA------NAQTYNQIIKGL 417

Query: 181 DDDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              DD      VF K+L +   PS      P     N+ I   L +GY+N     +  R 
Sbjct: 418 FGMDDIEKAMVVFNKMLKDG--PS------PTVVTYNTLIVENLKRGYLN-----NATRF 464

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M+  E N   PD  TY  ++S   K G +D A     EM + G+  N+ TY  ++ G
Sbjct: 465 LYMMK--ESNC-EPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDG 521

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++ +ID A  L   M ++      + +YN +I G    +  + A  F  +M  +G+ P
Sbjct: 522 YCKEGKIDVALSLFERMEENG-CSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQP 580

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+YT+L+     ++   LA K+F EM +   +  +   +  L+ G C+ G V+ A   
Sbjct: 581 NTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLP-NAHTYTSLIYGLCQEGKVDAA--- 636

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            ER+ ENG  P + TY +L +G+    +  EA  L + +KE+                 L
Sbjct: 637 -ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEK----------------GL 679

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
            P  E+  +L     ++     ALEI   M   G  P+   YK
Sbjct: 680 SPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYK 722



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/529 (22%), Positives = 217/529 (41%), Gaps = 48/529 (9%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVV-------VKRVRKFSDPDIVSDSK 55
           R  Y   +  + ++++RL       P + V++  +        +KRV  F      SDS 
Sbjct: 97  RHFYKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSG 156

Query: 56  P---DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
                  ++N +L              ++ Q+   G KP +LT+N MI +  +  +    
Sbjct: 157 LFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEA 216

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           V V  +I +  +     T+ SL+  +     L+ A  +   M +   +   +     +  
Sbjct: 217 VLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLING 276

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               NEG   +  ++ E++    I P+                YT  +    + GRV D 
Sbjct: 277 LC--NEGRIGEAMDMLEEMTEKGIEPT-------------VYTYTVPISSLCDIGRVDDA 321

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + ++ +M ++      P   TYT ++S L +AG M+ A  +  +M + G+  N +TYN L
Sbjct: 322 INLVRSMGKK---GCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNAL 378

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +   C + +   A ++   M     +  +  +YN +I G   +DD   A+  FN+M   G
Sbjct: 379 INELCTEGRFGIALKIFDWMEGHGTL-ANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDG 437

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            +PT ++Y TL+           A + F  M+++   + D   +  L+ G+C+ G ++ A
Sbjct: 438 PSPTVVTYNTLIVENLKRGYLNNATR-FLYMMKESNCEPDERTYCELISGFCKGGKLDSA 496

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CEVKKEGVNADSDL 471
                 M + G  PN  TY ++ +G     K   AL L++ ++E  C    E  NA    
Sbjct: 497 TSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNA---- 552

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    ++  L+    +   F +A +  A M E G+ PN   Y  +
Sbjct: 553 ---------IISGLS----KGNRFSEAEKFCAKMTEQGLQPNTITYTSL 588



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/509 (21%), Positives = 191/509 (37%), Gaps = 107/509 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P V+ ++ ++S L  +G           ++ +    K     +V    P+T  
Sbjct: 328 MGKKGCSPSVQTYTAIISGLFRAGK---------MELAIGMYHKMLKEGLV----PNTVT 374

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N     G+    L++FD M   G   +  TYN +IK           + V  ++L
Sbjct: 375 YNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKML 434

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDLEDYSS 175
           + G +  + T+ +L+   +  G L  A   +  M+E       R  C++I          
Sbjct: 435 KDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFC------ 488

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D     F ++L   I             +PN   YT ++ GY  EG++   + +
Sbjct: 489 -KGGKLDSATSFFYEMLKCGI-------------SPNQWTYTAMIDGYCKEGKIDVALSL 534

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                R E+N       TY  ++S L K      A +  A+MT  G+  N ITY  L+ G
Sbjct: 535 F---ERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLING 591

Query: 296 YCQQLQIDKAKELLREM-------------------ADDAKI-----------EPDVVSY 325
            C+    + A ++  EM                     + K+           EP + +Y
Sbjct: 592 LCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTY 651

Query: 326 NILIDGFI----------LIDDSA-------------------------GALTFFNEMRA 350
           + L+ G            L+++                            AL  FN M  
Sbjct: 652 STLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAV 711

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P    Y  L+ A    S+ + A  +F  +L+  +   D++ W +LV+G  + G  +
Sbjct: 712 KGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKK-QWNSDLIVWTVLVDGLLQEGDSD 770

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGIS 439
              + +  M+     P++ TY  LA  +S
Sbjct: 771 LCMKFLYLMESRNCTPSLHTYIILARELS 799



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 116/267 (43%), Gaps = 23/267 (8%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMA--DDAKIEPDVVSYNILIDGFILID 336
           +I  PA+ +   +++K    + ++ +  + L  ++  D       + S+N L+      D
Sbjct: 118 KILAPADHVRI-LMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFD 176

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A   + ++ + G+ P+ +++ T++       + + A  VF+++ +      D   +
Sbjct: 177 MVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCP-DAFTY 235

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             L+ G+CR   +++A  + +RM ++G  PN  TY +L NG+    + GEA+ + +E+ E
Sbjct: 236 TSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTE 295

Query: 457 R----------------CEVKK--EGVNADSDL-PPPLKPDEELLDALADICVRAAFFRK 497
           +                C++ +  + +N    +      P  +   A+     RA     
Sbjct: 296 KGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMEL 355

Query: 498 ALEIVACMEEHGIPPNKTKYKKIYVEM 524
           A+ +   M + G+ PN   Y  +  E+
Sbjct: 356 AIGMYHKMLKEGLVPNTVTYNALINEL 382


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 209/460 (45%), Gaps = 39/460 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ G  P +  ++T+++ L   G+    ++V+LFD +V +             +PD   
Sbjct: 154 VIKLGLQPTIVTFTTLINGLCKVGEFA--QAVELFDDMVAK-----------GCQPDVYT 200

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N    +G+      L  +M E G +P+++TY+ +I    R    +  + +   + 
Sbjct: 201 YNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMK 260

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ SL+     F   + A  ++  M     ++   I   ++   +   EG 
Sbjct: 261 AKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTS--LNIMPDIVTFNVLVDTFCKEGK 318

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   V + +    + P             N   Y++LM GY     V +  ++   M 
Sbjct: 319 VSEALGVLKTMTEMGVEP-------------NVVTYSSLMYGYSLWTDVVEARKLFHVMI 365

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+  +Y  +++   KA  +D A Q+  EM   G+  N ++YN L+ G+CQ  
Sbjct: 366 TK---GCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLG 422

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +A++L R M  +  + PD+ +Y+IL+DGF        A   F  M++  + P  + Y
Sbjct: 423 KLREAQDLFRNMCTNGNL-PDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMY 481

Query: 361 TTLMKAFALSSQPKLANKVFDEML---RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           T L+ A   S   K A K+F E+      P V++    +  ++ G C+ GL++EA     
Sbjct: 482 TILVHAMCKSGNHKDARKLFSELFVQGLQPHVQL----YTTIINGLCKEGLLDEALEAFR 537

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            M+ +G  P+  +Y  +  G+   +    ALLL  E+++R
Sbjct: 538 NMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDR 577



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 203/487 (41%), Gaps = 81/487 (16%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           F V+ K ++    P IV+        +  ++N    +G+  + ++LFD M   G +PDV 
Sbjct: 148 FSVLAKVIKLGLQPTIVT--------FTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVY 199

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           TYN +I    +         +L+++ E G    M T+ +L+ +                 
Sbjct: 200 TYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLC--------------- 244

Query: 155 REGRRDVCKIIRE-LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
               RD  +++ E LD+  Y                              +  K  +P+ 
Sbjct: 245 ----RD--RLVNEALDIFSY------------------------------MKAKGISPDI 268

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YT+L++G     R  +   +L  M         PD VT+  +V    K G +  A  V
Sbjct: 269 FTYTSLIQGLCKFSRWKEASALLNEMTSLN---IMPDIVTFNVLVDTFCKEGKVSEALGV 325

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L  MT +GV  N +TY+ L+ GY     + +A++L   M      +P++ SYNILI+G+ 
Sbjct: 326 LKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG-CKPNIFSYNILINGYC 384

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A+  FNEM  +G+ P  +SY TL+  F    + + A  +F  M  +  +  D+
Sbjct: 385 KAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLP-DL 443

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             +++L++G+C+ G + +A R+   M+     PN+  Y  L + +  +    +A  L+ E
Sbjct: 444 FTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSE 503

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +                    L+P  +L   + +   +     +ALE    ME  G PP+
Sbjct: 504 L----------------FVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPD 547

Query: 514 KTKYKKI 520
           +  Y  I
Sbjct: 548 EISYNVI 554



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 122/273 (44%), Gaps = 19/273 (6%)

Query: 249 PDHVTYTTVVSALVKAGSM-DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           P  + +  ++SA+VK G   D    +  +M  +G+  N  T +I +  +CQ  ++D    
Sbjct: 90  PCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFS 149

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +L ++     ++P +V++  LI+G   + + A A+  F++M A+G  P   +Y T++   
Sbjct: 150 VLAKVIK-LGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGL 208

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               +   A  +  +M  +   + ++V ++ L++  CR  LV EA  I   MK  G  P+
Sbjct: 209 CKIGETAAAAGLLKKM-EEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPD 267

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + TY SL  G+    +  EA  L  E+                    + PD    + L D
Sbjct: 268 IFTYTSLIQGLCKFSRWKEASALLNEMTSL----------------NIMPDIVTFNVLVD 311

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +     +AL ++  M E G+ PN   Y  +
Sbjct: 312 TFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSL 344


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 214/455 (47%), Gaps = 31/455 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+V +++ ++  L    ++   E+++L  ++         PD   D  PD  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLC--DENRSQEALELLQMM---------PDDGGDCPPDVVS 201

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  V+N     G   K    + +M + G  P+V+TYN +I    +A      + VL  ++
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMV 261

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S+V  Y   G  + A   ++ M     +   ++    L DY  +N G 
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP-DVVTYNSLMDYLCKN-GR 319

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F+ +    + P                 Y TL++GY  +G + +   +L  M 
Sbjct: 320 CTEARKMFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMHGLLDLMV 366

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N  HP+H  ++ ++ A  K G +D+A  V ++M + G+  + +TY  ++   C+  
Sbjct: 367 R---NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ A     +M D+ ++ P  + YN LI    + D    A     EM  RGI    I +
Sbjct: 424 RVEDAMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFF 482

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++ +     +   + K+FD M+R   VK +I+ ++ L++GYC  G ++EA +++  M 
Sbjct: 483 NSIIDSHCKEGRVIESEKLFDLMVR-IGVKPNIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             G  P+  TY +L NG     +  +AL+L++E++
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREME 576



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/466 (21%), Positives = 213/466 (45%), Gaps = 54/466 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++G +P+ + ++++V    +SG   P E++         ++K     +    +PD   
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQ--PKEAIGF-------LKKMHSDGV----EPDVVT 306

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G+  +  ++FD M + G KP++ TY  +++  A       +  +L+ ++
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             GI      F  L+ AY   G ++ A  +   MR+   +        D   Y +     
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP-------DTVTYGTVIGIL 419

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNS 213
              G  +D    FE+++   ++P +                         +L +    ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             + +++  +  EGRV ++ ++   M R       P+ +TY+T++     AG MD A ++
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRI---GVKPNIITYSTLIDGYCLAGKMDEATKL 536

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA M  +G+  + +TYN L+ GYC+  +++ A  L REM + + + PD+++YNI++ G  
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESSGVSPDIITYNIILQGLF 595

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVD 392
               +A A   +  +   G      +Y  ++     ++    A ++F  + L D  ++++
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD--LQLE 653

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
              +N+++    ++G  +EAK +   +  NG  P+V TY  +A  +
Sbjct: 654 TRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 210/455 (46%), Gaps = 35/455 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G LP+V  ++++++ L  A   D      K  +V+   V+        +   P+  
Sbjct: 225 MLDRGILPNVVTYNSIIAALCKAQAMD------KAMEVLTSMVK--------NGVMPNCR 270

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++   + G+PK+ +    +MH  G +PDV+TYN ++    +  R      + + +
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+   +TT+ +L+  Y   G L     ++  M          +  + +  Y+   +G
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA--KQG 388

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             D    VF K+    +NP             ++  Y T++      GRV D +R    M
Sbjct: 389 KVDQAMLVFSKMRQQGLNP-------------DTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               D    P ++ Y +++ +L      D+A++++ EM   G+  + I +N ++  +C++
Sbjct: 436 I---DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKE 492

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ ++++L   M     ++P++++Y+ LIDG+ L      A      M + G+ P  ++
Sbjct: 493 GRVIESEKLFDLMVR-IGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y TL+  +   S+ + A  +F EM     V  DI+ +N++++G  +      AK +   +
Sbjct: 552 YNTLINGYCKISRMEDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            E+G    ++TY  + +G+       EAL +++ +
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 130/259 (50%), Gaps = 9/259 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y  L+KG  +E R  + + +L  M   +     PD V+YTTV++   K G +D+A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELL-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                EM   G+  N +TYN ++   C+   +DKA E+L  M  +  + P+  +YN ++ 
Sbjct: 219 YGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNG-VMPNCRTYNSIVH 277

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+        A+ F  +M + G+ P  ++Y +LM     + +   A K+FD M +   +K
Sbjct: 278 GYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG-LK 336

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +I  +  L++GY   G + E   +++ M  NG +PN   +  L    +   K  +A+L+
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLV 396

Query: 451 WKEIKERCEVKKEGVNADS 469
           + ++++      +G+N D+
Sbjct: 397 FSKMRQ------QGLNPDT 409



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 177/421 (42%), Gaps = 53/421 (12%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P++ TY ++I  C  A R  L    L  +++ G  +    
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+       D   ++ +   +R   +  C  I  +   +   +   D++   E  E 
Sbjct: 129 FTPLLKGLCA--DKRTSDAMDIVLRRMTQLGC--IPNVFSYNILLKGLCDENRSQEALE- 183

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           LL    +   + P       P+   YTT++ G+  EG   D  +  G      D    P+
Sbjct: 184 LLQMMPDDGGDCP-------PDVVSYTTVINGFFKEG---DLDKAYGTYHEMLDRGILPN 233

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY ++++AL KA +MD+A +VL  M + GV  N  TYN ++ GYC   Q  +A   L+
Sbjct: 234 VVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           +M  D  +EPDVV+YN L+D          A   F+ M  RG+ P   +Y TL++ +A  
Sbjct: 294 KMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 371 SQPKLANKVFDEMLRD---PRVKV-------------------------------DIVAW 396
                 + + D M+R+   P   V                               D V +
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTY 412

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             ++   C+ G VE+A R  E+M +    P    Y SL + + +  K  +A  L  E+ +
Sbjct: 413 GTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 457 R 457
           R
Sbjct: 473 R 473



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 129/300 (43%), Gaps = 30/300 (10%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R   +   P+  TY  ++ +   AG +D     L  + + G   + I +  LLKG C 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 299 QLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAP 355
             +   A ++ LR M     I P+V SYNIL+ G    + S  AL     M   G    P
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPP 197

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SYTT++  F        A   + EML D  +  ++V +N ++   C+   +++A  +
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEML-DRGILPNVVTYNSIIAALCKAQAMDKAMEV 256

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M +NG  PN  TY S+ +G   + +P EA+   K++        +GV          
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS------DGV---------- 300

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------KKIYVEMHS 526
           +PD    ++L D   +     +A ++   M + G+ P  T Y         K   VEMH 
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 360


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 217/479 (45%), Gaps = 50/479 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V ++S ++  L   G  G  + +         +R  ++   V    P+  AYN V
Sbjct: 190 GCVPDVFSYSILLKSLCDQGKSGQADDL---------LRMMAEGGAVC--SPNVVAYNTV 238

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC-ARASRK---HLLVFVLERI 119
           ++     G   K   LF +M + G  PD++TYN ++  LC ARA  K    L   V +R+
Sbjct: 239 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 298

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L         T+ +L+  Y   G  + A  + + MR  R  +   +  L +   S    G
Sbjct: 299 LPNN-----WTYNNLIYGYSSTGQWKEAVRVFKEMR--RHSILPDVVTLSMLMGSLCKYG 351

Query: 180 DDDDDDEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYT 217
              +  +VF+ +     NP            +++  L+  T           AP+   + 
Sbjct: 352 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 411

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+K Y N G +   + +   MR   D+   PD VTY TV++AL + G MD A +   +M
Sbjct: 412 VLIKAYANCGMLDKAMIIFNEMR---DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 468

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              GV  ++  YN L++G+C    + KAKEL+ E+ ++  +  D+V ++ +I+    +  
Sbjct: 469 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVFFSSIINNLCKLGR 527

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   F+     G+ P  + Y+ LM  + L  + + A +VFD M+    ++ ++V + 
Sbjct: 528 VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV-SAGIEPNVVVYC 586

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            LV GYC++G ++E   +   M + G  P+   Y  + +G+  A +   A + + E+ E
Sbjct: 587 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTE 645



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 129/548 (23%), Positives = 220/548 (40%), Gaps = 106/548 (19%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 93  SAACRSGPALAVALFNRAASRAQ---GPRVLS---PTSHTYAILMDCCTRAHRPELALAF 146

Query: 81  FDQM---------------------------------H---EFGAKPDVLTYNVMIK-LC 103
           F Q+                                 H   E G  PDV +Y++++K LC
Sbjct: 147 FGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLC 206

Query: 104 ARASRKHLLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            +          L R++  G  +C   +  + +++  +   GD+  A             
Sbjct: 207 DQGKSGQ--ADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKA------------- 251

Query: 161 VCKIIREL-------DLEDYSSE----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
            C + +E+       DL  Y+S      +    D  E F + + N            K  
Sbjct: 252 -CDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN------------KRV 298

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN+  Y  L+ GY + G+  + VR+   MRR    +  PD VT + ++ +L K G +  
Sbjct: 299 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH---SILPDVVTLSMLMGSLCKYGKIKE 355

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR V   M   G   +  +YNI+L GY  +  +    +L   M  D  I PD  ++N+LI
Sbjct: 356 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDFYTFNVLI 414

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
             +        A+  FNEMR  G+ P  ++Y T++ A     +   A + F++M+ D  V
Sbjct: 415 KAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGV 473

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D  A+N L++G+C  G + +AK +I  +  NG + ++  + S+ N +    +  +A  
Sbjct: 474 APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQN 533

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           ++                D  +   L PD  +   L D         KAL +   M   G
Sbjct: 534 IF----------------DLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 577

Query: 510 IPPNKTKY 517
           I PN   Y
Sbjct: 578 IEPNVVVY 585



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 180/437 (41%), Gaps = 45/437 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R   LP V   S ++  L   G              +K  R   D   +    PD  +
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGK-------------IKEARDVFDTMAMKGQNPDVFS 374

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +LN  A  G       LFD M   G  PD  T+NV+IK  A        + +   + 
Sbjct: 375 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 434

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+   + T+++++AA    G ++ A      M +      K      ++ + +   G 
Sbjct: 435 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTH--GS 492

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E+  +++ N ++       L   F      +++++      GRV D   +     
Sbjct: 493 LLKAKELISEIMNNGMH-------LDIVF------FSSIINNLCKLGRVMDAQNIFDL-- 537

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +   HPD V Y+ ++      G M++A +V   M   G+  N + Y  L+ GYC+  
Sbjct: 538 -TVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIG 596

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID+   L REM     I+P  + Y+I+IDG      +  A   F+EM   GIA    +Y
Sbjct: 597 RIDEGLSLFREMLQRG-IKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTY 655

Query: 361 TTLMKAFALSSQPKLANKVFDEM------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
             +++           N+ FDE       LR   VK++I+  N +++G  +   VEEAK 
Sbjct: 656 NIVLRGL-------FKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKD 708

Query: 415 IIERMKENGFYPNVATY 431
           +   +  +   PNV TY
Sbjct: 709 LFASISRSRLVPNVVTY 725



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 182/411 (44%), Gaps = 44/411 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    + ++ +    GK K+   +FD M   G  PDV +YN+M+   A       +  +
Sbjct: 335 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 394

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDV----------CK 163
            + +L  GI     TF  L+ AY   G L+ A  I   MR+   + DV          C+
Sbjct: 395 FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 454

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           I              G  DD  E F +++   +             AP+   Y  L++G+
Sbjct: 455 I--------------GKMDDAMEKFNQMIDQGV-------------APDKYAYNCLIQGF 487

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
              G +     ++  +    +N  H D V ++++++ L K G +  A+ +      +G+ 
Sbjct: 488 CTHGSLLKAKELISEIM---NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 544

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            + + Y++L+ GYC   +++KA  +   M   A IEP+VV Y  L++G+  I      L+
Sbjct: 545 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNVVVYCTLVNGYCKIGRIDEGLS 603

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
            F EM  RGI P+ I Y+ ++     + +   A   F EM  +  + +DI  +N+++ G 
Sbjct: 604 LFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEM-TESGIAMDICTYNIVLRGL 662

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +    +EA  + + ++      N+ T  ++ +G+   R+  EA  L+  I
Sbjct: 663 FKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASI 713



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 183/448 (40%), Gaps = 75/448 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V +++ +++  A  G    V+   LFD+++                PD   
Sbjct: 363 MAMKGQNPDVFSYNIMLNGYATKG--CLVDMTDLFDLMLG-----------DGIAPDFYT 409

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A AN G   K + +F++M + G KPDV+TY  +I    R  +    +    +++
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----------DVCKIIREL 168
           + G+      +  L+  +   G L  A E I + M  G             ++CK+ R +
Sbjct: 470 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 529

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
           D ++            D V   +L +      +     + F         PN  +Y TL+
Sbjct: 530 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 589

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY   GR+ + + +    R        P  + Y+ ++  L +AG    A+    EMT  
Sbjct: 590 NGYCKIGRIDEGLSLF---REMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTES 646

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSA 339
           G+  +  TYNI+L+G  +    D+A  L +E+ A + KI  ++++ N +IDG        
Sbjct: 647 GIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI--NIITLNTMIDGMF------ 698

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
                    + R +   K  + ++ ++                     R+  ++V ++++
Sbjct: 699 ---------QTRRVEEAKDLFASISRS---------------------RLVPNVVTYSIM 728

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPN 427
           +    + GLVEEA+ +   M+  G  PN
Sbjct: 729 ITNLIKEGLVEEAEDMFSSMQNAGCEPN 756



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 141/352 (40%), Gaps = 57/352 (16%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P+  +P S  Y  LM       R    +   G + R        + +    ++    +A 
Sbjct: 117 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLR---TGLRVNIIIANHLLEGFCEAK 173

Query: 266 SMDRARQVLAEMT-RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI-EPDVV 323
             D A  +L   T  +G   +  +Y+ILLK  C Q +  +A +LLR MA+   +  P+VV
Sbjct: 174 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVV 233

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA----------------- 366
           +YN +IDGF    D   A   F EM  RGI P  ++Y +++ A                 
Sbjct: 234 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 293

Query: 367 ------------------FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
                             ++ + Q K A +VF EM R   +  D+V  +ML+   C+ G 
Sbjct: 294 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS-ILPDVVTLSMLMGSLCKYGK 352

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           ++EA+ + + M   G  P+V +Y  + NG +                + C V    +  D
Sbjct: 353 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYA---------------TKGCLVDMTDL-FD 396

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L   + PD    + L           KA+ I   M +HG+ P+   Y+ +
Sbjct: 397 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 448


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 202/464 (43%), Gaps = 71/464 (15%)

Query: 12  AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
            + TVV  + +SGD DG    VK                I S  +P+   Y  ++     
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVK--------------EMIASGCRPNVVIYTTLIKTFLQ 464

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
             +    +++  +M E G  PD+  YN +I   ++A R       L  ++E G+     T
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           + + ++ Y+   +   A+  V+ MRE      K++    + +Y  +            EK
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK------------EK 572

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           ++      S+   ++ +    +++ YT LM G     +V D   +   MR +      PD
Sbjct: 573 VIEAC---SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK---GIAPD 626

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
             +Y  +++   K G+M +A  +  EM   G+  N I YN+LL G+C+  +I+KAKELL 
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM------ 364
           EM+    + P+ V+Y  +IDG+    D A A   F+EM+ +G+ P    YTTL+      
Sbjct: 687 EMSVKG-LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRL 745

Query: 365 --------------KAFALSSQP--KLANKVF--------DEMLR-------DPRVKVDI 393
                         K  A S+ P   L N VF         E+L        D   K + 
Sbjct: 746 NDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPND 805

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           V +N++++  C+ G +E AK +  +M+     P V TY SL NG
Sbjct: 806 VTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 144/325 (44%), Gaps = 54/325 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN  IYTTL+K ++   R  D +R+L  M+ Q      PD   Y +++  L KA  MD A
Sbjct: 450 PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ---GIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD---------------- 314
           R  L EM   G+  N  TY   + GY +  +   A + ++EM +                
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 315 ------------------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                             D  I  D  +Y +L++G    D    A   F EMR +GIAP 
Sbjct: 567 YCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             SY  L+  F+     + A+ +FDEM+ +  +  +++ +NML+ G+CR G +E+AK ++
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           + M   G +PN  TY ++ +G   +    EA  L+ E+K +                 L 
Sbjct: 686 DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK----------------GLV 729

Query: 477 PDEELLDALADICVRAAFFRKALEI 501
           PD  +   L D C R     +A+ I
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITI 754



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 179/408 (43%), Gaps = 44/408 (10%)

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
           R   D  I+ D+K     Y  ++N      K     ++F +M   G  PDV +Y V+I  
Sbjct: 581 RSMVDQGILGDAK----TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREG 157
            ++         + + ++E G+T  +  +  L+  +   G++E A     E  V+ +   
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
               C II     + Y     GD  +   +F+++               K   P+S +YT
Sbjct: 697 AVTYCTII-----DGYCKS--GDLAEAFRLFDEMKL-------------KGLVPDSFVYT 736

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TL+ G      V   + + G  ++   +++ P    +  +++ + K G  +   +VL  +
Sbjct: 737 TLVDGCCRLNDVERAITIFGTNKKGCASSTAP----FNALINWVFKFGKTELKTEVLNRL 792

Query: 278 T-----RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
                 R G P N +TYNI++   C++  ++ AKEL  +M  +A + P V++Y  L++G+
Sbjct: 793 MDGSFDRFGKP-NDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITYTSLLNGY 850

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR----DPR 388
             +   A     F+E  A GI P  I Y+ ++ AF        A  + D+M      D  
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDG 910

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            K+ I     L+ G+ ++G +E A++++E M    + P+ AT   L N
Sbjct: 911 CKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 189/462 (40%), Gaps = 39/462 (8%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+L + M   G  P   TY+V+I    +  R      +L  +  +G++L   T+  L+  
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
            +   + + A+ +V  M     ++   + +  +   S   EG  +    +F+ ++ + + 
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMS--KEGVMEKAKALFDGMIASGLI 379

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P ++              Y +L++GY  E  V     +L  M+++    S     TY TV
Sbjct: 380 PQAQA-------------YASLIEGYCREKNVRQGYELLVEMKKRNIVIS---PYTYGTV 423

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           V  +  +G +D A  ++ EM   G   N + Y  L+K + Q  +   A  +L+EM +   
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG- 482

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I PD+  YN LI G         A +F  EM   G+ P   +Y   +  +  +S+   A+
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K   EM R+  V  + V    L+  YC+   V EA      M + G   +  TY  L NG
Sbjct: 543 KYVKEM-RECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601

Query: 438 ISLARKPGEALLLWKEIKER-------------------CEVKKEGVNADSDLPPPLKPD 478
           +    K  +A  +++E++ +                     ++K     D  +   L P+
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             + + L     R+    KA E++  M   G+ PN   Y  I
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTI 703



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 26/315 (8%)

Query: 232 TVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           T+ + GA++ +E        P   TY  ++  L K   ++ A+ +L EM  +GV  +  T
Sbjct: 255 TLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHT 314

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           Y++L+ G  +    D AK L+ EM      I+P +    I +     + + A AL  F+ 
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKAL--FDG 372

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M A G+ P   +Y +L++ +      +   ++  EM +   + +    +  +V+G C  G
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEM-KKRNIVISPYTYGTVVKGMCSSG 431

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            ++ A  I++ M  +G  PNV  Y +L        + G+A+ + KE+KE+          
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ---------- 481

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI---YVEM 524
                  + PD    ++L     +A    +A   +  M E+G+ PN   Y      Y+E 
Sbjct: 482 ------GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535

Query: 525 HSRMFTSKHASQARQ 539
                  K+  + R+
Sbjct: 536 SEFASADKYVKEMRE 550



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/365 (19%), Positives = 139/365 (38%), Gaps = 49/365 (13%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           ++  L  GY+ +G + + V +  +    E     P       ++ AL++   +D    V 
Sbjct: 153 LFGILFDGYIAKGYIEEAVFVFSSSMGLE---LVPRLSRCKVLLDALLRWNRLDLFWDVY 209

Query: 275 AEMTRIGVPANRITYNILLKGYCQ---------------------QLQIDKAKELLREMA 313
             M    V  +  TY++L+  +C+                      L +D A +L   M 
Sbjct: 210 KGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMI 269

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
               + P   +Y++LIDG   I     A +   EM + G++    +Y+ L+         
Sbjct: 270 CKGLV-PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNA 328

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             A  +  EM+    + +    ++  +    + G++E+AK + + M  +G  P    Y S
Sbjct: 329 DAAKGLVHEMVSHG-INIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKK--------EGVNADSDL-----------PPP 474
           L  G    +   +   L  E+K+R  V          +G+ +  DL              
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
            +P+  +   L    ++ + F  A+ ++  M+E GI P+   Y  + + +      +K  
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK----AKRM 503

Query: 535 SQARQ 539
            +AR 
Sbjct: 504 DEARS 508


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 216/473 (45%), Gaps = 33/473 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A   L K    + L  +M   G + D+ T+N++I       +  L + +
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCK 163
           L ++L++G      T  SLV  +     +  A ++V  M E G +            +CK
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRI 215
             R  D  D+  E E      + V    L N +  SS           ++ K   PN   
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y+ L+  ++  G+V +   +   M R    +  PD VTY+++V+ L     +D A Q+  
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRM---SIDPDIVTYSSLVNGLCLHDRIDEANQMFD 319

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G  A+ ++YN L+ G+C+  +++   +L REM+    +  + V+YN LI GF   
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV-SNTVTYNTLIQGFFQA 378

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            D   A  FF++M   GI+P   +Y  L+     + + + A  +F++M +   + +DIV 
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM-QKREMDLDIVT 437

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  ++ G C+ G VEEA  +   +   G  P++ TY ++ +G+       E   L+ ++K
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDA------LADICVRAAFFRKALEIV 502
           +   +K +   +D D+    +  +++L        L DI  ++   +KAL ++
Sbjct: 498 QEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDI--KSGVCKKALSLL 548



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 184/407 (45%), Gaps = 60/407 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD  AYNA++++     +       F ++   G +P+V+TY  ++     +SR      
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 246

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +++  IT  + T+ +L+ A+V  G +  A+                          
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK-------------------------- 280

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                      E+FE+++  SI+P             +   Y++L+ G     R+ +  +
Sbjct: 281 -----------ELFEEMVRMSIDP-------------DIVTYSSLVNGLCLHDRIDEANQ 316

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M   M  +       D V+Y T+++   KA  ++   ++  EM++ G+ +N +TYN L++
Sbjct: 317 MFDLMVSK---GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ Q   +DKA+E   +M D   I PD+ +YNIL+ G     +   AL  F +M+ R + 
Sbjct: 374 GFFQAGDVDKAQEFFSQM-DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 432

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++YTT+++    + + + A  +F   L    +K DIV +  ++ G C  GL+ E + 
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCS-LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491

Query: 415 IIERMKENGFYPNVATY--GSLANGISLARK---PGEALLLWKEIKE 456
           +  +MK+ G   N  T   G +     L +K    G A  L K+IK 
Sbjct: 492 LYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKS 538



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 59/223 (26%)

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           + ++++ A +L  +M   ++  P +V +N L+   + +      ++   +M   GI    
Sbjct: 62  RDIKLNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDL 120

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            ++  ++  F    Q  LA  +  +ML+   +P    D V    LV G+CR   V +A  
Sbjct: 121 YTFNIVINCFCCCFQVSLALSILGKMLKLGYEP----DRVTIGSLVNGFCRRNRVSDAVS 176

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++++M E G+ P++  Y ++ + +                   C+ K+  VN   D    
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSL-------------------CKTKR--VNDAFD---- 211

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                              FF++       +E  GI PN   Y
Sbjct: 212 -------------------FFKE-------IERKGIRPNVVTY 228


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 216/473 (45%), Gaps = 33/473 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A   L K    + L  +M   G + D+ T+N++I       +  L + +
Sbjct: 186 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 245

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCK 163
           L ++L++G      T  SLV  +     +  A ++V  M E G +            +CK
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 305

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRI 215
             R  D  D+  E E      + V    L N +  SS           ++ K   PN   
Sbjct: 306 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 365

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y+ L+  ++  G+V +   +   M R    +  PD VTY+++++ L     +D A Q+  
Sbjct: 366 YSALLDAFVKNGKVLEAKELFEEMVRM---SIDPDIVTYSSLINGLCLHDRIDEANQMFD 422

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G  A+ ++YN L+ G+C+  +++   +L REM+    +  + V+YN LI GF   
Sbjct: 423 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV-SNTVTYNTLIQGFFQA 481

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            D   A  FF++M   GI+P   +Y  L+     + + + A  +F++M +   + +DIV 
Sbjct: 482 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM-QKREMDLDIVT 540

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  ++ G C+ G VEEA  +   +   G  P++ TY ++ +G+       E   L+ ++K
Sbjct: 541 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 600

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDA------LADICVRAAFFRKALEIV 502
           +   +K +   +D D+    +  +++L        L DI  ++   +KAL ++
Sbjct: 601 QEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDI--KSGVCKKALSLL 651



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 203/439 (46%), Gaps = 43/439 (9%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M  +GY P+   ++T++  L     +   E++ L D +V +             +PD   
Sbjct: 791  MFVTGYQPNTVTFNTLIHGLFLH--NKASEAMALIDRMVAK-----------GCQPDLVT 837

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHL--LVFVLE 117
            Y  V+N     G       L ++M +   +P VL YN +I  LC     KH+   + + +
Sbjct: 838  YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC---KYKHMDDALNLFK 894

Query: 118  RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSS 175
             +   GI   + T+ SL++    +G    A  ++  M  R+   DV      +D    + 
Sbjct: 895  EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID----AF 950

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              EG   + ++++++++  SI+PS                Y++L+ G+    R+ +  +M
Sbjct: 951  VKEGKLVEAEKLYDEMVKRSIDPSIVT-------------YSSLINGFCMHDRLDEAKQM 997

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               M  +      PD VTY T++    K   ++   +V  EM++ G+  N +TYNIL++G
Sbjct: 998  FEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 1054

Query: 296  YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
              Q    D A+E+ +EM  D  + P++++YN L+DG         A+  F  ++   + P
Sbjct: 1055 LFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 1113

Query: 356  TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            T  +Y  +++    + + +    +F   L    VK D+VA+N ++ G+CR G  EEA  +
Sbjct: 1114 TIYTYNIMIEGMCKAGKVEDGWDLFCN-LSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 1172

Query: 416  IERMKENGFYPNVATYGSL 434
             + MKE+G  PN   Y +L
Sbjct: 1173 FKEMKEDGTLPNSGCYNTL 1191



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 194/436 (44%), Gaps = 53/436 (12%)

Query: 55   KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            +P+    +++LN   +  +  + + L DQM   G +P+ +T+N +I      ++    + 
Sbjct: 762  EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMA 821

Query: 115  VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            +++R++  G    + T+  +V      GD ++A  ++  M +G+ +   +I    ++   
Sbjct: 822  LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 881

Query: 175  SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                 DD             ++N   E  +  K   PN   Y++L+    N GR SD  R
Sbjct: 882  KYKHMDD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCNYGRWSDASR 926

Query: 235  MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            +L  M  ++ N   PD  T++ ++ A VK G +  A ++  EM +  +  + +TY+ L+ 
Sbjct: 927  LLSDMIERKIN---PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN 983

Query: 295  GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            G+C   ++D+AK++   M       PDVV+YN LI GF         +  F EM  RG+ 
Sbjct: 984  GFCMHDRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLV 1042

Query: 355  PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
               ++Y  L++    +    +A ++F EM+ D                            
Sbjct: 1043 GNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV 1102

Query: 387  ----PRVKVD--IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                 R K++  I  +N+++EG C+ G VE+   +   +   G  P+V  Y ++ +G   
Sbjct: 1103 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 1162

Query: 441  ARKPGEALLLWKEIKE 456
                 EA  L+KE+KE
Sbjct: 1163 KGSKEEADALFKEMKE 1178



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 191/468 (40%), Gaps = 77/468 (16%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            P    ++ +L+A A + K    + L +QM   G   +  TY+++I    R S+  L + V
Sbjct: 693  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 752

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            L +++++G    + T  SL+  Y     +  A  +V  M                     
Sbjct: 753  LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM--------------------- 791

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                             + PN+  + TL+ G     + S+ + +
Sbjct: 792  -----------------------------FVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 822

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            +  M  +      PD VTY  VV+ L K G  D A  +L +M +  +    + YN ++ G
Sbjct: 823  IDRMVAK---GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 879

Query: 296  YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             C+   +D A  L +EM +   I P+VV+Y+ LI         + A    ++M  R I P
Sbjct: 880  LCKYKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 938

Query: 356  TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
               +++ L+ AF    +   A K++DEM++   DP     IV ++ L+ G+C    ++EA
Sbjct: 939  DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP----SIVTYSSLINGFCMHDRLDEA 994

Query: 413  KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
            K++ E M     +P+V TY +L  G    ++  E + +++E+ +R               
Sbjct: 995  KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR--------------- 1039

Query: 473  PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              L  +    + L     +A     A EI   M   G+PPN   Y  +
Sbjct: 1040 -GLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 1086



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 184/406 (45%), Gaps = 60/406 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD  AYNA++++     +       F ++   G +P+V+TY  ++     +SR      
Sbjct: 290 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 349

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +++  IT  + T+ +L+ A+V  G +  A+                          
Sbjct: 350 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK-------------------------- 383

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                      E+FE+++  SI+P             +   Y++L+ G     R+ +  +
Sbjct: 384 -----------ELFEEMVRMSIDP-------------DIVTYSSLINGLCLHDRIDEANQ 419

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M   M  +       D V+Y T+++   KA  ++   ++  EM++ G+ +N +TYN L++
Sbjct: 420 MFDLMVSK---GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 476

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ Q   +DKA+E   +M D   I PD+ +YNIL+ G     +   AL  F +M+ R + 
Sbjct: 477 GFFQAGDVDKAQEFFSQM-DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 535

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++YTT+++    + + + A  +F   L    +K DIV +  ++ G C  GL+ E + 
Sbjct: 536 LDIVTYTTVIRGMCKTGKVEEAWSLFCS-LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 594

Query: 415 IIERMKENGFYPNVATY--GSLANGISLARK---PGEALLLWKEIK 455
           +  +MK+ G   N  T   G +     L +K    G A  L K+IK
Sbjct: 595 LYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIK 640



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 160/407 (39%), Gaps = 79/407 (19%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M+  G  P +  +  VV+ L   GD          D+    + K     +    +P    
Sbjct: 826  MVAKGCQPDLVTYGVVVNGLCKRGDT---------DLAFNLLNKMEQGKL----EPGVLI 872

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            YN +++           L LF +M   G +P+V+TY+ +I       R      +L  ++
Sbjct: 873  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 932

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD--LEDYSSENE 178
            E  I   + TF +L+ A+V  G L  AE +   M         + R +D  +  YSS   
Sbjct: 933  ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM---------VKRSIDPSIVTYSSLIN 983

Query: 179  G-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            G       D+  ++FE              ++ K   P+   Y TL+KG+    RV + +
Sbjct: 984  GFCMHDRLDEAKQMFE-------------FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 1030

Query: 234  RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
             +    R         + VTY  ++  L +AG  D A+++  EM   GVP N +TYN LL
Sbjct: 1031 EVF---REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 1087

Query: 294  KGYCQQLQIDKA-------------------KELLREMADDAKIE--------------- 319
             G C+  +++KA                     ++  M    K+E               
Sbjct: 1088 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 1147

Query: 320  PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            PDVV+YN +I GF        A   F EM+  G  P    Y TL++A
Sbjct: 1148 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 1194



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 131/594 (22%), Positives = 242/594 (40%), Gaps = 110/594 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++    P+V  +S ++     +G    +E+ +LF+   + VR   DPDIV+        
Sbjct: 354 MIKKKITPNVITYSALLDAFVKNGK--VLEAKELFE---EMVRMSIDPDIVT-------- 400

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y++++N      +  +  Q+FD M   G   DV++YN +I    +A R    + +   + 
Sbjct: 401 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 460

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ +L+  +   GD++ A+     M     D   I    D+  Y+    G 
Sbjct: 461 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM-----DFFGI--SPDIWTYNIL-LGG 512

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D+ E+ + L+        E  L   T       YTT+++G    G+V +   +  ++ 
Sbjct: 513 LCDNGELEKALVIFEDMQKREMDLDIVT-------YTTVIRGMCKTGKVEEAWSLFCSLS 565

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN---------- 290
            +      PD VTYTT++S L   G +     +  +M + G+  N  T +          
Sbjct: 566 LK---GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAEL 622

Query: 291 -----------ILLK----GYCQ---------------------------QLQIDKAKEL 308
                       LLK    G C+                           +L++D A  L
Sbjct: 623 IKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVAL 682

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             EM   ++  P ++ ++ L+     ++     ++   +M+  GI     +Y+ L+  F 
Sbjct: 683 FGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFC 741

Query: 369 LSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
             SQ  LA  V  +M++   +P    +IV  + L+ GYC    + EA  ++++M   G+ 
Sbjct: 742 RRSQLPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 797

Query: 426 PNVATYGSLANGISLARKPGEAL-LLWKEIKERCE-------VKKEGV--NADSDLP--- 472
           PN  T+ +L +G+ L  K  EA+ L+ + + + C+       V   G+    D+DL    
Sbjct: 798 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 857

Query: 473 ------PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                   L+P   + + + D   +      AL +   ME  GI PN   Y  +
Sbjct: 858 LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 911



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 100/226 (44%), Gaps = 24/226 (10%)

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           + ++++ A +L  +M   ++  P +V +N L+   + +      ++   +M   GI    
Sbjct: 165 RDIKLNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDL 223

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            ++  ++  F    Q  LA  +  +ML+   +P    D V    LV G+CR   V +A  
Sbjct: 224 YTFNIVINCFCCCFQVSLALSILGKMLKLGYEP----DRVTIGSLVNGFCRRNRVSDAVS 279

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++++M E G+ P++  Y ++ + +   ++  +A   +KEI+ +                 
Sbjct: 280 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK----------------G 323

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++P+     AL +    ++ +  A  +++ M +  I PN   Y  +
Sbjct: 324 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSAL 369



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M+  G  P++  ++T++  L     +G +E   +    ++R          S  +P    
Sbjct: 1071 MVSDGVPPNIMTYNTLLDGLCK---NGKLEKAMVVFEYLQR----------SKMEPTIYT 1117

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            YN ++      GK +    LF  +   G KPDV+ YN MI    R   K     + + + 
Sbjct: 1118 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 1177

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
            E G       + +L+ A +  GD E +  +++ MR
Sbjct: 1178 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 1212


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/491 (22%), Positives = 219/491 (44%), Gaps = 55/491 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  +N ++ A    G+    L +FD M   G  P V+TY++++    + S     + +
Sbjct: 249 PDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMAL 308

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCK 163
           L+ +   G    + T+  L+ A    GD++ A  I+  +                + +C 
Sbjct: 309 LDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCG 368

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF-----------APN 212
             R  ++E+  +E   ++   DEV    +  S+    +  L+ +               +
Sbjct: 369 SERWKEVEELLAEMTSNNCAPDEVTFNTIVTSL---CQQGLVDRAIEVVDHMSEHGCVAD 425

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y++++ G  + GRV D V +L    R +     PD + YTTV+  L      +RA +
Sbjct: 426 IVTYSSILDGLCDVGRVDDAVELLS---RLKSYGCKPDTIAYTTVLKGLCSTEQWERAEE 482

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           ++AEM     P + +T+N ++   CQ+  +D+A  ++ +M+++    PD+V+YN +IDG 
Sbjct: 483 LMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENG-CSPDIVTYNCIIDGL 541

Query: 333 I---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
                IDD   A+   +++++ G  P  +++ TL+K      + + A ++   M+R    
Sbjct: 542 CNESCIDD---AMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRS-NC 597

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D + +N ++   C+ GL+ +A   ++ M ENG  PN +TY  + + +  A K   AL 
Sbjct: 598 PPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALE 657

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L   +                      PD    + +     +A    +AL+++  M  +G
Sbjct: 658 LLSGMTNG------------------TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNG 699

Query: 510 IPPNKTKYKKI 520
           + P+ T Y+ +
Sbjct: 700 LCPDTTTYRSL 710



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/481 (22%), Positives = 197/481 (40%), Gaps = 81/481 (16%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN ++N     G+ +   +L + M      PD  T+N +I+ LC R      L  V + +
Sbjct: 222 YNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALA-VFDDM 277

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L  G +  + T+  L+ A         A  ++  MR                        
Sbjct: 278 LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRA----------------------- 314

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                      K   P+   Y  L+    NEG V + + +L  +
Sbjct: 315 ---------------------------KGCEPDIVTYNVLINAMCNEGDVDEALNILSNL 347

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                +   PD VTYT V+ +L  +       ++LAEMT      + +T+N ++   CQQ
Sbjct: 348 ---PSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQ 404

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +D+A E++  M++   +  D+V+Y+ ++DG   +     A+   + +++ G  P  I+
Sbjct: 405 GLVDRAIEVVDHMSEHGCVA-DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIA 463

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YTT++K    + Q + A ++  EML       D V +N +V   C+ GLV+ A R++E+M
Sbjct: 464 YTTVLKGLCSTEQWERAEELMAEMLCS-DCPPDEVTFNTVVASLCQKGLVDRAIRVVEQM 522

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP------- 472
            ENG  P++ TY  + +G+       +A+ L  +++  C  K + V  ++ L        
Sbjct: 523 SENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQS-CGCKPDIVTFNTLLKGLCGVDR 581

Query: 473 -------------PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                            PDE   + +     +     +A+E +  M E+G  PN + Y  
Sbjct: 582 WEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSI 641

Query: 520 I 520
           +
Sbjct: 642 V 642



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 207/476 (43%), Gaps = 76/476 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P V  +S ++   A   + G  +++ L D   +   K  +PDIV+        
Sbjct: 277 MLHRGCSPSVVTYSILLD--ATCKESGYRQAMALLD---EMRAKGCEPDIVT-------- 323

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN ++NA  N G   + L +   +   G KPD +TY  ++K LC     K     V E +
Sbjct: 324 YNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKE----VEELL 379

Query: 120 LEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            EM    C     TF ++V +    G ++ A  +V  M E    V  I+    + D   +
Sbjct: 380 AEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSE-HGCVADIVTYSSILDGLCD 438

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--PNSRIYTTLMKGYMNEGRVSDTVR 234
             G  DD  E+  +L               K++   P++  YTT++KG  +  +      
Sbjct: 439 -VGRVDDAVELLSRL---------------KSYGCKPDTIAYTTVLKGLCSTEQWERAEE 482

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M   +     PD VT+ TVV++L + G +DRA +V+ +M+  G   + +TYN ++ 
Sbjct: 483 LMAEMLCSD---CPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIID 539

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C +  ID A ELL ++      +PD+V++N L+ G   +D    A      M      
Sbjct: 540 GLCNESCIDDAMELLSDL-QSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCP 598

Query: 355 PTKISYTTLMKAF--------ALSSQPKLANK-----------VFDEMLRDPRVKV---- 391
           P ++++ T++ +         A+ +   +A             V D +L+  + +     
Sbjct: 599 PDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALEL 658

Query: 392 ---------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
                    D++ +N ++    + G +EEA  ++  M  NG  P+  TY SLA G+
Sbjct: 659 LSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGV 714



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 24/272 (8%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  V    ++  L   G +  A +V A +   G  A  +TYN ++ GYC+  +I+ A+ L
Sbjct: 185 PPVVPCNILIKRLCSDGRVSDAERVFAAL---GPSATVVTYNTMVNGYCRAGRIEDARRL 241

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           +  M       PD  ++N LI    +      AL  F++M  RG +P+ ++Y+ L+ A  
Sbjct: 242 INGM----PFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATC 297

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             S  + A  + DEM R    + DIV +N+L+   C  G V+EA  I+  +  +G  P+ 
Sbjct: 298 KESGYRQAMALLDEM-RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDA 356

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY  +   +  + +       WKE++   E+  E  + +        PDE   + +   
Sbjct: 357 VTYTPVLKSLCGSER-------WKEVE---ELLAEMTSNNC------APDEVTFNTIVTS 400

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +A+E+V  M EHG   +   Y  I
Sbjct: 401 LCQQGLVDRAIEVVDHMSEHGCVADIVTYSSI 432



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 181/438 (41%), Gaps = 49/438 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +   P    ++T+V+ L   G         L D  ++ V   S+   V+D       
Sbjct: 382 MTSNNCAPDEVTFNTIVTSLCQQG---------LVDRAIEVVDHMSEHGCVAD----IVT 428

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y+++L+   ++G+    ++L  ++  +G KPD + Y  ++K LC+    +       E +
Sbjct: 429 YSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWER----AEELM 484

Query: 120 LEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            EM  + C     TF ++VA+    G ++ A  +V+ M E       +     ++     
Sbjct: 485 AEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLC-- 542

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
           NE   DD  E+   L      P             +   + TL+KG     R  D  +++
Sbjct: 543 NESCIDDAMELLSDLQSCGCKP-------------DIVTFNTLLKGLCGVDRWEDAEQLM 589

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M R       PD +T+ TV+++L + G + +A + L  M   G   N  TY+I++   
Sbjct: 590 ANMMRSN---CPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDAL 646

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            +  +   A ELL  M +     PD+++YN +I           AL     M + G+ P 
Sbjct: 647 LKAGKAQAALELLSGMTNGT---PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPD 703

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             +Y +L  A+ +  +      V   MLR   D  +  D   +N ++ G+CR    + A 
Sbjct: 704 TTTYRSL--AYGVCREDGTDRAV--RMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAI 759

Query: 414 RIIERMKENGFYPNVATY 431
                M  +G  P+ +TY
Sbjct: 760 DCFAHMVSSGCMPDESTY 777



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 146/376 (38%), Gaps = 61/376 (16%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + SD  PD   +N V+ +    G   + +++ +QM E G  PD++TYN +I      S  
Sbjct: 488 LCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCI 547

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
              + +L  +   G    + TF +L+    G    E AE   Q M    R  C    EL 
Sbjct: 548 DDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAE---QLMANMMRSNCPP-DELT 603

Query: 170 LEDYSSE--NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                +    +G      E  + +  N                PNS  Y+ ++   +  G
Sbjct: 604 FNTVITSLCQKGLLTQAIETLKIMAENGC-------------VPNSSTYSIVVDALLKAG 650

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           +    + +L  M         PD +TY TV+S L KAG M+ A  +L  M   G+  +  
Sbjct: 651 KAQAALELLSGMTN-----GTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTT 705

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY  L  G C++   D+A  +LR +  D  + PD   YN ++ GF     +  A+  F  
Sbjct: 706 TYRSLAYGVCREDGTDRAVRMLRRV-QDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAH 764

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M + G  P + +Y  L++A A                                      G
Sbjct: 765 MVSSGCMPDESTYVILLEALAYG------------------------------------G 788

Query: 408 LVEEAKRIIERMKENG 423
           L++EAKR++  +   G
Sbjct: 789 LLDEAKRLLASLCSLG 804


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/512 (24%), Positives = 212/512 (41%), Gaps = 91/512 (17%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF--- 114
           ++ ++ V+ + + L    K L +       G  P VL+YN ++    R+ R   + F   
Sbjct: 134 SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRN--ISFAEN 191

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V + +LE  ++  + T+  L+  +   G++++A T+   M                    
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKME------------------- 232

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                           K   PN   Y TL+ GY    ++ D  +
Sbjct: 233 -------------------------------TKGCLPNVVTYNTLIDGYCKLRKIDDGFK 261

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L +M  +      P+ ++Y  V++ L + G M     VL EM R G   + +TYN L+K
Sbjct: 262 LLRSMALK---GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++    +A  +  EM     + P V++Y  LI       +   A+ F ++MR RG+ 
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHG-LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P + +YTTL+  F+       A +V  EM  D      +V +N L+ G+C  G +E+A  
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREM-NDNGFSPSVVTYNALINGHCVTGKMEDAIA 436

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------C 458
           ++E MKE G  P+V +Y ++ +G   +    EAL + +E+ E+                C
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496

Query: 459 EVKKEGVNAD---SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           E ++     D     L   L PDE    AL +         KAL++   M E G+ P+  
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556

Query: 516 KYKKIYVEMHSRMFTSKHASQARQDRRRERKR 547
            Y  +   ++            +Q R RE KR
Sbjct: 557 TYSVLINGLN------------KQSRTREAKR 576



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 200/455 (43%), Gaps = 65/455 (14%)

Query: 11  KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIV------SDSKPDTAAYNAV 64
           KA S V    A     G +    + D  ++  R  S  + V      S   P+   YN +
Sbjct: 152 KALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNIL 211

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM-G 123
           +      G     L LFD+M   G  P+V+TYN +I    +  RK    F L R + + G
Sbjct: 212 IRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL-RKIDDGFKLLRSMALKG 270

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-RDVCKIIRELDLEDYSSENEGDDD 182
           +   + ++  ++                   REGR ++V  ++ E++   YS        
Sbjct: 271 LEPNLISYNVVINGLC---------------REGRMKEVSFVLTEMNRRGYSL------- 308

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
             DEV                            Y TL+KGY  EG     + M   M R 
Sbjct: 309 --DEV---------------------------TYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 P  +TYT+++ ++ KAG+M+RA + L +M   G+  N  TY  L+ G+ Q+  +
Sbjct: 340 ---GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A  +LREM D+    P VV+YN LI+G  +      A+    +M+ +G++P  +SY+T
Sbjct: 397 NEAYRVLREMNDNG-FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++  F  S     A +V  EM+ +  +K D + ++ L++G+C     +EA  + E M   
Sbjct: 456 VLSGFCRSYDVDEALRVKREMV-EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G  P+  TY +L N   +     +AL L  E+ E+
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 209/470 (44%), Gaps = 50/470 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAA--SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M   G LP+V  ++T++         DDG       F ++     K  +P+++S      
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDG-------FKLLRSMALKGLEPNLIS------ 277

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YN V+N     G+ K+   +  +M+  G   D +TYN +IK   +    H  + +   
Sbjct: 278 --YNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +L  G+T  + T+ SL+ +    G++  A   +  MR   R +C   R           +
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR--VRGLCPNERTYTTLVDGFSQK 393

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G  ++   V  ++  N              F+P+   Y  L+ G+   G++ D + +L  
Sbjct: 394 GYMNEAYRVLREMNDNG-------------FSPSVVTYNALINGHCVTGKMEDAIAVLED 440

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M+ +      PD V+Y+TV+S   ++  +D A +V  EM   G+  + ITY+ L++G+C+
Sbjct: 441 MKEK---GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           Q +  +A +L  EM     + PD  +Y  LI+ + +  D   AL   NEM  +G+ P  +
Sbjct: 498 QRRTKEACDLYEEML-RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM--------------LVEGYC 404
           +Y+ L+      S+ + A ++  ++  +  V  D+    +              L++G+C
Sbjct: 557 TYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFC 616

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             G++ EA ++ E M      P+   Y  + +G   A    +A  L+KE+
Sbjct: 617 MKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 208/477 (43%), Gaps = 72/477 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RS   P + +++ ++S LA          +K +  V     +      +S    D   
Sbjct: 60  MMRSTPTPSLSSFNHLLSGLA---------KIKHYSQVFSLYNQMR----LSGLSSDRCT 106

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N +LN   N+ + ++    F  +   G  P+++TYN +IK      R      +  R+ 
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDV-CK---IIRELDLEDYS 174
           ++G T  + T+ +L+    G G++ IA  + Q M     R ++ CK   I   + ++   
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G +D+  ++FE++    + PS                Y +L+ G+   G+  ++ R
Sbjct: 227 K--VGREDEAKQLFEEMKTQGMIPSIIS-------------YNSLIHGFCCAGKWEESKR 271

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M    D    PD VT+  ++  L K G +  A+++L  M   G+  + +TYN L++
Sbjct: 272 LLDEML---DQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIE 328

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C    ++ A+EL   M      EPDV+SYN+LI+G+        A+  +NEM   G  
Sbjct: 329 GFCMVGDLNSARELFVSMPSKG-CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKR 387

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM------------------------------- 383
           P  I+Y +L+K   L+ +   A K+F  M                               
Sbjct: 388 PNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKL 447

Query: 384 ---LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
              L+    K++I   N L++G C+ G +E A  + E++   G  PNV TY  + +G
Sbjct: 448 FTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHG 504



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 211/467 (45%), Gaps = 32/467 (6%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   P  +++N +L+  A +    +   L++QM   G   D  T N+++      +R   
Sbjct: 63  STPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLRE 122

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
                  IL  G +  + T+ +L+        L +   I +A R   R + K+    D+ 
Sbjct: 123 GFAAFAGILRRGYSPNIVTYNTLIKG------LCMEHRISEATRLFLR-MQKLGCTPDVV 175

Query: 172 DYSSENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            Y +  +G     +  +  KL    +N  S   +  K   PN   Y  ++ G    GR  
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCK---PNVITYNIIVDGLCKVGRED 232

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  ++   M+ Q      P  ++Y +++     AG  + ++++L EM   G+  + +T+N
Sbjct: 233 EAKQLFEEMKTQ---GMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFN 289

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           +L+   C++ ++ +AK+LL  M +   I PD+V+YN LI+GF ++ D   A   F  M +
Sbjct: 290 VLIDTLCKEGKVIEAKKLLGVMIESG-IVPDLVTYNSLIEGFCMVGDLNSARELFVSMPS 348

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P  ISY  L+  ++ + + + A K+++EML   + + +++ ++ L++G    G V+
Sbjct: 349 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK-RPNVITYDSLLKGIFLAGKVD 407

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +AK++   MK +G   N  TYG   +G+       EA+ L+ E+K               
Sbjct: 408 DAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKS-------------- 453

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                K + E L+ L D   +A     A E+   +   G  PN   Y
Sbjct: 454 --SNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTY 498



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 200/455 (43%), Gaps = 37/455 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P V  + T++  L  +G+     ++KL   ++  + ++       + KP+   
Sbjct: 165 MQKLGCTPDVVTYGTLIKGLCGTGNINI--ALKLHQEMLNDISRYE-----INCKPNVIT 217

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++    +G+  +  QLF++M   G  P +++YN +I     A +      +L+ +L
Sbjct: 218 YNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEML 277

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE-- 178
           + G+   M TF  L+      G +  A+ ++  M E       I+   DL  Y+S  E  
Sbjct: 278 DQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES-----GIVP--DLVTYNSLIEGF 330

Query: 179 ---GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              GD +   E+F  +      PS       K   P+   Y  L+ GY    +V + +++
Sbjct: 331 CMVGDLNSARELFVSM------PS-------KGCEPDVISYNVLINGYSKTLKVEEAMKL 377

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M         P+ +TY +++  +  AG +D A+++ + M   G+  N  TY I L G
Sbjct: 378 YNEMLLV---GKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDG 434

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   + +A +L  E+   +  + ++ + N LIDG         A   F ++   G  P
Sbjct: 435 LCKNDCLFEAMKLFTEL-KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEP 493

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YT ++  F    Q   AN +  +M  +     DI+ +N L+ G+     +EE  ++
Sbjct: 494 NVVTYTIMIHGFCREGQVDKANVLIQKMEANG-CTPDIITYNTLMRGFYESNKLEEVVQL 552

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           + RM +    P+  T   + + +S   K  E L L
Sbjct: 553 LHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 587



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 26/279 (9%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P   ++  ++S L K     +   +  +M   G+ ++R T NILL   C    +++ +E 
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCN---VNRLREG 123

Query: 309 LREMADDAK--IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
               A   +    P++V+YN LI G  +    + A   F  M+  G  P  ++Y TL+K 
Sbjct: 124 FAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKG 183

Query: 367 FALSSQPKLANKVFDEMLRDP-----RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
              +    +A K+  EML D        K +++ +N++V+G C++G  +EAK++ E MK 
Sbjct: 184 LCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKT 243

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  P++ +Y SL +G   A K       W+E K            D  L   L+PD   
Sbjct: 244 QGMIPSIISYNSLIHGFCCAGK-------WEESKRL---------LDEMLDQGLQPDMVT 287

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            + L D   +     +A +++  M E GI P+   Y  +
Sbjct: 288 FNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSL 326


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 216/479 (45%), Gaps = 50/479 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V ++S ++  L   G  G  + +         +R  ++   V    P+  AYN V
Sbjct: 180 GCVPDVFSYSILLKSLCDQGKSGQADDL---------LRMMAEGGAVC--SPNVVAYNTV 228

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC-ARASRK---HLLVFVLERI 119
           ++     G   K   LF +M + G  PD++TYN ++  LC ARA  K    L   V +R+
Sbjct: 229 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L         T+ +L+  Y   G  + A  + + MR  R  +   +  L +   S    G
Sbjct: 289 LPNN-----WTYNNLIYGYSSTGQWKEAVRVFKEMR--RHSILPDVVTLSMLMGSLCKYG 341

Query: 180 DDDDDDEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYT 217
              +  +VF+ +     NP            +++  L+  T           AP+   + 
Sbjct: 342 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 401

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+K Y N G +   + +   MR   D+   PD VTY TV++AL + G MD A +   +M
Sbjct: 402 VLIKAYANCGMLDKAMIIFNEMR---DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 458

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              GV  ++  YN L++G+C    + KAKEL+ E+ ++  +  D+V ++ +I+    +  
Sbjct: 459 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVFFSSIINNLCKLGR 517

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   F+     G+ P  + Y  LM  + L  + + A +VFD M+    ++ ++V + 
Sbjct: 518 VMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV-SAGIEPNVVGYG 576

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            LV GYC++G ++E   +   M + G  P+   Y  + +G+  A +   A + + E+ E
Sbjct: 577 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTE 635



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/523 (23%), Positives = 223/523 (42%), Gaps = 50/523 (9%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 83  SAACRSGPALAVALFNRAASRAQ---GPRVLS---PTSHTYAILMDCCTRAHRPELALAF 136

Query: 81  FDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           F Q+   G + +++  N +++  C        L  +L R  E+G    + ++  L+ +  
Sbjct: 137 FGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLC 196

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP- 198
             G    A+ +++ M EG       +   +        EGD +   ++F++++   I P 
Sbjct: 197 DQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPD 256

Query: 199 ------------------SSEPPL---LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                              +E  L   + K   PN+  Y  L+ GY + G+  + VR+  
Sbjct: 257 LVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFK 316

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            MRR    +  PD VT + ++ +L K G +  AR V   M   G   +  +YNI+L GY 
Sbjct: 317 EMRRH---SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 373

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
            +  +    +L   M  D  I PD  ++N+LI  +        A+  FNEMR  G+ P  
Sbjct: 374 TKGCLVDMTDLFDLMLGDG-IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDV 432

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++Y T++ A     +   A + F++M+ D  V  D  A+N L++G+C  G + +AK +I 
Sbjct: 433 VTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 491

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
            +  NG + ++  + S+ N +    +  +A  ++                D  +   L P
Sbjct: 492 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF----------------DLTVNVGLHP 535

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D  + + L D         KAL +   M   GI PN   Y  +
Sbjct: 536 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 578



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/524 (21%), Positives = 211/524 (40%), Gaps = 84/524 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R   LP V   S ++  L   G              +K  R   D   +    PD  +
Sbjct: 318 MRRHSILPDVVTLSMLMGSLCKYGK-------------IKEARDVFDTMAMKGQNPDVFS 364

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +LN  A  G       LFD M   G  PD  T+NV+IK  A        + +   + 
Sbjct: 365 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 424

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+   + T+++++AA                       +C+I              G 
Sbjct: 425 DHGVKPDVVTYRTVIAA-----------------------LCRI--------------GK 447

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD  E F +++   +             AP+   Y  L++G+   G +     ++  + 
Sbjct: 448 MDDAMEKFNQMIDQGV-------------APDKYAYNCLIQGFCTHGSLLKAKELISEIM 494

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +N  H D V ++++++ L K G +  A+ +      +G+  + + YN+L+ GYC   
Sbjct: 495 ---NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG 551

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++KA  +   M   A IEP+VV Y  L++G+  I      L+ F EM  RGI P+ I Y
Sbjct: 552 KMEKALRVFDAMVS-AGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILY 610

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + ++     + +   A   F EM  +  + +DI  +N+++ G  +    +EA  + + ++
Sbjct: 611 SIIIDGLFEAGRTVPAKMKFHEM-TESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELR 669

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
                 N+ T  ++ +G+   R+  EA  L+  I              S L P +     
Sbjct: 670 AMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR------------SRLVPSVVTYSI 717

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
           ++  L    ++     +A ++ + M+  G  PN      +  E+
Sbjct: 718 MITNL----IKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVREL 757


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 215/474 (45%), Gaps = 40/474 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V ++S ++  L   G  G  + +         +R  ++   V    PD  AY  V
Sbjct: 181 GCVPDVFSYSILLKSLCDQGKSGQADDL---------LRMMAEGGAVC--SPDVVAYTTV 229

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G   K   LF +M + G  PD++TY+ ++    +A         L +++  G+
Sbjct: 230 IDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGV 289

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+ +L+  Y   G  + A  + + MR  R  +   +  L++   S    G   + 
Sbjct: 290 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR--RHSILPDVVTLNMLMGSLCKYGKIKEA 347

Query: 185 DEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYTTLMKG 222
            +VF+ +     NP            +++  L+  T           AP+   ++ L+K 
Sbjct: 348 RDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKA 407

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           Y N G +   + +   MR   D+   PD VTYTTV++AL + G MD A +   +M   GV
Sbjct: 408 YANCGMLDKAMIIFNEMR---DHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGV 464

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             ++  Y+ L++G+C    + KAKEL+ E+ ++  +  D+V ++ +I+    +     A 
Sbjct: 465 APDKYAYHCLIQGFCTHGSLLKAKELILEIMNNG-MRLDIVFFSSIINNLCKLGRIMDAQ 523

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F+     G  P  + Y+ LM  + L  + + A +VFD M+    ++ ++V +  LV G
Sbjct: 524 NIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV-SAGIEPNVVVYGTLVNG 582

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           YC++G ++E   +   M + G  P+   Y  + +G+ +A +   A + + E+ E
Sbjct: 583 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTE 636



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 196/461 (42%), Gaps = 60/461 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP    ++ ++   +++G     E+V++F    K +R+ S         PD   
Sbjct: 284 MVNKGVLPDNWTYNNLIYGYSSTGQ--WKEAVRVF----KEMRRHS-------ILPDVVT 330

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++ +    GK K+   +FD M   G  PDV +Y +M+   A       +  + + +L
Sbjct: 331 LNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLML 390

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSE--- 176
             GI   + TF  L+ AY   G L+ A  I   MR+ G +         D+  Y++    
Sbjct: 391 GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKP--------DVVTYTTVIAA 442

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEP-PLLPKTFAPNSRIYTT--LMKGYMNEGR--- 228
               G  DD  E F +++   + P       L + F  +  +     L+   MN G    
Sbjct: 443 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLD 502

Query: 229 ---VSDTVRMLGAMRRQEDN----------ASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
               S  +  L  + R  D             HPD V Y+ ++      G M++A +V  
Sbjct: 503 IVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFD 562

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G+  N + Y  L+ GYC+  +ID+   L REM     I+P  + YNI+IDG  + 
Sbjct: 563 AMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKG-IKPSTILYNIIIDGLFVA 621

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------LRDPRV 389
             +  A   F+EM   GIA  K +Y  +++ F         N+ FDE       LR   V
Sbjct: 622 GRTVPAKVKFHEMTESGIAINKCTYNIVLRGF-------FKNRCFDEAIFLFKELRAMNV 674

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           K+DI+  N ++ G  +   VEEAK +   +  +G  P V T
Sbjct: 675 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 225/528 (42%), Gaps = 60/528 (11%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 84  SAACGSGPALAVALFNRAASRAQ---GPRVLS---PTSHTYAILMDCCTRAHRPELALAF 137

Query: 81  FDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           F Q+   G + D++  N ++K  C        L  +L R  E+G    + ++  L+ +  
Sbjct: 138 FGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLC 197

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDDDEVFEKLLPN 194
             G    A+ +++ M EG   VC      D+  Y++       EGD +   ++F++++  
Sbjct: 198 DQGKSGQADDLLRMMAEGGA-VC----SPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQR 252

Query: 195 SINP-----SSEPPLLPKTFA-----------------PNSRIYTTLMKGYMNEGRVSDT 232
            I P     SS    L K  A                 P++  Y  L+ GY + G+  + 
Sbjct: 253 GIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEA 312

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           VR+   MRR    +  PD VT   ++ +L K G +  AR V   M   G   +  +Y I+
Sbjct: 313 VRVFKEMRRH---SILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIM 369

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L GY  +  +    +L   M  D  I PD+ ++++LI  +        A+  FNEMR  G
Sbjct: 370 LNGYATKGCLVDMTDLFDLMLGDG-IAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHG 428

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++YTT++ A     +   A + F++M+ D  V  D  A++ L++G+C  G + +A
Sbjct: 429 VKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYHCLIQGFCTHGSLLKA 487

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           K +I  +  NG   ++  + S+ N +    K G        I +   +    VN      
Sbjct: 488 KELILEIMNNGMRLDIVFFSSIINNLC---KLGR-------IMDAQNIFDLTVNVGQ--- 534

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               PD  +   L D         KAL +   M   GI PN   Y  +
Sbjct: 535 ---HPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTL 579


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 221/464 (47%), Gaps = 37/464 (7%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           DS     +   ++N     GKP++   +F  + E G KP +++Y  ++       R   +
Sbjct: 8   DSCRTVRSRTKLMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSI 67

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLE 171
             ++ ++ E G+      F +++ A+   G++E A ET  +    G +        L ++
Sbjct: 68  YSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTL-IK 126

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y     G  ++  ++ E L+    N             PN R Y  L++ + N+ R+++
Sbjct: 127 GYGI--AGKPEESVKLLE-LMSQEGN-----------VKPNLRTYNVLVRAWCNKKRITE 172

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              ++  M     +   PD VTY T+ +A  + G++D+A  V+ EM   GV  N  T  I
Sbjct: 173 AWNVVYKMI---ASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGI 229

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++ GYC++ +I +A      M  +  I P++V +N LI GF+ I D  G     N M   
Sbjct: 230 IMSGYCKEGRIREALRFAYRM-KELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEF 288

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P  I+++T+M A++ +   +   ++FD+M++   ++ D  A+++L +GY R    E+
Sbjct: 289 GVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVK-AGIEPDAHAYSILAKGYVRAQEPEK 347

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A+ ++  M ++GF PNV  + ++ +G   A K   A+ ++ ++ +R             +
Sbjct: 348 AEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQR------------GI 395

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            P LK  E L+   A+   R  +  KA EI+  M E  + P K+
Sbjct: 396 SPNLKTFETLIWGFAE--ARQPW--KAEEILQIMTEFEVQPEKS 435



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 202/454 (44%), Gaps = 73/454 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P + +++T+++ L            K FD +   + +  +  +     PD+  
Sbjct: 39  LIEGGHKPSLISYTTLLAALTMQ---------KRFDSIYSIISQVEENGM----NPDSIF 85

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NAV+NA +  G  +  ++ F +M E G KP   TYN +IK    A +    V +LE + 
Sbjct: 86  FNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMS 145

Query: 121 EMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS---- 175
           + G +   + T+  LV A+     +  A  +V  M      +   I+  D+  Y++    
Sbjct: 146 QEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKM------IASGIQP-DVVTYNTIATA 198

Query: 176 -ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G  D  + V  ++  N +              PN R    +M GY  EGR+ + +R
Sbjct: 199 YAQKGALDQAEGVILEMQNNGVQ-------------PNERTCGIIMSGYCKEGRIREALR 245

Query: 235 MLGAMRR--------------------------------QEDNASHPDHVTYTTVVSALV 262
               M+                                  E+    PD +T++T+++A  
Sbjct: 246 FAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWS 305

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
            AG M++ R++  +M + G+  +   Y+IL KGY +  + +KA+ELL  M      +P+V
Sbjct: 306 TAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSG-FQPNV 364

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           V +  +I G+        A+  F++M  RGI+P   ++ TL+  FA + QP  A ++  +
Sbjct: 365 VIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEIL-Q 423

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           ++ +  V+ +     ++ E +   G+ +EA R++
Sbjct: 424 IMTEFEVQPEKSTMLLVAEAWRATGMTKEANRLL 457



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 163/363 (44%), Gaps = 41/363 (11%)

Query: 159 RDVCKIIRE-LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
           +D C+ +R    L ++  E +G   + + +F  L    I    +P L+          YT
Sbjct: 7   KDSCRTVRSRTKLMNFLVE-KGKPQEAESIFYSL----IEGGHKPSLIS---------YT 52

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TL+     + R      ++  +   E+N  +PD + +  V++A  ++G+M+ A +   +M
Sbjct: 53  TLLAALTMQKRFDSIYSIISQV---EENGMNPDSIFFNAVINAFSESGNMESAMETFWKM 109

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              G+     TYN L+KGY    + +++ +LL  M+ +  ++P++ +YN+L+  +     
Sbjct: 110 QENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKR 169

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A     +M A GI P  ++Y T+  A+A       A  V  EM ++  V+ +     
Sbjct: 170 ITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEM-QNNGVQPNERTCG 228

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPG--EALLLWKEI 454
           +++ GYC+ G + EA R   RMKE G +PN+  + SL  G +++  + G  E L L +E 
Sbjct: 229 IIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEF 288

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
                               +KPD      + +    A F  K  EI   M + GI P+ 
Sbjct: 289 G-------------------VKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDA 329

Query: 515 TKY 517
             Y
Sbjct: 330 HAY 332


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 184/394 (46%), Gaps = 57/394 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   Y +++N     G  ++ L+LF++    G KPD++ YN ++K LC +    H L  
Sbjct: 323 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQ- 381

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V+  + E G    + T+  ++      G++  A  ++                       
Sbjct: 382 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVM----------------------- 418

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                    +D + +  LP+                     + TL+ GY    ++   ++
Sbjct: 419 ---------NDAIMKGYLPDVFT------------------FNTLIDGYCKRLKLDSALQ 451

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++    R  +    PD +TY +V++ L KAG ++   +   EM   G   N ITYNIL++
Sbjct: 452 LV---ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIE 508

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C+  ++++A +++ +M+ +  + PD VS+N LI GF    D  GA   F ++  +G +
Sbjct: 509 NFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 567

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            T  ++ TL+ AF+      +A K+FDEML     + D   + +L++G C+   V+ A  
Sbjct: 568 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH-RADSYTYRVLIDGSCKTANVDRAYM 626

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            +  M + GF P+++T+G + N +++  +  +A+
Sbjct: 627 HLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAV 660



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 202/444 (45%), Gaps = 44/444 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +   P++ A++ V+  L   GD   +E+  L   V++R               +   
Sbjct: 177 MLHTHVFPNLAAFNKVLHALCKRGD--VLEAGLLLGKVIQRGMSI-----------NLFT 223

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN  +      G+  + ++L D M  + A PDV+TYN +I+   + S     +  L R++
Sbjct: 224 YNIWIRGLCEAGRLPEAVRLVDGMRAY-AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 282

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG----RRDVCKIIRELDLEDYSS 175
             G      T+ +++  Y     + E  E +  A+ +G    +   C +I  L  E    
Sbjct: 283 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAE---- 338

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              GD +   E+F +     I P             +  +Y +L+KG   +G +   +  
Sbjct: 339 ---GDVERALELFNEAQAKGIKP-------------DIVVYNSLVKGLCLQGLI---LHA 379

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M    +   HPD  TY  V++ L K G++  A  V+ +    G   +  T+N L+ G
Sbjct: 380 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 439

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++L++D A +L+  M +   I PD ++YN +++G             F EM  +G  P
Sbjct: 440 YCKRLKLDSALQLVERMWEYG-IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHP 498

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y  L++ F  S++ + A+KV  +M ++  +  D V++N L+ G+CR G +E A  +
Sbjct: 499 NPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDLEGAYLL 557

Query: 416 IERMKENGFYPNVATYGSLANGIS 439
            ++++E G+     T+ +L    S
Sbjct: 558 FQKLEEKGYSATADTFNTLIGAFS 581



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 121/518 (23%), Positives = 212/518 (40%), Gaps = 87/518 (16%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A + A A  G+ +  +  F++M  F   P    YN ++     A+       V  R+L
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
             G++  + T    + ++       IA  +++A+   G    C ++  L    Y+    G
Sbjct: 113 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL----YA---HG 165

Query: 180 DDDDDDEVFEKLLPNSINPSS-----------------EPPLL-----PKTFAPNSRIYT 217
              D  ++F+++L   + P+                  E  LL      +  + N   Y 
Sbjct: 166 HTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN 225

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
             ++G    GR+ + VR++  MR      + PD VTY T++  L K      A   L  M
Sbjct: 226 IWIRGLCEAGRLPEAVRLVDGMRAY----AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRM 281

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              G   +  TYN ++ GYC+   + +A ELL++      + PD V+Y  LI+G     D
Sbjct: 282 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV-PDQVTYCSLINGLCAEGD 340

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKV--- 391
              AL  FNE +A+GI P  + Y +L+K   L      A +V +EM  +   P ++    
Sbjct: 341 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNI 400

Query: 392 ----------------------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
                                       D+  +N L++GYC+   ++ A +++ERM E G
Sbjct: 401 VINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG 460

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKKEGVNADSDLPPPLKPDEELL 482
             P+  TY S+ NG+  A K  E    ++E I + C             P P+       
Sbjct: 461 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH------------PNPIT-----Y 503

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + L +   R+    +A +++  M + G+ P+   +  +
Sbjct: 504 NILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 541



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L P T  P   +Y   ++ Y   GR+ D V    A  R +  A  P    Y  ++ ALV 
Sbjct: 44  LSPATIHP---LYVASIRAYARAGRLRDAV---DAFERMDLFACPPAAPAYNAIMDALVD 97

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A   D+A +V   M   GV  +  T+ I L+ +C   +   A  LLR +          V
Sbjct: 98  AAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG-----AV 152

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  ++ G      +  A   F++M    + P   ++  ++ A         A  +  ++
Sbjct: 153 AYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 212

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++   + +++  +N+ + G C  G + EA R+++ M+     P+V TY +L  G+     
Sbjct: 213 IQRG-MSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSM 270

Query: 444 PGEAL 448
           P EA+
Sbjct: 271 PQEAM 275



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 67/319 (21%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GYLP V  ++T++        DG  + +KL D  ++ V +  +  I     PDT  YN+V
Sbjct: 425 GYLPDVFTFNTLI--------DGYCKRLKL-DSALQLVERMWEYGIA----PDTITYNSV 471

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           LN     GK  +  + F +M   G  P+ +TYN++I+   R+++      V+ ++ + G+
Sbjct: 472 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 531

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                +F +L+  +   GDLE A  + Q + E                            
Sbjct: 532 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEE---------------------------- 563

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                                 K ++  +  + TL+  +  +  +    ++   M  +  
Sbjct: 564 ----------------------KGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH 601

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
            A   D  TY  ++    K  ++DRA   L EM + G   +  T+  ++       ++ +
Sbjct: 602 RA---DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQ 658

Query: 305 AKELLREMADDAKIEPDVV 323
           A  ++  M     + P+VV
Sbjct: 659 AVGIIHIMVKIGVV-PEVV 676


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 207/466 (44%), Gaps = 35/466 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P   + N +LN     G P     ++ QM   G  PD  T  +M K   R  R    V 
Sbjct: 180 RPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVE 239

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            +E +  MG+ + +  + +++  Y G G  E A  I+++++        +   L ++ Y 
Sbjct: 240 FVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYC 299

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +  G  ++ + V +++                    +   Y  ++ GY   GR+ D  R
Sbjct: 300 KD--GRMEEAERVVKEMKETG------------DIVVDEVAYGMMINGYCQRGRMDDATR 345

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   MR   D   H +   Y T+++ L K G M+  ++VL EM  +G+  ++ +YN L+ 
Sbjct: 346 VRNEMR---DAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++  + KA E+ R M  +  +    ++YN L+ GF  +     AL  +  M  RG+A
Sbjct: 403 GYCREGSMRKAFEMCRMMVRNG-LAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVA 461

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P +IS +TL+     + + + A  ++ E L     K +++ +N ++ G C++G + EA+ 
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAK-NVITFNTVINGLCKIGRMAEAEE 520

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +++RMKE    P+  TY +L +G     + G A  L  +++                   
Sbjct: 521 LLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHL----------------G 564

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             P  E+ ++       A  + K  +I + M   G+ PN   Y  +
Sbjct: 565 FAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGAL 610



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 185/419 (44%), Gaps = 26/419 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +  AY+AV++    +G  +   ++ + +   G  P+V+TY +++K   +  R      V+
Sbjct: 252 NLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVV 311

Query: 117 ERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV------------CK 163
           + + E G I +    +  ++  Y   G ++ A  +   MR+    V            CK
Sbjct: 312 KEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK 371

Query: 164 IIRELDLEDYSSENEGDDDDDDEV-FEKLLPNSINPSSEPP-------LLPKTFAPNSRI 215
           + R  +++    E E      D+  +  L+       S          ++    A  +  
Sbjct: 372 LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLT 431

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+KG+ +   + D +R+   M ++      P+ ++ +T++  L KAG  ++A  +  
Sbjct: 432 YNTLLKGFCSLHAIDDALRLWFLMLKR---GVAPNEISCSTLLDGLFKAGKTEQALNLWK 488

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           E    G+  N IT+N ++ G C+  ++ +A+ELL  M  + +  PD ++Y  L DG+  +
Sbjct: 489 ETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRM-KELRCPPDSLTYRTLFDGYCKL 547

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A    N+M   G AP+   + + +    ++ Q    N +  EM     +  ++V 
Sbjct: 548 GQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEM-SARGLSPNLVT 606

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +  L+ G+C+ G + EA  +   M  NG  PNV    +L +      K  EA L+ +++
Sbjct: 607 YGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL 665



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 166/351 (47%), Gaps = 32/351 (9%)

Query: 190 KLLPNSINPSSEPPLLP------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
           + L +S+ P +EP L P      + F  ++  +  L++ + + G++S  + +   M +  
Sbjct: 120 RALLSSLPPHAEP-LFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKV- 177

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P   +   +++ LV++G    A  V  +M   GV  +  T  I+ K YC+  ++ 
Sbjct: 178 --GCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVA 235

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A E + EM +   +E ++V+Y+ ++D +  +  +  A      ++ +G++P  ++YT L
Sbjct: 236 QAVEFVEEM-EGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLL 294

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +K +    + + A +V  EM     + VD VA+ M++ GYC+ G +++A R+   M++ G
Sbjct: 295 VKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAG 354

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
            + N+  Y ++ NG+    K G    + K ++E  +V              ++PD+   +
Sbjct: 355 IHVNLFVYNTMINGLC---KLGRMEEVQKVLQEMEDVG-------------MRPDKYSYN 398

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
            L D   R    RKA E+   M  +G+      Y  +      + F S HA
Sbjct: 399 TLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLL-----KGFCSLHA 444



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 189/460 (41%), Gaps = 72/460 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVVK---RVRK 44
           ML+ G  P+  + ST++  L  +G               G  ++V  F+ V+    ++ +
Sbjct: 455 MLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGR 514

Query: 45  FSDPDIVSD------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            ++ + + D        PD+  Y  + +    LG+      L ++M   G  P V  +N 
Sbjct: 515 MAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNS 574

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG 157
            I     A + H +  +   +   G++  + T+ +L+A +   G+L E      + +  G
Sbjct: 575 FITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNG 634

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                 I   L    Y    EG  D+ + V +KL+   +              P   I T
Sbjct: 635 MNPNVFICSALMSCFYK---EGKVDEANLVLQKLVNIDM-------------IPGCSIST 678

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
             +        V DT+          D   H  +V +  ++  L K+G +  A+ +   +
Sbjct: 679 IEIDKI---SHVVDTI---------ADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESL 726

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
                  +  TY+ L+ G      ID+A  L R++   A + P++++YN LI G      
Sbjct: 727 RNKRFLPDNFTYSSLIHGCAASGSIDEAFSL-RDVMLSAGLTPNIITYNSLIYGLCKSGK 785

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
            + A+  FN+++++GI+P  I+Y TL+  +    +   A K+  +M+             
Sbjct: 786 LSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVE------------ 833

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
              EGY     +EEA +++++M EN   PN  TY +L +G
Sbjct: 834 ---EGY-----MEEAIKLLDQMIENNVDPNYITYCTLIHG 865



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 47/228 (20%)

Query: 13  WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG 72
           W+ ++  L  SG     +S  LF+ +  R ++F          PD   Y+++++ CA  G
Sbjct: 703 WNVIIFGLCKSGRIADAKS--LFESL--RNKRF---------LPDNFTYSSLIHGCAASG 749

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQ 132
              +   L D M   G  P+++TYN +I    ++ +    V +  ++   GI+    T+ 
Sbjct: 750 SIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYN 809

Query: 133 SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL 192
           +L+  Y   G    A  + Q M E                     EG  ++  ++ ++++
Sbjct: 810 TLIDEYCKEGKTTEAFKLKQKMVE---------------------EGYMEEAIKLLDQMI 848

Query: 193 PNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            N+++             PN   Y TL+ GY+  G + +  ++   M 
Sbjct: 849 ENNVD-------------PNYITYCTLIHGYIKSGNMEEISKLYDEMH 883


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 184/381 (48%), Gaps = 28/381 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PD   + ++LN   +  + +  + LFDQ+   G KP+V+TY  +I+ LC      H   
Sbjct: 150 EPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNH--- 206

Query: 114 FVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             +E   +MG       + T+ +LV      G    A  +++ M + RR    +I    L
Sbjct: 207 -AVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMK-RRIEPNVITFTAL 264

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            D +    G   +  E++  ++  S+         P  F   S I    M G ++E R  
Sbjct: 265 ID-AFVKVGKLMEAKELYNVMIQMSV--------YPDVFTYGSLINGLCMYGLLDEAR-- 313

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              +M   M R   N  +P+ V YTT++    K+  ++   ++  EM++ GV AN ITY 
Sbjct: 314 ---QMFYLMER---NGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           +L++GYC   + D A+E+  +M+   +  PD+ +YN+L+DG         AL  F  MR 
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSR-RAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRK 426

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           R +    ++YT +++      + + A  +F  +     +K +++ +  ++ G+CR GL+ 
Sbjct: 427 REMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLF-SKGMKPNVITYTTMISGFCRRGLIH 485

Query: 411 EAKRIIERMKENGFYPNVATY 431
           EA  + ++MKE+GF PN + Y
Sbjct: 486 EADSLFKKMKEDGFLPNESVY 506



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 202/466 (43%), Gaps = 42/466 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +L+  A + +    + LF+QM   G  P + T N+++     +S+       
Sbjct: 81  PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYS 174
           L +++++G    + TF SL+  Y  +  +E A  +  Q +  G +    ++    L    
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP--NVVTYTTLIRCL 198

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N    +   E+F ++  N   P             N   Y  L+ G    GR  D   
Sbjct: 199 CKNR-HLNHAVELFNQMGTNGSRP-------------NVVTYNALVTGLCEIGRWGDAAW 244

Query: 235 MLGAM--RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +L  M  RR E     P+ +T+T ++ A VK G +  A+++   M ++ V  +  TY  L
Sbjct: 245 LLRDMMKRRIE-----PNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSL 299

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C    +D+A+++   M  +    P+ V Y  LI GF         +  F EM  +G
Sbjct: 300 INGLCMYGLLDEARQMFYLMERNG-CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKG 358

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +    I+YT L++ + L  +P +A +VF++M    R   DI  +N+L++G C  G VE+A
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDVAQEVFNQM-SSRRAPPDIRTYNVLLDGLCCNGKVEKA 417

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             I E M++     N+ TY  +  G+    K  +A  L+      C +  +G        
Sbjct: 418 LMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLF------CSLFSKG-------- 463

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
             +KP+      +     R     +A  +   M+E G  PN++ YK
Sbjct: 464 --MKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 184/394 (46%), Gaps = 57/394 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   Y +++N     G  ++ L+LF++    G KPD++ YN ++K LC +    H L  
Sbjct: 324 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQ- 382

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V+  + E G    + T+  ++      G++  A  ++                       
Sbjct: 383 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVM----------------------- 419

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                    +D + +  LP+                     + TL+ GY    ++   ++
Sbjct: 420 ---------NDAIMKGYLPDVFT------------------FNTLIDGYCKRLKLDSALQ 452

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++    R  +    PD +TY +V++ L KAG ++   +   EM   G   N ITYNIL++
Sbjct: 453 LV---ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIE 509

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C+  ++++A +++ +M+ +  + PD VS+N LI GF    D  GA   F ++  +G +
Sbjct: 510 NFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 568

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            T  ++ TL+ AF+      +A K+FDEML     + D   + +L++G C+   V+ A  
Sbjct: 569 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH-RADSYTYRVLIDGSCKTANVDRAYM 627

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            +  M + GF P+++T+G + N +++  +  +A+
Sbjct: 628 HLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAV 661



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 202/444 (45%), Gaps = 44/444 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +   P++ A++ V+  L   GD   +E+  L   V++R               +   
Sbjct: 178 MLHTHVFPNLAAFNKVLHALCKRGD--VLEAGLLLGKVIQRGMSI-----------NLFT 224

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN  +      G+  + ++L D M  + A PDV+TYN +I+   + S     +  L R++
Sbjct: 225 YNIWIRGLCEAGRLPEAVRLVDGMRAY-AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 283

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG----RRDVCKIIRELDLEDYSS 175
             G      T+ +++  Y     + E  E +  A+ +G    +   C +I  L  E    
Sbjct: 284 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAE---- 339

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              GD +   E+F +     I P             +  +Y +L+KG   +G +   +  
Sbjct: 340 ---GDVERALELFNEAQAKGIKP-------------DIVVYNSLVKGLCLQGLI---LHA 380

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M    +   HPD  TY  V++ L K G++  A  V+ +    G   +  T+N L+ G
Sbjct: 381 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 440

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++L++D A +L+  M +   I PD ++YN +++G             F EM  +G  P
Sbjct: 441 YCKRLKLDSALQLVERMWEYG-IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHP 499

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y  L++ F  S++ + A+KV  +M ++  +  D V++N L+ G+CR G +E A  +
Sbjct: 500 NPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDLEGAYLL 558

Query: 416 IERMKENGFYPNVATYGSLANGIS 439
            ++++E G+     T+ +L    S
Sbjct: 559 FQKLEEKGYSATADTFNTLIGAFS 582



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 121/518 (23%), Positives = 212/518 (40%), Gaps = 87/518 (16%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A + A A  G+ +  +  F++M  F   P    YN ++     A+       V  R+L
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
             G++  + T    + ++       IA  +++A+   G    C ++  L    Y+    G
Sbjct: 114 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL----YA---HG 166

Query: 180 DDDDDDEVFEKLLPNSINPSS-----------------EPPLL-----PKTFAPNSRIYT 217
              D  ++F+++L   + P+                  E  LL      +  + N   Y 
Sbjct: 167 HTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN 226

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
             ++G    GR+ + VR++  MR      + PD VTY T++  L K      A   L  M
Sbjct: 227 IWIRGLCEAGRLPEAVRLVDGMRAY----AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRM 282

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              G   +  TYN ++ GYC+   + +A ELL++      + PD V+Y  LI+G     D
Sbjct: 283 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV-PDQVTYCSLINGLCAEGD 341

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKV--- 391
              AL  FNE +A+GI P  + Y +L+K   L      A +V +EM  +   P ++    
Sbjct: 342 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNI 401

Query: 392 ----------------------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
                                       D+  +N L++GYC+   ++ A +++ERM E G
Sbjct: 402 VINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG 461

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKKEGVNADSDLPPPLKPDEELL 482
             P+  TY S+ NG+  A K  E    ++E I + C             P P+       
Sbjct: 462 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH------------PNPIT-----Y 504

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + L +   R+    +A +++  M + G+ P+   +  +
Sbjct: 505 NILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 542



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L P T  P   +Y   ++ Y   GR+ D V    A  R +  A  P    Y  ++ ALV 
Sbjct: 45  LSPATIHP---LYVASIRAYARAGRLRDAV---DAFERMDLFACPPAAPAYNAIMDALVD 98

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A   D+A +V   M   GV  +  T+ I L+ +C   +   A  LLR +          V
Sbjct: 99  AAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG-----AV 153

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  ++ G      +  A   F++M    + P   ++  ++ A         A  +  ++
Sbjct: 154 AYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 213

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++   + +++  +N+ + G C  G + EA R+++ M+     P+V TY +L  G+     
Sbjct: 214 IQRG-MSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSM 271

Query: 444 PGEAL 448
           P EA+
Sbjct: 272 PQEAM 276



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 67/319 (21%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GYLP V  ++T++        DG  + +KL D  ++ V +  +  I     PDT  YN+V
Sbjct: 426 GYLPDVFTFNTLI--------DGYCKRLKL-DSALQLVERMWEYGIA----PDTITYNSV 472

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           LN     GK  +  + F +M   G  P+ +TYN++I+   R+++      V+ ++ + G+
Sbjct: 473 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 532

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                +F +L+  +   GDLE A  + Q + E                            
Sbjct: 533 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEE---------------------------- 564

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                                 K ++  +  + TL+  +  +  +    ++   M  +  
Sbjct: 565 ----------------------KGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH 602

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
            A   D  TY  ++    K  ++DRA   L EM + G   +  T+  ++       ++ +
Sbjct: 603 RA---DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQ 659

Query: 305 AKELLREMADDAKIEPDVV 323
           A  ++  M     + P+VV
Sbjct: 660 AVGIIHIMVKIGVV-PEVV 677


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 223/523 (42%), Gaps = 93/523 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +LR G  P++  +++V++ L   G+    ES+      + +V K       S  KPDT  
Sbjct: 219 ILREGLQPNLLIYNSVINALCKDGNVRDAESI------INKVFK-------SGMKPDTFT 265

Query: 61  YNA-VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLER 118
           Y + +L  C N      F ++F++M E G +P+  TY+ +I  LC        L F+ E 
Sbjct: 266 YTSMILGYCRNRDLDSAF-EIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISE- 323

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +   G+   + TF + + A    G +E A  I   M++                      
Sbjct: 324 MTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKK---------------------- 361

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM-LG 237
                                       K   PN   YT+L+ G     RVS   RM +G
Sbjct: 362 ----------------------------KGCKPNVYTYTSLISGQ----RVS---RMAIG 386

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
              R   +   P+ VTY  +++ L++   +D A  V   M + G   N  +YN L++GYC
Sbjct: 387 LFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYC 446

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
                +KA  +L  M    +  P +V+YNI+I G+    D+  A+     M+A G  P +
Sbjct: 447 TIGDTEKAMSMLTNMLK-GRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDE 505

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            SYT L+  F   S+ +LA+ +F+EM+ D  +  + V +  L+ GYC+   ++ A R++E
Sbjct: 506 WSYTELISGFCKISKMELASGMFNEMM-DRGLCPNEVTYTALISGYCKDEKLDCAARMLE 564

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           RMK +G  PNV TY  L +G++           +   +E C+V  E           + P
Sbjct: 565 RMKRSGCRPNVQTYNVLIHGLTKQNN-------FSGAEELCKVMLE---------EKISP 608

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D      + +          ALE+   M +HG  PN   Y  +
Sbjct: 609 DVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSL 651



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 191/431 (44%), Gaps = 44/431 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+   +ST+++ L  SG        +  D + +  R    P +          + A 
Sbjct: 293 GCEPNAATYSTLINGLCNSGRVN-----EALDFISEMTRHGVLPTV--------HTFTAP 339

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           + A  ++G+ +   ++F  M + G KP+V TY  +I    R SR  + +F   R+   G+
Sbjct: 340 IVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS-GQRVSRMAIGLF--HRMSRDGV 396

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD-- 182
                T+ +L+   V   ++EI   ++     G+           L + SS NE      
Sbjct: 397 VPNTVTYNALMN--VLMENMEIDSALIVFNMMGKHGC--------LPNTSSYNELIRGYC 446

Query: 183 --DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
              D E    +L N +     P L+          Y  ++KGY + G     +R+L  M+
Sbjct: 447 TIGDTEKAMSMLTNMLKGRPTPTLV---------TYNIIIKGYCDSGDTDVAIRVLELMK 497

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               N   PD  +YT ++S   K   M+ A  +  EM   G+  N +TY  L+ GYC+  
Sbjct: 498 A---NGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDE 554

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D A  +L  M       P+V +YN+LI G    ++ +GA      M    I+P  ++Y
Sbjct: 555 KLDCAARMLERMKRSG-CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTY 613

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           +T++     +    LA ++F++M++   +  ++  ++ L++   + G VEEA+ +   +K
Sbjct: 614 STVINGLCNNGAIPLALEMFNKMVKHGCLP-NLHTYSSLIQALGQEGRVEEAEEMFSELK 672

Query: 421 ENGFYPNVATY 431
           + G  P+  TY
Sbjct: 673 KQGLIPDEVTY 683



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/486 (19%), Positives = 190/486 (39%), Gaps = 72/486 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDG-------------PVESVKLFDVVVKRVRKFSD 47
           M + G LP+  +++ ++      GD               P  ++  +++++K      D
Sbjct: 426 MGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGD 485

Query: 48  PDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            D+          +  +PD  +Y  +++    + K +    +F++M + G  P+ +TY  
Sbjct: 486 TDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTA 545

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I    +  +      +LER+   G    + T+  L+       +   AE + + M E +
Sbjct: 546 LISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEK 605

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNS 213
                     D+  YS+   G  ++       E+F K++ +                PN 
Sbjct: 606 ISP-------DVVTYSTVINGLCNNGAIPLALEMFNKMVKHGC-------------LPNL 645

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y++L++    EGRV +   M   +++Q      PD VTY  ++   V +G +DRA   
Sbjct: 646 HTYSSLIQALGQEGRVEEAEEMFSELKKQ---GLIPDEVTYVKMIEVCVMSGKVDRAFDF 702

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA----DDAKIEPDVVS----- 324
           L EM   G      TY++L+KG   ++   K   L    +    DD  I  DV+S     
Sbjct: 703 LGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSK 762

Query: 325 ------------YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                       Y+ L+           A   +  M ++   P + +Y   + +   + +
Sbjct: 763 LAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALK 822

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
             LA  VF  M  D R ++ +  +  L+   C++   +EA+ + E+M       +   + 
Sbjct: 823 VDLAMDVFKHM-SDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWT 881

Query: 433 SLANGI 438
            L NG+
Sbjct: 882 ILINGL 887



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           + +Y  L+     ++ ++  +  ++++   G+ P  + Y +++ A       + A  + +
Sbjct: 193 LFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIIN 252

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           ++ +   +K D   +  ++ GYCR   ++ A  I  RM E G  PN ATY +L NG+  +
Sbjct: 253 KVFKSG-MKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNS 311

Query: 442 RKPGEALLLWKEI 454
            +  EAL    E+
Sbjct: 312 GRVNEALDFISEM 324



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 154/382 (40%), Gaps = 44/382 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG  P+V+ ++ ++  L    +    E  +L  V+++   K S         PD   
Sbjct: 566 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAE--ELCKVMLEE--KIS---------PDVVT 612

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ V+N   N G     L++F++M + G  P++ TY+ +I+   +  R      +   + 
Sbjct: 613 YSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELK 672

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK-IIRELDLEDYSSENEG 179
           + G+     T+  ++   V  G ++ A   +  M       C+  ++  D+     +NE 
Sbjct: 673 KQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAG---CQPTLQTYDVLIKGLQNE- 728

Query: 180 DDDDDDEVFEKL--LPNSINPSS--------------EPPLLPKTFAPNSRIYTTLMKGY 223
                  V+ KL  LPN+ + S+                 L    F  + ++Y  L+   
Sbjct: 729 ------MVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRL 782

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
              GR  +   +  +M  Q   +  P+  TY   + +L++A  +D A  V   M+     
Sbjct: 783 SRSGRWFEANNLYRSMVSQ---SQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCE 839

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            +   Y  L+   CQ  +  +A+ +  +M   A +  D + + ILI+G +        + 
Sbjct: 840 LHLTGYKELICTLCQLHRRKEARFVFEKMLSRA-LNADEIVWTILINGLLGAGYKDLCME 898

Query: 344 FFNEMRARGIAPTKISYTTLMK 365
           F + M      P+  + T L +
Sbjct: 899 FLHIMETNRRNPSSHARTILAR 920


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 199/481 (41%), Gaps = 74/481 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L + A   +      L +QM  FG  PDV T N++I      +R      V
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSV 124

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G+     TF +L+                       R +C             
Sbjct: 125 LAKILKLGLQPDTATFTTLI-----------------------RGLCV------------ 149

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   D   +F+K++              + F PN   Y TL+ G    G  +  +R+
Sbjct: 150 --EGKIGDALHLFDKMIG-------------EGFQPNVVTYGTLINGLCKVGNTNAAIRL 194

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R  E     PD V YT+++ +L K   +  A  + ++M   G+  +  TY  L+  
Sbjct: 195 L---RSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHS 251

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL +M + +KI PDVV ++ ++D          A    + M  RG+ P
Sbjct: 252 LCNLCEWKHVTTLLNQMIN-SKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEP 310

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y  LM    L S+   A KVFD M+ +     +++++N L+ GYC++  +++A  +
Sbjct: 311 NVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAP-NVISYNTLINGYCKIQRMDKATYL 369

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV--------------K 461
            E M +    PN  TY +L +G+    +  +A+ L+ E+    ++              K
Sbjct: 370 FEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 429

Query: 462 KEGVNADSDLPPPLK-----PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           K  ++    L   ++     PD ++   + D   RA     A +I + +   G+ PN   
Sbjct: 430 KSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRT 489

Query: 517 Y 517
           Y
Sbjct: 490 Y 490



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/459 (20%), Positives = 195/459 (42%), Gaps = 37/459 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G  P    ++T++  L   G  G  +++ LFD ++               +P+   
Sbjct: 128 ILKLGLQPDTATFTTLIRGLCVEGKIG--DALHLFDKMIGE-----------GFQPNVVT 174

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +PDV+ Y  +I    +  +      +  +++
Sbjct: 175 YGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMV 234

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELDLEDYSSENE 178
             GI+  + T+ SL+ +     + +   T++  M   +   DV      +D    +   E
Sbjct: 235 GQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD----ALCKE 290

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   +  +V + ++   + P             N   Y  LM G+  +  + + V++   
Sbjct: 291 GKITEAHDVVDMMIIRGVEP-------------NVVTYNALMDGHCLQSEMDEAVKVFDT 337

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M     N   P+ ++Y T+++   K   MD+A  +  EM +  +  N +TYN L+ G C 
Sbjct: 338 MVH---NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCH 394

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++  A  L  EM    +I PD+ +Y IL+D          A+     +    + P   
Sbjct: 395 VGRLQDAIALFHEMVAHGQI-PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQ 453

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            YT ++     + + + A  +F   L    ++ ++  + +++ G CR GL++EA ++   
Sbjct: 454 IYTIVIDGMCRAGELEAARDIFSN-LSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFME 512

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           M  NG  P+  TY ++  G+   ++   A+ L +E+  R
Sbjct: 513 MDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLAR 551



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 174/426 (40%), Gaps = 87/426 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P+V  + T+++ L   G+          +  ++ +R         + +PD   
Sbjct: 163 MIGEGFQPNVVTYGTLINGLCKVGNT---------NAAIRLLRSMEQ----GNCQPDVVV 209

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y +++++     +  +   LF +M   G  PD+ TY  +I  LC     KH+   +L ++
Sbjct: 210 YTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT-LLNQM 268

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR--ELDLEDYSSEN 177
           +   I   +  F ++V A    G +  A  +V  M         IIR  E ++  Y++  
Sbjct: 269 INSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMM---------IIRGVEPNVVTYNALM 319

Query: 178 EG-----DDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFA 210
           +G     + D+  +VF+ ++ N   P+                          +  K   
Sbjct: 320 DGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI 379

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAM------------------------------- 239
           PN+  Y TLM G  + GR+ D + +   M                               
Sbjct: 380 PNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMAL 439

Query: 240 -RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            +  E +   PD   YT V+  + +AG ++ AR + + ++  G+  N  TY I++ G C+
Sbjct: 440 LKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCR 499

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           +  +D+A +L  EM D     PD  +YN +  G +   ++  A+    EM ARG +   +
Sbjct: 500 RGLLDEANKLFMEM-DGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS-ADV 557

Query: 359 SYTTLM 364
           S TTL+
Sbjct: 558 STTTLL 563



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 116/274 (42%), Gaps = 21/274 (7%)

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           ++D A      M  +  P + + +N LL    +  Q      L  +M D   I PDV + 
Sbjct: 47  TLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQM-DSFGIPPDVYTL 105

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           NILI+ F  ++    A +   ++   G+ P   ++TTL++   +  +   A  +FD+M+ 
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 165

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           +   + ++V +  L+ G C++G    A R++  M++    P+V  Y S+ + +   R+  
Sbjct: 166 E-GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 224

Query: 446 EALLLWKEIKER-------------------CEVKKEGVNADSDLPPPLKPDEELLDALA 486
           EA  L+ ++  +                   CE K      +  +   + PD  +   + 
Sbjct: 225 EAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVV 284

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D   +     +A ++V  M   G+ PN   Y  +
Sbjct: 285 DALCKEGKITEAHDVVDMMIIRGVEPNVVTYNAL 318



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 38/332 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ S  +P V  +STVV  L   G     +  +  DVV        D  I+   +P+   
Sbjct: 268 MINSKIMPDVVIFSTVVDALCKEG-----KITEAHDVV--------DMMIIRGVEPNVVT 314

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA+++      +  + +++FD M   G  P+V++YN +I    +  R     ++ E + 
Sbjct: 315 YNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMC 374

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN--- 177
           +  +     T+ +L+      G L+ A  +   M      +  +     L DY  +    
Sbjct: 375 QKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMV-AHGQIPDLATYRILLDYLCKKSHL 433

Query: 178 ----------EGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTL 219
                     EG + D D     ++ + +  + E          L  K   PN R YT +
Sbjct: 434 DEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIM 493

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G    G + +  ++   M   + N   PD  TY T+   L++     RA Q+L EM  
Sbjct: 494 INGLCRRGLLDEANKLFMEM---DGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLA 550

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
            G  A+  T  +L++  C        K++L E
Sbjct: 551 RGFSADVSTTTLLVEMLCDDKLDQSVKQILSE 582


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 196/465 (42%), Gaps = 71/465 (15%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           + +P    +   L + A   +    + L +QM  F    +V + N++I    R +     
Sbjct: 88  NPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFS 147

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           V VL ++ ++GI     TF +L+                         +C          
Sbjct: 148 VSVLGKMFKLGIHPDAITFNALING-----------------------LC---------- 174

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               NEG   +  E+F +             ++ +   PN   YTT++ G    G  S  
Sbjct: 175 ----NEGKIKEAVELFNE-------------MVKRGHEPNVISYTTVINGLCKTGNTSMA 217

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V +    ++ E N   P+ VTY+T++ +L K   ++ A + L+EM   G+P N  TYN +
Sbjct: 218 VDVF---KKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSI 274

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+C   Q+++A  L +EM     + P+ V++ IL+DG       + A   F  M  +G
Sbjct: 275 VHGFCNLGQLNEATRLFKEMV-GRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKG 333

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P   +Y  LM  + L      A KVF+ M+R         ++N+L+ GYC+   ++EA
Sbjct: 334 VEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKG-CAPGAHSYNILINGYCKSRRMDEA 392

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           K ++  M      P+  TY +L  G+    +P EAL L+KE+   C              
Sbjct: 393 KSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM---CSYGPH--------- 440

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           P L     LLD       +     +AL+++  M+E  + PN   Y
Sbjct: 441 PNLVTYVILLDGFC----KHGHLDEALKLLKSMKEKKLEPNIVHY 481



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 208/463 (44%), Gaps = 73/463 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +NA++N   N GK K+ ++LF++M + G +P+V++Y  +I    +     + V V
Sbjct: 161 PDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDV 220

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            +++ + G    + T+ +++ +                       +CK            
Sbjct: 221 FKKMEQNGCKPNVVTYSTIIDS-----------------------LCK------------ 245

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                        ++L+ +++   SE  ++ +   PN   Y +++ G+ N G++++  R+
Sbjct: 246 -------------DRLVNDAMEFLSE--MVERGIPPNVFTYNSIVHGFCNLGQLNEATRL 290

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  ++     P+ VT+T +V  L K G +  AR V   MT  GV  +  TYN L+ G
Sbjct: 291 FKEMVGRD---VMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDG 347

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC Q  +++AK++   M       P   SYNILI+G+        A +   EM  + + P
Sbjct: 348 YCLQRLMNEAKKVFEIMIRKG-CAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNP 406

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR-DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
             ++Y+TLM+      +PK A  +F EM    P    ++V + +L++G+C+ G ++EA +
Sbjct: 407 DTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPH--PNLVTYVILLDGFCKHGHLDEALK 464

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +++ MKE    PN+  Y  L  G+ +A K   A  L+ ++                    
Sbjct: 465 LLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKL----------------FGDG 508

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            +PD      +    ++     +A ++   ME+ G  PN   Y
Sbjct: 509 TRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 551



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 210/455 (46%), Gaps = 35/455 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P    ++ +++ L   G     E+V+LF+ +VKR             +P+  +
Sbjct: 154 MFKLGIHPDAITFNALINGLCNEGKIK--EAVELFNEMVKR-----------GHEPNVIS 200

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y  V+N     G     + +F +M + G KP+V+TY+ +I  LC        + F L  +
Sbjct: 201 YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEF-LSEM 259

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +E GI   + T+ S+V  +   G L  A  + + M  GR  +   +    L D   + EG
Sbjct: 260 VERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMV-GRDVMPNTVTFTILVDGLCK-EG 317

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              +   VFE +    +              P+   Y  LM GY  +  +++  ++   M
Sbjct: 318 MVSEARLVFETMTEKGV-------------EPDISTYNALMDGYCLQRLMNEAKKVFEIM 364

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R+      P   +Y  +++   K+  MD A+ +LAEM    +  + +TY+ L++G CQ 
Sbjct: 365 IRK---GCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQL 421

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +  +A  L +EM       P++V+Y IL+DGF        AL     M+ + + P  + 
Sbjct: 422 GRPKEALNLFKEMCSYGP-HPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVH 480

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT L++   ++ + ++A ++F ++  D   + DI  + ++++G  + GL +EA  +  +M
Sbjct: 481 YTILIEGMFIAGKLEVAKELFSKLFGDG-TRPDIRTYTVMIKGLLKEGLSDEAYDLFRKM 539

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++GF PN  +Y  +  G    +    A+ L  E+
Sbjct: 540 EDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 574



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/425 (20%), Positives = 185/425 (43%), Gaps = 59/425 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK----- 55
           M++ G+ P+V +++TV++ L  +G+          DV  K  +    P++V+ S      
Sbjct: 189 MVKRGHEPNVISYTTVINGLCKTGNTSMA-----VDVFKKMEQNGCKPNVVTYSTIIDSL 243

Query: 56  ----------------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
                                 P+   YN++++   NLG+  +  +LF +M      P+ 
Sbjct: 244 CKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNT 303

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           +T+ +++    +         V E + E G+   ++T+ +L+  Y     +  A+ + + 
Sbjct: 304 VTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEI 363

Query: 154 M-REGR-----------RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
           M R+G               CK  R  + +   +E      + D V    L   +     
Sbjct: 364 MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGR 423

Query: 202 PPLLPKTFA--------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
           P      F         PN   Y  L+ G+   G + + +++L +M+ ++     P+ V 
Sbjct: 424 PKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKK---LEPNIVH 480

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           YT ++  +  AG ++ A+++ +++   G   +  TY +++KG  ++   D+A +L R+M 
Sbjct: 481 YTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKME 540

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
           DD  + P+  SYN++I GF+   DS+ A+   +EM  +  +   ++ +T      L SQ 
Sbjct: 541 DDGFL-PNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFS---VNLSTFQMLLDLESQD 596

Query: 374 KLANK 378
           ++ ++
Sbjct: 597 EIISQ 601



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 116/272 (42%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  V +   + +  K         +  +M    V  N  + NIL+   C+   +D +  +
Sbjct: 91  PSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSV 150

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L +M     I PD +++N LI+G         A+  FNEM  RG  P  ISYTT++    
Sbjct: 151 LGKMFK-LGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLC 209

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +    +A  VF +M ++   K ++V ++ +++  C+  LV +A   +  M E G  PNV
Sbjct: 210 KTGNTSMAVDVFKKMEQNG-CKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNV 268

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY S+ +G     +  EA  L+KE+  R                 + P+      L D 
Sbjct: 269 FTYNSIVHGFCNLGQLNEATRLFKEMVGR----------------DVMPNTVTFTILVDG 312

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +A  +   M E G+ P+ + Y  +
Sbjct: 313 LCKEGMVSEARLVFETMTEKGVEPDISTYNAL 344


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 214/455 (47%), Gaps = 31/455 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+V +++ ++  L    ++   E+++L  ++         PD   D  PD  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLC--DENRSQEALELLQMM---------PDDGGDCPPDVVS 201

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  V+N     G   K    + +M + G  P+V+TY+ +I    +A      + VL  ++
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S+V  Y   G  + A   ++ M     +   ++    L DY  +N G 
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP-DVVTYNSLMDYLCKN-GR 319

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F+ +    + P                 Y TL++GY  +G + +   +L  M 
Sbjct: 320 CTEARKMFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMHGLLDLMV 366

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N  HP+H  ++ ++ A  K G +D+A  V ++M + G+  + +TY  ++   C+  
Sbjct: 367 R---NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ A     +M D+ ++ P  + YN LI    + D    A     EM  RGI    I +
Sbjct: 424 RVEDAMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFF 482

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++ +     +   + K+FD M+R   VK DI+ ++ L++GYC  G ++EA +++  M 
Sbjct: 483 NSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             G  P+  TY +L NG     +  +AL+L++E++
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREME 576



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 202/457 (44%), Gaps = 70/457 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G LP+V  +S++++ L  A   D      K  +V+   V+        +   P+  
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMD------KAMEVLTSMVK--------NGVMPNCR 270

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++   + G+PK+ +    +MH  G +PDV+TYN ++    +  R      + + +
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+   +TT+ +L+  Y   G L                               E  G
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGAL------------------------------VEMHG 360

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                  + + ++ N I+P             N  +++ L+  Y  +G+V   + +   M
Sbjct: 361 -------LLDLMVRNGIHP-------------NHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R+Q  N   PD VTY TV+  L K+G ++ A +   +M    +    I YN L+   C  
Sbjct: 401 RQQGLN---PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            + DKAKEL+ EM D   I  D + +N +ID          +   F+ M   G+ P  I+
Sbjct: 458 DKWDKAKELILEMLDRG-ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 516

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+TL+  + L+ +   A K+   M+    +K D V +N L+ GYC++  +E+A  +   M
Sbjct: 517 YSTLIDGYCLAGKMDEATKLLASMV-SVGMKPDCVTYNTLINGYCKISRMEDALVLFREM 575

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + +G  P++ TY  +  G+   R+   A  L+  I E
Sbjct: 576 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITE 612



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/466 (21%), Positives = 213/466 (45%), Gaps = 54/466 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++G +P+ + ++++V    +SG   P E++         ++K     +    +PD   
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQ--PKEAIGF-------LKKMHSDGV----EPDVVT 306

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G+  +  ++FD M + G KP++ TY  +++  A       +  +L+ ++
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             GI      F  L+ AY   G ++ A  +   MR+   +        D   Y +     
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP-------DTVTYGTVIGIL 419

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNS 213
              G  +D    FE+++   ++P +                         +L +    ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             + +++  +  EGRV ++ ++   M R       PD +TY+T++     AG MD A ++
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRI---GVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA M  +G+  + +TYN L+ GYC+  +++ A  L REM + + + PD+++YNI++ G  
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESSGVSPDIITYNIILQGLF 595

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVD 392
               +A A   +  +   G      +Y  ++     ++    A ++F  + L D  ++++
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD--LQLE 653

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
              +N+++    ++G  +EAK +   +  NG  P+V TY  +A  +
Sbjct: 654 TRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 130/259 (50%), Gaps = 9/259 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y  L+KG  +E R  + + +L  M   +     PD V+YTTV++   K G +D+A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELL-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                EM   G+  N +TY+ ++   C+   +DKA E+L  M  +  + P+  +YN ++ 
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG-VMPNCRTYNSIVH 277

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+        A+ F  +M + G+ P  ++Y +LM     + +   A K+FD M +   +K
Sbjct: 278 GYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG-LK 336

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +I  +  L++GY   G + E   +++ M  NG +PN   +  L    +   K  +A+L+
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLV 396

Query: 451 WKEIKERCEVKKEGVNADS 469
           + ++++      +G+N D+
Sbjct: 397 FSKMRQ------QGLNPDT 409



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 124/503 (24%), Positives = 206/503 (40%), Gaps = 72/503 (14%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P++ TY ++I  C  A R  L    L  +++ G  +    
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+       D   ++ +   +R   +  C  I  +   +   +   D++   E  E 
Sbjct: 129 FTPLLKGLCA--DKRTSDAMDIVLRRMTQLGC--IPNVFSYNILLKGLCDENRSQEALE- 183

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           LL    +   + P       P+   YTT++ G+  EG   D  +  G      D    P+
Sbjct: 184 LLQMMPDDGGDCP-------PDVVSYTTVINGFFKEG---DLDKAYGTYHEMLDRGILPN 233

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY+++++AL KA +MD+A +VL  M + GV  N  TYN ++ GYC   Q  +A   L+
Sbjct: 234 VVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           +M  D  +EPDVV+YN L+D          A   F+ M  RG+ P   +Y TL++ +A  
Sbjct: 294 KMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 371 SQPKLANKVFDEMLRD---PRVKV-------------------------------DIVAW 396
                 + + D M+R+   P   V                               D V +
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTY 412

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             ++   C+ G VE+A R  E+M +    P    Y SL + + +  K  +A  L  E+ +
Sbjct: 413 GTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 457 R--C-----------EVKKEGVNADSD------LPPPLKPDEELLDALADICVRAAFFRK 497
           R  C              KEG   +S+      +   +KPD      L D    A    +
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           A +++A M   G+ P+   Y  +
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTL 555



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 129/300 (43%), Gaps = 30/300 (10%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R   +   P+  TY  ++ +   AG +D     L  + + G   + I +  LLKG C 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 299 QLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAP 355
             +   A ++ LR M     I P+V SYNIL+ G    + S  AL     M   G    P
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPP 197

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SYTT++  F        A   + EML D  +  ++V ++ ++   C+   +++A  +
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEML-DRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M +NG  PN  TY S+ +G   + +P EA+   K++        +GV          
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS------DGV---------- 300

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------KKIYVEMHS 526
           +PD    ++L D   +     +A ++   M + G+ P  T Y         K   VEMH 
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 360


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 216/473 (45%), Gaps = 33/473 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A   L K    + L  +M   G + D+ T+N++I       +  L + +
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCK 163
           L ++L++G      T  SLV  +     +  A ++V  M E G +            +CK
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRI 215
             R  D  D+  E E      + V    L N +  SS           ++ K   PN   
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y+ L+  ++  G+V +   +   M R    +  PD VTY+++++ L     +D A Q+  
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRM---SIDPDIVTYSSLINGLCLHDRIDEANQMFD 319

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G  A+ ++YN L+ G+C+  +++   +L REM+    +  + V+YN LI GF   
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV-SNTVTYNTLIQGFFQA 378

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            D   A  FF++M   GI+P   +Y  L+     + + + A  +F++M +   + +DIV 
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM-QKREMDLDIVT 437

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  ++ G C+ G VEEA  +   +   G  P++ TY ++ +G+       E   L+ ++K
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDA------LADICVRAAFFRKALEIV 502
           +   +K +   +D D+    +  +++L        L DI  ++   +KAL ++
Sbjct: 498 QEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDI--KSGVCKKALSLL 548



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 184/407 (45%), Gaps = 60/407 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD  AYNA++++     +       F ++   G +P+V+TY  ++     +SR      
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 246

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +++  IT  + T+ +L+ A+V  G +  A+                          
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK-------------------------- 280

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                      E+FE+++  SI+P             +   Y++L+ G     R+ +  +
Sbjct: 281 -----------ELFEEMVRMSIDP-------------DIVTYSSLINGLCLHDRIDEANQ 316

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M   M  +       D V+Y T+++   KA  ++   ++  EM++ G+ +N +TYN L++
Sbjct: 317 MFDLMVSK---GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ Q   +DKA+E   +M D   I PD+ +YNIL+ G     +   AL  F +M+ R + 
Sbjct: 374 GFFQAGDVDKAQEFFSQM-DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 432

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++YTT+++    + + + A  +F   L    +K DIV +  ++ G C  GL+ E + 
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCS-LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491

Query: 415 IIERMKENGFYPNVATY--GSLANGISLARK---PGEALLLWKEIKE 456
           +  +MK+ G   N  T   G +     L +K    G A  L K+IK 
Sbjct: 492 LYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKS 538



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 59/223 (26%)

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           + ++++ A +L  +M   ++  P +V +N L+   + +      ++   +M   GI    
Sbjct: 62  RDIKLNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDL 120

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            ++  ++  F    Q  LA  +  +ML+   +P    D V    LV G+CR   V +A  
Sbjct: 121 YTFNIVINCFCCCFQVSLALSILGKMLKLGYEP----DRVTIGSLVNGFCRRNRVSDAVS 176

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++++M E G+ P++  Y ++ + +                   C+ K+  VN   D    
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSL-------------------CKTKR--VNDAFD---- 211

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                              FF++       +E  GI PN   Y
Sbjct: 212 -------------------FFKE-------IERKGIRPNVVTY 228


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 214/456 (46%), Gaps = 31/456 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+V +++ ++  L    ++   E+++L  ++         PD   D  PD  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLC--DENRSQEALELLQMM---------PDDGGDCPPDVVS 201

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  V+N     G   K    + +M + G  P+V+TY+ +I    +A      + VL  ++
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S+V  Y   G  + A   ++ M     +   ++    L DY  +N G 
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP-DVVTYNSLMDYLCKN-GR 319

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F+ +    + P                 Y TL++GY  +G + +   +L  M 
Sbjct: 320 CTEARKMFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMHGLLDLMV 366

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N  HP+H  ++ ++ A  K G +D+A  V ++M + G+  + +TY  ++   C+  
Sbjct: 367 R---NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ A     +M D+ ++ P  + YN LI    + D    A     EM  RGI    I +
Sbjct: 424 RVEDAMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFF 482

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++ +     +   + K+FD M+R   VK DI+ ++ L++GYC  G ++EA +++  M 
Sbjct: 483 NSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             G  P+  TY +L NG     +  +AL+L++E++ 
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMES 577



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 202/457 (44%), Gaps = 70/457 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G LP+V  +S++++ L  A   D      K  +V+   V+        +   P+  
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMD------KAMEVLTSMVK--------NGVMPNCR 270

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++   + G+PK+ +    +MH  G +PDV+TYN ++    +  R      + + +
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+   +TT+ +L+  Y   G L                               E  G
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGAL------------------------------VEMHG 360

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                  + + ++ N I+P             N  +++ L+  Y  +G+V   + +   M
Sbjct: 361 -------LLDLMVRNGIHP-------------NHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R+Q  N   PD VTY TV+  L K+G ++ A +   +M    +    I YN L+   C  
Sbjct: 401 RQQGLN---PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            + DKAKEL+ EM D   I  D + +N +ID          +   F+ M   G+ P  I+
Sbjct: 458 DKWDKAKELILEMLDRG-ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 516

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+TL+  + L+ +   A K+   M+    +K D V +N L+ GYC++  +E+A  +   M
Sbjct: 517 YSTLIDGYCLAGKMDEATKLLASMV-SVGMKPDCVTYNTLINGYCKISRMEDALVLFREM 575

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + +G  P++ TY  +  G+   R+   A  L+  I E
Sbjct: 576 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITE 612



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/466 (21%), Positives = 213/466 (45%), Gaps = 54/466 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++G +P+ + ++++V    +SG   P E++         ++K     +    +PD   
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQ--PKEAIGF-------LKKMHSDGV----EPDVVT 306

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G+  +  ++FD M + G KP++ TY  +++  A       +  +L+ ++
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             GI      F  L+ AY   G ++ A  +   MR+   +        D   Y +     
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP-------DTVTYGTVIGIL 419

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNS 213
              G  +D    FE+++   ++P +                         +L +    ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             + +++  +  EGRV ++ ++   M R       PD +TY+T++     AG MD A ++
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRI---GVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA M  +G+  + +TYN L+ GYC+  +++ A  L REM + + + PD+++YNI++ G  
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESSGVSPDIITYNIILQGLF 595

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVD 392
               +A A   +  +   G      +Y  ++     ++    A ++F  + L D  ++++
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD--LQLE 653

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
              +N+++    ++G  +EAK +   +  NG  P+V TY  +A  +
Sbjct: 654 TRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 130/259 (50%), Gaps = 9/259 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y  L+KG  +E R  + + +L  M   +     PD V+YTTV++   K G +D+A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELL-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                EM   G+  N +TY+ ++   C+   +DKA E+L  M  +  + P+  +YN ++ 
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG-VMPNCRTYNSIVH 277

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+        A+ F  +M + G+ P  ++Y +LM     + +   A K+FD M +   +K
Sbjct: 278 GYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG-LK 336

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +I  +  L++GY   G + E   +++ M  NG +PN   +  L    +   K  +A+L+
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLV 396

Query: 451 WKEIKERCEVKKEGVNADS 469
           + ++++      +G+N D+
Sbjct: 397 FSKMRQ------QGLNPDT 409



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 208/504 (41%), Gaps = 74/504 (14%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P++ TY ++I  C  A R  L    L  +++ G  +    
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+       D   ++ +   +R   +  C  I  +   +   +   D++   E  E 
Sbjct: 129 FTPLLKGLCA--DKRTSDAMDIVLRRMTQLGC--IPNVFSYNILLKGLCDENRSQEALE- 183

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           LL    +   + P       P+   YTT++ G+  EG   D  +  G      D    P+
Sbjct: 184 LLQMMPDDGGDCP-------PDVVSYTTVINGFFKEG---DLDKAYGTYHEMLDRGILPN 233

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY+++++AL KA +MD+A +VL  M + GV  N  TYN ++ GYC   Q  +A   L+
Sbjct: 234 VVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL- 369
           +M  D  +EPDVV+YN L+D          A   F+ M  RG+ P   +Y TL++ +A  
Sbjct: 294 KMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 370 --------------------------------SSQPKL--ANKVFDEMLRDPRVKVDIVA 395
                                           + Q K+  A  VF +M R   +  D V 
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM-RQQGLNPDTVT 411

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  ++   C+ G VE+A R  E+M +    P    Y SL + + +  K  +A  L  E+ 
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 456 ER--C-----------EVKKEGVNADSD------LPPPLKPDEELLDALADICVRAAFFR 496
           +R  C              KEG   +S+      +   +KPD      L D    A    
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
           +A +++A M   G+ P+   Y  +
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 129/299 (43%), Gaps = 30/299 (10%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R   +   P+  TY  ++ +   AG +D     L  + + G   + I +  LLKG C 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 299 QLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAP 355
             +   A ++ LR M     I P+V SYNIL+ G    + S  AL     M   G    P
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPP 197

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SYTT++  F        A   + EML D  +  ++V ++ ++   C+   +++A  +
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEML-DRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M +NG  PN  TY S+ +G   + +P EA+   K++        +GV          
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS------DGV---------- 300

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------KKIYVEMH 525
           +PD    ++L D   +     +A ++   M + G+ P  T Y         K   VEMH
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 217/479 (45%), Gaps = 50/479 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V ++S ++  L   G  G  + +         +R  ++   V    P+  AYN V
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDL---------LRMMAEGGAVC--SPNVVAYNTV 225

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC-ARASRK---HLLVFVLERI 119
           ++     G   K   LF +M + G  PD++TYN ++  LC ARA  K    L   V +R+
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 285

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L         T+ +L+  Y   G  + A  + + MR  R  +   +  L +   S    G
Sbjct: 286 LPNN-----WTYNNLIYGYSSTGQWKEAVRVFKEMR--RHSILPDVVTLSMLMGSLCKYG 338

Query: 180 DDDDDDEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYT 217
              +  +VF+ +     NP            +++  L+  T           AP+   + 
Sbjct: 339 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 398

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+K Y N G +   + +   MR   D+   PD VTY TV++AL + G MD A +   +M
Sbjct: 399 VLIKAYANCGMLDKAMIIFNEMR---DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 455

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              GV  ++  YN L++G+C    + KAKEL+ E+ ++  +  D+V ++ +I+    +  
Sbjct: 456 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVFFSSIINNLCKLGR 514

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   F+     G+ P  + Y+ LM  + L  + + A +VFD M+    ++ ++V + 
Sbjct: 515 VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV-SAGIEPNVVVYC 573

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            LV GYC++G ++E   +   M + G  P+   Y  + +G+  A +   A + + E+ E
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTE 632



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 129/548 (23%), Positives = 220/548 (40%), Gaps = 106/548 (19%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 80  SAACRSGPALAVALFNRAASRAQ---GPRVLS---PTSHTYAILMDCCTRAHRPELALAF 133

Query: 81  FDQM---------------------------------H---EFGAKPDVLTYNVMIK-LC 103
           F Q+                                 H   E G  PDV +Y++++K LC
Sbjct: 134 FGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLC 193

Query: 104 ARASRKHLLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            +          L R++  G  +C   +  + +++  +   GD+  A             
Sbjct: 194 DQGKSGQ--ADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKA------------- 238

Query: 161 VCKIIREL-------DLEDYSSE----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
            C + +E+       DL  Y+S      +    D  E F + + N            K  
Sbjct: 239 -CDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN------------KRV 285

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN+  Y  L+ GY + G+  + VR+   MRR    +  PD VT + ++ +L K G +  
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH---SILPDVVTLSMLMGSLCKYGKIKE 342

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR V   M   G   +  +YNI+L GY  +  +    +L   M  D  I PD  ++N+LI
Sbjct: 343 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDFYTFNVLI 401

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
             +        A+  FNEMR  G+ P  ++Y T++ A     +   A + F++M+ D  V
Sbjct: 402 KAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGV 460

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D  A+N L++G+C  G + +AK +I  +  NG + ++  + S+ N +    +  +A  
Sbjct: 461 APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQN 520

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           ++                D  +   L PD  +   L D         KAL +   M   G
Sbjct: 521 IF----------------DLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 510 IPPNKTKY 517
           I PN   Y
Sbjct: 565 IEPNVVVY 572



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 204/481 (42%), Gaps = 60/481 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    + ++ +    GK K+   +FD M   G  PDV +YN+M+   A       +  +
Sbjct: 322 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 381

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDV----------CK 163
            + +L  GI     TF  L+ AY   G L+ A  I   MR+   + DV          C+
Sbjct: 382 FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           I              G  DD  E F +++   +             AP+   Y  L++G+
Sbjct: 442 I--------------GKMDDAMEKFNQMIDQGV-------------APDKYAYNCLIQGF 474

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
              G +     ++  +    +N  H D V ++++++ L K G +  A+ +      +G+ 
Sbjct: 475 CTHGSLLKAKELISEIM---NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 531

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            + + Y++L+ GYC   +++KA  +   M   A IEP+VV Y  L++G+  I      L+
Sbjct: 532 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNVVVYCTLVNGYCKIGRIDEGLS 590

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
            F EM  RGI P+ I Y+ ++     + +   A   F EM  +  + +DI  +N+++ G 
Sbjct: 591 LFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEM-TESGIAMDICTYNIVLRGL 649

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
            +    +EA  + + ++      N+ T  ++ +G+   R+  EA  L+  I         
Sbjct: 650 FKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR------- 702

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
                S L P +     ++  L    ++     +A ++ + M+  G  PN      +  E
Sbjct: 703 -----SRLVPSVVTYSIMITNL----IKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRE 753

Query: 524 M 524
           +
Sbjct: 754 L 754



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 141/352 (40%), Gaps = 57/352 (16%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P+  +P S  Y  LM       R    +   G + R        + +    ++    +A 
Sbjct: 104 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLR---TGLRVNIIIANHLLEGFCEAK 160

Query: 266 SMDRARQVLAEMT-RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI-EPDVV 323
             D A  +L   T  +G   +  +Y+ILLK  C Q +  +A +LLR MA+   +  P+VV
Sbjct: 161 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVV 220

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA----------------- 366
           +YN +IDGF    D   A   F EM  RGI P  ++Y +++ A                 
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 280

Query: 367 ------------------FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
                             ++ + Q K A +VF EM R   +  D+V  +ML+   C+ G 
Sbjct: 281 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS-ILPDVVTLSMLMGSLCKYGK 339

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           ++EA+ + + M   G  P+V +Y  + NG +                + C V    +  D
Sbjct: 340 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYA---------------TKGCLVDMTDL-FD 383

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L   + PD    + L           KA+ I   M +HG+ P+   Y+ +
Sbjct: 384 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 435



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 182/448 (40%), Gaps = 75/448 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V +++ +++  A  G    V+   LFD+++                PD   
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKG--CLVDMTDLFDLMLG-----------DGIAPDFYT 396

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A AN G   K + +F++M + G KPDV+TY  +I    R  +    +    +++
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----------DVCKIIREL 168
           + G+      +  L+  +   G L  A E I + M  G             ++CK+ R +
Sbjct: 457 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 516

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
           D ++            D V   +L +      +     + F         PN  +Y TL+
Sbjct: 517 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 576

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY   GR+ + + +    R        P  + Y+ ++  L +AG    A+    EMT  
Sbjct: 577 NGYCKIGRIDEGLSLF---REMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTES 633

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSA 339
           G+  +  TYNI+L+G  +    D+A  L +E+ A + KI  ++++ N +IDG        
Sbjct: 634 GIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI--NIITLNTMIDGMF------ 685

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
                    + R +   K  + ++ ++                     R+   +V ++++
Sbjct: 686 ---------QTRRVEEAKDLFASISRS---------------------RLVPSVVTYSIM 715

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPN 427
           +    + GLVEEA+ +   M+  G  PN
Sbjct: 716 ITNLIKEGLVEEAEDMFSSMQNAGCEPN 743


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 201/464 (43%), Gaps = 71/464 (15%)

Query: 12  AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
            + TVV  + +SGD DG    VK                I S  +P+   Y  ++     
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVK--------------EMIASGCRPNVVIYTTLIKTFLQ 464

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
             +    +++  +M E G  PD+  YN +I   ++A R       L  ++E G+     T
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           + + ++ Y+   +   A+  V+ MRE      K++    + +Y  + +        V E 
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK--------VIEA 576

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
                   S+   ++ +    +++ YT LM G     +V D   +   MR +      PD
Sbjct: 577 C-------SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK---GIAPD 626

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
             +Y  +++   K G+M +A  +  EM   G+  N I YN+LL G+C+  +I+KAKELL 
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM------ 364
           EM+    + P+ V+Y  +IDG+    D A A   F+EM+ +G+ P    YTTL+      
Sbjct: 687 EMSVKG-LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRL 745

Query: 365 --------------KAFALSSQP--KLANKVF--------DEMLR-------DPRVKVDI 393
                         K  A S+ P   L N VF         E+L        D   K + 
Sbjct: 746 NDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPND 805

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           V +N++++  C+ G +E AK +  +M+     P V TY SL NG
Sbjct: 806 VTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 144/325 (44%), Gaps = 54/325 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN  IYTTL+K ++   R  D +R+L  M+ Q      PD   Y +++  L KA  MD A
Sbjct: 450 PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ---GIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD---------------- 314
           R  L EM   G+  N  TY   + GY +  +   A + ++EM +                
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 315 ------------------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                             D  I  D  +Y +L++G    D    A   F EMR +GIAP 
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             SY  L+  F+     + A+ +FDEM+ +  +  +++ +NML+ G+CR G +E+AK ++
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           + M   G +PN  TY ++ +G   +    EA  L+ E+K +                 L 
Sbjct: 686 DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK----------------GLV 729

Query: 477 PDEELLDALADICVRAAFFRKALEI 501
           PD  +   L D C R     +A+ I
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITI 754



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 179/408 (43%), Gaps = 44/408 (10%)

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
           R   D  I+ D+K     Y  ++N      K     ++F +M   G  PDV +Y V+I  
Sbjct: 581 RSMVDQGILGDAK----TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREG 157
            ++         + + ++E G+T  +  +  L+  +   G++E A     E  V+ +   
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
               C II     + Y     GD  +   +F++             +  K   P+S +YT
Sbjct: 697 AVTYCTII-----DGYC--KSGDLAEAFRLFDE-------------MKLKGLVPDSFVYT 736

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TL+ G      V   + + G  ++   +++ P    +  +++ + K G  +   +VL  +
Sbjct: 737 TLVDGCCRLNDVERAITIFGTNKKGCASSTAP----FNALINWVFKFGKTELKTEVLNRL 792

Query: 278 T-----RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
                 R G P N +TYNI++   C++  ++ AKEL  +M  +A + P V++Y  L++G+
Sbjct: 793 MDGSFDRFGKP-NDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITYTSLLNGY 850

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR----DPR 388
             +   A     F+E  A GI P  I Y+ ++ AF        A  + D+M      D  
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDG 910

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            K+ I     L+ G+ ++G +E A++++E M    + P+ AT   L N
Sbjct: 911 CKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 190/462 (41%), Gaps = 39/462 (8%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+L + M   G  P   TY+V+I    +  R      +L  +  +G++L   T+  L+  
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
            +   + + A+ +V  M     ++   + +  +   S   EG  +    +F+ ++ + + 
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMS--KEGVMEKAKALFDGMIASGLI 379

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P ++              Y +L++GY  E  V     +L  M+++    S     TY TV
Sbjct: 380 PQAQA-------------YASLIEGYCREKNVRQGYELLVEMKKRNIVIS---PYTYGTV 423

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           V  +  +G +D A  ++ EM   G   N + Y  L+K + Q  +   A  +L+EM +   
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG- 482

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I PD+  YN LI G         A +F  EM   G+ P   +Y   +  +  +S+   A+
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K   EM R+  V  + V    L+  YC+ G V EA      M + G   +  TY  L NG
Sbjct: 543 KYVKEM-RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601

Query: 438 ISLARKPGEALLLWKEIKER-------------------CEVKKEGVNADSDLPPPLKPD 478
           +    K  +A  +++E++ +                     ++K     D  +   L P+
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             + + L     R+    KA E++  M   G+ PN   Y  I
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTI 703



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 26/315 (8%)

Query: 232 TVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           T+ + GA++ +E        P   TY  ++  L K   ++ A+ +L EM  +GV  +  T
Sbjct: 255 TLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHT 314

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           Y++L+ G  +    D AK L+ EM      I+P +    I +     + + A AL  F+ 
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKAL--FDG 372

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M A G+ P   +Y +L++ +      +   ++  EM +   + +    +  +V+G C  G
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEM-KKRNIVISPYTYGTVVKGMCSSG 431

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            ++ A  I++ M  +G  PNV  Y +L        + G+A+ + KE+KE+          
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ---------- 481

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI---YVEM 524
                  + PD    ++L     +A    +A   +  M E+G+ PN   Y      Y+E 
Sbjct: 482 ------GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535

Query: 525 HSRMFTSKHASQARQ 539
                  K+  + R+
Sbjct: 536 SEFASADKYVKEMRE 550



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 63/324 (19%), Positives = 124/324 (38%), Gaps = 46/324 (14%)

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----------------- 298
            ++ AL++   +D    V   M    V  +  TY++L+  +C+                 
Sbjct: 191 VLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKE 250

Query: 299 ----QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
                L +D A +L   M     + P   +Y++LIDG   I     A +   EM + G++
Sbjct: 251 FRTATLNVDGALKLKESMICKGLV-PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVS 309

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
               +Y+ L+           A  +  EM+    + +    ++  +    + G++E+AK 
Sbjct: 310 LDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHG-INIKPYMYDCCICVMSKEGVMEKAKA 368

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EGVN 466
           + + M  +G  P    Y SL  G    +   +   L  E+K+R  V          +G+ 
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 467 ADSDL-----------PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +  DL               +P+  +   L    ++ + F  A+ ++  M+E GI P+  
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 516 KYKKIYVEMHSRMFTSKHASQARQ 539
            Y  + + +      +K   +AR 
Sbjct: 489 CYNSLIIGLSK----AKRMDEARS 508


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 224/506 (44%), Gaps = 71/506 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   YN++++ C+   +  K   L+D+M   G  P  +T+N +I  C R+  +     
Sbjct: 398 KPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWR 457

Query: 115 VLERILEMGITLCMTTF-------------QSLVAAYVGFGDLEIAETIV--QAMREGRR 159
           VLE++ E  +     T+             Q L  A+V +  L+ +      + +     
Sbjct: 458 VLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLL 517

Query: 160 DVCKIIRELD--------LEDYSSE----NEGDDDDDDEVFE------KLLPNSINPSSE 201
           D C   ++LD        L+  S      +  DD D+    E      K  P  +N S+ 
Sbjct: 518 DACINCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNH 577

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
             + P   +     + T++KG   E ++     M   M+ Q      P+ VTY +++ A 
Sbjct: 578 HFMRPDEIS-----FNTIIKGCAQEKKLQLAFEMFNLMKMQ---CLKPNDVTYNSLIDAC 629

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ----------IDKAKELLRE 311
           V+   ++ A Q+L+EM +  +  +  TY+ L+KG   + Q          ++KA  LL +
Sbjct: 630 VRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQ 689

Query: 312 M-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           M   +  ++PD + YN LID  +   D   A+  F EM+   I P+ ++Y  L+KA+  +
Sbjct: 690 MKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSA 749

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           +Q   A  VF +M +D  +  + V +  L++   +   +E A  + E MK +G   N   
Sbjct: 750 NQLDNAFFVFKKM-KDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTII 808

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           + +L  G + + K  +AL +++ +K               +   +KP+    ++L D C+
Sbjct: 809 FTTLIKGFAKSFKLDQALEVYQIMK---------------MDDKIKPNNVTFNSLIDCCI 853

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTK 516
           R    +KA+EI    EE   P + TK
Sbjct: 854 RCNSIKKAMEI---FEEMKQPISHTK 876



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 122/499 (24%), Positives = 227/499 (45%), Gaps = 68/499 (13%)

Query: 48   PDIVSDS-----KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
            P +V+ S     +PD  ++N ++  CA   K +   ++F+ M     KP+ +TYN +I  
Sbjct: 569  PAVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDA 628

Query: 103  CARASRKHLLVFVLERILEMGITLCMTTFQSLV-------AAYVGFG---DLEIAETIVQ 152
            C R +R +    +L  + +  I     T+ +L+        +  G     DLE A  +++
Sbjct: 629  CVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLE 688

Query: 153  AMREGRRDV--------CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
             M++    V        C I   +   D +            VF+++  ++I PSS    
Sbjct: 689  QMKQSNGGVKPDEILYNCLIDACVRFHDVNRA--------VAVFQEMQFSNIKPSS---- 736

Query: 205  LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                       Y  L+K Y +  ++ +   +   M+   DN   P+ VTY  ++ A VK 
Sbjct: 737  ---------VTYGILIKAYGSANQLDNAFFVFKKMK---DNCLIPNSVTYGCLIDACVKN 784

Query: 265  GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
              ++RA +V   M R GV  N I +  L+KG+ +  ++D+A E+ + M  D KI+P+ V+
Sbjct: 785  NQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVT 844

Query: 325  YNILIDGFILIDDSAGALTFFNEMRARGIAPTK---ISYTTLMKAFALSSQPKLANKVFD 381
            +N LID  I  +    A+  F EM+ + I+ TK   I+Y+T++K F      + A  + +
Sbjct: 845  FNSLIDCCIRCNSIKKAMEIFEEMK-QPISHTKPDLITYSTMIKGFCREKNIQQALIMLN 903

Query: 382  EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
            +M ++  +  D V +N L++G C+   +E A ++ + M+     P+  TY  L       
Sbjct: 904  DMEKN-NIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQ 962

Query: 442  RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
            R   +AL + +E+      KK+G+          +P   +   L   C+++   + A ++
Sbjct: 963  RNLPKALGVLEEM------KKDGI----------RPGLIVYTCLLQTCIKSRQLKTAEQL 1006

Query: 502  VACMEEHGIPPNKTKYKKI 520
               M   GI  ++  Y+ +
Sbjct: 1007 FHDMRIQGIRGDQLTYQTM 1025



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/460 (21%), Positives = 204/460 (44%), Gaps = 67/460 (14%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAA-----SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK 55
            M ++  +P    +ST++  + A     +G   P++  K F ++ +   K S+  +    K
Sbjct: 645  MQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQM--KQSNGGV----K 698

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD   YN +++AC       + + +F +M     KP  +TY ++IK    A++     FV
Sbjct: 699  PDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFV 758

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             +++ +  +     T+  L+ A V    +E A  + + M+   RD  ++           
Sbjct: 759  FKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMK---RDGVQL----------- 804

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                                N+ I+TTL+KG+    ++   + +
Sbjct: 805  ------------------------------------NTIIFTTLIKGFAKSFKLDQALEV 828

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR--IGVPANRITYNILL 293
               M+   D+   P++VT+ +++   ++  S+ +A ++  EM +       + ITY+ ++
Sbjct: 829  YQIMKM--DDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMI 886

Query: 294  KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            KG+C++  I +A  +L +M  +  I  D V YN L+DG    ++   AL  +  M    I
Sbjct: 887  KGFCREKNIQQALIMLNDMEKN-NIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKI 945

Query: 354  APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             P+ ++Y+ L+K +        A  V +EM +D  ++  ++ +  L++   +   ++ A+
Sbjct: 946  KPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDG-IRPGLIVYTCLLQTCIKSRQLKTAE 1004

Query: 414  RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
            ++   M+  G   +  TY ++ NG   ++K    L+L K+
Sbjct: 1005 QLFHDMRIQGIRGDQLTYQTMINGCLYSQKFDSILILLKD 1044



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 96/458 (20%), Positives = 194/458 (42%), Gaps = 69/458 (15%)

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +  IT   +T +S + +Y    DLE+++ +   +R  +R          L++ S  N  +
Sbjct: 98  QRAITSQQSTLESNILSYEE--DLEMSQMLYYYVRMCQR----------LKNISQTNTSE 145

Query: 181 DDDDDEV-FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN---EGRVSDTVRML 236
             D ++V FE  L      SS+   +      +    T+LM+  +N    G+  DT + +
Sbjct: 146 SQDQNQVGFESKLS----LSSKILQIYGDKDIDISAVTSLMEALLNYRKNGQFYDTYQEV 201

Query: 237 GAMRRQED--NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY-NILL 293
                ++D  N     H  +     A++   S  +   ++  M+ + +P    ++ N ++
Sbjct: 202 VTRLTRDDCINNQKDLHNFFGVTAKAIMLTKSAHKGVLMIKLMSELNIPVLVESHLNPVI 261

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVS--YNILIDGFILIDDSAGALTFFNEMRAR 351
           +G  +    +  + L++E   +AK    + S    I +  +  ++ +  AL +F++++  
Sbjct: 262 EGCFR----NGKQNLVQEAVHNAKRTDFLASSTLKIFVKYYSRLNQTQTALQYFHQLQQT 317

Query: 352 GIAPTKISY--------TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
             A    +Y         +L+KA       ++ NKVF  + +D    +D++ ++ +++GY
Sbjct: 318 SQAQNDPTYYQTVNQMLDSLLKAELFEEAEQIYNKVF-TLSKDQPNCMDMMTFSCMIKGY 376

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
           CR   + +A  ++  MKE G  P+   Y S+ +G S   +  +A LL+ E+         
Sbjct: 377 CRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEM--------- 427

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
                  L   + P     ++L D CVR+    +A  ++  M+E  + P+   Y      
Sbjct: 428 -------LGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTY------ 474

Query: 524 MHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNS 561
             S +F    +   RQD  +       AF  +  L NS
Sbjct: 475 --STLFKGIKSENQRQDLEK-------AFVLYNQLQNS 503



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 116/279 (41%), Gaps = 57/279 (20%)

Query: 55   KPDTAAYNAVLNACANLGKPKKFLQLFDQMHE--FGAKPDVLTYNVMIKLCARASRKHLL 112
            KP+   +N++++ C      KK +++F++M +     KPD++TY+ MIK   R       
Sbjct: 839  KPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQA 898

Query: 113  VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            + +L  + +  I      + SL+       ++E+A  + + M     ++ KI        
Sbjct: 899  LIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNM-----EILKI-------- 945

Query: 173  YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                                                  P++  Y+ L+K Y   G+  + 
Sbjct: 946  -------------------------------------KPSNVTYSILIKIY---GKQRNL 965

Query: 233  VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             + LG +   + +   P  + YT ++   +K+  +  A Q+  +M   G+  +++TY  +
Sbjct: 966  PKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTM 1025

Query: 293  LKGYCQQLQIDKAKELLREMADDAKIE-PDVVSYNILID 330
            + G     + D    LL++ A D+K++ P  +S NIL +
Sbjct: 1026 INGCLYSQKFDSILILLKD-ASDSKVQLPHELSQNILTE 1063


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 206/453 (45%), Gaps = 52/453 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCA--RASRKHLL 112
           P+   YN +LN     G+ K  L++ D M + G + D+ TYN+MI KLC   R++R +LL
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLE 171
              L+R+ E+ +T    ++ +L+  + G G + +A  I  Q +R+  +        L ++
Sbjct: 322 ---LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTAL-ID 377

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINP---SSEPPLLPKTFA----PNSRIYTTLM---- 220
            Y     G  D+   V  ++    + P   S    +L    A    P+   Y+ L+    
Sbjct: 378 GYC--RNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINEGM 435

Query: 221 -------KGYMNEGRVSDTV--------------RMLGAMRRQEDNASH---PDHVTYTT 256
                  K YM+  ++S  V               +L A    ++   H   PD  TY +
Sbjct: 436 IAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGS 495

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  L + G + +A++ +  +       +  T N LL G C+   +D+A +L  +M    
Sbjct: 496 LLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTR- 554

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            I PD  +Y IL+DGF        AL     M  +G+ P  I+YT L+       Q K A
Sbjct: 555 NILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAA 614

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
           + +F E++    +  D +A+N ++ GY + G + E +R++  M EN  YP+ A+Y  L +
Sbjct: 615 SYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMH 674

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           G     +    L L++++       KEG+  D+
Sbjct: 675 GYIKKGQLSRTLYLYRDM------VKEGIKPDN 701



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 113/544 (20%), Positives = 224/544 (41%), Gaps = 113/544 (20%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARA---SRKHLL 112
           D A++N ++++    G   +   ++D M   G  PD+ TY  +++ LC        K  +
Sbjct: 454 DVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFM 513

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------------ 154
           V++LE+   +       T  +L+      G L+ A  + + M                  
Sbjct: 514 VYLLEKACAID----EKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDG 569

Query: 155 --REGRRDVCKIIRELDLED--------YSS-----ENEGDDDDDDEVFEKLLPNSINPS 199
             + G+     I+ ++ LE         Y+       NEG       +F++++       
Sbjct: 570 FCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEII------- 622

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
            +  L     A     Y ++M GY+  G++++  R+   MR   +N  +P   +Y  ++ 
Sbjct: 623 CKEGLYADCIA-----YNSMMNGYLKGGQINEIERL---MRNMHENEVYPSSASYNILMH 674

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
             +K G + R   +  +M + G+  + +TY +L+ G C+   I+ A + L +M  +  + 
Sbjct: 675 GYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEG-VF 733

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD ++++ILI  F      + AL  F+ M+   ++P+  +Y  ++      +  + + ++
Sbjct: 734 PDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEI 793

Query: 380 FDEM--------------LRDPRVKV-DI-------------------VAWNMLVEGYCR 405
             +M              L + + +V DI                   VA + +V G C+
Sbjct: 794 LHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCK 853

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
            G VEEA  +   +   G  P +AT+ +L +G+    K  +A  L K++ E C +K + V
Sbjct: 854 CGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHL-KQLMESCGLKVDVV 912

Query: 466 NADSDLPPPLKPDEELLDALAD---ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
             +            L+  L +   IC        AL++   M+  G+ PN T Y  +  
Sbjct: 913 TYNV-----------LITGLCNKKCIC-------DALDLYEEMKSKGLLPNITTYITLTG 954

Query: 523 EMHS 526
            M++
Sbjct: 955 AMYA 958



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/461 (20%), Positives = 198/461 (42%), Gaps = 75/461 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVK-LFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G +P   A++ +++ L    ++G V++   +F  ++ +   ++D            
Sbjct: 586 MLEKGLVPDTIAYTCLLNGLV---NEGQVKAASYMFQEIICKEGLYAD----------CI 632

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           AYN+++N     G+  +  +L   MHE    P   +YN+++    +  +    +++   +
Sbjct: 633 AYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDM 692

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++ GI     T++ L+     +G +EIA   ++ M                         
Sbjct: 693 VKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKM------------------------- 727

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                  V E + P+++                   +  L+K +  + ++S+ +++   M
Sbjct: 728 -------VLEGVFPDNLA------------------FDILIKAFSEKSKMSNALQLFSYM 762

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +    +   P   TY  +V+ L++   + ++ ++L +M   G+      Y  L+   C+ 
Sbjct: 763 KWLHMS---PSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRV 819

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             ID A EL  +M     + P  V+ + ++ G         A+  F+ +   G+ PT  +
Sbjct: 820 GDIDGAFELKEDM-KALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIAT 878

Query: 360 YTTLMKAFALSSQPKLANKV-FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +TTLM    L  + K+ +     +++    +KVD+V +N+L+ G C    + +A  + E 
Sbjct: 879 FTTLMHG--LCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEE 936

Query: 419 MKENGFYPNVATYGSLANGI--SLARKPGEALLLWKEIKER 457
           MK  G  PN+ TY +L   +  +   + GE LL  K+I++R
Sbjct: 937 MKSKGLLPNITTYITLTGAMYATGTMQDGEKLL--KDIEDR 975



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 55/285 (19%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           L + F  +      ++     +G++S    ML  M+    N   P+ VTY T+++  VK 
Sbjct: 222 LDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMK----NCRLPNAVTYNTILNWYVKK 277

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G    A ++L +M + G+ A+  TYNI++   C+  +  +A  LL+ M  +  + PD  S
Sbjct: 278 GRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRM-REVNLTPDECS 336

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM- 383
           YN LI GF        A+  FN+M  + + P+  +YT L+  +  + +   A +V  EM 
Sbjct: 337 YNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQ 396

Query: 384 ---LR-------------------DP---------------------------RVKVDIV 394
              +R                   DP                           ++  D+ 
Sbjct: 397 ITGVRPREVSKAKQILKCMLADGIDPDVITYSALINEGMIAEAEQFKQYMSRMKISFDVA 456

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           ++N +++ YC+ G V EA  + + M  +G+ P++ TYGSL  G+ 
Sbjct: 457 SFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLC 501



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 178/443 (40%), Gaps = 47/443 (10%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIK--LCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
           Q+   M   G  PDV+TY+ +I   + A A +        + +  M I+  + +F  ++ 
Sbjct: 410 QILKCMLADGIDPDVITYSALINEGMIAEAEQFK------QYMSRMKISFDVASFNCIID 463

Query: 137 AYVGFGDLEIAETIVQAM-REGRR-DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPN 194
           +Y   G++  A ++   M R G   D+C          Y S   G       V  K    
Sbjct: 464 SYCQRGNVLEAFSVYDNMVRHGWPPDICT---------YGSLLRGLCQGGHLVQAK---- 510

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
                    LL K  A + +   TL+ G    G + + + +   M  +      PD  TY
Sbjct: 511 ----EFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRN---ILPDTYTY 563

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           T ++    K G +  A  +L  M   G+  + I Y  LL G   + Q+  A  + +E+  
Sbjct: 564 TILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIIC 623

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
              +  D ++YN +++G++              M    + P+  SY  LM  +    Q  
Sbjct: 624 KEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLS 683

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
               ++ +M+++  +K D V + +L+ G C  GL+E A + +E+M   G +P+   +  L
Sbjct: 684 RTLYLYRDMVKEG-IKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDIL 742

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
               S   K   AL L+  +K                   + P  +   A+ +  +R  +
Sbjct: 743 IKAFSEKSKMSNALQLFSYMKWL----------------HMSPSSKTYVAMVNGLIRKNW 786

Query: 495 FRKALEIVACMEEHGIPPNKTKY 517
            +++ EI+  M E G+ P  T Y
Sbjct: 787 LQQSYEILHDMVESGLQPKHTHY 809



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 122/289 (42%), Gaps = 43/289 (14%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE--LLREMAD 314
           +V+A VK G +  A   +  M   G  A+  + N +L      + I+K++   L  + + 
Sbjct: 166 LVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNAL---VGINKSEYVWLFLKESL 222

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           D K   DV + NI+++        + A +   +M+   + P  ++Y T++  +    + K
Sbjct: 223 DRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRL-PNAVTYNTILNWYVKKGRCK 281

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A ++ D+M ++  ++ D+  +N++++  C++     A  +++RM+E    P+  +Y +L
Sbjct: 282 SALRILDDMEKNG-IEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTL 340

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD-IC---- 489
            +G     K   A+ ++ ++                L   LKP      AL D  C    
Sbjct: 341 IHGFFGEGKINLAIYIFNQM----------------LRQSLKPSVATYTALIDGYCRNGR 384

Query: 490 ---------------VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
                          VR     KA +I+ CM   GI P+   Y  +  E
Sbjct: 385 TDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINE 433



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 26/254 (10%)

Query: 222 GYMNEGRVSDTVRMLGAMRRQE--DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           G +++      +RML ++ +Q   D  +H     Y   V  LV+A    +A  VL  +  
Sbjct: 81  GKLDKAHGKLALRMLDSIVQQSGLDRITH----IYCMAVHILVQAQMPSQAMSVLRHLAL 136

Query: 280 IGV-----------------PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
            G                  P N  + ++L+  Y ++ ++  A   +  M D+   +  +
Sbjct: 137 TGFSCSAIFSSLLRTISRCDPTNLFSVDLLVNAYVKEGKVLDAAAAIFFM-DECGFKASL 195

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
            S N +++  + I+ S     F  E   R       +   ++ +     +   A  +  +
Sbjct: 196 FSCNNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQK 255

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M ++ R+  + V +N ++  Y + G  + A RI++ M++NG   ++ TY  + + +   +
Sbjct: 256 M-KNCRLP-NAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLK 313

Query: 443 KPGEALLLWKEIKE 456
           +   A LL K ++E
Sbjct: 314 RSARAYLLLKRMRE 327


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 216/519 (41%), Gaps = 80/519 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   ++  +NA    GK +  +QLF  M + G  P+V+TYN +I  LC   +      F
Sbjct: 311 PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRF 370

Query: 115 ----------------------------------VLERILEMGITLCMTTFQSLVAAYVG 140
                                             VL+  LE G T     + +L+  Y  
Sbjct: 371 KEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCK 430

Query: 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPN--SINP 198
            G+L  A  I   M     +   +     ++ +     G  +  + + E++L    SINP
Sbjct: 431 MGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKI--GQMEQAECILEEMLSRGFSINP 488

Query: 199 SSEPP--------------------LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            +                       +L +   PN  + TTL+ G   EG+ SD V +   
Sbjct: 489 GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVEL--- 545

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
             R  +     + VT   ++  L K G+M  A ++L +M   G   ++ITYN L+ G C+
Sbjct: 546 WFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCK 605

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++++  +L  EM     IEPD  +YN+LI G   I     A+  +NE ++R + P   
Sbjct: 606 EGKVEEGFKLRGEMVKQG-IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVY 664

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y  ++  +  + + +   K+F E+L    ++++ V +N L+  YCR G   EA ++ + 
Sbjct: 665 TYGVMIDGYCKADKIEEGEKLFTELLTQ-NLELNSVVYNTLIRAYCRNGNTVEAFKLHDD 723

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M+  G  P  ATY SL +G+    +  +A  L  E+      +KEG          L P+
Sbjct: 724 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM------RKEG----------LLPN 767

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                AL     +     K + ++  M  + I PNK  Y
Sbjct: 768 VVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 806



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/534 (20%), Positives = 211/534 (39%), Gaps = 96/534 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVK---RVRK 44
           M + G  P+V  ++ ++  L   G+             DG   ++  + V++    ++ K
Sbjct: 339 MEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEK 398

Query: 45  FSDPDIV------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           F++ + V          P+   YN +++    +G     L++   M   G  P+ +T N 
Sbjct: 399 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 458

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQA 153
           +I+   +  +      +LE +L  G ++    F +++         E A     E +++ 
Sbjct: 459 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 518

Query: 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP---------- 203
           MR     +  ++  L         EG   D  E++ +LL      +              
Sbjct: 519 MRPNDGLLTTLVGGLC-------KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKT 571

Query: 204 ------------LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
                       +L + F  +   Y TL+ G   EG+V +  ++ G M +Q      PD 
Sbjct: 572 GNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ---GIEPDT 628

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
            TY  ++  + + G +D A  +  E     +  N  TY +++ GYC+  +I++ ++L  E
Sbjct: 629 FTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 688

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           +     +E + V YN LI  +    ++  A    ++MR++GI PT  +Y++L+       
Sbjct: 689 LLTQ-NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIG 747

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE-------------------- 411
           + + A  + DEM R   +  ++V +  L+ GYC++G +++                    
Sbjct: 748 RMEDAKCLIDEM-RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 806

Query: 412 ---------------AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
                          A +++  M   G  P+  TY  L NG     K  E  LL
Sbjct: 807 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLL 860



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 108/494 (21%), Positives = 197/494 (39%), Gaps = 60/494 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P       +L++     + +K   +F+ M + G  PDV  ++  I    +  +    + +
Sbjct: 277 PTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQL 335

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE------LD 169
              + ++G++  + T+ +L+      G+L+ A    + M +   +   I         + 
Sbjct: 336 FFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMK 395

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           LE ++  N                     S     L K F PN  +Y TL+ GY   G +
Sbjct: 396 LEKFNEAN---------------------SVLKETLEKGFTPNEVVYNTLIDGYCKMGNL 434

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D +R+ G M  +  N   P+ VT  +++    K G M++A  +L EM   G   N   +
Sbjct: 435 GDALRIRGDMVSKGIN---PNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAF 491

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
             ++   C   + + A   LREM     + P+      L+ G       + A+  +  + 
Sbjct: 492 TTIIHWLCMNSRFESALRFLREML-LRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLL 550

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            +G     ++   L+     +   + A ++  +ML    V +D + +N L+ G C+ G V
Sbjct: 551 EKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFV-LDKITYNTLISGCCKEGKV 609

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER------------ 457
           EE  ++   M + G  P+  TY  L +G+    K  EA+ LW E K R            
Sbjct: 610 EEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVM 669

Query: 458 ----CEVKK--EGVNADSDLPPPLKPDEELLDALADICVRAAFFR-----KALEIVACME 506
               C+  K  EG    ++L   L  + EL   + +  +R A+ R     +A ++   M 
Sbjct: 670 IDGYCKADKIEEGEKLFTEL---LTQNLELNSVVYNTLIR-AYCRNGNTVEAFKLHDDMR 725

Query: 507 EHGIPPNKTKYKKI 520
             GIPP    Y  +
Sbjct: 726 SKGIPPTTATYSSL 739



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 183/417 (43%), Gaps = 33/417 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G+  +  A++T++  L  +           F+  ++ +R+     ++ + +P+   
Sbjct: 479 MLSRGFSINPGAFTTIIHWLCMNSR---------FESALRFLREM----LLRNMRPNDGL 525

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              ++      GK    ++L+ ++ E G   +++T N +I    +       V +L+++L
Sbjct: 526 LTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKML 585

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G  L   T+ +L++     G +E    +       R ++ K   E D   Y+    G 
Sbjct: 586 ERGFVLDKITYNTLISGCCKEGKVEEGFKL-------RGEMVKQGIEPDTFTYNLLIHGM 638

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                      L  ++N  +E     +   PN   Y  ++ GY    ++ +  ++   + 
Sbjct: 639 CRIGK------LDEAVNLWNECK--SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELL 690

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            Q       + V Y T++ A  + G+   A ++  +M   G+P    TY+ L+ G C   
Sbjct: 691 TQNLEL---NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIG 747

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ AK L+ EM  +  + P+VV Y  LI G+  +      +    EM +  I P KI+Y
Sbjct: 748 RMEDAKCLIDEMRKEGLL-PNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 806

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           T ++  ++ S   K A K+  EM+    V  D V +N+L  G+C+ G +EE K + E
Sbjct: 807 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVP-DTVTYNVLTNGFCKEGKIEEGKLLAE 862



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 139/307 (45%), Gaps = 22/307 (7%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   P  +  T L+   +    +  +  +   MR+       PD   ++T ++A  K G 
Sbjct: 273 KGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ----GVSPDVYLFSTAINAFCKGGK 328

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           ++ A Q+  +M ++GV  N +TYN L+ G C+   +D+A     +M  D  +   +++Y+
Sbjct: 329 VEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDG-VNATLITYS 387

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +LI+G + ++    A +   E   +G  P ++ Y TL+  +        A ++  +M+  
Sbjct: 388 VLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSK 447

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  + V  N +++G+C++G +E+A+ I+E M   GF  N   + ++ + + +  +   
Sbjct: 448 -GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 506

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           AL   +E+  R                 ++P++ LL  L     +      A+E+   + 
Sbjct: 507 ALRFLREMLLR----------------NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLL 550

Query: 507 EHGIPPN 513
           E G   N
Sbjct: 551 EKGFGAN 557



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 24/250 (9%)

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQ---IDKAKELLREMADDAKIEPDVVSYNILID 330
           L E+   GV    +  ++L+  YC Q +      A  + R +A+   + P V +   L+ 
Sbjct: 231 LNEVGESGVAVAAV--DLLIHVYCTQFRNVGFRNAIGVFRFLANKG-VFPTVKTCTFLLS 287

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
             +  ++   +   F  MR +G++P    ++T + AF    + + A ++F +M     V 
Sbjct: 288 SLVKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDM-EKLGVS 345

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++V +N L+ G C+ G ++EA R  E+M ++G    + TY  L NG+    K  EA  +
Sbjct: 346 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSV 405

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            KE  E+                   P+E + + L D   +      AL I   M   GI
Sbjct: 406 LKETLEK----------------GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGI 449

Query: 511 PPNKTKYKKI 520
            PN      I
Sbjct: 450 NPNSVTLNSI 459


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 201/464 (43%), Gaps = 71/464 (15%)

Query: 12  AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
            + TVV  + +SGD DG    VK                I S  +P+   Y  ++     
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVK--------------EMIASGCRPNVVIYTTLIKTFLQ 464

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
             +    +++  +M E G  PD+  YN +I   ++A R       L  ++E G+     T
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           + + ++ Y+   +   A+  V+ MRE      K++    + +Y  + +        V E 
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK--------VIEA 576

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
                   S+   ++ +    +++ YT LM G     +V D   +   MR +      PD
Sbjct: 577 C-------SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK---GIAPD 626

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
             +Y  +++   K G+M +A  +  EM   G+  N I YN+LL G+C+  +I+KAKELL 
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM------ 364
           EM+    + P+ V+Y  +IDG+    D A A   F+EM+ +G+ P    YTTL+      
Sbjct: 687 EMSVKG-LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRL 745

Query: 365 --------------KAFALSSQP--KLANKVF--------DEMLR-------DPRVKVDI 393
                         K  A S+ P   L N VF         E+L        D   K + 
Sbjct: 746 NDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPND 805

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           V +N++++  C+ G +E AK +  +M+     P V TY SL NG
Sbjct: 806 VTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 144/325 (44%), Gaps = 54/325 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN  IYTTL+K ++   R  D +R+L  M+ Q      PD   Y +++  L KA  MD A
Sbjct: 450 PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ---GIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD---------------- 314
           R  L EM   G+  N  TY   + GY +  +   A + ++EM +                
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 315 ------------------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                             D  I  D  +Y +L++G    D    A   F EMR +GIAP 
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             SY  L+  F+     + A+ +FDEM+ +  +  +++ +NML+ G+CR G +E+AK ++
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEKAKELL 685

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           + M   G +PN  TY ++ +G   +    EA  L+ E+K +                 L 
Sbjct: 686 DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK----------------GLV 729

Query: 477 PDEELLDALADICVRAAFFRKALEI 501
           PD  +   L D C R     +A+ I
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITI 754



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 179/408 (43%), Gaps = 44/408 (10%)

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
           R   D  I+ D+K     Y  ++N      K     ++F +M   G  PDV +Y V+I  
Sbjct: 581 RSMVDQGILGDAK----TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREG 157
            ++         + + ++E G+T  +  +  L+  +   G++E A     E  V+ +   
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
               C II     + Y     GD  +   +F++             +  K   P+S +YT
Sbjct: 697 AVTYCTII-----DGYC--KSGDLAEAFRLFDE-------------MKLKGLVPDSFVYT 736

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TL+ G      V   + + G  ++   +++ P    +  +++ + K G  +   +VL  +
Sbjct: 737 TLVDGCCRLNDVERAITIFGTNKKGCASSTAP----FNALINWVFKFGKTELKTEVLNRL 792

Query: 278 T-----RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
                 R G P N +TYNI++   C++  ++ AKEL  +M  +A + P V++Y  L++G+
Sbjct: 793 MDGSFDRFGKP-NDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITYTSLLNGY 850

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR----DPR 388
             +   A     F+E  A GI P  I Y+ ++ AF        A  + D+M      D  
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDG 910

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            K+ I     L+ G+ ++G +E A++++E M    + P+ AT   L N
Sbjct: 911 CKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 190/462 (41%), Gaps = 39/462 (8%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+L + M   G  P   TY+V+I    +  R      +L  +  +G++L   T+  L+  
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
            +   + + A+ +V  M     ++   + +  +   S   EG  +    +F+ ++ + + 
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMS--KEGVMEKAKALFDGMIASGLI 379

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P ++              Y +L++GY  E  V     +L  M+++    S     TY TV
Sbjct: 380 PQAQA-------------YASLIEGYCREKNVRQGYELLVEMKKRNIVIS---PYTYGTV 423

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           V  +  +G +D A  ++ EM   G   N + Y  L+K + Q  +   A  +L+EM +   
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG- 482

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I PD+  YN LI G         A +F  EM   G+ P   +Y   +  +  +S+   A+
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K   EM R+  V  + V    L+  YC+ G V EA      M + G   +  TY  L NG
Sbjct: 543 KYVKEM-RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601

Query: 438 ISLARKPGEALLLWKEIKER-------------------CEVKKEGVNADSDLPPPLKPD 478
           +    K  +A  +++E++ +                     ++K     D  +   L P+
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             + + L     R+    KA E++  M   G+ PN   Y  I
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTI 703



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 26/315 (8%)

Query: 232 TVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           T+ + GA++ +E        P   TY  ++  L K   ++ A+ +L EM  +GV  +  T
Sbjct: 255 TLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHT 314

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           Y++L+ G  +    D AK L+ EM      I+P +    I +     + + A AL  F+ 
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKAL--FDG 372

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M A G+ P   +Y +L++ +      +   ++  EM +   + +    +  +V+G C  G
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEM-KKRNIVISPYTYGTVVKGMCSSG 431

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            ++ A  I++ M  +G  PNV  Y +L        + G+A+ + KE+KE+          
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ---------- 481

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI---YVEM 524
                  + PD    ++L     +A    +A   +  M E+G+ PN   Y      Y+E 
Sbjct: 482 ------GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535

Query: 525 HSRMFTSKHASQARQ 539
                  K+  + R+
Sbjct: 536 SEFASADKYVKEMRE 550



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/350 (19%), Positives = 134/350 (38%), Gaps = 45/350 (12%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           ++  L  GY+ +G + + V +  +    E     P       ++ AL++   +D    V 
Sbjct: 153 LFGILFDGYIAKGYIEEAVFVFSSSMGLE---LVPRLSRCKVLLDALLRWNRLDLFWDVY 209

Query: 275 AEMTRIGVPANRITYNILLKGYCQ---------------------QLQIDKAKELLREMA 313
             M    V  +  TY++L+  +C+                      L +D A +L   M 
Sbjct: 210 KGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMI 269

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
               + P   +Y++LIDG   I     A +   EM + G++    +Y+ L+         
Sbjct: 270 CKGLV-PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNA 328

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             A  +  EM+    + +    ++  +    + G++E+AK + + M  +G  P    Y S
Sbjct: 329 DAAKGLVHEMVSHG-INIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKK--------EGVNADSDL-----------PPP 474
           L  G    +   +   L  E+K+R  V          +G+ +  DL              
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            +P+  +   L    ++ + F  A+ ++  M+E GI P+   Y  + + +
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497


>gi|297727589|ref|NP_001176158.1| Os10g0422566 [Oryza sativa Japonica Group]
 gi|255679411|dbj|BAH94886.1| Os10g0422566, partial [Oryza sativa Japonica Group]
          Length = 788

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 141/602 (23%), Positives = 260/602 (43%), Gaps = 67/602 (11%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-----KPDTAAYN 62
           P V AWS +V+ +  +     + +  + ++         DP   S+      KP++  +N
Sbjct: 202 PPVAAWSAIVAHMCQTATGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLLMKPNSLTFN 261

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE- 121
            +L A    G  KK  QL + M   G KPDV +  VM ++  +   +  +  +   + E 
Sbjct: 262 IILTASLLFGTTKKAEQLLELMPRIGLKPDVSSLIVMARIYEQNGHRDEIQKLRRHVNEA 321

Query: 122 --MGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----DVCKIIRE------ 167
             +  +     +  L++ ++ FGDL+ A + I+  +++G+      +  K + E      
Sbjct: 322 CGLSESELRQFYDCLLSCHLKFGDLDSAVDMILDMLKKGKNTKRSLEAAKAVLEAVENNK 381

Query: 168 --LDLEDYSSENEGDDDDD---------------DEVFE----------KLLPNSINPSS 200
             L  E     N G  +                 D+ F           KLL + +    
Sbjct: 382 IYLPYEKTKPVNSGSSNKSVCTDSQMLNYISFFKDKSFARLELDARELLKLLSDKLQ--E 439

Query: 201 EPPLLPKTFA---PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           +  L+   +    P   +Y  L+K ++   ++S     L     +ED+    +      V
Sbjct: 440 QVGLVKSEYGILYPTETMYAKLVKAFLEANKISALASFL-VKASKEDSPVSVESSFVVQV 498

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           ++A +  G +++A  +L EM   G+      Y+ LLK YC++   +     L + A  A 
Sbjct: 499 INACISLGWLEQAHDLLDEMRFSGIRVGSTIYSSLLKAYCKEGHHEDDIAALLKDAQQAG 558

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I+ D   Y  LI      +++ GAL  F E+++  I     +   ++     ++   L  
Sbjct: 559 IQLDPSCYEDLIQSRAHHNNTTGALNLFKELKSLNILKAGQNEFEMLVQGCNNNGAALTT 618

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K+ +E+     V   I  WN ++  +C+  L+ +A + + +MK  G  PN  T+ SL  G
Sbjct: 619 KLVEEVRSGHPVNHAIHDWNNVIHFFCKKRLMHDAHKALGKMKALGHTPNAQTFHSLVTG 678

Query: 438 I-SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
             ++  K  E   LW E+K         V A S     +  D+ELLD+L    VR  FF 
Sbjct: 679 YAAVGGKYVEVTDLWGEMK---------VLATSS---SMNFDQELLDSLLYCFVRGGFFL 726

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWL 556
           +A+E++  ME+  +  +K KYK ++++ H  ++  K A + + + + +R+ AA  FK W+
Sbjct: 727 RAMEVIEMMEKGKMFIDKYKYKSLWLKYHRTLYKGK-APKVQTEAQLKRREAALHFKRWI 785

Query: 557 GL 558
           GL
Sbjct: 786 GL 787


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 207/466 (44%), Gaps = 35/466 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P   + N +LN     G P     ++ QM   G  PD  T  +M K   R  R    V 
Sbjct: 180 RPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVE 239

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            +E +  MG+ + +  + +++  Y G G  E A  I+++++        +   L ++ Y 
Sbjct: 240 FVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYC 299

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +  G  ++ + V +++                    +   Y  ++ GY   GR+ D  R
Sbjct: 300 KD--GRMEEAERVVKEMKETG------------DIVVDEVAYGMMINGYCQRGRMDDATR 345

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   MR   D   H +   Y T+++ L K G M+  ++VL EM  +G+  ++ +YN L+ 
Sbjct: 346 VRNEMR---DAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++  + KA E+ R M  +  +    ++YN L+ GF  +     AL  +  M  RG+A
Sbjct: 403 GYCREGSMRKAFEMCRMMVRNG-LAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVA 461

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P +IS +TL+     + + + A  ++ E L     K +++ +N ++ G C++G + EA+ 
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAK-NVITFNTVINGLCKIGRMAEAEE 520

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +++RMKE    P+  TY +L +G     + G A  L  +++                   
Sbjct: 521 LLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHL----------------G 564

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             P  E+ ++       A  + K  +I + M   G+ PN   Y  +
Sbjct: 565 FAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGAL 610



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 198/462 (42%), Gaps = 44/462 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVVK---RVRK 44
           ML+ G  P+  + ST++  L  +G               G  ++V  F+ V+    ++ +
Sbjct: 455 MLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGR 514

Query: 45  FSDPDIVSD------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            ++ + + D        PD+  Y  + +    LG+      L ++M   G  P V  +N 
Sbjct: 515 MAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNS 574

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG 157
            I     A + H +  +   +   G++  + T+ +L+A +   G+L E      + +  G
Sbjct: 575 FITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNG 634

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP--------KTF 209
                 I   L    Y    EG  D+ + V +KL+   + P      +          T 
Sbjct: 635 MNPNVFICSALMSCFYK---EGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTI 691

Query: 210 A---PNSR--IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           A   P+S   ++  ++ G    GR++D   +  ++R +      PD+ TY++++     +
Sbjct: 692 ADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKR---FLPDNFTYSSLIHGCAAS 748

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           GS+D A  +   M   G+  N ITYN L+ G C+  ++ +A  L  ++     I P+ ++
Sbjct: 749 GSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKG-ISPNGIT 807

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN LID +     +  A     +M   GI PT I+Y+ L+         + A K+ D+M+
Sbjct: 808 YNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMI 867

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
            +  V  + + +  L+ GY + G +EE  ++ + M   G  P
Sbjct: 868 EN-NVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 908



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 166/351 (47%), Gaps = 32/351 (9%)

Query: 190 KLLPNSINPSSEPPLLP------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
           + L +S+ P +EP L P      + F  ++  +  L++ + + G++S  + +   M +  
Sbjct: 120 RALLSSLPPHAEP-LFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKV- 177

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P   +   +++ LV++G    A  V  +M   GV  +  T  I+ K YC+  ++ 
Sbjct: 178 --GCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVA 235

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A E + EM +   +E ++V+Y+ ++D +  +  +  A      ++ +G++P  ++YT L
Sbjct: 236 QAVEFVEEM-EGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLL 294

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +K +    + + A +V  EM     + VD VA+ M++ GYC+ G +++A R+   M++ G
Sbjct: 295 VKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAG 354

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
            + N+  Y ++ NG+    K G    + K ++E  +V              ++PD+   +
Sbjct: 355 IHVNLFVYNTMINGLC---KLGRMEEVQKVLQEMEDVG-------------MRPDKYSYN 398

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
            L D   R    RKA E+   M  +G+      Y  +      + F S HA
Sbjct: 399 TLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLL-----KGFCSLHA 444



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 185/419 (44%), Gaps = 26/419 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +  AY+AV++    +G  +   ++ + +   G  P+V+TY +++K   +  R      V+
Sbjct: 252 NLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVV 311

Query: 117 ERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV------------CK 163
           + + E G I +    +  ++  Y   G ++ A  +   MR+    V            CK
Sbjct: 312 KEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK 371

Query: 164 IIRELDLEDYSSENEGDDDDDDEV-FEKLLPNSINPSSEPP-------LLPKTFAPNSRI 215
           + R  +++    E E      D+  +  L+       S          ++    A  +  
Sbjct: 372 LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLT 431

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+KG+ +   + D +R+   M ++      P+ ++ +T++  L KAG  ++A  +  
Sbjct: 432 YNTLLKGFCSLHAIDDALRLWFLMLKR---GVAPNEISCSTLLDGLFKAGKTEQALNLWK 488

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           E    G+  N IT+N ++ G C+  ++ +A+ELL  M  + +  PD ++Y  L DG+  +
Sbjct: 489 ETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRM-KELRCPPDSLTYRTLFDGYCKL 547

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A    N+M   G AP+   + + +    ++ Q    N +  EM     +  ++V 
Sbjct: 548 GQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEM-SARGLSPNLVT 606

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +  L+ G+C+ G + EA  +   M  NG  PNV    +L +      K  EA L+ +++
Sbjct: 607 YGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL 665



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L     PN   Y +L+ G    G++S  V +   ++ +      P+ +TY T++    K
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK---GISPNGITYNTLIDEYCK 817

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G    A ++  +M   G+    ITY+IL+ G C Q  +++A +LL +M ++  ++P+ +
Sbjct: 818 EGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIEN-NVDPNYI 876

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +Y  LI G+I   +       ++EM  RG+ PT 
Sbjct: 877 TYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTN 910


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 222/506 (43%), Gaps = 47/506 (9%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T +YN +L A    G+ K   QLFD+M    + PDV+TY +M+      S     + +L
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +   G+ L    + S++A     G +  A  +V+       D+      LD   +++ 
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVE-------DMVMHGVVLDAAVFTTV 361

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G     D      L  + N   E  +  +  A +   YT L+ G    G + +  R+L
Sbjct: 362 MSGFCRKGD------LAAARNWFDE--MQKRGLAADGVTYTALINGLCRAGELKEAERVL 413

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M   ED     D VTYT ++    K G M  A  V  +M +  V  N +TY  L  G 
Sbjct: 414 QEM---EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+Q  +  A ELL EM     +E ++ +YN LI+G     +   A+    +M   G+ P 
Sbjct: 471 CKQGDVCAANELLHEMCSKG-LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +YTT++ A   S +   A+ +  EML D  +K  IV +N+L+ G+C  G VE  KR++
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           E M E   +PN  TY SL     +           K +K   E+ K  ++ +      + 
Sbjct: 589 EWMLEKNIHPNTTTYNSLMKQYCIE----------KNMKSTTEIYKGMLSQE------VV 632

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
           P+E   + L     +A   ++AL   + M E G     + Y  +   ++ +    K  ++
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKK----KKFTE 688

Query: 537 AR---QDRRRERKRA-AEAFKFWLGL 558
           AR   +  R+ER  A  + + F++ L
Sbjct: 689 ARRLFEKMRKERLTAEPDVYNFYIDL 714



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A Q+  E+       N  +YNILLK  C   +I  A +L  EMA      PDVV+Y 
Sbjct: 238 LDEAVQLFQELPE----KNTCSYNILLKALCTAGRIKDAHQLFDEMAS----PPDVVTYG 289

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           I++ G+  + +   A+   +EM ARG+    ++YT+++       Q   A +V ++M+  
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V +D   +  ++ G+CR G +  A+   + M++ G   +  TY +L NG+  A +  E
Sbjct: 350 G-VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKE 408

Query: 447 ALLLWKEIKER 457
           A  + +E++++
Sbjct: 409 AERVLQEMEDK 419



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 21/294 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y A+ +     G      +L  +M   G + ++ TYN +I    +A      +  
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  + E G+   + T+ +++ A     +L+ A +++Q M +       +   + +  +  
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +    + E +L  +I+             PN+  Y +LMK Y  E  +  T  +
Sbjct: 578 --SGRVEGGKRLLEWMLEKNIH-------------PNTTTYNSLMKQYCIEKNMKSTTEI 622

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  QE     P+  TY  ++    KA +M  A    +EM   G      +YN L++ 
Sbjct: 623 YKGMLSQE---VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRL 679

Query: 296 YCQQLQIDKAKELLREMADD-AKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             ++ +  +A+ L  +M  +    EPDV  YN  ID     D+    L   +E+
Sbjct: 680 LNKKKKFTEARRLFEKMRKERLTAEPDV--YNFYIDLSFNEDNLESTLALCDEL 731



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y  ++ A     +  +   L  +M + G KP ++TYNV++     + R      
Sbjct: 527 KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +LE +LE  I    TT+ SL+  Y    +++    I + M
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM 626


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/486 (24%), Positives = 219/486 (45%), Gaps = 44/486 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVK---RVRK 44
           + R+G  P V  ++ ++  L  SG               G   SV  F +++    R  +
Sbjct: 37  LWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGER 96

Query: 45  FSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           F +  IV          P+   YN ++      G   + L+LFD+M     KP  +TYN+
Sbjct: 97  FGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNL 156

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD-LE-----IAETIVQ 152
           + K   +         +LE +L +G+T+    F ++VA  +     LE       E + +
Sbjct: 157 IAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTR 216

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNS--INPSSE--PPLLPKT 208
            MR     +   +REL          G   +   ++ K L     +  +++    +L K 
Sbjct: 217 GMRPNDPLMTACMRELC-------KGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKG 269

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              +S  Y  +++G   + ++ + +++ G M R+      PD  T+ T++ A    G M+
Sbjct: 270 IELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRR---GFKPDLFTFNTLLHAYCNLGKME 326

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
               +L +M   G+  + ++Y  ++ G+C+   I KAKE L E+ D   ++P+V  YN L
Sbjct: 327 ETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRG-LKPNVFIYNAL 385

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G+    D +GA+     M++ GI PT ++Y +LM     +   + A  +F +  R+  
Sbjct: 386 IGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQA-RENN 444

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V + ++ + ++++GYC++G + EA    E M+  G  PN  TY +L    S +    EA 
Sbjct: 445 VDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEAS 504

Query: 449 LLWKEI 454
            L+ E+
Sbjct: 505 KLFDEM 510



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 171/396 (43%), Gaps = 73/396 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESV-KLFDVVVKRVRKFSDP-------DIVS 52
           ML  G   H   ++TVV+ L        +ESV  + + +V R  + +DP       ++  
Sbjct: 177 MLSIGMTVHCGLFNTVVAWLLQRTRR--LESVVSITNEMVTRGMRPNDPLMTACMRELCK 234

Query: 53  DSKPDTAAYNAVLNACANLGK-PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
             K   A    +     N GK  K+  ++   M   G + D +TYN+MI+ C + S+   
Sbjct: 235 GGKHQEAV--GIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEE 292

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDL 170
            + +   +   G    + TF +L+ AY   G +E    ++  M+ EG +         D+
Sbjct: 293 AIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQP--------DI 344

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGR 228
             Y +  +G     D          I  + E    L+ +   PN  IY  L+ GY   GR
Sbjct: 345 VSYGTIIDGHCKAKD----------IRKAKEYLTELMDRGLKPNVFIYNALIGGY---GR 391

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
             D    + A+   + N   P +VTY +++  +  AG ++ A+ + ++     V    I 
Sbjct: 392 NGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIG 451

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y I+++GYC+          L +M +                          A+ +F EM
Sbjct: 452 YTIMIQGYCK----------LGKMVE--------------------------AVAYFEEM 475

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           R+RGI+P K++YTTLM A++ S   + A+K+FDEM+
Sbjct: 476 RSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMV 511



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 108/507 (21%), Positives = 204/507 (40%), Gaps = 102/507 (20%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           +Y A++ A    GK     ++  ++   G +P V+TYNV++    ++ R      +  R+
Sbjct: 13  SYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRM 72

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSEN 177
            + G+T  + TF  L+                  +  G R  +V  +++E+         
Sbjct: 73  EQGGMTPSVVTFGILI----------------NGLARGERFGEVGIVLQEM--------- 107

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                      E+L                  +PN  IY  L+  +  +G  S  +R+  
Sbjct: 108 -----------EQL----------------GVSPNEVIYNELIGWHCRKGHCSQALRLFD 140

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M  ++     P  VTY  +  AL K G M+RA ++L +M  IG+  +   +N ++    
Sbjct: 141 EMVLKK---MKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLL 197

Query: 298 QQLQ-----IDKAKEL---------------LREMADDAKIEPDV-VSYNILIDGFILID 336
           Q+ +     +    E+               +RE+    K +  V + +  L  G  + +
Sbjct: 198 QRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKE 257

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
            +    T  N    +GI    I+Y  +++     S+ + A K+  +M R    K D+  +
Sbjct: 258 ATKVIQTMLN----KGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRG-FKPDLFTF 312

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N L+  YC +G +EE   ++++MK  G  P++ +YG++ +G   A+   +A     E+ +
Sbjct: 313 NTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMD 372

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           R                 LKP+  + +AL     R      A++ V  M+ +GI P    
Sbjct: 373 R----------------GLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVT 416

Query: 517 YKKI-YVEMHSRMFTSKHA--SQARQD 540
           Y  + Y   H+ +        SQAR++
Sbjct: 417 YGSLMYWMCHAGLVEEAKTIFSQAREN 443



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 64/107 (59%), Gaps = 1/107 (0%)

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           +R +A  + SYT ++KA   + +     ++  E+ R   ++  +V +N+L++  C+ G V
Sbjct: 4   SRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWR-AGLQPTVVTYNVLMDALCKSGRV 62

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           EEA R+  RM++ G  P+V T+G L NG++   + GE  ++ +E+++
Sbjct: 63  EEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQ 109


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 226/538 (42%), Gaps = 81/538 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   ++  +NA    GK +  +QLF  M + G  P+V+TYN +I  LC   +      F
Sbjct: 244 PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRF 303

Query: 115 ----------------------------------VLERILEMGITLCMTTFQSLVAAYVG 140
                                             VL+  LE G T     + +L+  Y  
Sbjct: 304 KEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCK 363

Query: 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPN--SINP 198
            G+L  A  I   M     +   +     ++ +     G  +  + + E++L    SINP
Sbjct: 364 MGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKI--GQMEQAECILEEMLSRGFSINP 421

Query: 199 SSEPP--------------------LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            +                       +L +   PN  + TTL+ G   EG+ SD V +   
Sbjct: 422 GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVEL--- 478

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
             R  +     + VT   ++  L K G+M  A ++L +M   G   ++ITYN L+ G C+
Sbjct: 479 WFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCK 538

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++++  +L  EM     IEPD  +YN+LI G   I     A+  +NE ++R + P   
Sbjct: 539 EGKVEEGFKLRGEMVKQG-IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVY 597

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y  ++  +  + + +   K+F E+L    ++++ V +N L+  YCR G   EA ++ + 
Sbjct: 598 TYGVMIDGYCKADKIEEGEKLFTELLTQ-NLELNSVVYNTLIRAYCRNGNTVEAFKLHDD 656

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M+  G  P  ATY SL +G+    +  +A  L  E+      +KEG          L P+
Sbjct: 657 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM------RKEG----------LLPN 700

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
                AL     +     K + ++  M  + I PNK  Y  + ++ +S+    K A++
Sbjct: 701 VVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY-TVMIDGYSKSGDMKTAAK 757



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 160/377 (42%), Gaps = 57/377 (15%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           NA+++     G  ++ ++L  +M E G   D +TYN +I  C +  +      +   +++
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG-D 180
            GI     T+  L+      G L+ A  +    +   RD+       ++  Y    +G  
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKS--RDLVP-----NVYTYGVMIDGYC 607

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D  E  EKL            LL +    NS +Y TL++ Y   G   +  ++   MR
Sbjct: 608 KADKIEEGEKLFTE---------LLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR 658

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P   TY++++  +   G M+ A+ ++ EM + G+  N + Y  L+ GYC+  
Sbjct: 659 SK---GIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLG 715

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q+DK   +L+EM+    I P+ ++Y ++IDG+    D   A    +EM  +GI P  ++Y
Sbjct: 716 QMDKVVNVLQEMS-SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 774

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
                                               N+L  G+C+ G +EE  +I + M 
Sbjct: 775 ------------------------------------NVLTNGFCKEGKIEEGFKICDYMS 798

Query: 421 ENGFYPNVATYGSLANG 437
           + G   +  TY +L +G
Sbjct: 799 QEGLPLDEITYTTLVHG 815



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 108/505 (21%), Positives = 191/505 (37%), Gaps = 82/505 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P       +L++     + +K   +F+ M + G  PDV  ++  I    +  +    + +
Sbjct: 210 PTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQL 268

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE------LD 169
              + ++G++  + T+ +L+      G+L+ A    + M +   +   I         + 
Sbjct: 269 FFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMK 328

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           LE ++  N                     S     L K F PN  +Y TL+ GY   G +
Sbjct: 329 LEKFNEAN---------------------SVLKETLEKGFTPNEVVYNTLIDGYCKMGNL 367

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D +R+ G M  +  N   P+ VT  +++    K G M++A  +L EM   G   N   +
Sbjct: 368 GDALRIRGDMVSKGIN---PNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAF 424

Query: 290 NILLKGYCQQLQIDKAKELLREM------------------------ADDA--------- 316
             ++   C   + + A   LREM                          DA         
Sbjct: 425 TTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE 484

Query: 317 -KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
                ++V+ N LI G     +   A+    +M  RG    KI+Y TL+       + + 
Sbjct: 485 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEE 544

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
             K+  EM++   ++ D   +N+L+ G CR+G ++EA  +    K     PNV TYG + 
Sbjct: 545 GFKLRGEMVKQ-GIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 603

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           +G   A K  E   L+ E+                L   L+ +  + + L     R    
Sbjct: 604 DGYCKADKIEEGEKLFTEL----------------LTQNLELNSVVYNTLIRAYCRNGNT 647

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            +A ++   M   GIPP    Y  +
Sbjct: 648 VEAFKLHDDMRSKGIPPTTATYSSL 672



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 123/254 (48%), Gaps = 6/254 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L  K   P  +  T L+   +    +  +  +   MR+       PD   ++T ++A  K
Sbjct: 203 LANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ----GVSPDVYLFSTAINAFCK 258

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G ++ A Q+  +M ++GV  N +TYN L+ G C+   +D+A     +M  D  +   ++
Sbjct: 259 GGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDG-VNATLI 317

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y++LI+G + ++    A +   E   +G  P ++ Y TL+  +        A ++  +M
Sbjct: 318 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 377

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +    +  + V  N +++G+C++G +E+A+ I+E M   GF  N   + ++ + + +  +
Sbjct: 378 VSK-GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSR 436

Query: 444 PGEALLLWKEIKER 457
              AL   +E+  R
Sbjct: 437 FESALRFLREMLLR 450



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 151/376 (40%), Gaps = 71/376 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G++     ++T++S     G     E  KL   +VK+             +PDT  
Sbjct: 517 MLERGFVLDKITYNTLISGCCKEGK--VEEGFKLRGEMVKQ-----------GIEPDTFT 563

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++    +GK  + + L+++       P+V TY VMI    +A +      +   +L
Sbjct: 564 YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELL 623

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              + L    + +L+ AY   G+   A  +   MR                         
Sbjct: 624 TQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRS------------------------ 659

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K   P +  Y++L+ G  N GR+ D   ++  MR
Sbjct: 660 --------------------------KGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR 693

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      P+ V YT ++    K G MD+   VL EM+   +  N+ITY +++ GY +  
Sbjct: 694 KE---GLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSG 750

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +  A +LL EM     I PD V+YN+L +GF             + M   G+   +I+Y
Sbjct: 751 DMKTAAKLLHEMVGKG-IVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITY 809

Query: 361 TTLMKAF----ALSSQ 372
           TTL+  +    AL++Q
Sbjct: 810 TTLVHGWQQPSALTNQ 825



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 24/250 (9%)

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQ---IDKAKELLREMADDAKIEPDVVSYNILID 330
           L E+   GV    +  ++L+  YC Q +      A  + R +A+   + P V +   L+ 
Sbjct: 164 LNEVGESGVAVAAV--DLLIHVYCTQFRNVGFRNAIGVFRFLANKG-VFPTVKTCTFLLS 220

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
             +  ++   +   F  MR +G++P    ++T + AF    + + A ++F +M     V 
Sbjct: 221 SLVKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDM-EKLGVS 278

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++V +N L+ G C+ G ++EA R  E+M ++G    + TY  L NG+    K  EA  +
Sbjct: 279 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSV 338

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            KE  E+                   P+E + + L D   +      AL I   M   GI
Sbjct: 339 LKETLEK----------------GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGI 382

Query: 511 PPNKTKYKKI 520
            PN      I
Sbjct: 383 NPNSVTLNSI 392


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 214/455 (47%), Gaps = 31/455 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+V +++ ++  L    ++   E+++L  ++         PD   D  PD  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLC--DENRSQEALELLQMM---------PDDGGDCPPDVVS 201

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  V+N     G   K    + +M + G  P+V+TY+ +I    +A      + VL  ++
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S+V  Y   G  + A   ++ M     +   ++    L DY  +N G 
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP-DVVTYNSLMDYLCKN-GR 319

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F+ +    + P                 Y TL++GY  +G + +   +L  M 
Sbjct: 320 CTEARKMFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMHGLLDLMV 366

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N  HP+H  ++ ++ A  K G +D+A  V ++M + G+  + +TY  ++   C+  
Sbjct: 367 R---NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ A     +M D+ ++ P  + YN LI    + D    A     EM  RGI    I +
Sbjct: 424 RVEDAMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFF 482

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++ +     +   + K+FD M+R   VK DI+ ++ L++GYC  G ++EA +++  M 
Sbjct: 483 NSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             G  P+  TY +L NG     +  +AL+L++E++
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREME 576



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 202/457 (44%), Gaps = 70/457 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G LP+V  +S++++ L  A   D      K  +V+   V+        +   P+  
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMD------KAMEVLTSMVK--------NGVMPNCR 270

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++   + G+PK+ +    +MH  G +PDV+TYN ++    +  R      + + +
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+   +TT+ +L+  Y   G L                               E  G
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGAL------------------------------VEMHG 360

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                  + + ++ N I+P             N  +++ L+  Y  +G+V   + +   M
Sbjct: 361 -------LLDLMVRNGIHP-------------NHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R+Q  N   PD VTY TV+  L K+G ++ A +   +M    +    I YN L+   C  
Sbjct: 401 RQQGLN---PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            + DKAKEL+ EM D   I  D + +N +ID          +   F+ M   G+ P  I+
Sbjct: 458 DKWDKAKELILEMLDRG-ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 516

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+TL+  + L+ +   A K+   M+    +K D V +N L+ GYC++  +E+A  +   M
Sbjct: 517 YSTLIDGYCLAGKMDEATKLLASMV-SVGMKPDCVTYNTLINGYCKISRMEDALVLFREM 575

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + +G  P++ TY  +  G+   R+   A  L+  I E
Sbjct: 576 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITE 612



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/466 (21%), Positives = 212/466 (45%), Gaps = 54/466 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++G +P+ + ++++V    +SG   P E++          +K     +    +PD   
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQ--PKEAIGFL-------KKMHSDGV----EPDVVT 306

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G+  +  ++FD M + G KP++ TY  +++  A       +  +L+ ++
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             GI      F  L+ AY   G ++ A  +   MR+   +        D   Y +     
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP-------DTVTYGTVIGIL 419

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNS 213
              G  +D    FE+++   ++P +                         +L +    ++
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDT 479

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             + +++  +  EGRV ++ ++   M R       PD +TY+T++     AG MD A ++
Sbjct: 480 IFFNSIIDSHCKEGRVIESEKLFDLMVRI---GVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA M  +G+  + +TYN L+ GYC+  +++ A  L REM + + + PD+++YNI++ G  
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESSGVSPDIITYNIILQGLF 595

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVD 392
               +A A   +  +   G      +Y  ++     ++    A ++F  + L D  ++++
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD--LQLE 653

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
              +N+++    ++G  +EAK +   +  NG  P+V TY  +A  +
Sbjct: 654 TRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 130/259 (50%), Gaps = 9/259 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y  L+KG  +E R  + + +L  M   +     PD V+YTTV++   K G +D+A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELL-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                EM   G+  N +TY+ ++   C+   +DKA E+L  M  +  + P+  +YN ++ 
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG-VMPNCRTYNSIVH 277

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+        A+ F  +M + G+ P  ++Y +LM     + +   A K+FD M +   +K
Sbjct: 278 GYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG-LK 336

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +I  +  L++GY   G + E   +++ M  NG +PN   +  L    +   K  +A+L+
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLV 396

Query: 451 WKEIKERCEVKKEGVNADS 469
           + ++++      +G+N D+
Sbjct: 397 FSKMRQ------QGLNPDT 409



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 208/504 (41%), Gaps = 74/504 (14%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P++ TY ++I  C  A R  L    L  +++ G  +    
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+       D   ++ +   +R   +  C  I  +   +   +   D++   E  E 
Sbjct: 129 FTPLLKGLCA--DKRTSDAMDIVLRRMTQLGC--IPNVFSYNILLKGLCDENRSQEALE- 183

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           LL    +   + P       P+   YTT++ G+  EG   D  +  G      D    P+
Sbjct: 184 LLQMMPDDGGDCP-------PDVVSYTTVINGFFKEG---DLDKAYGTYHEMLDRGILPN 233

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY+++++AL KA +MD+A +VL  M + GV  N  TYN ++ GYC   Q  +A   L+
Sbjct: 234 VVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL- 369
           +M  D  +EPDVV+YN L+D          A   F+ M  RG+ P   +Y TL++ +A  
Sbjct: 294 KMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 370 --------------------------------SSQPKL--ANKVFDEMLRDPRVKVDIVA 395
                                           + Q K+  A  VF +M R   +  D V 
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM-RQQGLNPDTVT 411

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  ++   C+ G VE+A R  E+M +    P    Y SL + + +  K  +A  L  E+ 
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 456 ER--C-----------EVKKEGVNADSD------LPPPLKPDEELLDALADICVRAAFFR 496
           +R  C              KEG   +S+      +   +KPD      L D    A    
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
           +A +++A M   G+ P+   Y  +
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 129/299 (43%), Gaps = 30/299 (10%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R   +   P+  TY  ++ +   AG +D     L  + + G   + I +  LLKG C 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 299 QLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAP 355
             +   A ++ LR M     I P+V SYNIL+ G    + S  AL     M   G    P
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPP 197

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SYTT++  F        A   + EML D  +  ++V ++ ++   C+   +++A  +
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEML-DRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M +NG  PN  TY S+ +G   + +P EA+   K++        +GV          
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS------DGV---------- 300

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------KKIYVEMH 525
           +PD    ++L D   +     +A ++   M + G+ P  T Y         K   VEMH
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 217/463 (46%), Gaps = 42/463 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A ++ +L+A + + K    + L++QM   G   ++ T N+++    R S+  L +  
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + TF SL+  +     +  A  +   M E   +   +I    ++    
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             + D+  D  +  ++  + I              P++  Y +L+ G  N GR  D  RM
Sbjct: 199 SKQVDNALD--LLNRMEVDGIR-------------PDAVTYNSLISGLCNSGRWDDATRM 243

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M ++E    +PD  T+  ++ A VK G +  A ++  EM R  +  + +TY++L+ G
Sbjct: 244 VSCMTKRE---IYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   ++D+A+++   M       PDVV+Y+ILI+G+         +  F EM  RG+  
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCF-PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YT L++ +  + +  +A ++F  M+    V  +I+ +N+L+ G C  G +E+A  I
Sbjct: 360 NTVTYTVLIQGYCRAGKLNVAEEIFKWMVF-CGVPPNIITYNVLLHGLCDNGKIEKALVI 418

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M+++G   ++ TY  +  G+  A +  +A  L+      C +  +G      L P +
Sbjct: 419 LADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLY------CSLNLKG------LTPDI 466

Query: 476 KPDEELLDALADICVRA---AFFRKALEIVACMEEHGIPPNKT 515
                ++  L    +R    A FRK       M+E GI PN+ 
Sbjct: 467 WTYTAMMLGLYKKGLRGEADALFRK-------MKEDGILPNEC 502



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 191/391 (48%), Gaps = 26/391 (6%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L LF  M +    P +  ++ ++   ++  +  +++++ E++  +GI   + T   L+  
Sbjct: 66  LDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNC 125

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
           +     L +A + +  M        K+  E D+  + S   G    D  +++ L      
Sbjct: 126 FCRCSQLSLALSFLGKMM-------KLGHEPDIVTFGSLLNGFCRGD-RIYDALYMFD-- 175

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                 ++   + PN  IY T++ G     +V + + +L    R E +   PD VTY ++
Sbjct: 176 -----RMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLL---NRMEVDGIRPDAVTYNSL 227

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           +S L  +G  D A ++++ MT+  +  +  T+N L+    ++ +I +A+EL  EM   + 
Sbjct: 228 ISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRS- 286

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           ++PD+V+Y++LI G  +      A   F  M ++G  P  ++Y+ L+  +  S + +   
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K+F EM +   V+ + V + +L++GYCR G +  A+ I + M   G  PN+ TY  L +G
Sbjct: 347 KLFCEMSQRGVVR-NTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHG 405

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           +    K  +AL++  ++      +K G++AD
Sbjct: 406 LCDNGKIEKALVILADM------QKSGMDAD 430



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 178/375 (47%), Gaps = 24/375 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   + ++LN      +    L +FD+M E G +P+V+ YN +I    ++ +    + 
Sbjct: 148 EPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALD 207

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLED 172
           +L R+   GI     T+ SL++     G  + A  +V  M  RE   DV      +D   
Sbjct: 208 LLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALID--- 264

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
            +   EG   + +E++E+++  S++P             +   Y+ L+ G     R+ + 
Sbjct: 265 -ACVKEGRISEAEELYEEMIRRSLDP-------------DIVTYSLLIYGLCMYSRLDEA 310

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +M G M  +      PD VTY+ +++   K+  ++   ++  EM++ GV  N +TY +L
Sbjct: 311 EQMFGFMVSK---GCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVL 367

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           ++GYC+  +++ A+E+ + M     + P++++YN+L+ G         AL    +M+  G
Sbjct: 368 IQGYCRAGKLNVAEEIFKWMVF-CGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSG 426

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +    ++Y  +++    + +   A  ++   L    +  DI  +  ++ G  + GL  EA
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDLYCS-LNLKGLTPDIWTYTAMMLGLYKKGLRGEA 485

Query: 413 KRIIERMKENGFYPN 427
             +  +MKE+G  PN
Sbjct: 486 DALFRKMKEDGILPN 500



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 27/303 (8%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+  +    ++S  +  LG M +       PD VT+ ++++   +   +  A  +   M 
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKL---GHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMV 178

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
            +G   N + YN ++ G C+  Q+D A +LL  M  D  I PD V+YN LI G       
Sbjct: 179 EMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDG-IRPDAVTYNSLISGLCNSGRW 237

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVA 395
             A    + M  R I P   ++  L+ A     +   A ++++EM+R   DP    DIV 
Sbjct: 238 DDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDP----DIVT 293

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +++L+ G C    ++EA+++   M   G +P+V TY  L NG   ++K    + L+    
Sbjct: 294 YSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF---- 349

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
             CE+ + GV  ++     L         +   C RA     A EI   M   G+PPN  
Sbjct: 350 --CEMSQRGVVRNTVTYTVL---------IQGYC-RAGKLNVAEEIFKWMVFCGVPPNII 397

Query: 516 KYK 518
            Y 
Sbjct: 398 TYN 400


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 216/482 (44%), Gaps = 80/482 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A ++ +L+A + + K    + L++QM   G   ++ T N+++    R S+  L +  
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 116 LERILEMGITLCMTTFQSLVAAY----------------VGFG---DLEIAETIVQAMRE 156
           L +++++G    + TF SL+  +                VG G   ++ I  TI+  + +
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
            +    ++   LDL +   E +G                               P+   Y
Sbjct: 199 SK----QVDNALDLLN-RMEKDG-----------------------------IGPDVVTY 224

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            +L+ G  + GR SD  RM+  M ++E    +PD  T+  ++ A VK G +  A +   E
Sbjct: 225 NSLISGLCSSGRWSDATRMVSCMTKRE---IYPDVFTFNALIDACVKEGRVSEAEEFYEE 281

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R  +  + +TY++L+ G C   ++D+A+E+   M       PDVV+Y+ILI+G+    
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF-PDVVTYSILINGYCKSK 340

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
                +  F EM  RG+    ++YT L++ +  + +  +A ++F  M+    V  +I+ +
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVF-CGVHPNIITY 399

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N+L+ G C  G +E+A  I+  M++NG   ++ TY  +  G+    K GE    W     
Sbjct: 400 NVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMC---KAGEVADAW---DI 453

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA---AFFRKALEIVACMEEHGIPPN 513
            C +  +G      L P +     ++  L    +R    A FRK       M+E GI PN
Sbjct: 454 YCSLNCQG------LMPDIWTYTTMMLGLYKKGLRREADALFRK-------MKEDGILPN 500

Query: 514 KT 515
           + 
Sbjct: 501 EC 502



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 175/375 (46%), Gaps = 24/375 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    + ++LN      +    L +FDQM   G KP+V+ YN +I    ++ +    + 
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALD 207

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLED 172
           +L R+ + GI   + T+ SL++     G    A  +V  M  RE   DV      +D   
Sbjct: 208 LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALID--- 264

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
            +   EG   + +E +E+++  S++P             +   Y+ L+ G     R+ + 
Sbjct: 265 -ACVKEGRVSEAEEFYEEMIRRSLDP-------------DIVTYSLLIYGLCMYSRLDEA 310

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             M G M  +      PD VTY+ +++   K+  ++   ++  EM++ GV  N +TY IL
Sbjct: 311 EEMFGFMVSK---GCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTIL 367

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           ++GYC+  +++ A+E+ R M     + P++++YN+L+ G         AL    +M+  G
Sbjct: 368 IQGYCRAGKLNVAEEIFRRMV-FCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNG 426

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +    ++Y  +++    + +   A  ++   L    +  DI  +  ++ G  + GL  EA
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCS-LNCQGLMPDIWTYTTMMLGLYKKGLRREA 485

Query: 413 KRIIERMKENGFYPN 427
             +  +MKE+G  PN
Sbjct: 486 DALFRKMKEDGILPN 500



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 153/386 (39%), Gaps = 67/386 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  GY P+V  ++T++  L  S         K  D  +  + +     I     PD   
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKS---------KQVDNALDLLNRMEKDGI----GPDVVT 223

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++   + G+     ++   M +    PDV T+N +I  C +  R        E ++
Sbjct: 224 YNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              +   + T+  L+     +  L+ AE +   M                          
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM-------------------------- 317

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   + K   P+   Y+ L+ GY    +V   +++   M 
Sbjct: 318 ------------------------VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++       + VTYT ++    +AG ++ A ++   M   GV  N ITYN+LL G C   
Sbjct: 354 QR---GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNG 410

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I+KA  +L +M  +  ++ D+V+YNI+I G     + A A   +  +  +G+ P   +Y
Sbjct: 411 KIEKALVILADMQKNG-MDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRD 386
           TT+M         + A+ +F +M  D
Sbjct: 470 TTMMLGLYKKGLRREADALFRKMKED 495



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 19/213 (8%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I  ++ + NIL++ F      + AL+F  +M   G  P+ +++ +L+  F    +   A 
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDAL 171

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +FD+M+     K ++V +N +++G C+   V+ A  ++ RM+++G  P+V TY SL +G
Sbjct: 172 YMFDQMV-GMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG 230

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +  + +  +A  +       C  K+E           + PD    +AL D CV+     +
Sbjct: 231 LCSSGRWSDATRMVS-----CMTKRE-----------IYPDVFTFNALIDACVKEGRVSE 274

Query: 498 ALEIVACMEEHGIPPNKTKYK-KIY-VEMHSRM 528
           A E    M    + P+   Y   IY + M+SR+
Sbjct: 275 AEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRL 307



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 87/191 (45%), Gaps = 24/191 (12%)

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPRV 389
           F+ +DDS     FF+ ++ R + P+   ++ L+ A +   +  +   ++++M  L  P  
Sbjct: 59  FMKLDDSLD--LFFHMVQCRPL-PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPH- 114

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             ++   N+L+  +CR   +  A   + +M + G  P++ T+GSL NG     +  +AL 
Sbjct: 115 --NLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALY 172

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           ++                D  +    KP+  + + + D   ++     AL+++  ME+ G
Sbjct: 173 MF----------------DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG 216

Query: 510 IPPNKTKYKKI 520
           I P+   Y  +
Sbjct: 217 IGPDVVTYNSL 227


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/493 (22%), Positives = 216/493 (43%), Gaps = 59/493 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  +N ++ A    G+    L +FD M   G  P V+TY++++    +AS     + +
Sbjct: 160 PDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVL 219

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCK 163
           L+ +   G    + T+  L+ A    GD++ A  I+  +                + +C 
Sbjct: 220 LDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCG 279

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNS-------------INPSSEPPLLPKTFA 210
             R  ++E+  +E   +    DEV    +  S             ++  SE   +P    
Sbjct: 280 SERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVT 339

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
                Y++++ G  + GRV D V +L    R +     PD + YTTV+  L      + A
Sbjct: 340 -----YSSILDGLCDVGRVDDAVELLS---RLKSYGCKPDTIAYTTVLKGLCSIEQWEHA 391

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++AEM     P + +T+N ++   CQ+  +D+A +++ +M+++    PD+V+YN +ID
Sbjct: 392 EELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENG-CNPDIVTYNSIID 450

Query: 331 GFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           G      IDD   A+   + +++ G  P  +++ TL+K      + + A ++   M+   
Sbjct: 451 GLCNERCIDD---AMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHS- 506

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               D   +N ++   C+ GL+ +A   ++ M ENG  PN +TY  + + +  A K  EA
Sbjct: 507 DCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEA 566

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           L L   +                      PD    + +     +A    +AL+++  M  
Sbjct: 567 LKLLSGMTNG------------------TPDLITYNTVISNITKAGKMEEALDLLRVMVS 608

Query: 508 HGIPPNKTKYKKI 520
           +G+ P+   Y+ +
Sbjct: 609 NGLSPDTITYRSL 621



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 158/357 (44%), Gaps = 67/357 (18%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA--- 275
           L+K   + GRV+D  R+   +       +    VTY T+V+   +AG ++ AR++++   
Sbjct: 104 LIKRLCSGGRVADAERVFATL------GASATVVTYNTMVNGYCRAGRIEDARRLISGMP 157

Query: 276 -----------------------------EMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
                                        +M   G   + +TY+ILL   C+     +A 
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAM 217

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            LL EM      EPD+V+YN+LI+      D   AL   +++ + G  P  ++YT ++K+
Sbjct: 218 VLLDEMRAKG-CEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKS 276

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
              S + K   ++F EM  + +   D V +N +V   C+ GLV+ A ++++ M E+G  P
Sbjct: 277 LCGSERWKEVEELFAEMASN-KCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIP 335

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKER----------------CEVKK----EGVN 466
           ++ TY S+ +G+    +  +A+ L   +K                  C +++    E + 
Sbjct: 336 DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELM 395

Query: 467 AD---SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           A+   SD P    PDE   + +     +     +A+++V  M E+G  P+   Y  I
Sbjct: 396 AEMVCSDCP----PDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSI 448



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 190/430 (44%), Gaps = 47/430 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P    ++T+V+ L   G         L D  +K V   S+   +    PD   Y+++L+ 
Sbjct: 300 PDEVTFNTIVTSLCQQG---------LVDRAIKVVDHMSEHGCI----PDIVTYSSILDG 346

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITL 126
             ++G+    ++L  ++  +G KPD + Y  ++K LC+    +H      E + EM  + 
Sbjct: 347 LCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEH----AEELMAEMVCSD 402

Query: 127 C---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG--DD 181
           C     TF +++A+    G ++ A  +V+ M E   +        D+  Y+S  +G  ++
Sbjct: 403 CPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNP-------DIVTYNSIIDGLCNE 455

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
              D+  E LL N  +   +P ++          + TL+KG  +  R  D  +++  M  
Sbjct: 456 RCIDDAME-LLSNLQSYGCKPDIV---------TFNTLLKGLCSVDRWEDAEQLMVNMMH 505

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            +     PD  T+ TV+++L + G + +A + L  M   G   N+ TYNI++      L+
Sbjct: 506 SD---CPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDAL---LK 559

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
             K +E L+ ++      PD+++YN +I           AL     M + G++P  I+Y 
Sbjct: 560 AGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYR 619

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +L            A ++    L+D  +  D   +N ++ G+C+    + A      M  
Sbjct: 620 SLAYGICREDGTDRAIRMLCR-LQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVS 678

Query: 422 NGFYPNVATY 431
           +G  P+ +TY
Sbjct: 679 SGCMPDESTY 688



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 24/269 (8%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           V    ++  L   G +  A +V A +   G  A  +TYN ++ GYC+  +I+ A+ L+  
Sbjct: 99  VPCNILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLISG 155

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M       PD  ++N LI    +      AL  F++M  RG +P+ ++Y+ L+ A   +S
Sbjct: 156 M----PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKAS 211

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
             + A  + DEM R    + DIV +N+L+   C  G V+EA  I+  +  +G  P+  TY
Sbjct: 212 GYRQAMVLLDEM-RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTY 270

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
             +   +  + +       WKE++E          A         PDE   + +     +
Sbjct: 271 TPVLKSLCGSER-------WKEVEELFAEMASNKCA---------PDEVTFNTIVTSLCQ 314

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                +A+++V  M EHG  P+   Y  I
Sbjct: 315 QGLVDRAIKVVDHMSEHGCIPDIVTYSSI 343



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 136/336 (40%), Gaps = 42/336 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ S   P    ++TV++ L   G         L D  +K V + S+    +   PD   
Sbjct: 398 MVCSDCPPDEVTFNTVIASLCQKG---------LVDRAIKVVEQMSE----NGCNPDIVT 444

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++   N       ++L   +  +G KPD++T+N ++K      R      ++  ++
Sbjct: 445 YNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMM 504

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG----RRDVCKIIRELDLEDYSSE 176
                   TTF +++ +    G L  A   ++ M E      +    I+ +  L+   ++
Sbjct: 505 HSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQ 564

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                        KLL    N +           P+   Y T++      G++ + + +L
Sbjct: 565 EA----------LKLLSGMTNGT-----------PDLITYNTVISNITKAGKMEEALDLL 603

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              R    N   PD +TY ++   + +    DRA ++L  +  +G+  +   YN +L G+
Sbjct: 604 ---RVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGF 660

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           CQ  + D A +    M     + PD  +Y IL++  
Sbjct: 661 CQNWRTDIAIDCFAHMVSSGCM-PDESTYIILLEAL 695


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 223/506 (44%), Gaps = 47/506 (9%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T +YN +L A    G+ K   QLFD+M    + PDV+TY +M+      S     + +L
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +   G+ L    + S++A     G +  A  +V+       D+      LD   +++ 
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVE-------DMVMHGVVLDAAVFTTV 361

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G     D      L  + N   E  +  +  A +   YT L+ G    G + +  R+L
Sbjct: 362 MSGFCRKGD------LAAARNWFDE--MQKRGLAADGVTYTALINGLCRAGELKEAERVL 413

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M   ED     D VTYT ++    K G M  A  V  +M +  V  N +TY  L  G 
Sbjct: 414 QEM---EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+Q  +  A ELL EM     +E ++ +YN LI+G     +   A+    +M   G+ P 
Sbjct: 471 CKQGDVCAANELLHEMCSKG-LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +YTT++ A   S +   A+ +  EML D  +K  IV +N+L+ G+C  G VE  KR++
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           E M E   +PN  TY SL           +   + K +K   E+ K  ++ +      + 
Sbjct: 589 EWMLEKNIHPNTTTYNSLM----------KQYCIEKNMKSTTEIYKGMLSQE------VV 632

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
           P+E   + L     +A   ++AL   + M E G     + Y  +   ++ +    K  ++
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKK----KKFTE 688

Query: 537 AR---QDRRRERKRA-AEAFKFWLGL 558
           AR   +  R+ER  A  + + F++ L
Sbjct: 689 ARRLFEKMRKERLTAEPDVYNFYIDL 714



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A Q+  E+       N  +YNILLK  C   +I  A +L  EMA      PDVV+Y 
Sbjct: 238 LDEAVQLFQELPE----KNTCSYNILLKALCTAGRIKDAHQLFDEMAS----PPDVVTYG 289

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           I++ G+  + +   A+   +EM ARG+    ++YT+++       Q   A +V ++M+  
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V +D   +  ++ G+CR G +  A+   + M++ G   +  TY +L NG+  A +  E
Sbjct: 350 G-VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKE 408

Query: 447 ALLLWKEIKER 457
           A  + +E++++
Sbjct: 409 AERVLQEMEDK 419



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 21/294 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y A+ +     G      +L  +M   G + ++ TYN +I    +A      +  
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  + E G+   + T+ +++ A     +L+ A +++Q M +       +   + +  +  
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +    + E +L  +I+             PN+  Y +LMK Y  E  +  T  +
Sbjct: 578 --SGRVEGGKRLLEWMLEKNIH-------------PNTTTYNSLMKQYCIEKNMKSTTEI 622

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  QE     P+  TY  ++    KA +M  A    +EM   G      +YN L++ 
Sbjct: 623 YKGMLSQE---VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRL 679

Query: 296 YCQQLQIDKAKELLREMADD-AKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             ++ +  +A+ L  +M  +    EPDV  YN  ID     D+    L   +E+
Sbjct: 680 LNKKKKFTEARRLFEKMRKERLTAEPDV--YNFYIDLSFNEDNLESTLALCDEL 731



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y  ++ A     +  +   L  +M + G KP ++TYNV++     + R      
Sbjct: 527 KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +LE +LE  I    TT+ SL+  Y    +++    I + M
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM 626


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 194/414 (46%), Gaps = 26/414 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P     +++LN   +  +    + L DQM E G +PD +T+  +I      ++    V 
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R+++ G    + T+  +V      GD+++A  ++  M   + +   +I    ++   
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLC 271

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                DD             ++N  +E  +  K   PN   Y++L+    N  R SD  R
Sbjct: 272 KYRHEDD-------------ALNLFTE--MENKGVRPNVITYSSLISCLCNYERWSDASR 316

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT+  ++ A VK G +  A ++  EM +  +  +  TY+ L+ 
Sbjct: 317 LLSDMIERKIN---PNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 373

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++D+AK +  E+       P+VV+YN LI+GF         +  F EM  RG+ 
Sbjct: 374 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLV 432

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++YTTL+  F  +     A  VF +M+ D  V  +I+ +N L++G C+ G +E+A  
Sbjct: 433 GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMV 491

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           + E ++ +   P + TY  +  G+  A K  +   L+      C +  +GV  D
Sbjct: 492 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF------CSLSLKGVKPD 539



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 180/405 (44%), Gaps = 61/405 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A A + K    + L ++M   G   ++ TYN++I    R S+  L + +
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  Y     +  A  +V  M E                   
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE------------------- 183

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P++  +TTL+ G     + S+ V +
Sbjct: 184 -------------------------------MGYRPDTITFTTLIHGLFLHNKASEAVAL 212

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M ++      P+ VTY  VV+ L K G +D A  +L +M    + AN + Y+ ++  
Sbjct: 213 VDRMVQR---GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDS 269

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+    D A  L  EM ++  + P+V++Y+ LI      +  + A    ++M  R I P
Sbjct: 270 LCKYRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINP 328

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             +++  L+ AF    +   A K++DEM++   DP    DI  ++ L+ G+C    ++EA
Sbjct: 329 NVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEA 384

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           K + E M     +PNV TY +L NG   A++  E + L++E+ +R
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR 429



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 186/430 (43%), Gaps = 68/430 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P++  +  VV+ L   GD          D+    + K     I    + +   
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGD---------IDLAFNLLNKMEAAKI----EANVVI 262

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ V+++          L LF +M   G +P+V+TY+ +I       R      +L  ++
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I   + TF +L+ A+V  G L  AE                                
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAE-------------------------------- 350

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                +++++++  SI+P             +   Y++L+ G+    R+ +   M   M 
Sbjct: 351 -----KLYDEMIKRSIDP-------------DIFTYSSLINGFCMHDRLDEAKHMFELMI 392

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            ++     P+ VTY T+++   KA  +D   ++  EM++ G+  N +TY  L+ G+ Q  
Sbjct: 393 SKD---CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQAR 449

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
             D A+ + ++M  D  + P++++YN L+DG         A+  F  ++   + PT  +Y
Sbjct: 450 DCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 508

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             +++    + + +    +F   L    VK D++ +N ++ G+CR GL EEA  +  +M+
Sbjct: 509 NIMIEGMCKAGKVEDGWDLFCS-LSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMR 567

Query: 421 ENGFYPNVAT 430
           E+G  P+  T
Sbjct: 568 EDGPLPDSGT 577



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
           +DD+ G    F  M      P+   +  L+ A A   +  L   + ++M R   +  ++ 
Sbjct: 66  LDDAIG---LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQR-LGISHNLY 121

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +N+L+  +CR   +  A  ++ +M + G+ P++ T  SL NG    ++  +A+ L  ++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 455 KE 456
            E
Sbjct: 182 VE 183


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 219/455 (48%), Gaps = 41/455 (9%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLERILE 121
           ++N     G+P++   + D + E G KP ++TY  +  L A   +KH   +  ++ ++ E
Sbjct: 78  LMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTL--LAALTIQKHFDSIHSIISQVEE 135

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGD 180
            G+      F +++ A+   G+++ A      M+E G +        L ++ Y     G+
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTL-IKGYGIA--GE 192

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            ++  ++ E +  +            +   PN R Y  L++ + N+  +   ++    + 
Sbjct: 193 PEESQKLLELMSQD------------ENVRPNLRTYNVLVRAWCNKKNI---MKAWNVVY 237

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   +   PD VTY T+ +A  + G   +A  ++ EM    V  N  T  I++ GYC++ 
Sbjct: 238 KMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEG 297

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I +A + +  M  D  ++P++V +N LI GFI   D  G       M   G+ P  I++
Sbjct: 298 KIKEALQFVYRM-KDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITF 356

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           +T+M A++ +       ++FD+M++  R++ D   +++L +GY R G  E+A+ I+  M 
Sbjct: 357 STIMNAWSAAGFMDKCREIFDDMVK-ARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           ++GF+PNV  + ++ NG   A +   A+ +++++   CE           + P LK  E 
Sbjct: 416 KSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKM---CEC---------GIAPNLKTFET 463

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           L+    +   R  +  K+ E++  MEE  + P KT
Sbjct: 464 LIWGYGE--ARQPW--KSEEVLQIMEEFNVQPEKT 494



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/461 (21%), Positives = 203/461 (44%), Gaps = 79/461 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+++ L            K FD +   + +  +  +    +PD+  
Sbjct: 98  IIEGGHKPSLVTYTTLLAALTIQ---------KHFDSIHSIISQVEENGM----EPDSIF 144

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK------------------- 101
           +NAV+NA +  G  ++ ++ F +M E G+KP   T+N +IK                   
Sbjct: 145 FNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMS 204

Query: 102 ---------------LCARASRKHLLVF--VLERILEMGITLCMTTFQSLVAAYVGFGDL 144
                          + A  ++K+++    V+ +++  G+     T+ ++  AY   G+ 
Sbjct: 205 QDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEA 264

Query: 145 EIAETIVQAMREG-----RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             AE I+  M+        R  C II       Y    EG   +  +   ++    +   
Sbjct: 265 SQAEGIILEMQNSNVQPNERTCCIIIG-----GYC--KEGKIKEALQFVYRMKDLGLQ-- 315

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                      PN  ++ +L+KG+++         +L  M   E+    PD +T++T+++
Sbjct: 316 -----------PNLVVFNSLIKGFIDAVDRDGVNEVLTLM---EEFGVKPDVITFSTIMN 361

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           A   AG MD+ R++  +M +  +  +   Y+IL KGY +  + +KA+E+L  M       
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSG-FH 420

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+VV +  +I+G+        A+  F +M   GIAP   ++ TL+  +  + QP  + +V
Sbjct: 421 PNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEV 480

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             +++ +  V+ +     ++ E +   GL +EA RI+  +K
Sbjct: 481 L-QIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVK 520


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 122/559 (21%), Positives = 242/559 (43%), Gaps = 69/559 (12%)

Query: 8    PHVKAWSTVVSRLAASGDDGPV-------------ESVKLFDVVVKRV---RK------- 44
            P++  ++ ++  L  +GD G               ++V L +VV+K +   RK       
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALEL 934

Query: 45   FSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
            F + +      PD   Y+ ++++    GK     +L + M   G  P+V+TY+ ++    
Sbjct: 935  FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLC 994

Query: 105  RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
            +A +      +L+R+   G +  + T+ +++  +   G ++ A  +++ M +G      +
Sbjct: 995  KAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVV 1054

Query: 165  IRELDLEDYSSENEGDDDDD--DEVFEK-LLPNSINPSS-----------------EPPL 204
               + L+ +    + +D     + + EK  +PN    +S                    +
Sbjct: 1055 TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM 1114

Query: 205  LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
            + K   PN   Y T++ G     +V + V +L  M     N   PD VT+ T++ A+ K 
Sbjct: 1115 IQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML---SNNCVPDIVTFNTIIDAMCKT 1171

Query: 265  GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
              +D A ++   +   G   N +TYN L+ G C+  + D+A+ LLREM       PD+++
Sbjct: 1172 YRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIIT 1231

Query: 325  YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
            YN +IDG         A   F +M + G+AP  ++Y+ ++ +         AN V + ML
Sbjct: 1232 YNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELML 1291

Query: 385  R---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
            +   DP      + +  L++G+C+ G +++A  I++ +   G YP+V T+    + +S  
Sbjct: 1292 KNGFDPGA----ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLS-- 1345

Query: 442  RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
                          +R  +++ G   ++ L   L PD    + L      A+    A+++
Sbjct: 1346 --------------KRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDL 1391

Query: 502  VACMEEHGIPPNKTKYKKI 520
               M + G  P+   Y  +
Sbjct: 1392 FEVMRQCGCEPDNATYTTL 1410



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 214/469 (45%), Gaps = 47/469 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V +++TV++ L     D   E+ ++ D +++R             +P+   
Sbjct: 291 MVTRGCPPDVVSYTTVINGLCKL--DQVDEACRVMDKMIQR-----------GCQPNVIT 337

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCAR--ASRKHLLVFVLE 117
           Y  +++    +G     ++L  +M E G +P+ +TYN +M   C R    R H    VL+
Sbjct: 338 YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQ---VLQ 394

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSS 175
            +++ G       + ++++ +   G L  A  +++ M  R  R DV  +   +D    ++
Sbjct: 395 MMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAA 454

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +          ++LL  SI             AP+   Y+ L+       R+ +    
Sbjct: 455 AIDSA--------QELLRMSIGMDC---------APDVVAYSILIHALCKAKRLPEAESW 497

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M +   N  +PD VTY +VV  L K+  ++ A  +   M   GV  + +TY+I++  
Sbjct: 498 LDVMVK---NRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHS 554

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+   +D A ++L  M  +AK  PDVV+Y+ LI+G         A   F EM   G AP
Sbjct: 555 FCKDNNLDSAFKMLERM-KEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAP 613

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y TL+      ++ + A ++  E++R      D + +  L+ G C    +EEA R+
Sbjct: 614 NLVTYNTLIDGLCKINKVEQAAEML-EIMRKQSCTPDSITYTCLINGLCNASRLEEAWRV 672

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG 464
           +  MK+ G  P+  TYG+L   +   +K     L+ + +KE  E  +EG
Sbjct: 673 LREMKDKGCLPDRMTYGTLLRAL---QKTNNLELVEQLLKEM-EATEEG 717



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 135/275 (49%), Gaps = 17/275 (6%)

Query: 246  ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
               P+  T+T ++  L +AG +  A ++L EM R GVP N I +N+++KG C   ++D A
Sbjct: 872  CCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSA 931

Query: 306  KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             EL +EM +     PDV +Y+ ++D  +       A     +M ++G +P  ++Y++L+ 
Sbjct: 932  LELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLH 991

Query: 366  AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                + +   A  +   M R      +IV +N +++G+C++G ++EA  ++E M + G  
Sbjct: 992  GLCKAGKLDEATALLQRMTRSG-CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 1050

Query: 426  PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
            PNV TY  L +      K  +A+ L + + E+  V                P+    ++L
Sbjct: 1051 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYV----------------PNLFTYNSL 1094

Query: 486  ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             D+  +     +A ++++ M + G  PN   Y  +
Sbjct: 1095 LDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTV 1129



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/500 (21%), Positives = 219/500 (43%), Gaps = 71/500 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD+  YN ++N  +   +    ++L ++M + G  P+V +YN ++    +A+R    +++
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 116 LERILEMGI------------TLC-----------------------MTTFQSLVAAYVG 140
           LE+++  G              LC                       + T+ +LV  +  
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 347

Query: 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS 200
            GDL+ A  +V+ M E       I     +  +   N  D +   +V + ++        
Sbjct: 348 VGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRN--DMERAHQVLQMMIQTGC---- 401

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
                     P++  Y+T++ G+   G++ +   +L  M R+      PD    +T++ A
Sbjct: 402 ---------PPDAINYSTIISGFCKAGKLREAHDLLEQMIRR---GCRPDVACLSTLIDA 449

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L KA ++D A+++L     +    + + Y+IL+   C+  ++ +A+  L  M  + +  P
Sbjct: 450 LCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKN-RCYP 508

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           DVV+YN ++DG         A   F+ MRA G+ P  ++Y+ ++ +F   +    A K+ 
Sbjct: 509 DVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKML 568

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           + M ++ +   D+V ++ L+ G C+ G V++A  + + M   G  PN+ TY +L +G+  
Sbjct: 569 ERM-KEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCK 627

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             K  +A  + + ++++                   PD      L +    A+   +A  
Sbjct: 628 INKVEQAAEMLEIMRKQ----------------SCTPDSITYTCLINGLCNASRLEEAWR 671

Query: 501 IVACMEEHGIPPNKTKYKKI 520
           ++  M++ G  P++  Y  +
Sbjct: 672 VLREMKDKGCLPDRMTYGTL 691



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 123/237 (51%), Gaps = 5/237 (2%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           + KT  P+S  Y T++ G     R+ D +R+L  M    DN   P+  +Y TV+    KA
Sbjct: 222 MSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEM---VDNGFAPNVFSYNTVLHGFCKA 278

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
             ++ A  +L +M   G P + ++Y  ++ G C+  Q+D+A  ++ +M      +P+V++
Sbjct: 279 NRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG-CQPNVIT 337

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y  L+DGF  + D  GA+    +M  RG  P  I+Y  +M  F   +  + A++V  +M+
Sbjct: 338 YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVL-QMM 396

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
                  D + ++ ++ G+C+ G + EA  ++E+M   G  P+VA   +L + +  A
Sbjct: 397 IQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKA 453



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 19/271 (7%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D VTY+T++S  ++AG +  A ++  EM R G+ A+   +  +L+G C   Q   A    
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF 219

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           REM+      PD V+YN +I+G    D    A+    EM   G AP   SY T++  F  
Sbjct: 220 REMSKTCP--PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCK 277

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +++ + A  + ++M+       D+V++  ++ G C++  V+EA R++++M + G  PNV 
Sbjct: 278 ANRVENALWLLEQMVTRG-CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVI 336

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TYG+L +G         A+ L +++ ER                  +P+    + +  + 
Sbjct: 337 TYGTLVDGFCRVGDLDGAVELVRKMTER----------------GYRPNAITYNNIMHVF 380

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            R     +A +++  M + G PP+   Y  I
Sbjct: 381 CRRNDMERAHQVLQMMIQTGCPPDAINYSTI 411



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 32/301 (10%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K    ++ ++ ++++G  + G+ SD V       R+      PD VTY T+++ L K+  
Sbjct: 190 KGLKAHAGVHKSILRGLCDAGQCSDAVLHF----REMSKTCPPDSVTYNTMINGLSKSDR 245

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A ++L EM   G   N  +YN +L G+C+  +++ A  LL +M       PDVVSY 
Sbjct: 246 LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRG-CPPDVVSYT 304

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA----LSSQPKLANKVFDE 382
            +I+G   +D    A    ++M  RG  P  I+Y TL+  F     L    +L  K+ + 
Sbjct: 305 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 364

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
             R      + + +N ++  +CR   +E A ++++ M + G  P+   Y ++ +G   A 
Sbjct: 365 GYRP-----NAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAG 419

Query: 443 KPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
           K  EA  LL + I+  C                 +PD   L  L D   +AA    A E+
Sbjct: 420 KLREAHDLLEQMIRRGC-----------------RPDVACLSTLIDALCKAAAIDSAQEL 462

Query: 502 V 502
           +
Sbjct: 463 L 463



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +  ++  Y+TL+ G++  G++     +   M R+   A    H    +++  L  AG   
Sbjct: 157 WGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVH---KSILRGLCDAGQCS 213

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A     EM++   P + +TYN ++ G  +  ++D A  LL EM D+    P+V SYN +
Sbjct: 214 DAVLHFREMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG-FAPNVFSYNTV 271

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           + GF   +    AL    +M  RG  P  +SYTT++       Q   A +V D+M++   
Sbjct: 272 LHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG- 330

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            + +++ +  LV+G+CR+G ++ A  ++ +M E G+ PN  TY ++
Sbjct: 331 CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNI 376



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 123/576 (21%), Positives = 227/576 (39%), Gaps = 111/576 (19%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M+  G  P+V  ++ ++      G     +++ L +V+V++              P+   
Sbjct: 1044 MVDGGCQPNVVTYTVLLDAFCKCGK--AEDAIGLVEVMVEK-----------GYVPNLFT 1090

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            YN++L+      + ++  QL   M + G  P+V++YN +I    +A++ H  V +LE++L
Sbjct: 1091 YNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML 1150

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                   + TF +++ A      ++IA  +   ++E     C      +L  Y+S   G 
Sbjct: 1151 SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG---CTP----NLVTYNSLVHG- 1202

Query: 181  DDDDDEVFEKLLPNSINPSSEPPLL-----PKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                       L  S        LL      +  +P+   Y T++ G     RV    ++
Sbjct: 1203 -----------LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKL 1251

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               M     +   PD VTY+ V+S+L K   MD A  VL  M + G     ITY  L+ G
Sbjct: 1252 FLQML---SDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDG 1308

Query: 296  YCQQLQIDKAKELLR----------------------------------EMADDAKIEPD 321
            +C+   +DKA E+L+                                  E    A + PD
Sbjct: 1309 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPD 1368

Query: 322  VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA------------- 368
             V+YN L+ GF     +  A+  F  MR  G  P   +YTTL+                 
Sbjct: 1369 TVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVS 1428

Query: 369  ---LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
               + +  KL +++  ++     V+ D+     +V+ + + G  ++A+++ E M +    
Sbjct: 1429 KSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQR--- 1485

Query: 426  PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
             NV  + ++       ++  +A  LW+ +        EGV          +PD     +L
Sbjct: 1486 -NVVLWSAMLGVYVFHKQEEQAFGLWRVM------GLEGV----------EPDAVTFLSL 1528

Query: 486  ADICVRAAFFRKAL-EIVACMEEHGIPPNKTKYKKI 520
              +C  A     A+ E V+   ++G+ P    +  +
Sbjct: 1529 LTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCV 1564



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/565 (21%), Positives = 212/565 (37%), Gaps = 98/565 (17%)

Query: 7    LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
            +P V  +S +++ L  +G    V+  K FDV  + +     P++V+        YN +++
Sbjct: 577  VPDVVTYSALINGLCKAG---TVD--KAFDVFQEMLGCGCAPNLVT--------YNTLID 623

Query: 67   ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                + K ++  ++ + M +    PD +TY  +I     ASR      VL  + + G   
Sbjct: 624  GLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLP 683

Query: 127  CMTTFQSLVAAYVGFGDLEIAETIV---QAMREG--------------RRDVCKIIRELD 169
               T+ +L+ A     +LE+ E ++   +A  EG              R DV  +   + 
Sbjct: 684  DRMTYGTLLRALQKTNNLELVEQLLKEMEATEEGQWNANGARLHRFVIRGDVLMMAMAVP 743

Query: 170  LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
            +   +S+    D  D +                      F+P    Y          G  
Sbjct: 744  MAALTSQTRVLDSKDQQ--------------------GQFSPRPHQYRVTAVATQG-GFH 782

Query: 230  SDTVRMLGAMRRQEDNASHPDHVT---YTTVVSALVKA--------GSMDRARQVLAEMT 278
               VR+L +    E   +  +  T    TTVV  +++         G  D A       +
Sbjct: 783  HKIVRILNSRFAWEYAETALERFTGKLTTTVVGKVLQGVRNGDAALGFFDWA------TS 836

Query: 279  RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
            + G   +  T N LL+     L++ + K+ L+   +     P++ ++ ILI G     D 
Sbjct: 837  QEGYNHDTYTCNCLLQAL---LRLKRPKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDI 893

Query: 339  AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
              A     EM   G+    I +  ++K    + +   A ++F EM        D+  ++ 
Sbjct: 894  GTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYST 953

Query: 399  LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKER 457
            +V+   + G V++A R++E M   G  PNV TY SL +G+  A K  EA  LL +  +  
Sbjct: 954  IVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 1013

Query: 458  CEVKKEGVNA----------------------DSDLPPPLKPDEELLDALADICVRAAFF 495
            C       N                       D    P +     LLDA    C +A   
Sbjct: 1014 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK-CGKA--- 1069

Query: 496  RKALEIVACMEEHGIPPNKTKYKKI 520
              A+ +V  M E G  PN   Y  +
Sbjct: 1070 EDAIGLVEVMVEKGYVPNLFTYNSL 1094


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 223/506 (44%), Gaps = 47/506 (9%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T +YN +L A    G+ K   QLFD+M    + PDV+TY +M+      S     + +L
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +   G+ L    + S++A     G +  A  +V+       D+      LD   +++ 
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVE-------DMVMHGVVLDAAVFTTV 361

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G     D      L  + N   E  +  +  A +   YT L+ G    G + +  R+L
Sbjct: 362 MSGFCRKGD------LAAARNWFDE--MQKRGLAADGVTYTALINGLCRAGELKEAERVL 413

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M   ED     D VTYT ++    K G M  A  V  +M +  V  N +TY  L  G 
Sbjct: 414 QEM---EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+Q  +  A ELL EM     +E ++ +YN LI+G     +   A+    +M   G+ P 
Sbjct: 471 CKQGDVCAANELLHEMCSKG-LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +YTT++ A   S +   A+ +  EML D  +K  IV +N+L+ G+C  G VE  KR++
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL 588

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           E M E   +PN  TY SL     +           K +K   E+ K  ++ +      + 
Sbjct: 589 EWMLEKNIHPNTTTYNSLMKQYCIE----------KNMKSTTEIYKGMLSQE------VV 632

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
           P+E   + L     +A   ++AL   + M E G     + Y  +   ++ +    K  ++
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKK----KKFTE 688

Query: 537 ARQ--DRRRERKRAAE--AFKFWLGL 558
           AR+  ++ R+ +  AE   + F++ L
Sbjct: 689 ARRLFEKMRKDRLTAEPDVYNFYIDL 714



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A Q+  E+       N  +YNILLK  C   +I  A +L  EMA      PDVV+Y 
Sbjct: 238 LDEAVQLFQELPE----KNTCSYNILLKALCTAGRIKDAHQLFDEMAS----PPDVVTYG 289

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           I++ G+  + +   A+   +EM ARG+    ++YT+++       Q   A +V ++M+  
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V +D   +  ++ G+CR G +  A+   + M++ G   +  TY +L NG+  A +  E
Sbjct: 350 G-VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKE 408

Query: 447 ALLLWKEIKER 457
           A  + +E++++
Sbjct: 409 AERVLQEMEDK 419



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 21/294 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y A+ +     G      +L  +M   G + ++ TYN +I    +A      +  
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  + E G+   + T+ +++ A     +L+ A +++Q M +       +   + +  +  
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +    + E +L  +I+             PN+  Y +LMK Y  E  +  T  +
Sbjct: 578 --SGRVEGGKRLLEWMLEKNIH-------------PNTTTYNSLMKQYCIEKNMKSTTEI 622

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  QE     P+  TY  ++    KA +M  A    +EM   G      +YN L++ 
Sbjct: 623 YKGMLSQE---VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRL 679

Query: 296 YCQQLQIDKAKELLREMADD-AKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             ++ +  +A+ L  +M  D    EPDV  YN  ID     D+    L   +E+
Sbjct: 680 LNKKKKFTEARRLFEKMRKDRLTAEPDV--YNFYIDLSFNEDNLESTLALCDEL 731



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y  ++ A     +  +   L  +M + G KP ++TYNV++     + R      
Sbjct: 527 KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +LE +LE  I    TT+ SL+  Y    +++    I + M
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM 626


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 194/465 (41%), Gaps = 71/465 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +L + A +      L L  QM  FG  P+V T N++I      +R      V
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G     TTF +L+                       R +C             
Sbjct: 114 LAKILKLGHQPDPTTFTTLI-----------------------RGLCV------------ 138

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K++              + F PN   Y TL+ G    G  S  +R+
Sbjct: 139 --EGKIGEALHLFDKMID-------------EGFQPNVVTYGTLINGLCKVGNTSAAIRL 183

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R  E     PD V YT+++ +L K   +  A  + ++M   G+  +  TY  L+  
Sbjct: 184 L---RSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHA 240

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL +M  ++KI PDVV ++ ++D          A    + M  RG+ P
Sbjct: 241 LCNLCEWKHVTTLLNQMV-NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEP 299

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YTTLM    L S+   A KVFD M+R      D++++  L+ GYC++  +++A  +
Sbjct: 300 DVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAP-DVISYTTLINGYCKIHKIDKAMYL 358

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            E M    + P+  TY +L +G+    +  +A+ L+ E+  R ++            P L
Sbjct: 359 FEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQM------------PDL 406

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                LLD+L   C       +A+ ++  +E   + P+   Y  I
Sbjct: 407 VTYSILLDSLCKNC----HLEEAMALLKAIEASNLNPDIQVYNII 447



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 188/438 (42%), Gaps = 68/438 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P    ++T++  L   G  G  E++ LFD ++               +P+   
Sbjct: 117 ILKLGHQPDPTTFTTLIRGLCVEGKIG--EALHLFDKMIDE-----------GFQPNVVT 163

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +PDV+ Y  +I    +  +      +  +++
Sbjct: 164 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMV 223

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ SLV A     + +   T++  M                          
Sbjct: 224 GQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQM-------------------------- 257

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 V  K+LP+ +                  I++T++     EG+V++   ++  M 
Sbjct: 258 ------VNSKILPDVV------------------IFSTVVDALCKEGKVTEAHEIVDMMI 293

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      PD VTYTT++        MD A +V   M R G   + I+Y  L+ GYC+  
Sbjct: 294 QR---GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIH 350

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +IDKA  L  EM     I PD  +YN L+ G   +     A+  F+EM ARG  P  ++Y
Sbjct: 351 KIDKAMYLFEEMCRKEWI-PDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTY 409

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L+ +   +   + A  +  + +    +  DI  +N++++G CR G +E A+ +   + 
Sbjct: 410 SILLDSLCKNCHLEEAMALL-KAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS 468

Query: 421 ENGFYPNVATYGSLANGI 438
             G +P+V TY  + +G+
Sbjct: 469 SKGLHPSVWTYNIMIHGL 486



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 191/442 (43%), Gaps = 39/442 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P+V  + T+++ L   G+             ++ +R         + +PD   
Sbjct: 152 MIDEGFQPNVVTYGTLINGLCKVGNT---------SAAIRLLRSMEQ----GNCQPDVVI 198

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y +++++     +  +   LF QM   G  PD+ TY  ++  LC     KH+   +L ++
Sbjct: 199 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT-LLNQM 257

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSEN 177
           +   I   +  F ++V A    G +  A  IV  M  R    DV      +D     SE 
Sbjct: 258 VNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEM 317

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
               D+  +VF+              ++ K FAP+   YTTL+ GY    ++   + +  
Sbjct: 318 ----DEAVKVFDM-------------MVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFE 360

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M R+E     PD  TY T++  L   G +  A  +  EM   G   + +TY+ILL   C
Sbjct: 361 EMCRKE---WIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLC 417

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +   +++A  LL+ + + + + PD+  YNI+IDG     +   A   F+ + ++G+ P+ 
Sbjct: 418 KNCHLEEAMALLKAI-EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSV 476

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            +Y  ++           ANK+F EM        D   +N +  G+ +      A +++E
Sbjct: 477 WTYNIMIHGLCKRGLLNEANKLFMEM-DGNDCSPDGCTYNTIARGFLQNNETLRAIQLLE 535

Query: 418 RMKENGFYPNVATYGSLANGIS 439
            M   GF  +V+T   L   +S
Sbjct: 536 EMLARGFSADVSTTTLLVEMLS 557


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 219/455 (48%), Gaps = 41/455 (9%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLERILE 121
           ++N     G+P++   + D + E G KP ++TY  +  L A   +KH   +  ++ ++ E
Sbjct: 78  LMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTL--LAALTIQKHFDSIHSIISQVEE 135

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGD 180
            G+      F +++ A+   G+++ A      M+E G +        L ++ Y     G+
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTL-IKGYGIA--GE 192

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            ++  ++ Z +  +            +   PN R Y  L++ + N+  +   ++    + 
Sbjct: 193 PEESQKLLZLMSQD------------ENVRPNLRTYNVLVRAWCNKXNI---MKAWNVVY 237

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   +   PD VTY T+ +A  + G   +A  ++ EM    V  N  T  I++ GYC++ 
Sbjct: 238 KMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEG 297

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I +A + +  M  D  ++P++V +N LI GFI   D  G       M   G+ P  I++
Sbjct: 298 KIKEALQFVYRM-KDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITF 356

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           +T+M A++ +       ++FD+M++  R++ D   +++L +GY R G  E+A+ I+  M 
Sbjct: 357 STIMNAWSAAGFMDKCREIFDDMVK-ARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           ++GF+PNV  + ++ NG   A +   A+ +++++   CE           + P LK  E 
Sbjct: 416 KSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKM---CEC---------GIAPNLKTFET 463

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           L+    +   R  +  K+ E++  MEE  + P KT
Sbjct: 464 LIWGYGE--ARQPW--KSEEVLQIMEEFNVQPEKT 494



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 156/329 (47%), Gaps = 23/329 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   YTTL+     +    D++  +  + + E+N   PD + +  V++A  ++G+M  A
Sbjct: 105 PSLVTYTTLLAALTIQKHF-DSIHSI--ISQVEENGMEPDSIFFNAVINAFSESGNMQEA 161

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +   +M   G      T+N L+KGY    + +++++LL  M+ D  + P++ +YN+L+ 
Sbjct: 162 MKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVR 221

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            +    +   A     +M A G+ P  ++Y T+  A+A + +   A  +  EM ++  V+
Sbjct: 222 AWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEM-QNSNVQ 280

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPG--EA 447
            +     +++ GYC+ G ++EA + + RMK+ G  PN+  + SL  G I    + G  E 
Sbjct: 281 PNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEV 340

Query: 448 LLLWKEIKERCEVKKEG--VNA--------------DSDLPPPLKPDEELLDALADICVR 491
           L L +E   + +V      +NA              D  +   ++PD  +   LA   VR
Sbjct: 341 LTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVR 400

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           A    KA EI+  M + G  PN   +  I
Sbjct: 401 AGEPEKAEEILNAMIKSGFHPNVVMFTTI 429



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 200/461 (43%), Gaps = 79/461 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+++ L            K FD +   + +  +  +    +PD+  
Sbjct: 98  IIEGGHKPSLVTYTTLLAALTIQ---------KHFDSIHSIISQVEENGM----EPDSIF 144

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS------------- 107
           +NAV+NA +  G  ++ ++ F +M E G+KP   T+N +IK    A              
Sbjct: 145 FNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMS 204

Query: 108 -----RKHLLVF------------------VLERILEMGITLCMTTFQSLVAAYVGFGDL 144
                R +L  +                  V+ +++  G+     T+ ++  AY   G+ 
Sbjct: 205 QDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEA 264

Query: 145 EIAETIVQAMREG-----RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             AE I+  M+        R  C II       Y    EG   +  +   ++    +   
Sbjct: 265 SQAEGIILEMQNSNVQPNERTCCIIIG-----GYC--KEGKIKEALQFVYRMKDLGLQ-- 315

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                      PN  ++ +L+KG+++         +L  M   E+    PD +T++T+++
Sbjct: 316 -----------PNLVVFNSLIKGFIDAVDRDGVNEVLTLM---EEFGVKPDVITFSTIMN 361

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           A   AG MD+ R++  +M +  +  +   Y+IL KGY +  + +KA+E+L  M       
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSG-FH 420

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+VV +  +I+G+        A+  F +M   GIAP   ++ TL+  +  + QP  + +V
Sbjct: 421 PNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEV 480

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             +++ +  V+ +     ++ E +   GL +EA RI+  +K
Sbjct: 481 L-QIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVK 520


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 219/455 (48%), Gaps = 41/455 (9%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLERILE 121
           ++N     G+P++   + D + E G KP ++TY  +  L A   +KH   +  ++ ++ E
Sbjct: 78  LMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTL--LAALTIQKHFDSIHSIISQVEE 135

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGD 180
            G+      F +++ A+   G+++ A      M+E G +        L ++ Y     G+
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTL-IKGYGIA--GE 192

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            ++  ++ E +  +            +   PN R Y  L++ + N+  +   ++    + 
Sbjct: 193 PEESQKLLELMSQD------------ENVRPNLRTYNVLVRAWCNKKNI---MKAWNVVY 237

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   +   PD VTY T+ +A  + G   +A  ++ EM    V  N  T  I++ GYC++ 
Sbjct: 238 KMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEG 297

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I +A + +  M  D  ++P++V +N LI GFI   D  G       M   G+ P  I++
Sbjct: 298 KIKEALQFVYRM-KDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITF 356

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           +T+M A++ +       ++FD+M++  R++ D   +++L +GY R G  E+A+ I+  M 
Sbjct: 357 STIMNAWSAAGFMDKCREIFDDMVK-ARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           ++GF+PNV  + ++ NG   A +   A+ +++++   CE           + P LK  E 
Sbjct: 416 KSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKM---CEC---------GIAPNLKTFET 463

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           L+    +   R  +  K+ E++  MEE  + P KT
Sbjct: 464 LIWGYGE--ARQPW--KSEEVLQIMEEFNVQPEKT 494



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/461 (21%), Positives = 203/461 (44%), Gaps = 79/461 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+++ L            K FD +   + +  +  +    +PD+  
Sbjct: 98  IIEGGHKPSLVTYTTLLAALTIQ---------KHFDSIHSIISQVEENGM----EPDSIF 144

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK------------------- 101
           +NAV+NA +  G  ++ ++ F +M E G+KP   T+N +IK                   
Sbjct: 145 FNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMS 204

Query: 102 ---------------LCARASRKHLLVF--VLERILEMGITLCMTTFQSLVAAYVGFGDL 144
                          + A  ++K+++    V+ +++  G+     T+ ++  AY   G+ 
Sbjct: 205 QDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEA 264

Query: 145 EIAETIVQAMREG-----RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             AE I+  M+        R  C II       Y    EG   +  +   ++    +   
Sbjct: 265 SQAEGIILEMQNSNVQPNERTCCIIIG-----GYC--KEGKIKEALQFVYRMKDLGLQ-- 315

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                      PN  ++ +L+KG+++         +L  M   E+    PD +T++T+++
Sbjct: 316 -----------PNLVVFNSLIKGFIDAVDRDGVNEVLTLM---EEFGVKPDVITFSTIMN 361

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           A   AG MD+ R++  +M +  +  +   Y+IL KGY +  + +KA+E+L  M       
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSG-FH 420

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+VV +  +I+G+        A+  F +M   GIAP   ++ TL+  +  + QP  + +V
Sbjct: 421 PNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEV 480

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             +++ +  V+ +     ++ E +   GL +EA RI+  +K
Sbjct: 481 L-QIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVK 520


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 192/411 (46%), Gaps = 33/411 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN ++N           ++LF+++ E G  PDV+TYN +I    +A        +
Sbjct: 35  PTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRL 94

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G    + T+  L+      G ++ A  ++Q M    R  C ++   ++  Y+S
Sbjct: 95  HGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEM---TRKSCDVLP--NIITYNS 149

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF-------APNSRIYTTLMKGYMNEGR 228
             +G           L   S+  ++E   L ++        +P++  ++TL+ G    G+
Sbjct: 150 FLDG-----------LCKQSM--TAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQ 196

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           + +   +   M         P+ +TY  +V+ L KA  M+RA  ++  M   GV  + IT
Sbjct: 197 IDEACSVFDDMIA---GGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVIT 253

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAK----IEPDVVSYNILIDGFILIDDSAGALTF 344
           Y++L+  +C+  ++D+A ELL  MA        + PD V++NILI G     +   A   
Sbjct: 254 YSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASAL 313

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F EM A+ + P  +++  L+     + Q + A  + D ++ +  V  ++V +N LV G C
Sbjct: 314 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILD-LMGNLGVPPNVVTYNALVHGLC 372

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           + G +EEA + +E M  +G  P+  TYGSL   +  A +  +AL L  E+K
Sbjct: 373 KSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELK 423



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 154/325 (47%), Gaps = 28/325 (8%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ +   P+   Y TL+      G + +  R+ G M  +      P+ VTY+ +++ L K
Sbjct: 63  LVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSR---GCVPNVVTYSVLINGLCK 119

Query: 264 AGSMDRARQVLAEMTR--IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-KIEP 320
            G +D AR+++ EMTR    V  N ITYN  L G C+Q    +A EL+R + D + ++ P
Sbjct: 120 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 179

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D V+++ LIDG         A + F++M A G  P  I+Y  L+     + + + A+ + 
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 239

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV-----ATYGSLA 435
           + M+ D  V  D++ +++LV+ +C+   V+EA  ++  M   G  PNV      T+  L 
Sbjct: 240 ESMV-DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILI 298

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
            G   A    +A  L++E+                +   L+PD     AL D   +A   
Sbjct: 299 AGACKAGNFEQASALFEEM----------------VAKNLQPDVMTFGALIDGLCKAGQV 342

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
             A +I+  M   G+PPN   Y  +
Sbjct: 343 EAARDILDLMGNLGVPPNVVTYNAL 367



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 203/469 (43%), Gaps = 54/469 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P +  ++T+++ L  S D G    ++LF+ +V+R              PD   
Sbjct: 28  MARDGVAPTIVTYNTIINGLCKSNDLGA--GMELFEELVER-----------GHHPDVVT 74

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++++    G  ++  +L   M   G  P+V+TY+V+I    +  R   +    E I 
Sbjct: 75  YNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR---IDEARELIQ 131

Query: 121 EMGITLC-----MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           EM    C     + T+ S +           A  +++++R+G   V       D   +S+
Sbjct: 132 EMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV-----SPDTVTFST 186

Query: 176 ENE-----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             +     G  D+   VF+ ++                + PN   Y  L+ G     ++ 
Sbjct: 187 LIDGLCKCGQIDEACSVFDDMIAGG-------------YVPNVITYNALVNGLCKADKME 233

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN----- 285
               M+ +M    D    PD +TY+ +V A  KA  +D A ++L  M   G   N     
Sbjct: 234 RAHAMIESMV---DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPD 290

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
           ++T+NIL+ G C+    ++A  L  EM     ++PDV+++  LIDG         A    
Sbjct: 291 KVTFNILIAGACKAGNFEQASALFEEMVAK-NLQPDVMTFGALIDGLCKAGQVEAARDIL 349

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
           + M   G+ P  ++Y  L+     S + + A +  +EM+    V  D + +  LV   CR
Sbjct: 350 DLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVP-DSITYGSLVYALCR 408

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
               ++A +++  +K  G+ P+  TY  L +G+  + K  +A+ + +E+
Sbjct: 409 ASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEM 457



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 162/401 (40%), Gaps = 50/401 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PDT  ++ +++     G+  +   +FD M   G  P+V+TYN ++    +A +      
Sbjct: 178 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 237

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++E +++ G+T  + T+  LV A+                       CK  R        
Sbjct: 238 MIESMVDKGVTPDVITYSVLVDAF-----------------------CKASRV------- 267

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                     DE  E L     +  +     P    P+   +  L+ G    G       
Sbjct: 268 ----------DEALELL-----HGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASA 312

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      PD +T+  ++  L KAG ++ AR +L  M  +GVP N +TYN L+ 
Sbjct: 313 LFEEMVAKN---LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVH 369

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+  +I++A + L EM     + PD ++Y  L+        +  AL   +E+++ G  
Sbjct: 370 GLCKSGRIEEACQFLEEMVSSGCV-PDSITYGSLVYALCRASRTDDALQLVSELKSFGWD 428

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++Y  L+     S + + A  V +EM+     + D   +     G  R G +     
Sbjct: 429 PDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGH-QPDSFTFAACFSGLHRSGNLAGTME 487

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++  +   G  P+  T  S+ + +  + K  +   + KE +
Sbjct: 488 LLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 123/299 (41%), Gaps = 56/299 (18%)

Query: 254 YTTVVSALVKAGSMDRARQVL-AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           Y  V+ +L +AG   RA ++   EM R GV    +TYN ++ G C+   +    EL  E+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            +     PDVV+YN LID      D   A     +M +RG  P  ++Y+ L+       +
Sbjct: 64  VERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR 122

Query: 373 PKLANKVFDEM------------------------------------LRDP--RVKVDIV 394
              A ++  EM                                    LRD   RV  D V
Sbjct: 123 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 182

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            ++ L++G C+ G ++EA  + + M   G+ PNV TY +L NG+  A K   A  + + +
Sbjct: 183 TFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESM 242

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            ++                 + PD      L D   +A+   +ALE++  M   G  PN
Sbjct: 243 VDK----------------GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN 285



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 3/141 (2%)

Query: 322 VVSYNILIDGFILIDDSAGALTFF-NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           V  YNI++       D+A AL  F  EM   G+APT ++Y T++     S+      ++F
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +E++       D+V +N L++  C+ G +EEA+R+   M   G  PNV TY  L NG+  
Sbjct: 61  EELVERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCK 119

Query: 441 ARKPGEALLLWKEI-KERCEV 460
             +  EA  L +E+ ++ C+V
Sbjct: 120 VGRIDEARELIQEMTRKSCDV 140



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/264 (18%), Positives = 99/264 (37%), Gaps = 57/264 (21%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           +  + +PD   + A+++     G+ +    + D M   G  P+V+TYN ++    ++ R 
Sbjct: 318 VAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRI 377

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                 LE ++  G      T+ SLV A            + +A R    D  +++ EL 
Sbjct: 378 EEACQFLEEMVSSGCVPDSITYGSLVYA------------LCRASR--TDDALQLVSEL- 422

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--PNSRIYTTLMKGYMNEG 227
                                                K+F   P++  Y  L+ G    G
Sbjct: 423 -------------------------------------KSFGWDPDTVTYNILVDGLWKSG 445

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           +    + +L  M  +      PD  T+    S L ++G++    ++L  +   G+  +  
Sbjct: 446 KTEQAITVLEEMVGK---GHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDAT 502

Query: 288 TYNILLKGYCQQLQIDKAKELLRE 311
           T + +L   C+  ++D  K +++E
Sbjct: 503 TCSSILDWVCRSGKLDDVKAMIKE 526



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 13/119 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V  ++ +V  L  SG              ++   +F +  + S   PD+  Y ++
Sbjct: 356 GVPPNVVTYNALVHGLCKSGR-------------IEEACQFLEEMVSSGCVPDSITYGSL 402

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           + A     +    LQL  ++  FG  PD +TYN+++    ++ +    + VLE ++  G
Sbjct: 403 VYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKG 461


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 212/484 (43%), Gaps = 86/484 (17%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVL 94
           +VKRV  F          P+   YNA++++   L K +KF +   LFD+M + G +P+ +
Sbjct: 354 LVKRVVDFG-------VSPNLFVYNALIDS---LCKGRKFHEAELLFDRMGKIGLRPNDV 403

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           TY+++I +  R  +    +  L  +++ G+ L +  + SL+  +  FGD+  AE  +  M
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
                                                    IN   EP ++         
Sbjct: 464 -----------------------------------------INKKLEPTVVT-------- 474

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            YT+LM GY ++G+++  +R+   M  +      P   T+TT++S L +AG +  A ++ 
Sbjct: 475 -YTSLMGGYCSKGKINKALRLYHEMTGK---GIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM    V  NR+TYN++++GYC++  + KA E L+EM +   I PD  SY  LI G  L
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG-IVPDTYSYRPLIHGLCL 589

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
              ++ A  F + +        +I YT L+  F    + + A  V  EM++   V +D+V
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRG-VDLDLV 648

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK-E 453
            + +L++G  +    +    +++ M + G  P+   Y S+ +  S      EA  +W   
Sbjct: 649 CYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLM 708

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           I E C                  P+E    A+ +   +A F  +A  + + M+     PN
Sbjct: 709 INEGC-----------------VPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPN 751

Query: 514 KTKY 517
           +  Y
Sbjct: 752 QVTY 755



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/529 (23%), Positives = 220/529 (41%), Gaps = 81/529 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVV--VKRVRKFS------DPDIVS 52
           +L  G     K W  V  +   +G D   + V    +V  + +V++F       D  +  
Sbjct: 267 VLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCL 326

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
              P  AA ++++      GK ++ L L  ++ +FG  P++  YN +I    +  + H  
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             + +R+ ++G+     T+  L+  +   G L+ A + +                     
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFL--------------------- 425

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                        E+ +  L  S+ P                 Y +L+ G+   G +S  
Sbjct: 426 ------------GEMVDTGLKLSVYP-----------------YNSLINGHCKFGDISAA 456

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
               G M    +    P  VTYT+++      G +++A ++  EMT  G+  +  T+  L
Sbjct: 457 E---GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTL 513

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L G  +   I  A +L  EMA+   ++P+ V+YN++I+G+    D + A  F  EM  +G
Sbjct: 514 LSGLFRAGLIRDAVKLFNEMAE-WNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG 572

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P   SY  L+    L+ Q   A KVF + L     +++ + +  L+ G+CR G +EEA
Sbjct: 573 IVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEA 631

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALL-LWKEIKERCEVKKEGVNADSDL 471
             + + M + G   ++  YG L +G SL  K  +    L KE+ +R              
Sbjct: 632 LSVCQEMVQRGVDLDLVCYGVLIDG-SLKHKDRKLFFGLLKEMHDR-------------- 676

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              LKPD+ +  ++ D   +   F++A  I   M   G  PN+  Y  +
Sbjct: 677 --GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAV 723



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  L++ Y+   RV D V +   M  +   +  P+  T + ++  LVK      A ++  
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKV--SLLPEVRTLSALLHGLVKFRHFGLAMELFN 216

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M  +G+  +   Y  +++  C+   + +AKE++  M +    + ++V YN+LIDG    
Sbjct: 217 DMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM-EATGCDVNIVPYNVLIDGLCKK 275

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+    ++  + + P  ++Y TL+       + ++  ++ DEML   R      A
Sbjct: 276 QKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEML-CLRFSPSEAA 334

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            + LVEG  + G +EEA  +++R+ + G  PN+  Y +L + +   RK  EA LL+
Sbjct: 335 VSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLF 390



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 111/231 (48%), Gaps = 13/231 (5%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLG-AMRRQEDNAS---HPDHVTYTTVVSALVK 263
           +  P  R  + L+ G +         R  G AM    D  S    PD   YT V+ +L +
Sbjct: 187 SLLPEVRTLSALLHGLVK-------FRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCE 239

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              + RA++++A M   G   N + YN+L+ G C++ ++ +A  + +++A    ++PDVV
Sbjct: 240 LKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGK-DLKPDVV 298

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  L+ G   + +    L   +EM     +P++ + ++L++      + + A  +   +
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           + D  V  ++  +N L++  C+     EA+ + +RM + G  PN  TY  L
Sbjct: 359 V-DFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSIL 408



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 21/258 (8%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           +++L++ Y +  ++     + + M     + P+V + + L+ G +       A+  FN+M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
            + GI P    YT ++++         A ++   M       V+IV +N+L++G C+   
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM-EATGCDVNIVPYNVLIDGLCKKQK 277

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANG-----------------ISLARKPGEALL-- 449
           V EA  I + +      P+V TY +L  G                 + L   P EA +  
Sbjct: 278 VWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSS 337

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L + +++R ++++        +   + P+  + +AL D   +   F +A  +   M + G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397

Query: 510 IPPNKTKYKKIYVEMHSR 527
           + PN   Y  I ++M  R
Sbjct: 398 LRPNDVTY-SILIDMFCR 414


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 192/466 (41%), Gaps = 71/466 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YNAV+N     G+  +   +F++M   G  PD  TYN ++    R +       
Sbjct: 252 KPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKD 311

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +   +L  G++  + +F SL+      G L+ A    + M+                   
Sbjct: 312 IFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMK------------------- 352

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                               P++ IYT L+ GY   G +S+ + 
Sbjct: 353 -------------------------------TSGLVPDNVIYTILINGYCRNGMMSEALE 381

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  Q       D V Y T+++ L K   +  A  +  EM   GV  +  T+  L+ 
Sbjct: 382 IRDKMLEQ---GCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIH 438

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C++  + KA  L   M     I+PD+V+YNILIDGF    +   A   +NEM +R I 
Sbjct: 439 GHCKEGNMGKALSLFGIMT-QKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIF 497

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ISY  L+  +        A +++DEM+R   +K  +V  N +++GYCR G + +A  
Sbjct: 498 PNHISYAILVNGYCNLGFVSEAFRLWDEMIRKG-IKPTLVTCNTVIKGYCRSGDLSKADE 556

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
            + +M   G  P+  TY +L NG        +A  L  +++ +                 
Sbjct: 557 FLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETK----------------G 600

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L+PD    + + +   R    ++A  I+  M E GI P+++ Y  +
Sbjct: 601 LQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTL 646



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 175/379 (46%), Gaps = 45/379 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P + ++S+++     S  +G ++   ++         F D    S   PD   
Sbjct: 316 MLHRGVSPDLISFSSLI---GVSSRNGHLDQALMY---------FRDMK-TSGLVPDNVI 362

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV---FVL 116
           Y  ++N     G   + L++ D+M E G   DV+ YN ++  LC    +K LL     + 
Sbjct: 363 YTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLC----KKKLLADANALF 418

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++E G+     TF +L+  +   G++  A ++   M +       +   + ++ +   
Sbjct: 419 DEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKT 478

Query: 177 NEGDDDD---DDEVFEKLLPNSINPS------------SEP-----PLLPKTFAPNSRIY 216
            E +  +   ++ +  K+ PN I+ +            SE       ++ K   P     
Sbjct: 479 TEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTC 538

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            T++KGY   G +S     LG M  +      PD +TY T+++  VK   MD+A  ++ +
Sbjct: 539 NTVIKGYCRSGDLSKADEFLGKMISE---GVGPDSITYNTLINGFVKGEYMDKAFFLINK 595

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  + +TYN++L G+C+Q ++ +A+ +LR+M +   I+PD  +Y  LI+G++  D
Sbjct: 596 METKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERG-IDPDRSTYTTLINGYVSQD 654

Query: 337 DSAGALTFFNEMRARGIAP 355
           +   A  F +EM  RG  P
Sbjct: 655 NLKEAFRFHDEMLQRGFVP 673



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 139/365 (38%), Gaps = 82/365 (22%)

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY--MNEGRVSDTVRMLGAMRRQE------ 243
           L N  NP+ EP     +  P+S +   ++     +   R+SD   ++  M R+       
Sbjct: 43  LENCQNPNQEPT---SSAPPDSFLVEKILLNLRRVRSKRLSDAQTLILRMIRRSGVSRVE 99

Query: 244 --------DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                    +    D++ +  ++ + V+A  ++        + R G   +    N LL G
Sbjct: 100 IVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGG 159

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL---IDDSAGALTFFNEMRARG 352
             +   +D A E+  E+A    IE +V + NI+++       IDD      F  +M  +G
Sbjct: 160 LVKMGWVDLAWEVYNEIARSG-IELNVYTLNIMVNALCKDHKIDDVK---PFLIDMEQKG 215

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I             FA                       DIV +N L+  YCR GL+ EA
Sbjct: 216 I-------------FA-----------------------DIVTYNTLINAYCREGLLGEA 239

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             ++  M   G  P + TY ++ NG+    K G              V+ +GV  +  L 
Sbjct: 240 FEVMNSMSGKGLKPTLFTYNAVINGLC---KKGRY------------VRAKGV-FNEMLS 283

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             L PD    + L     R   F +A +I + M   G+ P+   +  + + + SR   + 
Sbjct: 284 IGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSL-IGVSSR---NG 339

Query: 533 HASQA 537
           H  QA
Sbjct: 340 HLDQA 344


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 185/439 (42%), Gaps = 78/439 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +  + TVV+ L   GD          D+ +  ++K     I    + D   
Sbjct: 195 MVARGCQPDLFTYGTVVNGLCKRGD---------IDLALSLLKKMEKGKI----EADVVI 241

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++A  N       L LF +M   G +P+V+TYN +I+      R      +L  ++
Sbjct: 242 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 301

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G L  AE +   M +   D        D+  YSS   G 
Sbjct: 302 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-------DIFTYSSLINGF 354

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D+   +FE              ++ K   PN   Y TL+KG+    RV + + +
Sbjct: 355 CMHDRLDEAKHMFE-------------LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 401

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         + VTY T++  L +AG  D A+++  +M   GVP + ITY+ILL G
Sbjct: 402 F---REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 458

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +++KA  ++ E    +K+EPD+ +YNI+I+G             F  +  +G+ P
Sbjct: 459 LCKYGKLEKAL-VVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 517

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I YTT++  F                                    CR GL EEA  +
Sbjct: 518 NVIIYTTMISGF------------------------------------CRKGLKEEADAL 541

Query: 416 IERMKENGFYPNVATYGSL 434
              MKE+G  PN  TY +L
Sbjct: 542 FREMKEDGTLPNSGTYNTL 560



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 199/436 (45%), Gaps = 53/436 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD    +++LN   +  +  + + L DQM     +P+ +T+N +I      ++    V 
Sbjct: 131 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 190

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R++  G    + T+ ++V      GD+++A ++++ M +G+ +   +I    ++   
Sbjct: 191 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 250

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +    +D             ++N  +E     K   PN   Y +L++   N GR SD  R
Sbjct: 251 NYKNVND-------------ALNLFTEMD--NKGIRPNVVTYNSLIRCLCNYGRWSDASR 295

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT++ ++ A VK G +  A ++  EM +  +  +  TY+ L+ 
Sbjct: 296 LLSDMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 352

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++D+AK +  E+       P+VV+YN LI GF         +  F EM  RG+ 
Sbjct: 353 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 411

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
              ++Y TL++    +    +A K+F +M+ D                            
Sbjct: 412 GNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVV 471

Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                  +++ DI  +N+++EG C+ G VE+   +   +   G  PNV  Y ++ +G   
Sbjct: 472 FEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCR 531

Query: 441 ARKPGEALLLWKEIKE 456
                EA  L++E+KE
Sbjct: 532 KGLKEEADALFREMKE 547



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 175/405 (43%), Gaps = 61/405 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A A + K    + L ++M       D+ +YN++I    R S+  L + V
Sbjct: 62  PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 121

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  Y     +  A  +V  M                     
Sbjct: 122 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM--------------------- 160

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + PN+  + TL+ G     + S+ V +
Sbjct: 161 -----------------------------FVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 191

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M  +      PD  TY TVV+ L K G +D A  +L +M +  + A+ + Y  ++  
Sbjct: 192 IDRMVAR---GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 248

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C    ++ A  L  EM D+  I P+VV+YN LI         + A    ++M  R I P
Sbjct: 249 LCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 307

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             ++++ L+ AF    +   A K++DEM++   DP    DI  ++ L+ G+C    ++EA
Sbjct: 308 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEA 363

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           K + E M     +PNV TY +L  G   A++  E + L++E+ +R
Sbjct: 364 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 408



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 132/342 (38%), Gaps = 56/342 (16%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           ++ D V + G M +       P  V +  ++SA+ K    D    +   M  + +  +  
Sbjct: 44  KLDDAVDLFGEMVQSR---PLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLY 100

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDA------------------------------- 316
           +YNIL+  +C++ Q+  A  +L +M                                   
Sbjct: 101 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 160

Query: 317 ---KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
              + +P+ V++N LI G  L + ++ A+   + M ARG  P   +Y T++         
Sbjct: 161 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 220

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
            LA  +  +M    +++ D+V +  +++  C    V +A  +   M   G  PNV TY S
Sbjct: 221 DLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 279

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L   +    +  +A  L  ++ ER                 + P+     AL D  V+  
Sbjct: 280 LIRCLCNYGRWSDASRLLSDMIER----------------KINPNVVTFSALIDAFVKEG 323

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRMFTSKH 533
              +A ++   M +  I P+   Y  +     MH R+  +KH
Sbjct: 324 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 365



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           +S N+L+D  + +DD   A+  F EM      P+ + +  L+ A A  ++  L   +  E
Sbjct: 35  LSRNVLLD--LKLDD---AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISL-GE 88

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            +++ R+  D+ ++N+L+  +CR   +  A  ++ +M + G+ P++ T  SL NG    +
Sbjct: 89  RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 148

Query: 443 KPGEALLLWKEI 454
           +  EA+ L  ++
Sbjct: 149 RISEAVALVDQM 160


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 141/553 (25%), Positives = 235/553 (42%), Gaps = 88/553 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G +P V  +  V+  L           V   D     +R  +    V    P++  
Sbjct: 199 MLSKGVIPTVYTFGVVMKALCM---------VNEVDNACSLLRDMTKHGCV----PNSVV 245

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++A +   +  + L+L ++M   G  PDV T+N +I    R +R H    +++R+L
Sbjct: 246 YQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRML 305

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G T    T+  L+      G ++ A+ ++  +     DV   I    L +   ++   
Sbjct: 306 FRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT-PNDVHFTI----LINGYVKSGRL 360

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           D+ +  +++K++ N   P          F  N+ I+    KG M  G   D V  + A  
Sbjct: 361 DEANAFLYDKMIKNGCRPD--------VFTFNTLIHGLCKKGLM--GSAVDMVNDMSA-- 408

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               N   P+ +TYTT++    K   ++ A  VL EM+  G   N + YN+LL+  C+  
Sbjct: 409 ----NGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNG 464

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ KA ++L EM+D    +PD+ ++N LI G   +D    AL  + +M   G+    ++Y
Sbjct: 465 KVPKALDMLGEMSDKG-CKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTY 523

Query: 361 TTLMKAF----ALSSQPKLAN-------------------------------KVFDEMLR 385
            TL+ AF    A+    KL N                                +FDEM+R
Sbjct: 524 NTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVR 583

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              V  +I + N+L+ G CR+G V  A  ++  M   G  P+V TY SL NG+       
Sbjct: 584 KDLVPSNI-SCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIR 642

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA-LEIVAC 504
           EA  L+ ++      + EG+          +PD    + L     RA  F  A L ++  
Sbjct: 643 EAFNLFNKL------QAEGI----------QPDAITYNTLICWHCRAGMFDDAYLLLLRG 686

Query: 505 MEEHGIPPNKTKY 517
           +E   IP + T Y
Sbjct: 687 VENAFIPNDVTWY 699



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 117/322 (36%), Gaps = 55/322 (17%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           ++  +MK Y          RML  M+        P   +Y  V+  LV A     A  V 
Sbjct: 139 LFICIMKYYGRANLPGQATRMLLDMKGVY--CCEPTFKSYNVVLDILVSANCPSVAANVF 196

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM   GV     T+ +++K  C   ++D A  LLR+M     + P+ V Y  LI     
Sbjct: 197 YEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCV-PNSVVYQTLIHALSK 255

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            D    AL    EM   G  P                                    D+ 
Sbjct: 256 RDRVNEALKLLEEMFLMGCLP------------------------------------DVD 279

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +N ++ G CR+  + E  ++++RM   GF PN  TYG L NG+    K  EA +L  ++
Sbjct: 280 TFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKV 339

Query: 455 KERCEVK---------KEG----VNA---DSDLPPPLKPDEELLDALADICVRAAFFRKA 498
               +V          K G     NA   D  +    +PD    + L     +      A
Sbjct: 340 PTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSA 399

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
           +++V  M  +G  PN   Y  +
Sbjct: 400 VDMVNDMSANGCTPNLITYTTL 421



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 122/277 (44%), Gaps = 19/277 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   YN +L A    GK  K L +  +M + G KPD+ T+N +I    +  RK   + + 
Sbjct: 449 NIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALY 508

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +L  G+     T+ +L+ A++  G ++ A  +V  M         + R   L++ +  
Sbjct: 509 RDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDM---------LFRGCPLDEITY- 558

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                +   + F KL            ++ K   P++     L+ G    G+V + + +L
Sbjct: 559 -----NGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELL 613

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              R        PD VTY ++++ L K G++  A  +  ++   G+  + ITYN L+  +
Sbjct: 614 ---RDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWH 670

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           C+    D A  LL    ++A I  DV  Y IL+  FI
Sbjct: 671 CRAGMFDDAYLLLLRGVENAFIPNDVTWY-ILVSNFI 706


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/552 (23%), Positives = 234/552 (42%), Gaps = 77/552 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF-GAKPDVLTYNVMIK-LCARASRKHLLV 113
           P+   YN V+N         K  ++  +M +     PD++TY+ +I   C +        
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLED 172
            + E +   G+   + T+ S+V                   R+G+ D  C+++RE+ L+ 
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLC---------------RDGKMDRACEMVREMKLKG 111

Query: 173 YSSE------------NEGDDDDDDEVFEKLLPNS--INPSSEPPLLPK----------- 207
              +            N    D+  ++++++L +S  ++  S   L+             
Sbjct: 112 VEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAY 171

Query: 208 ------------TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                        + P+   YT L+ G+   G +   ++MLG M   E     P+ VTY+
Sbjct: 172 ELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM---EGRKCVPNVVTYS 228

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           +++  L KAG +D+A  +   MT  G   N +TY  L+ G C   ++D A+ L+ EM   
Sbjct: 229 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT 288

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
                D VSYN L+DG+  +     A   F EM A+   P +I+YT L++ F  +S+ + 
Sbjct: 289 C-CPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEE 347

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A  + + M     +  D+V ++++V GY R     EA   I+ M      PN  TY SL 
Sbjct: 348 ARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLI 407

Query: 436 NGISLARKPGEALLLWKEIKE----RCEVKKEGVNADSDLPPPLKPDEELLD-------- 483
           +G+  A +   A+ + K + +       +  EG+         L   EE+++        
Sbjct: 408 DGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVG 467

Query: 484 ----ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
                +  +C R     +A +++  M  HG+ P    Y  + +E  SR    + A +  +
Sbjct: 468 TFNSVIGALC-RLGDMDEAWKLLVAMAAHGLEPGMVTYTTL-LEGFSRTGRMEIAYELFE 525

Query: 540 DRRRERKRAAEA 551
             RR+ K+++ A
Sbjct: 526 VMRRKAKKSSSA 537



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 196/440 (44%), Gaps = 39/440 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P V  +++VV  L   G           D   + VR+     +    +PD   ++
Sbjct: 74  RDGMAPDVVTYTSVVDGLCRDGK---------MDRACEMVREMKLKGV----EPDKFTFS 120

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RASRKHLLVFVLERI 119
           A++    N  K  + L+L+ ++     + D ++ + +I  LC   R    + L   +E  
Sbjct: 121 ALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMR 180

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            +      + T+ +L+  +   G+LE A  ++  M EGR+ V  ++    L  +     G
Sbjct: 181 EDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM-EGRKCVPNVVTYSSLL-HGLCKAG 238

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D D   ++F ++               K   PN   YTTL+ G     +V D  R+L  M
Sbjct: 239 DLDQALDLFRRMTS-------------KGCVPNVVTYTTLIHGLCAAHKV-DAARLL--M 282

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                     D V+Y  ++    + G ++ A+Q+  EM       +RITY  L++G+C  
Sbjct: 283 DEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNA 342

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++++A+ LL  M   A I+PDVV+Y+I++ G+        A  F  EM AR +AP  ++
Sbjct: 343 SRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 402

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y++L+     + +   A +V   +      K D+V + +++EG C     EEA  ++E M
Sbjct: 403 YSSLIDGLCKAGRVNHAMEVLKNV-----DKPDVVTYTIVIEGLCGTDRTEEALTLLEEM 457

Query: 420 KENGFYPNVATYGSLANGIS 439
                 P+V T+ S+   + 
Sbjct: 458 VNKRVEPSVGTFNSVIGALC 477



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 130/251 (51%), Gaps = 6/251 (2%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN R Y  ++ G       S    +L  MR  +  +  PD VTY+TV++   K G MDR
Sbjct: 6   APNERTYNVVVNGLCKARLTSKAYEVLKEMR--DGKSVAPDLVTYSTVINGFCKQGEMDR 63

Query: 270 ARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           A ++L EM TR G+  + +TY  ++ G C+  ++D+A E++REM     +EPD  +++ L
Sbjct: 64  ACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKG-VEPDKFTFSAL 122

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD--EMLRD 386
           I G+        AL  + E+         +S + L+       +   A ++F   EM  D
Sbjct: 123 ITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMRED 182

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
              K D+V +  L++G+C+ G +E+A +++  M+     PNV TY SL +G+  A    +
Sbjct: 183 GAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQ 242

Query: 447 ALLLWKEIKER 457
           AL L++ +  +
Sbjct: 243 ALDLFRRMTSK 253



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 189/443 (42%), Gaps = 63/443 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y A+++     G  +K +++   M      P+V+TY+ ++    +A      + 
Sbjct: 186 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 245

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +  R+   G    + T+ +L+        ++ A  ++  M         +     L+ Y 
Sbjct: 246 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYC 305

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  ++  ++F+++               K+  P+   YT L++G+ N  R+ +   
Sbjct: 306 --RLGRIEEAKQLFKEMAA-------------KSCLPDRITYTCLVRGFCNASRLEEARF 350

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M+        PD VTY+ VV+   +A     A + + EM    V  N +TY+ L+ 
Sbjct: 351 LLENMKTAA--GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLID 408

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM------ 348
           G C+  +++ A E+L+ +      +PDVV+Y I+I+G    D +  ALT   EM      
Sbjct: 409 GLCKAGRVNHAMEVLKNVD-----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVE 463

Query: 349 -----------------------------RARGIAPTKISYTTLMKAFALSSQPKLANKV 379
                                         A G+ P  ++YTTL++ F+ + + ++A ++
Sbjct: 464 PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 523

Query: 380 FDEMLRDPR---VKVDIV---AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           F+ M R  +      ++V   A++ L+ G C+   +++A  ++E ++     P      +
Sbjct: 524 FEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLA 583

Query: 434 LANGISLARKPGEALLLWKEIKE 456
           + +G+  A +  EA  L   I +
Sbjct: 584 IVDGLLRAGRTEEAGKLINSISK 606



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 15/240 (6%)

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           V  N  TYN+++ G C+     KA E+L+EM D   + PD+V+Y+ +I+GF    +   A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 342 LTFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
                EM  R G+AP  ++YT+++       +   A ++  EM +   V+ D   ++ L+
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREM-KLKGVEPDKFTFSALI 123

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            G+C    V+EA ++ + +  +    +  +  +L  G+   R+ GEA  L++E+    E+
Sbjct: 124 TGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEM----EM 179

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +++G           KPD     AL D   ++    KA++++  ME     PN   Y  +
Sbjct: 180 REDG---------AWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSL 230



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 109/239 (45%), Gaps = 15/239 (6%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           +F    I  +  P+   Y+++++     G+    +++   +     KPDV+TY ++I+  
Sbjct: 386 EFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIEGL 441

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
               R    + +LE ++   +   + TF S++ A    GD++ A  ++ AM     +   
Sbjct: 442 CGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 501

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           +     LE +S    G  +   E+FE +   +   SS   L+P+      + ++ L++G 
Sbjct: 502 VTYTTLLEGFS--RTGRMEIAYELFEVMRRKAKKSSSAANLVPE------QAFSALIRGL 553

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
                +   + ++  +R +E   +  D +    +V  L++AG  + A +++  ++++G+
Sbjct: 554 CKAREIDKAMAVVEELRSRECEPAEEDCL---AIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 177/392 (45%), Gaps = 62/392 (15%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P V TY ++I  C RA R  L    L  +++ G  +   T
Sbjct: 70  PAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAIT 129

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+                       + +C   R  D  D              V  +
Sbjct: 130 FTPLL-----------------------KGLCADKRTSDAMDI-------------VLRR 153

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +        +E   +P  F+     Y  L+KG  +E R  + + +L  M       S PD
Sbjct: 154 M--------TELGCIPDVFS-----YNNLLKGLCDENRSQEALELLHMMADDRGGGSPPD 200

Query: 251 HVTYTTVVSALVKAG--------SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            V+Y TV++   K G        +MD+A +VL  M + GV  + +TYN +L GYC   Q 
Sbjct: 201 VVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 260

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            +A   L++M  D  +EP+VV+Y+ L++       S  A   F+ M  RG+ P   +Y T
Sbjct: 261 KEAIGTLKKMRSDG-VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 319

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L++      +   + K+FD M+R   VK DI+ +N L++G C  G ++EA +++  M   
Sbjct: 320 LLQGHCKEGRVIESEKLFDLMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV 378

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           G  P++ TYG+L NG     +  +AL L+KE+
Sbjct: 379 GVKPDIVTYGTLINGYCRVSRMDDALALFKEM 410



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 194/418 (46%), Gaps = 44/418 (10%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE---FGAKP 91
            D+V++R+ +           PD  +YN +L    +  + ++ L+L   M +    G+ P
Sbjct: 147 MDIVLRRMTELG-------CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPP 199

Query: 92  DVLTYNVMI----------KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
           DV++YN ++          KL A+A  K +   VL  +++ G+     T+ S++  Y   
Sbjct: 200 DVVSYNTVLNGFFKEGIQTKLTAQAMDKAM--EVLNTMVKNGVMPDCMTYNSILHGYCSS 257

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
           G  + A   ++ MR    +   ++    L +Y  +N G   +  ++F+ +    + P   
Sbjct: 258 GQPKEAIGTLKKMRSDGVEP-NVVTYSSLMNYLCKN-GRSTEARKIFDSMTKRGLEP--- 312

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                     +   Y TL++G+  EGRV ++ ++   M R       PD +TY T++   
Sbjct: 313 ----------DIATYRTLLQGHCKEGRVIESEKLFDLMVRI---GVKPDIITYNTLIDGC 359

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
             AG MD A ++LA M  +GV  + +TY  L+ GYC+  ++D A  L +EM     + P+
Sbjct: 360 CLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG-VSPN 418

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           +++YNI++ G      +A A   +  +   G      +Y  ++     ++    A ++F 
Sbjct: 419 IITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQ 478

Query: 382 EM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            + L D  ++++   +N+++    + G ++EAK +      NG  P+V TY  +A  +
Sbjct: 479 NLCLTD--LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 534



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 186/402 (46%), Gaps = 14/402 (3%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P    Y  ++  C   G+          + + G + D +T+  ++K LCA       +  
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL R+ E+G    + ++ +L+         + A  ++  M + R          D+  Y+
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGG----SPPDVVSYN 205

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           +   G   +   +  KL   +++ + E    ++     P+   Y +++ GY + G+  + 
Sbjct: 206 TVLNGFFKEG--IQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 263

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +   G +++   +   P+ VTY+++++ L K G    AR++   MT+ G+  +  TY  L
Sbjct: 264 I---GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 320

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L+G+C++ ++ ++++L   M     ++PD+++YN LIDG  L      A      M + G
Sbjct: 321 LQGHCKEGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 379

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++Y TL+  +   S+   A  +F EM+    V  +I+ +N++++G         A
Sbjct: 380 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGLFHTRRTAAA 438

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           K +   + ++G    ++TY  + +G+       EAL +++ +
Sbjct: 439 KELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 480



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 138/316 (43%), Gaps = 39/316 (12%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R       P   TY  ++    +AG +D     L  + + G   + IT+  LLKG C 
Sbjct: 80  MARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCA 139

Query: 299 QLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---RARGIA 354
             +   A ++ LR M +   I PDV SYN L+ G    + S  AL   + M   R  G  
Sbjct: 140 DKRTSDAMDIVLRRMTELGCI-PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSP 198

Query: 355 PTKISYTTLMKAFALSS-QPKL-------ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           P  +SY T++  F     Q KL       A +V + M+++  V  D + +N ++ GYC  
Sbjct: 199 PDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNG-VMPDCMTYNSILHGYCSS 257

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------- 457
           G  +EA   +++M+ +G  PNV TY SL N +    +  EA  ++  + +R         
Sbjct: 258 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY 317

Query: 458 -------CEVKKEGVNADSD------LPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
                  C   KEG   +S+      +   +KPD    + L D C  A    +A +++A 
Sbjct: 318 RTLLQGHC---KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 374

Query: 505 MEEHGIPPNKTKYKKI 520
           M   G+ P+   Y  +
Sbjct: 375 MVSVGVKPDIVTYGTL 390



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/333 (19%), Positives = 138/333 (41%), Gaps = 67/333 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+V  +S++++ L  +G     E+ K+FD + KR             +PD A 
Sbjct: 270 MRSDGVEPNVVTYSSLMNYLCKNGRS--TEARKIFDSMTKR-----------GLEPDIAT 316

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L      G+  +  +LFD M   G KPD++TYN +I  C  A +      +L  ++
Sbjct: 317 YRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 376

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            +G+   + T+ +L+  Y                       C++ R              
Sbjct: 377 SVGVKPDIVTYGTLINGY-----------------------CRVSRM------------- 400

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            DD   +F++++ + +             +PN   Y  +++G  +  R +    +  ++ 
Sbjct: 401 -DDALALFKEMVSSGV-------------SPNIITYNIILQGLFHTRRTAAAKELYVSIT 446

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   + +  +  TY  ++  L K    D A ++   +    +     T+NI++    +  
Sbjct: 447 K---SGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCG 503

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           ++D+AK+L    + +  + PDV +Y+++ +  I
Sbjct: 504 RMDEAKDLFAAHSANGLV-PDVRTYSLMAENLI 535


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 205/463 (44%), Gaps = 73/463 (15%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G LP  +++  ++        DG +E V    + V + + F           D A   
Sbjct: 178 RGGLLPDARSFRALI---VGCCRDGRMEEVDAL-LTVMQGQGFC---------LDNATCT 224

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERILE 121
            ++      G+ +   +LF +M E G  P+V+ Y   I  LC RA  K    +VLE ++ 
Sbjct: 225 VIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAF-YVLEEMVA 283

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+   + T  SL+                         +CKI              G  
Sbjct: 284 KGLKPNVYTHTSLI-----------------------NGLCKI--------------GWT 306

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           +    +F KL+ +S            ++ PN   YT ++ GY  EG+++    +LG M  
Sbjct: 307 ERAFRLFLKLIKSS------------SYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVE 354

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q      P+  TYTT++S   K GS + A +++ +M R G   N  TYN L+ G C++ +
Sbjct: 355 Q---GLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGK 411

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           I +A ++LR MA++  ++ D V+Y ++I           AL  FN M   G  P   +YT
Sbjct: 412 IQEAYKVLR-MANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYT 470

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           TL+  +    Q + + K+FD+ L    V      +  ++ GYC++G    A R+ ERM +
Sbjct: 471 TLIARYCQQRQMEESQKLFDKCLAIELVPTK-QTYTSMIAGYCKVGKSTSALRVFERMVQ 529

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----CEV 460
           NG   +  TYG+L +G+    +  EA  L++ + ++    CEV
Sbjct: 530 NGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEV 572



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 132/303 (43%), Gaps = 50/303 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLV 113
           KP+   + +++N    +G  ++  +LF ++ +  + KP+V TY VMI    +  +     
Sbjct: 287 KPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAE 346

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRR-----------DV 161
            +L R++E G+     T+ +L++ +   G    A  ++  MR EG +            +
Sbjct: 347 MLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGL 406

Query: 162 CK---------IIR-------ELDLEDYS---SEN--EGDDDDDDEVFEKLLPNSINPSS 200
           CK         ++R       +LD   Y+   +E+  +G      ++F ++  N  +P  
Sbjct: 407 CKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHP-- 464

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
                      +   YTTL+  Y  + ++ ++ ++       E     P   TYT++++ 
Sbjct: 465 -----------DIHTYTTLIARYCQQRQMEESQKLFDKCLAIE---LVPTKQTYTSMIAG 510

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
             K G    A +V   M + G  A+ ITY  L+ G C++ ++++A+ L   M D   +  
Sbjct: 511 YCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPC 570

Query: 321 DVV 323
           +V 
Sbjct: 571 EVT 573



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 22/304 (7%)

Query: 244 DNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           D  S P  H     +V+A  +AG +  A  ++ EM   G+P    T N +L+        
Sbjct: 106 DRGSLPMAHEAMRRMVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLRAGLDTGSF 165

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A+++   M     + PD  S+  LI G                M+ +G      + T 
Sbjct: 166 AYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTV 225

Query: 363 LMKAFALSSQPKLANKVFDEMLR--DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           +++ F    + +  +++F  ML    P   V+  AW   ++G C+   V++A  ++E M 
Sbjct: 226 IVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAW---IDGLCKRAYVKQAFYVLEEMV 282

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  PNV T+ SL NG+    K G     W E   R  +K   + + S      KP+  
Sbjct: 283 AKGLKPNVYTHTSLINGLC---KIG-----WTERAFRLFLKL--IKSSS-----YKPNVH 327

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
               +     +     +A  ++  M E G+ PN   Y  + +  H +  +   A +    
Sbjct: 328 TYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTL-ISGHCKEGSFNCAFELMNK 386

Query: 541 RRRE 544
            RRE
Sbjct: 387 MRRE 390


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 125/528 (23%), Positives = 232/528 (43%), Gaps = 58/528 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P    ++ ++  L   G  G  +++ L D +++R             +P    Y  +L A
Sbjct: 139 PDAYTYTPIIRGLCDRGRVG--DALALLDDMLQR-----------GCQPSVVTYTVLLEA 185

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
                   + + + D+M   G  P+++TYNV+I    R  R      +L R+   G    
Sbjct: 186 VCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYG---- 241

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRR-DVCKIIRELDLEDYSSENEGDDDDDDE 186
              FQ  + +Y          T+++ +   RR D  K++    ++     NE   D    
Sbjct: 242 ---FQPDIVSYT---------TVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVR 289

Query: 187 VFEK--LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
            F +  ++  +I    +  +      PN+ +   ++     +GRV D    L  M     
Sbjct: 290 FFCRGGMVERAIQVLQQ--MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGC 347

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N   PD ++YTTV+  L +AG  + A+++L EM R   P N +T+N  +   CQ+  I++
Sbjct: 348 N---PDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQ 404

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A +L+ E+  +      +V+YN L+ GF +      AL  FN +      P  I+YTTL+
Sbjct: 405 AIKLI-ELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLL 460

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                + +   A ++   M++     ++ V +N+LV  +C+ G VEEA  ++ +M E+G 
Sbjct: 461 TGLCHAERLDAAAELLAGMIQKD-CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGC 519

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            PN+ T+ +L +GI+      EAL L   +  +      GV+ D+              +
Sbjct: 520 TPNLITFNTLLDGITKDCNSEEALELLHGLVSK------GVSLDTI----------TYSS 563

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
           + D+  R     +A++++  +++ G+ P    Y KI   +  R  T +
Sbjct: 564 VVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQ 611



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 24/281 (8%)

Query: 238 AMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           A R  E ++S    PD    T ++  L + G    A +VL      G P +   YN L+ 
Sbjct: 58  AARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVA 117

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+  ++D A+ L+  M     + PD  +Y  +I G         AL   ++M  RG  
Sbjct: 118 GYCRYGRLDAARRLIASM----PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQ 173

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P+ ++YT L++A   SS    A  V DEM R      +IV +N+++ G CR G V++AK 
Sbjct: 174 PSVVTYTVLLEAVCKSSGFGEAMNVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAKE 232

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           I+ R+   GF P++ +Y ++  G+  AR+  +  +L+ E+     V K+ V         
Sbjct: 233 ILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEM-----VDKKCV--------- 278

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
             P+E   D L     R     +A++++  M +HG  PN T
Sbjct: 279 --PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTT 317



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+ G+  +GRV   + +   +         P+ +TYTT+++ L  A  +D A ++LA
Sbjct: 424 YNALVHGFCVQGRVDSALELFNNL------PCEPNTITYTTLLTGLCHAERLDAAAELLA 477

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M +   P N +T+N+L+  +CQ+  +++A EL+ +M +     P+++++N L+DG    
Sbjct: 478 GMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG-CTPNLITFNTLLDGITKD 536

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            +S  AL   + + ++G++   I+Y++++   +   + + A ++    ++D  ++  +  
Sbjct: 537 CNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQML-HAVQDMGMRPKVGM 595

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           +N ++   C+    ++A      M  NG  PN +TY  L  G++
Sbjct: 596 YNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLA 639



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/438 (20%), Positives = 161/438 (36%), Gaps = 83/438 (18%)

Query: 5   GYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSDPDIV 51
           G+ P + +++TV+  L A+              D   V +   FD++V   R F    +V
Sbjct: 241 GFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLV---RFFCRGGMV 297

Query: 52  S------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
                           P+T   N V+NA    G+        + M  +G  PD ++Y  +
Sbjct: 298 ERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTV 357

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
           ++   RA R      +L  ++         TF + +      G +E A  +++ M E   
Sbjct: 358 LRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGC 417

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
            V  +     +  +  +  G  D   E+F  L      P            PN+  YTTL
Sbjct: 418 SVGIVTYNALVHGFCVQ--GRVDSALELFNNL------PCE----------PNTITYTTL 459

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G  +  R+     +L  M +++      + VT+  +VS   + G ++ A +++ +M  
Sbjct: 460 LTGLCHAERLDAAAELLAGMIQKD---CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMME 516

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMAD------------------------- 314
            G   N IT+N LL G  +    ++A ELL  +                           
Sbjct: 517 HGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEE 576

Query: 315 ---------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
                    D  + P V  YN ++       ++  A+ FF  M + G  P + +Y  L++
Sbjct: 577 AIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIE 636

Query: 366 AFALSSQPKLANKVFDEM 383
             A     K A  V  E+
Sbjct: 637 GLAHEGLLKEARYVLSEL 654


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 211/473 (44%), Gaps = 42/473 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  ++T ++     G     E+VKLF        K  +  +     P+   +N V
Sbjct: 244 GVSPDVYLFTTAINAFCKGGK--VEEAVKLFS-------KMEEAGVA----PNVVTFNTV 290

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G+  +     ++M E G +P ++TY++++K   RA R     FVL+ + + G 
Sbjct: 291 IDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGF 350

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              +  + +L+ +++  G L  A  I   M      +        ++ Y     G  D+ 
Sbjct: 351 PPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC--KNGQADNA 408

Query: 185 DEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTTLMKG 222
           + + +++L    N +                          +L +  +P   + TTL+ G
Sbjct: 409 ERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISG 468

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
               G+ S  + +        +     D  T   ++  L +AG +D A ++  E+   G 
Sbjct: 469 LCKHGKHSKALELWFQFL---NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC 525

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             +R++YN L+ G C + ++D+A   L EM     ++PD  +Y+ILI G   ++    A+
Sbjct: 526 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG-LKPDNYTYSILICGLFNMNKVEEAI 584

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            F+++ +  G+ P   +Y+ ++     + + +   + FDEM+    V+ + V +N L+  
Sbjct: 585 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM-SKNVQPNTVVYNHLIRA 643

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           YCR G +  A  + E MK  G  PN ATY SL  G+S+  +  EA LL++E++
Sbjct: 644 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 696



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 114/488 (23%), Positives = 196/488 (40%), Gaps = 52/488 (10%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           FDVV K V             PD   +   +NA    GK ++ ++LF +M E G  P+V+
Sbjct: 238 FDVVCKGV------------SPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV 285

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           T+N +I       R        E+++E G+   + T+  LV              + +A 
Sbjct: 286 TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKG------------LTRAK 333

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--LLPKTFAPN 212
           R G  D   +++E+  + +       ++  D   E     S+N + E    ++ K  +  
Sbjct: 334 RIG--DAYFVLKEMTKKGFPPNVIVYNNLIDSFIE---AGSLNKAIEIKDLMVSKGLSLT 388

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           S  Y TL+KGY   G+  +  R+L  M     N +     ++T+V+  L      D A +
Sbjct: 389 SSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSHLMFDSALR 445

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            + EM    +         L+ G C+  +  KA EL  +  +   +  D  + N L+ G 
Sbjct: 446 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFV-VDTRTSNALLHGL 504

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                   A     E+  RG    ++SY TL+       +   A    DEM++   +K D
Sbjct: 505 CEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG-LKPD 563

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
              +++L+ G   M  VEEA +  +  K NG  P+V TY  + +G   A +  E    + 
Sbjct: 564 NYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFD 623

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E+                +   ++P+  + + L     R+     ALE+   M+  GI P
Sbjct: 624 EM----------------MSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 667

Query: 513 NKTKYKKI 520
           N   Y  +
Sbjct: 668 NSATYTSL 675



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +   P++  Y+ L+ G  N  +V + ++     +R   N   PD  TY+ ++    K
Sbjct: 555 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR---NGMLPDVYTYSVMIDGCCK 611

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A   +  ++   EM    V  N + YN L++ YC+  ++  A EL RE      I P+  
Sbjct: 612 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL-REDMKHKGISPNSA 670

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI G  +I     A   F EMR  G+ P    YT L+  +    Q      +  EM
Sbjct: 671 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 730

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
                V  + + + +++ GY R G V EA R++  M+E G  P+  TY     G
Sbjct: 731 -HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 783



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/499 (20%), Positives = 216/499 (43%), Gaps = 47/499 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVK---RVRK 44
           M  +G  P+V  ++TV+  L   G             + G   ++  + ++VK   R ++
Sbjct: 275 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 334

Query: 45  FSDPDIVSDSK------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             D   V          P+   YN ++++    G   K +++ D M   G      TYN 
Sbjct: 335 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 394

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQS---LVAAYVGFGDLE--IAETIVQA 153
           +IK   +  +      +L+ +L +G  +   +F S   L+ +++ F      + E +++ 
Sbjct: 395 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 454

Query: 154 MREGRRDVCKIIRELDLEDYSSE---------NEG---DDDDDDEVFEKLLPNSINPSS- 200
           M  G   +  +I  L      S+         N+G   D    + +   L        + 
Sbjct: 455 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 514

Query: 201 --EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
             +  +L +    +   Y TL+ G   + ++ +    L  M ++      PD+ TY+ ++
Sbjct: 515 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR---GLKPDNYTYSILI 571

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
             L     ++ A Q   +  R G+  +  TY++++ G C+  + ++ +E   EM     +
Sbjct: 572 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK-NV 630

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +P+ V YN LI  +      + AL    +M+ +GI+P   +YT+L+K  ++ S+ + A  
Sbjct: 631 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 690

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+EM R   ++ ++  +  L++GY ++G + + + ++  M     +PN  TY  +  G 
Sbjct: 691 LFEEM-RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 749

Query: 439 SLARKPGEALLLWKEIKER 457
           +      EA  L  E++E+
Sbjct: 750 ARDGNVTEASRLLNEMREK 768



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 170/419 (40%), Gaps = 47/419 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G+  +  ++++V+  L          S  +FD  ++    F    ++ +  P    
Sbjct: 415 MLSIGFNVNQGSFTSVICLLC---------SHLMFDSALR----FVGEMLLRNMSPGGGL 461

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              +++     GK  K L+L+ Q    G   D  T N ++     A +      + + IL
Sbjct: 462 LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL 521

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             G  +   ++ +L++   G   L+ A   +  M         + R L  ++Y+      
Sbjct: 522 GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM---------VKRGLKPDNYTYSILIC 572

Query: 177 ---NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              N    ++  + ++    N         +LP  +      Y+ ++ G     R  +  
Sbjct: 573 GLFNMNKVEEAIQFWDDCKRNG--------MLPDVYT-----YSVMIDGCCKAERTEEGQ 619

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
                M  +      P+ V Y  ++ A  ++G +  A ++  +M   G+  N  TY  L+
Sbjct: 620 EFFDEMMSKN---VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 676

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           KG     ++++AK L  EM  +  +EP+V  Y  LIDG+  +           EM ++ +
Sbjct: 677 KGMSIISRVEEAKLLFEEMRMEG-LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 735

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            P KI+YT ++  +A       A+++ +EM R+  +  D + +   + GY + G V EA
Sbjct: 736 HPNKITYTVMIGGYARDGNVTEASRLLNEM-REKGIVPDSITYKEFIYGYLKQGGVLEA 793



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 30/271 (11%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVP---ANRITYNILLKGYCQQLQIDKAKELL 309
           +Y  ++  L+ A  +  AR VL  +    VP          + +      L +   +E+ 
Sbjct: 117 SYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEIR 176

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           R+M+D   +  +V       DG  L      AL  F  +  +G+ P+K +   L+ +   
Sbjct: 177 RKMSD---LLIEVYCTQFKRDGCYL------ALDVFPVLANKGMFPSKTTCNILLTSLVR 227

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +++ +   + FD + +   V  D+  +   +  +C+ G VEEA ++  +M+E G  PNV 
Sbjct: 228 ANEFQKCCEAFDVVCKG--VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV 285

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           T+ ++ +G+ +  +  EA +  +++ ER             + P L     L+  L    
Sbjct: 286 TFNTVIDGLGMCGRYDEAFMFKEKMVER------------GMEPTLITYSILVKGLT--- 330

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            RA     A  ++  M + G PPN   Y  +
Sbjct: 331 -RAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 360


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 185/439 (42%), Gaps = 78/439 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +  + TVV+ L   GD          D+ +  ++K     I    + D   
Sbjct: 211 MVARGCQPDLFTYGTVVNGLCKRGD---------IDLALSLLKKMEKGKI----EADVVI 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++A  N       L LF +M   G +P+V+TYN +I+      R      +L  ++
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G L  AE +   M +   D        D+  YSS   G 
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-------DIFTYSSLINGF 370

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D+   +FE              ++ K   PN   Y TL+KG+    RV + + +
Sbjct: 371 CMHDRLDEAKHMFE-------------LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         + VTY T++  L +AG  D A+++  +M   GVP + ITY+ILL G
Sbjct: 418 F---REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +++KA  ++ E    +K+EPD+ +YNI+I+G             F  +  +G+ P
Sbjct: 475 LCKYGKLEKAL-VVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I YTT++  F                                    CR GL EEA  +
Sbjct: 534 NVIIYTTMISGF------------------------------------CRKGLKEEADAL 557

Query: 416 IERMKENGFYPNVATYGSL 434
              MKE+G  PN  TY +L
Sbjct: 558 FREMKEDGTLPNSGTYNTL 576



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 199/436 (45%), Gaps = 53/436 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD    +++LN   +  +  + + L DQM     +P+ +T+N +I      ++    V 
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 206

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R++  G    + T+ ++V      GD+++A ++++ M +G+ +   +I    ++   
Sbjct: 207 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 266

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +    +D             ++N  +E     K   PN   Y +L++   N GR SD  R
Sbjct: 267 NYKNVND-------------ALNLFTEMD--NKGIRPNVVTYNSLIRCLCNYGRWSDASR 311

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT++ ++ A VK G +  A ++  EM +  +  +  TY+ L+ 
Sbjct: 312 LLSDMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++D+AK +  E+       P+VV+YN LI GF         +  F EM  RG+ 
Sbjct: 369 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
              ++Y TL++    +    +A K+F +M+ D                            
Sbjct: 428 GNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVV 487

Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                  +++ DI  +N+++EG C+ G VE+   +   +   G  PNV  Y ++ +G   
Sbjct: 488 FEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCR 547

Query: 441 ARKPGEALLLWKEIKE 456
                EA  L++E+KE
Sbjct: 548 KGLKEEADALFREMKE 563



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 178/405 (43%), Gaps = 61/405 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A A + K    + L ++M       D+ +YN++I    R S+  L + V
Sbjct: 78  PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  Y                  G+R    I   + L D   
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYC----------------HGKR----ISEAVALVD--- 174

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                       +    + PN+  + TL+ G     + S+ V +
Sbjct: 175 ---------------------------QMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 207

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M  +      PD  TY TVV+ L K G +D A  +L +M +  + A+ + Y  ++  
Sbjct: 208 IDRMVAR---GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 264

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C    ++ A  L  EM D+  I P+VV+YN LI         + A    ++M  R I P
Sbjct: 265 LCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 323

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             ++++ L+ AF    +   A K++DEM++   DP    DI  ++ L+ G+C    ++EA
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEA 379

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           K + E M     +PNV TY +L  G   A++  E + L++E+ +R
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 132/342 (38%), Gaps = 56/342 (16%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           ++ D V + G M +       P  V +  ++SA+ K    D    +   M  + +  +  
Sbjct: 60  KLDDAVDLFGEMVQSR---PLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLY 116

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDA------------------------------- 316
           +YNIL+  +C++ Q+  A  +L +M                                   
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176

Query: 317 ---KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
              + +P+ V++N LI G  L + ++ A+   + M ARG  P   +Y T++         
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
            LA  +  +M    +++ D+V +  +++  C    V +A  +   M   G  PNV TY S
Sbjct: 237 DLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L   +    +  +A  L  ++ ER                 + P+     AL D  V+  
Sbjct: 296 LIRCLCNYGRWSDASRLLSDMIER----------------KINPNVVTFSALIDAFVKEG 339

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRMFTSKH 533
              +A ++   M +  I P+   Y  +     MH R+  +KH
Sbjct: 340 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           +S N+L+D  + +DD   A+  F EM      P+ + +  L+ A A  ++  L   +  E
Sbjct: 51  LSRNVLLD--LKLDD---AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISL-GE 104

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            +++ R+  D+ ++N+L+  +CR   +  A  ++ +M + G+ P++ T  SL NG    +
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 164

Query: 443 KPGEALLLWKEI 454
           +  EA+ L  ++
Sbjct: 165 RISEAVALVDQM 176


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 185/399 (46%), Gaps = 26/399 (6%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           +K+ ++F         KP+   YN +++     GK ++   +F  M + G +PD  TYN 
Sbjct: 232 LKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNS 291

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
            I    +  R      ++ ++LE G+     T+ +L+  Y   GDL+ A      M    
Sbjct: 292 FISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMIS-- 349

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
           + +   +   +L  ++   EG   D D + ++             +  K   P++  +  
Sbjct: 350 KGIMASLVTYNLFIHALFMEGRMGDADNMIKE-------------MREKGMMPDAVTHNI 396

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ GY    R  D  R  G +         P  VTYT+++  L K   M  A  + +++ 
Sbjct: 397 LINGYC---RCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQ 453

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           + G+  + I +N L+ G+C    ID+A +LL+EM D+ K+ PD ++YN L+ G+      
Sbjct: 454 QEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM-DNMKVLPDEITYNTLMQGYCREGKV 512

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVA 395
             A    +EM+ RGI P  ISY TL+  ++     K A +V DEM+    DP     I+ 
Sbjct: 513 EEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDP----TILT 568

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           +N L++G C+    E A+ +++ M   G  P+ +TY S+
Sbjct: 569 YNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSI 607



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 179/396 (45%), Gaps = 22/396 (5%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLER 118
            +N ++N     GK KK  +    M   G KP+V+TYN +I   C R   +   V + + 
Sbjct: 218 TFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARV-IFQT 276

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           + + G+     T+ S ++     G LE A  ++  M EG      +     ++ Y   N+
Sbjct: 277 MKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYC--NK 334

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           GD D      ++++   I  S                Y   +     EGR+ D   M+  
Sbjct: 335 GDLDKAYAYRDEMISKGIMASL-------------VTYNLFIHALFMEGRMGDADNMIKE 381

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           MR +      PD VT+  +++   + G   RA  +L EM   G+    +TY  L+    +
Sbjct: 382 MREK---GMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGK 438

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + ++ +A  L  ++  +  + PD++ +N LIDG     +   A     EM    + P +I
Sbjct: 439 RNRMKEADALFSKIQQEGLL-PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEI 497

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y TLM+ +    + + A ++ DEM R   +K D +++N L+ GY + G +++A R+ + 
Sbjct: 498 TYNTLMQGYCREGKVEEARQLLDEMKRRG-IKPDHISYNTLISGYSKRGDMKDAFRVRDE 556

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           M   GF P + TY +L  G+   ++   A  L KE+
Sbjct: 557 MMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEM 592



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/453 (21%), Positives = 194/453 (42%), Gaps = 66/453 (14%)

Query: 15  TVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD-------IVSDSK--PDTAAYNAVL 65
           T+   LA + D    ++  +FD++V+   +   P+       ++ +    P+    N +L
Sbjct: 129 TIFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQML 188

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGI 124
           +    L + +    L+ +M     +  + T+N+MI  LC     K    F+   +  +G+
Sbjct: 189 SLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFI-GHMETLGV 247

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + T+ +++  +   G  + A  I Q M++                            
Sbjct: 248 KPNVVTYNTIIHGHCLRGKFQRARVIFQTMKD---------------------------- 279

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                                 K   P+   Y + + G   EGR+ +     G + +  +
Sbjct: 280 ----------------------KGLEPDCYTYNSFISGLCKEGRLEEAS---GLICKMLE 314

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+ VTY  ++      G +D+A     EM   G+ A+ +TYN+ +     + ++  
Sbjct: 315 GGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGD 374

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  +++EM +   + PD V++NILI+G+    D+  A    +EM  +GI PT ++YT+L+
Sbjct: 375 ADNMIKEMREKGMM-PDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLI 433

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                 ++ K A+ +F ++ ++  +  DI+ +N L++G+C  G ++ A ++++ M     
Sbjct: 434 YVLGKRNRMKEADALFSKIQQEGLLP-DIIVFNALIDGHCANGNIDRAFQLLKEMDNMKV 492

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            P+  TY +L  G     K  EA  L  E+K R
Sbjct: 493 LPDEITYNTLMQGYCREGKVEEARQLLDEMKRR 525



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 54/285 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +N ++N     G  K+   L D+M   G +P ++TY  +I +  + +R      +
Sbjct: 389 PDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADAL 448

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             +I + G+   +  F +L+  +   G+++ A               ++++E+D      
Sbjct: 449 FSKIQQEGLLPDIIVFNALIDGHCANGNIDRA--------------FQLLKEMD------ 488

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                         K+LP+ I                   Y TLM+GY  EG+V +  ++
Sbjct: 489 ------------NMKVLPDEIT------------------YNTLMQGYCREGKVEEARQL 518

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M+R+      PDH++Y T++S   K G M  A +V  EM   G     +TYN L++G
Sbjct: 519 LDEMKRR---GIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQG 575

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
            C+  + + A+ELL+EM     I PD  +Y  +I+    +DD  G
Sbjct: 576 LCKNQEGEHAEELLKEMVSKG-ITPDDSTYLSIIEAMETVDDLEG 619



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 25/259 (9%)

Query: 266 SMDRARQVLAEMTRIGVPANRITYNIL----LKGYCQQLQIDKAKELLREMADDAKIEPD 321
           S+D A   LA      +P+ + + N++    L   C    I     L R+  D AK    
Sbjct: 90  SLDLATSSLAICVLYRLPSPKPSINLIQRLILSPTCTNRTIFDELALARDRVD-AKT--- 145

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
            + +++L+  +  +     AL  F  ++ +G  P   +   ++  F   ++ ++A  ++ 
Sbjct: 146 TLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYA 205

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           EM R   ++  +  +N+++   C+ G +++AK  I  M+  G  PNV TY ++ +G  L 
Sbjct: 206 EMFR-MNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR 264

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
            K   A ++++ +K++                 L+PD    ++      +     +A  +
Sbjct: 265 GKFQRARVIFQTMKDK----------------GLEPDCYTYNSFISGLCKEGRLEEASGL 308

Query: 502 VACMEEHGIPPNKTKYKKI 520
           +  M E G+ PN   Y  +
Sbjct: 309 ICKMLEGGLVPNAVTYNAL 327


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 188/389 (48%), Gaps = 18/389 (4%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   YN +++   + G  +   +L  +M +     +V TY+ +IK   + ++      
Sbjct: 78  EPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYK 137

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VLE ++  G    +  F  ++  +    ++E A  + Q M E       +   + +   +
Sbjct: 138 VLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLA 197

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              + D+             S+   SE  +    + PN   ++TL+ G    G +   + 
Sbjct: 198 KIGKLDE-------------SLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALE 244

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           + G+M    +    P+  TYTT+++ L +A  + +AR++  +MT+  +P + + YN L+ 
Sbjct: 245 VFGSML---EAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 301

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++  +D+A++L REM+  A ++P +V++N LIDGF  +     A     EM  +G+A
Sbjct: 302 GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLA 361

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
               +Y  L+   + +++   A +V+ +M R+ +  +D V+    V G C+ G +++A  
Sbjct: 362 ADTCTYRILIAGLSRATKLDEALEVYKQM-REKKFLLDPVSCVSFVGGLCKTGNIDQAYA 420

Query: 415 IIERMKENGFYPNVATYGSLANG-ISLAR 442
           + E  +++G  PN  T+  L+   I L R
Sbjct: 421 VFEATRKSGAVPNPETFRILSESLIKLGR 449



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 184/401 (45%), Gaps = 22/401 (5%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL-CARASRKHLLVFVLER 118
           AY+ V+ + A  G   + L++F+ M      P ++TYNV+I   C        L      
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
             E  +     T+ +L++     G+ E A  ++  MR+  +++   +        S   E
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRD--KNIAANVFTYSSIIKSLVKE 129

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
              ++  +V E+++    NP          FA N      +M+G+    R ++  +    
Sbjct: 130 AKPEESYKVLEEMMAAGCNPD--------VFAFNG-----VMQGF---ARSNNMEKAREV 173

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT--RIGVPANRITYNILLKGY 296
            +   ++   PD+V+Y  ++  L K G +D + ++L+EM     G   N IT++ L+ G 
Sbjct: 174 YQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGL 233

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+  +++KA E+   M  +A  +P+  +Y  LI G    +    A   F +M    I P 
Sbjct: 234 CRTGELEKALEVFGSML-EAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPD 292

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y +L+  +        A K++ EM     ++  IV +N L++G+C++G +  A  ++
Sbjct: 293 AVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELV 352

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             M   G   +  TY  L  G+S A K  EAL ++K+++E+
Sbjct: 353 AEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREK 393



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 15/267 (5%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           Y  VV +L KAG + +A +V   M       + +TYN+L+   C   +  KA +L + M 
Sbjct: 13  YDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMK 72

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
            + ++EPD  +YN LI G     ++ GA    +EMR + IA    +Y++++K+    ++P
Sbjct: 73  REKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKP 132

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           + + KV +EM+       D+ A+N +++G+ R   +E+A+ + + M E+G+ P+  +Y  
Sbjct: 133 EESYKVLEEMMA-AGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L +G++   K  E+L +  E+  R           +   P +     L+  L     R  
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRA----------AGYVPNVITFSTLIHGL----CRTG 237

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKI 520
              KALE+   M E G  PNK  Y  +
Sbjct: 238 ELEKALEVFGSMLEAGCKPNKYTYTTL 264



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 126/249 (50%), Gaps = 4/249 (1%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y  L+    N G     + +  +M+R++     PD  TY T++S L  +G+ + A
Sbjct: 43  PSLVTYNVLINSRCNAGEFGKALDLFQSMKREKR--VEPDRWTYNTLISGLCSSGNTEGA 100

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R++L+EM    + AN  TY+ ++K   ++ + +++ ++L EM   A   PDV ++N ++ 
Sbjct: 101 RKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMA-AGCNPDVFAFNGVMQ 159

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRV 389
           GF   ++   A   +  M   G  P  +SY  L+   A   +   + K+  EM +R    
Sbjct: 160 GFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGY 219

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             +++ ++ L+ G CR G +E+A  +   M E G  PN  TY +L  G+  A K  +A  
Sbjct: 220 VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARE 279

Query: 450 LWKEIKERC 458
           L++++ + C
Sbjct: 280 LFEKMTQAC 288



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 70/370 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P V A++ V+   A S +             +++ R+     + S  KPD  +
Sbjct: 142 MMAAGCNPDVFAFNGVMQGFARSNN-------------MEKAREVYQHMVESGYKPDNVS 188

Query: 61  YNAVLNACANLGKPKKFLQLFDQ--MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
           Y+ +++  A +GK  + L++  +  M   G  P+V+T++ +I    R       + V   
Sbjct: 189 YHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGS 248

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +LE G      T+ +L+A       L  AE ++QA                         
Sbjct: 249 MLEAGCKPNKYTYTTLIAG------LCRAEKVIQA------------------------- 277

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                  E+FEK+    I              P++  Y +L+ GY   G + +  ++   
Sbjct: 278 ------RELFEKMTQACI-------------PPDAVAYNSLIAGYCKRGSMDEAEKLY-- 316

Query: 239 MRRQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            R     A   P  VT+ T++    K G + RA +++AEM   G+ A+  TY IL+ G  
Sbjct: 317 -REMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLS 375

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  ++D+A E+ ++M +  K   D VS    + G     +   A   F   R  G  P  
Sbjct: 376 RATKLDEALEVYKQMREK-KFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNP 434

Query: 358 ISYTTLMKAF 367
            ++  L ++ 
Sbjct: 435 ETFRILSESL 444



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 16/194 (8%)

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y+ ++         A AL  F  M++    P+ ++Y  L+ +   + +   A  +F  M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R+ RV+ D   +N L+ G C  G  E A++++  M++     NV TY S+   +    K
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
           P E+  + +E+                +     PD    + +     R+    KA E+  
Sbjct: 132 PEESYKVLEEM----------------MAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQ 175

Query: 504 CMEEHGIPPNKTKY 517
            M E G  P+   Y
Sbjct: 176 HMVESGYKPDNVSY 189


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 135/568 (23%), Positives = 227/568 (39%), Gaps = 83/568 (14%)

Query: 16  VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDP-DIVSDS------KPDTAAYNAVLNAC 68
           +V  +   G +  +  V+ F     R++ F D  D+VS+       + +T  YN +L   
Sbjct: 112 LVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVL 171

Query: 69  ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
           A   K K     + +M   G +PDV+T+N +I    RA +    V +LE +    +    
Sbjct: 172 AEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDE 231

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIRELDLEDYSSE 176
           TTF +L+  +V  G +E A  +   M E                 CK+ R  D   Y  +
Sbjct: 232 TTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQ 291

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSRIYTTLMKGYMNEGR 228
              D  + D V      N +  +            +L +   P+   Y+T++    N G 
Sbjct: 292 EIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGE 351

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           + +     G + +  D+   PD  T+ T++ AL     ++ A  +  E+T  G+  N  T
Sbjct: 352 LEEAK---GIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYT 408

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           +NIL+   C+      A  L  EM   +   PD V+YNILID        A AL    EM
Sbjct: 409 FNILINALCKVGDPHLAVRLFEEM-KSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG------ 402
              G   + ++Y T++       + + A +VFD+M     +  + + +N L++G      
Sbjct: 468 EVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQM-DVTGIGRNAITFNTLIDGLCNAER 526

Query: 403 -----------------------------YCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
                                        YC+ G + +A  I++ M  NGF  +V TY +
Sbjct: 527 IDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYAT 586

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L NG+  AR+   AL L + ++ +                 +KP  +  + +     R  
Sbjct: 587 LINGLCKARRTQAALKLLRGMRMK----------------GMKPTPKAYNPVIQSLFRGN 630

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIY 521
             R AL +   M E G PP+   YK ++
Sbjct: 631 NGRDALSLFREMTEVGGPPDAFTYKIVF 658



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 197/437 (45%), Gaps = 38/437 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P    +ST V+ L  +G      ++K+  ++++              +PD   Y+ V
Sbjct: 296 GFEPDRVTFSTFVNGLCQNGHVD--HALKVLGLMLQE-----------GCEPDVYTYSTV 342

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERILEMG 123
           +N   N G+ ++   + +QM + G  PD  T+N +I  LC     +  L    E  ++ G
Sbjct: 343 INCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVK-G 401

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           ++  + TF  L+ A    GD  +A  + + M+       ++   + +++  S  +     
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGK----- 456

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                   L  +++   E   +  +  P S + Y T++ G     R+ +   +   M   
Sbjct: 457 --------LAKALDLLKE---MEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQM--- 502

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           +      + +T+ T++  L  A  +D A +++ +M   G+  N +TYN +L  YC+Q  I
Sbjct: 503 DVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNI 562

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            KA ++L+ M  +   E DVV+Y  LI+G      +  AL     MR +G+ PT  +Y  
Sbjct: 563 SKAADILQTMTANG-FEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNP 621

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL-VEEAKRIIERMKE 421
           ++++    +  + A  +F EM  +     D   + ++  G CR G  ++EA   +  M +
Sbjct: 622 VIQSLFRGNNGRDALSLFREM-TEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMAD 680

Query: 422 NGFYPNVATYGSLANGI 438
           NGF P  +++  LA G+
Sbjct: 681 NGFIPEFSSFRMLAEGL 697



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 157/385 (40%), Gaps = 65/385 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVV-------- 39
           ML+ G  P V  +STV++ L  +G             D G +     F+ ++        
Sbjct: 327 MLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQ 386

Query: 40  -KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            +     +    V    P+   +N ++NA   +G P   ++LF++M   G  PD +TYN+
Sbjct: 387 LEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNI 446

Query: 99  MI-KLCARASRKHLLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +I  LC+       L   L+ + EM ++ C     T+ +++        +E AE +   M
Sbjct: 447 LIDNLCSSGK----LAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQM 502

Query: 155 REGRRDVCKIIREL----DLEDYSSENEGDDDD----DDEVFEKLLPNSI---------- 196
                DV  I R       L D     E  DD     D  + E L PN++          
Sbjct: 503 -----DVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYC 557

Query: 197 ---NPSSEPPLLPKTFAPNSRI----YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
              N S    +L    A    +    Y TL+ G     R    +++L  MR +      P
Sbjct: 558 KQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMK---GMKP 614

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKEL 308
               Y  V+ +L +  +   A  +  EMT +G P +  TY I+ +G C+    I +A + 
Sbjct: 615 TPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDF 674

Query: 309 LREMADDAKIEPDVVSYNILIDGFI 333
           L EMAD+  I P+  S+ +L +G +
Sbjct: 675 LVEMADNGFI-PEFSSFRMLAEGLL 698


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 211/473 (44%), Gaps = 42/473 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  ++T ++     G     E+VKLF        K  +  +     P+   +N V
Sbjct: 268 GVSPDVYLFTTAINAFCKGGK--VEEAVKLFS-------KMEEAGVA----PNVVTFNTV 314

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G+  +     ++M E G +P ++TY++++K   RA R     FVL+ + + G 
Sbjct: 315 IDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGF 374

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              +  + +L+ +++  G L  A  I   M      +        ++ Y     G  D+ 
Sbjct: 375 PPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC--KNGQADNA 432

Query: 185 DEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTTLMKG 222
           + + +++L    N +                          +L +  +P   + TTL+ G
Sbjct: 433 ERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISG 492

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
               G+ S  + +        +     D  T   ++  L +AG +D A ++  E+   G 
Sbjct: 493 LCKHGKHSKALELWFQFL---NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC 549

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             +R++YN L+ G C + ++D+A   L EM     ++PD  +Y+ILI G   ++    A+
Sbjct: 550 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG-LKPDNYTYSILICGLFNMNKVEEAI 608

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            F+++ +  G+ P   +Y+ ++     + + +   + FDEM+    V+ + V +N L+  
Sbjct: 609 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM-SKNVQPNTVVYNHLIRA 667

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           YCR G +  A  + E MK  G  PN ATY SL  G+S+  +  EA LL++E++
Sbjct: 668 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 114/488 (23%), Positives = 196/488 (40%), Gaps = 52/488 (10%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           FDVV K V             PD   +   +NA    GK ++ ++LF +M E G  P+V+
Sbjct: 262 FDVVCKGV------------SPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV 309

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           T+N +I       R        E+++E G+   + T+  LV              + +A 
Sbjct: 310 TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKG------------LTRAK 357

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--LLPKTFAPN 212
           R G  D   +++E+  + +       ++  D   E     S+N + E    ++ K  +  
Sbjct: 358 RIG--DAYFVLKEMTKKGFPPNVIVYNNLIDSFIE---AGSLNKAIEIKDLMVSKGLSLT 412

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           S  Y TL+KGY   G+  +  R+L  M     N +     ++T+V+  L      D A +
Sbjct: 413 SSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSHLMFDSALR 469

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            + EM    +         L+ G C+  +  KA EL  +  +   +  D  + N L+ G 
Sbjct: 470 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFV-VDTRTSNALLHGL 528

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                   A     E+  RG    ++SY TL+       +   A    DEM++   +K D
Sbjct: 529 CEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG-LKPD 587

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
              +++L+ G   M  VEEA +  +  K NG  P+V TY  + +G   A +  E    + 
Sbjct: 588 NYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFD 647

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E+                +   ++P+  + + L     R+     ALE+   M+  GI P
Sbjct: 648 EM----------------MSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 691

Query: 513 NKTKYKKI 520
           N   Y  +
Sbjct: 692 NSATYTSL 699



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +   P++  Y+ L+ G  N  +V + ++     +R   N   PD  TY+ ++    K
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR---NGMLPDVYTYSVMIDGCCK 635

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A   +  ++   EM    V  N + YN L++ YC+  ++  A EL RE      I P+  
Sbjct: 636 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL-REDMKHKGISPNSA 694

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI G  +I     A   F EMR  G+ P    YT L+  +    Q      +  EM
Sbjct: 695 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 754

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
                V  + + + +++ GY R G V EA R++  M+E G  P+  TY     G
Sbjct: 755 -HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 807



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/501 (21%), Positives = 217/501 (43%), Gaps = 51/501 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVK---RVRK 44
           M  +G  P+V  ++TV+  L   G             + G   ++  + ++VK   R ++
Sbjct: 299 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 358

Query: 45  FSDPDIVSDSK------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             D   V          P+   YN ++++    G   K +++ D M   G      TYN 
Sbjct: 359 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 418

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQS---LVAAYVGFGDLE--IAETIVQA 153
           +IK   +  +      +L+ +L +G  +   +F S   L+ +++ F      + E +++ 
Sbjct: 419 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 478

Query: 154 MREGRRDVCKIIRELDLEDYSSE---------NEG---DDDDDDEVFEKL-----LPNSI 196
           M  G   +  +I  L      S+         N+G   D    + +   L     L  + 
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 538

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
               E  +L +    +   Y TL+ G   + ++ +    L  M ++      PD+ TY+ 
Sbjct: 539 RIQKE--ILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR---GLKPDNYTYSI 593

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  L     ++ A Q   +  R G+  +  TY++++ G C+  + ++ +E   EM    
Sbjct: 594 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK- 652

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            ++P+ V YN LI  +      + AL    +M+ +GI+P   +YT+L+K  ++ S+ + A
Sbjct: 653 NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEA 712

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +F+EM R   ++ ++  +  L++GY ++G + + + ++  M     +PN  TY  +  
Sbjct: 713 KLLFEEM-RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIG 771

Query: 437 GISLARKPGEALLLWKEIKER 457
           G +      EA  L  E++E+
Sbjct: 772 GYARDGNVTEASRLLNEMREK 792



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 170/419 (40%), Gaps = 47/419 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G+  +  ++++V+  L          S  +FD  ++    F    ++ +  P    
Sbjct: 439 MLSIGFNVNQGSFTSVICLLC---------SHLMFDSALR----FVGEMLLRNMSPGGGL 485

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              +++     GK  K L+L+ Q    G   D  T N ++     A +      + + IL
Sbjct: 486 LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL 545

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             G  +   ++ +L++   G   L+ A   +  M         + R L  ++Y+      
Sbjct: 546 GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM---------VKRGLKPDNYTYSILIC 596

Query: 177 ---NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              N    ++  + ++    N         +LP  +      Y+ ++ G     R  +  
Sbjct: 597 GLFNMNKVEEAIQFWDDCKRNG--------MLPDVYT-----YSVMIDGCCKAERTEEGQ 643

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
                M  +      P+ V Y  ++ A  ++G +  A ++  +M   G+  N  TY  L+
Sbjct: 644 EFFDEMMSKN---VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           KG     ++++AK L  EM  +  +EP+V  Y  LIDG+  +           EM ++ +
Sbjct: 701 KGMSIISRVEEAKLLFEEMRMEG-LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 759

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            P KI+YT ++  +A       A+++ +EM R+  +  D + +   + GY + G V EA
Sbjct: 760 HPNKITYTVMIGGYARDGNVTEASRLLNEM-REKGIVPDSITYKEFIYGYLKQGGVLEA 817



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 30/271 (11%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVP---ANRITYNILLKGYCQQLQIDKAKELL 309
           +Y  ++  L+ A  +  AR VL  +    VP          + +      L +   +E+ 
Sbjct: 141 SYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEIR 200

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           R+M+D   +  +V       DG  L      AL  F  +  +G+ P+K +   L+ +   
Sbjct: 201 RKMSD---LLIEVYCTQFKRDGCYL------ALDVFPVLANKGMFPSKTTCNILLTSLVR 251

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +++ +   + FD + +   V  D+  +   +  +C+ G VEEA ++  +M+E G  PNV 
Sbjct: 252 ANEFQKCCEAFDVVCKG--VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV 309

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           T+ ++ +G+ +  +  EA +  +++ ER             + P L     L+  L    
Sbjct: 310 TFNTVIDGLGMCGRYDEAFMFKEKMVER------------GMEPTLITYSILVKGLT--- 354

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            RA     A  ++  M + G PPN   Y  +
Sbjct: 355 -RAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 384


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 211/473 (44%), Gaps = 42/473 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  ++T ++     G     E+VKLF        K  +  +     P+   +N V
Sbjct: 255 GVSPDVYLFTTAINAFCKGGK--VEEAVKLFS-------KMEEAGVA----PNVVTFNTV 301

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G+  +     ++M E G +P ++TY++++K   RA R     FVL+ + + G 
Sbjct: 302 IDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGF 361

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              +  + +L+ +++  G L  A  I   M      +        ++ Y     G  D+ 
Sbjct: 362 PPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC--KNGQADNA 419

Query: 185 DEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTTLMKG 222
           + + +++L    N +                          +L +  +P   + TTL+ G
Sbjct: 420 ERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISG 479

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
               G+ S  + +        +     D  T   ++  L +AG +D A ++  E+   G 
Sbjct: 480 LCKHGKHSKALELWFQFL---NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC 536

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             +R++YN L+ G C + ++D+A   L EM     ++PD  +Y+ILI G   ++    A+
Sbjct: 537 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG-LKPDNYTYSILICGLFNMNKVEEAI 595

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            F+++ +  G+ P   +Y+ ++     + + +   + FDEM+    V+ + V +N L+  
Sbjct: 596 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM-SKNVQPNTVVYNHLIRA 654

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           YCR G +  A  + E MK  G  PN ATY SL  G+S+  +  EA LL++E++
Sbjct: 655 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 707



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 114/488 (23%), Positives = 196/488 (40%), Gaps = 52/488 (10%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           FDVV K V             PD   +   +NA    GK ++ ++LF +M E G  P+V+
Sbjct: 249 FDVVCKGV------------SPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV 296

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           T+N +I       R        E+++E G+   + T+  LV              + +A 
Sbjct: 297 TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKG------------LTRAK 344

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--LLPKTFAPN 212
           R G  D   +++E+  + +       ++  D   E     S+N + E    ++ K  +  
Sbjct: 345 RIG--DAYFVLKEMTKKGFPPNVIVYNNLIDSFIE---AGSLNKAIEIKDLMVSKGLSLT 399

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           S  Y TL+KGY   G+  +  R+L  M     N +     ++T+V+  L      D A +
Sbjct: 400 SSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSHLMFDSALR 456

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            + EM    +         L+ G C+  +  KA EL  +  +   +  D  + N L+ G 
Sbjct: 457 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFV-VDTRTSNALLHGL 515

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                   A     E+  RG    ++SY TL+       +   A    DEM++   +K D
Sbjct: 516 CEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG-LKPD 574

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
              +++L+ G   M  VEEA +  +  K NG  P+V TY  + +G   A +  E    + 
Sbjct: 575 NYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFD 634

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E+                +   ++P+  + + L     R+     ALE+   M+  GI P
Sbjct: 635 EM----------------MSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 678

Query: 513 NKTKYKKI 520
           N   Y  +
Sbjct: 679 NSATYTSL 686



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +   P++  Y+ L+ G  N  +V + ++     +R   N   PD  TY+ ++    K
Sbjct: 566 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR---NGMLPDVYTYSVMIDGCCK 622

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A   +  ++   EM    V  N + YN L++ YC+  ++  A EL RE      I P+  
Sbjct: 623 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL-REDMKHKGISPNSA 681

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI G  +I     A   F EMR  G+ P    YT L+  +    Q      +  EM
Sbjct: 682 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 741

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
                V  + + + +++ GY R G V EA R++  M+E G  P+  TY     G
Sbjct: 742 -HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 794



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/499 (20%), Positives = 216/499 (43%), Gaps = 47/499 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVK---RVRK 44
           M  +G  P+V  ++TV+  L   G             + G   ++  + ++VK   R ++
Sbjct: 286 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 345

Query: 45  FSDPDIVSDSK------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             D   V          P+   YN ++++    G   K +++ D M   G      TYN 
Sbjct: 346 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 405

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQS---LVAAYVGFGDLE--IAETIVQA 153
           +IK   +  +      +L+ +L +G  +   +F S   L+ +++ F      + E +++ 
Sbjct: 406 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 465

Query: 154 MREGRRDVCKIIRELDLEDYSSE---------NEG---DDDDDDEVFEKLLPNSINPSS- 200
           M  G   +  +I  L      S+         N+G   D    + +   L        + 
Sbjct: 466 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 525

Query: 201 --EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
             +  +L +    +   Y TL+ G   + ++ +    L  M ++      PD+ TY+ ++
Sbjct: 526 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR---GLKPDNYTYSILI 582

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
             L     ++ A Q   +  R G+  +  TY++++ G C+  + ++ +E   EM     +
Sbjct: 583 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK-NV 641

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +P+ V YN LI  +      + AL    +M+ +GI+P   +YT+L+K  ++ S+ + A  
Sbjct: 642 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 701

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+EM R   ++ ++  +  L++GY ++G + + + ++  M     +PN  TY  +  G 
Sbjct: 702 LFEEM-RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 760

Query: 439 SLARKPGEALLLWKEIKER 457
           +      EA  L  E++E+
Sbjct: 761 ARDGNVTEASRLLNEMREK 779



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 170/419 (40%), Gaps = 47/419 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G+  +  ++++V+  L          S  +FD  ++    F    ++ +  P    
Sbjct: 426 MLSIGFNVNQGSFTSVICLLC---------SHLMFDSALR----FVGEMLLRNMSPGGGL 472

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              +++     GK  K L+L+ Q    G   D  T N ++     A +      + + IL
Sbjct: 473 LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL 532

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             G  +   ++ +L++   G   L+ A   +  M         + R L  ++Y+      
Sbjct: 533 GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM---------VKRGLKPDNYTYSILIC 583

Query: 177 ---NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              N    ++  + ++    N         +LP  +      Y+ ++ G     R  +  
Sbjct: 584 GLFNMNKVEEAIQFWDDCKRNG--------MLPDVYT-----YSVMIDGCCKAERTEEGQ 630

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
                M  +      P+ V Y  ++ A  ++G +  A ++  +M   G+  N  TY  L+
Sbjct: 631 EFFDEMMSKN---VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 687

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           KG     ++++AK L  EM  +  +EP+V  Y  LIDG+  +           EM ++ +
Sbjct: 688 KGMSIISRVEEAKLLFEEMRMEG-LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 746

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            P KI+YT ++  +A       A+++ +EM R+  +  D + +   + GY + G V EA
Sbjct: 747 HPNKITYTVMIGGYARDGNVTEASRLLNEM-REKGIVPDSITYKEFIYGYLKQGGVLEA 804



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 30/271 (11%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVP---ANRITYNILLKGYCQQLQIDKAKELL 309
           +Y  ++  L+ A  +  AR VL  +    VP          + +      L +   +E+ 
Sbjct: 128 SYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEIR 187

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           R+M+D   +  +V       DG  L      AL  F  +  +G+ P+K +   L+ +   
Sbjct: 188 RKMSD---LLIEVYCTQFKRDGCYL------ALDVFPVLANKGMFPSKTTCNILLTSLVR 238

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +++ +   + FD + +   V  D+  +   +  +C+ G VEEA ++  +M+E G  PNV 
Sbjct: 239 ANEFQKCCEAFDVVCKG--VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV 296

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           T+ ++ +G+ +  +  EA +  +++ ER             + P L     L+  L    
Sbjct: 297 TFNTVIDGLGMCGRYDEAFMFKEKMVER------------GMEPTLITYSILVKGLT--- 341

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            RA     A  ++  M + G PPN   Y  +
Sbjct: 342 -RAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 371


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 231/516 (44%), Gaps = 65/516 (12%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY P    +ST+V+     G     E+V L D +V+              +PD    + +
Sbjct: 164 GYEPDTITFSTLVNGFCLEGR--VSEAVALVDRMVEM-----------KQRPDLVTVSTL 210

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G+  + L L D+M E+G +PD +TY  ++    ++    L + +  ++ E  I
Sbjct: 211 INGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNI 270

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEG 179
              +  +  ++ +    G  + A ++   M        K I+  D+  YSS      N+G
Sbjct: 271 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEM------KGIKA-DVVTYSSLIGGLCNDG 323

Query: 180 DDDDDDEVFEKLLPNSINPS------------SEPPLL----------PKTFAPNSRIYT 217
             DD  ++  +++  +I P              E  LL           +  AP++  Y 
Sbjct: 324 KWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYN 383

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           +L+ G+  E  + +  +M   M  +      PD VTY+ ++++  KA  +D   ++  E+
Sbjct: 384 SLIDGFCKENCLHEANQMFDLMVSK---GCEPDIVTYSILINSYCKAKRVDDGMRLFREI 440

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
           +  G+  N ITYN L+ G+CQ  +++ AKEL +EM     + P VV+Y IL+DG     +
Sbjct: 441 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG-VPPSVVTYGILLDGLCDNGE 499

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              AL  F +M+   +      Y  ++     +S+   A  +F   L D  VK D+V +N
Sbjct: 500 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS-LSDKGVKPDVVTYN 558

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +++ G C+ G + EA  +  +MKE+G  P+  TY  L      A   G  L+   E+ E 
Sbjct: 559 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR----AHLGGSGLISSVELIE- 613

Query: 458 CEVKKEGVNADS-------DLPPPLKPDEELLDALA 486
            E+K  G +ADS       D+    + D+  LD L+
Sbjct: 614 -EMKVCGFSADSSTIKMVIDMLSDRRLDKSFLDMLS 648



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 127/286 (44%), Gaps = 18/286 (6%)

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +LG  +  E N    D  T T +++   +   +  A  VL    ++G   + IT++ L+ 
Sbjct: 118 VLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN 177

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C + ++ +A  L+  M  + K  PD+V+ + LI+G  L    + AL   + M   G  
Sbjct: 178 GFCLEGRVSEAVALVDRMV-EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 236

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P +++Y  ++     S    LA  +F +M  +  +K  +V ++++++  C+ G  ++A  
Sbjct: 237 PDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQYSIVIDSLCKDGSFDDALS 295

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +   M+  G   +V TY SL  G+    K  +   + +E+  R                 
Sbjct: 296 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR----------------N 339

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + PD     AL D+ V+     +A E+   M   GI P+   Y  +
Sbjct: 340 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 385


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 209/450 (46%), Gaps = 59/450 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y+ V+N     G+ +K L+L  +M   G KP++ TYN +I L  ++ +      V
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR---------RDVCKIIR 166
           L  ++  GI      + +L+  +   G+++ A  +   M + R           +C + R
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINP----------------------SSEPPL 204
                       G   + D+VF K+    + P                      S    +
Sbjct: 128 C-----------GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQM 176

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           +     PN   YT L  G    G+V     +L  M  +       +  TY ++V+ L K+
Sbjct: 177 VQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGK---GLQLNICTYNSLVNGLCKS 233

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G++ +A +++ EM   G+  + IT+  L+  YC+  ++ KA ELLREM D   ++P V++
Sbjct: 234 GNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRG-LQPTVIT 292

Query: 325 YNILIDGFIL---IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           +N+L++GF +   ++D    L +   M  +GI P   +Y +LMK + + +  +   +++ 
Sbjct: 293 FNVLMNGFCMSGMLEDGERLLAW---MLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYK 349

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
            M     V  D   +N+L++G+C+   ++EA  + + M E GF    ++Y S+  G    
Sbjct: 350 GMCARG-VMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKK 408

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           +K  EA  L++E+      ++EG+ AD+++
Sbjct: 409 KKISEARELFEEM------RREGMAADAEI 432



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 157/331 (47%), Gaps = 26/331 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP+   Y+T++ GY   G +   ++++  M+ +      P+  TY +++  L K+G +D 
Sbjct: 7   APDVVSYSTVINGYCLGGELQKVLKLIQEMQMK---GLKPNLYTYNSIILLLCKSGKVDD 63

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +VL EM   G+  + + Y  L+ G+C+   I  A +L  EM +  +I PD ++Y  +I
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEM-EKQRIVPDFIAYTAVI 122

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G         A   FN+M +RG+ P +++YTTL+  +  S + + A  + ++M++   +
Sbjct: 123 CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG-L 181

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             ++V +  L +G C++G V+ A  ++  M   G   N+ TY SL NG+  +    +A+ 
Sbjct: 182 TPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVK 241

Query: 450 LWKEIK----------------ERCEVKKEGVNADSDLPP----PLKPDEELLDALADIC 489
           L +E++                  C+   E V A   L       L+P     + L +  
Sbjct: 242 LMEEMEVAGMYPDTITFTTLMDAYCKTG-EMVKAHELLREMLDRGLQPTVITFNVLMNGF 300

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +        ++A M E GI PN T Y  +
Sbjct: 301 CMSGMLEDGERLLAWMLEKGIMPNTTTYNSL 331



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 154/393 (39%), Gaps = 75/393 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P    ++T++      G+     + KLFD + K+        IV    PD  A
Sbjct: 71  MINQGIVPDTVVYTTLIDGFCKLGNIQA--AYKLFDEMEKQ-------RIV----PDFIA 117

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y AV+      GK  +  ++F++M   G +PD +TY  +I    ++        +  +++
Sbjct: 118 YTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMV 177

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+T  + T+ +L       G ++ A  ++  M       C    +L++  Y+S   G 
Sbjct: 178 QSGLTPNVVTYTALADGLCKLGQVDTANELLHEM-------CGKGLQLNICTYNSLVNG- 229

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKT----FAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                      L  S N      L+ +       P++  +TTLM  Y   G +     +L
Sbjct: 230 -----------LCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELL 278

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              R   D    P  +T+  +++    +G ++   ++LA M   G+  N  TYN L+K Y
Sbjct: 279 ---REMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQY 335

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG---------------------FILI 335
           C +  +    E+ + M     + PD  +YNILI G                     F L 
Sbjct: 336 CIRNNMRCTTEIYKGMCARG-VMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLT 394

Query: 336 DDS--------------AGALTFFNEMRARGIA 354
             S              + A   F EMR  G+A
Sbjct: 395 ASSYNSIIKGFFKKKKISEARELFEEMRREGMA 427


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 207/449 (46%), Gaps = 45/449 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ SGY P   ++  ++  LA  G     ES+K+   +V R              P   A
Sbjct: 71  MVESGYKPDNVSYHILIHGLAKIGKLD--ESLKILSEMVMR-----------GQTPSMQA 117

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPD-VLTYNVMIKLCARASRKHLLVFVLERI 119
           Y++++ A A   +      LFD+M   G  PD ++ Y +++ LC     K       ER 
Sbjct: 118 YSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKD----ASERF 173

Query: 120 LEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYS 174
            +M    C   +  +  L+      G LE A T+   M+      DV      LD    +
Sbjct: 174 KQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKA 233

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              E    +  ++FE +                 + PN   ++TL+ G    G +   + 
Sbjct: 234 RRVE----EGCKLFEAMRAAG-------------YVPNVITFSTLIHGLCRTGELEKALE 276

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           + G+M    +    P+  TYTT++S L +A  + +AR++  +MT+  +P + + YN L+ 
Sbjct: 277 VFGSML---EAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 333

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++  +D+A++L REM+  A ++P +V++N LIDGF  +     A     EM  +G+A
Sbjct: 334 GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLA 393

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
               +Y  L+   + +++   A +V+ +M R+ +  +D V+    V G C+ G +++A  
Sbjct: 394 ADSCTYRILIAGLSRATKLDEALEVYKQM-REKKFLLDPVSCVSFVGGLCKTGNIDQAYA 452

Query: 415 IIERMKENGFYPNVATYGSLANG-ISLAR 442
           + E  +++G  PN  T+  L+   I L R
Sbjct: 453 VFEATRKSGAVPNPETFRILSESLIKLGR 481



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 200/443 (45%), Gaps = 30/443 (6%)

Query: 25  DDGPVESVKLFDVVVKRVRKFSDPD---------IVSDSKPDTAAYNAVLNACANLGKPK 75
           D     +V  +  ++K + K + P+         + +   PD  A+N V+   A     +
Sbjct: 3   DKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNME 62

Query: 76  KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           K  +++  M E G KPD ++Y+++I   A+  +    + +L  ++  G T  M  + SLV
Sbjct: 63  KAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLV 122

Query: 136 AAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPN 194
            A      ++ A ++   M R G      +  EL L    +   G   D  E F+++  +
Sbjct: 123 RALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQA---GKVKDASERFKQMPKH 179

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
                           PN  +Y  L+ G  + G++     +   M+    ++  PD VTY
Sbjct: 180 GCQ-------------PNVPVYNVLLHGLCSSGQLEQANTLFAEMK---SHSCSPDVVTY 223

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
            T++ A+ KA  ++   ++   M   G   N IT++ L+ G C+  +++KA E+   M  
Sbjct: 224 NTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML- 282

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +A  +P+  +Y  LI G    +    A   F +M    I P  ++Y +L+  +       
Sbjct: 283 EAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMD 342

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A K++ EM     ++  IV +N L++G+C++G +  A  ++  M   G   +  TY  L
Sbjct: 343 EAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRIL 402

Query: 435 ANGISLARKPGEALLLWKEIKER 457
             G+S A K  EAL ++K+++E+
Sbjct: 403 IAGLSRATKLDEALEVYKQMREK 425



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 175/427 (40%), Gaps = 35/427 (8%)

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           +V TY+ +IK   + ++      VLE ++  G    +  F  ++  +    ++E A  + 
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           Q M E       +   + +   +    G  D+  ++  +++     PS +          
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLA--KIGKLDESLKILSEMVMRGQTPSMQA--------- 117

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
               Y++L++      RV     +   M R      HPD + +  ++  L +AG +  A 
Sbjct: 118 ----YSSLVRALAKARRVDHASSLFDEMIR---GGHHPDRLMFYELILGLCQAGKVKDAS 170

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           +   +M + G   N   YN+LL G C   Q+++A  L  EM   +   PDVV+YN L+D 
Sbjct: 171 ERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS-CSPDVVTYNTLLDA 229

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                        F  MRA G  P  I+++TL+     + + + A +VF  ML +   K 
Sbjct: 230 VCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML-EAGCKP 288

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           +   +  L+ G CR   V +A+ + E+M +    P+   Y SL  G        EA  L+
Sbjct: 289 NKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLY 348

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           +E+           +  + L P +     L+D    +        +A E+VA M   G+ 
Sbjct: 349 REM-----------SGGAGLQPTIVTFNTLIDGFCKL----GKLGRANELVAEMGTKGLA 393

Query: 512 PNKTKYK 518
            +   Y+
Sbjct: 394 ADSCTYR 400



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 146/367 (39%), Gaps = 56/367 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YN +L+   + G+ ++   LF +M      PDV+TYN ++    +A R      
Sbjct: 182 QPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCK 241

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + E +   G    + TF +L+      G+LE A  +  +M E     CK           
Sbjct: 242 LFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG---CK----------- 287

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                               PN   YTTL+ G     +V     
Sbjct: 288 ------------------------------------PNKYTYTTLISGLCRAEKVIQARE 311

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT-RIGVPANRITYNILL 293
           +   M +       PD V Y ++++   K GSMD A ++  EM+   G+    +T+N L+
Sbjct: 312 LFEKMTQA---CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLI 368

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C+  ++ +A EL+ EM     +  D  +Y ILI G         AL  + +MR +  
Sbjct: 369 DGFCKLGKLGRANELVAEMGTKG-LAADSCTYRILIAGLSRATKLDEALEVYKQMREKKF 427

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               +S  + +     +     A  VF E  R      +   + +L E   ++G VE+A+
Sbjct: 428 LLDPVSCVSFVGGLCKTGNIDQAYAVF-EATRKSGAVPNPETFRILSESLIKLGRVEDAQ 486

Query: 414 RIIERMK 420
           +++E  K
Sbjct: 487 KLMEPAK 493


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 207/452 (45%), Gaps = 51/452 (11%)

Query: 34  LFDVVVKRVRKFSDPD----IVSDSK-----PDTAAYNAVLNACANLGKPKKFLQ-LFDQ 83
           +FD+VVK   +    D    IV  S+     P   +YNAVL+A     +   F + +F +
Sbjct: 136 VFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M +    P+V TYN++I+    A    + +   +R+ + G    + T+ +L+  Y     
Sbjct: 196 MLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRK 255

Query: 144 LEIAETIVQAM--------------------REGR-RDVCKIIRELDLEDYSSENEGDDD 182
           ++    ++++M                    REGR +++  ++ E++   YS        
Sbjct: 256 IDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSL------- 308

Query: 183 DDDEVFEKLLPNSINPSS-------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            D+  +  L+       +          +L    +P+   YT+L+      G ++     
Sbjct: 309 -DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEF 367

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  MR +      P+  TYTT+V    + G M+ A +VL EM   G   + +TYN L+ G
Sbjct: 368 LDQMRVR---GLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALING 424

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   ++  A  +L +M +   + PDVVSY+ ++ GF    D   AL    +M A+GI P
Sbjct: 425 HCIAGKMVDAIAVLEDMKEKG-LTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKP 483

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y++L++ F    + K A  +FDEMLR   +  D   +  L+  YC  G +++A ++
Sbjct: 484 DTITYSSLIQGFCEQRRTKEACDLFDEMLR-VGLPPDEFTYTALINAYCMEGDLQKAIQL 542

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEA 447
              M E G  P+V TY  L NG++   +  EA
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQARTREA 574



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 163/356 (45%), Gaps = 36/356 (10%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y TL+ GY    ++ D   +L +M  +      P+ ++Y  V++ L + G M   
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFELLRSMALK---GLEPNLISYNVVINGLCREGRMKEI 294

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             VL EM + G   + +TYN L+KGYC++    +A  +  EM     + P V++Y  LI 
Sbjct: 295 SFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG-LSPSVITYTSLIH 353

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                 +   A  F ++MR RG+ P + +YTTL+  F+       A +V  EM+ D    
Sbjct: 354 SMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMI-DNGFS 412

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             +V +N L+ G+C  G + +A  ++E MKE G  P+V +Y ++ +G   +    EAL +
Sbjct: 413 PSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRV 472

Query: 451 WKE----------------IKERCEVK--KEGVNA-DSDLPPPLKPDEELLDALADICVR 491
            ++                I+  CE +  KE  +  D  L   L PDE    AL +    
Sbjct: 473 KRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCM 532

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKR 547
               +KA+++   M E G+ P+   Y  +   ++            +Q R RE KR
Sbjct: 533 EGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLN------------KQARTREAKR 576



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 5/254 (1%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L    +PN   Y  L++G+   G +   +R      R E     P+ VTY T++    K
Sbjct: 196 MLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFD---RMEKKGCLPNVVTYNTLIDGYCK 252

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +D   ++L  M   G+  N I+YN+++ G C++ ++ +   +L EM +      D V
Sbjct: 253 LRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEM-NKRGYSLDEV 311

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN LI G+    +   AL    EM   G++P+ I+YT+L+ +   +     A +  D+M
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQM 371

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R   +  +   +  LV+G+ + G + EA R+++ M +NGF P+V TY +L NG  +A K
Sbjct: 372 -RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGK 430

Query: 444 PGEALLLWKEIKER 457
             +A+ + +++KE+
Sbjct: 431 MVDAIAVLEDMKEK 444



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 108/513 (21%), Positives = 209/513 (40%), Gaps = 104/513 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P V  +++++  +  +G+             + R  +F D   V    P+   
Sbjct: 336 MLRHGLSPSVITYTSLIHSMCKAGN-------------MNRATEFLDQMRVRGLCPNERT 382

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++  +  G   +  ++  +M + G  P V+TYN +I     A +    + VLE + 
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMK 442

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+T  + ++ ++++ +    D++      +A+R  R+ V K I+              
Sbjct: 443 EKGLTPDVVSYSTVLSGFCRSYDVD------EALRVKRKMVAKGIK-------------- 482

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P++  Y++L++G+  + R  +   +   M 
Sbjct: 483 ------------------------------PDTITYSSLIQGFCEQRRTKEACDLFDEML 512

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R       PD  TYT +++A    G + +A Q+  EM   GV  + +TY++L+ G  +Q 
Sbjct: 513 RV---GLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQA 569

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +  +AK LL ++  +  +  D V+Y+ LI+    I+                      S 
Sbjct: 570 RTREAKRLLLKLFYEESVPSD-VTYHTLIENCSNIEFK--------------------SV 608

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +L+K F +      A++VF+ ML     K D  A+N+++ G+CR G + +A  + + M 
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESMLEKNH-KPDGTAYNVMIHGHCRGGDIRKAYSLYKEMV 667

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           ++GF  +  T  +L   +    K  E   +   +   CE+                 + E
Sbjct: 668 KSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCEL----------------SEAE 711

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
               L +I  R       L+++A M + G  PN
Sbjct: 712 QAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 193/416 (46%), Gaps = 36/416 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +  +L+      +  + L  F QM E   +P+V+T+  ++    R  R    V +
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E    +  ++    + D S 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID-SL 265

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   D   +F ++         E  + P  F  NS I      G+ + GR SD  ++
Sbjct: 266 CKDGRHSDAQNLFTEM--------QEKGIFPDLFTYNSMIV-----GFCSSGRWSDAEQL 312

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ +   PD VTY  +++A VK G    A ++  EM   G+  N ITYN ++ G
Sbjct: 313 LQEMLERKIS---PDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 369

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +C+Q ++D A+++   MA      PDV ++  LIDG+     IDD    +   +EM  RG
Sbjct: 370 FCKQDRLDAAEDMFYLMATKG-CSPDVFTFTTLIDGYCGAKRIDD---GMELLHEMPRRG 425

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +    ++Y TL+  F L      A  +  +M+    V  DIV  N L++G C  G +++A
Sbjct: 426 LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-VCPDIVTCNTLLDGLCDNGKLKDA 484

Query: 413 KRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + + M++           NG  P+V TY  L  G+    K  EA  L++E+  R
Sbjct: 485 LEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 540



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 206/480 (42%), Gaps = 84/480 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    + T+V  +   GD   V ++ L       +RK  +   VS   P+   
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGD--TVSALNL-------LRKMEE---VSHIIPNVVI 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A++++    G+      LF +M E G  PD+ TYN MI     + R      +L+ +L
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I+  + T+ +L+ A+V                                      EG 
Sbjct: 318 ERKISPDVVTYNALINAFV-------------------------------------KEGK 340

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  E+++++LP  I              PN+  Y +++ G+  + R+     M   M 
Sbjct: 341 FFEAAELYDEMLPRGI-------------IPNTITYNSMIDGFCKQDRLDAAEDMFYLMA 387

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD  T+TT++     A  +D   ++L EM R G+ AN +TYN L+ G+C   
Sbjct: 388 TK---GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVG 444

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA---------- 350
            ++ A +L ++M   + + PD+V+ N L+DG         AL  F  M+           
Sbjct: 445 DLNAALDLSQQMIS-SGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 503

Query: 351 -RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G+ P  ++Y  L+       +   A ++++EM     V  D + ++ +++G C+   +
Sbjct: 504 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVP-DTITYSSMIDGLCKQSRL 562

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +EA ++   M    F PNV T+ +L NG   A +  + L L+      CE+ + G+ AD+
Sbjct: 563 DEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF------CEMGRRGIVADA 616



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 187/428 (43%), Gaps = 38/428 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P +  +++++    +SG     E  +L   +++R  K S         PD   
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAE--QLLQEMLER--KIS---------PDVVT 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++NA    GK  +  +L+D+M   G  P+ +TYN MI    +  R      +   + 
Sbjct: 328 YNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMA 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF +L+  Y G   ++    ++  M   RR +       +   +     GD
Sbjct: 388 TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP--RRGLVANTVTYNTLIHGFCLVGD 445

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +   ++ ++++ + +              P+     TL+ G  + G++ D + M  AM+
Sbjct: 446 LNAALDLSQQMISSGV-------------CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 492

Query: 241 RQ--EDNASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +   + +ASHP      D +TY  ++  L+  G    A ++  EM   G+  + ITY+ +
Sbjct: 493 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C+Q ++D+A ++   M   +   P+VV++N LI+G+         L  F EM  RG
Sbjct: 553 IDGLCKQSRLDEATQMFVSMGSKS-FSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 611

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I    I Y TL+  F        A  +F EM+        I   NML  G+     +E A
Sbjct: 612 IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT-GFWSKEELERA 670

Query: 413 KRIIERMK 420
             ++E ++
Sbjct: 671 VAMLEDLQ 678



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 123/281 (43%), Gaps = 17/281 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++ E      D  ++  ++        +  A     ++T++G+  + +T+  LL G C +
Sbjct: 103 QKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVE 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A +   +M +     P+VV++  L++G         A+   + M   G+ PT+I+
Sbjct: 163 DRVSEALDFFHQMFE-TTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T++           A  +  +M     +  ++V ++ +++  C+ G   +A+ +   M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +E G +P++ TY S+  G   + +  +A  L +E+ ER                 + PD 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLER----------------KISPDV 325

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +AL +  V+   F +A E+   M   GI PN   Y  +
Sbjct: 326 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSM 366


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 173/381 (45%), Gaps = 59/381 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y+ V+N    +G+ ++ L+L ++M   G KP+  TYN +I L  +  +      V
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  ++  GI      + +L+  +   G++  A  +   M++                   
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQK------------------- 386

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                          +  +P+   YT ++ G    GRV +  ++
Sbjct: 387 -------------------------------RKISPDFITYTAVICGLCQTGRVMEADKL 415

Query: 236 LGAM--RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
              M  +R E     PD VTYT ++    K G M  A  +  +M ++G+  N +TY  L 
Sbjct: 416 FHEMVCKRLE-----PDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALA 470

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++D A ELL EM     +E ++ +YN L++G     +   A+    +M   G 
Sbjct: 471 DGLCKCGEVDTANELLHEMCRKG-LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++YTTLM A+  S +   A+++  +ML D  ++  +V +N+L+ G+C  G++E+ +
Sbjct: 530 HPDAVTYTTLMDAYCKSREMVRAHELLRQML-DRELQPTVVTFNVLMNGFCMSGMLEDGE 588

Query: 414 RIIERMKENGFYPNVATYGSL 434
           ++++ M E G  PN  TY SL
Sbjct: 589 KLLKWMLEKGIMPNATTYNSL 609



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 158/309 (51%), Gaps = 21/309 (6%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N+  Y  +       GRV +  ++L  M   E     PD ++Y+TV++   + G + R  
Sbjct: 252 NTASYNIITHSLCQLGRVVEAHQLLLQM---ELRGCIPDVISYSTVINGYCQVGELQRVL 308

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           +++ EM   G+  N  TYN ++   C+  ++ +A+ +LREM  +  I PD V Y  LIDG
Sbjct: 309 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG-IAPDGVIYTTLIDG 367

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F  + + + A   F+EM+ R I+P  I+YT ++     + +   A+K+F EM+   R++ 
Sbjct: 368 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV-CKRLEP 426

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V +  L++GYC+ G ++EA  +  +M + G  PN+ TY +LA+G+    K GE     
Sbjct: 427 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC---KCGEVDTAN 483

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           + + E C   ++G          L+ +    ++L +   +A    +A++++  ME  G  
Sbjct: 484 ELLHEMC---RKG----------LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH 530

Query: 512 PNKTKYKKI 520
           P+   Y  +
Sbjct: 531 PDAVTYTTL 539



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 21/314 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   PN   Y  ++      G+V++  R+L   R        PD V YTT++    K G+
Sbjct: 317 KGLKPNPYTYNGVILLLCKTGKVAEAERVL---REMISEGIAPDGVIYTTLIDGFCKLGN 373

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A ++  EM +  +  + ITY  ++ G CQ  ++ +A +L  EM    ++EPD V+Y 
Sbjct: 374 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVC-KRLEPDEVTYT 432

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LIDG+        A +  N+M   G+ P  ++YT L        +   AN++  EM R 
Sbjct: 433 ALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRK 492

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             ++++I  +N LV G C+ G +++A ++++ M+  GF+P+  TY +L +    +R+   
Sbjct: 493 G-LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  L +++ +R                 L+P     + L +    +       +++  M 
Sbjct: 552 AHELLRQMLDR----------------ELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWML 595

Query: 507 EHGIPPNKTKYKKI 520
           E GI PN T Y  +
Sbjct: 596 EKGIMPNATTYNSL 609



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 166/393 (42%), Gaps = 40/393 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    ++T++      G+     + +LFD + KR  K S         PD   
Sbjct: 349 MISEGIAPDGVIYTTLIDGFCKLGNVSS--AYRLFDEMQKR--KIS---------PDFIT 395

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y AV+      G+  +  +LF +M     +PD +TY  +I    +  +      +  ++L
Sbjct: 396 YTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQML 455

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +MG+T  + T+ +L       G+++ A  ++  M       C+   EL++  Y+S   G 
Sbjct: 456 QMGLTPNIVTYTALADGLCKCGEVDTANELLHEM-------CRKGLELNIYTYNSLVNG- 507

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKT----FAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                      L  + N      L+       F P++  YTTLM  Y    +  + VR  
Sbjct: 508 -----------LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC---KSREMVRAH 553

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             +R+  D    P  VT+  +++    +G ++   ++L  M   G+  N  TYN L+K Y
Sbjct: 554 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 613

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C +  +    E+ R M     + PD  +YNILI G     +   A     +M  +G   T
Sbjct: 614 CIRNNMRATTEIYRGMCAKGVV-PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLT 672

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
             SY  L+K F    +   A ++F++M R+  V
Sbjct: 673 VSSYNALIKGFYKRKKFLEARELFEQMRREGLV 705



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V  E   +GV  N  +YNI+    CQ  ++ +A +LL +M     I PDV+SY+ +I
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCI-PDVISYSTVI 295

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G+  + +    L    EM+ +G+ P   +Y  ++     + +   A +V  EM+ +  +
Sbjct: 296 NGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG-I 354

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D V +  L++G+C++G V  A R+ + M++    P+  TY ++  G+    +  EA  
Sbjct: 355 APDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADK 414

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L+ E+                +   L+PDE    AL D   +    ++A  +   M + G
Sbjct: 415 LFHEM----------------VCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMG 458

Query: 510 IPPNKTKYKKI 520
           + PN   Y  +
Sbjct: 459 LTPNIVTYTAL 469


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 216/493 (43%), Gaps = 115/493 (23%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY+P V A++ V+              + L D  +   R+F D  +     P+   YN +
Sbjct: 151 GYVPSVLAYNAVL--------------LALSDASLTSARRFFDSMLSDGVAPNVYTYNIL 196

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           + A    G  K+ L +   M   G  P+V+TYN                           
Sbjct: 197 VRALCGRGHRKEALSILRDMRGAGCGPNVVTYN--------------------------- 229

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEG 179
                   +LVAA+   G+++ AE +V  MREG         + +L  ++S        G
Sbjct: 230 --------TLVAAFFRAGEVDGAERLVGMMREGG-------LKPNLVTFNSMVNGMCKAG 274

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +D  +VF++++   +             AP+   Y TL+ GY   G   + + +   M
Sbjct: 275 KMEDARKVFDEMVREGL-------------APDGVSYNTLVGGYCKAGCSHEALSVFAEM 321

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            ++      PD VT+T+++  + KAG+++RA  ++ +M   G+  N +T+  L+ G+C++
Sbjct: 322 TQK---GIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKK 378

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +D A   +R M    +I+P VV YN LI+G+ ++     A    +EM A+G+ P  ++
Sbjct: 379 GFLDDALLAVRGM-KQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 437

Query: 360 YTTLMKAFA---------------------------------LSSQPKL--ANKVFDEML 384
           Y+T++ A+                                  L  + +L  A+ +F  M+
Sbjct: 438 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMI 497

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           +   ++ D   +  L++G+C+ G VE A  + ++M + G  P+V TY  L NG+S + + 
Sbjct: 498 K-LGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARA 556

Query: 445 GEA-LLLWKEIKE 456
            EA  LL+K   E
Sbjct: 557 MEAQQLLFKLYHE 569



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 188/415 (45%), Gaps = 35/415 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   +N+++N     GK +   ++FD+M   G  PD ++YN ++    +A   H  + 
Sbjct: 257 KPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALS 316

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V   + + GI   + TF SL+      G+LE A T+V+ MRE    + ++     ++ + 
Sbjct: 317 VFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFC 376

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G  DD       +    I PS                Y  L+ GY   GR+ +   
Sbjct: 377 --KKGFLDDALLAVRGMKQCRIKPSVV-------------CYNALINGYCMVGRMDEARE 421

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M   E     PD VTY+T++SA  K      A ++  +M   GV  + ITY+ L++
Sbjct: 422 LLHEM---EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIR 478

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C + ++  A  L + M     ++PD  +Y  LIDG     +   AL+  ++M   G+ 
Sbjct: 479 VLCGEKRLSDAHVLFKNMI-KLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVL 537

Query: 355 PTKISYTTLMKAFALSSQ---------------PKLANKVFDEMLRDPRVKVDIVAWNML 399
           P  ++Y+ L+   + S++               P  AN  +D ++   R K ++ +   L
Sbjct: 538 PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCR-KAELKSVLAL 596

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++G+C  GL+ EA ++ + M +  +  + + Y  L +G   A    +AL   K++
Sbjct: 597 LKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQM 651



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 151/317 (47%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L    APN   Y  L++     G   + + +L  MR        P+ VTY T+V+A  +
Sbjct: 181 MLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMR---GAGCGPNVVTYNTLVAAFFR 237

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A +++  M   G+  N +T+N ++ G C+  +++ A+++  EM  +  + PD V
Sbjct: 238 AGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREG-LAPDGV 296

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           SYN L+ G+     S  AL+ F EM  +GI P  +++T+L+     +   + A  +  +M
Sbjct: 297 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQM 356

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R+  ++++ V +  L++G+C+ G +++A   +  MK+    P+V  Y +L NG  +  +
Sbjct: 357 -RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGR 415

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  L  E++ +                 LKPD      +     +      A E+  
Sbjct: 416 MDEARELLHEMEAK----------------GLKPDVVTYSTIISAYCKNCDTHSAFELNQ 459

Query: 504 CMEEHGIPPNKTKYKKI 520
            M E G+ P+   Y  +
Sbjct: 460 QMLEKGVLPDAITYSSL 476



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/454 (22%), Positives = 194/454 (42%), Gaps = 49/454 (10%)

Query: 1   MLRSGYL-PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+R G L P++  ++++V+ +  +G              ++  RK  D  +     PD  
Sbjct: 250 MMREGGLKPNLVTFNSMVNGMCKAGK-------------MEDARKVFDEMVREGLAPDGV 296

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           +YN ++      G   + L +F +M + G  PDV+T+  +I +  +A      V ++ ++
Sbjct: 297 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQM 356

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            E G+ +   TF +L+  +   G L+ A   V+ M++ R     +     +  Y     G
Sbjct: 357 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCM--VG 414

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             D+  E+  +             +  K   P+   Y+T++  Y       DT       
Sbjct: 415 RMDEARELLHE-------------MEAKGLKPDVVTYSTIISAYCKN---CDTHSAFELN 458

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++  +    PD +TY++++  L     +  A  +   M ++G+  +  TY  L+ G+C++
Sbjct: 459 QQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKE 518

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             ++ A  L  +M   A + PDVV+Y++LI+G      +  A     ++      P    
Sbjct: 519 GNVESALSLHDKMV-KAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTK 577

Query: 360 YTTLM---------------KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           Y  LM               K F +      A+KV+  ML D    +D   +++L+ G+C
Sbjct: 578 YDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSML-DRNWNLDGSVYSVLIHGHC 636

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           R G V +A    ++M + GF PN  +  SL  G+
Sbjct: 637 RAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGL 670



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 129/272 (47%), Gaps = 19/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + Y  V+ AL  A S+  AR+    M   GV  N  TYNIL++  C +    +A  +
Sbjct: 154 PSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSI 212

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           LR+M   A   P+VV+YN L+  F    +  GA      MR  G+ P  +++ +++    
Sbjct: 213 LRDM-RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMC 271

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + + + A KVFDEM+R+  +  D V++N LV GYC+ G   EA  +   M + G  P+V
Sbjct: 272 KAGKMEDARKVFDEMVREG-LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 330

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            T+ SL + +  A     A+ L ++++ER                 L+ +E    AL D 
Sbjct: 331 VTFTSLIHVMCKAGNLERAVTLVRQMRER----------------GLQMNEVTFTALIDG 374

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +  F   AL  V  M++  I P+   Y  +
Sbjct: 375 FCKKGFLDDALLAVRGMKQCRIKPSVVCYNAL 406



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 21/211 (9%)

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G  P+ ++Y  ++ A + +S    A + FD ML D  V  ++  +N+LV   C  G  +E
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTS-ARRFFDSMLSDG-VAPNVYTYNILVRALCGRGHRKE 208

Query: 412 AKRIIERMKENGFYPNVATYGSLANG-------------ISLARKPG---EALLLWKEIK 455
           A  I+  M+  G  PNV TY +L                + + R+ G     +     + 
Sbjct: 209 ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVN 268

Query: 456 ERCEVKK-EGVNA--DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
             C+  K E      D  +   L PD    + L     +A    +AL + A M + GI P
Sbjct: 269 GMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMP 328

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQARQDRRR 543
           +   +  +   M       +  +  RQ R R
Sbjct: 329 DVVTFTSLIHVMCKAGNLERAVTLVRQMRER 359


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 217/456 (47%), Gaps = 36/456 (7%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P+  +++TV+  L   GD    E++ +   + K   + S         PD  ++N V
Sbjct: 222 GCVPNAISYNTVIKSLC--GDSRSQEALDMVQRMAKEGGRCS---------PDVVSFNTV 270

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC-ARASRKHLLVFVLERILEM 122
           ++     G+  K   L ++M + G +PDV+TYN ++  LC ARA  K  LV  L ++++ 
Sbjct: 271 IHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELV--LRQMVDK 328

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+     T+ +++  Y   G  + +  + + M    + +   I   +    S    G   
Sbjct: 329 GVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTS--KGLIPGIVTFNSFMSSLCKHGRSK 386

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           D +E+F+ +               K   P+   Y+ L+ GY  EGR +D   +  +M   
Sbjct: 387 DAEEIFQYMTT-------------KGHMPDLVSYSILLHGYATEGRFADMNNLFHSM--- 430

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D     +   +  ++SA  K G MD A  V  EM   GV  + +TY+ L+  +C+  ++
Sbjct: 431 ADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRL 490

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYT 361
             A E   +M     +EP+ V Y+ LI GF +  D   A    +EM ++GI  P  + ++
Sbjct: 491 ADAMEKFSQMIS-IGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFS 549

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +++ +     +   A+ VF+ ++     +  IV +N L++GYC +G +E+A  +++ M  
Sbjct: 550 SIIHSLCNEGRVMDAHDVFNLVIHIGD-RPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVS 608

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            G  P+V TY +L +G   + K  + L+L++E+  +
Sbjct: 609 VGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHK 644



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 183/438 (41%), Gaps = 67/438 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G++P + ++S ++   A  G    + ++             +D  IV++       
Sbjct: 395 MTTKGHMPDLVSYSILLHGYATEGRFADMNNL---------FHSMADKGIVANCH----C 441

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N +++A A  G   + + +F +M   G +PDV+TY+ +I    R  R    +    +++
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            +G+      + SL+  +   GDL  A+ +V                             
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVS---------------------------- 533

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E+  K +P                 PN   +++++    NEGRV D   +   + 
Sbjct: 534 -----EMMSKGIPR----------------PNIVFFSSIIHSLCNEGRVMDAHDVFNLVI 572

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              D    P  VT+ +++      G M++A  VL  M  +G+  + +TYN L+ GYC+  
Sbjct: 573 HIGDR---PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSG 629

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID    L REM    K++P  V+Y+I++DG      ++ A   F+EM   G A    +Y
Sbjct: 630 KIDDGLILFREMLHK-KVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTY 688

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+K    +     A  +F + L     K DI   N ++    ++   EEA  +   + 
Sbjct: 689 KILLKGLCRNDLTDEAITLFHK-LGAMDCKFDITILNTVINALYKVRRREEANDLFAAIS 747

Query: 421 ENGFYPNVATYGSLANGI 438
            +G  PNV+TYG + + +
Sbjct: 748 TSGLVPNVSTYGVMIHNL 765



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 201/460 (43%), Gaps = 44/460 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    ++ ++   + SG     ES K+F       RK +   ++    P    
Sbjct: 325 MVDKGVEPDGLTYTAIIHGYSCSGHWK--ESAKMF-------RKMTSKGLI----PGIVT 371

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N+ +++    G+ K   ++F  M   G  PD+++Y++++   A   R   +  +   + 
Sbjct: 372 FNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMA 431

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSE--- 176
           + GI      F  L++A+   G ++ A  +   M+ +G R         D+  YS+    
Sbjct: 432 DKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRP--------DVVTYSTLISA 483

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G   D  E F +++   + P             N+ +Y +L+ G+   G +     
Sbjct: 484 FCRMGRLADAMEKFSQMISIGLEP-------------NTVVYHSLIHGFCMHGDLVKAKE 530

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M  +      P+ V +++++ +L   G +  A  V   +  IG     +T+N L+ 
Sbjct: 531 LVSEMMSK--GIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLID 588

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC   +++KA  +L  M     IEPDVV+YN L+ G+         L  F EM  + + 
Sbjct: 589 GYCLVGKMEKAFGVLDAMVS-VGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVK 647

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT ++Y+ ++     + +   A K+F EM+ D    VDI  + +L++G CR  L +EA  
Sbjct: 648 PTTVTYSIVLDGLFHAGRTSAAKKMFHEMI-DSGTAVDIDTYKILLKGLCRNDLTDEAIT 706

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +  ++       ++    ++ N +   R+  EA  L+  I
Sbjct: 707 LFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAI 746



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           T +K   +  R  + V +L  + R  D    P+ ++Y TV+ +L        A  ++  M
Sbjct: 196 TFLKCLCHAKRTDEAVDVL--LHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRM 253

Query: 278 TRIG--VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            + G     + +++N ++ G+ +Q ++ KA  L+ EM     +EPDVV+YN ++D     
Sbjct: 254 AKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKG-VEPDVVTYNSIVDALCKA 312

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A     +M  +G+ P  ++YT ++  ++ S   K + K+F +M     +   IV 
Sbjct: 313 RAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIP-GIVT 371

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +N  +   C+ G  ++A+ I + M   G  P++ +Y  L +G
Sbjct: 372 FNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHG 413



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 3/207 (1%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TY  ++    +A   D      A + R G+    I  N  LK  C   + D+A ++L   
Sbjct: 158 TYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHR 217

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAPTKISYTTLMKAFALS 370
             D    P+ +SYN +I        S  AL     M   G   +P  +S+ T++  F   
Sbjct: 218 MSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQ 277

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
            +   A  + +EM++   V+ D+V +N +V+  C+   +++A+ ++ +M + G  P+  T
Sbjct: 278 GEVSKACNLINEMVQKG-VEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLT 336

Query: 431 YGSLANGISLARKPGEALLLWKEIKER 457
           Y ++ +G S +    E+  +++++  +
Sbjct: 337 YTAIIHGYSCSGHWKESAKMFRKMTSK 363


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 231/516 (44%), Gaps = 65/516 (12%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY P    +ST+V+     G     E+V L D +V+              +PD    + +
Sbjct: 135 GYEPDTITFSTLVNGFCLEGR--VSEAVALVDRMVEM-----------KQRPDLVTVSTL 181

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G+  + L L D+M E+G +PD +TY  ++    ++    L + +  ++ E  I
Sbjct: 182 INGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNI 241

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEG 179
              +  +  ++ +    G  + A ++   M        K I+  D+  YSS      N+G
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEM------KGIKA-DVVTYSSLIGGLCNDG 294

Query: 180 DDDDDDEVFEKLLPNSINPS------------SEPPLL----------PKTFAPNSRIYT 217
             DD  ++  +++  +I P              E  LL           +  AP++  Y 
Sbjct: 295 KWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYN 354

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           +L+ G+  E  + +  +M   M  +      PD VTY+ ++++  KA  +D   ++  E+
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSK---GCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
           +  G+  N ITYN L+ G+CQ  +++ AKEL +EM     + P VV+Y IL+DG     +
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG-VPPSVVTYGILLDGLCDNGE 470

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              AL  F +M+   +      Y  ++     +S+   A  +F   L D  VK D+V +N
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS-LSDKGVKPDVVTYN 529

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +++ G C+ G + EA  +  +MKE+G  P+  TY  L      A   G  L+   E+ E 
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR----AHLGGSGLISSVELIE- 584

Query: 458 CEVKKEGVNADS-------DLPPPLKPDEELLDALA 486
            E+K  G +ADS       D+    + D+  LD L+
Sbjct: 585 -EMKVCGFSADSSTIKMVIDMLSDRRLDKSFLDMLS 619



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 127/286 (44%), Gaps = 18/286 (6%)

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +LG  +  E N    D  T T +++   +   +  A  VL    ++G   + IT++ L+ 
Sbjct: 89  VLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN 148

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C + ++ +A  L+  M  + K  PD+V+ + LI+G  L    + AL   + M   G  
Sbjct: 149 GFCLEGRVSEAVALVDRMV-EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 207

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P +++Y  ++     S    LA  +F +M  +  +K  +V ++++++  C+ G  ++A  
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQYSIVIDSLCKDGSFDDALS 266

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +   M+  G   +V TY SL  G+    K  +   + +E+  R                 
Sbjct: 267 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR----------------N 310

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + PD     AL D+ V+     +A E+   M   GI P+   Y  +
Sbjct: 311 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 356


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/543 (23%), Positives = 221/543 (40%), Gaps = 80/543 (14%)

Query: 32   VKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91
            +KL D +     K  D  + S+  P T  +N +L + A LG       ++ ++++ G +P
Sbjct: 925  IKLNDAI-----KLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQP 979

Query: 92   DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG----------- 140
            D+ T N++I  C           V    L+ G      T  +LV                
Sbjct: 980  DLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLF 1039

Query: 141  --------FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL 192
                     GD +    ++  + + R+    I      E      +GD      + + L 
Sbjct: 1040 DEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLH---EKMKGNCKGDVFTYGMIIDALC 1096

Query: 193  PNSINPSSE---PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE------ 243
             + +   +      ++     P+  +Y++LM G    GR+ + +     M  +       
Sbjct: 1097 KDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVY 1156

Query: 244  --------------------------DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
                                      D    PD  T+T ++  L K G +  A+Q+L  M
Sbjct: 1157 TYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELM 1216

Query: 278  TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
               G   + +TYN L+ G C   Q++ A +L   +AD   I+ +V SYNILI+G+     
Sbjct: 1217 RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRG-IKLNVFSYNILINGYCKDQK 1275

Query: 338  SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
               A  FF EMR +G+ P+ ++Y TL+ A   S + + A K+F EM    +  + +  + 
Sbjct: 1276 IDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQF-LKLSTYC 1334

Query: 398  MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +L++G C+ G +EEA  + + +K+    PN+  +  L +G+  A K  EA   WK+    
Sbjct: 1335 VLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEA---WKQFD-- 1389

Query: 458  CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             E+ K G          L+PD    + L +         +A++++  MEE G  P+   +
Sbjct: 1390 -EISKNG----------LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITF 1438

Query: 518  KKI 520
              I
Sbjct: 1439 NVI 1441



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 174/407 (42%), Gaps = 65/407 (15%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD   Y+++++     G+ K+ L+ F +M   G   DV TYN +I   +RA     + + 
Sbjct: 1118 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF 1177

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            L  +++ G +    TF  L+      G +  A+ I++ MR          +E D+  Y++
Sbjct: 1178 LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKG-------KEPDILTYNT 1230

Query: 176  ENE-----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                    G  +D  ++FE L    I               N   Y  L+ GY  + ++ 
Sbjct: 1231 LMNGLCLVGQLEDATKLFESLADRGIK-------------LNVFSYNILINGYCKDQKID 1277

Query: 231  DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
            +  R    MR +      P  VTY T++ AL ++G +  A+++  EM   G      TY 
Sbjct: 1278 EAFRFFEEMRPK---GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYC 1334

Query: 291  ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            +LL G C+   +++A +L + +    + +P++  ++IL+DG         A   F+E+  
Sbjct: 1335 VLLDGLCKNGHLEEAMDLFQSIK-KTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISK 1393

Query: 351  RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             G+ P                                    D +A+N+L+ G C  G++ 
Sbjct: 1394 NGLEP------------------------------------DTIAYNILINGLCNKGMLS 1417

Query: 411  EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            EA +++ +M+E G  P+  T+  +   +    +  EA+ L +E++ R
Sbjct: 1418 EAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNR 1464



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 31/277 (11%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M   G  P +  ++T+++ L   G     ++ KLF+ +  R  K            +  +
Sbjct: 1216 MRHKGKEPDILTYNTLMNGLCLVGQ--LEDATKLFESLADRGIKL-----------NVFS 1262

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            YN ++N      K  +  + F++M   G KP  +TYN +I    ++ R      +   + 
Sbjct: 1263 YNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQ 1322

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              G  L ++T+  L+      G LE A  + Q++++        +  + L+       G 
Sbjct: 1323 TCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMC--RAGK 1380

Query: 181  DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             ++  + F+++  N +              P++  Y  L+ G  N+G +S+ V++L  M 
Sbjct: 1381 LEEAWKQFDEISKNGLE-------------PDTIAYNILINGLCNKGMLSEAVKLLWQM- 1426

Query: 241  RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
              E+    PD +T+  ++  L+K   +  A Q+L EM
Sbjct: 1427 --EEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEM 1461


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 220/463 (47%), Gaps = 49/463 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+   +ST+++ L    ++G V+     D++ + + K  +P + + + P TA 
Sbjct: 259 MVKEGCDPNSVTYSTLINGLC---NEGRVDEA--LDMLEEMIEKGIEPTVYTYTLPITAL 313

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
                     +   ++ ++L  +M + G +P+V TY  +I   +R  +  + + +  ++L
Sbjct: 314 --------CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 365

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC------KIIRELDLEDYS 174
           + G+     T+ +L+      G    A  I   M EG   +       +II+ L L    
Sbjct: 366 KEGLVPNTVTYNALINELCVGGRFSTALKIFHWM-EGHGSLANTQTYNEIIKGLCL---- 420

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               GD +    +FEK+L          PL      P    Y TL+ GY+ +G V++  R
Sbjct: 421 ---GGDIEKAMVLFEKMLKMG-------PL------PTVVTYNTLINGYLTKGNVNNAAR 464

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M+   +N   PD  TY  +VS   K G ++ A     EM   G+  N ++Y  L+ 
Sbjct: 465 LLDLMK---ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALID 521

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ +  ++D A  LL+ M ++    P+V SYN +I+G    +  + A    ++M  +G+ 
Sbjct: 522 GHSKDGKVDIALSLLKRM-EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLL 580

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  I+YTTL+     + + + A K+F +M    +   ++  ++ L+ G C+ G  +EA  
Sbjct: 581 PNVITYTTLIDGLCRNGRTQFAFKIFHDM-EKRKCLPNLYTYSSLIYGLCQEGKADEA-- 637

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             ERM E G  P + TY +L +G+    +  EA  L K++KER
Sbjct: 638 --ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKER 678



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 184/432 (42%), Gaps = 64/432 (14%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V+  R      + S  +P    +N ++N  +  GK ++   +  Q+ ++   PDV TY 
Sbjct: 178 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 237

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I    R     L   V +R+++ G      T+ +L+                      
Sbjct: 238 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLING-------------------- 277

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT--------- 208
              +C              NEG  D+  ++ E+++   I P+     LP T         
Sbjct: 278 ---LC--------------NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320

Query: 209 -------------FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                          PN + YT L+ G    G++   + +   M ++      P+ VTY 
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKE---GLVPNTVTYN 377

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            +++ L   G    A ++   M   G  AN  TYN ++KG C    I+KA  L  +M   
Sbjct: 378 ALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM 437

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + P VV+YN LI+G++   +   A    + M+  G  P + +Y  L+  F+   + + 
Sbjct: 438 GPL-PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLES 496

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A+  F EM+ +  +  + V++  L++G+ + G V+ A  +++RM+E G  PNV +Y ++ 
Sbjct: 497 ASFYFQEMV-ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVI 555

Query: 436 NGISLARKPGEA 447
           NG+S   +  EA
Sbjct: 556 NGLSKENRFSEA 567



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 187/442 (42%), Gaps = 71/442 (16%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
            L+ QM   G +P +LT+N +I + ++  +      +L +I +  ++  + T+ SL+  +
Sbjct: 184 NLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGH 243

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
               +L++A  +   M +                     EG D                 
Sbjct: 244 CRNRNLDLAFGVFDRMVK---------------------EGCD----------------- 265

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                       PNS  Y+TL+ G  NEGRV + + ML  M    +    P   TYT  +
Sbjct: 266 ------------PNSVTYSTLINGLCNEGRVDEALDMLEEMI---EKGIEPTVYTYTLPI 310

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           +AL      + A +++A M + G   N  TY  L+ G  +  +++ A  L  +M  +  +
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            P+ V+YN LI+   +    + AL  F+ M   G      +Y  ++K   L    + A  
Sbjct: 371 -PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMV 429

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F++ML+   +   +V +N L+ GY   G V  A R+++ MKENG  P+  TY  L +G 
Sbjct: 430 LFEKMLKMGPLPT-VVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF 488

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
           S   K   A   ++E+ E C     G+N     P P+        AL D   +      A
Sbjct: 489 SKWGKLESASFYFQEMVE-C-----GLN-----PNPVS-----YTALIDGHSKDGKVDIA 532

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
           L ++  MEE G  PN   Y  +
Sbjct: 533 LSLLKRMEEMGCNPNVESYNAV 554



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 205/476 (43%), Gaps = 60/476 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           ML+ G +P+   ++ +++ L   G               G + + + ++ ++K +    D
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423

Query: 48  PD--IVSDSK-------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            +  +V   K       P    YN ++N     G      +L D M E G +PD  TYN 
Sbjct: 424 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 483

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-- 156
           ++   ++  +     F  + ++E G+     ++ +L+  +   G ++IA ++++ M E  
Sbjct: 484 LVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMG 543

Query: 157 ---GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
                     +I  L  E+  SE E     D  V + LLPN I                 
Sbjct: 544 CNPNVESYNAVINGLSKENRFSEAE--KICDKMVEQGLLPNVIT---------------- 585

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTTL+ G    GR     ++   M +++     P+  TY++++  L + G  D A + 
Sbjct: 586 --YTTLIDGLCRNGRTQFAFKIFHDMEKRK---CLPNLYTYSSLIYGLCQEGKADEAER- 639

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF- 332
              M+ IG      TY+ L+ G C++ +  +A++L+++M +        + Y++LI    
Sbjct: 640 ---MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCK 696

Query: 333 -ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
            + +D    AL  F+ + A+G       Y  L+ A   + Q + A  +FD ML +     
Sbjct: 697 NLEVDH---ALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNML-EKEWNA 752

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           D + W +LV+G  + G ++   +++  M+   F PN+ TY  L   +S   K  E+
Sbjct: 753 DEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIES 808



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/518 (21%), Positives = 219/518 (42%), Gaps = 55/518 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V+ ++ ++S L+  G           +V +    K     +V    P+T  
Sbjct: 329 MKKRGCRPNVQTYTALISGLSRLGK---------LEVAIGLYHKMLKEGLV----PNTVT 375

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YNA++N     G+    L++F  M   G+  +  TYN +IK LC     +  +V + E++
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMV-LFEKM 434

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+MG    + T+ +L+  Y+  G++  A  ++  M+E   +  +      +  +S    G
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK--WG 492

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +     F++++   +N             PN   YT L+ G+  +G+V   + +L   
Sbjct: 493 KLESASFYFQEMVECGLN-------------PNPVSYTALIDGHSKDGKVDIALSLL--- 536

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +R E+   +P+  +Y  V++ L K      A ++  +M   G+  N ITY  L+ G C+ 
Sbjct: 537 KRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRN 596

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +   A ++  +M +  K  P++ +Y+ LI G        G       M   G  PT  +
Sbjct: 597 GRTQFAFKIFHDM-EKRKCLPNLYTYSSLIYGLC----QEGKADEAERMSEIGCEPTLDT 651

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+TL+       +   A ++  +M          + +++L+  +C+   V+ A +I   +
Sbjct: 652 YSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLI-AHCKNLEVDHALKIFHSI 710

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +  GF  +++ Y +L   +  A +  EA  L+                D+ L      DE
Sbjct: 711 EAKGFQLHLSIYRALICALCKAGQVEEAQALF----------------DNMLEKEWNADE 754

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            +   L D  ++       ++++  ME     PN   Y
Sbjct: 755 IVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 792



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 3/179 (1%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R+  PA+ I   +++K    + +I +  + L E++        + S N L+      +  
Sbjct: 122 RVFAPADHIRI-LMIKACRNEEEIRRVADFLNEISG-MGFGFSLYSCNTLLIQLAKFEMV 179

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
            GA   + +M   GI P+ +++ TL+   +   + + A  +  ++ +   +  D+  +  
Sbjct: 180 EGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYD-LSPDVFTYTS 238

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           L+ G+CR   ++ A  + +RM + G  PN  TY +L NG+    +  EAL + +E+ E+
Sbjct: 239 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 297


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 212/474 (44%), Gaps = 40/474 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V ++S ++  L   G  G  + +         +R  ++   V    PD  AY+ V
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDL---------LRMMAEGGAVCS--PDVVAYSTV 225

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G   K   LF +M + G  PD +TY+ ++    +A         L +++  G+
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+ +L+  Y   G  + A  + + MR  R  +   +  L +   S    G   + 
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR--RHSILPDVVTLSMLMGSLCKYGKIKEA 343

Query: 185 DEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYTTLMKG 222
            +VF+ +     NP            +++  L+  T           AP+   +  L+K 
Sbjct: 344 RDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 403

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           Y N G +   + +   MR   D+   PD VTY TV++AL + G MD A +   +M   GV
Sbjct: 404 YANCGMLDKAMIIFNEMR---DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGV 460

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             ++  Y+ L++G+C    + KAKEL+ E+ ++  +  D+V ++ +I+    +     A 
Sbjct: 461 APDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVFFSSIINNLCKLGRVMDAQ 519

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F+     G+ PT + Y+ LM  + L  + + A +VFD M+    ++ + V +  LV G
Sbjct: 520 NIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV-SAGIEPNDVVYGTLVNG 578

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           YC++G ++E   +   M + G  P+   Y  + +G+  A +   A + + E+ E
Sbjct: 579 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE 632



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 144/597 (24%), Positives = 239/597 (40%), Gaps = 128/597 (21%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 80  SAACRSGPALAVALFNRAASRAQ---GPRVLS---PTSHTYAILMDCCTRAHRPELALAF 133

Query: 81  FDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           F Q+   G + +++  N ++K  C        L  +L R  E+G    + ++  L+ +  
Sbjct: 134 FGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLC 193

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDDDEVFEKLLPN 194
             G    A+ +++ M EG   VC      D+  YS+       EGD +   ++F++++  
Sbjct: 194 DQGKSGQADDLLRMMAEGGA-VCSP----DVVAYSTVIDGFFKEGDVNKACDLFKEMVQR 248

Query: 195 SINP-----SSEPPLLPKTFA-----------------PNSRIYTTLMKGYMNEGRVSDT 232
            I P     SS    L K  A                 PN+  Y  L+ GY + G+  + 
Sbjct: 249 GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV------------------- 273
           VR+   MRR    +  PD VT + ++ +L K G +  AR V                   
Sbjct: 309 VRVFKEMRRH---SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIM 365

Query: 274 ---------LAEMTRI-------GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
                    L +MT +       G+  +  T+N+L+K Y     +DKA  +  EM D   
Sbjct: 366 LNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHG- 424

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           ++PDVV+Y  +I     I     A+  FN+M  +G+AP K +Y  L++ F        A 
Sbjct: 425 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 378 KVFDEMLR------------------------------DPRVKVDI----VAWNMLVEGY 403
           ++  E++                               D  V V +    V ++ML++GY
Sbjct: 485 ELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
           C +G +E+A R+ + M   G  PN   YG+L NG     +  E L L++E+         
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM--------- 595

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  L   +KP   L + + D    A     A      M E GI  NK  Y  +
Sbjct: 596 -------LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIV 645



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 195/468 (41%), Gaps = 72/468 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP+   ++ ++   +++G     E+V++F    K +R+ S         PD   
Sbjct: 280 MVNKGVLPNNWTYNNLIYGYSSTGQWK--EAVRVF----KEMRRHS-------ILPDVVT 326

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            + ++ +    GK K+   +FD M   G  P+V +Y +M+   A       +  + + +L
Sbjct: 327 LSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLML 386

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDV----------CKIIREL 168
             GI   + TF  L+ AY   G L+ A  I   MR+   + DV          C+I    
Sbjct: 387 GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRI---- 442

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP-PLLPKTFAPNSRIYTT--LMKGYMN 225
                     G  DD  E F +++   + P       L + F  +  +     L+   MN
Sbjct: 443 ----------GKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 492

Query: 226 EGR------VSDTVRMLGAMRRQEDNAS----------HPDHVTYTTVVSALVKAGSMDR 269
            G        S  +  L  + R  D  +          HP  V Y+ ++      G M++
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEK 552

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V   M   G+  N + Y  L+ GYC+  +ID+   L REM     I+P  + YNI+I
Sbjct: 553 ALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKG-IKPSTILYNIII 611

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------ 383
           DG      +  A   F+EM   GIA  K +Y  +++           N+ FDE       
Sbjct: 612 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGL-------FKNRCFDEAIFLFKE 664

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           LR   VK++I+  N ++ G  +   VEEAK +   +  +G  P V TY
Sbjct: 665 LRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTY 712



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 166/404 (41%), Gaps = 39/404 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+V +++ +++  A  G    V+   LFD+++                PD   
Sbjct: 350 MAMKGQNPNVFSYTIMLNGYATKG--CLVDMTDLFDLMLG-----------DGIAPDIYT 396

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A AN G   K + +F++M + G KPDV+TY  +I    R  +    +    +++
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----------DVCKIIREL 168
           + G+      +  L+  +   G L  A E I + M  G             ++CK+ R +
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 516

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLM 220
           D ++              V   +L +      +     + F         PN  +Y TL+
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLV 576

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY   GR+ + + +    R        P  + Y  ++  L +AG    A+    EMT  
Sbjct: 577 NGYCKIGRIDEGLSLF---REMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 633

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSA 339
           G+  N+ TYNI+L+G  +    D+A  L +E+ A + KI  ++++ N +I G        
Sbjct: 634 GIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI--NIITLNTMIAGMFQTRRVE 691

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            A   F  +   G+ P  ++Y+ ++         + A  +F  M
Sbjct: 692 EAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSM 735


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 194/416 (46%), Gaps = 36/416 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +N +L+      +  + L LF QM E   +P+V+T+  ++    R  R    V +
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E    +  ++    + D S 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIID-SL 265

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   D   +F ++         E  + P  F  NS I      G+ + GR SD  ++
Sbjct: 266 CKDGRHSDAQNLFTEM--------QEKGIFPDLFTYNSMIV-----GFCSSGRWSDAEQL 312

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ +   PD VTY  +++A VK G    A ++  EM   G+  N ITY+ ++ G
Sbjct: 313 LQEMLERKIS---PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +C+Q ++D A+ +   MA      P+++++N LIDG+     IDD    +   +EM   G
Sbjct: 370 FCKQNRLDAAEHMFYLMATKG-CSPNLITFNTLIDGYCGAKRIDD---GMELLHEMTETG 425

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +     +Y TL+  F L      A  +  EM+       DIV  + L++G C  G +++A
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP-DIVTCDTLLDGLCDNGKLKDA 484

Query: 413 KRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + + M++           NG  P+V TY  L +G+    K  EA  L++E+  R
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 201/466 (43%), Gaps = 45/466 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    + T+V  +   GD     +V   D++    RK  +   +S   P+   
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKIGD-----TVSALDLL----RKMEE---ISHIIPNVVI 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A++++    G+      LF +M E G  PD+ TYN MI     + R      +L+ +L
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I+  + T+ +L+ A+V  G    AE +   M   R  +   I       YSS  +G 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTIT------YSSMIDG- 369

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLL--PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                  F K   N ++ +     L   K  +PN   + TL+ GY    R+ D + +L  
Sbjct: 370 -------FCK--QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    +     D  TY T++      G ++ A  +L EM   G+  + +T + LL G C 
Sbjct: 421 MT---ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 299 QLQIDKAKELLREMADDAK----------IEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             ++  A E+ + M    K          +EPDV +YNILI G I       A   + EM
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RGI P  I+Y++++      S+   A ++FD M        ++V +  L+ GYC+ G 
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGR 596

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           V++   +   M   G   N  TY +L  G         AL +++E+
Sbjct: 597 VDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 210/512 (41%), Gaps = 98/512 (19%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQ 79
           V+  KL  VVV+  R    PD+V            + D  ++  ++    +  K    L 
Sbjct: 80  VDFCKLMGVVVRMER----PDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 135

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
            F ++ + G  PDV+T+N ++       R    + +  ++ E      + TF +L+    
Sbjct: 136 TFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
                          REGR     I+  + L D   E+                      
Sbjct: 196 ---------------REGR-----IVEAVALLDRMMED---------------------- 213

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH--PDHVTYTTV 257
                      P    Y T++ G     ++ DTV  L  +R+ E+  SH  P+ V Y+ +
Sbjct: 214 --------GLQPTQITYGTIVDGMC---KIGDTVSALDLLRKMEE-ISHIIPNVVIYSAI 261

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           + +L K G    A+ +  EM   G+  +  TYN ++ G+C   +   A++LL+EM  + K
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERK 320

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I PDVV+YN LI+ F+       A   ++EM  RGI P  I+Y++++  F   ++   A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +F  ++       +++ +N L++GYC    +++   ++  M E G   +  TY +L +G
Sbjct: 381 HMF-YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
             L      AL L +E+              S L P +   + LLD L D        + 
Sbjct: 440 FYLVGDLNAALDLLQEM------------ISSGLCPDIVTCDTLLDGLCD----NGKLKD 483

Query: 498 ALEIVACMEE-----------HGIPPNKTKYK 518
           ALE+   M++           +G+ P+   Y 
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 184/431 (42%), Gaps = 45/431 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P +  +++++    +SG     E  +L   +++R  K S         PD   
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAE--QLLQEMLER--KIS---------PDVVT 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++NA    GK  +  +L+D+M   G  P+ +TY+ MI    + +R      +   + 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF +L+  Y G   ++    ++  M E            D   Y++   G 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVA-------DTTTYNTLIHG- 439

Query: 181 DDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                      L   +N + +    ++     P+     TL+ G  + G++ D + M   
Sbjct: 440 ---------FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 239 MRRQEDN--ASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           M++ + +  ASHP      D  TY  ++S L+  G    A ++  EM   G+  + ITY+
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++ G C+Q ++D+A ++   M   +   P+VV++  LI+G+         L  F EM  
Sbjct: 551 SMIDGLCKQSRLDEATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI    I+Y TL+  F        A  +F EM+        I   NML   + +    E
Sbjct: 610 RGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK----E 665

Query: 411 EAKRIIERMKE 421
           E KR +  +++
Sbjct: 666 ELKRAVAMLEK 676



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 125/281 (44%), Gaps = 17/281 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++ E      D  ++T ++        +  A     ++T++G+  + +T+N LL G C +
Sbjct: 103 QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVE 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A  L  +M +     P+VV++  L++G         A+   + M   G+ PT+I+
Sbjct: 163 DRVSEALNLFHQMFE-TTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T++           A  +  +M     +  ++V ++ +++  C+ G   +A+ +   M
Sbjct: 222 YGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +E G +P++ TY S+  G   + +  +A  L +E+ ER                 + PD 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLER----------------KISPDV 325

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +AL +  V+   F +A E+   M   GI PN   Y  +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 18/202 (8%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P VV +  L+   + ++     ++ + +M  + I     S+T L+K F   S+   A   
Sbjct: 77  PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 136

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F ++ +   +  D+V +N L+ G C    V EA  +  +M E    PNV T+ +L NG+ 
Sbjct: 137 FGKITK-LGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
              +  EA+ L   + E                  L+P +     + D   +      AL
Sbjct: 196 REGRIVEAVALLDRMME----------------DGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 500 EIVACMEE-HGIPPNKTKYKKI 520
           +++  MEE   I PN   Y  I
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAI 261


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 203/466 (43%), Gaps = 46/466 (9%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D +P   +YNA+++   + G   +  +++ +M + G  PDV ++ + +K   + SR H  
Sbjct: 106 DCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAA 165

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC-----KIIRE 167
           + +L  +   G  + +  + ++V  +           +   M      +C     K++R 
Sbjct: 166 LRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRV 225

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           L         +GD  + +++ +K++   +              PN   Y   ++G    G
Sbjct: 226 LC-------KKGDVKECEKLLDKVIKRGV-------------LPNLFTYNLFIQGLCQRG 265

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            +   VRM+G +  Q      PD +TY  ++  L K      A   L +M   G+  +  
Sbjct: 266 ELDGAVRMVGCLIEQ---GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYN L+ GYC+   +  A+ ++ +   +  + PD  +Y  LIDG     ++  AL  FNE
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFV-PDQFTYRSLIDGLCHEGETNRALALFNE 381

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
              +GI P  I Y TL+K  +       A ++ +EM     +  ++  +N+LV G C+MG
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIP-EVQTFNILVNGLCKMG 440

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            V +A  +++ M   G++P++ T+  L +G S   K   AL    EI +        V  
Sbjct: 441 CVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL----EILD--------VML 488

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           D+ + P +     LL+ L     + + F   +E    M E G  PN
Sbjct: 489 DNGVDPDVYTYNSLLNGLC----KTSKFEDVMETYKTMVEKGCAPN 530



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/493 (22%), Positives = 203/493 (41%), Gaps = 72/493 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    ++T+++     G             +V+   +     + +   PD   
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGG-------------MVQLAERIVGDAVFNGFVPDQFT 358

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++   + G+  + L LF++    G KP+V+ YN +IK  +          +   + 
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMS 418

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+   + TF  LV      G +  A+ +V+ M                          
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM-------------------------- 452

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   + K + P+   +  L+ GY  + ++ + + +L  M 
Sbjct: 453 ------------------------ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML 488

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              DN   PD  TY ++++ L K    +   +    M   G   N  T+NILL+  C+  
Sbjct: 489 ---DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKIS 359
           ++D+A  LL EM + + + PD V++  LIDGF    D  GA T F +M  A  ++ +  +
Sbjct: 546 KLDEALGLLEEMKNKS-VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPT 604

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  ++ AF       +A K+F EM+ D  +  D   + ++V+G+C+ G V    + +  M
Sbjct: 605 YNIIIHAFTEKLNVTMAEKLFQEMV-DRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEM 663

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN--ADSDLPPPLKP 477
            ENGF P++ T G + N + +  +  EA  +   + ++  V  E VN   D D      P
Sbjct: 664 MENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLV-PEAVNTICDVDKKEVAAP 722

Query: 478 DEELLDALADICV 490
              L D L   C+
Sbjct: 723 KLVLEDLLKKSCI 735



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 210/461 (45%), Gaps = 38/461 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML SG    +  ++ ++  L   GD    E  KL D V+KR              P+   
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECE--KLLDKVIKR-----------GVLPNLFT 253

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YN  +      G+    +++   + E G KPDV+TYN +I  LC  +  +   V+ L ++
Sbjct: 254 YNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY-LGKM 312

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSENE 178
           +  G+     T+ +L+A Y   G +++AE IV  A+  G        R L ++     +E
Sbjct: 313 VNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL-IDGLC--HE 369

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G+ +    +F + L   I              PN  +Y TL+KG  N+G + +  ++   
Sbjct: 370 GETNRALALFNEALGKGIK-------------PNVILYNTLIKGLSNQGMILEAAQLANE 416

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    +    P+  T+  +V+ L K G +  A  ++  M   G   +  T+NIL+ GY  
Sbjct: 417 M---SEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYST 473

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           QL+++ A E+L  M D+  ++PDV +YN L++G          +  +  M  +G AP   
Sbjct: 474 QLKMENALEILDVMLDNG-VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLF 532

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++  L+++     +   A  + +EM ++  V  D V +  L++G+C+ G ++ A  +  +
Sbjct: 533 TFNILLESLCRYRKLDEALGLLEEM-KNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591

Query: 419 MKEN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           M+E      +  TY  + +  +       A  L++E+ +RC
Sbjct: 592 MEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 23/307 (7%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +Y   MK Y  +G+V + V +     R +     P   +Y  ++S LV +G  D+A +V 
Sbjct: 78  VYVGAMKNYGRKGKVQEAVNVF---ERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY 134

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M   G+  +  ++ I +K +C+  +   A  LL  M+     E +VV+Y  ++ GF  
Sbjct: 135 MRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG-CEMNVVAYCTVVGGFYE 193

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            +  A     F +M A G++    ++  L++        K   K+ D++++   V  ++ 
Sbjct: 194 ENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG-VLPNLF 252

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-LLLWKE 453
            +N+ ++G C+ G ++ A R++  + E G  P+V TY +L  G+    K  EA + L K 
Sbjct: 253 TYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKM 312

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           + E                  L+PD    + L     +    + A  IV     +G  P+
Sbjct: 313 VNE-----------------GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPD 355

Query: 514 KTKYKKI 520
           +  Y+ +
Sbjct: 356 QFTYRSL 362



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 173/415 (41%), Gaps = 46/415 (11%)

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEG 179
           E+G    ++T++S++     +G  E  E ++  MRE   + + + +    +++Y    +G
Sbjct: 33  EVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGR--KG 90

Query: 180 DDDDDDEVFEKLLPNSINPS--SEPPLLP--------------------KTFAPNSRIYT 217
              +   VFE++      P+  S   ++                     +   P+   +T
Sbjct: 91  KVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
             MK +    R    +R+L  M  Q       + V Y TVV    +        ++  +M
Sbjct: 151 IRMKSFCKTSRPHAALRLLNNMSSQ---GCEMNVVAYCTVVGGFYEENFKAEGYELFGKM 207

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              GV     T+N LL+  C++  + + ++LL ++     + P++ +YN+ I G     +
Sbjct: 208 LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG-VLPNLFTYNLFIQGLCQRGE 266

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
             GA+     +  +G  P  I+Y  L+     +S+ + A     +M+ +  ++ D   +N
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG-LEPDSYTYN 325

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            L+ GYC+ G+V+ A+RI+     NGF P+  TY SL +G+    +   AL L+ E    
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEA--- 382

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                        L   +KP+  L + L           +A ++   M E G+ P
Sbjct: 383 -------------LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIP 424


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 203/482 (42%), Gaps = 90/482 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L + A +      L L  QM  FG  P++ T +++I      +R      V
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G      TF +L+                       R +C             
Sbjct: 119 LAKILKLGHQPDTATFTTLI-----------------------RGICV------------ 143

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K             ++ + F P+   Y TL+ G    G  S  +R+
Sbjct: 144 --EGKIGEALHLFDK-------------MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRL 188

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           LG+M ++      P+   Y T++ +L K   +  A  + +EM   G+  +  TYN L+  
Sbjct: 189 LGSMVQKN---CQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHA 245

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL EM  D+KI PDVVS+N ++D          A    ++M  RG+ P
Sbjct: 246 LCNLCEWKHVATLLNEMV-DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEP 304

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV------ 409
             ++YT LM    L S+   A KVFD M+    +  +++++N L+ GYC++  +      
Sbjct: 305 NVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMP-NVISYNTLINGYCKIQRIDKAIHY 363

Query: 410 -------------EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
                        +EA ++ + M   G  PNV +Y +L NG    ++  +A+ L+ E+  
Sbjct: 364 TXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMC- 422

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           R E+  + V   S L   L   E L DA+       A F    E+VAC +     PN   
Sbjct: 423 RQELIPDTVTY-STLIHGLCHVERLQDAI-------ALFH---EMVACSQ----IPNLVT 467

Query: 517 YK 518
           Y+
Sbjct: 468 YR 469



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 211/509 (41%), Gaps = 100/509 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P V  + T+++ L   G+     +++L   +V++           + +P+  A
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSA--AIRLLGSMVQK-----------NCQPNVFA 203

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN ++++     +  +   LF +M   G  PD+ TYN +I  LC     KH+   +L  +
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVAT-LLNEM 262

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++  I   + +F ++V A    G +  A  +V  M +  R V     E ++  Y++  +G
Sbjct: 263 VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQ--RGV-----EPNVVTYTALMDG 315

Query: 180 -----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                + D+  +VF+ ++              K   PN   Y TL+ GY    R+     
Sbjct: 316 HCLLSEMDEAVKVFDTMVC-------------KGCMPNVISYNTLINGYCKIQRI----- 357

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                    D A H     YT ++       +MD A +V   M   G   N I+YN L+ 
Sbjct: 358 ---------DKAIH-----YTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLIN 403

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+  +IDKA  L  EM     I PD V+Y+ LI G   ++    A+  F+EM A    
Sbjct: 404 GYCKIQRIDKAMYLFGEMCRQELI-PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQI 462

Query: 355 PTKISYTTLMKAFA-------------------LSSQPKLANKVFDEMLRDPRVKV---- 391
           P  ++Y  L+                       L    ++ N   D M R   ++     
Sbjct: 463 PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDL 522

Query: 392 -----------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                      D+  +++++ G CR GL++EA ++   M ENG   N   Y ++  G   
Sbjct: 523 FSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLR 582

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADS 469
             +   A+ L +E+  R      G +AD+
Sbjct: 583 NNETSRAIQLLQEMVAR------GFSADA 605



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 198/482 (41%), Gaps = 90/482 (18%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PDTA +  ++      GK  + L LFD+M   G +PDV+TY  +I    +       + 
Sbjct: 128 QPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIR 187

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +++          Q  V AY          TI+ ++       CK           
Sbjct: 188 LLGSMVQ-------KNCQPNVFAY---------NTIIDSL-------CK----------- 213

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                    D +V E     + N  SE  ++ K  +P+   Y +L+    N         
Sbjct: 214 ---------DRQVTE-----AFNLFSE--MVTKGISPDIFTYNSLIHALCNLCEWKHVAT 257

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M    D+   PD V++ TVV AL K G +  A  V+ +M + GV  N +TY  L+ 
Sbjct: 258 LLNEM---VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMD 314

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-------------LIDDSAG- 340
           G+C   ++D+A ++   M     + P+V+SYN LI+G+              L+D     
Sbjct: 315 GHCLLSEMDEAVKVFDTMVCKGCM-PNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCY 373

Query: 341 -----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+  F+ M  +G  P  ISY TL+  +    +   A  +F EM R   +  D V 
Sbjct: 374 LNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIP-DTVT 432

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L+ G C +  +++A  +   M      PN+ TY  L + +   R   EA+ L K I 
Sbjct: 433 YSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAI- 491

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                  EG N D        PD ++ +   D   RA     A ++ + +   G+ P+  
Sbjct: 492 -------EGSNLD--------PDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVW 536

Query: 516 KY 517
            Y
Sbjct: 537 TY 538



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/442 (19%), Positives = 179/442 (40%), Gaps = 91/442 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++    P+V A++T++  L    D    E+  LF  +V +              PD   
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCK--DRQVTEAFNLFSEMVTK-----------GISPDIFT 238

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLLVFVLE 117
           YN++++A  NL + K    L ++M +    PDV+++N ++  LC   + +  H    V++
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAH---DVVD 295

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDVCKI- 164
           ++++ G+   + T+ +L+  +    +++ A  +   M                   CKI 
Sbjct: 296 KMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQ 355

Query: 165 -----IRELDLED----YSSENEGDDDDDDEVFEKLLPNSINPSSE-------------- 201
                I    L D    Y + +E     D  V +  +PN I+ ++               
Sbjct: 356 RIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAM 415

Query: 202 ---PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM------------------- 239
                +  +   P++  Y+TL+ G  +  R+ D + +   M                   
Sbjct: 416 YLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYL 475

Query: 240 -------------RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
                        +  E +   PD       +  + +AG ++ AR + + ++  G+  + 
Sbjct: 476 CKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDV 535

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            TY+I++ G C++  +D+A +L REM D+     +   YN +  GF+  ++++ A+    
Sbjct: 536 WTYSIMINGLCRRGLLDEASKLFREM-DENGCTLNGCIYNTITRGFLRNNETSRAIQLLQ 594

Query: 347 EMRARGIAPTKISYTTLMKAFA 368
           EM ARG +    + T  +K  +
Sbjct: 595 EMVARGFSADASTMTLFVKMLS 616


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 188/435 (43%), Gaps = 90/435 (20%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           +  ++ ++ AC  L +     + FD M E G  P + T+N M+ L  + ++   +  +  
Sbjct: 166 SIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYA 225

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
            +  + I   + TF  ++      G L+ A+  + +M                     EN
Sbjct: 226 EMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM---------------------EN 264

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G                               PN   Y T++ GY + GRV     +L 
Sbjct: 265 LG-----------------------------VKPNVVTYNTVIHGYCSRGRVEGARMVLD 295

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M+ +      PD  TY +++S + K G ++ A  +L +M  IG+    +TYN L+ GYC
Sbjct: 296 IMKNR---GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYC 352

Query: 298 Q-----------------------------------QLQIDKAKELLREMADDAKIEPDV 322
                                               + ++D+A  ++++M D   I PD 
Sbjct: 353 NKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSG-IVPDS 411

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           ++YNILI+G+    ++  A    +EM ++GI PT ++YT+L+   +  ++ K A+ +F++
Sbjct: 412 ITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEK 471

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           ++R+     D++ +N L++G+C  G ++ A  +++ M +    P+  TY +L  G     
Sbjct: 472 IIREG-ASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREG 530

Query: 443 KPGEALLLWKEIKER 457
           K  EA  L KE+K R
Sbjct: 531 KVEEARELLKEMKRR 545



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 174/396 (43%), Gaps = 26/396 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   YN V++   + G+ +    + D M   G +PD  TY  +I    +  +      
Sbjct: 268 KPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASG 327

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +LE++ E+G+     T+ +L+  Y   GDL  A      M   RR +   +   +L  ++
Sbjct: 328 ILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMV--RRAILPTVSTYNLLIHA 385

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG  D+ D + + +  + I              P+S  Y  L+ GY   G       
Sbjct: 386 LFLEGKMDEADGMIKDMGDSGI-------------VPDSITYNILINGYCRCGNAKKAFN 432

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      P  VTYT+++  L K   M  A  +  ++ R G   + I +N L+ 
Sbjct: 433 LHDEMISK---GIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALID 489

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C    +D+A  LL+EM D   I PD V+YN L+ G         A     EM+ RGI 
Sbjct: 490 GHCANGNLDRAFALLKEM-DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIR 548

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEE 411
           P  ISY TL+  ++       A  + DEML    +P     ++ +N L++G C+    + 
Sbjct: 549 PDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPT----LLTYNALIQGLCKNQQGDL 604

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           A+ +++ M   G  P+ +TY SL  GI       EA
Sbjct: 605 AEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 185/439 (42%), Gaps = 65/439 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P    +NA+L+    L + +    L+ +M     K  V T+N+MI  LC     K    F
Sbjct: 199 PKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDF 258

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +   +  +G+   + T+ +++  Y   G +E A  ++  M+   R V     E D   Y 
Sbjct: 259 I-GSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKN--RGV-----EPDSYTYG 310

Query: 175 SE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           S        G  ++   + EK+         E  LLP         Y TL+ GY N+G  
Sbjct: 311 SLISGMCKGGKLEEASGILEKM--------KEIGLLPTAVT-----YNTLIDGYCNKG-- 355

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D V+  G        A  P   TY  ++ AL   G MD A  ++ +M   G+  + ITY
Sbjct: 356 -DLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITY 414

Query: 290 NILLKGYCQQLQIDKAKELLREM---------------------------ADD--AKI-- 318
           NIL+ GYC+     KA  L  EM                           ADD   KI  
Sbjct: 415 NILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIR 474

Query: 319 ---EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
               PD++ +N LIDG     +   A     EM  R I P +++Y TLM+      + + 
Sbjct: 475 EGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEE 534

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A ++  EM R   ++ D +++N L+ GY + G + +A  I + M   GF P + TY +L 
Sbjct: 535 ARELLKEMKRRG-IRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALI 593

Query: 436 NGISLARKPGEALLLWKEI 454
            G+   ++   A  L KE+
Sbjct: 594 QGLCKNQQGDLAEELLKEM 612



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 145/341 (42%), Gaps = 67/341 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R   LP V  ++ ++  L   G           D     ++   D  IV    PD+  
Sbjct: 367 MVRRAILPTVSTYNLLIHALFLEGK---------MDEADGMIKDMGDSGIV----PDSIT 413

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N     G  KK   L D+M   G +P ++TY  +I + ++ +R      + E+I+
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKII 473

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  +  F +L+  +   G+L+ A  +++ M +                        
Sbjct: 474 REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDK------------------------ 509

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     +   P+   Y TLM+G   EG+V +   +L  M+
Sbjct: 510 --------------------------RNIVPDEVTYNTLMQGRCREGKVEEARELLKEMK 543

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R+      PDH++Y T++S   K G ++ A  +  EM  IG     +TYN L++G C+  
Sbjct: 544 RR---GIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQ 600

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           Q D A+ELL+EM     I PD  +Y  LI+G   +DDS+ A
Sbjct: 601 QGDLAEELLKEMVSKG-ITPDDSTYFSLIEGIGKVDDSSEA 640



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 3/193 (1%)

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG  D   ++     R+G  ++ I +++L++  C+  + D A E   +M  +  + P + 
Sbjct: 145 AGVKDVFHELAITRDRLGTKSS-IVFDMLIRACCELKRGDDAFECF-DMMKEKGVVPKIE 202

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++N ++  F+ ++ +      + EM    I  T  ++  ++       + K A K F   
Sbjct: 203 TFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKA-KDFIGS 261

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + +  VK ++V +N ++ GYC  G VE A+ +++ MK  G  P+  TYGSL +G+    K
Sbjct: 262 MENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGK 321

Query: 444 PGEALLLWKEIKE 456
             EA  + +++KE
Sbjct: 322 LEEASGILEKMKE 334



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           +P+  S   L+K   + S+      VF E+   RD       + ++ML+   C +   ++
Sbjct: 126 SPSPKSTLHLLKQ-TIESRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDD 184

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A    + MKE G  P + T+ ++   +SL  K  +   +W    E   +K          
Sbjct: 185 AFECFDMMKEKGVVPKIETFNAM---LSLFLKLNQTETVWVLYAEMFRLK---------- 231

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +K      + + ++  +    +KA + +  ME  G+ PN   Y  +
Sbjct: 232 ---IKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTV 277


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 235/522 (45%), Gaps = 48/522 (9%)

Query: 23  SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFD 82
           SGD GP +++ LFD +++R R  S   I + ++  T    A +++    G P   + +F+
Sbjct: 75  SGDLGPEDALDLFDELLQRARPGS---IYALNQLLTTVARAPVSSSVRDG-PALAVSMFN 130

Query: 83  QMHEFGAK---PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           +M   GAK   PD+ T+ ++I  C  A   +L    L +I++ G+     TF  L+    
Sbjct: 131 RMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRT-- 188

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG--DDDDDDEVFEKLLPNSIN 197
               L   +    AM    R + ++    D+  Y++  +G   +   +E  E +   + +
Sbjct: 189 ----LCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAED 244

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
             + PP        N   YTT++ G+  EG V     +   M    D+   P+ VT  +V
Sbjct: 245 GDNCPP--------NVVSYTTVIHGFFKEGDVGKAYTLFCKML---DHGIPPNVVTCNSV 293

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           +  L K  +MD+A  VL +M    +  N  TYN L+ GY    Q  +A  +L+EM+ D +
Sbjct: 294 IDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQ 353

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
             P+VV+Y++LID        A A   FN M   G  P   +Y +L+  +A        N
Sbjct: 354 -RPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMN 412

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            V D M+++  ++     +N+ +  YC+ G ++EA     +M++ GF P++  Y ++ +G
Sbjct: 413 NVKDLMVQNG-MRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDG 471

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +    +  +A+         C++  +G          L PD    + L         + K
Sbjct: 472 LCKIGRLDDAM------SRFCQMIDDG----------LSPDIITFNTLIHGFALHGKWEK 515

Query: 498 ALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
           A E+   M + GIPPN   +      M  ++F     ++AR+
Sbjct: 516 AEELFYEMMDRGIPPNVNTFN----SMIDKLFKEGKVTEARK 553



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 131/552 (23%), Positives = 234/552 (42%), Gaps = 78/552 (14%)

Query: 3   RSGYLPHVKAWSTVVSR--LAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           R G +  +    T V+R  +++S  DGP  +V +F+ + +   K   PDI        A 
Sbjct: 95  RPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAGAKKVAPDI--------AT 146

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           +  +++ C + G          Q+ + G +   +T+  +++ LCA       +  VL R+
Sbjct: 147 FGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNIVLRRM 206

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            E+G T  + ++ +L+         E A  ++  M E   +    +       +    EG
Sbjct: 207 PELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEG 266

Query: 180 DDDDDDEVFEKLL-----PNSINPSSEPPLLPKTFA-----------------PNSRIYT 217
           D      +F K+L     PN +  +S    L K  A                 PN   Y 
Sbjct: 267 DVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYN 326

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           +L+ GY++ G+ ++ VR+L  M R   +   P+ VTY+ ++  L K+G    AR++   M
Sbjct: 327 SLIHGYLSSGQWTEAVRILKEMSR---DGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSM 383

Query: 278 TRIGVPANRITYNILLKGY-----------------------------------CQQLQI 302
            + G   N  TY  LL GY                                   C+  ++
Sbjct: 384 IQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRL 443

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D+A     +M     + PD+V+Y  +IDG   I     A++ F +M   G++P  I++ T
Sbjct: 444 DEASLTFNKMQQQGFM-PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNT 502

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  FAL  + + A ++F EM+ D  +  ++  +N +++   + G V EA+++ + M   
Sbjct: 503 LIHGFALHGKWEKAEELFYEMM-DRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRA 561

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN----ADSDLPPPLKPD 478
           G  PNV +Y ++ +G  +A + GE + L  ++     +K   V      D  +   LKPD
Sbjct: 562 GAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML-LIGLKPTAVTFNTLLDGMVSMGLKPD 620

Query: 479 EELLDALADICV 490
                 L D C 
Sbjct: 621 VVTCKTLIDSCC 632



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 200/462 (43%), Gaps = 65/462 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V +++T++  L A  +    E+ +L  ++ +      D D   +  P+  +Y  V
Sbjct: 210 GCTPDVFSYTTLLKGLCA--EKKCEEAAELIHMMAE------DGD---NCPPNVVSYTTV 258

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G   K   LF +M + G  P+V+T N +I    +         VL+++++  I
Sbjct: 259 IHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHI 318

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDD 183
               TT+ SL+  Y+  G    A  I++ M R+G+R    ++    L D   ++ G   +
Sbjct: 319 MPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP--NVVTYSMLIDCLCKS-GLHAE 375

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT-----VRMLGA 238
             E+F     NS+  S + P        N+  Y +L+ GY  EG + D      + +   
Sbjct: 376 AREIF-----NSMIQSGQKP--------NASTYGSLLHGYATEGNLVDMNNVKDLMVQNG 422

Query: 239 MR---------------------------RQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           MR                           + +     PD V YTTV+  L K G +D A 
Sbjct: 423 MRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAM 482

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
               +M   G+  + IT+N L+ G+    + +KA+EL  EM D   I P+V ++N +ID 
Sbjct: 483 SRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRG-IPPNVNTFNSMIDK 541

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                    A   F+ M   G  P  +SY T++  + ++ +     K+ D+ML    +K 
Sbjct: 542 LFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLL-IGLKP 600

Query: 392 DIVAWNMLVEGYCRMGL---VEEAKRIIERMKENGFYPNVAT 430
             V +N L++G   MGL   V   K +I+   E+G   ++ T
Sbjct: 601 TAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILT 642



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/351 (19%), Positives = 140/351 (39%), Gaps = 53/351 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P+V  +S ++  L  SG     E+ ++F+ +++           S  KP+ + 
Sbjct: 348 MSRDGQRPNVVTYSMLIDCLCKSGLHA--EAREIFNSMIQ-----------SGQKPNAST 394

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++L+  A  G       + D M + G +P    +N+ I    +  R         ++ 
Sbjct: 395 YGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQ 454

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAET-IVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           + G    +  + +++      G L+ A +   Q + +G   +   I   +   +     G
Sbjct: 455 QQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDG---LSPDIITFNTLIHGFALHG 511

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +  +E+F +++   I              PN   + +++     EG+V++  ++   M
Sbjct: 512 KWEKAEELFYEMMDRGI-------------PPNVNTFNSMIDKLFKEGKVTEARKLFDLM 558

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY--- 296
            R     + P+ V+Y T++     AG +    ++L +M  IG+    +T+N LL G    
Sbjct: 559 PRA---GAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSM 615

Query: 297 ----------------CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
                           C+  +I+    L REM   A  + D ++ NI + G
Sbjct: 616 GLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKAD-KTDTITENIKLRG 665


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 203/460 (44%), Gaps = 47/460 (10%)

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M   G  PDV TY+ +I+   +         V+E + E G +L + T+ +L+      G 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203
           +E A    + M                EDY    +G       +   L      P     
Sbjct: 294 IEEAFGYKKEM----------------EDYGLVPDGFTYG--AIINGLCKRG-RPDQAKC 334

Query: 204 LLPKT----FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
           LL +       PN  +Y+TL+ G+M +G   +  +++  M         P+ +TY  ++ 
Sbjct: 335 LLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAA---GVQPNKITYDNLIR 391

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L K G M RA ++L +MT+IG  A+ +TYN++++G+ +Q   ++A  LL EM     I 
Sbjct: 392 GLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGG-IS 450

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+V +Y+I+I+G   I +S  A     +M A G+ P    Y  L+  +       LA + 
Sbjct: 451 PNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACET 510

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             +M R+  +  D+  +N L+ G   +G ++EA    + M E GF PN  TYG L +G S
Sbjct: 511 LKKMTRE-NLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYS 569

Query: 440 LAR--KPGEALL-------------LWKEIKERC----EVKKEGVNADSDLPPPLKPDEE 480
           +A   +  E LL             ++ +I E       ++K      S L   L PD  
Sbjct: 570 MAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNR 629

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L   +      +   + A+ +++ +E++G+ P+   Y  +
Sbjct: 630 LYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSL 669



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/545 (22%), Positives = 226/545 (41%), Gaps = 105/545 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G +P+V  +ST++      G+          D   K V++ S   +    +P+   
Sbjct: 339 MSCAGLMPNVVVYSTLIDGFMRQGNA---------DEAFKIVKEMSAAGV----QPNKIT 385

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++     LG+  +  ++  QM + G   D +TYN++I+   R   K     +L  + 
Sbjct: 386 YDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMR 445

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--------------------REGRRD 160
           + GI+  + T+  ++      G+ E A  +++ M                    REG   
Sbjct: 446 KGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFS 505

Query: 161 V-CKIIREL-------DLEDYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEP----- 202
           + C+ ++++       DL  Y+S      N G  D+  E ++++L     P+        
Sbjct: 506 LACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLI 565

Query: 203 -----------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                             +L     PN  IY  +++GY     +      L +M  +   
Sbjct: 566 HGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEK--- 622

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD+  Y  V+  L  +G M  A  VL+ + + G+  + + Y  L+ G+C+   ++KA
Sbjct: 623 GLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKA 682

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             LL EMA    IEP +  YN LIDGF   DD + A   FN +  +G+ P  ++YTTL+ 
Sbjct: 683 VGLLDEMAKKG-IEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLID 741

Query: 366 AFALSSQPKLANKVFDEMLRD---------------------------------PRVKVD 392
            +  +   + A  +++EML +                                  R    
Sbjct: 742 GYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI 801

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           I ++N LV G+C+ G ++E  + +  M +    P++ T  ++  G+  A K  EA  ++ 
Sbjct: 802 ISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFV 861

Query: 453 EIKER 457
           E++++
Sbjct: 862 ELQQK 866



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/491 (22%), Positives = 193/491 (39%), Gaps = 59/491 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y A++N     G+P +   L D+M   G  P+V+ Y+ +I    R         +
Sbjct: 311 PDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKI 370

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++ +   G+     T+ +L+      G +  A  I++ M        KI    D   Y+ 
Sbjct: 371 VKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMT-------KIGYMADTMTYNL 423

Query: 176 ENEGD--DDDDDEVFEKLLPNSINPSSEPP-----------------------LLPKTFA 210
             EG     + +E F  LL N +      P                       LL +  A
Sbjct: 424 VIEGHLRQHNKEEAF--LLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIA 481

Query: 211 ----PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
               PN+ +Y  L+ GY  EG  S     L  M R+      PD   Y +++  L   G 
Sbjct: 482 DGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLT---PDLYCYNSLIIGLSNVGK 538

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           MD A +   EM   G   N  TY  L+ GY     ++KA++LL +M +   + P+   Y 
Sbjct: 539 MDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSG-LNPNDFIYA 597

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +++G+   D+     +    M  +G+ P    Y  ++   + S   + A  V   + ++
Sbjct: 598 QILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKN 657

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V  D + +  L+ G+C+   +E+A  +++ M + G  P ++ Y +L +G   +     
Sbjct: 658 GLVP-DSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISH 716

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  ++  I  +             LPP       L+D       +A   R A+++   M 
Sbjct: 717 ARNIFNSIICK------------GLPPNCVTYTTLIDGYC----KAGDIRDAIDLYNEML 760

Query: 507 EHGIPPNKTKY 517
             G+ P+   Y
Sbjct: 761 TEGVAPDAFVY 771



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 151/351 (43%), Gaps = 56/351 (15%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            AP+ R    L+K  +    +    ++ G M   E     PD  TY+T++ A  K   ++
Sbjct: 204 LAPSLRCCNGLLKDLLRADALDLLWKVRGFM---EGAGISPDVYTYSTLIEAYCKVRDLE 260

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQI-------------------------- 302
            A++V+ EM   G   N +TYN L+ G C+   I                          
Sbjct: 261 SAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAII 320

Query: 303 ---------DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
                    D+AK LL EM+  A + P+VV Y+ LIDGF+   ++  A     EM A G+
Sbjct: 321 NGLCKRGRPDQAKCLLDEMS-CAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGV 379

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P KI+Y  L++      +   A+++  +M +   +  D + +N+++EG+ R    EEA 
Sbjct: 380 QPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYM-ADTMTYNLVIEGHLRQHNKEEAF 438

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            ++  M++ G  PNV TY  + NG+    + GE+        ER     E + AD     
Sbjct: 439 LLLNEMRKGGISPNVYTYSIIINGLC---QIGES--------ERASGLLEQMIADG---- 483

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            LKP+  +   L     R   F  A E +  M    + P+   Y  + + +
Sbjct: 484 -LKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGL 533



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/466 (17%), Positives = 179/466 (38%), Gaps = 88/466 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+   ++ ++S     G          F +  + ++K +  ++     PD   
Sbjct: 479 MIADGLKPNAFVYAPLISGYCREGS---------FSLACETLKKMTRENLT----PDLYC 525

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++   +N+GK  + ++ +D+M E G +P+  TY  +I   + A        +L ++L
Sbjct: 526 YNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML 585

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+      +  ++  Y    +LE   + +++M E  + +    R   +  ++  + G 
Sbjct: 586 NSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLE--KGLMPDNRLYGIVIHNLSSSGH 643

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 V   +  N +              P+S IY +L+ G+    + +D  + +G + 
Sbjct: 644 MQAAVSVLSVIEKNGL-------------VPDSLIYGSLISGFC---KAADMEKAVGLLD 687

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   P    Y  ++    K+  +  AR +   +   G+P N +TY  L+ GYC+  
Sbjct: 688 EMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAG 747

Query: 301 QIDKAKELLREMADDAKIEPD----------------------------------VVSYN 326
            I  A +L  EM  +  + PD                                  + S+N
Sbjct: 748 DIRDAIDLYNEMLTEG-VAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFN 806

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE---- 382
            L+ GF         + F + M  + I P+ ++   ++     + +   A+ +F E    
Sbjct: 807 TLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQK 866

Query: 383 ----------------MLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
                           M+    V +D++  + +++ +C+ G +++A
Sbjct: 867 NASHRDTDHLSSLFTDMINQGLVPLDVI--HNMIQSHCKQGYLDKA 910


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 184/394 (46%), Gaps = 57/394 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   Y +++N     G  ++ L+LF++    G KPD++ YN ++K LC +    H L  
Sbjct: 326 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQ- 384

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V+  + E G    + T+  ++      G++  A  ++                       
Sbjct: 385 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVM----------------------- 421

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                    +D + +  LP+                     + TL+ GY    ++   ++
Sbjct: 422 ---------NDAIMKGYLPDVFT------------------FNTLIDGYCKRLKLDSALQ 454

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++    R  +    PD +TY +V++ L KAG ++   +   EM   G   N ITYNIL++
Sbjct: 455 LV---ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIE 511

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C+  ++++A +++ +M+ +  + PD VS+N LI GF    D  GA   F ++  +G +
Sbjct: 512 NFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 570

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            T  ++ TL+ AF+      +A K+FDEML     + D   + +L++G C+   V+ A  
Sbjct: 571 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH-RADSYTYRVLIDGSCKTANVDRAYM 629

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            +  M + GF P+++T+G + N +++  +  +A+
Sbjct: 630 HLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAV 663



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 202/444 (45%), Gaps = 44/444 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +   P++ A++ V+  L   GD   +E+  L   V++R               +   
Sbjct: 180 MLHTHVFPNLAAFNKVLHALCKRGD--VLEAGLLLGKVIQRGMSI-----------NLFT 226

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN  +      G+  + ++L D M  + A PDV+TYN +I+   + S     +  L R++
Sbjct: 227 YNIWIRGLCEAGRLPEAVRLVDGMRAY-AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 285

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG----RRDVCKIIRELDLEDYSS 175
             G      T+ +++  Y     + E  E +  A+ +G    +   C +I  L       
Sbjct: 286 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLC------ 339

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EGD +   E+F +     I P             +  +Y +L+KG   +G +   +  
Sbjct: 340 -AEGDVERALELFNEAQAKGIKP-------------DIVVYNSLVKGLCLQGLI---LHA 382

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M    +   HPD  TY  V++ L K G++  A  V+ +    G   +  T+N L+ G
Sbjct: 383 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 442

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++L++D A +L+  M +   I PD ++YN +++G             F EM  +G  P
Sbjct: 443 YCKRLKLDSALQLVERMWEYG-IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHP 501

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y  L++ F  S++ + A+KV  +M ++  +  D V++N L+ G+CR G +E A  +
Sbjct: 502 NPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDLEGAYLL 560

Query: 416 IERMKENGFYPNVATYGSLANGIS 439
            ++++E G+     T+ +L    S
Sbjct: 561 FQKLEEKGYSATADTFNTLIGAFS 584



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/518 (23%), Positives = 212/518 (40%), Gaps = 87/518 (16%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A + A A  G+ +  +  F++M  F   P    YN ++     A+       V  R+L
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 115

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
             G++  + T    + ++       IA  +++A+   G    C ++  L    Y+    G
Sbjct: 116 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL----YA---HG 168

Query: 180 DDDDDDEVFEKLLPNSINPSS-----------------EPPLL-----PKTFAPNSRIYT 217
              D  ++F+++L   + P+                  E  LL      +  + N   Y 
Sbjct: 169 HTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN 228

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
             ++G    GR+ + VR++  MR      + PD VTY T++  L K      A   L  M
Sbjct: 229 IWIRGLCEAGRLPEAVRLVDGMRAY----AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRM 284

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              G   +  TYN ++ GYC+   + +A ELL++      + PD V+Y  LI+G     D
Sbjct: 285 MNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV-PDQVTYCSLINGLCAEGD 343

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKV--- 391
              AL  FNE +A+GI P  + Y +L+K   L      A +V +EM  +   P ++    
Sbjct: 344 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNI 403

Query: 392 ----------------------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
                                       D+  +N L++GYC+   ++ A +++ERM E G
Sbjct: 404 VINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG 463

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKKEGVNADSDLPPPLKPDEELL 482
             P+  TY S+ NG+  A K  E    ++E I + C             P P+       
Sbjct: 464 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH------------PNPIT-----Y 506

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + L +   R+    +A +++  M + G+ P+   +  +
Sbjct: 507 NILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 544



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L P T  P   +Y   ++ Y   GR+ D V    A  R +  A  P    Y  ++ ALV 
Sbjct: 47  LSPATIHP---LYVASIRAYARAGRLRDAV---DAFERMDLFACPPAAPAYNAIMDALVD 100

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A   D+A +V   M   GV  +  T+ I L+ +C   +   A  LLR +          V
Sbjct: 101 AAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG-----AV 155

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  ++ G      +  A   F++M    + P   ++  ++ A         A  +  ++
Sbjct: 156 AYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 215

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++   + +++  +N+ + G C  G + EA R+++ M+     P+V TY +L  G+     
Sbjct: 216 IQRG-MSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSM 273

Query: 444 PGEAL 448
           P EA+
Sbjct: 274 PQEAM 278



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 67/319 (21%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GYLP V  ++T++        DG  + +KL D  ++ V +  +  I     PDT  YN+V
Sbjct: 428 GYLPDVFTFNTLI--------DGYCKRLKL-DSALQLVERMWEYGIA----PDTITYNSV 474

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           LN     GK  +  + F +M   G  P+ +TYN++I+   R+++      V+ ++ + G+
Sbjct: 475 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 534

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                +F +L+  +   GDLE A  + Q + E                            
Sbjct: 535 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEE---------------------------- 566

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                                 K ++  +  + TL+  +  +  +    ++   M  +  
Sbjct: 567 ----------------------KGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH 604

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
            A   D  TY  ++    K  ++DRA   L EM + G   +  T+  ++       ++ +
Sbjct: 605 RA---DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQ 661

Query: 305 AKELLREMADDAKIEPDVV 323
           A  ++  M     + P+VV
Sbjct: 662 AVGIIHIMVKIGVV-PEVV 679


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 213/474 (44%), Gaps = 40/474 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V ++S ++  L   G  G  + +         +R  ++   V    PD  AYN V
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDL---------LRMMAEGGAVC--SPDVVAYNTV 225

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G   K   LF +M + G  PD +TY+ ++    +A         L +++  G+
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+ +L+  Y   G  + A  + + MR  R+ +   +   ++   S    G   + 
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR--RQSILPDVVTFNMLMGSLCKYGKIKEA 343

Query: 185 DEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYTTLMKG 222
            +VF+ +     NP            +++  L+  T           AP    +  L+K 
Sbjct: 344 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKA 403

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           Y N G +   + +   MR   D+   P+ +TYTTV++AL + G MD A +   +M   GV
Sbjct: 404 YANCGMLDKAMIIFNEMR---DHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGV 460

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             ++  Y+ L++G+C    + KAKEL+ E+ ++  +  D+V ++ +I+    +     A 
Sbjct: 461 APDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVLFSSIINNLCKLGRVMDAQ 519

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F+     G+ PT + Y+ LM  + L  + + A +VFD M+    ++ + V +  LV G
Sbjct: 520 NIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV-SAGIEPNDVVYGTLVNG 578

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           YC++G ++E   +   M + G  P+   Y  + +G+  A +   A + + E+ E
Sbjct: 579 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE 632



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 195/456 (42%), Gaps = 48/456 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP+   ++ ++   +++G     E+V++F    K +R+ S         PD   
Sbjct: 280 MVNKGVLPNNWTYNNLIYGYSSTGQWK--EAVRVF----KEMRRQS-------ILPDVVT 326

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ +    GK K+   +FD M   G  PDV +YN+M+   A       +  + + +L
Sbjct: 327 FNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML 386

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + TF  L+ AY   G L+ A  I   MR+    V   +        +    G 
Sbjct: 387 GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRD--HGVKPNVLTYTTVIAALCRIGK 444

Query: 181 DDDDDEVFEKLLPNSINPSSEP-PLLPKTFAPNSRIYTT--LMKGYMNEGR------VSD 231
            DD  E F +++   + P       L + F  +  +     L+   MN G        S 
Sbjct: 445 MDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSS 504

Query: 232 TVRMLGAMRRQEDNAS----------HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
            +  L  + R  D  +          HP  V Y+ ++      G M++A +V   M   G
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           +  N + Y  L+ GYC+  +ID+   L REM     I+P  + YNI+IDG      +  A
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKG-IKPSTILYNIIIDGLFEAGRTVPA 623

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------LRDPRVKVDIVA 395
              F+EM   GIA  K +Y+ +++           N+ FDE       LR   VK+DI+ 
Sbjct: 624 KVKFHEMTESGIAMNKCTYSIVLRGL-------FKNRCFDEAIFLFKELRAMNVKIDIIT 676

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
            N ++ G  +   VEEAK +   +  +G  P V TY
Sbjct: 677 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTY 712



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 143/597 (23%), Positives = 239/597 (40%), Gaps = 128/597 (21%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 80  SAACRSGPALAVALFNRAASRAQ---GPRVLS---PTSHTYAILMDCCTRAHRPELALAF 133

Query: 81  FDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           F Q+   G + D++  N ++K  C        L  +L R  E+G    + ++  L+ +  
Sbjct: 134 FGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLC 193

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDDDEVFEKLLPN 194
             G    A+ +++ M EG   VC      D+  Y++       EGD +   ++F++++  
Sbjct: 194 DQGKSGQADDLLRMMAEGGA-VCSP----DVVAYNTVIDGFFKEGDVNKACDLFKEMVQR 248

Query: 195 SINP-----SSEPPLLPKTFA-----------------PNSRIYTTLMKGYMNEGRVSDT 232
            I P     SS    L K  A                 PN+  Y  L+ GY + G+  + 
Sbjct: 249 GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV------------------- 273
           VR+   MRRQ   +  PD VT+  ++ +L K G +  AR V                   
Sbjct: 309 VRVFKEMRRQ---SILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIM 365

Query: 274 ---------LAEMTRI-------GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
                    L +MT +       G+     T+N+L+K Y     +DKA  +  EM D   
Sbjct: 366 LNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG- 424

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           ++P+V++Y  +I     I     A+  FN+M  +G+AP K +Y  L++ F        A 
Sbjct: 425 VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 378 KVFDEMLR------------------------------DPRVKVDI----VAWNMLVEGY 403
           ++  E++                               D  V V +    V ++ML++GY
Sbjct: 485 ELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
           C +G +E+A R+ + M   G  PN   YG+L NG     +  E L L++E+         
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM--------- 595

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  L   +KP   L + + D    A     A      M E GI  NK  Y  +
Sbjct: 596 -------LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIV 645



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 164/404 (40%), Gaps = 39/404 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V +++ +++  A  G    V+   LFD+++                P    
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKG--CLVDMTDLFDLMLG-----------DGIAPVICT 396

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A AN G   K + +F++M + G KP+VLTY  +I    R  +    +    +++
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI 456

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----------DVCKIIREL 168
           + G+      +  L+  +   G L  A E I + M  G             ++CK+ R +
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVM 516

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLM 220
           D ++              V   +L +      +          ++     PN  +Y TL+
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLV 576

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY   GR+ + + +    R        P  + Y  ++  L +AG    A+    EMT  
Sbjct: 577 NGYCKIGRIDEGLSLF---REMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 633

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSA 339
           G+  N+ TY+I+L+G  +    D+A  L +E+ A + KI  D+++ N +I G        
Sbjct: 634 GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI--DIITLNTMIAGMFQTRRVE 691

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            A   F  +   G+ P  ++Y+ ++         + A  +F  M
Sbjct: 692 EAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSM 735


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 21/311 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           +PN   Y  L++G+ + G +   +   G M R   N   P+ VTY T++ A  K G +D 
Sbjct: 7   SPNVYTYNILIRGFCSVGELQKGLGCFGEMER---NGCLPNVVTYNTLIDAYCKMGRIDE 63

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +L  M+  G+  N I+YN+++ G C++  + +A E+L EM       PD V+YN L+
Sbjct: 64  AFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTYNTLL 122

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G+    +   AL    EM   G++P+ ++YT L+ +   +     A + FD+M R   +
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM-RIRGL 181

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           + +   +  L++G+ R GL+ EA RI+  M E+GF P+V TY +  +G  +  +  EAL 
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 241

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           + +E+ E+                 L PD      +     R     +A ++   M E G
Sbjct: 242 VVQEMVEK----------------GLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 285

Query: 510 IPPNKTKYKKI 520
           + P+   Y  +
Sbjct: 286 VSPDAVTYSSL 296



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 209/470 (44%), Gaps = 50/470 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G LP+V  ++T++      G           D     ++  S   +    +P+  +
Sbjct: 36  MERNGCLPNVVTYNTLIDAYCKMGR---------IDEAFGLLKSMSSKGM----QPNLIS 82

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N     G  K+  ++ ++M   G  PD +TYN ++    +    H  + +   ++
Sbjct: 83  YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV 142

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL--DLEDYSSENE 178
             G++  + T+ +L+ +     +L  A      MR         IR L  +   Y++  +
Sbjct: 143 RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR---------IRGLRPNERTYTTLID 193

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G         + LL  +    +E  +    F+P+   Y   + G+    R+ +    LG 
Sbjct: 194 GFSR------QGLLNEAYRILNE--MTESGFSPSVVTYNAFIHGHCVLERMEEA---LGV 242

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           ++   +    PD V+Y+T++S   + G +DRA Q+  EM   GV  + +TY+ L++G C+
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 302

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ +A +L +EM  D  + PD  +Y  LI+ + +  D   AL   +EM  +G  P  +
Sbjct: 303 MRRLTEACDLSQEML-DMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAV 361

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM--------------LVEGYC 404
           +Y+ L+      ++ + A ++  +++ +  V  D+    +              L++G+C
Sbjct: 362 TYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFC 421

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             GL+ EA R+ E M E    P  A Y  + +G        +A  L+KE+
Sbjct: 422 MKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 471



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 108/249 (43%), Gaps = 19/249 (7%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R  V  N  TYNIL++G+C   ++ K      EM  +  + P+VV+YN LID +  + 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCL-PNVVTYNTLIDAYCKMG 59

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A      M ++G+ P  ISY  ++         K A ++ +EM        D V +
Sbjct: 60  RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTY 118

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N L+ GYC+ G   +A  I   M  NG  P+V TY +L N +  AR    A+  + +++ 
Sbjct: 119 NTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI 178

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           R                 L+P+E     L D   R     +A  I+  M E G  P+   
Sbjct: 179 R----------------GLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVT 222

Query: 517 YKKIYVEMH 525
           Y   ++  H
Sbjct: 223 YNA-FIHGH 230


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 209/476 (43%), Gaps = 43/476 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P+V ++S ++  L    +     ++ LF ++ K     S         P+  AYN V
Sbjct: 223 GCVPNVFSYSIILKGLC--DNSMSQRALDLFQMMAKEGGACS---------PNVVAYNTV 271

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC-ARASRKHLLVFVLERILEM 122
           ++     G+  K   LF +M   G KPDV+TYN++I  LC ARA  K  LV  L ++   
Sbjct: 272 IHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV--LRQMTTN 329

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G      T+  ++  Y   G L+ A  + + M+   R +   I   +    S    G   
Sbjct: 330 GAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKS--RGLIPNIVICNSFLASLCKHGRSK 387

Query: 183 DDDEVFEKLLPNSINPS--SEPPLL--------------------PKTFAPNSRIYTTLM 220
           +  E+F+ +      P   S   LL                        A + R++  L+
Sbjct: 388 EAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILI 447

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
             Y   G V D + +   M++Q      PD VTY+TV+SA  + G +  A +   +M   
Sbjct: 448 HAYAKRGMVDDAMLIFTEMQQQ---GVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVAR 504

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  N   Y+ +++G+C    + KAKEL+ EM +     PD+V +N +I+          
Sbjct: 505 GIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMD 564

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A   F+ +   G  P  I++T+L+  + L  +   A K+ D M     V+ DIV ++ L+
Sbjct: 565 AHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAM-EVVGVETDIVTYSTLL 623

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           +GY + G + +   +   M+  G  PN  TYG +  G+  A +   A   + E+ E
Sbjct: 624 DGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIE 679



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 197/474 (41%), Gaps = 76/474 (16%)

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVL-----TYNVMIKLCARASRKHLLVFVLERIL 120
           +AC   G P   L LF+++    A P V+     TY++++  C RA R  L + +   IL
Sbjct: 126 SACITDG-PALALALFNRVCREQAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCIL 184

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+ +   T  +L+                       + +C          Y++  E  
Sbjct: 185 RTGLKIHQITASTLL-----------------------KCLC----------YANRTE-- 209

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E    LL    +  SE   +P  F+     Y+ ++KG + +  +S     L  M 
Sbjct: 210 -----EAVNVLL----HRMSELGCVPNVFS-----YSIILKG-LCDNSMSQRALDLFQMM 254

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +E  A  P+ V Y TV+    K G   +A  +  EMTR GV  + +TYN+++   C+  
Sbjct: 255 AKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKAR 314

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +DKA+ +LR+M  +   +PD V+YN +I G+  +     A   F +M++RG+ P  +  
Sbjct: 315 AMDKAELVLRQMTTNGA-QPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVIC 373

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            + + +     + K A ++FD M      K DIV++  L+ GY   G   +   +   MK
Sbjct: 374 NSFLASLCKHGRSKEAAEIFDSMTAKGH-KPDIVSYCTLLHGYASEGWFADMIGLFNSMK 432

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
            NG   +   +  L +  +      +A+L++ E+++      +GV+          PD  
Sbjct: 433 SNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQ------QGVS----------PDVV 476

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRMFTSK 532
               +     R      A+E    M   GI PN   Y  I     MH  +  +K
Sbjct: 477 TYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 172/434 (39%), Gaps = 71/434 (16%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK--------- 55
           G +P++   ++ ++ L   G     E+ ++FD +  +  K   PDIVS            
Sbjct: 365 GLIPNIVICNSFLASLCKHGRSK--EAAEIFDSMTAKGHK---PDIVSYCTLLHGYASEG 419

Query: 56  ------------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
                              D   +N +++A A  G     + +F +M + G  PDV+TY+
Sbjct: 420 WFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYS 479

Query: 98  VMIKLCARASRKHLLVFVLERILEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
            +I   +R  R   L   +E+  +M   GI      + S++  +   G L  A+ +V  M
Sbjct: 480 TVISAFSRMGR---LTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEM 536

Query: 155 -REG--RRDV----------CKIIRELDLED-YSSENEGDDDDDDEVFEKLLPNSINPSS 200
             +G  R D+          CK  R +D  D +    +  +  D   F  L    I+   
Sbjct: 537 INKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSL----IDGYC 592

Query: 201 EPPLLPKTFA-----------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
               + K F             +   Y+TL+ GY   GR++D + +   M+R+      P
Sbjct: 593 LVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRK---GVKP 649

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           + VTY  +++ L +AG    AR+   EM   G       Y I+L G C+    D+A  L 
Sbjct: 650 NTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILF 709

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           +++     ++  +   N +I+    +     A   F  + A G+ P + +Y  ++     
Sbjct: 710 QKLG-TMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLK 768

Query: 370 SSQPKLANKVFDEM 383
               + AN +F  M
Sbjct: 769 DGAVEDANNMFSSM 782



 Score = 38.9 bits (89), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 20/235 (8%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           K  D   V   + D   Y+ +L+     G+    L LF +M   G KP+ +TY +M+   
Sbjct: 602 KILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGL 661

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVC 162
            RA R          ++E G T+ ++ +  ++    G      A E I+   + G  +V 
Sbjct: 662 FRAGRTVAARKKFHEMIESGTTVTVSIYGIILG---GLCRNNCADEAIILFQKLGTMNVK 718

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
             I  L+    +       ++  E+F  +        S   LL     PN   Y  ++  
Sbjct: 719 FSITILNTMINAMYKVQRKEEAKELFATI--------SASGLL-----PNESTYGVMIIN 765

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            + +G V D   M  +M   E +   P       ++  L++ G + +A   L+++
Sbjct: 766 LLKDGAVEDANNMFSSM---EKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKV 817


>gi|326516602|dbj|BAJ92456.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 775

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 153/606 (25%), Positives = 266/606 (43%), Gaps = 75/606 (12%)

Query: 8   PHVKAWSTVVSRLA--ASGD----DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           P V AWS V++ +   A+G     D  +E   LF       RK S+  +++  KP++  +
Sbjct: 189 PPVAAWSAVIAHMCQTATGSFLAADMVMEIGYLFQNNRVDPRKKSNRPLLA-MKPNSFTF 247

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N VL A    G  KK  QL + M   G KP+     VM ++  +   K   +  L+R ++
Sbjct: 248 NIVLTASLLFGTTKKAEQLLELMPRIGVKPEASLLVVMARIYEKNGHKDE-IHKLKRHVD 306

Query: 122 MGITLCMTTFQS----LVAAYVGFGDLEIA-ETIVQAMREGRR-----DVCKIIRE---- 167
               L  + F+     L++ ++ FGDL+ A + ++  +++G       +  K + E    
Sbjct: 307 EACGLSESEFRQYYDCLLSCHLKFGDLDSAVDMVLDMLKKGNNAKRSLEAAKAVLEAVES 366

Query: 168 ----LDLEDYSSENEG------DDDDD---------DEVFE----------KLLPNSINP 198
               L  +    EN G        D           D+ F           KLL + +  
Sbjct: 367 NKIYLPCQKADPENSGFLNKPVSTDHQMLNYASFFKDKSFARLELEARELLKLLSDKLQG 426

Query: 199 S-----SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
                 SE  +L     P    Y  L+K ++   ++S     L     +ED+    +   
Sbjct: 427 QVGLVKSEHGVLH----PTETTYAKLVKTFLEADKISALASFL-VKASKEDSPVSVESSF 481

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
              V++A +  G +++A  +L EM   GV      Y+ LLK YC++   +     L + A
Sbjct: 482 VVQVINACISLGLLEQAHDLLDEMRFSGVRVGSSIYSSLLKAYCKEGNHEDDITALLKDA 541

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
             A I+ D   Y  LI      +++ GAL  F EM++  I  +      ++     +++ 
Sbjct: 542 QQAGIQLDSSCYEDLIKSRAHHNNTTGALHLFKEMKSSNIKKSVNREFEMLVQSCDNNEA 601

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
            L  K+ +E+     V   I  WN ++  +C+  L+ +A + + +M+  G  PN  T+ S
Sbjct: 602 ALTAKLVEEVKSGHTVNHAIHDWNNVIHFFCKKRLMHDAHKALSKMRVLGHTPNAQTFHS 661

Query: 434 LANGI-SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           L     ++  K  E   LW E+K         V A+S+    +K D+ELLD+L    VR 
Sbjct: 662 LVTAYAAVGGKYVEVTDLWGEMK---------VLANSN---SMKFDQELLDSLLYCFVRG 709

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAF 552
            FF +A+E++  ME   +  +K KYK ++++ H  ++  K A + + + +  R+ AA  F
Sbjct: 710 GFFLRAMEVIELMESSKLFIDKYKYKSLWLKYHRTLYKGK-APKVQTEAQLIRREAALRF 768

Query: 553 KFWLGL 558
           K W+GL
Sbjct: 769 KKWIGL 774


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 208/462 (45%), Gaps = 35/462 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   + N++LN     G+      ++ QM   G  PDV   ++M+    +  +       
Sbjct: 189 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 248

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++++  +G+   + T+ SL+  YV  GD+E A+ +++ M E       +   L ++ Y  
Sbjct: 249 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + + D+       EK+L      ++          P+ R Y  L+ GY   G++ D VR+
Sbjct: 309 QCKMDEA------EKVLRGMQEEAA--------LVPDERAYGVLIDGYCRTGKIDDAVRL 354

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M R        +     ++++   K G +  A  V+  M    +  +  +YN LL G
Sbjct: 355 LDEMLRL---GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 411

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++    +A  L  +M  +  IEP V++YN L+ G   +     AL  ++ M   G+AP
Sbjct: 412 YCREGHTSEAFNLCDKMLQEG-IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAP 470

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            ++ Y+TL+         + A+ ++ ++L     K  I  +N ++ G C+MG + EA+ I
Sbjct: 471 DEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEI 529

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            ++MK+ G  P+  TY +L +G   A   G+A       K +  +++E ++         
Sbjct: 530 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAF------KVKGAMEREXIS--------- 574

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            P  E+ ++L     ++    +  +++  M   G+ PN   Y
Sbjct: 575 -PSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTY 615



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/475 (22%), Positives = 185/475 (38%), Gaps = 98/475 (20%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR------ 108
           KPD+ +YN +L+     G   +   L D+M + G +P VLTYN ++K   R         
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 458

Query: 109 -KHLL------------------VFVLER----------ILEMGITLCMTTFQSLVAAYV 139
             HL+                  +F +E           IL  G T    TF ++++   
Sbjct: 459 IWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 518

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS-SENEGDDDDDDEVFEKLLPNSINP 198
             G +  AE I   M++       I     ++ Y  + N G         E+     I+P
Sbjct: 519 KMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER---EXISP 575

Query: 199 SSE--PPLLPKTF--------------------APNSRIYTTLMKGYMNEGRVSDTVRML 236
           S E    L+   F                     PN   Y  L+ G+  EG +    +  
Sbjct: 576 SIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD---KAF 632

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--------------- 281
            +     +N    + +  +T+VS L + G +D A  ++ +M   G               
Sbjct: 633 SSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRY 692

Query: 282 -----------------VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
                            +  N I YNI + G C+  ++D A+     ++    + PD  +
Sbjct: 693 AAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFV-PDNFT 751

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y  LI G+    +   A    +EM  RG+ P  ++Y  L+     S     A ++F + L
Sbjct: 752 YCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHK-L 810

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
               +  ++V +N L++GYC++G ++ A ++ ++M E G  P+V TY +L NG+ 
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLC 865



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 111/491 (22%), Positives = 206/491 (41%), Gaps = 71/491 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G +P V   S +V+   A   DG V+    F      V+K  +  +    +P+   
Sbjct: 217 MIRVGIVPDVFMVSIMVN---AFCKDGKVDEAAGF------VKKMENLGV----EPNIVT 263

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC---------------- 103
           Y++++N   +LG  +    +   M E G   +V+TY ++IK  C                
Sbjct: 264 YHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQ 323

Query: 104 -------------------ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
                               R  +    V +L+ +L +G+   +    SL+  Y   G++
Sbjct: 324 EEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEI 383

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
             AE ++  M +             L+ Y    EG   +   + +K+L   I    EP +
Sbjct: 384 HEAEGVITRMVDWNLKPDSYSYNTLLDGYC--REGHTSEAFNLCDKMLQEGI----EPTV 437

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           L          Y TL+KG    G   D +++   M +       PD V Y+T++  L K 
Sbjct: 438 LT---------YNTLLKGLCRVGAFDDALQIWHLMMKX---GVAPDEVGYSTLLDGLFKM 485

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
            + + A  +  ++   G   +RIT+N ++ G C+  ++ +A+E+  +M  D    PD ++
Sbjct: 486 ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSPDGIT 544

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM- 383
           Y  LIDG+    +   A      M    I+P+   Y +L+     S +      +  EM 
Sbjct: 545 YRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMG 604

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +R   +  +IV +  L++G+C+ G++++A      M ENG   N+    ++ +G+    +
Sbjct: 605 IRG--LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGR 662

Query: 444 PGEALLLWKEI 454
             EA LL +++
Sbjct: 663 IDEANLLMQKM 673



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 170/397 (42%), Gaps = 61/397 (15%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS------------ 107
            +N +++    +GK  +  ++FD+M + G  PD +TY  +I    +AS            
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 568

Query: 108 --------------------RKHLLVFVLERILEMGI---TLCMTTFQSLVAAYVGFGDL 144
                               +   LV   + + EMGI   T  + T+ +L+  +   G L
Sbjct: 569 EREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
           + A +    M E       II    +        G  D+ + + +K++ +   P  E  L
Sbjct: 629 DKAFSSYFEMTENGLSANIIICSTMVSGLY--RLGRIDEANLLMQKMVDHGFFPDHECFL 686

Query: 205 LP------------------KTFA-PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                               KTF  PN+ +Y   + G    G+V D  R    +  +   
Sbjct: 687 KSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK--- 743

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD+ TY T++     AG++D A ++  EM R G+  N +TYN L+ G C+   +D+A
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRA 803

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           + L  ++     + P+VV+YN LIDG+  I +   A    ++M   GI+P+ ++Y+ L+ 
Sbjct: 804 QRLFHKLHQKG-LFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALIN 862

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
                   + + K+ ++M++   V   ++ +  LV+G
Sbjct: 863 GLCKHGDIERSMKLLNQMIK-AGVDSKLIEYCTLVQG 898



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P    + T++   +A+G+    E+ +L D +++R              P+   YNA+
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVD--EAFRLRDEMLRR-----------GLVPNIVTYNAL 790

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N         +  +LF ++H+ G  P+V+TYN +I    +         + ++++E GI
Sbjct: 791 INGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGI 850

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +  + T+ +L+      GD+E +  ++  M
Sbjct: 851 SPSVVTYSALINGLCKHGDIERSMKLLNQM 880


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 188/436 (43%), Gaps = 53/436 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P     +++LN   +  +    + L DQM E G +PD +T+  +I      ++    V 
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R+++ G    + T+  +V      GD ++A  ++  M   + +   +I    ++   
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                DD             ++N   E  +  K   PN   Y++L+    + GR SD  +
Sbjct: 272 KYRHVDD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCSYGRWSDASQ 316

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT+  ++ A VK G    A ++  +M +  +  +  TYN L+ 
Sbjct: 317 LLSDMIEKKIN---PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 373

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++DKAK++   M       PDVV+YN LI GF            F EM  RG+ 
Sbjct: 374 GFCMHDRLDKAKQMFEFMVS-KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 432

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
              ++YTTL++          A KVF +M+ D                            
Sbjct: 433 GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEV 492

Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                   +K+DI  +  ++EG C+ G V++   +   +   G  PNV TY ++ +G+  
Sbjct: 493 FDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 552

Query: 441 ARKPGEALLLWKEIKE 456
            R   EA  L K++KE
Sbjct: 553 KRLLQEAYALLKKMKE 568



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 199/481 (41%), Gaps = 88/481 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A A + K    + L ++M        + TYN++I    R S+  L + +
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  Y     +  A  +V  M E                   
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE------------------- 183

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P++  +TTL+ G     + S+ V +
Sbjct: 184 -------------------------------MGYRPDTITFTTLIHGLFLHNKASEAVAL 212

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M ++      P+ VTY  VV+ L K G  D A  +L +M    + A+ + +N ++  
Sbjct: 213 VDRMVQR---GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDS 269

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   +D A  L +EM +   I P+VV+Y+ LI         + A    ++M  + I P
Sbjct: 270 LCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 328

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             +++  L+ AF    +   A K++D+M++   DP    DI  +N LV G+C    +++A
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP----DIFTYNSLVNGFCMHDRLDKA 384

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EG 464
           K++ E M     +P+V TY +L  G   +++  +   L++E+  R  V          +G
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 444

Query: 465 VNADSD---------------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           +  D D               +PP +     LLD L +         KALE+   M++  
Sbjct: 445 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN----NGKLEKALEVFDYMQKSE 500

Query: 510 I 510
           I
Sbjct: 501 I 501



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 180/439 (41%), Gaps = 78/439 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P++  +  VV+ L   GD          D+ +  + K     I    + D   
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDT---------DLALNLLNKMEAAKI----EADVVI 262

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++++          L LF +M   G +P+V+TY+ +I       R      +L  ++
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G    AE +   M   +R +     + D+  Y+S   G 
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI--KRSI-----DPDIFTYNSLVNGF 375

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D   ++FE              ++ K   P+   Y TL+KG+    RV D   +
Sbjct: 376 CMHDRLDKAKQMFE-------------FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         D VTYTT++  L   G  D A++V  +M   GVP + +TY+ILL G
Sbjct: 423 F---REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +++KA E+   M   ++I+ D+  Y  +I+G             F  +  +G+ P
Sbjct: 480 LCNNGKLEKALEVFDYM-QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 538

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y T                                    ++ G C   L++EA  +
Sbjct: 539 NVVTYNT------------------------------------MISGLCSKRLLQEAYAL 562

Query: 416 IERMKENGFYPNVATYGSL 434
           +++MKE+G  PN  TY +L
Sbjct: 563 LKKMKEDGPLPNSGTYNTL 581


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 194/416 (46%), Gaps = 36/416 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +N +L+      +  + L LF QM E   +P+V+T+  ++    R  R    V +
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E    +  ++    + D S 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID-SL 265

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   D   +F ++         E  + P  F  NS I      G+ + GR SD  ++
Sbjct: 266 CKDGRHSDAQNLFTEM--------QEKGIFPDLFTYNSMIV-----GFCSSGRWSDAEQL 312

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ +   PD VTY  +++A VK G    A ++  EM   G+  N ITY+ ++ G
Sbjct: 313 LQEMLERKIS---PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +C+Q ++D A+ +   MA      P+++++N LIDG+     IDD    +   +EM   G
Sbjct: 370 FCKQNRLDAAEHMFYLMATKG-CSPNLITFNTLIDGYCGAKRIDD---GMELLHEMTETG 425

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +     +Y TL+  F L      A  +  EM+       DIV  + L++G C  G +++A
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP-DIVTCDTLLDGLCDNGKLKDA 484

Query: 413 KRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + + M++           NG  P+V TY  L +G+    K  EA  L++E+  R
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 201/466 (43%), Gaps = 45/466 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    + T+V  +   GD   V ++ L       +RK  +   VS   P+   
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGD--TVSALNL-------LRKMEE---VSHIIPNVVI 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A++++    G+      LF +M E G  PD+ TYN MI     + R      +L+ +L
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I+  + T+ +L+ A+V  G    AE +   M   R  +   I       YSS  +G 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTIT------YSSMIDG- 369

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLL--PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                  F K   N ++ +     L   K  +PN   + TL+ GY    R+ D + +L  
Sbjct: 370 -------FCK--QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    +     D  TY T++      G ++ A  +L EM   G+  + +T + LL G C 
Sbjct: 421 MT---ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 299 QLQIDKAKELLREMADDAK----------IEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             ++  A E+ + M    K          +EPDV +YNILI G I       A   + EM
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RGI P  I+Y++++      S+   A ++FD M        ++V +  L+ GYC+ G 
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGR 596

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           V++   +   M   G   N  TY +L  G         AL +++E+
Sbjct: 597 VDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 210/512 (41%), Gaps = 98/512 (19%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQ 79
           V+  KL  VVV+  R    PD+V            + D  ++  ++    +  K    L 
Sbjct: 80  VDFCKLMGVVVRMER----PDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 135

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
            F ++ + G  PDV+T+N ++       R    + +  ++ E      + TF +L+    
Sbjct: 136 TFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
                          REGR     I+  + L D   E+                      
Sbjct: 196 ---------------REGR-----IVEAVALLDRMMED---------------------- 213

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH--PDHVTYTTV 257
                      P    Y T++ G   +G   DTV  L  +R+ E+  SH  P+ V Y+ +
Sbjct: 214 --------GLQPTQITYGTIVDGMCKKG---DTVSALNLLRKMEE-VSHIIPNVVIYSAI 261

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           + +L K G    A+ +  EM   G+  +  TYN ++ G+C   +   A++LL+EM  + K
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERK 320

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I PDVV+YN LI+ F+       A   ++EM  RGI P  I+Y++++  F   ++   A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +F  ++       +++ +N L++GYC    +++   ++  M E G   +  TY +L +G
Sbjct: 381 HMF-YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
             L      AL L +E+              S L P +   + LLD L D        + 
Sbjct: 440 FYLVGDLNAALDLLQEM------------ISSGLCPDIVTCDTLLDGLCD----NGKLKD 483

Query: 498 ALEIVACMEE-----------HGIPPNKTKYK 518
           ALE+   M++           +G+ P+   Y 
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 184/431 (42%), Gaps = 45/431 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P +  +++++    +SG     E  +L   +++R  K S         PD   
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAE--QLLQEMLER--KIS---------PDVVT 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++NA    GK  +  +L+D+M   G  P+ +TY+ MI    + +R      +   + 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF +L+  Y G   ++    ++  M E            D   Y++   G 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVA-------DTTTYNTLIHG- 439

Query: 181 DDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                      L   +N + +    ++     P+     TL+ G  + G++ D + M   
Sbjct: 440 ---------FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 239 MRRQEDN--ASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           M++ + +  ASHP      D  TY  ++S L+  G    A ++  EM   G+  + ITY+
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++ G C+Q ++D+A ++   M   +   P+VV++  LI+G+         L  F EM  
Sbjct: 551 SMIDGLCKQSRLDEATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI    I+Y TL+  F        A  +F EM+        I   NML   + +    E
Sbjct: 610 RGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK----E 665

Query: 411 EAKRIIERMKE 421
           E KR +  +++
Sbjct: 666 ELKRAVAMLEK 676



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 125/281 (44%), Gaps = 17/281 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++ E      D  ++T ++        +  A     ++T++G+  + +T+N LL G C +
Sbjct: 103 QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVE 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A  L  +M +     P+VV++  L++G         A+   + M   G+ PT+I+
Sbjct: 163 DRVSEALNLFHQMFE-TTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T++           A  +  +M     +  ++V ++ +++  C+ G   +A+ +   M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +E G +P++ TY S+  G   + +  +A  L +E+ ER                 + PD 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLER----------------KISPDV 325

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +AL +  V+   F +A E+   M   GI PN   Y  +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L  G+ +   ++ A +L  +M     + P VV +  L+   + ++     ++ + +M  +
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            I     S+T L+K F   S+   A   F ++ +   +  D+V +N L+ G C    V E
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITK-LGLHPDVVTFNTLLHGLCVEDRVSE 167

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           A  +  +M E    PNV T+ +L NG+    +  EA+ L   + E
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME 212


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 214/507 (42%), Gaps = 73/507 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V +++ ++  L   G  G  + +         +R  ++   V    PD  AYN V
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDL---------LRMMAEGGTVC--SPDVVAYNTV 227

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G   K   LF +M + G  PD++TY+ ++    +A         L +++  G+
Sbjct: 228 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 287

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+ +L+  Y   G  + A  + + MR  R+ +   +  L+    S    G   + 
Sbjct: 288 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR--RQSILPDVVALNTLMGSLCKYGKIKEA 345

Query: 185 DEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYTTLMKG 222
            +VF+ +     NP            +++  L+  T           AP+   +  L+K 
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 405

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           Y N G +   + +   MR   D+   P  VTY TV++AL + G MD A +   +M   GV
Sbjct: 406 YANCGMLDKAMIIFNEMR---DHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGV 462

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------------------- 316
             ++  Y+ L++G+C    + KAKEL+ E+ ++                           
Sbjct: 463 VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522

Query: 317 --------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
                    + PD V YN+L+DG+ L+     AL  F+ M + GI P  + Y TL+  + 
Sbjct: 523 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC 582

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              +      +F EML+   +K   + +N++++G    G    AK     M E+G   N 
Sbjct: 583 KIGRIDEGLSLFREMLQKG-IKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNK 641

Query: 429 ATYGSLANGISLARKPGEALLLWKEIK 455
            TY  +  G+   R   EA+ L+KE++
Sbjct: 642 CTYSIVLRGLFKNRCFDEAIFLFKELR 668



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/551 (23%), Positives = 223/551 (40%), Gaps = 106/551 (19%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 82  SAACGSGPALAVALFNRAASRAQ---GPRVLS---PTSYTYAILMDCCTRAHRPELALAF 135

Query: 81  FDQM---------------------------------H---EFGAKPDVLTYNVMIK-LC 103
           F Q+                                 H   E G  PDV +YN+++K LC
Sbjct: 136 FGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLC 195

Query: 104 ARASRKHLLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            +          L R++  G T+C   +  + +++  +   GD+  A             
Sbjct: 196 NQGKSGQ--ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKA------------- 240

Query: 161 VCKIIREL-------DLEDYSSE----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
            C + +E+       DL  YSS      +    D  E F + + N            K  
Sbjct: 241 -CDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN------------KGV 287

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P++  Y  L+ GY + G+  + VR+   MRRQ   +  PD V   T++ +L K G +  
Sbjct: 288 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQ---SILPDVVALNTLMGSLCKYGKIKE 344

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR V   M   G   +  +Y I+L GY  +  +    +L   M  D  I PD+ ++N+LI
Sbjct: 345 ARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDIYTFNVLI 403

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
             +        A+  FNEMR  G+ P  ++Y T++ A     +   A + F++M+ D  V
Sbjct: 404 KAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI-DQGV 462

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D  A++ L++G+C  G + +AK +I  +  NG   ++  +GS+ N +    +  +A  
Sbjct: 463 VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           ++                D  +   L PD  + + L D         KAL +   M   G
Sbjct: 523 IF----------------DLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 510 IPPNKTKYKKI 520
           I PN   Y  +
Sbjct: 567 IEPNVVGYGTL 577



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 195/468 (41%), Gaps = 72/468 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP    ++ ++   +++G     E+V++F    K +R+ S         PD  A
Sbjct: 282 MVNKGVLPDNWTYNNLIYGYSSTGQ--WKEAVRVF----KEMRRQS-------ILPDVVA 328

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++ +    GK K+   +FD M   G  PDV +Y +M+   A       +  + + +L
Sbjct: 329 LNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLML 388

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCKIIREL 168
             GI   + TF  L+ AY   G L+ A  I   MR+ G +            +C+I    
Sbjct: 389 GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRI---- 444

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP-PLLPKTFAPNSRIYTT--LMKGYMN 225
                     G  DD  E F +++   + P       L + F  +  +     L+   MN
Sbjct: 445 ----------GKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 494

Query: 226 EGRVSDTVRM------LGAMRRQEDNAS----------HPDHVTYTTVVSALVKAGSMDR 269
            G   D V        L  + R  D  +          HPD V Y  ++      G M++
Sbjct: 495 NGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEK 554

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V   M   G+  N + Y  L+ GYC+  +ID+   L REM     I+P  + YNI+I
Sbjct: 555 ALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKG-IKPSTILYNIII 613

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------ 383
           DG      +  A   F+EM   GIA  K +Y+ +++           N+ FDE       
Sbjct: 614 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL-------FKNRCFDEAIFLFKE 666

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           LR   VK+DI+  N ++ G  +   VEEAK +   +  +G  P   TY
Sbjct: 667 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTY 714



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 165/404 (40%), Gaps = 39/404 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V +++ +++  A  G    V+   LFD+++                PD   
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKG--CLVDMTDLFDLMLG-----------DGIAPDIYT 398

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A AN G   K + +F++M + G KP V+TY  +I    R  +    +    +++
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----------DVCKIIREL 168
           + G+      +  L+  +   G L  A E I + M  G R           ++CK+ R +
Sbjct: 459 DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVM 518

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLM 220
           D ++            D V   +L +      +          ++     PN   Y TL+
Sbjct: 519 DAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 578

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY   GR+ + + +    R        P  + Y  ++  L +AG    A+    EMT  
Sbjct: 579 NGYCKIGRIDEGLSLF---REMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 635

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSA 339
           G+  N+ TY+I+L+G  +    D+A  L +E+ A + KI  D+++ N +I G        
Sbjct: 636 GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI--DIITLNTMIAGMFQTRRVE 693

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            A   F  +   G+ P  ++Y+ ++         + A  +F  M
Sbjct: 694 EAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSM 737


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 215/471 (45%), Gaps = 46/471 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PD    N ++N   ++G+      +  ++ + G  P  +T N +IK LC +   K  L 
Sbjct: 339 QPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALH 398

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  +++L  G  L   ++ +L+      GD               R   K++R++D    
Sbjct: 399 F-HDKLLAQGFQLNQVSYATLINGVCKIGD--------------TRGAIKLLRKIDGRLT 443

Query: 174 SSENEGDDDDDDEVFE-KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               E      D + + +L+  +    SE  +  K  + +   Y+TL+ G+   G++ + 
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSE--MTVKGISADVVTYSTLIYGFCIVGKLKEA 501

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +L  M  +  N   PD  TYT +V AL K G +  A+ VLA M +  V  +  TYN L
Sbjct: 502 IGLLNEMVLKTIN---PDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTL 558

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMR 349
           + GY    ++ KA+ +   M+    + PDV +Y ILI+GF    ++D+   AL  F EM 
Sbjct: 559 MNGYLLVYEVKKAQHVFNAMS-LMGVTPDVHTYTILINGFCKSKMVDE---ALNLFKEMH 614

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            + + P  ++Y++L+     S +      + DEM RD     D++ +N L++G C+ G +
Sbjct: 615 QKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEM-RDRGQPADVITYNSLIDGLCKNGHL 673

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           ++A  +  +MK+ G  PN  T+  L +G+    +  +A  +++++               
Sbjct: 674 DKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDL--------------- 718

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            L      D  + + +     +     +AL +++ MEE+G  PN   +  I
Sbjct: 719 -LTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDII 768



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 193/443 (43%), Gaps = 43/443 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P     +T++  L   G              VK+   F D  +    + +  +
Sbjct: 368 ILKRGYPPSTVTLNTLIKGLCLKGQ-------------VKKALHFHDKLLAQGFQLNQVS 414

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G  +  ++L  ++     KP+V  Y+ +I    +         +   + 
Sbjct: 415 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMT 474

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
             GI+  + T+ +L+  +   G L+ A  ++  M      V K I   D+  Y+      
Sbjct: 475 VKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEM------VLKTINP-DVRTYTILVDAL 527

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   V   +L   +              P+   Y TLM GY+    V     +
Sbjct: 528 GKEGKVKEAKSVLAVMLKACVK-------------PDVFTYNTLMNGYLLVYEVKKAQHV 574

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
             AM         PD  TYT +++   K+  +D A  +  EM +  +  + +TY+ L+ G
Sbjct: 575 FNAMSLM---GVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDG 631

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +I    +L+ EM D  +   DV++YN LIDG         A+  FN+M+ +GI P
Sbjct: 632 LCKSGRISYVWDLIDEMRDRGQ-PADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRP 690

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              ++T L+       + K A +VF ++L      +D+  +N+++ G+C+ GL+EEA  +
Sbjct: 691 NTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY-HLDVYIYNVMIYGHCKQGLLEEALTM 749

Query: 416 IERMKENGFYPNVATYGSLANGI 438
           + +M+ENG  PN  T+  + N +
Sbjct: 750 LSKMEENGCIPNAVTFDIIINAL 772



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 22/310 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL + F  N   Y TL+ G     R+ DT   +  +R+ +   + P+   Y T++ AL K
Sbjct: 89  LLAQGFQLNQVSYATLINGVC---RIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCK 145

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +  A  + +EMT  G+ AN +TY+ L+ G+C   ++ +A  LL  M     I P+V 
Sbjct: 146 YQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKT-INPNVC 204

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YNIL+D          A +    M    +    I+Y+TLM  + L  + K A  VF+ M
Sbjct: 205 TYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAM 264

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                V  D+ ++N+++ G+C++  V++A  + + M  + F P +  +  + +  +  + 
Sbjct: 265 -SLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRF-PPIIQFNKILDSFAKMKH 322

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
              A+     +  R E+K             ++PD   L+ L +             ++A
Sbjct: 323 YSTAV----SLSHRLELK------------GIQPDLFTLNILINCFCHMGQITFGFSVLA 366

Query: 504 CMEEHGIPPN 513
            + + G PP+
Sbjct: 367 KILKRGYPPS 376



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 112/572 (19%), Positives = 208/572 (36%), Gaps = 90/572 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P     +T++  L   G              VK    F D  +    + +  +
Sbjct: 54  ILKRGYPPDTVTLNTLIKGLCLKGQ-------------VKEALHFHDKLLAQGFQLNQVS 100

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G  +  ++   ++    AKP+V  YN +I    +         +   + 
Sbjct: 101 YATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMT 160

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENE 178
             GI+  + T+ +L+  +   G L+ A  ++  M  +    +VC     +D    +   E
Sbjct: 161 VKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVD----ALCKE 216

Query: 179 GDDDDDDEVFEKLLPNSI--NPSSEPPLLPKTF--------------------APNSRIY 216
           G   +   V   +L   +  N  +   L+   F                     P+   Y
Sbjct: 217 GKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSY 276

Query: 217 TTLMKGYMNEGRVSDTVRMLGAM-------------------------------RRQEDN 245
             ++ G+    RV   + +   M                                R E  
Sbjct: 277 NIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELK 336

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD  T   +++     G +     VLA++ + G P + +T N L+KG C + Q+ KA
Sbjct: 337 GIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKA 396

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
                ++      + + VSY  LI+G   I D+ GA+    ++  R   P    Y+T++ 
Sbjct: 397 LHFHDKLLAQG-FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIID 455

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           A         A  +F EM     +  D+V ++ L+ G+C +G ++EA  ++  M      
Sbjct: 456 ALCKYQLVSEAYGLFSEMTVKG-ISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTIN 514

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           P+V TY  L + +    K  EA  +   + + C                +KPD    + L
Sbjct: 515 PDVRTYTILVDALGKEGKVKEAKSVLAVMLKAC----------------VKPDVFTYNTL 558

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            +  +     +KA  +   M   G+ P+   Y
Sbjct: 559 MNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTY 590



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 151/321 (47%), Gaps = 24/321 (7%)

Query: 194 NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
           ++++ S    +L + + P++    TL+KG   +G+V + +     +  Q       + V+
Sbjct: 44  DAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQ---GFQLNQVS 100

Query: 254 YTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           Y T+++ + + G    A + L ++  R+  P N   YN ++   C+   + +A  L  EM
Sbjct: 101 YATLINGVCRIGDTRAAIKFLRKIDGRLAKP-NVEMYNTIIDALCKYQLVSEAYGLFSEM 159

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                I  +VV+Y+ LI GF ++     AL   N M  + I P   +Y  L+ A     +
Sbjct: 160 TVKG-ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGK 218

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            K A  V   ML+   VK +++ ++ L++GY  +  V++A+ +   M   G  P+V +Y 
Sbjct: 219 VKEAKSVLAVMLK-ACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYN 277

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            + NG    ++  +AL L+KE+              S  PP ++ + ++LD+ A    + 
Sbjct: 278 IMINGFCKIKRVDKALNLFKEM------------ILSRFPPIIQFN-KILDSFA----KM 320

Query: 493 AFFRKALEIVACMEEHGIPPN 513
             +  A+ +   +E  GI P+
Sbjct: 321 KHYSTAVSLSHRLELKGIQPD 341



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 40/297 (13%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V+ ++ +V  L   G +G V+  K    V+ +          +  KPD   YN ++N 
Sbjct: 515 PDVRTYTILVDAL---GKEGKVKEAKSVLAVMLK----------ACVKPDVFTYNTLMNG 561

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
              + + KK   +F+ M   G  PDV TY ++I    ++      + + + + +  +   
Sbjct: 562 YLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPD 621

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             T+ SLV      G +     ++  MR+ R     +I    L D   +N G  D    +
Sbjct: 622 TVTYSSLVDGLCKSGRISYVWDLIDEMRD-RGQPADVITYNSLIDGLCKN-GHLDKAIAL 679

Query: 188 FEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTTLMKGYMN 225
           F K+    I P++                         LL K +  +  IY  ++ G+  
Sbjct: 680 FNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCK 739

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           +G + + + ML  M   E+N   P+ VT+  +++AL K    D+A ++L +M   G+
Sbjct: 740 QGLLEEALTMLSKM---EENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           D A +L+   ++  RG  P  ++  TL+K   L  Q K A    D++L     +++ V++
Sbjct: 43  DDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQG-FQLNQVSY 101

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             L+ G CR+G    A + + ++      PNV  Y ++ + +   +   EA  L+ E+
Sbjct: 102 ATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEM 159



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 16/129 (12%)

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V  N L++G C  G V+EA    +++   GF  N  +Y +L NG+        A+   
Sbjct: 62  DTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFL 121

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           ++I  R                  KP+ E+ + + D   +     +A  + + M   GI 
Sbjct: 122 RKIDGRLA----------------KPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGIS 165

Query: 512 PNKTKYKKI 520
            N   Y  +
Sbjct: 166 ANVVTYSTL 174


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 194/416 (46%), Gaps = 36/416 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +N +L+      +  + L LF QM E   +P+V+T+  ++    R  R    V +
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E    +  ++    + D S 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID-SL 265

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   D   +F ++         E  + P  F  NS I      G+ + GR SD  ++
Sbjct: 266 CKDGRHSDAQNLFTEM--------QEKGIFPDLFTYNSMIV-----GFCSSGRWSDAEQL 312

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ +   PD VTY  +++A VK G    A ++  EM   G+  N ITY+ ++ G
Sbjct: 313 LQEMLERKIS---PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +C+Q ++D A+ +   MA      P+++++N LIDG+     IDD    +   +EM   G
Sbjct: 370 FCKQNRLDAAEHMFYLMATKG-CSPNLITFNTLIDGYCGAKRIDD---GMELLHEMTETG 425

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +     +Y TL+  F L      A  +  EM+       DIV  + L++G C  G +++A
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP-DIVTCDTLLDGLCDNGKLKDA 484

Query: 413 KRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + + M++           NG  P+V TY  L +G+    K  EA  L++E+  R
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 201/466 (43%), Gaps = 45/466 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    + T+V  +   GD   V ++ L       +RK  +   VS   P+   
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGD--TVSALNL-------LRKMEE---VSHIIPNVVI 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A++++    G+      LF +M E G  PD+ TYN MI     + R      +L+ +L
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I+  + T+ +L+ A+V  G    AE +   M   R  +   I       YSS  +G 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTIT------YSSMIDG- 369

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLL--PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                  F K   N ++ +     L   K  +PN   + TL+ GY    R+ D + +L  
Sbjct: 370 -------FCK--QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    +     D  TY T++      G ++ A  +L EM   G+  + +T + LL G C 
Sbjct: 421 MT---ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 299 QLQIDKAKELLREMADDAK----------IEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             ++  A E+ + M    K          +EPDV +YNILI G I       A   + EM
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RGI P  I+Y++++      S+   A ++FD M        ++V +  L+ GYC+ G 
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGR 596

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           V++   +   M   G   N  TY +L  G         AL +++E+
Sbjct: 597 VDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 210/512 (41%), Gaps = 98/512 (19%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQ 79
           V+  KL  VVV+  R    PD+V            + D  ++  ++    +  K    L 
Sbjct: 80  VDFCKLMGVVVRMER----PDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 135

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
            F ++ + G  PDV+T+N ++       R    + +  ++ E      + TF +L+    
Sbjct: 136 TFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
                          REGR     I+  + L D   E+                      
Sbjct: 196 ---------------REGR-----IVEAVALLDRMMED---------------------- 213

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH--PDHVTYTTV 257
                      P    Y T++ G   +G   DTV  L  +R+ E+  SH  P+ V Y+ +
Sbjct: 214 --------GLQPTQITYGTIVDGMCKKG---DTVSALNLLRKMEE-VSHIIPNVVIYSAI 261

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           + +L K G    A+ +  EM   G+  +  TYN ++ G+C   +   A++LL+EM  + K
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERK 320

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I PDVV+YN LI+ F+       A   ++EM  RGI P  I+Y++++  F   ++   A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +F  ++       +++ +N L++GYC    +++   ++  M E G   +  TY +L +G
Sbjct: 381 HMF-YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
             L      AL L +E+              S L P +   + LLD L D        + 
Sbjct: 440 FYLVGDLNAALDLLQEM------------ISSGLCPDIVTCDTLLDGLCD----NGKLKD 483

Query: 498 ALEIVACMEE-----------HGIPPNKTKYK 518
           ALE+   M++           +G+ P+   Y 
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 184/431 (42%), Gaps = 45/431 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P +  +++++    +SG     E  +L   +++R  K S         PD   
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAE--QLLQEMLER--KIS---------PDVVT 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++NA    GK  +  +L+D+M   G  P+ +TY+ MI    + +R      +   + 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF +L+  Y G   ++    ++  M E            D   Y++   G 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVA-------DTTTYNTLIHG- 439

Query: 181 DDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                      L   +N + +    ++     P+     TL+ G  + G++ D + M   
Sbjct: 440 ---------FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 239 MRRQEDN--ASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           M++ + +  ASHP      D  TY  ++S L+  G    A ++  EM   G+  + ITY+
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++ G C+Q ++D+A ++   M   +   P+VV++  LI+G+         L  F EM  
Sbjct: 551 SMIDGLCKQSRLDEATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI    I+Y TL+  F        A  +F EM+        I   NML   + +    E
Sbjct: 610 RGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK----E 665

Query: 411 EAKRIIERMKE 421
           E KR +  +++
Sbjct: 666 ELKRAVAMLEK 676



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 125/281 (44%), Gaps = 17/281 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++ E      D  ++T ++        +  A     ++T++G+  + +T+N LL G C +
Sbjct: 103 QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVE 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A  L  +M +     P+VV++  L++G         A+   + M   G+ PT+I+
Sbjct: 163 DRVSEALNLFHQMFE-TTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T++           A  +  +M     +  ++V ++ +++  C+ G   +A+ +   M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +E G +P++ TY S+  G   + +  +A  L +E+ ER                 + PD 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLER----------------KISPDV 325

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +AL +  V+   F +A E+   M   GI PN   Y  +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L  G+ +   ++ A +L  +M     + P VV +  L+   + ++     ++ + +M  +
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            I     S+T L+K F   S+   A   F ++ +   +  D+V +N L+ G C    V E
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTK-LGLHPDVVTFNTLLHGLCVEDRVSE 167

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           A  +  +M E    PNV T+ +L NG+    +  EA+ L   + E
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME 212


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 199/468 (42%), Gaps = 72/468 (15%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP-DVLTYNVMIKLCARASRKH 110
           + ++PDT A+N  + AC   G   + + +  +M   GA P +  +YNV+I    RA R  
Sbjct: 154 AGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGG 213

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             V V + + E  +     T+ +++  ++  GDLE   ++   M      VC  ++    
Sbjct: 214 DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQM------VCHGLK---- 263

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                                   PN+  Y  L+ G    GR+ 
Sbjct: 264 ----------------------------------------PNAITYNVLLSGLCRAGRMG 283

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +T  +L  M  Q+     PD  TY+ +   L + G       +  +  + GV     T +
Sbjct: 284 ETSALLDEMASQK---MVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCS 340

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           ILL G C+  ++  A+E+L+ + + A + P  V YN LI+G+    +  GA + F +M++
Sbjct: 341 ILLNGLCKDGKVSIAEEVLQSLVN-AGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 399

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           R I P  I+Y  L+     + +   A  +  EM +D  V   +  +N L++ Y R G +E
Sbjct: 400 RHIKPDHITYNALINGLCKAERITNAQDLLMEM-QDNGVNPTVETFNTLIDAYGRTGQLE 458

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +   ++  M+ENG  PNV +YGS+ N      K  EA+ +  ++  +             
Sbjct: 459 KCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK------------- 505

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
               + P+ ++ +A+ D  V      +A  +V  M+ +GI P+   Y 
Sbjct: 506 ---DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 550



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 141/310 (45%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y  ++ G    GR  D V +   M  +   A  P+H+TY T++   +K G ++  
Sbjct: 194 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTER---AVLPNHITYNTMIDGHIKGGDLEAG 250

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +  +M   G+  N ITYN+LL G C+  ++ +   LL EMA   K+ PD  +Y+IL D
Sbjct: 251 FSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQ-KMVPDGFTYSILFD 309

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     DS   L+ F +    G+     + + L+       +  +A +V   ++    V 
Sbjct: 310 GLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 369

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             ++ +N L+ GYC+ G +E A     +MK     P+  TY +L NG+  A +   A  L
Sbjct: 370 TRVI-YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 428

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             E+++       GVN          P  E  + L D   R     K   +++ M+E+G+
Sbjct: 429 LMEMQD------NGVN----------PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 472

Query: 511 PPNKTKYKKI 520
            PN   Y  I
Sbjct: 473 KPNVVSYGSI 482



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 186/412 (45%), Gaps = 20/412 (4%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   YN +L+     G+  +   L D+M      PD  TY+++    +R      ++ 
Sbjct: 263 KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLS 322

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +  + L+ G+T+   T   L+      G + IAE ++Q++        ++I    +  Y 
Sbjct: 323 LFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYC 382

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              E          E         S+   +  +   P+   Y  L+ G     R+++   
Sbjct: 383 QTGE---------LEGAF------STFGQMKSRHIKPDHITYNALINGLCKAERITNAQD 427

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M   +DN  +P   T+ T++ A  + G +++   VL+EM   G+  N ++Y  ++ 
Sbjct: 428 LLMEM---QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVN 484

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C+  +I +A  +L +M     + P+   YN +ID ++    +  A     +M++ GI+
Sbjct: 485 AFCKNGKIPEAVAILDDMFHK-DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGIS 543

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P+ ++Y  L+K     SQ   A ++ +  L + R+  D V++N L+   C  G +++A  
Sbjct: 544 PSIVTYNLLIKGLCNQSQISEAEEIINS-LSNHRLIPDAVSYNTLISACCYRGNIDKALD 602

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           + +RM + G    V TY  L +G+  A +  E   L++++ +   V    ++
Sbjct: 603 LQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIH 654



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 145/352 (41%), Gaps = 55/352 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN ++N     G+ +     F QM     KPD +TYN +I    +A R      +
Sbjct: 369 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 428

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + + G+   + TF +L+ AY   G LE    ++  M+E                   
Sbjct: 429 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE------------------- 469

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              PN   Y +++  +   G++ + V +
Sbjct: 470 -------------------------------NGLKPNVVSYGSIVNAFCKNGKIPEAVAI 498

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++     P+   Y  ++ A V+ G  D+A  ++ +M   G+  + +TYN+L+KG
Sbjct: 499 LDDMFHKD---VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 555

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C Q QI +A+E++  +++  ++ PD VSYN LI       +   AL     M   GI  
Sbjct: 556 LCNQSQISEAEEIINSLSNH-RLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS 614

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           T  +Y  L+     + +      ++ +M+++  V  + +  N++VE Y + G
Sbjct: 615 TVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAI-HNIMVEAYSKYG 665



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 1/169 (0%)

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R+    +   G   +   +N  ++       + +A  +LR M  D    P+  SYN++I 
Sbjct: 145 RRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIA 204

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A+  F+EM  R + P  I+Y T++         +    + D+M+    +K
Sbjct: 205 GMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHG-LK 263

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            + + +N+L+ G CR G + E   +++ M      P+  TY  L +G+S
Sbjct: 264 PNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 312



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YN +++AC   G   K L L  +MH++G K  V TY+ +I     A R   + ++
Sbjct: 579 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYL 638

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            +++++  +         +V AY  +G+   AE + + M + R +
Sbjct: 639 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 683


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 134/513 (26%), Positives = 226/513 (44%), Gaps = 80/513 (15%)

Query: 13  WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG 72
           +S  VS L AS  D    +V +FD +       +D        P +AA+ A++ A ++ G
Sbjct: 111 YSRAVSVLLASEPD----AVAMFDAL-------ADARAAGLPAP-SAAFRALVLAHSSAG 158

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG-ITLCMTTF 131
           + ++ ++ F +M +F  +P    YN                 V + +++ G I L +  +
Sbjct: 159 RHQEAVEAFSRMGDFDCRPTAFVYNA----------------VFQVLVDRGVILLALALY 202

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
             +V++    G L  + T +  M +G   +CK               G   D  ++F+++
Sbjct: 203 NRMVSS----GCLPNSTTYIVLM-DG---LCK--------------RGMAVDALKMFDEM 240

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
           L   I              P+ +IYT L+    NEGR+ D  R+L +M+   +N   PD 
Sbjct: 241 LERGI-------------VPDVKIYTVLLSSLCNEGRIEDAGRLLCSMK---ENGCPPDE 284

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VTYT  +S L KAG +D A      +   G     I Y+ L+ G  Q  + D+      E
Sbjct: 285 VTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTE 344

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M   + I PD+  Y ILI  F     +  A    +EM+ +G  P    Y TL+KA     
Sbjct: 345 MLGKS-ISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVG 403

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
               A  +  EML++  V +D    N+++ G C+ GL+++A ++ + M E+G +P V TY
Sbjct: 404 NIDRAQSLMSEMLQN-NVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTY 462

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP----DEELLDALAD 487
            +L +G+  A    EA +L+ ++       + G N    L   L      D E L  L D
Sbjct: 463 NALIDGLYRAGMLEEARMLFHKM-------EMGNNPSLFLRLTLGANQVRDTESLRKLVD 515

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              ++    KA +++  + E G+ P+   Y  +
Sbjct: 516 GMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTL 548



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 201/456 (44%), Gaps = 92/456 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ SG LP+   +  ++  L   G    V+++K+FD +++R        IV    PD   
Sbjct: 205 MVSSGCLPNSTTYIVLMDGLCKRG--MAVDALKMFDEMLER-------GIV----PDVKI 251

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L++  N G+ +   +L   M E G  PD +TY V +    +A R        E + 
Sbjct: 252 YTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQ 311

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G TL +  +  L+            + + QA   GR D          E  S   E  
Sbjct: 312 DGGFTLGLIGYSCLI------------DGLFQA---GRFD----------EGLSYYTE-- 344

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                  +L K+ +P+  +YT L++ +   GR  D   +L  M+
Sbjct: 345 -----------------------MLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMK 381

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              D    PD   Y T++ AL   G++DRA+ +++EM +  V  +  T+NI++ G C++ 
Sbjct: 382 ---DKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKG 438

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            IDKA ++  EM +     P V++YN LIDG         A   F++M   G  P+    
Sbjct: 439 LIDKAMQVFDEMGEHG-CHPTVMTYNALIDGLYRAGMLEEARMLFHKMEM-GNNPSLFLR 496

Query: 361 TTLMKAFALSSQPKLANKVFD-EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
            TL            AN+V D E LR             LV+G C+ G V +A +++  +
Sbjct: 497 LTLG-----------ANQVRDTESLRK------------LVDGMCQSGQVLKAYKLLRGI 533

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            E+G  P+V TY +L NG+  A+    AL L+KE++
Sbjct: 534 IESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQ 569



 Score = 38.5 bits (88), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           I S   PD   YN ++N           L+LF ++   G  PD +TY  +I    RA R+
Sbjct: 534 IESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRE 593

Query: 110 HLLVFVLERILEMG 123
           +    + + IL  G
Sbjct: 594 NDATMLFQNILRSG 607


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 188/436 (43%), Gaps = 53/436 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P     +++LN   +  +    + L DQM E G +PD +T+  +I      ++    V 
Sbjct: 114 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 173

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R+++ G    + T+  +V      GD ++A  ++  M   + +   +I    ++   
Sbjct: 174 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 233

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                DD             ++N   E  +  K   PN   Y++L+    + GR SD  +
Sbjct: 234 KYRHVDD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCSYGRWSDASQ 278

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT+  ++ A VK G    A ++  +M +  +  +  TYN L+ 
Sbjct: 279 LLSDMIEKKIN---PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 335

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++DKAK++   M       PDVV+YN LI GF            F EM  RG+ 
Sbjct: 336 GFCMHDRLDKAKQMFEFMVS-KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 394

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
              ++YTTL++          A KVF +M+ D                            
Sbjct: 395 GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEV 454

Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                   +K+DI  +  ++EG C+ G V++   +   +   G  PNV TY ++ +G+  
Sbjct: 455 FDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 514

Query: 441 ARKPGEALLLWKEIKE 456
            R   EA  L K++KE
Sbjct: 515 KRLLQEAYALLKKMKE 530



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 199/481 (41%), Gaps = 88/481 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A A + K    + L ++M        + TYN++I    R S+  L + +
Sbjct: 45  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  Y     +  A  +V  M E                   
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE------------------- 145

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P++  +TTL+ G     + S+ V +
Sbjct: 146 -------------------------------MGYRPDTITFTTLIHGLFLHNKASEAVAL 174

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M ++      P+ VTY  VV+ L K G  D A  +L +M    + A+ + +N ++  
Sbjct: 175 VDRMVQR---GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDS 231

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   +D A  L +EM +   I P+VV+Y+ LI         + A    ++M  + I P
Sbjct: 232 LCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 290

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             +++  L+ AF    +   A K++D+M++   DP    DI  +N LV G+C    +++A
Sbjct: 291 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP----DIFTYNSLVNGFCMHDRLDKA 346

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EG 464
           K++ E M     +P+V TY +L  G   +++  +   L++E+  R  V          +G
Sbjct: 347 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 406

Query: 465 VNADSD---------------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           +  D D               +PP +     LLD L +         KALE+   M++  
Sbjct: 407 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN----NGKLEKALEVFDYMQKSE 462

Query: 510 I 510
           I
Sbjct: 463 I 463



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 178/439 (40%), Gaps = 78/439 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P++  +  VV+ L   GD          D+ +  + K     I    + D   
Sbjct: 178 MVQRGCQPNLVTYGVVVNGLCKRGDT---------DLALNLLNKMEAAKI----EADVVI 224

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++++          L LF +M   G +P+V+TY+ +I       R      +L  ++
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G    AE +   M +   D        D+  Y+S   G 
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP-------DIFTYNSLVNGF 337

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D   ++FE              ++ K   P+   Y TL+KG+    RV D   +
Sbjct: 338 CMHDRLDKAKQMFE-------------FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 384

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         D VTYTT++  L   G  D A++V  +M   GVP + +TY+ILL G
Sbjct: 385 F---REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 441

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +++KA E+   M   ++I+ D+  Y  +I+G             F  +  +G+ P
Sbjct: 442 LCNNGKLEKALEVFDYM-QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 500

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y                                    N ++ G C   L++EA  +
Sbjct: 501 NVVTY------------------------------------NTMISGLCSKRLLQEAYAL 524

Query: 416 IERMKENGFYPNVATYGSL 434
           +++MKE+G  PN  TY +L
Sbjct: 525 LKKMKEDGPLPNSGTYNTL 543


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 197/434 (45%), Gaps = 39/434 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P+    +T++  L   G+             VK+   F D  +    + +  +
Sbjct: 193 ILKLGYQPNTIILTTLMKGLCLKGE-------------VKKSLHFHDKVVAQGFQMNQVS 239

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y  +LN    +G+ +  ++L   + +   +PDV+ YN +I  LC          F  E +
Sbjct: 240 YGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTE-M 298

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSEN 177
              GI   + T+ +L+  +   G L  A +++  M  +    DV      +D    +   
Sbjct: 299 NSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILID----ALCK 354

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           EG   +   +   +    + P             N   Y+TLM GY   G V +  ++  
Sbjct: 355 EGKLKEAKNLLGVMTKEGVKP-------------NVVTYSTLMDGYCLVGEVHNAKQIFH 401

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           AM + E N   P   +Y  +++ L K  S+D A  +L EM    V  N +TYN L+ G C
Sbjct: 402 AMVQTEVN---PSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLC 458

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  +I  A +L++E+    +   DV++Y  L+DG     +   A+  F +M+ RGI P K
Sbjct: 459 KSGRITSALDLMKELHHRGQ-PADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNK 517

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            +YT L+      ++ K A K+F  +L      +D+  +N+++ G C+ G+++EA  +  
Sbjct: 518 YTYTALIDGLCKGARLKNAQKLFQHILVKGCC-IDVYTYNVMIGGLCKEGMLDEALAMKS 576

Query: 418 RMKENGFYPNVATY 431
           +M++NG  P+  T+
Sbjct: 577 KMEDNGCIPDAVTF 590



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 143/317 (45%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ + F  N   Y TL+ G    G     +++L   R  ED ++ PD V Y T++  L K
Sbjct: 228 VVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLL---RMIEDRSTRPDVVMYNTIIDGLCK 284

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A     EM   G+  + ITY+ L+ G+C   Q+  A  LL EM     I PDV 
Sbjct: 285 DKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLK-NINPDVY 343

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y ILID          A      M   G+ P  ++Y+TLM  + L  +   A ++F  M
Sbjct: 344 TYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAM 403

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++   V   + ++N+++ G C+   V+EA  ++  M      PN  TY SL +G+  + +
Sbjct: 404 VQT-EVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGR 462

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
              AL L KE+  R +            P  +     LLD L     +     KA+ +  
Sbjct: 463 ITSALDLMKELHHRGQ------------PADVITYTSLLDGLC----KNQNLDKAIALFM 506

Query: 504 CMEEHGIPPNKTKYKKI 520
            M+E GI PNK  Y  +
Sbjct: 507 KMKERGIQPNKYTYTAL 523



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 188/407 (46%), Gaps = 26/407 (6%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRK 109
           V   +PD    + ++N   +LG+      +  ++ + G +P+ +    ++K LC +   K
Sbjct: 160 VKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVK 219

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRE 167
             L F  ++++  G  +   ++ +L+      G+   A  +++ +  R  R DV      
Sbjct: 220 KSLHF-HDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVM---- 274

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                Y++  +G   D      KL+  + +  +E  +  +   P+   Y+TL+ G+   G
Sbjct: 275 -----YNTIIDGLCKD------KLVNEAYDFYTE--MNSRGIFPDVITYSTLICGFCLAG 321

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           ++     +L  M  +  N   PD  TYT ++ AL K G +  A+ +L  MT+ GV  N +
Sbjct: 322 QLMGAFSLLNEMTLKNIN---PDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVV 378

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY+ L+ GYC   ++  AK++   M    ++ P V SYNI+I+G         A+    E
Sbjct: 379 TYSTLMDGYCLVGEVHNAKQIFHAMV-QTEVNPSVCSYNIMINGLCKGKSVDEAMNLLRE 437

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  + + P  ++Y +L+     S +   A  +  E L       D++ +  L++G C+  
Sbjct: 438 MLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKE-LHHRGQPADVITYTSLLDGLCKNQ 496

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++A  +  +MKE G  PN  TY +L +G+    +   A  L++ I
Sbjct: 497 NLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHI 543



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 123/292 (42%), Gaps = 21/292 (7%)

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V D V     M    +    P  + +  ++ +LVK      A  +  +M   G+  + +T
Sbjct: 113 VHDAVSQFNGMLLMRNT---PSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVT 169

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
            +IL+  +C   Q+  +  +L ++      +P+ +    L+ G  L  +   +L F +++
Sbjct: 170 LSILINCFCHLGQMAFSFSVLGKIL-KLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKV 228

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
            A+G    ++SY TL+       + + A K+   M+ D   + D+V +N +++G C+  L
Sbjct: 229 VAQGFQMNQVSYGTLLNGLCKIGETRCAIKLL-RMIEDRSTRPDVVMYNTIIDGLCKDKL 287

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           V EA      M   G +P+V TY +L  G  LA +   A  L  E+  +           
Sbjct: 288 VNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLK----------- 336

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 + PD      L D   +    ++A  ++  M + G+ PN   Y  +
Sbjct: 337 -----NINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTL 383



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 108/258 (41%), Gaps = 18/258 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   Y+ +++    +G+     Q+F  M +    P V +YN+MI    +       + 
Sbjct: 374 KPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMN 433

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +L   +     T+ SL+      G +  A  +++ +   R     +I    L D  
Sbjct: 434 LLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHH-RGQPADVITYTSLLDGL 492

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N+ + D    +F K+    I P             N   YT L+ G     R+ +  +
Sbjct: 493 CKNQ-NLDKAIALFMKMKERGIQP-------------NKYTYTALIDGLCKGARLKNAQK 538

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   +  +       D  TY  ++  L K G +D A  + ++M   G   + +T+ I+++
Sbjct: 539 LFQHILVK---GCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIR 595

Query: 295 GYCQQLQIDKAKELLREM 312
              ++ + DKA++LL EM
Sbjct: 596 SLFEKDENDKAEKLLHEM 613


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 21/311 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           +PN   Y  L++G+ + G +   +   G M R   N   P+ VTY T++ A  K G +D 
Sbjct: 211 SPNVYTYNILIRGFCSVGELQKGLGCFGEMER---NGCLPNVVTYNTLIDAYCKMGRIDE 267

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +L  M+  G+  N I+YN+++ G C++  + +A E+L EM       PD V+YN L+
Sbjct: 268 AFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTYNTLL 326

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G+    +   AL    EM   G++P+ ++YT L+ +   +     A + FD+M R   +
Sbjct: 327 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM-RIRGL 385

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           + +   +  L++G+ R GL+ EA RI+  M E+GF P+V TY +  +G  +  +  EAL 
Sbjct: 386 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 445

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           + +E+ E+                 L PD      +     R     +A ++   M E G
Sbjct: 446 VVQEMVEK----------------GLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 489

Query: 510 IPPNKTKYKKI 520
           + P+   Y  +
Sbjct: 490 VSPDAVTYSSL 500



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 136/601 (22%), Positives = 250/601 (41%), Gaps = 103/601 (17%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           SG++P V ++++V+  +  S       SVKL    V R        I S   P+   YN 
Sbjct: 171 SGFMPGVLSYNSVLDAIVRSRG-----SVKLSAEEVYR------EMIRSRVSPNVYTYNI 219

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++    ++G+ +K L  F +M   G  P+V+TYN +I    +  R      +L+ +   G
Sbjct: 220 LIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKG 279

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +   + ++  ++      G ++ A  I++ M        ++     L  Y    EG+   
Sbjct: 280 MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC--KEGNFHQ 337

Query: 184 DDEVFEKLLPNSINPS--SEPPLLP--------------------KTFAPNSRIYTTLMK 221
              +  +++ N ++PS  +   L+                     +   PN R YTTL+ 
Sbjct: 338 ALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 397

Query: 222 GYMNEGRVSDTVRM--------------------------------LGAMRRQEDNASHP 249
           G+  +G +++  R+                                LG ++   +    P
Sbjct: 398 GFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 457

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D V+Y+T++S   + G +DRA Q+  EM   GV  + +TY+ L++G C+  ++ +A +L 
Sbjct: 458 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 517

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           +EM  D  + PD  +Y  LI+ + +  D   AL   +EM  +G  P  ++Y+ L+     
Sbjct: 518 QEML-DMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNK 576

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE---------------GYCRMGLVEEAKR 414
            ++ + A ++  +++ +  V  D V ++ L+E               G+C  GL+ EA R
Sbjct: 577 QARTREAKRLLFKLIYEESVPSD-VTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADR 635

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK------------- 461
           + E M E    P  A Y  + +G        +A  L+KE+     V              
Sbjct: 636 VFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALF 695

Query: 462 KEGVNAD-----SDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           KEG+N +      D     + +E EL   L +I  +       L ++  M + G+ PN  
Sbjct: 696 KEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLPNSG 755

Query: 516 K 516
           K
Sbjct: 756 K 756



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 18/216 (8%)

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A+E+ REM   +++ P+V +YNILI GF  + +    L  F EM   G  P  ++Y TL+
Sbjct: 198 AEEVYREMIR-SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI 256

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            A+    +   A  +   M     ++ +++++N+++ G CR G ++EA  I+E M   GF
Sbjct: 257 DAYCKMGRIDEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGF 315

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            P+  TY +L NG        +AL++        E+ + GV+          P      A
Sbjct: 316 TPDEVTYNTLLNGYCKEGNFHQALVI------HAEMVRNGVS----------PSVVTYTA 359

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L +   +A    +A+E    M   G+ PN+  Y  +
Sbjct: 360 LINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 395


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 135/578 (23%), Positives = 242/578 (41%), Gaps = 82/578 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLF------------------------D 36
           M   G  P V  ++ +V RL  +G     E+ +LF                        D
Sbjct: 36  MTEKGVNPDVATYTIIVDRLCRAGKVD--EADELFHKMIERGCSANTVAYNALINGLCKD 93

Query: 37  VVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
             ++R  K  +       +PD   YN +L+    +GK  +  Q FD M   G  PDV+ Y
Sbjct: 94  ENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAY 153

Query: 97  NVMIKLCARASRKHLLVFVLERILEMG---ITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           N ++    +   K    + L + ++M    +   + T+ +L+    GF  +E  +  ++ 
Sbjct: 154 NGLLDALYKEG-KVAEAWGLFKTMDMADRKVAPDLITYNTLID---GFCRVEKTDEAMKL 209

Query: 154 MREGRRDVCKIIRELDLEDYSSEN--------EGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            ++       +I +  + D  + N        + + D+ +E+F+K++ +           
Sbjct: 210 FKD-------VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGC--------- 253

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
               APN   Y+ ++ G+    RV +  R L       +    PD +    V+  L KA 
Sbjct: 254 ----APNGATYSIVLSGHC---RVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAK 306

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D A +VL EM++IG   + +TYNILL G C+   +DKA EL   M D+    PD+VSY
Sbjct: 307 KVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG-CAPDIVSY 365

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           +++++G    +    A   F+ M  R + P  +++  LM     + +   A  + D M  
Sbjct: 366 SVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVM-S 424

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           +  V  D V    L+ G CR    +EA R+ + M E G   +V  +  +  G+    K  
Sbjct: 425 EHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLA 484

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
           +ALL +K +          V +D +  P +     L++AL    + A    +A++    M
Sbjct: 485 QALLFFKSM----------VKSDGEFSPDVVTYTTLVNAL----IEAGRVDQAVDYFQQM 530

Query: 506 EEHGIPPNKTKYKKIY--VEMHSRMFTSKHASQARQDR 541
              G  P+   Y  +   +    R   +   +QA +++
Sbjct: 531 TGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEK 568



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 135/249 (54%), Gaps = 5/249 (2%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K F P+   Y+T++ G    G+V++ + M+  M  +  N   PD  TYT +V  L +AG 
Sbjct: 4   KGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVN---PDVATYTIIVDRLCRAGK 60

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A ++  +M   G  AN + YN L+ G C+   I++A +LL EMA     EPD ++YN
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKG-YEPDNITYN 119

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LR 385
            ++ G   +   + A  FF+ M +RG +P  ++Y  L+ A     +   A  +F  M + 
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMA 179

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D +V  D++ +N L++G+CR+   +EA ++ + +   G+ P+  TY S+  G++      
Sbjct: 180 DRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMD 239

Query: 446 EALLLWKEI 454
           EA  ++K++
Sbjct: 240 EAEEMFKKM 248



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 206/459 (44%), Gaps = 34/459 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   Y+ +++     GK  + L++ ++M E G  PDV TY +++    RA +      
Sbjct: 7   EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +  +++E G +     + +L+       ++E A  +++ M     +   I     L    
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLC 126

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G   +  + F+ +      PS       + ++P+   Y  L+     EG+V++   
Sbjct: 127 --RMGKVSEAKQFFDSM------PS-------RGYSPDVVAYNGLLDALYKEGKVAEAWG 171

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M    D    PD +TY T++    +    D A ++  ++   G   + +TYN +L 
Sbjct: 172 LFKTM-DMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILL 230

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G  ++  +D+A+E+ ++M D     P+  +Y+I++ G   + + A  L  + EM  +  +
Sbjct: 231 GLARKSNMDEAEEMFKKMVDSG-CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFS 289

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  +    ++     + +   A+KV +EM +   V  D+V +N+L++G C+  LV++A  
Sbjct: 290 PDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVP-DVVTYNILLDGLCKTNLVDKAHE 348

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +   M +NG  P++ +Y  + NG+    K  +A +L+  + ER                 
Sbjct: 349 LFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER----------------K 392

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           L PD    + L D   +A    +A +++  M EH + P+
Sbjct: 393 LVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPD 431



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 191/442 (43%), Gaps = 38/442 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY P V A++ ++  L   G     E+  LF  +    RK +         PD   YN +
Sbjct: 145 GYSPDVVAYNGLLDALYKEGK--VAEAWGLFKTMDMADRKVA---------PDLITYNTL 193

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++    + K  + ++LF  +   G  PD +TYN ++   AR S       + +++++ G 
Sbjct: 194 IDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGC 253

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIRELDLED 172
                T+  +++ +   G++     + + M E R              +CK  +  D   
Sbjct: 254 APNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHK 313

Query: 173 YSSENEGDDDDDDEVFEKLL------PNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYM 224
              E        D V   +L       N ++ + E    ++    AP+   Y+ ++ G  
Sbjct: 314 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC 373

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
              +V D  R+L    R  +    PD VT+  ++  L KAG +D A+ +L  M+   V  
Sbjct: 374 KTNKVHDA-RVL--FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLP 430

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           + +T   L+ G C+  + D+A  L + M +   +  DV+ +NI++ G       A AL F
Sbjct: 431 DGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTV-ADVLPHNIVLAGLCREGKLAQALLF 489

Query: 345 FNEM-RARG-IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
           F  M ++ G  +P  ++YTTL+ A   + +   A   F +M        D VA+N L+ G
Sbjct: 490 FKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQM-TGSGCAPDYVAYNTLMNG 548

Query: 403 YCRMGLVEEAKRIIERMKENGF 424
             + G   +A R+ + MKE GF
Sbjct: 549 LRKQGRHIQADRLTQAMKEKGF 570



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 1/140 (0%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
            EPDVV+Y+ +I G         AL    EM  +G+ P   +YT ++     + +   A+
Sbjct: 6   FEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEAD 65

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           ++F +M+ +     + VA+N L+ G C+   +E A +++E M   G+ P+  TY ++ +G
Sbjct: 66  ELFHKMI-ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSG 124

Query: 438 ISLARKPGEALLLWKEIKER 457
           +    K  EA   +  +  R
Sbjct: 125 LCRMGKVSEAKQFFDSMPSR 144



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +G  P  ++Y+T++     + +   A ++ +EM  +  V  D+  + ++V+  CR G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEM-TEKGVNPDVATYTIIVDRLCRAG 59

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            V+EA  +  +M E G   N   Y +L NG+        A  L +E+  +
Sbjct: 60  KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASK 109



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 19/146 (13%)

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D+V ++ ++ G C+ G V EA  ++E M E G  P+VATY  + + +  A K  EA  L+
Sbjct: 9   DVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELF 68

Query: 452 KEIKER-CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            ++ ER C       NA   L   L  DE +               +A +++  M   G 
Sbjct: 69  HKMIERGCSANTVAYNA---LINGLCKDENI--------------ERAYKLLEEMASKGY 111

Query: 511 PPNKTKYKKIYVEMHSRMFTSKHASQ 536
            P+   Y  I   +  RM     A Q
Sbjct: 112 EPDNITYNTILSGL-CRMGKVSEAKQ 136


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 194/409 (47%), Gaps = 38/409 (9%)

Query: 56  PDTAAYNAVLNA-CAN--LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           PD   Y AV++A C    L + +KFL+   +M      P+V+TY V+I    +  R    
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLE---EMANRNLTPNVVTYTVLIDGLCKGGRVDEA 100

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           V +L ++ +  +     T+ SL++   G    E A      + E     C      D+  
Sbjct: 101 VALLSKMRKKCVPT-AVTYNSLIS---GLCKAERASEAYDLLEEMVYSGCIP----DIFT 152

Query: 173 YSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y++   G       DD   VFE+             L+ + F P+   Y+ L+ G   EG
Sbjct: 153 YTTLITGFCKSKKSDDALRVFEQ-------------LVARGFRPDVVTYSCLIDGLCKEG 199

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ + + + G M +    +  P+ VTY +++S   + G MD A  +L  M   G   + +
Sbjct: 200 RLKEAIDLFGRMIKS--GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 257

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY  L+ G+C+  ++D A +LL +M     + PDVV++  L+DG    +  + A+    E
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKG-LTPDVVTFTSLMDGLCRENRLSDAVHILGE 316

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           MR +  +PT  +Y T++  +  ++Q + A K    ML +     ++V++N+++ G C++ 
Sbjct: 317 MRRKSCSPTVYTYNTILDGYCRANQLEEARKF---MLEEMDCPPNVVSFNIMIRGLCKVN 373

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              EA  ++E  +     P+V  Y ++ +G+   +K  EA  +++++ E
Sbjct: 374 RSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLE 422



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 145/317 (45%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P+   YT ++     E R+ +  + L  M  +      P+ VTYT ++  L K
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN---LTPNVVTYTVLIDGLCK 93

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +D A  +L++M +  VP   +TYN L+ G C+  +  +A +LL EM     I PD+ 
Sbjct: 94  GGRVDEAVALLSKMRKKCVPTA-VTYNSLISGLCKAERASEAYDLLEEMVYSGCI-PDIF 151

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI GF     S  AL  F ++ ARG  P  ++Y+ L+       + K A  +F  M
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 211

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++      + V +N L+ G+CRMG ++EA  ++ERM E G  P+V TY +L NG     +
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A  L  ++  +                 L PD     +L D   R      A+ I+ 
Sbjct: 272 LDDAYDLLNQMTRK----------------GLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 504 CMEEHGIPPNKTKYKKI 520
            M      P    Y  I
Sbjct: 316 EMRRKSCSPTVYTYNTI 332



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 180/411 (43%), Gaps = 65/411 (15%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + S   PD   Y  ++       K    L++F+Q+   G +PDV+TY+ +I    +  R 
Sbjct: 142 VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRL 201

Query: 110 HLLVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
              + +  R+++ G   CM    T+ SL++ +   G ++ A  +++ M E          
Sbjct: 202 KEAIDLFGRMIKSGS--CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE---------- 249

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                                            S P ++          YTTLM G+   
Sbjct: 250 -------------------------------TGSSPDVVT---------YTTLMNGFCKL 269

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            R+ D   +L  M R+      PD VT+T+++  L +   +  A  +L EM R       
Sbjct: 270 ARLDDAYDLLNQMTRK---GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 326

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            TYN +L GYC+  Q+++A++ + E  D     P+VVS+NI+I G   ++ S+ A+    
Sbjct: 327 YTYNTILDGYCRANQLEEARKFMLEEMD---CPPNVVSFNIMIRGLCKVNRSSEAMELVE 383

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           E R R   P  + YTT++       +   A +V+ +ML +P    + + ++ L+ G C  
Sbjct: 384 EARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNA 443

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G+++ A+  IE+    G  PN+ TY  L +    A +  +A  L  ++ +R
Sbjct: 444 GMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 38/351 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V  +S ++  L   G     E++ LF  ++K               P+T  YN++
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGR--LKEAIDLFGRMIKS----------GSCMPNTVTYNSL 227

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++    +GK  + + L ++M E G+ PDV+TY  ++    + +R      +L ++   G+
Sbjct: 228 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
           T  + TF SL+        L  A  I+  MR              L+ Y   N+ ++   
Sbjct: 288 TPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK 347

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             + E   P                 PN   +  +++G     R S+ + ++   RR+  
Sbjct: 348 FMLEEMDCP-----------------PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRC 390

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT-RIGVPANRITYNILLKGYCQQLQID 303
           N   PD V YTTV+  L +   +D A +V  +M    G   N ITY+ L+ G C    +D
Sbjct: 391 N---PDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLD 447

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           +A+  +     +    P++ +YN+LID F   +    A    ++M  RG  
Sbjct: 448 RARGYI-----EKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFG 493



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M+       D V +  L++G C++  +E+A   + +M   GF+P+V TY ++ + + +  
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
           +  EA    +E+            A+ +L P +     L+D L     +     +A+ ++
Sbjct: 61  RLHEARKFLEEM------------ANRNLTPNVVTYTVLIDGLC----KGGRVDEAVALL 104

Query: 503 ACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQA 537
           + M +  +P   T     Y  + S +  ++ AS+A
Sbjct: 105 SKMRKKCVPTAVT-----YNSLISGLCKAERASEA 134


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 214/512 (41%), Gaps = 73/512 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R+G LP VK  + ++  L    D+  +   K    V   + +F         KP    
Sbjct: 171 MIRNGLLPDVKNCNRILRVLR---DENLLSKAK---NVYGMMEQFG-------IKPTVVT 217

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L++    G+  + L+L  +M E G  P+ +TYNV++   ++         ++E +L
Sbjct: 218 YNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML 277

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIREL 168
             G+ +   T+  L+  +   G    A  +V+ M   R              +CK ++  
Sbjct: 278 NSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVT 337

Query: 169 DLE-DYSSENEGDDDDDDEVFEKLLPNSINPS--SEPPLL-----PKTFAPNSRIYTTLM 220
            +   +S   +     D   F  LL         SE  LL      +   P    Y TL+
Sbjct: 338 GVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLI 397

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM--- 277
            G    G +   +R+    +   D    PD  TYT +V+   K G +  AR    EM   
Sbjct: 398 HGLCMWGYLDAALRL---KKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSK 454

Query: 278 ----------TRI----------------------GVPANRITYNILLKGYCQQLQIDKA 305
                     TRI                      G P + ITYN+ +   CQQ   ++A
Sbjct: 455 GLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEA 514

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +LL  M  D  I PD V+Y  +I+GF+       A   FNEM ++G+AP+ ++YT L+ 
Sbjct: 515 CDLLENMVSDGLI-PDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIH 573

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           A A      LA   F +ML +  V  +++ +N ++ G C    ++EA +  + M+E G  
Sbjct: 574 AHAAKQMLDLAFMYFSKML-EKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGIL 632

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER 457
           PN  +Y  L N         EAL L++E+ +R
Sbjct: 633 PNKFSYTILINESCNMGYWEEALRLYREMLDR 664



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 34/332 (10%)

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           VF+K++ N +              P+ +    +++   +E  +S    + G M   E   
Sbjct: 167 VFDKMIRNGL-------------LPDVKNCNRILRVLRDENLLSKAKNVYGMM---EQFG 210

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P  VTY T++ +  K G +D+A ++L+EM   G   N +TYN+L+ G  ++ ++++AK
Sbjct: 211 IKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAK 270

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            L+ EM +   +     +YN LI+GF        A     EM  R   PT  +Y TLM  
Sbjct: 271 GLIEEMLNSG-LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
                Q       F +ML+  +   DIV++N L+ GYCR G + EA  + + +K     P
Sbjct: 330 LCKWVQVTGVRLRFSDMLKS-KFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVP 388

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
            V TY +L +G          L +W  +     +KKE  +        L PD      L 
Sbjct: 389 TVITYNTLIHG----------LCMWGYLDAALRLKKEMTDQG------LFPDIFTYTILV 432

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           + C +  +   A      M   G+ P++  Y 
Sbjct: 433 NGCFKLGYVSMARGFFNEMLSKGLKPDRFAYN 464



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 74/377 (19%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    Y T++  Y  EGRV   + +L  M   ++   +P+ VTY  +V+ L K G +++A
Sbjct: 213 PTVVTYNTMLDSYCKEGRVDQALELLSEM---QERGCYPNDVTYNVLVNGLSKKGELEQA 269

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           + ++ EM   G+  +  TYN L+ G+CQ+    +A +L+ EM +     P + +YN L+ 
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAF-PTLSTYNTLMY 328

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRV 389
           G        G    F++M      P  +S+ +L+  +  +     A  +FDE+  RD  +
Sbjct: 329 GLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRD--L 386

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG------ISLAR- 442
              ++ +N L+ G C  G ++ A R+ + M + G +P++ TY  L NG      +S+AR 
Sbjct: 387 VPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARG 446

Query: 443 ----------KP----------GE---------------------------------ALL 449
                     KP          GE                                 AL 
Sbjct: 447 FFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALC 506

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
                +E C++ +   N  SD    L PD     ++ +  V+    RKA E+   M   G
Sbjct: 507 QQGNFEEACDLLE---NMVSD---GLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKG 560

Query: 510 IPPNKTKYKKIYVEMHS 526
           + P+   Y  + +  H+
Sbjct: 561 VAPSVVTY-TVLIHAHA 576



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 177/392 (45%), Gaps = 29/392 (7%)

Query: 37  VVVKRVR-KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
           V V  VR +FSD  + S   PD  ++N++L      G   +   LFD++      P V+T
Sbjct: 334 VQVTGVRLRFSDM-LKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVIT 392

Query: 96  YNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           YN +I  LC        L    E + + G+   + T+  LV      G + +A      M
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKE-MTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEM 451

Query: 155 -REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
             +G +         D   Y++   G+         K+   S+  S +  +L   F P+ 
Sbjct: 452 LSKGLKP--------DRFAYNTRIVGE--------MKIADTSVAFSMQEEMLAAGFPPDV 495

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y   +     +G   +   +L  M     +   PDHVTYT++++  VK G + +AR+V
Sbjct: 496 ITYNVFVHALCQQGNFEEACDLLENM---VSDGLIPDHVTYTSIINGFVKNGHLRKAREV 552

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM   GV  + +TY +L+  +  +  +D A     +M + + +  +V++YN +I+G  
Sbjct: 553 FNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKS-VPANVITYNAIINGLC 611

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           +      A  +F+EM  +GI P K SYT L+         + A +++ EML D +++ D 
Sbjct: 612 MTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREML-DRKIQPDS 670

Query: 394 VAWNMLVEGYCR---MGLVEEAKRIIERMKEN 422
              ++ ++   R   +  V+  + +I+ +++N
Sbjct: 671 FTHSVFLKNLHRDYQVHAVQCVESLIQNVEDN 702



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
           +LI      L  F++M   G+ P   +   +++     +    A  V+  M+    +K  
Sbjct: 156 VLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYG-MMEQFGIKPT 214

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
           +V +N +++ YC+ G V++A  ++  M+E G YPN  TY  L NG+S   K GE
Sbjct: 215 VVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLS---KKGE 265


>gi|297838671|ref|XP_002887217.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333058|gb|EFH63476.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 200/476 (42%), Gaps = 69/476 (14%)

Query: 55  KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KPD  A NA L AC   L        + + M   G KPD  ++  +  L AR   +  + 
Sbjct: 188 KPDLVASNAALEACCWQLESLADAEDVIESMAVLGVKPDESSFGFLAYLYARKGLREKIS 247

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLED 172
            +   +   G       + ++++ YV  GDL+ +++ I+ +++ G               
Sbjct: 248 EIENSMDGFGFVSRRILYSNVISGYVKSGDLDSVSDVILHSLKRG--------------- 292

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                 G+D    E                             Y  L+KG++    V   
Sbjct: 293 ------GEDSSFRE---------------------------ETYCELVKGFIESKSVKCL 319

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +++   ++ E  +   +      +V+A VK G     + +L EM   G       Y  +
Sbjct: 320 AKLIIEAQKLESLSIDVNGSVGFGIVNACVKLGF--SGKSILDEMNAQGGSGGIGVYVPI 377

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           LK YC++    +A +L+ E++    ++ DV +YN +I+  +   D   ALT F +MR   
Sbjct: 378 LKAYCKEGGTAEATQLVTEISSSG-LQLDVETYNTMIEFSMTKQDFLSALTLFKDMRETK 436

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           ++  K  Y T+M     + +P L  +  +E++ DPRV+V    WN ++  +C+ G +E+A
Sbjct: 437 VSDLKRCYLTIMTGLLENQRPDLMAEFVEEVVEDPRVEVKSHDWNSIIHAFCKSGRLEDA 496

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           K    RM    + PN  TY SL NG     K  E ++LWKE K++               
Sbjct: 497 KSTFRRMAFLQYEPNNQTYLSLINGYVSCEKYFEVVVLWKEFKDK--------------- 541

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
              K +  L DA  +  V+  FF  AL+++   +E  I  +K +YK  ++E    +
Sbjct: 542 -KAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFMETQKNL 596


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/489 (23%), Positives = 217/489 (44%), Gaps = 36/489 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            + D  +YNAVL       +     +L D+M      P+++T+N +I    R      + 
Sbjct: 212 CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDV 161
            VL ++ E G T  +  + +++      G LE+A  I+  M                + +
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C   R  + E+  SE    D   D+V   +L +    +            +L     P+ 
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT++ G+  EG + + V +L +M         P+ V+YT V+  L  AG    A ++
Sbjct: 392 ITYTTVINGFCKEGLIDEAVMLLKSM---SSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           +++M + G P N +T+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG  
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLG 507

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  AL   N M  +GI+P  I Y+++  A +   +     ++FD  ++D  ++ D 
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN-IKDTTIRSDA 566

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N ++   C+    + A      M  NG  PN +TY  L  G++      EA  L  E
Sbjct: 567 VLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSE 626

Query: 454 IKERCEVKKE-----GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
           +  R  ++K      G++  +      K +E L  A+ +       ++  +EI+  +E  
Sbjct: 627 LCSRGALRKHLMRHFGISNCTQENGKQKCEENLTSAVDN------NYKLPIEILGFLEIQ 680

Query: 509 GIPPNKTKY 517
            + P + ++
Sbjct: 681 NLRPGEKQF 689



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/530 (21%), Positives = 202/530 (38%), Gaps = 135/530 (25%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           DT   N VLNA    G   + + L  ++  FG + D+++YN ++K    A R   +  ++
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELM 239

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++ +     + TF +L+      G  E    ++  M E                    
Sbjct: 240 DEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE-------------------- 279

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                             P+ R+Y T++ G   EG +     +L
Sbjct: 280 ------------------------------HGCTPDIRMYATIIDGICKEGHLEVANEIL 309

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
               R       P+ V Y TV+  L  A     A ++L+EM +   P + +T+NIL+  +
Sbjct: 310 ---NRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGI 353
           CQ   +D+  ELL +M     + PDV++Y  +I+GF    LID+   A+     M + G 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCM-PDVITYTTVINGFCKEGLIDE---AVMLLKSMSSCGC 422

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  +SYT ++K    + +   A ++  +M++      + V +N L+   C+ GLVE+A 
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            ++++M  NG  P++ +Y ++ +G+                                   
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLG---------------------------------- 507

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS------- 526
                            +A    +ALE++  M   GI PN   Y  I   +         
Sbjct: 508 -----------------KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKV 550

Query: 527 -RMFTSKHASQARQD------------RRRERKRAAEAFKFWLG---LPN 560
            +MF +   +  R D            +R E  RA + F + +    +PN
Sbjct: 551 IQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 600



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 135/310 (43%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  +  +++G    GR++D + +L  M  +      P    Y  ++ A  ++G    +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFK---GCAPIPPMYHVILEAACRSGGFRNS 165

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL  M   G   +    N++L   C+Q  +D+A  LLR++A     E D+VSYN ++ 
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLK 224

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G  +           +EM     AP  +++ TL+     +   +  ++V  +M  +    
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQM-SEHGCT 283

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DI  +  +++G C+ G +E A  I+ RM   G  PNV  Y ++  G+  A +       
Sbjct: 284 PDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER------- 336

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           WKE +   E+  E    D  L      D+   + L D   +     + +E++  M  HG 
Sbjct: 337 WKEAE---ELLSEMFQKDCPL------DDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 511 PPNKTKYKKI 520
            P+   Y  +
Sbjct: 388 MPDVITYTTV 397



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 167/388 (43%), Gaps = 28/388 (7%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS---------K 55
           GYL     +  V   LA   + G    ++++  ++  + K    ++ ++          K
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN VL    +  + K+  +L  +M +     D +T+N+++    +      ++ +
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE++L  G    + T+ +++  +   G ++ A  ++++M         +   + L+   S
Sbjct: 379 LEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D +E+  +++     P+      P TF        TL+     +G V   + +
Sbjct: 439 --AGRWVDAEELMSQMIQQGCPPN------PVTF-------NTLINFLCKKGLVEQAIEL 483

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M     N   PD ++Y+TV+  L KAG  + A ++L  M   G+  N I Y+ +   
Sbjct: 484 LKQMLV---NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACA 540

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             ++ +++K  ++   +  D  I  D V YN +I       ++  A+ FF  M + G  P
Sbjct: 541 LSREGRVNKVIQMFDNI-KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEM 383
            + +YT L+K  A     K A ++  E+
Sbjct: 600 NESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 21/234 (8%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           + YN ++ GYC+  Q+  A+     +A    + P+  ++  ++ G       A AL   +
Sbjct: 80  VAYNAMVAGYCRAGQLAAAR----RLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  +G AP    Y  +++A   S   + + +V + M       +D    N+++   C  
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM-HAKGCTLDTGNCNLVLNAICEQ 194

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G V+EA  ++ ++   G   ++ +Y ++  G+ +A++       W +++   E+  E V 
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKR-------WGDVE---ELMDEMVR 244

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            D        P+    + L     R   F +  E++A M EHG  P+   Y  I
Sbjct: 245 VDC------APNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATI 292


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 194/409 (47%), Gaps = 38/409 (9%)

Query: 56  PDTAAYNAVLNA-CAN--LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           PD   Y AV++A C    L + +KFL+   +M      P+V+TY V+I    +  R    
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLE---EMANRNLTPNVVTYTVLIDGLCKGGRVDEA 100

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           V +L ++ +  +     T+ SL++   G    E A      + E     C      D+  
Sbjct: 101 VALLSKMRKKCVPT-AVTYNSLIS---GLCKAERASEAYDLLEEMVYSGCIP----DIFT 152

Query: 173 YSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y++   G       DD   VFE+             L+ + F P+   Y+ L+ G   EG
Sbjct: 153 YTTLITGFCKSKKSDDALRVFEQ-------------LVARGFRPDVVTYSCLIDGLCKEG 199

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ + + + G M +    +  P+ VTY +++S   + G MD A  +L  M   G   + +
Sbjct: 200 RLKEAIDLFGRMIKS--GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 257

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY  L+ G+C+  ++D A +LL +M     + PDVV++  L+DG    +  + A+    E
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKG-LTPDVVTFTSLMDGLCRENRLSDAVHILGE 316

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           MR +  +PT  +Y T++  +  ++Q + A K    ML +     ++V++N+++ G C++ 
Sbjct: 317 MRRKSCSPTVYTYNTILDGYCRANQLEEARKF---MLEEMDCPPNVVSFNIMIRGLCKVN 373

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              EA  ++E  +     P+V  Y ++ +G+   +K  EA  +++++ E
Sbjct: 374 RSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLE 422



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 180/411 (43%), Gaps = 65/411 (15%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + S   PD   Y  ++       K    L++F+Q+   G +PDV+TY+ +I    +  R 
Sbjct: 142 VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRL 201

Query: 110 HLLVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
              + +  R+++ G   CM    T+ SL++ +   G ++ A  +++ M E          
Sbjct: 202 KEAIDLFGRMIKSGS--CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE---------- 249

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                                            S P ++          YTTLM G+   
Sbjct: 250 -------------------------------TGSSPDVVT---------YTTLMNGFCKL 269

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            R+ D   +L  M R+      PD VT+T+++  L +   +  A  +L EM R       
Sbjct: 270 ARLDDAYDLLNQMTRK---GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 326

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            TYN +L GYC+  Q+++A++ + E  D     P+VVS+NI+I G   ++ S+ A+    
Sbjct: 327 YTYNTILDGYCRANQLEEARKFMLEEMD---CPPNVVSFNIMIRGLCKVNRSSEAMELVE 383

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           E R R   P  + YTT++       +   A +V+ +ML +P    + + ++ LV G C  
Sbjct: 384 EARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNA 443

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G+++ A+  IE+    G  PN+ TY  L +    A +  +A  L  ++ +R
Sbjct: 444 GMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 145/317 (45%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P+   YT ++     E R+ +  + L  M  +      P+ VTYT ++  L K
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN---LTPNVVTYTVLIDGLCK 93

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +D A  +L++M +  VP   +TYN L+ G C+  +  +A +LL EM     I PD+ 
Sbjct: 94  GGRVDEAVALLSKMRKKCVPTA-VTYNSLISGLCKAERASEAYDLLEEMVYSGCI-PDIF 151

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI GF     S  AL  F ++ ARG  P  ++Y+ L+       + K A  +F  M
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 211

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++      + V +N L+ G+CRMG ++EA  ++ERM E G  P+V TY +L NG     +
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A  L  ++  +                 L PD     +L D   R      A+ I+ 
Sbjct: 272 LDDAYDLLNQMTRK----------------GLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 504 CMEEHGIPPNKTKYKKI 520
            M      P    Y  I
Sbjct: 316 EMRRKSCSPTVYTYNTI 332



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 109/207 (52%), Gaps = 3/207 (1%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N+   D VTYT+++  L K   +++A   L +M   G   +  TY  ++   C + ++ +
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A++ L EMA +  + P+VV+Y +LIDG         A+   ++MR + + PT ++Y +L+
Sbjct: 65  ARKFLEEMA-NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLI 122

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                + +   A  + +EM+    +  DI  +  L+ G+C+    ++A R+ E++   GF
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIP-DIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 425 YPNVATYGSLANGISLARKPGEALLLW 451
            P+V TY  L +G+    +  EA+ L+
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLKEAIDLF 208



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 38/351 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V  +S ++  L   G     E++ LF  ++K               P+T  YN++
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGR--LKEAIDLFGRMIKS----------GSCMPNTVTYNSL 227

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++    +GK  + + L ++M E G+ PDV+TY  ++    + +R      +L ++   G+
Sbjct: 228 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
           T  + TF SL+        L  A  I+  MR              L+ Y   N+ ++   
Sbjct: 288 TPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK 347

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             + E   P                 PN   +  +++G     R S+ + ++   RR+  
Sbjct: 348 FMLEEMDCP-----------------PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRC 390

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT-RIGVPANRITYNILLKGYCQQLQID 303
           N   PD V YTTV+  L +   +D A +V  +M    G   N ITY+ L+ G C    +D
Sbjct: 391 N---PDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLD 447

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           +A+  +     +    P++ +YN+LID F   +    A    ++M  RG  
Sbjct: 448 RARGYI-----EKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFG 493



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M+       D V +  L++G C++  +E+A   + +M   GF+P+V TY ++ + + +  
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
           +  EA    +E+            A+ +L P +     L+D L     +     +A+ ++
Sbjct: 61  RLHEARKFLEEM------------ANRNLTPNVVTYTVLIDGLC----KGGRVDEAVALL 104

Query: 503 ACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQA 537
           + M +  +P   T     Y  + S +  ++ AS+A
Sbjct: 105 SKMRKKCVPTAVT-----YNSLISGLCKAERASEA 134


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 199/422 (47%), Gaps = 30/422 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   + N +L++    G+    + ++D ++  G  PDV T ++M+    +    ++ V  
Sbjct: 181 PSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDF 240

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC--KIIRELDLEDY 173
           ++ +  +G  L + T+ SL+   V  GD+E AE +++ M  G R +   K+   L ++ Y
Sbjct: 241 VKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLM--GERGILRNKVTLTLLIKGY 298

Query: 174 SSENEGDDDD--------------DDEVFEKLLPNSINPSS-------EPPLLPKTFAPN 212
             + + ++ +              D+  +  L+                  +L      N
Sbjct: 299 CRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMN 358

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
             I   L+ GY   G+VS+  R+L    R  D    P+  +Y+T++    + G + +A  
Sbjct: 359 LFICNALINGYCKNGQVSEAERLL---MRMVDWDLEPESYSYSTLMDGFCREGLVTKAIS 415

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V  EM R+G+ +N +T+N LLKG C+    + A  +   M     + PD VSY  L+D  
Sbjct: 416 VYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRG-VTPDEVSYCTLLDLL 474

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
             + +   AL  +N++ ARG   +  ++ T++  F    +   A + F+ M ++   + D
Sbjct: 475 FKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRM-KELGFEPD 533

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
            V +  L++GYC++G VEEA ++ E+M++    P++  Y SL  G+  ++K  E + L  
Sbjct: 534 GVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLS 593

Query: 453 EI 454
           E+
Sbjct: 594 EM 595



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 189/391 (48%), Gaps = 37/391 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   Y  +++    LG  ++  ++ ++M +    P +  YN +I    ++ +   ++ 
Sbjct: 531 EPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMD 590

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLE-------------------IAETIVQAM- 154
           +L  +   G++  + T+ +L+A +   G L+                   I   IV ++ 
Sbjct: 591 LLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLY 650

Query: 155 REGRRDVCKIIRE----LDL-EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           R GR D   ++ +    LD+  D+   +     DD  +  + + ++++ SS      K+F
Sbjct: 651 RLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESS------KSF 704

Query: 210 A-PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           + PNS +Y   + G    G+V D  ++  ++  +      PD+ TY T++     AG+++
Sbjct: 705 SLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLR---GFSPDNFTYCTLIHGYSAAGNVN 761

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +  EM + G+  N ITYN L+ G C+   +D+A++L  ++     + P+V+SYNIL
Sbjct: 762 DAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKG-LAPNVISYNIL 820

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG+    ++  AL   N+M   GI+P+ I+Y+ L+  F        A  + DEM R+  
Sbjct: 821 IDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEM-RELF 879

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
              +I  +  LVEG+ + G V++  ++   M
Sbjct: 880 ADQNIAKFVKLVEGHVKCGEVKKIAKLHNMM 910



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/494 (21%), Positives = 203/494 (41%), Gaps = 95/494 (19%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D +P++ +Y+ +++     G   K + ++++M   G + +V+T+N ++K   R       
Sbjct: 389 DLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDA 448

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI---VQAMREGR---------RD 160
           + V   +L+ G+T    ++ +L+      G+   A  +   + A   GR           
Sbjct: 449 LHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMING 508

Query: 161 VCKIIRELDLEDYSSENE---------------------GDDDDDDEVFEKLLPNSINPS 199
            CK+ + ++ E+  +  +                     G+ ++  +V EK+   +I PS
Sbjct: 509 FCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPS 568

Query: 200 SE----------------------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            E                        +  K  +PN   Y TL+ G+ +EGR+    +   
Sbjct: 569 IELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLD---KAFT 625

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV--------------- 282
           A     +    P+ +  + +VS+L + G +D A  +L +M  + V               
Sbjct: 626 AYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADD 685

Query: 283 --------------------PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
                                 N + YNI + G C+  ++D AK++   +       PD 
Sbjct: 686 GNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRG-FSPDN 744

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
            +Y  LI G+    +   A +  +EM  RG+AP  I+Y  L+     S     A K+FD+
Sbjct: 745 FTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDK 804

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            L    +  +++++N+L++GYC+ G   EA  +  +M + G  P++ TY +L  G     
Sbjct: 805 -LHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQG 863

Query: 443 KPGEALLLWKEIKE 456
             G+A  L  E++E
Sbjct: 864 DMGKATNLLDEMRE 877



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 42/244 (17%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VTY +++   V  G M+RA  VL  M   G+  N++T  +L+KGYC+Q ++++A+++LRE
Sbjct: 254 VTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLRE 313

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG------------------- 352
           M     +  D  +Y +LIDG+  +     A+   +EM   G                   
Sbjct: 314 MERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNG 373

Query: 353 ----------------IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
                           + P   SY+TLM  F        A  V++EMLR   ++ ++V  
Sbjct: 374 QVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLR-VGIQSNVVTH 432

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE---ALLLWKE 453
           N L++G CR+G  E+A  +   M + G  P+  +Y +L   + L  K GE   AL LW +
Sbjct: 433 NSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTL---LDLLFKMGEFFRALALWND 489

Query: 454 IKER 457
           I  R
Sbjct: 490 ILAR 493



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 141/312 (45%), Gaps = 22/312 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F+P   ++  ++K Y  +G + + + +   M +       P   +   ++S+LV+ G   
Sbjct: 146 FSPT--VFDMILKIYCEKGMIKNALHVFDNMGKL---GCVPSLRSCNRLLSSLVRKGESS 200

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V   + R+G+  +  T +I++  YC+   ++ A + ++EM D    E +VV+YN L
Sbjct: 201 NAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEM-DYLGFELNVVTYNSL 259

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG + I D   A      M  RGI   K++ T L+K +    + + A KV  EM R   
Sbjct: 260 IDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEG 319

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           + +D  A+ +L++GYCR+  +++A R+ + M   G   N+    +L NG     +  EA 
Sbjct: 320 MVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEA- 378

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
                  ER  ++      D DL P       L+D       R     KA+ +   M   
Sbjct: 379 -------ERLLMRM----VDWDLEPESYSYSTLMDGFC----REGLVTKAISVYNEMLRV 423

Query: 509 GIPPNKTKYKKI 520
           GI  N   +  +
Sbjct: 424 GIQSNVVTHNSL 435



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L  G+ P    + T++   +A+G+     S++  D ++KR              P+   
Sbjct: 735 LLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLR--DEMLKR-----------GLAPNIIT 781

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N     G   +  +LFD++H  G  P+V++YN++I    +       + +  ++L
Sbjct: 782 YNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKML 841

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           + GI+  + T+ +L+  +   GD+  A  ++  MRE
Sbjct: 842 KEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRE 877


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 207/459 (45%), Gaps = 47/459 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY+P V A++ V+              + L D  +   R+F D  +     P+   YN +
Sbjct: 111 GYVPSVLAYNAVL--------------LALSDASLTSARRFFDSMLSDGVAPNVYTYNIL 156

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           + A    G  K+ L +   M   G  P+V+TYN ++    RA        ++  +L+ G+
Sbjct: 157 IRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGL 216

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSE-----NE 178
              + TF S+V      G +E A  +  + MREG           D   Y++        
Sbjct: 217 KPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAP--------DGVSYNTLVGGYCKA 268

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   +   VF ++    I              P+   +T+L+      G +   V ++  
Sbjct: 269 GCSHEALSVFAEMTQKGI-------------MPDVVTFTSLIHVMCKAGNLEWAVTLVRQ 315

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           MR   +     + VT+T ++    K G +D A   +  M +  +  + + YN L+ GYC 
Sbjct: 316 MR---ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCM 372

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++D+A+ELL EM +   ++PDVV+Y+ +I  +    D+  A     +M  +G+ P  I
Sbjct: 373 VGRMDEARELLHEM-EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAI 431

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y++L++      +   A+ +F  M++   ++ D   +  L++G+C+ G VE A  + ++
Sbjct: 432 TYSSLIRVLCEEKRLSDAHVLFKNMIK-LGLQPDEFTYTSLIDGHCKEGNVERALSLHDK 490

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEA-LLLWKEIKE 456
           M + G  P+V TY  L NG+S + +  EA  LL+K   E
Sbjct: 491 MVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE 529



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 191/418 (45%), Gaps = 35/418 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   +N+++N     GK +   ++FD+M   G  PD ++YN ++    +A   H  + 
Sbjct: 217 KPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALS 276

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V   + + GI   + TF SL+      G+LE A T+V+ MRE    + ++     ++ + 
Sbjct: 277 VFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFC 336

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G  DD       +    I PS                Y  L+ GY   GR+ +   
Sbjct: 337 --KKGFLDDALLAVRGMRQCRIKPSVV-------------CYNALINGYCMVGRMDEARE 381

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M   E     PD VTY+T++SA  K      A ++  +M   GV  + ITY+ L++
Sbjct: 382 LLHEM---EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIR 438

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C++ ++  A  L + M     ++PD  +Y  LIDG     +   AL+  ++M   G+ 
Sbjct: 439 VLCEEKRLSDAHVLFKNMI-KLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVL 497

Query: 355 PTKISYTTLMKAFALSS---------------QPKLANKVFDEMLRDPRVKVDIVAWNML 399
           P  ++Y+ L+   + S+               +P  AN  +D ++   R K ++ +   L
Sbjct: 498 PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCR-KAELKSVLAL 556

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++G+C  GL+ EA ++ + M +  +  + + Y  L +G   A    +AL   K++ +R
Sbjct: 557 LKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQR 614



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L    APN   Y  L++     G   + + +L  MR        P+ VTY T+V+A  +
Sbjct: 141 MLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMR---GAGCGPNVVTYNTLVAAFFR 197

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A +++  M   G+  N +T+N ++ G C+  +++ A+++  EM  +  + PD V
Sbjct: 198 AGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREG-LAPDGV 256

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           SYN L+ G+     S  AL+ F EM  +GI P  +++T+L+     +   + A  +  +M
Sbjct: 257 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQM 316

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R+  ++++ V +  L++G+C+ G +++A   +  M++    P+V  Y +L NG  +  +
Sbjct: 317 -RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGR 375

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  L  E++ +                 LKPD      +     +      A E+  
Sbjct: 376 MDEARELLHEMEAK----------------GLKPDVVTYSTIISAYCKNCDTHSAFELNQ 419

Query: 504 CMEEHGIPPNKTKYKKI 520
            M E G+ P+   Y  +
Sbjct: 420 QMLEKGVLPDAITYSSL 436



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 135/303 (44%), Gaps = 28/303 (9%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + Y  V+ AL  A S+  AR+    M   GV  N  TYNIL++  C +    +A  +
Sbjct: 114 PSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSI 172

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           LR+M   A   P+VV+YN L+  F    +  GA      M   G+ P  +++ +++    
Sbjct: 173 LRDM-RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMC 231

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + + + A KVFDEM+R+  +  D V++N LV GYC+ G   EA  +   M + G  P+V
Sbjct: 232 KAGKMEDARKVFDEMMREG-LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 290

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            T+ SL + +  A     A+ L ++++ER                 L+ +E    AL D 
Sbjct: 291 VTFTSLIHVMCKAGNLEWAVTLVRQMRER----------------GLQMNEVTFTALIDG 334

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRA 548
             +  F   AL  V  M +  I P+   Y  +          + +    R D  RE    
Sbjct: 335 FCKKGFLDDALLAVRGMRQCRIKPSVVCYNAL---------INGYCMVGRMDEARELLHE 385

Query: 549 AEA 551
            EA
Sbjct: 386 MEA 388



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 21/211 (9%)

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G  P+ ++Y  ++ A + +S    A + FD ML D  V  ++  +N+L+   C  G  +E
Sbjct: 111 GYVPSVLAYNAVLLALSDASLTS-ARRFFDSMLSDG-VAPNVYTYNILIRALCGRGHRKE 168

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-----LLLWKEIKERCEVKKEGVN 466
           A  I+  M+  G  PNV TY +L      A +   A     ++L   +K         VN
Sbjct: 169 ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVN 228

Query: 467 A--------------DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                          D  +   L PD    + L     +A    +AL + A M + GI P
Sbjct: 229 GMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMP 288

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQARQDRRR 543
           +   +  +   M          +  RQ R R
Sbjct: 289 DVVTFTSLIHVMCKAGNLEWAVTLVRQMRER 319


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 207/465 (44%), Gaps = 36/465 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++NA    G  ++  +L D M   G KP V TYN +I    +  +      V
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +L++G++    T+  L+       ++  AE I   M   +  V  ++    L    S
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM-PSQGVVPDLVSFSALIGLLS 509

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +N G  D   + F  +    +             AP++ IYT L+ G+   G +S+ +++
Sbjct: 510 KN-GCLDQALKYFRDMKNAGL-------------APDNVIYTILIGGFCRNGVMSEALKV 555

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  Q       D VTY T+++ L K   +  A ++  EMT  GV  +  T+  L+ G
Sbjct: 556 RDEMLEQ---GCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 612

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +   ++KA  L  EM     ++PDVV+YN LIDGF    +       +N+M +R I P
Sbjct: 613 YXKDGNMNKAVTLF-EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYP 671

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ISY  L+  +        A +++DEM+ +   +  I+  N +V+GYCR G   +A   
Sbjct: 672 NHISYGILINGYCNMGCVSEAFRLWDEMV-EKGFEATIITCNTIVKGYCRAGNAVKADEF 730

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M   G  P+  TY +L NG         A  L  +++            +S L P +
Sbjct: 731 LSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKME------------NSGLLPDV 778

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                +L+  +    R    ++A  I+  M E G+ P+++ Y  +
Sbjct: 779 ITYNVILNGFS----RQGRMQEAELIMLKMIERGVNPDRSTYTSL 819



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 45/379 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P + ++S ++  L+ +G           D  +K  R   +  +     PD   
Sbjct: 489 MPSQGVVPDLVSFSALIGLLSKNG---------CLDQALKYFRDMKNAGLA----PDNVI 535

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++      G   + L++ D+M E G   DV+TYN ++  LC    ++ +L    E  
Sbjct: 536 YTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLC----KEKMLSEADELF 591

Query: 120 LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYS 174
            EM   G+     TF +L+  Y   G++  A T+ + M  R  + DV      +D     
Sbjct: 592 TEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 651

Query: 175 SENEGDDDD-DDEVFEKLLPNSINPS------------SEP-----PLLPKTFAPNSRIY 216
           SE E  ++  +D +  ++ PN I+              SE       ++ K F       
Sbjct: 652 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 711

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            T++KGY   G        L  M  +      PD +TY T+++  +K  +MDRA  ++ +
Sbjct: 712 NTIVKGYCRAGNAVKADEFLSNMLLK---GIVPDGITYNTLINGFIKEENMDRAFALVNK 768

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  + ITYN++L G+ +Q ++ +A+ ++ +M +   + PD  +Y  LI+G +  +
Sbjct: 769 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG-VNPDRSTYTSLINGHVTQN 827

Query: 337 DSAGALTFFNEMRARGIAP 355
           +   A    +EM  RG  P
Sbjct: 828 NLKEAFRVHDEMLQRGFVP 846



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 24/268 (8%)

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           +++  LVK G +D A ++  E+ R GV  N  T NI++   C+  +I+  K  L +M ++
Sbjct: 328 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM-EE 386

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + PDVV+YN LI+ +        A    + M  +G+ P   +Y  ++     + +   
Sbjct: 387 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR 446

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A  V DEML+   +  D   +N+L+   CR   + +A+RI + M   G  P++ ++ +L 
Sbjct: 447 AKGVLDEMLK-IGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL- 504

Query: 436 NGISLARKPG---EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
             I L  K G   +AL  ++++K                   L PD  +   L     R 
Sbjct: 505 --IGLLSKNGCLDQALKYFRDMKN----------------AGLAPDNVIYTILIGGFCRN 546

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
               +AL++   M E G   +   Y  I
Sbjct: 547 GVMSEALKVRDEMLEQGCXLDVVTYNTI 574



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 106/266 (39%), Gaps = 18/266 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +  ++N     G   K + LF+ M +   KPDV+TYN +I    + S    +  +
Sbjct: 601 PDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 660

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              ++   I     ++  L+  Y   G +  A  +   M E   +   I     ++ Y  
Sbjct: 661 WNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCR 720

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G+    DE    +L   I              P+   Y TL+ G++ E  +    R 
Sbjct: 721 A--GNAVKADEFLSNMLLKGI-------------VPDGITYNTLINGFIKEENMD---RA 762

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              + + E++   PD +TY  +++   + G M  A  ++ +M   GV  +R TY  L+ G
Sbjct: 763 FALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLING 822

Query: 296 YCQQLQIDKAKELLREMADDAKIEPD 321
           +  Q  + +A  +  EM     +  D
Sbjct: 823 HVTQNNLKEAFRVHDEMLQRGFVPDD 848



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 21/266 (7%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           V+  +V+   + R   V + +   G   +N + +++L++ Y Q  ++ +  E  R +   
Sbjct: 258 VILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSK 317

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             +   + + N L+ G + +     A   + E+   G+      YT  +   AL    K+
Sbjct: 318 G-LCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVN--VYTLNIMINALCKNQKI 374

Query: 376 AN-KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            N K F   + +  V  D+V +N L+  YCR GL+EEA  +++ M   G  P V TY ++
Sbjct: 375 ENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAI 434

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            NG+    K G+ L            + +GV  D  L   + PD    + L   C R   
Sbjct: 435 INGLC---KTGKYL------------RAKGV-LDEMLKIGMSPDTATYNILLVECCRNDN 478

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
              A  I   M   G+ P+   +  +
Sbjct: 479 MMDAERIFDEMPSQGVVPDLVSFSAL 504


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 198/455 (43%), Gaps = 68/455 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           + + G+ P    ++T++  L   G  G  E++ LFD +V               +P+   
Sbjct: 135 IFKLGHQPDTATFTTLIRGLCVEGKIG--EALHLFDKMVGE-----------GFQPNGVT 181

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++    +G  +  ++L   M +   +P+V+TYN +I    +  + +  + +   ++
Sbjct: 182 YGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMI 241

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  ++T+ S++     F + +   T++  M                          
Sbjct: 242 AKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEM-------------------------- 275

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 V  K++PN +                  I+TTL+     EG V+    ++  M 
Sbjct: 276 ------VDSKIMPNVV------------------IFTTLVDALCKEGMVTIAHDVVDVMI 311

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      PD VTYT ++        MD A +V   M R G   N I+Y+ L+ GYC+  
Sbjct: 312 QR---GVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQ 368

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +IDKA  L  EM    ++ P++V+YN LI G   +     A+  F+EM A G  P  ++Y
Sbjct: 369 RIDKAMYLFEEMC-QRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTY 427

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+     +     A  +  + +    +  DI ++N++++G CR+G +E A  +   + 
Sbjct: 428 RILLDYLCKTRHLDQAMAML-KAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLS 486

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             G +P+V TY  + NG+ L     EA  L++E+ 
Sbjct: 487 SKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMN 521



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 201/436 (46%), Gaps = 45/436 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P+   + T++  L   G+     +++L   +V++           + +P+   
Sbjct: 170 MVGEGFQPNGVTYGTLIHGLCKVGNSRA--AIRLLRSMVQK-----------NCEPNVIT 216

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN +++      +  + L +F +M   G  P+V TYN +I  LC  +  KH+   ++  +
Sbjct: 217 YNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVAT-LMNEM 275

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++  I   +  F +LV A    G + IA  +V  M +  R V     E D+  Y++  +G
Sbjct: 276 VDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQ--RGV-----EPDVVTYTALMDG 328

Query: 180 -----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                + D+ D+VF+ ++              K  APN   Y+TL+ GY    R+   + 
Sbjct: 329 HCLRSEMDEADKVFDTMVR-------------KGCAPNVISYSTLINGYCKIQRIDKAMY 375

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M ++E     P+ VTY T++  L   G +  A  +  EM   G   + +TY ILL 
Sbjct: 376 LFEEMCQRE---LVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLD 432

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C+   +D+A  +L+ + + + + PD+ SYNI+IDG   + +   A   F+ + ++G+ 
Sbjct: 433 YLCKTRHLDQAMAMLKAI-EGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLH 491

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   +YT ++    L      A K+F EM  D     D   +N++  G+ R      A +
Sbjct: 492 PDVWTYTIMINGLCLQGLLAEATKLFREMNTDG-CSPDDCTYNLITRGFLRNNETLSAIQ 550

Query: 415 IIERMKENGFYPNVAT 430
           +++ M   GF  + +T
Sbjct: 551 LLQEMLGRGFSADAST 566



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/496 (23%), Positives = 192/496 (38%), Gaps = 104/496 (20%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +L + AN+      L L  QM   G   DV T  ++I      +R      V
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +I ++G      TF +L+                       R +C             
Sbjct: 132 LAKIFKLGHQPDTATFTTLI-----------------------RGLCV------------ 156

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K++              + F PN   Y TL+ G    G     +R+
Sbjct: 157 --EGKIGEALHLFDKMVG-------------EGFQPNGVTYGTLIHGLCKVGNSRAAIRL 201

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L +M ++      P+ +TY T++  L K   ++ A  + +EM   G+  N  TYN ++ G
Sbjct: 202 LRSMVQKN---CEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHG 258

Query: 296 YCQQLQIDKAKELLREMAD--------------DA--------------------KIEPD 321
            C+  +      L+ EM D              DA                     +EPD
Sbjct: 259 LCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPD 318

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           VV+Y  L+DG  L  +   A   F+ M  +G AP  ISY+TL+  +    +   A  +F+
Sbjct: 319 VVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFE 378

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           EM +   V  +IV +N L+ G C +G + +A  +   M  +G  P++ TY  L + +   
Sbjct: 379 EMCQRELVP-NIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKT 437

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
           R   +A+ + K I        EG N        L PD +  + + D   R      A ++
Sbjct: 438 RHLDQAMAMLKAI--------EGSN--------LAPDIQSYNIVIDGMCRVGELEAAGDL 481

Query: 502 VACMEEHGIPPNKTKY 517
            + +   G+ P+   Y
Sbjct: 482 FSSLSSKGLHPDVWTY 497


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 214/512 (41%), Gaps = 73/512 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R+G LP VK  + ++  L    D+  +   K    V   + +F         KP    
Sbjct: 171 MIRNGLLPDVKNCNRILRVLR---DENLLSKAK---NVYGMMEQFG-------IKPTVVT 217

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L++    G+  + L+L  +M E G  P+ +TYNV++   ++         ++E +L
Sbjct: 218 YNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML 277

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIREL 168
             G+ +   T+  L+  +   G    A  +V+ M   R              +CK ++  
Sbjct: 278 NSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVT 337

Query: 169 DLE-DYSSENEGDDDDDDEVFEKLLPNSINPS--SEPPLL-----PKTFAPNSRIYTTLM 220
            +   +S   +     D   F  LL         SE  LL      +   P    Y TL+
Sbjct: 338 GVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLI 397

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM--- 277
            G    G +   +R+    +   D    PD  TYT +V+   K G +  AR    EM   
Sbjct: 398 HGLCMWGYLDAALRL---KKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSK 454

Query: 278 ----------TRI----------------------GVPANRITYNILLKGYCQQLQIDKA 305
                     TRI                      G P + ITYN+ +   CQQ   ++A
Sbjct: 455 GLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEA 514

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +LL  M  D  I PD V+Y  +I+GF+       A   FNEM ++G+AP+ ++YT L+ 
Sbjct: 515 CDLLENMVSDGLI-PDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIH 573

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           A A      LA   F +ML +  V  +++ +N ++ G C    ++EA +  + M+E G  
Sbjct: 574 AHAAKQMLDLAFMYFSKML-EKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGIL 632

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER 457
           PN  +Y  L N         EAL L++E+ +R
Sbjct: 633 PNKFSYTILINESCNMGYWEEALRLYREMLDR 664



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 34/332 (10%)

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           VF+K++ N +              P+ +    +++   +E  +S    + G M   E   
Sbjct: 167 VFDKMIRNGL-------------LPDVKNCNRILRVLRDENLLSKAKNVYGMM---EQFG 210

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P  VTY T++ +  K G +D+A ++L+EM   G   N +TYN+L+ G  ++ ++++AK
Sbjct: 211 IKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAK 270

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            L+ EM +   +     +YN LI+GF        A     EM  R   PT  +Y TLM  
Sbjct: 271 GLIEEMLNSG-LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
                Q       F +ML+  +   DIV++N L+ GYCR G + EA  + + +K     P
Sbjct: 330 LCKWVQVTGVRLRFSDMLKS-KFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVP 388

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
            V TY +L +G          L +W  +     +KKE  +        L PD      L 
Sbjct: 389 TVITYNTLIHG----------LCMWGYLDAALRLKKEMTDQG------LFPDIFTYTILV 432

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           + C +  +   A      M   G+ P++  Y 
Sbjct: 433 NGCFKLGYVSMARGFFNEMLSKGLKPDRFAYN 464



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 74/377 (19%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    Y T++  Y  EGRV   + +L  M   ++   +P+ VTY  +V+ L K G +++A
Sbjct: 213 PTVVTYNTMLDSYCKEGRVDQALELLSEM---QERGCYPNDVTYNVLVNGLSKKGELEQA 269

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           + ++ EM   G+  +  TYN L+ G+CQ+    +A +L+ EM +     P + +YN L+ 
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAF-PTLSTYNTLMY 328

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRV 389
           G        G    F++M      P  +S+ +L+  +  +     A  +FDE+  RD  +
Sbjct: 329 GLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRD--L 386

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG------ISLAR- 442
              ++ +N L+ G C  G ++ A R+ + M + G +P++ TY  L NG      +S+AR 
Sbjct: 387 VPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARG 446

Query: 443 ----------KP----------GE---------------------------------ALL 449
                     KP          GE                                 AL 
Sbjct: 447 FFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALC 506

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
                +E C++ +   N  SD    L PD     ++ +  V+    RKA E+   M   G
Sbjct: 507 QQGNFEEACDLLE---NMVSD---GLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKG 560

Query: 510 IPPNKTKYKKIYVEMHS 526
           + P+   Y  + +  H+
Sbjct: 561 VAPSVVTY-TVLIHAHA 576



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 177/392 (45%), Gaps = 29/392 (7%)

Query: 37  VVVKRVR-KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
           V V  VR +FSD  + S   PD  ++N++L      G   +   LFD++      P V+T
Sbjct: 334 VQVTGVRLRFSDM-LKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVIT 392

Query: 96  YNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           YN +I  LC        L    E + + G+   + T+  LV      G + +A      M
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKE-MTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEM 451

Query: 155 -REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
             +G +         D   Y++   G+         K+   S+  S +  +L   F P+ 
Sbjct: 452 LSKGLKP--------DRFAYNTRIVGE--------MKIADTSVAFSMQEEMLAAGFPPDV 495

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y   +     +G   +   +L  M     +   PDHVTYT++++  VK G + +AR+V
Sbjct: 496 ITYNVFVHALCQQGNFEEACDLLENMV---SDGLIPDHVTYTSIINGFVKNGHLRKAREV 552

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM   GV  + +TY +L+  +  +  +D A     +M + + +  +V++YN +I+G  
Sbjct: 553 FNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKS-VPANVITYNAIINGLC 611

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           +      A  +F+EM  +GI P K SYT L+         + A +++ EML D +++ D 
Sbjct: 612 MTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREML-DRKIQPDS 670

Query: 394 VAWNMLVEGYCR---MGLVEEAKRIIERMKEN 422
              ++ ++   R   +  V+  + +I+ +++N
Sbjct: 671 FTHSVFLKNLHRDYQVHAVQCVESLIQNVEDN 702



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
           +LI      L  F++M   G+ P   +   +++     +    A  V+  M+    +K  
Sbjct: 156 VLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYG-MMEQFGIKPT 214

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
           +V +N +++ YC+ G V++A  ++  M+E G YPN  TY  L NG+S   K GE
Sbjct: 215 VVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLS---KKGE 265


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 127/212 (59%), Gaps = 5/212 (2%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID---KA 305
           P+ +T+ TV++ L K G +++A  V+ +M   G   N +TYN L+ GYC+  ++    KA
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             +L+EM ++ K+ P+ V++N+LIDGF   ++ + AL  F EM+++G+ PT ++Y +L+ 
Sbjct: 288 DAILKEMVEN-KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN 346

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                 +   A  + DEML    +K +++ +N L+ GYC+  L+EEA+ + + + + G  
Sbjct: 347 GLCNEGKLNEAKVLLDEML-SSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT 405

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER 457
           PNV T+ +L +G     K  EA LL K + E+
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEK 437



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 179/380 (47%), Gaps = 25/380 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLL 112
           P+   +N V+N    +GK  K   + D M  +G  P+V+TYN +I   C   R  + +  
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLE 171
             +L+ ++E  ++    TF  L+  +    +L  A  + + M+ +G +        L   
Sbjct: 288 DAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLV-- 345

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                NEG  ++   + +++L +++              PN   Y  L+ GY  +  + +
Sbjct: 346 -NGLCNEGKLNEAKVLLDEMLSSNL-------------KPNVITYNALINGYCKKKLLEE 391

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +   + +Q      P+ +T+ T++    K G M+ A  +   M   G   N  TYN 
Sbjct: 392 ARELFDNIGKQ---GLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNC 448

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G+C++ ++++ K LL EM     ++ D V+YNILI  +    +   A    +EM  +
Sbjct: 449 LIVGFCREGKMEEVKNLLNEMQCRG-VKADTVTYNILISAWCEKKEPKKAARLIDEMLDK 507

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P+ ++Y  L+  + +    + A  +  +M ++ R   ++V +N+L++GYCR G +E+
Sbjct: 508 GLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRW-ANVVTYNVLIQGYCRKGKLED 566

Query: 412 AKRIIERMKENGFYPNVATY 431
           A  ++  M E G  PN  TY
Sbjct: 567 ANGLLNEMLEKGLIPNRTTY 586



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 156/356 (43%), Gaps = 33/356 (9%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F PN   Y TL+ GY   GRV    +    ++   +N   P+ VT+  ++    K  ++ 
Sbjct: 261 FWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLS 320

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +V  EM   G+    +TYN L+ G C + ++++AK LL EM   + ++P+V++YN L
Sbjct: 321 AALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEML-SSNLKPNVITYNAL 379

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA---FALSSQPKLANKVFDEMLR 385
           I+G+        A   F+ +  +G+ P  I++ TL+     F    +  L  KV  E   
Sbjct: 380 INGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGF 439

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
            P        +N L+ G+CR G +EE K ++  M+  G   +  TY  L +     ++P 
Sbjct: 440 LPNAS----TYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPK 495

Query: 446 EALLLWKEIKERC--------EVKKEGVNADSDLPPPLKPDEEL-----------LDALA 486
           +A  L  E+ ++          +   G   + +L   L   +++            + L 
Sbjct: 496 KAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLI 555

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK------HASQ 536
               R      A  ++  M E G+ PN+T Y+ I  EM  + F         HASQ
Sbjct: 556 QGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDIEGHLYHASQ 611



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 120/300 (40%), Gaps = 47/300 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V  ++++V+ L   G              +   +   D  + S+ KP+   
Sbjct: 329 MQSQGLKPTVVTYNSLVNGLCNEGK-------------LNEAKVLLDEMLSSNLKPNVIT 375

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N        ++  +LFD + + G  P+V+T+N ++    +  +      + + +L
Sbjct: 376 YNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVML 435

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G     +T+  L+  +   G +E  + ++  M+      C+ ++              
Sbjct: 436 EKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQ------CRGVKA------------- 476

Query: 181 DDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               D V   +L ++     EP         +L K   P+   Y  L+ GY  EG +   
Sbjct: 477 ----DTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAA 532

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +    ++ E      + VTY  ++    + G ++ A  +L EM   G+  NR TY I+
Sbjct: 533 LNL---RKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 14/142 (9%)

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           V+ EM+R  ++  +++ +N ++ G C++G + +A  +++ MK  GF+PNV TY +L +G 
Sbjct: 217 VYKEMIRR-KISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGY 275

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
               + G+       +KE  E K             + P+    + L D   +      A
Sbjct: 276 CKMGRVGKMYKADAILKEMVENK-------------VSPNSVTFNVLIDGFCKDENLSAA 322

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
           L++   M+  G+ P    Y  +
Sbjct: 323 LKVFEEMQSQGLKPTVVTYNSL 344


>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
          Length = 967

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/477 (22%), Positives = 207/477 (43%), Gaps = 71/477 (14%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLL 112
           ++PD   YN +L+AC N G   +  QL ++M +  + + D +TYN +IK C R  R +  
Sbjct: 369 NQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEA 428

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           + + E + ++GI     +F SL+ + V    + +A    + MR+                
Sbjct: 429 ISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRK---------------- 472

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY-MNEGRVSD 231
                                       +  + P  F      Y+ L+ G   N     +
Sbjct: 473 ----------------------------QYGIFPDNFT-----YSILVNGIKTNHSNRDE 499

Query: 232 TVRMLGAMRR-QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
            +R +  + + QE     PD + Y +++ A VK   + +  Q+  EM    +  + +TY 
Sbjct: 500 LLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQLFKEMKNKSIEPSSVTYG 559

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           IL+K Y +   ++ A  +  EM    KI  + V+Y  L+D  +  D    AL F  +M++
Sbjct: 560 ILIKAYGKMNDLNGAFRMFEEMKQ-KKIPINDVTYGCLVDACVRNDRLDQALQFIEQMKS 618

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + +    + YTT++K F   +Q + A K F  M ++ R   +++ +N L++G  + GL+ 
Sbjct: 619 QNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQRTYPNLITYNSLLDGLVKNGLMN 678

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A ++ + + E+   P++ T+ +L  G                   R  +K+      + 
Sbjct: 679 QADKLFQELVESTIKPDLITFSTLLKGHC----------------RRGNMKRLNETVQTM 722

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           L   + PDE LL  + + C+    +   ++I     +H IP + T+   I + +HS+
Sbjct: 723 LHYQINPDESLLQLILESCLNQQQYHNGVQIYDQF-QHQIPQS-TQLLLIIIRLHSQ 777



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 151/327 (46%), Gaps = 32/327 (9%)

Query: 246 ASHPDHVTYTTVVSALVKAGSMD--RARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           ++ PD+ TYTT+++ L  + +MD   A Q+  E  +   P ++I YN LL        ++
Sbjct: 332 STKPDNFTYTTLINGLKNSDNMDLRLAFQLFEEYKQYNQP-DQIIYNCLLDACINAGDLN 390

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +  +LL EM     I+ D ++YN LI G         A++ F EM+  GI P +IS+ +L
Sbjct: 391 RGFQLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSL 450

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG----YCRMGLVEEAKRIIERM 419
           + +    ++  +A + F+EM +   +  D   +++LV G    +     +  A  ++E++
Sbjct: 451 LDSCVKCNKMNVAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQI 510

Query: 420 KENG-FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD---------S 469
           +E G F P+   Y SL +      +  + + L+KE+K +  ++   V            +
Sbjct: 511 QETGQFKPDEILYNSLIDACVKFNEIQKGMQLFKEMKNK-SIEPSSVTYGILIKAYGKMN 569

Query: 470 DLPPPLKPDEEL-----------LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           DL    +  EE+              L D CVR     +AL+ +  M+   +P N   Y 
Sbjct: 570 DLNGAFRMFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIEQMKSQNLPINTVLYT 629

Query: 519 KI---YVEMHSRMFTSKHASQARQDRR 542
            I   + +++      K+ S  +Q++R
Sbjct: 630 TIIKGFCKLNQTEEAMKYFSLMKQNQR 656



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 132/299 (44%), Gaps = 23/299 (7%)

Query: 235 MLGAMRRQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +L  MR   DNA   P  VT  T++    K    D+A +    +       +  TY  L+
Sbjct: 288 LLTFMR---DNAKIQPTIVTINTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTYTTLI 344

Query: 294 KGYCQQLQID--KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-A 350
            G      +D   A +L  E       +PD + YN L+D  I   D        NEM+ +
Sbjct: 345 NGLKNSDNMDLRLAFQLFEEYKQYN--QPDQIIYNCLLDACINAGDLNRGFQLLNEMKQS 402

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + I   +I+Y TL+K      +   A  +F+EM +   +K + +++N L++   +   + 
Sbjct: 403 QSIQLDEITYNTLIKGCGRKKRLNEAISLFEEM-KQIGIKPNRISFNSLLDSCVKCNKMN 461

Query: 411 EAKRIIERM-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            A R  E M K+ G +P+  TY  L NGI       + LL  + I    ++++ G     
Sbjct: 462 VAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHSNRDELL--RAITLLEQIQETG----- 514

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
                 KPDE L ++L D CV+    +K +++   M+   I P+   Y  I ++ + +M
Sbjct: 515 ----QFKPDEILYNSLIDACVKFNEIQKGMQLFKEMKNKSIEPSSVTY-GILIKAYGKM 568


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 221/497 (44%), Gaps = 62/497 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RS   P + +++ ++S LA          +K +  V     +      +S    D   
Sbjct: 60  MMRSTPTPSLSSFNHLLSGLA---------KIKHYSQVFSLYNQMR----LSGLSSDRCT 106

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N +LN   N+ + ++    F  +   G  P+++TYN +IK      R      +  R+ 
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDV-CK---IIRELDLEDYS 174
           ++G T  + T+ +L+    G G++ IA  + Q M     R ++ CK   I   + ++   
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G +D+  ++FE++    + P+    +L +   P+   +  L+     EG+V +  +
Sbjct: 227 KV--GREDEAKQLFEEMKTQGMIPNE---MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKK 281

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +LG M    ++   PD VTY +++      G ++ AR++   M   G   + I+YN+L+ 
Sbjct: 282 LLGVMI---ESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLIN 338

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GY + L++++A +L  EM    K  P+V++Y+ L+ G  L      A   F+ M+A GIA
Sbjct: 339 GYSKTLKVEEAMKLYNEMLLVGK-RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIA 397

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM--------------LRDPRVKV--------- 391
               +Y   +     +     A K+F E+              L D   K          
Sbjct: 398 ENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWEL 457

Query: 392 -----------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                      ++V + +++ G+CR G V++A  +I++M+ NG  P++ TY +L  G   
Sbjct: 458 FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 517

Query: 441 ARKPGEALLLWKEIKER 457
           + K  E + L   + ++
Sbjct: 518 SNKLEEVVQLLHRMAQK 534



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 201/480 (41%), Gaps = 83/480 (17%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   P  +++N +L+  A +    +   L++QM   G   D  T N+++      +R   
Sbjct: 63  STPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLRE 122

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
                  IL  G +  + T+ +L+        L +   I +A R   R            
Sbjct: 123 GFAAFAGILRRGYSPNIVTYNTLIKG------LCMEHRISEATRLFLR------------ 164

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                            +KL                   P+   Y TL+KG    G ++ 
Sbjct: 165 ----------------MQKL----------------GCTPDVVTYGTLIKGLCGTGNINI 192

Query: 232 TVR----MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR- 286
            ++    ML  + R E N   P+ +TY  +V  L K G  D A+Q+  EM   G+  N  
Sbjct: 193 ALKLHQEMLNDISRYEINCK-PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEM 251

Query: 287 ---------ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
                    +T+N+L+   C++ ++ +AK+LL  M +   I PD+V+YN LI+GF ++ D
Sbjct: 252 LDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESG-IVPDLVTYNSLIEGFCMVGD 310

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   F  M ++G  P  ISY  L+  ++ + + + A K+++EML   + + +++ ++
Sbjct: 311 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK-RPNVITYD 369

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            L++G    G V++AK++   MK +G   N  TYG   +G+       EA+ L+ E+K  
Sbjct: 370 SLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSS 429

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                             K + E L+ L D   +A     A E+   +   G  PN   Y
Sbjct: 430 ----------------NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTY 473



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 36/236 (15%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P + S+N L+ G   I   +   + +N+MR  G++  + +   L+      ++ +     
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F  +LR      +IV +N L++G C    + EA R+  RM++ G  P+V TYG+L  G+ 
Sbjct: 127 FAGILRRG-YSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLC 185

Query: 440 LARKPGEALLLWKEIKE-------RC----------------------------EVKKEG 464
                  AL L +E+          C                            E+K +G
Sbjct: 186 GTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQG 245

Query: 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +  +  L   L+PD    + L D   +     +A +++  M E GI P+   Y  +
Sbjct: 246 MIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSL 301


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/489 (23%), Positives = 217/489 (44%), Gaps = 36/489 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            + D  +YNAVL       +     +L D+M      P+++T+N +I    R      + 
Sbjct: 212 CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDV 161
            VL ++ E G T  +  + +++      G LE+A  I+  M                + +
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C   R  + E+  SE    D   D+V   +L +    +            +L     P+ 
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT++ G+  EG + + V +L +M         P+ V+YT V+  L  AG    A ++
Sbjct: 392 ITYTTVINGFCKEGLIDEAVMLLKSM---SSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           +++M + G P N +T+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG  
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLG 507

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  AL   N M  +GI+P  I Y+++  A +   +     ++FD  ++D  ++ D 
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN-IKDTTIRSDA 566

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N ++   C+    + A      M  NG  PN +TY  L  G++      EA  L  E
Sbjct: 567 VLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSE 626

Query: 454 IKERCEVKKE-----GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
           +  R  ++K      G++  +      K +E L  A+ +       ++  +EI+  +E  
Sbjct: 627 LCSRGALRKHLMRHFGISNCTQENGKQKCEENLTSAVDN------NYKLPIEILGFLEIQ 680

Query: 509 GIPPNKTKY 517
            + P + ++
Sbjct: 681 NLRPGEKQF 689



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/530 (21%), Positives = 202/530 (38%), Gaps = 135/530 (25%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           DT   N VLNA    G   + + L  ++  FG + D+++YN ++K    A R   +  ++
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELM 239

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++ +     + TF +L+      G  E    ++  M E                    
Sbjct: 240 DEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE-------------------- 279

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                             P+ R+Y T++ G   EG +     +L
Sbjct: 280 ------------------------------HGCTPDIRMYATIIDGICKEGHLEVANEIL 309

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
               R       P+ V Y TV+  L  A     A ++L+EM +   P + +T+NIL+  +
Sbjct: 310 ---NRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGI 353
           CQ   +D+  ELL +M     + PDV++Y  +I+GF    LID+   A+     M + G 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCM-PDVITYTTVINGFCKEGLIDE---AVMLLKSMSSCGC 422

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  +SYT ++K    + +   A ++  +M++      + V +N L+   C+ GLVE+A 
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            ++++M  NG  P++ +Y ++ +G+                                   
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLG---------------------------------- 507

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS------- 526
                            +A    +ALE++  M   GI PN   Y  I   +         
Sbjct: 508 -----------------KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKV 550

Query: 527 -RMFTSKHASQARQD------------RRRERKRAAEAFKFWLG---LPN 560
            +MF +   +  R D            +R E  RA + F + +    +PN
Sbjct: 551 IQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 600



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 135/310 (43%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  +  +++G    GR++D + +L  M  +      P    Y  ++ A  ++G    +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFK---GCAPIPPMYHVILEAACRSGGFRNS 165

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL  M   G   +    N++L   C+Q  +D+A  LLR++A     E D+VSYN ++ 
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLK 224

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G  +           +EM     AP  +++ TL+     +   +  ++V  +M  +    
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQM-SEHGCT 283

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DI  +  +++G C+ G +E A  I+ RM   G  PNV  Y ++  G+  A +       
Sbjct: 284 PDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER------- 336

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           WKE +   E+  E    D  L      D+   + L D   +     + +E++  M  HG 
Sbjct: 337 WKEAE---ELLSEMFQKDCPL------DDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 511 PPNKTKYKKI 520
            P+   Y  +
Sbjct: 388 MPDVITYTTV 397



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 167/388 (43%), Gaps = 28/388 (7%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS---------K 55
           GYL     +  V   LA   + G    ++++  ++  + K    ++ ++          K
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN VL    +  + K+  +L  +M +     D +T+N+++    +      ++ +
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE++L  G    + T+ +++  +   G ++ A  ++++M         +   + L+   S
Sbjct: 379 LEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D +E+  +++     P+      P TF        TL+     +G V   + +
Sbjct: 439 --AGRWVDAEELMSQMIQQGCPPN------PVTF-------NTLINFLCKKGLVEQAIEL 483

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M     N   PD ++Y+TV+  L KAG  + A ++L  M   G+  N I Y+ +   
Sbjct: 484 LKQMLV---NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACA 540

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             ++ +++K  ++   +  D  I  D V YN +I       ++  A+ FF  M + G  P
Sbjct: 541 LSREGRVNKVIQMFDNI-KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEM 383
            + +YT L+K  A     K A ++  E+
Sbjct: 600 NESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 21/234 (8%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           + YN ++ GYC+  Q+  A+     +A    + P+  ++  ++ G       A AL   +
Sbjct: 80  VAYNAMVAGYCRAGQLAAAR----RLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  +G AP    Y  +++A   S   + + +V + M       +D    N+++   C  
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM-HAKGCTLDTGNCNLVLNAICEQ 194

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G V+EA  ++ ++   G   ++ +Y ++  G+ +A++       W +++   E+  E V 
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKR-------WGDVE---ELMDEMVR 244

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            D        P+    + L     R   F +  E++A M EHG  P+   Y  I
Sbjct: 245 VDC------APNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATI 292


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 118/489 (24%), Positives = 196/489 (40%), Gaps = 90/489 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A +  +L +   +      L L  QM  FG  P++ T N++I       R      V
Sbjct: 57  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 116

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G    + TF +L+                       R +C             
Sbjct: 117 LAKILKLGHQPNIATFNTLI-----------------------RGLCV------------ 141

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K++              + F PN   Y TL+ G    G  S  +R+
Sbjct: 142 --EGKIGEVLHLFDKMIG-------------EGFQPNVVTYGTLINGLCKVGSTSAAIRL 186

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R  E     PD V YT+++ +L K   + +A  + +EM   G+  +  TYN L+  
Sbjct: 187 L---RSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHA 243

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL EM  ++KI P+VV ++ ++D          A    + M  RG+ P
Sbjct: 244 LCNLCEWKHVTALLNEMV-NSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEP 302

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y  LM    L S+   A KVFD M+       D+V+++ L+ GYC++  +E+A  +
Sbjct: 303 NVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAP-DVVSYSTLINGYCKIQRIEKAMYL 361

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CE 459
            E M      PN  TY +L +G+    +  +A+ L+ E+  R                C+
Sbjct: 362 FEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCK 421

Query: 460 VKK-----------EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            ++           EG N D        PD ++   + D   RA     A ++ + +   
Sbjct: 422 NRRLDEAIALLKAIEGSNMD--------PDIQIYTIVIDGMCRAGELEAARDLFSNLSSK 473

Query: 509 GIPPNKTKY 517
           G+ PN   Y
Sbjct: 474 GLHPNVWTY 482



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 206/472 (43%), Gaps = 64/472 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P++  ++T++  L   G  G  E + LFD ++               +P+   
Sbjct: 120 ILKLGHQPNIATFNTLIRGLCVEGKIG--EVLHLFDKMIGE-----------GFQPNVVT 166

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +PDV+ Y  +I    +  +      +   ++
Sbjct: 167 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMI 226

Query: 121 EMGITLCMTTFQSLVAAYVGFG-------------------DLEIAETIVQAM-REGR-- 158
             GI+  + T+ SL+ A                        ++ I  T+V A+ +EG+  
Sbjct: 227 HQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVM 286

Query: 159 --RDVCKIIRELDLE----DYSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPK 207
              DV  ++ +  +E     Y++  +G     + D+  +VF+              ++ K
Sbjct: 287 EAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT-------------MVCK 333

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
            FAP+   Y+TL+ GY    R+   + +   M R+E     P+ VTY+T++  L   G +
Sbjct: 334 GFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE---LIPNTVTYSTLMHGLCHVGRL 390

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             A  +  EM   G   + ++Y ILL   C+  ++D+A  LL+ + + + ++PD+  Y I
Sbjct: 391 QDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAI-EGSNMDPDIQIYTI 449

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           +IDG     +   A   F+ + ++G+ P   +YT ++           A+K+F EM R  
Sbjct: 450 VIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 509

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
               +   +N++  G+ R        ++++ M   GF  +V+T   L   +S
Sbjct: 510 Y-SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLS 560



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P +  +  L+     +   +  L+  ++M + GI P   +   L+ +F    +   A  V
Sbjct: 57  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 116

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             ++L+    + +I  +N L+ G C  G + E   + ++M   GF PNV TYG+L NG+ 
Sbjct: 117 LAKILKLGH-QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLC 175

Query: 440 LARKPGEALLLWKEIKE-RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
                  A+ L + +++  C+                 PD  +  ++ D   +     +A
Sbjct: 176 KVGSTSAAIRLLRSMEQGNCQ-----------------PDVVVYTSIIDSLCKDRQVTQA 218

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
             + + M   GI P+   Y  +
Sbjct: 219 FNLFSEMIHQGISPSIFTYNSL 240


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 182/421 (43%), Gaps = 94/421 (22%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLL 112
           P+   YN +LN     G+ K  L++ D M + G + D+ TYN+MI KLC   R++R +LL
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
              L+R+ E+ +T    ++ +L+  + G G + +A  I                      
Sbjct: 322 ---LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYI---------------------- 356

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                          F ++L  S+ PS                YT L+ GY   GR  + 
Sbjct: 357 ---------------FNQMLRQSLKPSVAT-------------YTALIDGYCRNGRTDEA 388

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            R+L  M   +     P  +TY+ +++   K   +  A  ++  +    +  NR  Y IL
Sbjct: 389 RRVLYEM---QITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTIL 445

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+CQ  ++ KAK++L+ M  D  I+PDV++Y+ LI+G   +          + M+  G
Sbjct: 446 IDGFCQLGEVSKAKQILKCMLADG-IDPDVITYSALINGMCKMGMIHETKEILSRMQKSG 504

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP------------------------- 387
           + P  + YTTL+  F  +   K A K F ++ R                           
Sbjct: 505 VLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAE 564

Query: 388 ---------RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
                    ++  D+ ++N +++ YC+ G V EA  + + M  +G+ P++ TYGSL  G+
Sbjct: 565 QFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGL 624

Query: 439 S 439
            
Sbjct: 625 C 625



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 22/290 (7%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  T   V+++L   G + +A  +L +M    +P N +TYN +L  Y ++ +   A  +L
Sbjct: 229 DVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLP-NAVTYNTILNWYVKKGRCKSALRIL 287

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M  +  IE D+ +YNI+ID    +  SA A      MR   + P + SY TL+  F  
Sbjct: 288 DDMEKNG-IEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFG 346

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             +  LA  +F++MLR   +K  +  +  L++GYCR G  +EA+R++  M+  G  P+  
Sbjct: 347 EGKINLAIYIFNQMLRQS-LKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSEL 405

Query: 430 TYGSLANGISLARKPGEALLLWKEIKER----------------C---EVKKEGVNADSD 470
           TY +L NG     K G AL L K ++ R                C   EV K        
Sbjct: 406 TYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCM 465

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L   + PD     AL +   +     +  EI++ M++ G+ PN   Y  +
Sbjct: 466 LADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTL 515



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 174/410 (42%), Gaps = 27/410 (6%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++    LG+  K  Q+   M   G  PDV+TY+ +I    +    H    +L R+ 
Sbjct: 442 YTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQ 501

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           + G+      + +LV  +   G   E  +  V   R G      +I    L  +  E   
Sbjct: 502 KSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLV-ANSVIHNALLCSFYREGMI 560

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
            + +  + +   +  S + +S               +  ++  Y   G V +   +   M
Sbjct: 561 AEAEQFKQYMSRMKISFDVAS---------------FNCIIDSYCQRGNVLEAFSVYDNM 605

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R       PD  TY +++  L + G + +A++ +  +       +  T N LL G C+ 
Sbjct: 606 VRH---GWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKH 662

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +D+A +L  +M     I PD  +Y IL+DGF        AL     M  +G+ P  I+
Sbjct: 663 GTLDEALDLCEKMVTR-NILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIA 721

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT L+       Q K A+ +F E++    +  D +A+N ++ GY + G + E +R++  M
Sbjct: 722 YTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNM 781

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            EN  YP+ A+Y  L +G     +    L L++++       KEG+  D+
Sbjct: 782 HENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDM------VKEGIKPDN 825



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 154/362 (42%), Gaps = 55/362 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAM------------------------------- 239
           PN+  Y T++  Y+ +GR    +R+L  M                               
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 240 --RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
             R +E N + PD  +Y T++      G ++ A  +  +M R  +  +  TY  L+ GYC
Sbjct: 322 LKRMREVNLT-PDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYC 380

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  + D+A+ +L EM     + P  ++Y+ L++G+        AL     +R+R I+  +
Sbjct: 381 RNGRTDEARRVLYEMQITG-VRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINR 439

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             YT L+  F    +   A ++   ML D  +  D++ ++ L+ G C+MG++ E K I+ 
Sbjct: 440 TMYTILIDGFCQLGEVSKAKQILKCMLADG-IDPDVITYSALINGMCKMGMIHETKEILS 498

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEVKKEG 464
           RM+++G  PN   Y +L      A    EAL  + +I                C   +EG
Sbjct: 499 RMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREG 558

Query: 465 VNADSDLPPPLKPDEEL-LDALADICVRAAFFRK-----ALEIVACMEEHGIPPNKTKYK 518
           + A+++         ++  D  +  C+  ++ ++     A  +   M  HG PP+   Y 
Sbjct: 559 MIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYG 618

Query: 519 KI 520
            +
Sbjct: 619 SL 620



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 210/478 (43%), Gaps = 58/478 (12%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M+R G+ P +  + +++  L   G              + + ++F    +      D   
Sbjct: 605  MVRHGWPPDICTYGSLLRGLCQGGH-------------LVQAKEFMVYLLEKACAIDEKT 651

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
             N +L      G   + L L ++M      PD  TY +++   C R      L+ +L+ +
Sbjct: 652  LNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALI-LLQMM 710

Query: 120  LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            LE G+      +  L+   V  G ++ A  + Q +      +CK     D   Y+S   G
Sbjct: 711  LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEI------ICKEGLYADCIAYNSMMNG 764

Query: 180  --DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                   +E+ E+L+ N         +      P+S  Y  LM GY+ +G++S T+ +  
Sbjct: 765  YLKGGQINEI-ERLMRN---------MHENEVYPSSASYNILMHGYIKKGQLSRTLYLYR 814

Query: 238  AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
             M ++      PD+VTY  ++  L + G ++ A + L +M   GV  + + ++IL+K + 
Sbjct: 815  DMVKE---GIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFS 871

Query: 298  QQLQIDKAKELLR------------EMADDAK---IEPDVVSYNILIDGFILIDDSAGAL 342
            ++ ++  A +L              E+ +D K   + P  V+ + ++ G         A+
Sbjct: 872  EKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAI 931

Query: 343  TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV-FDEMLRDPRVKVDIVAWNMLVE 401
              F+ +   G+ PT  ++TTLM    L  + K+ +     +++    +KVD+V +N+L+ 
Sbjct: 932  IVFSSIMRAGMVPTIATFTTLMHG--LCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLIT 989

Query: 402  GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI--SLARKPGEALLLWKEIKER 457
            G C    + +A  + E MK  G  PN+ TY +L   +  +   + GE LL  K+I++R
Sbjct: 990  GLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLL--KDIEDR 1045


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 173/400 (43%), Gaps = 57/400 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L + A +      L L  QM  FG  P++ T +++I      +R      V
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 116 LERILEMGITLCMTTFQSLV-AAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           L +IL++G      TF +L+   YV                                   
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGIYV----------------------------------- 143

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG   +   +F+K             ++ + F P+   Y TL+ G    G  S  +R
Sbjct: 144 ---EGKIGEALHLFDK-------------MIGEGFRPDVVTYGTLINGLCKVGNTSAAIR 187

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +LG+M ++      P+   Y T++ +L K   +  A  + +EM   G+  +  TYN L+ 
Sbjct: 188 LLGSMVQKN---CQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIH 244

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C   +      LL EM  D+KI PDVVS+N ++D          A    ++M  RG+ 
Sbjct: 245 ALCNLCEWKHVATLLNEMV-DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE 303

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YT LM    L S+   A KVFD M+    +  +++++N L+ GYC++  +++A  
Sbjct: 304 PNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMP-NVISYNTLINGYCKIQRIDKAMY 362

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +   M      P+  TY +L +G+    +  +A+ L+ E+
Sbjct: 363 LFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEM 402



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/471 (21%), Positives = 200/471 (42%), Gaps = 43/471 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P    ++T++  +   G  G  E++ LFD ++               +PD   
Sbjct: 122 ILKLGHQPDTATFTTLIRGIYVEGKIG--EALHLFDKMIGE-----------GFRPDVVT 168

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +P+V  YN +I    +  +      +   ++
Sbjct: 169 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMV 228

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSENE 178
             GI+  + T+ SL+ A     + +   T++  M + +   DV      +D    +   E
Sbjct: 229 TKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD----ALCKE 284

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   +  +V +K++   + P             N   YT LM G+     + + V++   
Sbjct: 285 GKVTEAHDVVDKMIQRGVEP-------------NVVTYTALMDGHCLLSEMDEAVKVFDT 331

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      P+ ++Y T+++   K   +D+A  +  EM R  +  + +TY+ L+ G C 
Sbjct: 332 MVCK---GCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCH 388

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++  A  L  EM   ++I P++V+Y IL+D        A A+     +    + P   
Sbjct: 389 VERLQDAIALFHEMVACSQI-PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQ 447

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
                +     + + + A  +F   L    ++ D+  +++++ G CR GL++EA ++   
Sbjct: 448 VNNIAIDGMCRAGELEAARDLFSN-LSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFRE 506

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           M ENG   N   Y ++  G     +   A+ L +E+  R      G +AD+
Sbjct: 507 MDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVAR------GFSADA 551



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 175/421 (41%), Gaps = 68/421 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P V  + T+++ L   G+     +++L   +V++           + +P+  A
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSA--AIRLLGSMVQK-----------NCQPNVFA 203

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN ++++     +  +   LF +M   G  PD+ TYN +I  LC     KH+   +L  +
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVAT-LLNEM 262

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSE- 176
           ++  I   + +F ++V A    G +  A  +V  M  R    +V      +D     SE 
Sbjct: 263 VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEM 322

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSE-----------------PPLLPKTFAPNSRIYTTL 219
           +E     D  V +  +PN I+ ++                    +  +   P++  Y+TL
Sbjct: 323 DEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTL 382

Query: 220 MKGYMNEGRVSDTVRMLGAM--------------------------------RRQEDNAS 247
           + G  +  R+ D + +   M                                +  E +  
Sbjct: 383 IHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNL 442

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            PD       +  + +AG ++ AR + + ++  G+  +  TY+I++ G C++  +D+A +
Sbjct: 443 DPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASK 502

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           L REM D+     +   YN +  GF+  ++++ A+    EM ARG +    + T  +K  
Sbjct: 503 LFREM-DENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKML 561

Query: 368 A 368
           +
Sbjct: 562 S 562


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 129/550 (23%), Positives = 239/550 (43%), Gaps = 61/550 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G++P   A S +V  L   G+ G       FD+V  +V+KF          P    
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSA-----FDLV-NKVKKFG-------VAPSLFV 357

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YNA++N+    GK  +   LF+ M   G  P+ +TY+++I   C R      L F L ++
Sbjct: 358 YNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF-LGKM 416

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            E+GI   +  + SL++ +   G L  A+++   M         +I    +  Y    EG
Sbjct: 417 TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK--EG 474

Query: 180 DDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYT 217
           +  +   ++ ++    I+P++                         ++     PN   Y 
Sbjct: 475 ELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYN 534

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L++G+  EG   +TVR    +    +    PD  TY  ++S L   G +  AR+ + ++
Sbjct: 535 VLIEGHCKEG---NTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDL 591

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
                  N + ++ LL GYC++ ++D A +  REM     +  D+V Y++LI G +   D
Sbjct: 592 QGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRG-VAMDLVCYSVLIYGILRQQD 650

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
               +    +M  +G+ P  + YTT++ A A +   K+A  ++D M+ +  +  ++V + 
Sbjct: 651 RRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLP-NVVTYT 709

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            L+ G C++GL+++A+ +   M  +   PN  TY    + ++      +A+ L       
Sbjct: 710 ALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH------ 763

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            +V  EG  A++     L         +   C +    ++A E++  M + GI P+   Y
Sbjct: 764 -DVLLEGFLANTVTYNIL---------IRGFC-KLGRIQEAAEVLVNMIDSGISPDCISY 812

Query: 518 KKIYVEMHSR 527
             I  E   R
Sbjct: 813 STIIYEYCRR 822



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 182/418 (43%), Gaps = 52/418 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  + A+++   +  +  +  +LF +M E+   P+ +TYNV+I+   +         +
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ ++E G+     T++ L++     G +  A   +  ++  ++ + ++     L  Y  
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCK 612

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E   DD  D               +   +L +  A +   Y+ L+ G +   R  D   +
Sbjct: 613 EGRLDDALD---------------ACREMLGRGVAMDLVCYSVLIYGIL---RQQDRRSI 654

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  +++  D    PD+V YTT++ A  KAG++  A  +   M   G   N +TY  L+ G
Sbjct: 655 IDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALING 714

Query: 296 YCQQLQIDKAKELLREM-------------------ADDAKIE--------------PDV 322
            C+   +DKA+ L REM                     +  IE               + 
Sbjct: 715 LCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANT 774

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           V+YNILI GF  +     A      M   GI+P  ISY+T++  +      K A K+++ 
Sbjct: 775 VTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWES 834

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           ML +  V  D VA+N L+ G C  G + +A  + + M   G  PN ATY SL +G  L
Sbjct: 835 ML-NRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCL 891



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 118/295 (40%), Gaps = 29/295 (9%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD   YT VV +L +     RAR+V+  M   G   +  TYN+ ++G C+  ++ +A E 
Sbjct: 213 PDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVE- 271

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM---- 364
           ++ +     +  DV +Y  L+ G   +++        NEM   G  P++ + + L+    
Sbjct: 272 IKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLR 331

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           K   + S   L NKV     +   V   +  +N L+   C+ G ++EA+ +   M   G 
Sbjct: 332 KKGNIGSAFDLVNKV-----KKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGL 386

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKE----------------RCEVKKEGVNA- 467
           +PN  TY  L +      K   AL    ++ E                 C++ K      
Sbjct: 387 FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKS 446

Query: 468 --DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             D  +   LKP+  +  +L     +      A  +   M   GI PN   +  +
Sbjct: 447 LFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 18/245 (7%)

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V+  M   G+     T + +L G  +  Q   A  L  E+     + PDV  Y  ++   
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG-LRPDVYVYTAVVRSL 225

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
             + D   A      M + G   +  +Y   ++    + +   A ++   +L    ++ D
Sbjct: 226 CELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEI-KNLLSYKGLRAD 284

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +  +  LV G C++   E  + ++  M E GF P+ A   +L +G+      G A  L  
Sbjct: 285 VGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVN 344

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                 +VKK GV           P   + +AL +   +     +A  +   M   G+ P
Sbjct: 345 ------KVKKFGV----------APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFP 388

Query: 513 NKTKY 517
           N   Y
Sbjct: 389 NDVTY 393


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 210/506 (41%), Gaps = 82/506 (16%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN V+       +  + +Q+F++M+E    PD  +Y ++I   A+A + +    + +++
Sbjct: 290 GYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL 349

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L  G+T     + SL+        L +A +                              
Sbjct: 350 LHSGVTPSTVAYTSLIHG------LCMANSF----------------------------- 374

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             DD  E+F  +      PS      P T+  N  I  +  +G + E            +
Sbjct: 375 --DDARELFADMNRRGCPPS------PVTY--NVMIDASCKRGMLEEA--------CDLI 416

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++  ++   PD VTY TV+  L K+  ++ A  +  EM R+G   NR ++N ++ G CQQ
Sbjct: 417 KKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 476

Query: 300 LQIDKAKE---------LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            +ID+A +         LL+ M DD  + PDVV+Y+ LI G   I     A     +M  
Sbjct: 477 SKIDQACQRGKLDEAFRLLKRMTDDGHV-PDVVTYSTLISGLCSIARVDDARHLLEDMVK 535

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           R   PT ++  TL+     + + K A +V D M+   +   D+V +N LV G+CR G  E
Sbjct: 536 RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ-SPDVVTYNTLVHGHCRAGQTE 594

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            A+ ++  M   G  PNV TY +L +G+  A +  EA  ++ ++K             S 
Sbjct: 595 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK------------SSG 642

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
             P L     L+         A      L++   M   GI P+   Y  +  E+     +
Sbjct: 643 CAPNLFTYTALILGFCS----AGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRS 698

Query: 531 SKHASQARQDRRRERKRA--AEAFKF 554
           ++     R+ R   R  A   E ++F
Sbjct: 699 ARALEILREGRESLRSEAWGDEVYRF 724



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 134/245 (54%), Gaps = 11/245 (4%)

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA------ 270
             L++G+ + G+V     +L AM    D    PD V+Y TV+  L KAG ++ A      
Sbjct: 216 NVLLEGFCSRGQVDKARELLRAM---PDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGD 272

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R++ +  +    P +   YNI++ G CQ  +ID+A ++  +M ++  + PD  SY ILID
Sbjct: 273 RELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKM-NERNVSPDSWSYGILID 331

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A   F ++   G+ P+ ++YT+L+    +++    A ++F +M R     
Sbjct: 332 GLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG-CP 390

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
              V +N++++  C+ G++EEA  +I++M E+G  P+V TY ++ +G+  + +  EALLL
Sbjct: 391 PSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLL 450

Query: 451 WKEIK 455
           + E++
Sbjct: 451 FNEME 455



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 152/405 (37%), Gaps = 114/405 (28%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAM-------------------RRQE-------- 243
           P   ++T++++G+ N GR  + V++   M                   +RQE        
Sbjct: 8   PAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMV 67

Query: 244 ----DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP---------------- 283
               D    PD  T+TT++  L KAG MD A  V+ EM    +P                
Sbjct: 68  QVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLR 127

Query: 284 ---------------ANRITYNILLKGYCQQLQIDKAKELLREMA--------------- 313
                          AN   YNI++   C+  ++D A EL R M+               
Sbjct: 128 GSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVL 187

Query: 314 ----DDAKI------------EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
               D  +I            EP +V+ N+L++GF        A      M     AP +
Sbjct: 188 VGLMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDE 247

Query: 358 ISYTTLMKAFALSSQPKLANKVFDE-----MLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +SY T++     + + + A ++F +               +  +N+++ G C+   ++EA
Sbjct: 248 VSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEA 307

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
            ++ E+M E    P+  +YG L +G++ A K  +A  L++++              S + 
Sbjct: 308 VQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLH------------SGVT 355

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           P       L+  L      A  F  A E+ A M   G PP+   Y
Sbjct: 356 PSTVAYTSLIHGLC----MANSFDDARELFADMNRRGCPPSPVTY 396



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 108/470 (22%), Positives = 186/470 (39%), Gaps = 60/470 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRL--AASGDDG---------------PVESVKLFDVVVKRVR 43
           +L SG  P   A+++++  L  A S DD                PV    + D   KR  
Sbjct: 349 LLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGM 408

Query: 44  KFSDPDIVS-----DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN- 97
                D++         PD   YN V++      + ++ L LF++M   G  P+  ++N 
Sbjct: 409 LEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNT 468

Query: 98  VMIKLCARA------SRKHL--LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           +++ LC ++       R  L     +L+R+ + G    + T+ +L++       ++ A  
Sbjct: 469 IILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 528

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           +++ M   +R     +   +   +     G   +  EV + ++ +  +P           
Sbjct: 529 LLEDMV--KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP----------- 575

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
             +   Y TL+ G+   G+      +L  M  +      P+ VTYT +VS L KA  +  
Sbjct: 576 --DVVTYNTLVHGHCRAGQTERARELLSDMVAR---GLAPNVVTYTALVSGLCKANRLPE 630

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  V A+M   G   N  TY  L+ G+C   Q+D   +L  EM   A I PD V Y  L 
Sbjct: 631 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV-CAGISPDHVVYGTLA 689

Query: 330 DGFILIDDSAGALTFFNEMRA--RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
                   SA AL    E R   R  A     Y   +     + + ++A     +M+R  
Sbjct: 690 AELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGG 749

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           ++       + LV G C+ G   EA+ ++E + +         YG  A G
Sbjct: 750 QLPAPERCAS-LVAGLCKSGQGGEARAVLEEIMD-------LAYGGKARG 791



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +GI P  + +T++++ +    +   A K+F  M        D+  +N+L++   +  
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDV--YNVLIDSLSKRQ 58

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             E  K++++ M + G +P+  T+ ++  G+  A K  EA L+  E++ R
Sbjct: 59  ETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSR 108


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 132/555 (23%), Positives = 229/555 (41%), Gaps = 69/555 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVK-----------------LFDVVVKRVR 43
           M   G +P++  +S V++ L  +GD      +K                 L D   ++ R
Sbjct: 258 MEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKR 317

Query: 44  KFSDPDIVSDS-----KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
                 ++ +      KPD  AY A++N            Q+ ++M     K +  TY  
Sbjct: 318 STEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYA 377

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMRE- 156
           +I    +         +   +  MGI   + T+  L+  Y    ++E A E +++  +E 
Sbjct: 378 LIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKEN 437

Query: 157 --GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
                 +C  I           + GD    +E+F++++   +              PN  
Sbjct: 438 LTANAYMCGAIVN------GLCHCGDLTRANELFQEMISWGLK-------------PNIV 478

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           IYTT++KG + EGR  + +++LG M+   D    PD   Y TV+    KAG M+  +  L
Sbjct: 479 IYTTIVKGLVKEGRFEEAIKILGVMK---DQGLSPDVFCYNTVIIGFCKAGKMEEGKSYL 535

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM   G+  N  TY   + GYC+  ++  A+    EM D   I P+ V    LIDG+  
Sbjct: 536 VEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSG-IAPNDVICTDLIDGYCK 594

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
             ++  A   F  M  +G+ P   +++ L+   + + + + A  VF E+L D  +  D+ 
Sbjct: 595 DGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELL-DKGLVPDVF 653

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +  L+   C+ G ++ A  + + M + G  PN+ TY +L NG+    +  +A  L+  I
Sbjct: 654 TYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGI 713

Query: 455 KERCEVKKE--------GVNADSDLPPPLK-----------PDEELLDALADICVRAAFF 495
            E+   +          G    ++L    +           PD  +  AL D C +A   
Sbjct: 714 PEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNT 773

Query: 496 RKALEIVACMEEHGI 510
            KAL +   M E GI
Sbjct: 774 EKALSLFLGMVEEGI 788



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/487 (22%), Positives = 214/487 (43%), Gaps = 50/487 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLV 113
           KP+   Y  ++      G+ ++ +++   M + G  PDV  YN V+I  C     +    
Sbjct: 474 KPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKS 533

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE-TIVQAMREGRRDVCKIIRELDLED 172
           +++E I + G+   + T+ + +  Y   G+++ AE + ++ +  G      I  +L ++ 
Sbjct: 534 YLVEMIAK-GLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDL-IDG 591

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSE----------------------PPLLPKTFA 210
           Y  +  G+       F  +L   + P  +                        LL K   
Sbjct: 592 YCKD--GNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLV 649

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   YT+L+     EG +     +   M ++  N   P+ VTY  +++ L K G + +A
Sbjct: 650 PDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGIN---PNIVTYNALINGLCKLGEIAKA 706

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R++   +   G+  N +TY+ ++ GYC+   + +A +L   M     + PD   Y  LID
Sbjct: 707 RELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGM-KLVGVPPDSFVYCALID 765

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     ++  AL+ F  M   GIA T  ++  L+  F    +   A ++ ++M+ D  + 
Sbjct: 766 GCCKAGNTEKALSLFLGMVEEGIASTP-AFNALIDGFFKLGKLIEAYQLVEDMV-DNHIT 823

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            + V + +L+E +C +G ++EA+++   M++    PNV TY SL +G +   +  E   L
Sbjct: 824 PNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSL 883

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           + E+  R                 +KPD+     + D  ++   + KAL++V  M   G+
Sbjct: 884 FDEMVAR----------------GIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGV 927

Query: 511 PPNKTKY 517
              K  Y
Sbjct: 928 NVCKNLY 934



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 29/307 (9%)

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           MLGA+         PD  TYT +++A  + G ++  + VL +M   G   N +TY++++ 
Sbjct: 224 MLGAIV--------PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIA 275

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+   +D+A EL R MA+   + PD   Y  LIDGF     S    +  +EM   G+ 
Sbjct: 276 GLCRAGDVDEALELKRSMANKGLL-PDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLK 334

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YT L+  F   S    A +V +EM    ++K++   +  L+ G C++G +E+A+ 
Sbjct: 335 PDHVAYTALINGFVKQSDIGGAFQVKEEMFA-RKIKLNTFTYYALIHGLCKIGDLEKAED 393

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------CEVKKEGVN 466
           +   M   G  P++ TY  L  G    +   +A  L  EIK+         C     G+ 
Sbjct: 394 LFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLC 453

Query: 467 ADSDLPPP-----------LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
              DL              LKP+  +   +    V+   F +A++I+  M++ G+ P+  
Sbjct: 454 HCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVF 513

Query: 516 KYKKIYV 522
            Y  + +
Sbjct: 514 CYNTVII 520



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 177/395 (44%), Gaps = 25/395 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           PD   ++ +++  +  GK ++ + +F ++ + G  PDV TY  +I  LC     K    F
Sbjct: 615 PDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKA--AF 672

Query: 115 VL-ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            L + + + GI   + T+ +L+      G++  A  +   + E       +     +  Y
Sbjct: 673 ELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGY 732

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                    +  E F+  L + +     PP        +S +Y  L+ G    G     +
Sbjct: 733 CK-----SANLTEAFQ--LFHGMKLVGVPP--------DSFVYCALIDGCCKAGNTEKAL 777

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +E  AS P    +  ++    K G +  A Q++ +M    +  N +TY IL+
Sbjct: 778 SLFLGMV-EEGIASTP---AFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILI 833

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           + +C    I +A++L  EM     + P+V++Y  L+ G+  I   +   + F+EM ARGI
Sbjct: 834 EYHCTVGNIKEAEQLFMEM-QKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGI 892

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++++ ++ A         A K+ D+ML +  V V    + +L++  C+   + E  
Sbjct: 893 KPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEG-VNVCKNLYTILIDALCKHNNLSEVL 951

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           ++++ +++ G   ++AT G+L      A +  EAL
Sbjct: 952 KVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEAL 986



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 181/424 (42%), Gaps = 44/424 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G LP V+  S ++  L+ +G     E++ +F  ++       D  +V    PD   
Sbjct: 608 MLDQGVLPDVQTHSVLIHGLSKNGK--LQEAMGVFSELL-------DKGLV----PDVFT 654

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++     G  K   +L D M + G  P+++TYN +I    +         + + I 
Sbjct: 655 YTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIP 714

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-----EGRRDVCKIIRELDLEDYSS 175
           E G+     T+ +++A Y    +L  A  +   M+           C +I          
Sbjct: 715 EKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALID-------GC 767

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G+ +    +F  ++   I  +S P             +  L+ G+   G++ +  ++
Sbjct: 768 CKAGNTEKALSLFLGMVEEGI--ASTPA------------FNALIDGFFKLGKLIEAYQL 813

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M    DN   P+HVTYT ++      G++  A Q+  EM +  V  N +TY  LL G
Sbjct: 814 VEDMV---DNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHG 870

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +  +  +   L  EM     I+PD +++++++D  +   +   AL   ++M + G+  
Sbjct: 871 YNRIGRRSEMFSLFDEMVARG-IKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNV 929

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            K  YT L+ A    +      KV DE+ +    K+ +     LV  + R G  +EA R+
Sbjct: 930 CKNLYTILIDALCKHNNLSEVLKVLDEVEKQGS-KLSLATCGTLVCCFHRAGRTDEALRV 988

Query: 416 IERM 419
           +E M
Sbjct: 989 LESM 992


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/501 (23%), Positives = 221/501 (44%), Gaps = 56/501 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVK---RVRK 44
           + R+G  P V  ++ ++  L  SG               G   SV  F +++    R  +
Sbjct: 247 LWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGER 306

Query: 45  FSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           F +  IV          P+   YN ++      G   + L+LFD+M     KP  +TYN+
Sbjct: 307 FGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNL 366

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA----------AYVGFGDLEIAE 148
           + K   +         +LE +L +G+T+    F ++VA          + V   +    E
Sbjct: 367 IAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITN----E 422

Query: 149 TIVQAMREG-------RRDVCKIIRELDLED--YSSENEG---DDDDDDEVFEKLLPNSI 196
            + + MR          R++CK  +  +     + + N+G   +    + +   L     
Sbjct: 423 MVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKY 482

Query: 197 NPSSEP---PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
              +      +L K    +S  Y  +++G   + ++ + +++ G M R+      PD  T
Sbjct: 483 MKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRR---GFKPDLFT 539

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           + T++ A    G M+    +L +M   G+  + ++Y  ++ G+C+   I KAKE L E+ 
Sbjct: 540 FNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM 599

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
           D   ++P+V  YN LI G+    D +GA+     M++ GI PT ++Y +LM     +   
Sbjct: 600 DRG-LKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLV 658

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           + A  +F +  R+  V + ++ + ++++GYC++G + EA    E M+  G  PN  TY +
Sbjct: 659 EEAKTIFSQA-RENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTT 717

Query: 434 LANGISLARKPGEALLLWKEI 454
           L    S +    EA  L+ E+
Sbjct: 718 LMYAYSKSGNSEEASKLFDEM 738



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 146/331 (44%), Gaps = 60/331 (18%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           + A  NA+++        K+  ++   M   G + D +TYN+MI+ C + S+    + + 
Sbjct: 466 NLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLH 525

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSS 175
             +   G    + TF +L+ AY   G +E    ++  M+ EG +         D+  Y +
Sbjct: 526 GDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQP--------DIVSYGT 577

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +G     D          I  + E    L+ +   PN  IY  L+ GY   GR  D  
Sbjct: 578 IIDGHCKAKD----------IRKAKEYLTELMDRGLKPNVFIYNALIGGY---GRNGDIS 624

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
             + A+   + N   P +VTY +++  +  AG ++ A+ + ++     V    I Y I++
Sbjct: 625 GAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMI 684

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           +GYC+          L +M +                          A+ +F EMR+RGI
Sbjct: 685 QGYCK----------LGKMVE--------------------------AVAYFEEMRSRGI 708

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +P K++YTTLM A++ S   + A+K+FDEM+
Sbjct: 709 SPNKLTYTTLMYAYSKSGNSEEASKLFDEMV 739



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 108/521 (20%), Positives = 201/521 (38%), Gaps = 112/521 (21%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           +Y A++ A    GK     ++  ++   G +P V+TYNV++    ++ R      +  R+
Sbjct: 223 SYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRM 282

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSEN 177
            + G+T  + TF  L+                  +  G R  +V  +++E++    S   
Sbjct: 283 EQGGMTPSVVTFGILI----------------NGLARGERFGEVGIVLQEMEQLGVS--- 323

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                                            PN  IY  L+  +  +G  S  +R+  
Sbjct: 324 ---------------------------------PNEVIYNELIGWHCRKGHCSQALRLFD 350

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M  ++     P  VTY  +  AL K G M+RA ++L +M  IG+  +   +N ++    
Sbjct: 351 EMVLKK---MKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLL 407

Query: 298 QQLQ-----IDKAKEL---------------LREMADDAK---------------IEPDV 322
           Q+ +     +    E+               +RE+    K               +  ++
Sbjct: 408 QRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNL 467

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
            + N LI G         A      M  +GI    I+Y  +++     S+ + A K+  +
Sbjct: 468 ATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGD 527

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M R    K D+  +N L+  YC +G +EE   ++++MK  G  P++ +YG++ +G   A+
Sbjct: 528 MTRRG-FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAK 586

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
              +A     E+ +R                 LKP+  + +AL     R      A++ V
Sbjct: 587 DIRKAKEYLTELMDR----------------GLKPNVFIYNALIGGYGRNGDISGAIDAV 630

Query: 503 ACMEEHGIPPNKTKYKKI-YVEMHSRMFTSKHA--SQARQD 540
             M+ +GI P    Y  + Y   H+ +        SQAR++
Sbjct: 631 ETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQAREN 671



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+ +     ++  +  G++     +   MR   + A   +  +YT ++ AL KAG +D  
Sbjct: 183 PSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVA--LNEYSYTAMIKALCKAGKVDAG 240

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++LAE+ R G+    +TYN+L+   C+  ++++A  L   M +   + P VV++ ILI+
Sbjct: 241 FEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRM-EQGGMTPSVVTFGILIN 299

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G    +          EM   G++P ++ Y  L+           A ++FDEM+   ++K
Sbjct: 300 GLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLK-KMK 358

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
              V +N++ +  C+ G +E A+RI+E M   G   +   + ++
Sbjct: 359 PTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTV 402



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 6/210 (2%)

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI-GVPANRITYNILLKGY 296
           A R      + P   T    + ALV+AG +D AR+V  EM     V  N  +Y  ++K  
Sbjct: 172 AFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKAL 231

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+  ++D   E+L E+   A ++P VV+YN+L+D          A      M   G+ P+
Sbjct: 232 CKAGKVDAGFEMLAELW-RAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPS 290

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +++  L+   A   +      V  EM     V  + V +N L+  +CR G   +A R+ 
Sbjct: 291 VVTFGILINGLARGERFGEVGIVLQEM-EQLGVSPNEVIYNELIGWHCRKGHCSQALRLF 349

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGE 446
           + M      P   TY  +A  +    K GE
Sbjct: 350 DEMVLKKMKPTAVTYNLIAKALC---KEGE 376



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKISYTTLMKAFALSSQPKLANK 378
           P + + N  ++  +       A   F+EMR +R +A  + SYT ++KA   + +     +
Sbjct: 183 PSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFE 242

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +  E+ R   ++  +V +N+L++  C+ G VEEA R+  RM++ G  P+V T+G L NG+
Sbjct: 243 MLAELWR-AGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGL 301

Query: 439 SLARKPGEALLLWKEIKE 456
           +   + GE  ++ +E+++
Sbjct: 302 ARGERFGEVGIVLQEMEQ 319


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 198/468 (42%), Gaps = 72/468 (15%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP-DVLTYNVMIKLCARASRKH 110
           + ++PDT A+N  + AC   G   + + +  +M   GA P +  +YNV+I    RA R  
Sbjct: 158 AGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGG 217

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             V V + + E  +     T+ +++  ++  GDLE    +   M      VC  ++    
Sbjct: 218 DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM------VCHGLK---- 267

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                                   PN+  Y  L+ G    GR+ 
Sbjct: 268 ----------------------------------------PNAITYNVLLSGLCRAGRMG 287

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +T  +L  M  Q+     PD  TY+ +   L + G       +  +  + GV     T +
Sbjct: 288 ETSALLDEMASQK---MVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCS 344

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           ILL G C+  ++  A+E+L+ + + A + P  V YN LI+G+    +  GA + F +M++
Sbjct: 345 ILLNGLCKDGKVSIAEEVLQSLVN-AGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 403

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           R I P  I+Y  L+     + +   A  +  EM +D  V   +  +N L++ Y R G +E
Sbjct: 404 RHIKPDHITYNALINGLCKAERITNAQDLLMEM-QDNGVNPTVETFNTLIDAYGRTGQLE 462

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +   ++  M+ENG  PNV +YGS+ N      K  EA+ +  ++  +             
Sbjct: 463 KCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK------------- 509

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
               + P+ ++ +A+ D  V      +A  +V  M+ +GI P+   Y 
Sbjct: 510 ---DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 554



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y  ++ G    GR  D V +   M  +   A  P+H+TY T++   +K G ++  
Sbjct: 198 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTER---AVLPNHITYNTMIDGHIKGGDLEAG 254

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M   G+  N ITYN+LL G C+  ++ +   LL EMA   K+ PD  +Y+IL D
Sbjct: 255 FRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQ-KMVPDGFTYSILFD 313

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     DS   L+ F +    G+     + + L+       +  +A +V   ++    V 
Sbjct: 314 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 373

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             ++ +N L+ GYC+ G +E A     +MK     P+  TY +L NG+  A +   A  L
Sbjct: 374 TRVI-YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 432

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             E+++       GVN          P  E  + L D   R     K   +++ M+E+G+
Sbjct: 433 LMEMQD------NGVN----------PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 476

Query: 511 PPNKTKYKKI 520
            PN   Y  I
Sbjct: 477 KPNVVSYGSI 486



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/523 (23%), Positives = 222/523 (42%), Gaps = 60/523 (11%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           +G  P   AW+  V    A+GD G  E+V +    ++R+ +   P       P+  +YN 
Sbjct: 158 AGARPDTFAWNKAVQACVAAGDLG--EAVGM----LRRMGRDGAP------PPNAFSYNV 205

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           V+      G+    +++FD+M E    P+ +TYN MI    +         + ++++  G
Sbjct: 206 VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG 265

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +     T+  L++     G +     ++  M   ++ V        L D  S N GD   
Sbjct: 266 LKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGLSRN-GDSKA 323

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT--LMKGYMNEGRVSDTVRMLGAMRR 241
              +F K L N +                   YT   L+ G   +G+VS    +L ++  
Sbjct: 324 MLSLFGKYLKNGVTIGD---------------YTCSILLNGLCKDGKVSIAEEVLQSLV- 367

Query: 242 QEDNASH-PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              NA   P  V Y T+++   + G ++ A     +M    +  + ITYN L+ G C+  
Sbjct: 368 ---NAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 424

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I  A++LL EM D+  + P V ++N LID +             +EM+  G+ P  +SY
Sbjct: 425 RITNAQDLLMEMQDNG-VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSY 483

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            +++ AF  + +   A  + D+M      P  +V    +N +++ Y   G  ++A  ++E
Sbjct: 484 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQV----YNAIIDAYVEHGPNDQAFILVE 539

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           +MK NG  P++ TY  L  G+    +  EA              +E +N+ S+    L P
Sbjct: 540 KMKSNGISPSIVTYNLLIKGLCNQSQISEA--------------EEIINSLSN--HRLIP 583

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D    + L   C       KAL++   M ++GI      Y ++
Sbjct: 584 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 626



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 189/423 (44%), Gaps = 20/423 (4%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           +  D  +    KP+   YN +L+     G+  +   L D+M      PD  TY+++    
Sbjct: 256 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 315

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
           +R      ++ +  + L+ G+T+   T   L+      G + IAE ++Q++        +
Sbjct: 316 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 375

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           +I    +  Y    E          E         S+   +  +   P+   Y  L+ G 
Sbjct: 376 VIYNTLINGYCQTGE---------LEGAF------STFGQMKSRHIKPDHITYNALINGL 420

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
               R+++   +L  M   +DN  +P   T+ T++ A  + G +++   VL+EM   G+ 
Sbjct: 421 CKAERITNAQDLLMEM---QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 477

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N ++Y  ++  +C+  +I +A  +L +M     + P+   YN +ID ++    +  A  
Sbjct: 478 PNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK-DVLPNAQVYNAIIDAYVEHGPNDQAFI 536

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
              +M++ GI+P+ ++Y  L+K     SQ   A ++ +  L + R+  D V++N L+   
Sbjct: 537 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINS-LSNHRLIPDAVSYNTLISAC 595

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
           C  G +++A  + +RM + G    V TY  L +G+  A +  E   L++++ +   V   
Sbjct: 596 CYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSN 655

Query: 464 GVN 466
            ++
Sbjct: 656 AIH 658



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 145/352 (41%), Gaps = 55/352 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN ++N     G+ +     F QM     KPD +TYN +I    +A R      +
Sbjct: 373 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 432

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + + G+   + TF +L+ AY   G LE    ++  M+E                   
Sbjct: 433 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE------------------- 473

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              PN   Y +++  +   G++ + V +
Sbjct: 474 -------------------------------NGLKPNVVSYGSIVNAFCKNGKIPEAVAI 502

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++     P+   Y  ++ A V+ G  D+A  ++ +M   G+  + +TYN+L+KG
Sbjct: 503 LDDMFHKD---VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 559

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C Q QI +A+E++  +++  ++ PD VSYN LI       +   AL     M   GI  
Sbjct: 560 LCNQSQISEAEEIINSLSNH-RLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS 618

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           T  +Y  L+     + +      ++ +M+++  V  + +  N++VE Y + G
Sbjct: 619 TVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAI-HNIMVEAYSKYG 669



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R+    +   G   +   +N  ++       + +A  +LR M  D    P+  SYN++I 
Sbjct: 149 RRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIA 208

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A+  F+EM  R + P  I+Y T++         +   ++ D+M+    +K
Sbjct: 209 GMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG-LK 267

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            + + +N+L+ G CR G + E   +++ M      P+  TY  L +G+S
Sbjct: 268 PNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 316



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YN +++AC   G   K L L  +MH++G K  V TY+ +I     A R + + ++
Sbjct: 583 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 642

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            +++++  +         +V AY  +G+   AE + + M + R +
Sbjct: 643 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 687


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 156/315 (49%), Gaps = 27/315 (8%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVR-MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
            +P+    + L     N  RVS+ +  M G +RR       P+ VTYTT++  L     +
Sbjct: 122 LSPDLFTLSILANCLCNVNRVSEALAAMAGILRR----GYIPNVVTYTTLIKGLCMEHRI 177

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-----KIEPDV 322
             A ++   M ++G   N +TY  L+KG CQ   ++ A +L +EM +DA       +P V
Sbjct: 178 SEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGV 237

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           ++Y+I+IDG   +     A   F EM+A+G+ P  ISY+TL+  F  + +   +  +FDE
Sbjct: 238 ITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDE 297

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M+ D  V+ D+V +++L++  C+ G V EAK+++E M + G  PN+ TY SL +G  +  
Sbjct: 298 MV-DQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVG 356

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
               A  L+  +  +                 L+PDE     L +   +    ++A+ + 
Sbjct: 357 DLNSARELFLSMPSK----------------GLEPDEISYTTLINGYCKTWKVKEAMNLY 400

Query: 503 ACMEEHGIPPNKTKY 517
             M + G  PN T Y
Sbjct: 401 NEMLQVGKSPNVTTY 415



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 223/500 (44%), Gaps = 43/500 (8%)

Query: 19  RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFL 78
           R   +G+   +++   FD++++           S   P  +++N +L   A +    +  
Sbjct: 63  RNCKTGNITAIQAFHFFDLMMR-----------SHPIPPISSFNRLLGGLAKINHYSQLF 111

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
            L+++M   G  PD+ T +++       +R    +  +  IL  G    + T+ +L+   
Sbjct: 112 SLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKG- 170

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG-DDDDDDEVFEKLLPNSIN 197
                L +   I +A R   R + K+    +   Y +  +G     +  +  KL    +N
Sbjct: 171 -----LCMEHRISEATRLFLR-MQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLN 224

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
            +S+  +  K   P    Y+ ++ G    GR  +   +   M+ Q      PD ++Y+T+
Sbjct: 225 DASQYGVNCK---PGVITYSIIIDGLCKVGREDEAKELFEEMKAQ---GMIPDVISYSTL 278

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           +     AG  D+++ +  EM   GV  + +T+++L+   C++ ++ +AK+LL  M     
Sbjct: 279 IHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRG- 337

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I P++++YN LIDGF ++ D   A   F  M ++G+ P +ISYTTL+  +  + + K A 
Sbjct: 338 IVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAM 397

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +++EML+  +   ++  +  L++G  + G V +AK++   MK  G   N   YG   +G
Sbjct: 398 NLYNEMLQVGK-SPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDG 456

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +       EA+ L+ E+K                    K + E    L D   +A     
Sbjct: 457 LCKNDCLFEAMELFNELKSY----------------NFKLNIENYSCLIDGLCKAGKLET 500

Query: 498 ALEIVACMEEHGIPPNKTKY 517
           A E+   + + G+ P+   Y
Sbjct: 501 AWELFEKLSQEGLQPDVVTY 520



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 193/443 (43%), Gaps = 61/443 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    + + N   N+ +  + L     +   G  P+V+TY  +IK      R      +
Sbjct: 124 PDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRL 183

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV---CK---IIRELD 169
             R+ ++G T    T+ +L+      G++ IA  + + M          CK   I   + 
Sbjct: 184 FLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSII 243

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           ++       G +D+  E+FE++    +              P+   Y+TL+ G+   G+ 
Sbjct: 244 IDGLCK--VGREDEAKELFEEMKAQGM-------------IPDVISYSTLIHGFCCAGKW 288

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
             +  +   M    D    PD VT++ ++  L K G +  A+++L  M + G+  N ITY
Sbjct: 289 DQSKHLFDEMV---DQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITY 345

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L+ G+C    ++ A+EL   M     +EPD +SY  LI+G+        A+  +NEM 
Sbjct: 346 NSLIDGFCMVGDLNSARELFLSMPSKG-LEPDEISYTTLINGYCKTWKVKEAMNLYNEML 404

Query: 350 ARGIAPTKISYTTL-------------------MKAFALSSQPKL--------------- 375
             G +P   +Y TL                   MK + +S+  ++               
Sbjct: 405 QVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLF 464

Query: 376 -ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A ++F+E L+    K++I  ++ L++G C+ G +E A  + E++ + G  P+V TY  +
Sbjct: 465 EAMELFNE-LKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIM 523

Query: 435 ANGISLARKPGEALLLWKEIKER 457
            +G     +   A +L+++++E 
Sbjct: 524 IHGFCKVGQVDNANILFEKMEEN 546



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 195/434 (44%), Gaps = 35/434 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+   + T++  L  +G+     ++KL   ++    ++       + KP    
Sbjct: 187 MQKLGCTPNAVTYGTLIKGLCQTGNVNI--ALKLHKEMLNDASQYG-----VNCKPGVIT 239

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK--LCARA--SRKHLLVFVL 116
           Y+ +++    +G+  +  +LF++M   G  PDV++Y+ +I    CA      KHL     
Sbjct: 240 YSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHL----F 295

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + +++ G+   M TF  L+      G +  A+ +++ M + R  V  +I    L D    
Sbjct: 296 DEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQ-RGIVPNLITYNSLIDGFCM 354

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             GD +   E+F  +      PS       K   P+   YTTL+ GY    +V + + + 
Sbjct: 355 -VGDLNSARELFLSM------PS-------KGLEPDEISYTTLINGYCKTWKVKEAMNLY 400

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M +       P+  TY T++  L + G +  A+++   M   GV AN   Y I L G 
Sbjct: 401 NEMLQV---GKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGL 457

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   + +A EL  E+      + ++ +Y+ LIDG         A   F ++   G+ P 
Sbjct: 458 CKNDCLFEAMELFNEL-KSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPD 516

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y  ++  F    Q   AN +F++M  +     DI+A+N L+ G+C    +EE  +++
Sbjct: 517 VVTYNIMIHGFCKVGQVDNANILFEKM-EENGCTPDIIAYNTLLCGFCEGNKLEEVIKLL 575

Query: 417 ERMKENGFYPNVAT 430
            +M +    PN A+
Sbjct: 576 HKMVQKDVSPNAAS 589



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 154/341 (45%), Gaps = 48/341 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y+ +++     GK  +   LFD+M + G +PD++T++V+I    +  +      +
Sbjct: 270 PDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKL 329

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE +++ GI   + T+ SL+  +   GDL  A  +  +M     +  +I     +  Y  
Sbjct: 330 LEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCK 389

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +             +  ++N  +E  +L    +PN   Y TL+KG   +G+V D  ++
Sbjct: 390 TWK-------------VKEAMNLYNE--MLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKL 434

Query: 236 LGAMRRQEDNASHPDHV--------------------------------TYTTVVSALVK 263
            G M+    +A+   +                                  Y+ ++  L K
Sbjct: 435 FGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCK 494

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG ++ A ++  ++++ G+  + +TYNI++ G+C+  Q+D A  L  +M ++    PD++
Sbjct: 495 AGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENG-CTPDII 553

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           +YN L+ GF   +     +   ++M  + ++P   S T ++
Sbjct: 554 AYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVV 594



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 57/273 (20%)

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           ++N LL G  +     +   L  EM   A + PD+ + +IL +    ++  + AL     
Sbjct: 93  SFNRLLGGLAKINHYSQLFSLYNEMRL-AGLSPDLFTLSILANCLCNVNRVSEALAAMAG 151

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVF--------------------------- 380
           +  RG  P  ++YTTL+K   +  +   A ++F                           
Sbjct: 152 ILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGN 211

Query: 381 --------DEMLRDP-----RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                    EML D        K  ++ ++++++G C++G  +EAK + E MK  G  P+
Sbjct: 212 VNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPD 271

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V +Y +L +G   A K  ++  L+ E+ +      +GV          +PD      L D
Sbjct: 272 VISYSTLIHGFCCAGKWDQSKHLFDEMVD------QGV----------QPDMVTFSVLID 315

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +     +A +++  M + GI PN   Y  +
Sbjct: 316 TLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSL 348



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 11/201 (5%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P + S+N L+ G   I+  +   + +NEMR  G++P   + + L       ++   A   
Sbjct: 89  PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAA 148

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
              +LR   +  ++V +  L++G C    + EA R+  RM++ G  PN  TYG+L  G+ 
Sbjct: 149 MAGILRRGYIP-NVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLC 207

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
                  AL L KE+    +  + GVN         KP       + D   +     +A 
Sbjct: 208 QTGNVNIALKLHKEMLN--DASQYGVNC--------KPGVITYSIIIDGLCKVGREDEAK 257

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
           E+   M+  G+ P+   Y  +
Sbjct: 258 ELFEEMKAQGMIPDVISYSTL 278


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 213/471 (45%), Gaps = 41/471 (8%)

Query: 27  GPVESVKLFDVVVKRVRKFSDPDIVSD---------SKPDTAAYNAVLNACANLGKPKKF 77
           G   +V  F VV+K +   S+ D               P++  Y  +++A     +  + 
Sbjct: 200 GVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEA 259

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           LQL + M     +PDV T+N +I    RA R H    +L+R+L  G +    T+  L+  
Sbjct: 260 LQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHG 319

Query: 138 YVGFGDLEIAETIVQAM----------------REGRRDVCK--IIRELDLEDYSSENEG 179
               G ++ A  ++  +                  GR +  K  +   + +  Y  +   
Sbjct: 320 LCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYT 379

Query: 180 DDDDDDEVFEK-LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            +   D + +K  L +++   +E  ++ K F PN   YT L+ G+  +GR+ +   ++ +
Sbjct: 380 FNIMIDGLVKKGYLVSALELLNE--MVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNS 437

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +       + V Y  ++ AL K G+++ A Q+  EM+  G   +  T+N L+ G C+
Sbjct: 438 MSAK---GLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCK 494

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++++A  L  +M  +  I  + V+YN L+  F++ D    A    +EM  RG     I
Sbjct: 495 NHKMEEALSLYHDMFLEGVI-ANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNI 553

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y  L+KA   +   +    +F+EML    +   I++ N+L+ G CR G V +A + ++ 
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEML-GKGIFPTIISCNILISGLCRTGKVNDALKFLQD 612

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           M   G  P++ TY SL NG+       EA  L+ ++      + EG+  D+
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKL------QSEGIRPDA 657



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 177/397 (44%), Gaps = 45/397 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQL-FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            P+T  YN +++     G+ ++   L ++ M   G +PD  T+N+MI       +K  LV
Sbjct: 338 NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMID---GLVKKGYLV 394

Query: 114 FVLERILEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD---------V 161
             LE + EM        + T+  L+  +   G LE A  IV +M               +
Sbjct: 395 SALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLI 454

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           C + ++           G+ ++  ++F ++               K   P+   + +L+ 
Sbjct: 455 CALCKD-----------GNIEEALQLFGEMSG-------------KGCKPDIYTFNSLIN 490

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G     ++ + + +   M  +   A   + VTY T+V A +   S+ +A +++ EM   G
Sbjct: 491 GLCKNHKMEEALSLYHDMFLEGVIA---NTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRG 547

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
            P + ITYN L+K  C+   ++K   L  EM     I P ++S NILI G         A
Sbjct: 548 CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKG-IFPTIISCNILISGLCRTGKVNDA 606

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L F  +M  RG+ P  ++Y +L+         + A+ +F++ L+   ++ D + +N L+ 
Sbjct: 607 LKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNK-LQSEGIRPDAITYNTLIS 665

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            +C  G+  +A  ++ +  ++GF PN  T+  L N I
Sbjct: 666 RHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYI 702



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 25/304 (8%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           ++  +MK Y   G      R+L  M      +  P   +Y  V+  LV       A  V 
Sbjct: 136 LFILIMKHYGKAGLPGQATRLLLDMWGVY--SCDPTFKSYNVVLDILVDGDCPRVAPNVF 193

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M   GV     T+ +++K  C   ++D A  LLR+MA    + P+ V Y  LI     
Sbjct: 194 YDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCV-PNSVIYQTLIHALCE 252

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            +  + AL    +M      P   ++  ++     + +   A K+ D ML       D +
Sbjct: 253 NNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLR-GFSTDAL 311

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKE 453
            +  L+ G CRMG V+EA+ ++ ++      PN   Y +L +G   + +  EA  LL+  
Sbjct: 312 TYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNN 367

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +                +    +PD    + + D  V+  +   ALE++  M      PN
Sbjct: 368 M----------------VIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPN 411

Query: 514 KTKY 517
              Y
Sbjct: 412 VITY 415


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 218/467 (46%), Gaps = 38/467 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PD   +N ++N   +LG       +  ++ + G  PD +T   +IK LC     +  L 
Sbjct: 96  QPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALH 155

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  + ++  G  L   ++ +L+      G+   A  ++       R +  ++ + ++  Y
Sbjct: 156 F-HDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVL-------RKIDGLLVQPNVVMY 207

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           ++        D    +KL+ ++ +  SE  ++ K   P+   YTTL+ G +  GR+ + V
Sbjct: 208 NTI------IDSLCKDKLVIHASDLCSE--MIVKRIFPDVVTYTTLIYGCLIVGRLKEAV 259

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +      PD  T+  +V  L K G M +AR VLA M + GV +N +TYN L+
Sbjct: 260 GLFNQMLLKN---IKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLM 316

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GY    Q +KA  +   MA    + PDV SY+I+I+G         A+  F EM ++ +
Sbjct: 317 DGYFLVKQENKATFVFNTMARRG-VTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSM 375

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           AP  ++Y +L+       +   A  + +EM  +     D++ ++ L++  C+   V++A 
Sbjct: 376 APNTVTYNSLIDGLLKYGRISDAWDLVNEM-HNRGQPADVITYSSLLDALCKNHQVDKAI 434

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            +I ++K+ G  PN+ TY  L +G+    +  +A  +++++                L  
Sbjct: 435 TLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDL----------------LIK 478

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               D ++ + + +   +   F +AL +V+ ME++G  P+   Y+ +
Sbjct: 479 GYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETL 525



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 174/381 (45%), Gaps = 40/381 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  ++T++  L               D +V          IV    PD   Y  ++  
Sbjct: 202 PNVVMYNTIIDSLCK-------------DKLVIHASDLCSEMIVKRIFPDVVTYTTLIYG 248

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITL 126
           C  +G+ K+ + LF+QM     KPDV T+N+++  LC     K     VL  +++ G+  
Sbjct: 249 CLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARN-VLAVMIKQGVDS 307

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+ SL+  Y        A  +   M   RR V       D++ YS    G       
Sbjct: 308 NIVTYNSLMDGYFLVKQENKATFVFNTM--ARRGVTP-----DVQSYSIMING------L 354

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
              K++  ++N   E  +  K+ APN+  Y +L+ G +  GR+SD   ++  M  +   A
Sbjct: 355 CKTKMVDEAVNLFKE--MHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPA 412

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
              D +TY++++ AL K   +D+A  ++ ++   G+  N  TY IL+ G C+  ++  A+
Sbjct: 413 ---DVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQ 469

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            + +++        DV  YN++++G     L D+   AL+  ++M   G  P  ++Y TL
Sbjct: 470 AVYQDLLIKGY-HLDVKMYNVMVNGLCKEGLFDE---ALSLVSKMEDNGCIPDAVTYETL 525

Query: 364 MKAFALSSQPKLANKVFDEML 384
           ++A   + +   A K+  EM+
Sbjct: 526 VRALFENDKNDKAVKLLREMI 546



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 117/270 (43%), Gaps = 24/270 (8%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           +  ++S+LVK      A     +M    +  +  T+NIL+  +C    ++ A  +L ++ 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
                 PD V+   LI G  L      AL F +++ A+G    ++SY TL+     + + 
Sbjct: 127 -KLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGET 185

Query: 374 KLANKVF---DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           + A +V    D +L  P    ++V +N +++  C+  LV  A  +   M     +P+V T
Sbjct: 186 RAALQVLRKIDGLLVQP----NVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVT 241

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           Y +L  G  +  +  EA+ L+ ++                L   +KPD    + L D   
Sbjct: 242 YTTLIYGCLIVGRLKEAVGLFNQM----------------LLKNIKPDVYTFNILVDGLC 285

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +    +KA  ++A M + G+  N   Y  +
Sbjct: 286 KEGEMKKARNVLAVMIKQGVDSNIVTYNSL 315



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 144/363 (39%), Gaps = 40/363 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML     P V  ++ +V  L   G     E  K  +V+   +++  D +IV+        
Sbjct: 265 MLLKNIKPDVYTFNILVDGLCKEG-----EMKKARNVLAVMIKQGVDSNIVT-------- 311

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++    + +  K   +F+ M   G  PDV +Y++MI    +       V + + + 
Sbjct: 312 YNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMH 371

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              +     T+ SL+   + +G +  A  +V  M   R     +I    L D   +N   
Sbjct: 372 SKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHN-RGQPADVITYSSLLDALCKNH-Q 429

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D    +  K+    I P             N   YT L+ G    GR+ D   +   + 
Sbjct: 430 VDKAITLITKIKDQGIQP-------------NIYTYTILVDGLCKNGRLKDAQAVYQDLL 476

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +     H D   Y  +V+ L K G  D A  ++++M   G   + +TY  L++   +  
Sbjct: 477 IK---GYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFEND 533

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA-----GALTFFNEMRARGIAP 355
           + DKA +LLREM     ++   V  NI  +  + +  +A     G   F   + + G+  
Sbjct: 534 KNDKAVKLLREMI----VQGSAVGSNISSNSMLCVYQAAPLASFGVFWFIFGLASLGLDA 589

Query: 356 TKI 358
            KI
Sbjct: 590 FKI 592


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 215/496 (43%), Gaps = 76/496 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVV------KRVRKFSDPDIVSDS 54
           M++S  LP +  ++ ++S +A          +K FD+V+      K ++   +P IV+ S
Sbjct: 33  MVKSRPLPSIFEFNKLLSAIA---------KMKKFDLVISLALLGKMMKLGYEPSIVTLS 83

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
                   ++LN   +  +    + L DQM E G +PD +T+  +I      ++    V 
Sbjct: 84  --------SLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 135

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R+++ G    + T+  +V      GD+++A  ++  M   + +   +I    ++   
Sbjct: 136 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC 195

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                DD             ++N   E  +  K   PN   Y++L+    + GR SD  +
Sbjct: 196 KYRHVDD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCSYGRWSDASQ 240

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT+  ++ A VK G    A ++  +M +  +  +  TYN L+ 
Sbjct: 241 LLSDMIEKKIN---PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLIN 297

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++DKAK++   M       PD+ +YN LI GF            F EM  RG+ 
Sbjct: 298 GFCMHDRLDKAKQMFEFMVS-KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 356

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
              ++YTTL++          A KVF +M+ D                            
Sbjct: 357 GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEV 416

Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                   +K+DI  +  ++EG C+ G V++   +   +   G  PNV TY ++ +G+  
Sbjct: 417 FDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 476

Query: 441 ARKPGEALLLWKEIKE 456
            R   EA  L K++KE
Sbjct: 477 KRLLQEAYALLKKMKE 492



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 186/447 (41%), Gaps = 43/447 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P++  +  VV+ L   GD          D+    + K     I    + D   
Sbjct: 140 MVQRGCQPNLVTYGVVVNGLCKRGD---------IDLAFNLLNKMEAAKI----EADVVI 186

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++++          L LF +M   G +P+V+TY+ +I       R      +L  ++
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 246

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G    AE +         D+ K   + D+  Y+S   G 
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKL-------HDDMIKRSIDPDIFTYNSLINGF 299

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D   ++FE              ++ K   P+   Y TL+KG+    RV D   +
Sbjct: 300 CMHDRLDKAKQMFE-------------FMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 346

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         D VTYTT++  L   G  D A++V  +M   GVP + +TY+ILL G
Sbjct: 347 F---REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 403

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +++KA E+   M   ++I+ D+  Y  +I+G             F  +  +G+ P
Sbjct: 404 LCNNGKLEKALEVFDYMQ-KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 462

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y T++         + A  +  +M  D  +  D   +N L+  + R G    +  +
Sbjct: 463 NVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP-DSGTYNTLIRAHLRDGDKAASAEL 521

Query: 416 IERMKENGFYPNVATYGSLANGISLAR 442
           I  M+   F  + +T G +AN +   R
Sbjct: 522 IREMRSCRFVGDASTIGLVANMLHDGR 548



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 155/363 (42%), Gaps = 73/363 (20%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           + P+    ++L+ GY +  R+SD V ++  M         PD +T+TT++  L       
Sbjct: 75  YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM---GYRPDTITFTTLIHGLFLHNKAS 131

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  ++  M + G   N +TY +++ G C++  ID A  LL +M + AKIE DVV +N +
Sbjct: 132 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM-EAAKIEADVVIFNTI 190

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK----------------------- 365
           ID          AL  F EM  +GI P  ++Y++L+                        
Sbjct: 191 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 250

Query: 366 ------------AFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVE 410
                       AF    +   A K+ D+M++   DP    DI  +N L+ G+C    ++
Sbjct: 251 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP----DIFTYNSLINGFCMHDRLD 306

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK-------- 462
           +AK++ E M     +P++ TY +L  G   +++  +   L++E+  R  V          
Sbjct: 307 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 366

Query: 463 EGVNADSD---------------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           +G+  D D               +PP +     LLD L +         KALE+   M++
Sbjct: 367 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN----NGKLEKALEVFDYMQK 422

Query: 508 HGI 510
             I
Sbjct: 423 SEI 425


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/489 (24%), Positives = 196/489 (40%), Gaps = 90/489 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A +  +L +   +      L L  QM  FG  P++ T N++I       R      V
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G    + TF +L+                       R +C             
Sbjct: 126 LAKILKLGHQPNIATFNTLI-----------------------RGLCV------------ 150

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K++              + F PN   Y TL+ G    G  S  +R+
Sbjct: 151 --EGKIGEVLHLFDKMIG-------------EGFQPNVVTYGTLINGLCKVGSTSAAIRL 195

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R  E     PD V YT+++ +L K   + +A  + +EM   G+  +  TYN L+  
Sbjct: 196 L---RSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHA 252

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL EM  ++KI P+VV ++ ++D          A    + M  RG+ P
Sbjct: 253 LCNLCEWKHVTALLNEMV-NSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEP 311

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y  LM    L S+   A KVFD M+       D+V+++ L+ GYC++  +E+A  +
Sbjct: 312 NVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAP-DVVSYSTLINGYCKIQRIEKAMYL 370

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CE 459
            E M      PN  TY +L +G+    +  +A+ L+ E+  R                C+
Sbjct: 371 FEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCK 430

Query: 460 VKK-----------EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            ++           EG N D        PD ++   + D   RA     A ++ + +   
Sbjct: 431 NRRLDEAIALLKAIEGSNMD--------PDIQIYTIVIDGMCRAGELEAARDLFSNLSSK 482

Query: 509 GIPPNKTKY 517
           G+ PN   Y
Sbjct: 483 GLHPNVWTY 491



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 206/472 (43%), Gaps = 64/472 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P++  ++T++  L   G  G  E + LFD ++               +P+   
Sbjct: 129 ILKLGHQPNIATFNTLIRGLCVEGKIG--EVLHLFDKMIGE-----------GFQPNVVT 175

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +PDV+ Y  +I    +  +      +   ++
Sbjct: 176 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMI 235

Query: 121 EMGITLCMTTFQSLVAAYVGFG-------------------DLEIAETIVQAM-REGR-- 158
             GI+  + T+ SL+ A                        ++ I  T+V A+ +EG+  
Sbjct: 236 HQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVM 295

Query: 159 --RDVCKIIRELDLE----DYSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPK 207
              DV  ++ +  +E     Y++  +G     + D+  +VF+              ++ K
Sbjct: 296 EAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT-------------MVCK 342

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
            FAP+   Y+TL+ GY    R+   + +   M R+E     P+ VTY+T++  L   G +
Sbjct: 343 GFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE---LIPNTVTYSTLMHGLCHVGRL 399

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             A  +  EM   G   + ++Y ILL   C+  ++D+A  LL+ + + + ++PD+  Y I
Sbjct: 400 QDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAI-EGSNMDPDIQIYTI 458

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           +IDG     +   A   F+ + ++G+ P   +YT ++           A+K+F EM R  
Sbjct: 459 VIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 518

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
               +   +N++  G+ R        ++++ M   GF  +V+T   L   +S
Sbjct: 519 Y-SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLS 569



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P +  +  L+     +   +  L+  ++M + GI P   +   L+ +F    +   A  V
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             ++L+    + +I  +N L+ G C  G + E   + ++M   GF PNV TYG+L NG+ 
Sbjct: 126 LAKILKLGH-QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLC 184

Query: 440 LARKPGEALLLWKEIKE-RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
                  A+ L + +++  C+                 PD  +  ++ D   +     +A
Sbjct: 185 KVGSTSAAIRLLRSMEQGNCQ-----------------PDVVVYTSIIDSLCKDRQVTQA 227

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
             + + M   GI P+   Y  +
Sbjct: 228 FNLFSEMIHQGISPSIFTYNSL 249


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 183/407 (44%), Gaps = 26/407 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQM----HEFGAKPDVLTYNVMIKLCARASRKHL 111
           P+  +YN +L    +  + ++ L L   M       G  PDV++Y  +I    R  +   
Sbjct: 165 PNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDK 224

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDL 170
              + + +L+ G++    T+  L+  Y   G  + A  I + M R+G      ++    L
Sbjct: 225 AYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEP--DVVTYNTL 282

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             Y  +N G   +  +VF+ ++              K   P+S IY TL+ GY  EG + 
Sbjct: 283 MVYLCKN-GRSMEARKVFDSMVK-------------KGHKPDSSIYGTLLHGYATEGYLV 328

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              ++L  M R   N + PDH  +  ++ A  K G +D A    ++M + G+  N +TY 
Sbjct: 329 QMHQLLDVMVR---NGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYG 385

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++   C+  ++D A      +  +  + P+ V +  LI G    D    A     EM  
Sbjct: 386 TVMDALCRVGKVDDAMSQFDRLISEG-LTPNGVVFRTLIHGLCACDKWDKAEELAVEMIG 444

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI P  I + TL+           A  +FD M+R   V+ D++ +  L++GYC  G V+
Sbjct: 445 RGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVR-VDVQCDVITYTTLIDGYCLDGKVD 503

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA +++E M  +G  PN  TY ++ NG     +  +A  L++++  +
Sbjct: 504 EATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASK 550



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 178/399 (44%), Gaps = 24/399 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  V+N     G+  K   LFD+M + G  P+ +TYN ++     + +    + +
Sbjct: 204 PDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGI 263

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
             ++   G+   + T+ +L+      G    A  +  +M ++G +    I   L L  Y+
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTL-LHGYA 322

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +E  G      ++ + ++ N   P             +  I+  L+  Y   G V + + 
Sbjct: 323 TE--GYLVQMHQLLDVMVRNGTQP-------------DHYIFNILIGAYAKHGMVDEAML 367

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               MR+Q     HP+ VTY TV+ AL + G +D A      +   G+  N + +  L+ 
Sbjct: 368 AFSKMRQQ---GLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIH 424

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C   + DKA+EL  EM     I P+ + +N L++          A   F+ M    + 
Sbjct: 425 GLCACDKWDKAEELAVEMIGRG-ICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQ 483

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              I+YTTL+  + L  +   A K+ + M+ D  VK + V +N ++ GYC+ G +E+A  
Sbjct: 484 CDVITYTTLIDGYCLDGKVDEATKLLEGMVLDG-VKPNEVTYNTIINGYCKNGRIEDACS 542

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEA--LLLW 451
           +  +M   G  P +  Y ++ +G+   R+   A  L LW
Sbjct: 543 LFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLW 581



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 191/433 (44%), Gaps = 37/433 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P V  ++T++  L  +G    +E+ K+FD +VK+             KPD++ 
Sbjct: 267 MCRDGVEPDVVTYNTLMVYLCKNGRS--MEARKVFDSMVKK-----------GHKPDSSI 313

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+  A  G   +  QL D M   G +PD   +N++I   A+       +    ++ 
Sbjct: 314 YGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMR 373

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSENEG 179
           + G+   + T+ +++ A    G ++ A +   + + EG      + R L +    + ++ 
Sbjct: 374 QQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTL-IHGLCACDKW 432

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D  ++  V                ++ +   PN+  + TL+     EG V+    +   M
Sbjct: 433 DKAEELAV---------------EMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLM 477

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R +      D +TYTT++      G +D A ++L  M   GV  N +TYN ++ GYC+ 
Sbjct: 478 VRVDVQC---DVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKN 534

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +I+ A  L R+MA    + P +V Y+ ++ G       A A   +  M   GI     +
Sbjct: 535 GRIEDACSLFRQMASKG-VNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGT 593

Query: 360 YTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           Y  +++    ++    A ++F  + L D  ++     +N++++   + G  +EAK +   
Sbjct: 594 YNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNR--TFNIMIDALLKGGRHDEAKDLFAS 651

Query: 419 MKENGFYPNVATY 431
           +   G  PNV TY
Sbjct: 652 LLARGLVPNVVTY 664



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 135/311 (43%), Gaps = 58/311 (18%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL- 308
           D  TY+ V+    +AG +D A   L  + R G  A  IT++ LLKG C   +   A ++ 
Sbjct: 95  DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIA 154

Query: 309 LRE------------------------------------MADDAK--IEPDVVSYNILID 330
           LR                                     MADD +    PDVVSY  +I+
Sbjct: 155 LRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVIN 214

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G +       A   F+EM  +G++P  I+Y  L+  +  S +PK A  +F +M RD  V+
Sbjct: 215 GLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDG-VE 273

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+V +N L+   C+ G   EA+++ + M + G  P+ + YG+L +G +      E  L+
Sbjct: 274 PDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYAT-----EGYLV 328

Query: 451 WKEIKERCEVK-KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
             ++ +  +V  + G           +PD  + + L     +     +A+   + M + G
Sbjct: 329 --QMHQLLDVMVRNGT----------QPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQG 376

Query: 510 IPPNKTKYKKI 520
           + PN   Y  +
Sbjct: 377 LHPNIVTYGTV 387


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 195/431 (45%), Gaps = 41/431 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YNA++N     G+  +   +  +M   G  PD  TYN ++    R         
Sbjct: 185 KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE 244

Query: 115 VLERILEMGITLCMTTFQSLVAAY----------VGFGDLE----IAETIVQAM------ 154
           +   +L  G+   + +F SL+A +          V F D++    + + ++  +      
Sbjct: 245 IFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 304

Query: 155 REGRRDVCKIIRE--------LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
           R G       IR+        LD+  Y++   G         EK+L ++     E  ++ 
Sbjct: 305 RNGNMLEALKIRDEMLEQGCVLDVIAYNTILNG------LCKEKMLTDADKLFDE--MVE 356

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +   P+   +TTL+ G+  +G ++  + + G M ++      PD V Y T++    K G 
Sbjct: 357 RGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN---IKPDIVAYNTLIDGFCKVGE 413

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           M++A ++   M    +  N ITY IL+  YC    + +A  L   M +   I+P +V+ N
Sbjct: 414 MEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG-IKPTLVTCN 472

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +I G+    DS+ A  F   M A+G+AP  ISY TL+  F        A    ++M ++
Sbjct: 473 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKE 532

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  DI+ +N+++ G+CR G ++EA+ ++ +M E G  P+ +TY +L NG        E
Sbjct: 533 GLLP-DIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNE 591

Query: 447 ALLLWKEIKER 457
           A     E+ +R
Sbjct: 592 AFRFHDEMLQR 602



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 127/544 (23%), Positives = 231/544 (42%), Gaps = 61/544 (11%)

Query: 1   MLRS-GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           +LRS GYL  + A ++++  L        ++ V+L   V + V +       S  + +  
Sbjct: 73  ILRSKGYLVSINACNSLLGGLV------KIDWVELAWEVHREVVR-------SGIELNVY 119

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
             N ++NA    GK         +M   G   D++TYN +I    R         ++  +
Sbjct: 120 TLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSM 179

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETI-VQAMREGRRDVCKIIRELDLEDYSSENE 178
            + G+   + T+ +++      G    A+ I ++ +  G          L +E    +N 
Sbjct: 180 ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 239

Query: 179 GDDDDDDEVFEKLL-----PNSINPSSEPPLLPKT-----------------FAPNSRIY 216
               +  E+F ++L     P+ ++ SS   +  +                    P++ IY
Sbjct: 240 ---SEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIY 296

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T LM GY   G + + +++   M  Q       D + Y T+++ L K   +  A ++  E
Sbjct: 297 TVLMHGYCRNGNMLEALKIRDEMLEQ---GCVLDVIAYNTILNGLCKEKMLTDADKLFDE 353

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G   +  T+  L+ G+CQ   + KA  L   M     I+PD+V+YN LIDGF  + 
Sbjct: 354 MVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMT-QRNIKPDIVAYNTLIDGFCKVG 412

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   A   ++ M +R I P  I+Y  L+ A+        A +++D M+ +  +K  +V  
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMI-EKGIKPTLVTC 471

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N +++GYCR G   +A   + RM   G  P+  +Y +L NG        +A  LW     
Sbjct: 472 NTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKA-FLWIN--- 527

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
             +++KEG          L PD    + + +   R    ++A  ++  M E GI P+++ 
Sbjct: 528 --KMEKEG----------LLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRST 575

Query: 517 YKKI 520
           Y  +
Sbjct: 576 YTAL 579



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 174/382 (45%), Gaps = 45/382 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G +P + ++S++++  + +         +  D  +   R      +V    PD   
Sbjct: 249 MLRQGVVPDLVSFSSLIAVFSRN---------RHLDQALVYFRDMKKFGLV----PDNVI 295

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV---FVL 116
           Y  +++     G   + L++ D+M E G   DV+ YN ++  LC    ++ +L     + 
Sbjct: 296 YTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLC----KEKMLTDADKLF 351

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYS 174
           + ++E G      TF +L+  +   G++  A ++   M  R  + D+      +D     
Sbjct: 352 DEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKV 411

Query: 175 SENE-GDDDDDDEVFEKLLPN------------SINPSSEP-----PLLPKTFAPNSRIY 216
            E E   +  D  +  K+ PN            S+   SE       ++ K   P     
Sbjct: 412 GEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTC 471

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            T++KGY   G  S     LG M  +      PDH++Y T+++  V+  +MD+A   + +
Sbjct: 472 NTVIKGYCRSGDSSKADEFLGRMIAK---GVAPDHISYNTLINGFVREDNMDKAFLWINK 528

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M + G+  + ITYN+++ G+C+Q ++ +A+ +LR+M +   I PD  +Y  LI+G +  D
Sbjct: 529 MEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKG-INPDRSTYTALINGHVTQD 587

Query: 337 DSAGALTFFNEMRARGIAPTKI 358
           +   A  F +EM  RG AP  +
Sbjct: 588 NLNEAFRFHDEMLQRGFAPDDV 609



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 17/183 (9%)

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F  +R++G   +  +  +L+         +LA +V  E++R   +++++   N++V   C
Sbjct: 71  FRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSG-IELNVYTLNIMVNALC 129

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG 464
           + G  ++ K  +  M+ NG Y ++ TY +L     +     E LL     +E  E+    
Sbjct: 130 KDGKFDDVKSFLSEMEGNGIYADMVTYNTL-----IGAYCREGLL-----EEAFEIMNS- 178

Query: 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
             AD  L P L     +++ L   C +  + R A  I+  M   G+ P+ T Y  + VE 
Sbjct: 179 -MADKGLKPSLFTYNAIINGL---CKKGRYAR-AKGILIEMLNIGLSPDTTTYNTLLVES 233

Query: 525 HSR 527
             R
Sbjct: 234 CRR 236


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 211/464 (45%), Gaps = 50/464 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+RSG  P V  ++T++  L   G+   VE+ KLFD +        D  I     P+ A 
Sbjct: 308 MVRSGVEPSVATFTTILHALCREGN--VVEARKLFDGI-------QDMGIA----PNAAI 354

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++      +  +   L+++M   G  PD +T+N+++    +  R      +L+ ++
Sbjct: 355 YNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLI 414

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+ L  + +  +V++    G L+ A  ++Q + E    +  +     +  YS    G 
Sbjct: 415 VSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYS--RAGL 472

Query: 181 DDDDDEVFEKLLPNSINPSSEPP----------------------LLPKTFAPNSRIYTT 218
           +D   E +  ++     PSS                         +L K F  N   YT 
Sbjct: 473 EDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTV 532

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ GY     +     +   M+   +   +PD V +T ++  L KAG+++ A +V  EM+
Sbjct: 533 LLDGYFKMNNLEGAQFLWKEMK---ERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMS 589

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
            IG   N   YN L++G C   ++ +A +L +EM     +  D  ++NI+IDGF      
Sbjct: 590 AIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLS-DTFTFNIIIDGFCRRGQM 648

Query: 339 AGALTFFNEMRARGIAPTKISYTTLM----KAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
             A+  F +M+  G+ P   ++  L+    KAF +    ++ NK++   L DP    DI 
Sbjct: 649 KFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGL-DP----DIT 703

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            +N  + GYCRM  + +A  I++++   G  P+  TY ++ +GI
Sbjct: 704 TYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGI 747



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 112/512 (21%), Positives = 216/512 (42%), Gaps = 68/512 (13%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           I    +P    +NA++       +      L   M +F   PDV+T+N++I  C    R 
Sbjct: 239 IFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRT 298

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAA-------------YVGFGDLEIA--ETIVQAM 154
            + +  L  ++  G+   + TF +++ A             + G  D+ IA    I   +
Sbjct: 299 WVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTL 358

Query: 155 REGR---RDVCK--IIRE-------------LDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
            +G    R+V +  ++ E              ++  +     G  +D D + + L+ + +
Sbjct: 359 MDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGL 418

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                          +S +Y  ++      GR+ + +++L  +  +    S    V + +
Sbjct: 419 -------------FLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLS---VVAFNS 462

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++ A  +AG  D+A +    M R G   +  T N LL G C++  + +A+ LL  M +  
Sbjct: 463 LIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKG 522

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
               + V+Y +L+DG+  +++  GA   + EM+ RGI P  +++T L+   + +   + A
Sbjct: 523 -FPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEA 581

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            +VF EM     V  +  A+N L+ G C  G V EA ++ + M++ G   +  T+  + +
Sbjct: 582 YEVFLEMSAIGFVPNNF-AYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIID 640

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G     + G+       I+   ++++ G          L PD    + L     +A    
Sbjct: 641 GFC---RRGQMKF---AIETFLDMQRIG----------LLPDIFTFNILIGGYCKAFDMV 684

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
            A EIV  M   G+ P+ T Y   Y+  + RM
Sbjct: 685 GAGEIVNKMYSCGLDPDITTYNT-YMHGYCRM 715



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +  TL++G++N G   + + +L  MR        P   + T ++  L++ G      ++ 
Sbjct: 179 VLNTLLRGFLNVGMGFEALEVLRMMR---GVGVRPGLSSITILLRLLLRIGDYGSVWKLF 235

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M   G   + +T+N ++ G+C+Q ++   + LL  M       PDVV++NILI+   +
Sbjct: 236 KDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMP-KFMCSPDVVTFNILINACCI 294

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
              +  A+ + + M   G+ P+  ++TT++ A         A K+FD  ++D  +  +  
Sbjct: 295 GGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDG-IQDMGIAPNAA 353

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +N L++GY +   V +A  + E M+  G  P+  T+  L  G
Sbjct: 354 IYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWG 396



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 57/315 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  A+ A+++  +  G  ++  ++F +M   G  P+   YN +I+      R    + +
Sbjct: 560 PDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKL 619

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYS 174
            + + + G+     TF  ++  +   G ++ A ET +   R G                 
Sbjct: 620 EKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIG----------------- 662

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                        LLP  F  N      L+ GY    +  D V 
Sbjct: 663 -----------------------------LLPDIFTFN-----ILIGGYC---KAFDMVG 685

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               + +       PD  TY T +    +   M++A  +L ++   G+  + +TYN +L 
Sbjct: 686 AGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLS 745

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C  + +D+A  L  ++     I P+V++ N+L+  F        AL +  ++R     
Sbjct: 746 GICSDI-LDRAMILTAKLLKMGFI-PNVITTNMLLSHFCKQGMPEKALIWGQKLREISFG 803

Query: 355 PTKISYTTLMKAFAL 369
             +ISY  L +A+ L
Sbjct: 804 FDEISYRILDQAYCL 818


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/498 (23%), Positives = 207/498 (41%), Gaps = 92/498 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T+ ++ +L A   +G     + LF Q+   G  P + T+ ++I      S       +
Sbjct: 53  PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE----LDLE 171
           L  IL+ G    + TF +++  +       I   I +A+     D C+ +       D  
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFC------INGMIFKAL-----DFCQNLLAQGYLFDQF 161

Query: 172 DYSSENEGDDDDDD-----EVFEKLLPNSINPS-----------SEPPLLPKTFAPNSRI 215
            Y +   G   +        + +++  +S+ P+            +   +       S+I
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 216 -----------YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                      Y +L+ G  + GR  +  ++L  M R+  +   PD  T+  ++ AL K 
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVD---PDDYTFNILIDALCKE 278

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +  A+ VLA M++ G   + +TYN L++GYC +  + +A+EL   M     +EPDV++
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRG-LEPDVLN 337

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM- 383
           YN+LIDG+        A+  F E+  + + PT  SY +L+     S +     K+ DEM 
Sbjct: 338 YNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397

Query: 384 ---------------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVE 410
                                            +    VK +IV +N +++GYC    V 
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN 457

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            AK I  RM ++G  P++  Y  L NG        EA++L+KE++ +            +
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHK------------N 505

Query: 471 LPPPLKPDEELLDALADI 488
           L P +     L+D L ++
Sbjct: 506 LIPDIASYNSLIDGLCNL 523



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 140/644 (21%), Positives = 257/644 (39%), Gaps = 129/644 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+SGY P++  ++T+++    +G             ++ +   F    +      D   
Sbjct: 116 ILKSGYQPNLVTFNTIINGFCING-------------MIFKALDFCQNLLAQGYLFDQFT 162

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N  +  G+ K  L L  +M +   +P+++ Y+ +I    +       + +  +I 
Sbjct: 163 YGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRD-----------VCKIIREL 168
           E GI L   T+ SL+      G   E+ + + + +RE               +CK  R L
Sbjct: 223 ERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282

Query: 169 ----------------DLEDYSSENEG-----DDDDDDEVFEKLLPNSINPSSE------ 201
                           D+  Y++  EG     +  +  E+F +++   + P         
Sbjct: 283 EAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 202 ----------------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                             L  K   P    Y +L+ G  N GR+S   ++L  M     +
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM---HGS 399

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
           A  PD VTY  ++ AL K G +  A  VL  M + GV  N +TYN ++ GYC +  ++ A
Sbjct: 400 AQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA 459

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           K++   M     +EPD+++YN+LI+G+   +    A+  F EMR + + P   SY +L+ 
Sbjct: 460 KDIFNRMVKSG-LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLID 518

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA----KRIIE---- 417
                 +     ++ DEM  D     D++ +N+L++ +C+    ++A    ++I+E    
Sbjct: 519 GLCNLGRIPHVQELLDEMC-DSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWP 577

Query: 418 ------------------RMKE--------NGFYPNVATYGSLANGISLARKPGEALLLW 451
                             +M E        +G  PNV TY  L N +      GEA+LL 
Sbjct: 578 DFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLL 637

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA-DICVRAAFFRKALEIVACMEEHGI 510
            +++            D+D PP         DA+  +I +     R   +    + E  I
Sbjct: 638 SKME------------DNDRPP---------DAITFEIIIGVLLQRNETDKAEKLREEMI 676

Query: 511 PPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKF 554
                  +K   + H+  F +    Q+  +  R +   A + +F
Sbjct: 677 ARGLVNIEKSLNQSHNVFFPASSGFQSVTEFYRVQASHAGSHRF 720


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 206/454 (45%), Gaps = 46/454 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P  +A + V+SRL         E+++LF  +  +               +  +YN +
Sbjct: 227 GISPSPEACNAVLSRLPLD------EAIELFQELPHK---------------NVCSYNIL 265

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           L A  + G+ K   QLFD+M    + PDV+TY ++I   CA    ++  V +L+ ++  G
Sbjct: 266 LKALCDAGRVKDARQLFDEM---ASAPDVVTYGILIHGHCALGELENA-VKLLDEMVAGG 321

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +    T + S+VA     G +  A  +V+ M +      K+I  LD   Y++   G  + 
Sbjct: 322 VEPNATVYTSVVALLCDKGWISDALRVVEDMVQR-----KVI--LDEALYTTVLSGFCNK 374

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
            D V  +   + +          K  A +   YTT++ G      + +  ++L  M  + 
Sbjct: 375 GDLVSARRWFDEMQR--------KGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARR 426

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
            +    D VTYT ++    K G M  A Q+   M + GV  N +TY  L  G C+Q  + 
Sbjct: 427 LDV---DEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQ 483

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            A ELL EM++   +E +  +YN LI+G         A+    +M    + P   +YTTL
Sbjct: 484 AANELLHEMSNKG-LELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTL 542

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           + A   S     A+ +  EML D  +K  IV +N+L+ G+C  G VE  K++++ M E  
Sbjct: 543 IDALCKSGDLDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKN 601

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +PN ATY SL     +         ++K ++ R
Sbjct: 602 IHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSR 635



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 186/426 (43%), Gaps = 37/426 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+  G  P+   +++VV+ L    D G + +++++ + +V+R               D A
Sbjct: 317 MVAGGVEPNATVYTSVVALLC---DKGWISDALRVVEDMVQRKVIL-----------DEA 362

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y  VL+   N G      + FD+M   G   D +TY  MI    RA        +L+ +
Sbjct: 363 LYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEM 422

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
               + +   T+  L+  Y   G +  A  +  AM + R     ++    L D   + +G
Sbjct: 423 WARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQ-RGVTPNVVTYTALTDGLCK-QG 480

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D    +E+  ++               K    N+  Y +L+ G    G +   +R +  M
Sbjct: 481 DVQAANELLHEMSN-------------KGLELNACTYNSLINGLCKAGYLEQAMRTMADM 527

Query: 240 RRQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
               D A   PD  TYTT++ AL K+G +DRA  +L EM   G+    +TYN+L+ G+C 
Sbjct: 528 ----DTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 583

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             +++  K+LL  M +   I P+  +YN L+  + + ++       +  MR+R + P + 
Sbjct: 584 SGRVEGGKKLLDWMLEK-NIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNEN 642

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y  L+K    +   K A    DEM++    ++   +++ L+    +     EA+ +   
Sbjct: 643 TYNILIKGHCKARNMKEALYFHDEMIQKG-FRLTATSYSALIRLLNKKKKFVEARELFHD 701

Query: 419 MKENGF 424
           M++ G 
Sbjct: 702 MRKEGL 707


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 131/522 (25%), Positives = 226/522 (43%), Gaps = 94/522 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR  + P   A S++V  L   G     E++ L    VKRV +F          P+   
Sbjct: 323 MLRLRFSPSEAAVSSLVEGLRKRGK--VEEALNL----VKRVAEFG-------VSPNIFV 369

Query: 61  YNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           YNA++++   L K + F +   LFD+M + G  P+ +TY+++I +  R  +    +  L 
Sbjct: 370 YNALIDS---LCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLG 426

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
            +++MG+   +  + SL+  +  FGD+  AE+++  M                       
Sbjct: 427 EMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEM----------------------- 463

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                             IN   EP ++          YT+LM GY ++G+++  +R+  
Sbjct: 464 ------------------INKKLEPTVVT---------YTSLMGGYCSKGKINKALRLYH 496

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M  +      P   T+TT++S L +AG +  A ++  EM    V  NR+TYN++++GYC
Sbjct: 497 EMTGK---GIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYC 553

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           ++  + KA E L EM +   I PD  SY  LI G  L   ++ A  F + +        +
Sbjct: 554 EEGNMSKAFEFLNEMIEKG-IVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNE 612

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           I YT L+  F    + + A  V  +M LR   V +D+V + +L++G  +    +    ++
Sbjct: 613 ICYTGLLHGFCREGKLEEALSVCQDMGLRG--VDLDLVCYGVLIDGSLKHKDRKVFLGLL 670

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWK-EIKERCEVKKEGVNADSDLPPPL 475
           + M + G  P+   Y S+ +  S      EA  +W   I E C                 
Sbjct: 671 KEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC----------------- 713

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            P+E    A+ +   +A F  +A  + + M      PN+  Y
Sbjct: 714 VPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTY 755



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 199/466 (42%), Gaps = 73/466 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  AA ++++      GK ++ L L  ++ EFG  P++  YN +I    +         +
Sbjct: 330 PSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELL 389

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            +R+ ++G+     T+  L+  +   G L+ A + +  M                     
Sbjct: 390 FDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEM--------------------- 428

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                               I+   +P + P         Y +L+ G+   G +S    +
Sbjct: 429 --------------------IDMGLKPSVYP---------YNSLINGHCKFGDISAAESL 459

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M  ++     P  VTYT+++      G +++A ++  EMT  G+  +  T+  LL G
Sbjct: 460 MAEMINKK---LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSG 516

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +   I  A +L  EMA+   ++P+ V+YN++I+G+    + + A  F NEM  +GI P
Sbjct: 517 LFRAGLIRDAVKLFTEMAE-WNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVP 575

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              SY  L+    L+ Q   A KVF + L     +++ + +  L+ G+CR G +EEA  +
Sbjct: 576 DTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSV 634

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALL-LWKEIKERCEVKKEGVNADSDLPPP 474
            + M   G   ++  YG L +G SL  K  +  L L KE+ +R                 
Sbjct: 635 CQDMGLRGVDLDLVCYGVLIDG-SLKHKDRKVFLGLLKEMHDR----------------G 677

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           LKPD+ +  ++ D   +   F++A  I   M   G  PN+  Y  +
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAV 723



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 185/436 (42%), Gaps = 45/436 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P +  ++T++S L  +G     ++VKLF  + +            + KP+   
Sbjct: 498 MTGKGIVPSIYTFTTLLSGLFRAGL--IRDAVKLFTEMAEW-----------NVKPNRVT 544

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN ++      G   K  +  ++M E G  PD  +Y  +I  LC         VFV + +
Sbjct: 545 YNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFV-DGL 603

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            +    L    +  L+  +   G LE A ++ Q M  G R V     +LDL  Y    +G
Sbjct: 604 HKGNCELNEICYTGLLHGFCREGKLEEALSVCQDM--GLRGV-----DLDLVCYGVLIDG 656

Query: 180 D-DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                D +VF  LL           +  +   P+  IYT+++     + +  D     G 
Sbjct: 657 SLKHKDRKVFLGLLKE---------MHDRGLKPDDVIYTSMIDA---KSKTGDFKEAFGI 704

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY----NILLK 294
                +    P+ VTYT V++ L KAG ++ A  + ++M       N++TY    +IL K
Sbjct: 705 WDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTK 764

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G      + KA EL   +     +  +  +YN+LI GF        A      M   G++
Sbjct: 765 GVGD---MKKAVELHNAILKG--LLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVS 819

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  I+YTT++      +  K A ++++ M  +  ++ D VA+N L+ G C  G + +A  
Sbjct: 820 PDCITYTTMISELCRRNDVKKAIELWNSM-TEKGIRPDRVAYNTLIHGCCVAGEMGKATE 878

Query: 415 IIERMKENGFYPNVAT 430
           +   M   G  PN  T
Sbjct: 879 LRNEMLRQGLKPNTET 894



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 20/305 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  L++ Y+   RV D V +   M  +   +  P+  T + ++  LVK      A ++  
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMMTKV--SLLPEVRTLSALLHGLVKFRHFGLAMELFD 216

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M  +G+  +   Y  +++  C+   + +AKE++ +M +    + ++V YN+LIDG    
Sbjct: 217 DMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQM-EATGCDVNIVPYNVLIDGLCKK 275

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+    ++  + + P  ++Y TL+       + ++  ++ DEMLR  R      A
Sbjct: 276 QKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLR-LRFSPSEAA 334

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            + LVEG  + G VEEA  +++R+ E G  PN+  Y +L + +   R   EA LL+  + 
Sbjct: 335 VSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMG 394

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +                  L P++     L D+  R      AL  +  M + G+ P+  
Sbjct: 395 K----------------IGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVY 438

Query: 516 KYKKI 520
            Y  +
Sbjct: 439 PYNSL 443


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 219/470 (46%), Gaps = 38/470 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +LR G +  V + +  +SRL+ +      E +K   + VK   +F +  +  +    T +
Sbjct: 197 LLRYGVVVSVDSCNLFLSRLSCN-----FEGIK---IAVKVFEEFPELGVCWN----TVS 244

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N VL+    LGK ++   L  QM + G  PDV++Y V++    R      ++ +++ + 
Sbjct: 245 CNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELK 304

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+      + +++      G++  AE +++ MR+       ++    +  +     G+
Sbjct: 305 GKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFC--KLGN 362

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                ++F+++    I              P+   YT+++ G    G++ +   M   M 
Sbjct: 363 VSAACKLFDEMRRKKI-------------VPDIVTYTSVIHGICKSGKMVEAREMFNEML 409

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD VTYT ++    KAG M  A  V  +M + G+  N +TY  L  G C+  
Sbjct: 410 VK---GLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNG 466

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID A ELL EM+    ++P+V +YN +++G   I +    +    EM   G  P  I+Y
Sbjct: 467 EIDVANELLHEMSRKG-LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITY 525

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTLM A+    +   A+++   ML + R++  +V +N+L+ G+C  G++E+ +R+IE M 
Sbjct: 526 TTLMDAYCKMGEMAKAHELLRIML-NKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWML 584

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           E G  PN  T+ SL     +         ++K + +R      GV  DS+
Sbjct: 585 EKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR------GVMPDSN 628



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 199/438 (45%), Gaps = 35/438 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  V++    +G+  K L+L D++   G KPD   YN +I L  +         +
Sbjct: 275 PDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQL 334

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + + G+      + ++++ +   G++  A  +   MR  R+ +   I       +  
Sbjct: 335 LRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMR--RKKIVPDIVTYTSVIHGI 392

Query: 176 ENEGDDDDDDEVFEKLLPNSINP----------------------SSEPPLLPKTFAPNS 213
              G   +  E+F ++L   + P                      S    ++ K   PN 
Sbjct: 393 CKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNV 452

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YT L  G    G +     +L  M R+      P+  TY T+V+ L K G++++  ++
Sbjct: 453 VTYTALADGLCKNGEIDVANELLHEMSRK---GLQPNVYTYNTIVNGLCKIGNIEQTVKL 509

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           + EM   G   + ITY  L+  YC+  ++ KA ELLR M +  +++P +V++N+L++GF 
Sbjct: 510 MEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNK-RLQPTLVTFNVLMNGFC 568

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           +             M  +GI P   ++ +LMK + + +  +   +++  M  D  V  D 
Sbjct: 569 MSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAM-HDRGVMPDS 627

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             +N+L++G+C+   ++EA  + + M E G+    ATY +L  G    +K  EA  L++E
Sbjct: 628 NTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEE 687

Query: 454 IKERCEVKKEGVNADSDL 471
           +      +K G+ A+ D+
Sbjct: 688 M------RKHGLVAEKDI 699



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 160/337 (47%), Gaps = 23/337 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   P+  IY  ++      G V +  ++L  MR+       PD+V YTTV+S   K G+
Sbjct: 306 KGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKW---GVFPDNVVYTTVISGFCKLGN 362

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A ++  EM R  +  + +TY  ++ G C+  ++ +A+E+  EM     +EPD V+Y 
Sbjct: 363 VSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG-LEPDEVTYT 421

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LIDG+    +   A +  N+M  +G+ P  ++YT L      + +  +AN++  EM R 
Sbjct: 422 ALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRK 481

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             ++ ++  +N +V G C++G +E+  +++E M   GFYP+  TY +L +      K G 
Sbjct: 482 G-LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYC---KMG- 536

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
                 E+ +  E+ +  +N        L+P     + L +    +        ++  M 
Sbjct: 537 ------EMAKAHELLRIMLNKR------LQPTLVTFNVLMNGFCMSGMLEDGERLIEWML 584

Query: 507 EHGIPPNKTKYKKIYVE--MHSRMFTSKHASQARQDR 541
           E GI PN T +  +  +  + + M  +    +A  DR
Sbjct: 585 EKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR 621



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 159/381 (41%), Gaps = 39/381 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P    ++TV+S     G+     + KLFD   +  RK   PDIV+        
Sbjct: 338 MRKWGVFPDNVVYTTVISGFCKLGNVSA--ACKLFD---EMRRKKIVPDIVT-------- 384

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y +V++     GK  +  ++F++M   G +PD +TY  +I    +A        V  +++
Sbjct: 385 YTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMV 444

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-----------DVCKI---- 164
           + G+T  + T+ +L       G++++A  ++  M R+G +            +CKI    
Sbjct: 445 QKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIE 504

Query: 165 -----IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
                + E+DL  +  +        D  + K+   +        +L K   P    +  L
Sbjct: 505 QTVKLMEEMDLAGFYPDTITYTTLMD-AYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVL 563

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           M G+   G + D  R++  M    +    P+  T+ +++       +M    ++   M  
Sbjct: 564 MNGFCMSGMLEDGERLIEWML---EKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHD 620

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            GV  +  TYNIL+KG+C+   + +A  L +EM +         +Y+ LI GF       
Sbjct: 621 RGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKG-YSVTAATYDALIRGFYKRKKFV 679

Query: 340 GALTFFNEMRARGIAPTKISY 360
            A   F EMR  G+   K  Y
Sbjct: 680 EARKLFEEMRKHGLVAEKDIY 700



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V  E   +GV  N ++ NI+L   CQ  ++ +A  LL +M D     PDVVSY +++
Sbjct: 226 AVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNF-PDVVSYGVVV 284

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G+  I +    L   +E++ +G+ P +  Y  ++     + +   A ++   M R   V
Sbjct: 285 SGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGM-RKWGV 343

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D V +  ++ G+C++G V  A ++ + M+     P++ TY S+ +GI  + K  EA  
Sbjct: 344 FPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEARE 403

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           ++ E+                L   L+PDE    AL D   +A   ++A  +   M + G
Sbjct: 404 MFNEM----------------LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKG 447

Query: 510 IPPNKTKYKKI 520
           + PN   Y  +
Sbjct: 448 LTPNVVTYTAL 458



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 131/335 (39%), Gaps = 77/335 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+V  ++ +   L  +G+          DV  + + + S   +    +P+   
Sbjct: 443 MVQKGLTPNVVTYTALADGLCKNGE---------IDVANELLHEMSRKGL----QPNVYT 489

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI----KLCARASRKHLLVFVL 116
           YN ++N    +G  ++ ++L ++M   G  PD +TY  ++    K+   A    LL  +L
Sbjct: 490 YNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIML 549

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            + L+      + TF  L+  +   G LE  E +++ M E                    
Sbjct: 550 NKRLQPT----LVTFNVLMNGFCMSGMLEDGERLIEWMLE-------------------- 585

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                         K   PN+  + +LMK Y  +  +  T  + 
Sbjct: 586 ------------------------------KGIMPNATTFNSLMKQYCIKNNMRATTEIY 615

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            AM    D    PD  TY  ++    KA +M  A  +  EM   G      TY+ L++G+
Sbjct: 616 KAMH---DRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGF 672

Query: 297 CQQLQIDKAKELLREMADDAKI-EPDVVSYNILID 330
            ++ +  +A++L  EM     + E D+  Y+I +D
Sbjct: 673 YKRKKFVEARKLFEEMRKHGLVAEKDI--YDIFVD 705



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 131/301 (43%), Gaps = 55/301 (18%)

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + +    + Q     HP   +   VV   V +  +  A++++ E               
Sbjct: 96  VLNLFNWAKSQSQQQFHPTLESLCIVVHLSVASNDIQTAKRLVFE--------------- 140

Query: 292 LLKGYCQQLQIDKAK------ELLREMADDAKIEPDV--VSYNILI-DGFILIDDSAGAL 342
               +C + +ID +K      E+L     D    P V  + + +L+ +GF+L      A 
Sbjct: 141 ----FCAKPKIDVSKSFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFVL-----EAQ 191

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQP-KLANKVFDEMLRDPRVKV--DIVAWNML 399
             F+++   G+  +  S    +   + + +  K+A KVF+E    P + V  + V+ N++
Sbjct: 192 KLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEF---PELGVCWNTVSCNIV 248

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           +   C++G V EA  ++ +M + G +P+V +YG + +G     + GE   L K +K   E
Sbjct: 249 LHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYC---RIGE---LDKVLKLVDE 302

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
           +K +G          LKPDE + + +  +  +     +A +++  M + G+ P+   Y  
Sbjct: 303 LKGKG----------LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTT 352

Query: 520 I 520
           +
Sbjct: 353 V 353


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 175/379 (46%), Gaps = 55/379 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  +++   ++G+ +K +QL  +M   G KP++ TY+ +I L  ++ +      V
Sbjct: 143 PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKV 202

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +++ G+      + +L+  +   G+ + A  +   M E R  V              
Sbjct: 203 LREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEM-EAREIV-------------- 247

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              P+S  ++ L+ G    G+V +  ++
Sbjct: 248 -----------------------------------PDSIAFSALICGLSGSGKVVEADKL 272

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M ++      PD VTYT ++    K G M +A  +  +M +IG+  N +TY  L  G
Sbjct: 273 FNEMIKK---GFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADG 329

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  ++D A ELL EM     ++ ++ +YN +++G     +   A+    EM+  G+ P
Sbjct: 330 LCKSGELDTANELLHEMCRKG-LQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHP 388

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+YTTLM A+  + +   A ++  EML D  ++  +V +N+L+ G C  G +E+ +R+
Sbjct: 389 DTITYTTLMDAYYKTGEMVKARELLREML-DRGLQPTVVTFNVLMNGLCMSGKLEDGERL 447

Query: 416 IERMKENGFYPNVATYGSL 434
           ++ M E G  PN ATY S+
Sbjct: 448 LKWMLEKGIMPNAATYNSI 466



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 159/321 (49%), Gaps = 23/321 (7%)

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
           SE P L   +  N+  Y  LM      G++ +   +L    R E     PD V+YTT++ 
Sbjct: 99  SEFPQLGVCW--NTESYNILMNSLFRLGKIREAHHLL---MRMEFKGCIPDVVSYTTIID 153

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
                G + +  Q++ EM   G+  N  TY+ ++   C+  ++ + +++LREM     + 
Sbjct: 154 GYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRG-VF 212

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD V Y  LIDGF  + ++  A   F+EM AR I P  I+++ L+   + S +   A+K+
Sbjct: 213 PDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKL 272

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F+EM++    + D V +  L++GYC++G +++A  +  +M + G  PNV TY +LA+G+ 
Sbjct: 273 FNEMIKKG-FEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLC 331

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
              K GE     + + E C                L+ +    + + +   +A    +A+
Sbjct: 332 ---KSGELDTANELLHEMCR-------------KGLQLNISTYNTIVNGLCKAGNILQAV 375

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
           +++  M+E G+ P+   Y  +
Sbjct: 376 KLMEEMKEAGLHPDTITYTTL 396



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 21/314 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   PN   Y++++      G+V +  ++L  M ++      PDHV YTT++    K G+
Sbjct: 174 KGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKR---GVFPDHVIYTTLIDGFCKLGN 230

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
              A ++ +EM    +  + I ++ L+ G     ++ +A +L  EM      EPD V+Y 
Sbjct: 231 TQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG-FEPDEVTYT 289

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LIDG+  + +   A    N+M   G+ P  ++YT L      S +   AN++  EM R 
Sbjct: 290 ALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRK 349

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             ++++I  +N +V G C+ G + +A +++E MKE G +P+  TY +L +      K GE
Sbjct: 350 G-LQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAY---YKTGE 405

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
                  +K R E+ +E +  D  L P +     L++ L   C+          ++  M 
Sbjct: 406 M------VKAR-ELLREML--DRGLQPTVVTFNVLMNGL---CMSGK-LEDGERLLKWML 452

Query: 507 EHGIPPNKTKYKKI 520
           E GI PN   Y  I
Sbjct: 453 EKGIMPNAATYNSI 466



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 190/431 (44%), Gaps = 68/431 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P    ++T++      G+     + KLF  +  R       +IV    PD+ A
Sbjct: 206 MMKRGVFPDHVIYTTLIDGFCKLGNTQA--AYKLFSEMEAR-------EIV----PDSIA 252

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++A++   +  GK  +  +LF++M + G +PD +TY  +I    +        F+  +++
Sbjct: 253 FSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMV 312

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           ++G+T  + T+ +L       G+L+ A  ++  M       C+                 
Sbjct: 313 QIGLTPNVVTYTALADGLCKSGELDTANELLHEM-------CR----------------- 348

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K    N   Y T++ G    G +   V+++  M+
Sbjct: 349 --------------------------KGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMK 382

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +   HPD +TYTT++ A  K G M +AR++L EM   G+    +T+N+L+ G C   
Sbjct: 383 ---EAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSG 439

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++  + LL+ M +   I P+  +YN ++  + + ++   +   +  M A+G+ P   +Y
Sbjct: 440 KLEDGERLLKWMLEKG-IMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTY 498

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+K    +   K A  +  EM+ + R  +   ++N L++G+ +   + EA+++ E M+
Sbjct: 499 NILIKGHCKARNMKEAWFLHKEMV-EKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMR 557

Query: 421 ENGFYPNVATY 431
             G   +   Y
Sbjct: 558 REGLVASAEIY 568



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 20/267 (7%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           Y T +S+  K   +    +V +E  ++GV  N  +YNIL+    +  +I +A  LL  M 
Sbjct: 80  YLTCLSS--KRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRME 137

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
               I PDVVSY  +IDG+  + +    +    EM+ +G+ P   +Y++++     S + 
Sbjct: 138 FKGCI-PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKV 196

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
               KV  EM++   V  D V +  L++G+C++G  + A ++   M+     P+   + +
Sbjct: 197 VEGEKVLREMMKRG-VFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSA 255

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L  G+S + K  EA  L+ E+     +KK             +PDE    AL D   +  
Sbjct: 256 LICGLSGSGKVVEADKLFNEM-----IKK-----------GFEPDEVTYTALIDGYCKLG 299

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKI 520
             +KA  +   M + G+ PN   Y  +
Sbjct: 300 EMKKAFFLHNQMVQIGLTPNVVTYTAL 326


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 207/454 (45%), Gaps = 36/454 (7%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           +P   +++TV+  L   GD    E++ +   + K   + S         PD  ++N V++
Sbjct: 192 VPDAISYNTVIKSLC--GDSRSQEALDMVQRMAKEGGRCS---------PDVVSFNTVIH 240

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                G+  K   LF++M + G  PDV TYN ++    +A       FVL ++++ G+  
Sbjct: 241 GFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEP 300

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE--NEGDDDDD 184
              T+ +++  Y   G  + +  + + M         I   +    + S     G   D 
Sbjct: 301 DGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGL----IPDTVTFSSFMSSLCKHGRSKDA 356

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
           +E+F+              +  K   P+   Y+ L+ GY  EGR +D   +  +M    D
Sbjct: 357 EEIFQY-------------MTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSM---AD 400

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
                +      ++SA  K G MD A  V  EM   GV  N +TY+ L+  +C+  ++  
Sbjct: 401 KGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLAD 460

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTTL 363
           A E   +M     IEP+   Y+ LI GF +  D   A  F +EM ++G+  P  + ++++
Sbjct: 461 AMEKFSQMI-SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSI 519

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           + +  +  +   A  VF+ ++     +  IV +N L++GYC +G +E+A  +++ M   G
Sbjct: 520 IHSLCIEGRVMDAQDVFNLVIHIGD-RPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVG 578

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             P+V T  +L +G   + K  + L+L++E+  +
Sbjct: 579 IEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHK 612



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 191/462 (41%), Gaps = 81/462 (17%)

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKP-----DVLTYNVMIKLCARASRKHLLVFVLERILE 121
           +C+N   P   L LF+++    A P      V TY +++  C RA R  L    + R+L 
Sbjct: 95  SCSN--GPALVLALFNRICREEAGPRVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLR 152

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+                 G ++ A T ++ +   +R                      
Sbjct: 153 AGLKT---------------GTIQ-ATTFLKCLCHAKRT--------------------- 175

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
              DE  + LL    +  SE   +P   +     Y T++K    + R  + + M+  M +
Sbjct: 176 ---DEAVDVLL----HRMSELSCVPDAIS-----YNTVIKSLCGDSRSQEALDMVQRMAK 223

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +    S PD V++ TV+    K G + +A  +  EM + GV  +  TYN ++   C+   
Sbjct: 224 EGGRCS-PDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARA 282

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +DKA+ +LR+M D   +EPD V+YN +I G+        +   F +M ++G+ P  ++++
Sbjct: 283 MDKAEFVLRQMVDKG-VEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFS 341

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           + M +     + K A ++F  M     +  DIV++++L+ GY   G   +   +   M +
Sbjct: 342 SFMSSLCKHGRSKDAEEIFQYMTTKGHMP-DIVSYSILLHGYATEGRFADMNNLFHSMAD 400

Query: 422 NGFYPNVATYGSLANGISLARKPG---EALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
            G   N      L   IS   K G   EA+L++ E+      + +GV          +P+
Sbjct: 401 KGIVSNCHCINIL---ISAHAKRGMMDEAMLVFTEM------QGQGV----------RPN 441

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 L     R      A+E  + M   GI PN   Y  +
Sbjct: 442 VVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSL 483



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 165/418 (39%), Gaps = 85/418 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G++P + ++S ++   A  G    + ++             +D  IVS+       
Sbjct: 363 MTTKGHMPDIVSYSILLHGYATEGRFADMNNL---------FHSMADKGIVSNCH----C 409

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N +++A A  G   + + +F +M   G +P+V+TY+ +I    R  R    +    +++
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREG--RRDVC---KIIRELDLEDYS 174
            +GI      + SL+  +   GDL  A E I + M +G  R ++     II  L +E   
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIE--- 526

Query: 175 SENEGDDDDDDEVFEKLLP----------NS-INPSSEPPLLPKTFA-----------PN 212
               G   D  +VF  ++           NS I+       + K F            P+
Sbjct: 527 ----GRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPD 582

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
                TL+ GY   G++ D + +   M  ++     P  VTY  V+  L++AG    A++
Sbjct: 583 VVTNNTLVSGYCKSGKIDDGLILFREMLHKK---VKPTTVTYNIVLDGLLRAGRTSAAKK 639

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL----------------------- 309
           +  EM   G   +  TY ILLKG C+    D+A  L                        
Sbjct: 640 MFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALY 699

Query: 310 ----REMADD-------AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
               RE A+D       + + P+V +Y ++I   +       A T F+ M   G AP+
Sbjct: 700 KVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPS 757


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 185/406 (45%), Gaps = 28/406 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  A+N  LN      + +  L+LF  M   G  PDV++Y ++I     A R      V
Sbjct: 117 PDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKV 176

Query: 116 LERILEMGITLCMTTFQSLVAAYVGF---GDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             R+++ G++     +++ VA  VG    G +++A  +V  + +G   V  ++    ++ 
Sbjct: 177 WRRLIDKGLS---PDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDG 233

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-FAPNSRIYTTLMKGYMNEGRVSD 231
           +      D     + F                + +T   P+   Y  L+     EG V +
Sbjct: 234 FCRMGRVDKAMKIKAF----------------MSRTGCVPDLVTYNILLNYCCEEGMVDE 277

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            VR++  M R   +   PD  +Y  ++    KA  +DRA  ++ E  +     + ++YN 
Sbjct: 278 AVRLVETMER---SGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNT 334

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++  +C+  +  K  EL  EM     I PD+V++NILID F+    +       +EM   
Sbjct: 335 VITAFCKARRTRKGYELFEEMCGKG-IRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKM 393

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            + P  I YT ++     + +  +A+ VF +M+ +  V  D++++N L+ G+C+   V +
Sbjct: 394 RVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENG-VNPDVISYNALLNGFCKTSRVMD 452

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           A  + + M+  G YP+  TY  +  G+   +K   A  +W ++ ER
Sbjct: 453 AMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMER 498



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 136/316 (43%), Gaps = 19/316 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K ++  YNA+++    +G+  K +++   M   G  PD++TYN+++  C         V 
Sbjct: 221 KVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVR 280

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++E +   G+   + ++  L+  +     ++ A  ++   R   + +C ++   +    +
Sbjct: 281 LVETMERSGVEPDLYSYNELLKGFCKANMVDRAH-LMMVERMQTKGMCDVV-SYNTVITA 338

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                      E+FE++    I              P+   +  L+  ++ EG      +
Sbjct: 339 FCKARRTRKGYELFEEMCGKGIR-------------PDMVTFNILIDAFLREGSTHVVKK 385

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M +       PD + YT VV  L K G +D A  V  +M   GV  + I+YN LL 
Sbjct: 386 LLDEMTKMR---VLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLN 442

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C+  ++  A  L  EM     + PD V+Y +++ G I     + A   +++M  RG  
Sbjct: 443 GFCKTSRVMDAMHLFDEMQSKG-LYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFT 501

Query: 355 PTKISYTTLMKAFALS 370
             +    TL+ A   S
Sbjct: 502 LNRHLSETLVNAIQSS 517



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 118/308 (38%), Gaps = 57/308 (18%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTR-----IGVPANR-------------------- 286
           + Y + +S LVKAG +++A  +  +MT        V  NR                    
Sbjct: 11  LAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRR 70

Query: 287 -----------ITYNILLKGYC---QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
                       TY+  +   C     + +     LL +M D     PD+ ++N  ++  
Sbjct: 71  HVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDM-DSLGFVPDIWAFNTYLNLL 129

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
              +    AL  F+ M ++G  P  +SYT ++ A   + +   A KV+  ++ D  +  D
Sbjct: 130 CRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLI-DKGLSPD 188

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
             A   LV G C  G V+ A  ++  + + G   N   Y +L +G     +  +A+    
Sbjct: 189 YKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAM---- 244

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
             K +  + + G            PD    + L + C       +A+ +V  ME  G+ P
Sbjct: 245 --KIKAFMSRTGC----------VPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEP 292

Query: 513 NKTKYKKI 520
           +   Y ++
Sbjct: 293 DLYSYNEL 300



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP    ++ VV  L  +G      SV            F D  + +   PD  +YNA+LN
Sbjct: 396 LPDCIFYTAVVDHLCKNGKVDVAHSV------------FRDM-VENGVNPDVISYNALLN 442

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                 +    + LFD+M   G  PD +TY +++    R  +  L   V ++++E G TL
Sbjct: 443 GFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTL 502

Query: 127 CMTTFQSLVAA 137
                ++LV A
Sbjct: 503 NRHLSETLVNA 513


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 189/439 (43%), Gaps = 53/439 (12%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +  P   +YNA++N     G   +  +++ +M +   + DV TY + IK   R  R +  
Sbjct: 185 NCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAA 244

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           + +L  +  +G       + ++V  +  FGD + A  +   M E    +C  +   +   
Sbjct: 245 LRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECC--LCPDVTTFNKLV 302

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           ++   +G   + + +F+K+L   +              PN   +   ++G   EG +   
Sbjct: 303 HALCKKGFVLESERLFDKVLKRGV-------------CPNLFTFNIFIQGLCKEGSLDRA 349

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           VR+LG + R+      PD VTY TV+  L +   +  A + L +M   G   N  TYN +
Sbjct: 350 VRLLGCVSRE---GLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSI 406

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + GYC++  +  A  +L++ A     +PD  +Y  L++GF    D   A+  F +   +G
Sbjct: 407 IDGYCKKGMVVDANRILKD-AVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKG 465

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEM------------------------LRDPR 388
           + P+ I Y TL+K          A ++ +EM                        L D  
Sbjct: 466 LRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDAN 525

Query: 389 VKV----------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
             +          DI  +N LV+GYCR   ++ A  ++ RM   G  P+V TY +L NG+
Sbjct: 526 HLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGL 585

Query: 439 SLARKPGEALLLWKEIKER 457
               K  E + ++K + E+
Sbjct: 586 CKTAKSEEVMEIFKAMTEK 604



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 139/613 (22%), Positives = 251/613 (40%), Gaps = 86/613 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G   +  A+ TVV+     GD+              R R+  D  +     PD   +N +
Sbjct: 255 GCFSNAVAYCTVVTGFYEFGDN-------------DRARELFDEMLECCLCPDVTTFNKL 301

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           ++A    G   +  +LFD++ + G  P++ T+N+ I+ LC   S     V +L  +   G
Sbjct: 302 VHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDR-AVRLLGCVSREG 360

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +   + T+ +++        +  AE  +  M  G  +         ++ Y  +    D +
Sbjct: 361 LRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDAN 420

Query: 184 ---DDEVFEKLLP---------NSINPSSEPPL--------LPKTFAPNSRIYTTLMKGY 223
               D VF+   P         N      +P          L K   P+  +Y TL+KG 
Sbjct: 421 RILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGL 480

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
             +G +   ++++  M    +    PD  TY  +++ L K G +  A  ++ +    G  
Sbjct: 481 CQQGLILPALQLMNEM---AEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCI 537

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            +  TYN L+ GYC+QL++D A EL+  M     + PDV++YN L++G      S   + 
Sbjct: 538 PDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQG-MTPDVITYNTLLNGLCKTAKSEEVME 596

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
            F  M  +G AP  I+Y T++++   S +   A  +  EM +   +  D+V++  L+ G+
Sbjct: 597 IFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEM-KSKGLTPDVVSFGTLITGF 655

Query: 404 CRMGLVEEAKRIIERM-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CE-- 459
           C++G ++ A  +   M K+       ATY  + +  S       AL L+ E+K+  C+  
Sbjct: 656 CKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPD 715

Query: 460 -----------VKKEGVNA---------DSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
                       K   VN          +    P L     +L+ L   CV     ++A+
Sbjct: 716 NYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCL---CVEHK-VQEAV 771

Query: 500 EIVACMEEHGIPPNKTKY-----KKIYVEMHS-----------RMFTSKHASQARQDRRR 543
            I+  M +  I P+         KK ++  H+           ++   KH +      RR
Sbjct: 772 GIIHLMVQKDIVPDTVNTIFEADKKGHITYHAYEFLYDGVRDKKILKKKHPNW--NSLRR 829

Query: 544 ERKRAAEAFKFWL 556
           E + +A+ + FW 
Sbjct: 830 EPRSSADVWCFWF 842



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/323 (19%), Positives = 128/323 (39%), Gaps = 66/323 (20%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           +  G +P +  ++T+V        DG    +KL D  ++ V +     +     PD   Y
Sbjct: 532 ITKGCIPDIFTYNTLV--------DGYCRQLKL-DSAIELVNRMWSQGMT----PDVITY 578

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N +LN      K ++ +++F  M E G  P+++TYN +I+    + + +  V +L  +  
Sbjct: 579 NTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKS 638

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+T  + +F +L+  +   GDL+ A  + + M E + DV                    
Sbjct: 639 KGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGM-EKQYDV-------------------- 677

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                                       +  +  Y  ++  +  +  +   +R+   M++
Sbjct: 678 ----------------------------SHTTATYNIIISAFSEQLNMKMALRLFSEMKK 709

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
              N   PD+ TY  ++    K G++++  + L E    G   +  T+  +L   C + +
Sbjct: 710 ---NGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHK 766

Query: 302 IDKAKELLREMADDAKIEPDVVS 324
           + +A  ++  M     I PD V+
Sbjct: 767 VQEAVGIIHLMV-QKDIVPDTVN 788



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 121/325 (37%), Gaps = 55/325 (16%)

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYN 290
            +R L  +++ +    H    TY +++  L   G  +    +L+EM + +        Y 
Sbjct: 101 CIRNLQLIKKTKQGFKHT-LFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYV 159

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN------------------------ 326
             ++ Y ++ +I +A +    M D    +P V SYN                        
Sbjct: 160 EAMRFYGRKGKIQEAVDTFERM-DLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKD 218

Query: 327 -----------ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
                      I I  F        AL     M   G     ++Y T++  F        
Sbjct: 219 KKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDR 278

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A ++FDEML +  +  D+  +N LV   C+ G V E++R+ +++ + G  PN+ T+    
Sbjct: 279 ARELFDEML-ECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFI 337

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
            G+    K G    L + ++    V +EG          L+PD    + +     R +  
Sbjct: 338 QGLC---KEGS---LDRAVRLLGCVSREG----------LRPDVVTYNTVICGLCRKSRV 381

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            +A E +  M   G  PN   Y  I
Sbjct: 382 VEAEECLHKMVNGGFEPNDFTYNSI 406


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 204/463 (44%), Gaps = 40/463 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D +P   +YNA+++   + G   +  +++ +M + G  PDV ++ + +K   R SR H  
Sbjct: 106 DCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAA 165

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYV--GFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
           + +L  +   G  + +  + ++V  +    F D E  E   + +  G   V   +   + 
Sbjct: 166 LRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKD-EGYELFGKMLASG---VSLCLSTFNK 221

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             +    +GD  + +++ +K++   +              PN   Y   ++G   +G + 
Sbjct: 222 LLHVLCKKGDVKECEKLLDKVIKRGV-------------LPNLFTYNFFIQGLCQKGELD 268

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             VRM+G   R  D    PD VTY  ++  L K      A   L ++   G+  +  TYN
Sbjct: 269 AAVRMVG---RLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYN 325

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ GYC+   +  A+ +L     +  + PD  +Y  LIDG     ++  AL  FNE   
Sbjct: 326 TLIAGYCKGGMVQLAERILVNAVFNGFV-PDEFTYRSLIDGLCHEGETNRALALFNEALG 384

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +GI P  I Y TL+K  +       A ++  EM     +  ++  +N+LV G C+MG V 
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIP-EVQTFNILVNGLCKMGCVS 443

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A  +++ M   G++P++ T+  L +G S   K   AL    EI +        V  D+ 
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL----EILD--------VMMDNG 491

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           + P +     LL+ L     + + +   +E    M E G  PN
Sbjct: 492 VDPDVYTYNSLLNGLC----KTSKYEDVMETYKTMVEKGCAPN 530



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 190/441 (43%), Gaps = 65/441 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y ++++   + G+  + L LF++    G KP+V+ YN +IK     S + L++  
Sbjct: 354 PDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIK---GLSNQGLILEA 410

Query: 116 LERILEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            +   EM   G+   + TF  LV      G +  A+ +V+ M                  
Sbjct: 411 AQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM------------------ 452

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                                           + K + P+   +  L+ GY  + ++ + 
Sbjct: 453 --------------------------------ISKGYFPDIFTFNILIHGYSTQLKMENA 480

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +L  M    DN   PD  TY ++++ L K    +   +    M   G   N  T+NIL
Sbjct: 481 LEILDVMM---DNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-AR 351
           L+  C+  ++DKA  LL EM + + + PD V++  LIDGF    D  GA T F +M    
Sbjct: 538 LESLCRYHKLDKALGLLEEMKNKS-VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVY 596

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            ++ +  +Y  ++ AF       +A K+F EM+ D  +  D   + ++V+G+C+ G V+ 
Sbjct: 597 MVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMV-DRCLGPDGYTYRLMVDGFCKTGNVDL 655

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA--DS 469
             + +  M ENGF P++ T G + N + +  +  EA  +   + ++  V  E VN   D 
Sbjct: 656 GYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLV-PEAVNTIFDH 714

Query: 470 DLPPPLKPDEELLDALADICV 490
           D      P   L D L   C+
Sbjct: 715 DKKEVAAPKLVLEDLLKKSCI 735



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 211/461 (45%), Gaps = 38/461 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML SG    +  ++ ++  L   GD    E  KL D V+KR              P+   
Sbjct: 207 MLASGVSLCLSTFNKLLHVLCKKGDVKECE--KLLDKVIKR-----------GVLPNLFT 253

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YN  +      G+    +++  ++ + G KPDV+TYN +I  LC  +  +   V+ L ++
Sbjct: 254 YNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVY-LGKL 312

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETI-VQAMREGRRDVCKIIRELDLEDYSSENE 178
           +  G+     T+ +L+A Y   G +++AE I V A+  G        R L ++     +E
Sbjct: 313 VNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSL-IDGLC--HE 369

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G+ +    +F + L   I              PN  +Y TL+KG  N+G + +  ++   
Sbjct: 370 GETNRALALFNEALGKGIK-------------PNVILYNTLIKGLSNQGLILEAAQLASE 416

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      P+  T+  +V+ L K G +  A  ++  M   G   +  T+NIL+ GY  
Sbjct: 417 MSEK---GLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYST 473

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           QL+++ A E+L  M D+  ++PDV +YN L++G          +  +  M  +G AP   
Sbjct: 474 QLKMENALEILDVMMDNG-VDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLF 532

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++  L+++     +   A  + +EM ++  V  D V +  L++G+C+ G ++ A  +  +
Sbjct: 533 TFNILLESLCRYHKLDKALGLLEEM-KNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591

Query: 419 MKENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERC 458
           M+E      +  TY  + +  +       A  L++E+ +RC
Sbjct: 592 MEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 6/246 (2%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +Y   MK Y  +G+V + V +     R +     P   +Y  ++S LV +G  D+A +V 
Sbjct: 78  VYVGAMKNYGRKGKVQEAVNVF---ERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVY 134

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M   G+  +  ++ I +K +C+  +   A  LL  M+     E +VV+Y  ++ GF  
Sbjct: 135 MRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQG-CEMNVVAYCTVVGGFYE 193

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            +        F +M A G++    ++  L+         K   K+ D++++   V  ++ 
Sbjct: 194 ENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRG-VLPNLF 252

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-LLLWKE 453
            +N  ++G C+ G ++ A R++ R+ + G  P+V TY  L  G+    K  EA + L K 
Sbjct: 253 TYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKL 312

Query: 454 IKERCE 459
           + E  E
Sbjct: 313 VNEGLE 318


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 198/468 (42%), Gaps = 72/468 (15%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP-DVLTYNVMIKLCARASRKH 110
           + ++PDT A+N  + AC   G   + + +  +M   GA P +  +YNV+I    RA R  
Sbjct: 21  AGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGG 80

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             V V + + E  +     T+ +++  ++  GDLE    +   M      VC  ++    
Sbjct: 81  DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM------VCHGLK---- 130

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                                   PN+  Y  L+ G    GR+ 
Sbjct: 131 ----------------------------------------PNAITYNVLLSGLCRAGRMG 150

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +T  +L  M  Q+     PD  TY+ +   L + G       +  +  + GV     T +
Sbjct: 151 ETSALLDEMASQK---MVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCS 207

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           ILL G C+  ++  A+E+L+ + + A + P  V YN LI+G+    +  GA + F +M++
Sbjct: 208 ILLNGLCKDGKVSIAEEVLQSLVN-AGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 266

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           R I P  I+Y  L+     + +   A  +  EM +D  V   +  +N L++ Y R G +E
Sbjct: 267 RHIKPDHITYNALINGLCKAERITNAQDLLMEM-QDNGVNPTVETFNTLIDAYGRTGQLE 325

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +   ++  M+ENG  PNV +YGS+ N      K  EA+ +  ++  +             
Sbjct: 326 KCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK------------- 372

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
               + P+ ++ +A+ D  V      +A  +V  M+ +GI P+   Y 
Sbjct: 373 ---DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 417



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y  ++ G    GR  D V +   M  +   A  P+H+TY T++   +K G ++  
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTER---AVLPNHITYNTMIDGHIKGGDLEAG 117

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M   G+  N ITYN+LL G C+  ++ +   LL EMA   K+ PD  +Y+IL D
Sbjct: 118 FRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQ-KMVPDGFTYSILFD 176

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     DS   L+ F +    G+     + + L+       +  +A +V   ++    V 
Sbjct: 177 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 236

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             ++ +N L+ GYC+ G +E A     +MK     P+  TY +L NG+  A +   A  L
Sbjct: 237 TRVI-YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 295

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             E+++       GVN          P  E  + L D   R     K   +++ M+E+G+
Sbjct: 296 LMEMQD------NGVN----------PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 339

Query: 511 PPNKTKYKKI 520
            PN   Y  I
Sbjct: 340 KPNVVSYGSI 349



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 189/423 (44%), Gaps = 20/423 (4%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           +  D  +    KP+   YN +L+     G+  +   L D+M      PD  TY+++    
Sbjct: 119 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 178

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
           +R      ++ +  + L+ G+T+   T   L+      G + IAE ++Q++        +
Sbjct: 179 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 238

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           +I    +  Y    E          E         S+   +  +   P+   Y  L+ G 
Sbjct: 239 VIYNTLINGYCQTGE---------LEGAF------STFGQMKSRHIKPDHITYNALINGL 283

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
               R+++   +L  M   +DN  +P   T+ T++ A  + G +++   VL+EM   G+ 
Sbjct: 284 CKAERITNAQDLLMEM---QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 340

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N ++Y  ++  +C+  +I +A  +L +M     + P+   YN +ID ++    +  A  
Sbjct: 341 PNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK-DVLPNAQVYNAIIDAYVEHGPNDQAFI 399

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
              +M++ GI+P+ ++Y  L+K     SQ   A ++ +  L + R+  D V++N L+   
Sbjct: 400 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINS-LSNHRLIPDAVSYNTLISAC 458

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
           C  G +++A  + +RM + G    V TY  L +G+  A +  E   L++++ +   V   
Sbjct: 459 CYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSN 518

Query: 464 GVN 466
            ++
Sbjct: 519 AIH 521



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 145/352 (41%), Gaps = 55/352 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN ++N     G+ +     F QM     KPD +TYN +I    +A R      +
Sbjct: 236 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 295

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + + G+   + TF +L+ AY   G LE    ++  M+E                   
Sbjct: 296 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE------------------- 336

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              PN   Y +++  +   G++ + V +
Sbjct: 337 -------------------------------NGLKPNVVSYGSIVNAFCKNGKIPEAVAI 365

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++     P+   Y  ++ A V+ G  D+A  ++ +M   G+  + +TYN+L+KG
Sbjct: 366 LDDMFHKD---VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 422

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C Q QI +A+E++  +++  ++ PD VSYN LI       +   AL     M   GI  
Sbjct: 423 LCNQSQISEAEEIINSLSNH-RLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS 481

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           T  +Y  L+     + +      ++ +M+++  V  + +  N++VE Y + G
Sbjct: 482 TVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAI-HNIMVEAYSKYG 532



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 1/180 (0%)

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           AL+  G     R+    +   G   +   +N  ++       + +A  +LR M  D    
Sbjct: 1   ALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP 60

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+  SYN++I G         A+  F+EM  R + P  I+Y T++         +   ++
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            D+M+    +K + + +N+L+ G CR G + E   +++ M      P+  TY  L +G+S
Sbjct: 121 RDQMVCHG-LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 179



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YN +++AC   G   K L L  +MH++G K  V TY+ +I     A R + + ++
Sbjct: 446 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 505

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            +++++  +         +V AY  +G+   AE + + M + R +
Sbjct: 506 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 550


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 213/507 (42%), Gaps = 73/507 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V +++ ++  L   G  G  + +         +R  ++   V    PD  AYN V
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDL---------LRMMAEGGTVC--SPDVVAYNTV 227

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G   K   LF +M + G  PD++TY+ ++    +A         L +++  G+
Sbjct: 228 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 287

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+ +L+  Y   G  + A  + + MR  R+ +   +  L+    S    G   + 
Sbjct: 288 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR--RQSILPDVVALNTLMGSLCKYGKIKEA 345

Query: 185 DEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYTTLMKG 222
            +VF+ +     NP            +++  L+  T           AP    +  L+K 
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKA 405

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           Y N G +   + +   MR   D+   P  VTY TV++AL + G MD A +   +M   GV
Sbjct: 406 YANCGMLDKAMIIFNEMR---DHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGV 462

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------------------- 316
             ++  Y+ L++G+C    + KAKEL+ E+ ++                           
Sbjct: 463 VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522

Query: 317 --------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
                    + PD V YN+L+DG+ L+     AL  F+ M + GI P  + Y TL+  + 
Sbjct: 523 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC 582

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              +      +F EML+   +K   + +N++++G    G    AK     M E+G   N 
Sbjct: 583 KIGRIDEGLSLFREMLQKG-IKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNK 641

Query: 429 ATYGSLANGISLARKPGEALLLWKEIK 455
            TY  +  G+   R   EA+ L+KE++
Sbjct: 642 CTYSIVLRGLFKNRCFDEAIFLFKELR 668



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 195/468 (41%), Gaps = 72/468 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP    ++ ++   +++G     E+V++F    K +R+ S         PD  A
Sbjct: 282 MVNKGVLPDNWTYNNLIYGYSSTGQ--WKEAVRVF----KEMRRQS-------ILPDVVA 328

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++ +    GK K+   +FD M   G  PDV +Y +M+   A       +  + + +L
Sbjct: 329 LNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLML 388

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCKIIREL 168
             GI   + TF  L+ AY   G L+ A  I   MR+ G +            +C+I    
Sbjct: 389 GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRI---- 444

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP-PLLPKTFAPNSRIYTT--LMKGYMN 225
                     G  DD  E F +++   + P       L + F  +  +     L+   MN
Sbjct: 445 ----------GKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 494

Query: 226 EGRVSDTVRM------LGAMRRQEDNAS----------HPDHVTYTTVVSALVKAGSMDR 269
            G   D V        L  + R  D  +          HPD V Y  ++      G M++
Sbjct: 495 NGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEK 554

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V   M   G+  N + Y  L+ GYC+  +ID+   L REM     I+P  + YNI+I
Sbjct: 555 ALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKG-IKPSTILYNIII 613

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------ 383
           DG      +  A   F+EM   GIA  K +Y+ +++           N+ FDE       
Sbjct: 614 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL-------FKNRCFDEAIFLFKE 666

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           LR   VK+DI+  N ++ G  +   VEEAK +   +  +G  P   TY
Sbjct: 667 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTY 714



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 130/551 (23%), Positives = 222/551 (40%), Gaps = 106/551 (19%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 82  SAACGSGPALAVALFNRAASRAQ---GPRVLS---PTSYTYAILMDCCTRAHRPELALAF 135

Query: 81  FDQM---------------------------------H---EFGAKPDVLTYNVMIK-LC 103
           F Q+                                 H   E G  PDV +YN+++K LC
Sbjct: 136 FGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLC 195

Query: 104 ARASRKHLLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            +          L R++  G T+C   +  + +++  +   GD+  A             
Sbjct: 196 NQGKSGQ--ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKA------------- 240

Query: 161 VCKIIREL-------DLEDYSSE----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
            C + +E+       DL  YSS      +    D  E F + + N            K  
Sbjct: 241 -CDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN------------KGV 287

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P++  Y  L+ GY + G+  + VR+   MRRQ   +  PD V   T++ +L K G +  
Sbjct: 288 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQ---SILPDVVALNTLMGSLCKYGKIKE 344

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR V   M   G   +  +Y I+L GY  +  +    +L   M  D  I P + ++N+LI
Sbjct: 345 ARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG-IAPVICTFNVLI 403

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
             +        A+  FNEMR  G+ P  ++Y T++ A     +   A + F++M+ D  V
Sbjct: 404 KAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI-DQGV 462

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D  A++ L++G+C  G + +AK +I  +  NG   ++  +GS+ N +    +  +A  
Sbjct: 463 VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           ++                D  +   L PD  + + L D         KAL +   M   G
Sbjct: 523 IF----------------DLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 510 IPPNKTKYKKI 520
           I PN   Y  +
Sbjct: 567 IEPNVVGYGTL 577



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 164/404 (40%), Gaps = 39/404 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V +++ +++  A  G    V+   LFD+++                P    
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKG--CLVDMTDLFDLMLG-----------DGIAPVICT 398

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A AN G   K + +F++M + G KP V+TY  +I    R  +    +    +++
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----------DVCKIIREL 168
           + G+      +  L+  +   G L  A E I + M  G R           ++CK+ R +
Sbjct: 459 DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVM 518

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLM 220
           D ++            D V   +L +      +          ++     PN   Y TL+
Sbjct: 519 DAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 578

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY   GR+ + + +    R        P  + Y  ++  L +AG    A+    EMT  
Sbjct: 579 NGYCKIGRIDEGLSLF---REMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 635

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSA 339
           G+  N+ TY+I+L+G  +    D+A  L +E+ A + KI  D+++ N +I G        
Sbjct: 636 GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI--DIITLNTMIAGMFQTRRVE 693

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            A   F  +   G+ P  ++Y+ ++         + A  +F  M
Sbjct: 694 EAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSM 737


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 122/500 (24%), Positives = 215/500 (43%), Gaps = 84/500 (16%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D    N VLNA  + G   + L L   +  FG +PDV++YN ++K    A R   +  ++
Sbjct: 228 DVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELM 287

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           E ++ M     + TF +L++     G  E + E + Q +  G                  
Sbjct: 288 EEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG------------------ 329

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              P+ R+Y T++ G   EG +     +
Sbjct: 330 ---------------------------------CTPDIRMYATIIDGICKEGHLEVAHEI 356

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    R       P+ V Y T++  L  A   +   ++LAEM     P + +T+NIL+  
Sbjct: 357 L---NRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDF 413

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +CQ   +D+  ELL +M +   + PDV++Y  +I+GF    LID+   A+     M A G
Sbjct: 414 FCQNGLVDRVIELLEQMLEHGCM-PDVITYTTVINGFCKEGLIDE---AVMLLKSMTACG 469

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  ISYT ++K    + +   A  +  +M++     ++ + +N L+   C+ GLVE+A
Sbjct: 470 CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQ-GCPLNPITFNTLINFLCKKGLVEQA 528

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CE 459
             ++++M  NG  P++ +Y ++ +G+  A K  EAL L   +  +               
Sbjct: 529 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 588

Query: 460 VKKEG-VNA-----DSDLPPPLKPDEELLDA-LADICVRAAFFRKALEIVACMEEHGIPP 512
           + +EG +N      D+     ++ D  L +A ++ +C R    R A+E +A M   G  P
Sbjct: 589 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETER-AIEFLAYMVSSGCVP 647

Query: 513 NKTKYKKIYVEMHSRMFTSK 532
           N++ Y  +   + S  F  +
Sbjct: 648 NESTYTILIRGLASEGFVKE 667



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 195/430 (45%), Gaps = 25/430 (5%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +PD  +YNAVL       +     +L ++M      P+++T+N +I    R      + 
Sbjct: 260 CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVH 319

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDV 161
            VL +++E G T  +  + +++      G LE+A  I+  M                + +
Sbjct: 320 EVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGL 379

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C   R  + E+  +E    D   D+V   +L +    +            +L     P+ 
Sbjct: 380 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDV 439

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT++ G+  EG + + V +L +M         P+ ++YT V+  L  A     A  +
Sbjct: 440 ITYTTVINGFCKEGLIDEAVMLLKSMTA---CGCKPNTISYTIVLKGLCSAERWVDAEDL 496

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           +++M + G P N IT+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG  
Sbjct: 497 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLG 555

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  AL   N M  +G++P  I Y+++  A +   +     ++FD  ++D  ++ D 
Sbjct: 556 KAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN-IQDTTIRSDA 614

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N ++   C+ G  E A   +  M  +G  PN +TY  L  G++      EA  +  E
Sbjct: 615 VLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTE 674

Query: 454 IKERCEVKKE 463
           +  +  ++K 
Sbjct: 675 LCSKGALRKH 684



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 24/291 (8%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V RV +  +  +     PD   Y  V+N     G   + + L   M   G KP+ ++Y 
Sbjct: 419 LVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYT 478

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMRE 156
           +++K    A R      ++ ++++ G  L   TF +L+      G +E A E + Q +  
Sbjct: 479 IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN 538

Query: 157 GRRDVCKIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
           G           DL  YS+  +  G     DE  E LL   +N         K  +PN+ 
Sbjct: 539 GCSP--------DLISYSTVIDGLGKAGKTDEALE-LLNVMVN---------KGMSPNTI 580

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           IY+++      EGR++  ++M   +   +D     D V Y  V+S+L K G  +RA + L
Sbjct: 581 IYSSIASALSREGRINKVIQMFDNI---QDTTIRSDAVLYNAVISSLCKRGETERAIEFL 637

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           A M   G   N  TY IL++G   +  + +A+E+L E+     +   ++ +
Sbjct: 638 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALRKHLMKH 688



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 21/232 (9%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN ++ GYC+  Q++ A    R +A    + P+  +Y  ++         A AL   +EM
Sbjct: 130 YNAMVAGYCRAGQLESA----RRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEM 185

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RG AP    Y  +++A       + A +V ++ L      +D+   N+++   C  G 
Sbjct: 186 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLED-LHARGCALDVGNCNLVLNAICDQGS 244

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           V+EA  ++  +   G  P+V +Y ++  G+ +A++       W  ++   E+ +E V   
Sbjct: 245 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKR-------WGCVQ---ELMEEMVRMA 294

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              PP +     L+  L     R   F +  E++A M EHG  P+   Y  I
Sbjct: 295 C--PPNIVTFNTLISYLC----RNGLFERVHEVLAQMVEHGCTPDIRMYATI 340


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 205/482 (42%), Gaps = 70/482 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++NA    G  ++  +L D M   G KP V TYN +I    +  +      V
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +L++G++    T+  L+       ++  AE I   M                     
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPS------------------- 230

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-----------------FAPNSRIYTT 218
                        + ++P+ ++ S+   LL K                   AP++ IYT 
Sbjct: 231 -------------QGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTI 277

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G+   G +S+ +++   M  Q       D VTY T+++ L K   +  A ++  EMT
Sbjct: 278 LIGGFCRNGVMSEALKVRDEMLEQ---GCVLDVVTYNTILNGLCKEKMLSEADELFTEMT 334

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             GV  +  T+  L+ GY +   ++KA  L  EM     ++PDVV+YN LIDGF    + 
Sbjct: 335 ERGVFPDFYTFTTLINGYSKDGNMNKAVTLF-EMMIQRNLKPDVVTYNTLIDGFCKGSEM 393

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
                 +N+M +R I P  ISY  L+  +        A +++DEM+ +   +  I+  N 
Sbjct: 394 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV-EKGFEATIITCNT 452

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           +V+GYCR G   +A   +  M   G  P+  TY +L NG         A  L  +++   
Sbjct: 453 IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKME--- 509

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                    +S L P +     +L+  +    R    ++A  I+  M E G+ P+++ Y 
Sbjct: 510 ---------NSGLLPDVITYNVILNGFS----RQGRMQEAELIMLKMIERGVNPDRSTYT 556

Query: 519 KI 520
            +
Sbjct: 557 SL 558



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 24/269 (8%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
            +++  LVK G +D A ++  E+ R GV  N  T NI++   C+  +I+  K  L +M +
Sbjct: 66  NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM-E 124

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +  + PDVV+YN LI+ +        A    + M  +G+ P   +Y  ++     + +  
Sbjct: 125 EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 184

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A  V DEML+   +  D   +N+L+   CR   + +A+RI + M   G  P++ ++ +L
Sbjct: 185 RAKGVLDEMLK-IGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 243

Query: 435 ANGISLARKPG---EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
              I L  K G   +AL  ++++K                   L PD  +   L     R
Sbjct: 244 ---IGLLSKNGCLDQALKYFRDMKN----------------AGLAPDNVIYTILIGGFCR 284

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                +AL++   M E G   +   Y  I
Sbjct: 285 NGVMSEALKVRDEMLEQGCVLDVVTYNTI 313



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 45/379 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P + ++S ++  L+ +G           D  +K  R   +  +     PD   
Sbjct: 228 MPSQGVVPDLVSFSALIGLLSKNG---------CLDQALKYFRDMKNAGLA----PDNVI 274

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++      G   + L++ D+M E G   DV+TYN ++  LC    ++ +L    E  
Sbjct: 275 YTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLC----KEKMLSEADELF 330

Query: 120 LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYS 174
            EM   G+     TF +L+  Y   G++  A T+ + M  R  + DV      +D     
Sbjct: 331 TEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 390

Query: 175 SENEGDDDD-DDEVFEKLLPNSINPS------------SEP-----PLLPKTFAPNSRIY 216
           SE E  ++  +D +  ++ PN I+              SE       ++ K F       
Sbjct: 391 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 450

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            T++KGY   G        L  M  +      PD +TY T+++  +K  +MDRA  ++ +
Sbjct: 451 NTIVKGYCRAGNAVKADEFLSNMLLK---GIVPDGITYNTLINGFIKEENMDRAFALVNK 507

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  + ITYN++L G+ +Q ++ +A+ ++ +M +   + PD  +Y  LI+G +  +
Sbjct: 508 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG-VNPDRSTYTSLINGHVTQN 566

Query: 337 DSAGALTFFNEMRARGIAP 355
           +   A    +EM  RG  P
Sbjct: 567 NLKEAFRVHDEMLQRGFVP 585



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 20/238 (8%)

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
           +N + +++L++ Y Q  ++ +  E  R +     +   + + N L+ G + +     A  
Sbjct: 25  SNPLVFDLLVRTYVQARKLREGCEAFRVLKSKG-LCVSINACNSLLGGLVKVGWVDLAWE 83

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN-KVFDEMLRDPRVKVDIVAWNMLVEG 402
            + E+   G+      YT  +   AL    K+ N K F   + +  V  D+V +N L+  
Sbjct: 84  IYQEVVRSGVQVN--VYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINA 141

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
           YCR GL+EEA  +++ M   G  P V TY ++ NG+    K G+ L            + 
Sbjct: 142 YCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLC---KTGKYL------------RA 186

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +GV  D  L   + PD    + L   C R      A  I   M   G+ P+   +  +
Sbjct: 187 KGV-LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 243


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 194/434 (44%), Gaps = 54/434 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ VL+  A        + LF  M   G   D+ +YN++I    R SR  + + V
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
           + ++++ G    + T  SL+  +     +  A  +V  M E   R DV      +D    
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID---- 123

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            S   G  +D  E+F+++  + +               ++  Y +L+ G    GR SD  
Sbjct: 124 GSCKIGLVNDAVELFDRMERDGVRA-------------DAVTYNSLVAGLCCSGRWSDAA 170

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R++  M  ++     P+ +T+T V+   VK G    A ++  EMTR  V  +  TYN L+
Sbjct: 171 RLMRDMVMRD---IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 227

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C   ++D+AK++L  M     + PDVV+YN LI+GF            F EM  RG+
Sbjct: 228 NGLCMHGRVDEAKQMLDLMVTKGCL-PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL 286

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK----------------------- 390
               I+Y T+++ +  + +P  A ++F  M   P ++                       
Sbjct: 287 VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFE 346

Query: 391 --------VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
                   +DI  +N+++ G C++G VE+A  +   +   G  P+V +Y ++ +G    R
Sbjct: 347 NMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKR 406

Query: 443 KPGEALLLWKEIKE 456
           +  ++ LL+++++E
Sbjct: 407 QWDKSDLLYRKMQE 420



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 121/249 (48%), Gaps = 5/249 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           + P+    ++L+ G+    RV D + ++  M   E+    PD V Y T++    K G ++
Sbjct: 76  YEPDVVTVSSLINGFCQGNRVFDAIDLVSKM---EEMGFRPDVVIYNTIIDGSCKIGLVN 132

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A ++   M R GV A+ +TYN L+ G C   +   A  L+R+M     I P+V+++  +
Sbjct: 133 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVM-RDIVPNVITFTAV 191

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ID F+     + A+  + EM  R + P   +Y +L+    +  +   A ++ D M+    
Sbjct: 192 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 251

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +  D+V +N L+ G+C+   V+E  ++   M + G   +  TY ++  G   A +P  A 
Sbjct: 252 LP-DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 310

Query: 449 LLWKEIKER 457
            ++  +  R
Sbjct: 311 EIFSRMDSR 319



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 193/446 (43%), Gaps = 41/446 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++S  LP +  +S V+S++A S         K +D+V+           V     D  +
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKS---------KNYDLVISLFHHME----VCGIGHDLYS 47

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N      +    L +  +M +FG +PDV+T + +I    + +R    + ++ ++ 
Sbjct: 48  YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 107

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
           EMG    +  + +++      G +  A  +   M R+G R        L      S    
Sbjct: 108 EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWS 167

Query: 180 DDDD--DDEVFEKLLPNSINPSSEPPLLPK-----------------TFAPNSRIYTTLM 220
           D      D V   ++PN I  ++   +  K                    P+   Y +L+
Sbjct: 168 DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 227

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G    GRV +  +ML  M  +      PD VTY T+++   K+  +D   ++  EM + 
Sbjct: 228 NGLCMHGRVDEAKQMLDLMVTK---GCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 284

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  + ITYN +++GY Q  + D A+E+   M  D++  P++ +Y+IL+ G  +      
Sbjct: 285 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM--DSR--PNIRTYSILLYGLCMNWRVEK 340

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL  F  M+   I     +Y  ++         + A  +F   L    +K D+V++  ++
Sbjct: 341 ALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS-LSCKGLKPDVVSYTTMI 399

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYP 426
            G+CR    +++  +  +M+E+G  P
Sbjct: 400 SGFCRKRQWDKSDLLYRKMQEDGLLP 425



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R S  V  L  + +       PD VT +++++   +   +  A  ++++M  +G   + +
Sbjct: 57  RCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVV 116

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            YN ++ G C+   ++ A EL   M  D  +  D V+YN L+ G       + A     +
Sbjct: 117 IYNTIIDGSCKIGLVNDAVELFDRMERDG-VRADAVTYNSLVAGLCCSGRWSDAARLMRD 175

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYC 404
           M  R I P  I++T ++  F    +   A K+++EM R   DP    D+  +N L+ G C
Sbjct: 176 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDP----DVFTYNSLINGLC 231

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             G V+EAK++++ M   G  P+V TY +L NG   +++  E   L++E+ +R
Sbjct: 232 MHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 284



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 2/210 (0%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  V ++ V+S + K+ + D    +   M   G+  +  +YNI++   C+  +   A  +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           + +M      EPDVV+ + LI+GF   +    A+   ++M   G  P  + Y T++    
Sbjct: 68  VGKMMKFGY-EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 126

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                  A ++FD M RD  V+ D V +N LV G C  G   +A R++  M      PNV
Sbjct: 127 KIGLVNDAVELFDRMERDG-VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNV 185

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERC 458
            T+ ++ +      K  EA+ L++E+  RC
Sbjct: 186 ITFTAVIDVFVKEGKFSEAMKLYEEMTRRC 215


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 136/583 (23%), Positives = 256/583 (43%), Gaps = 89/583 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+   +ST+++ L    ++G V+     D++ + + K  +P + + + P TA 
Sbjct: 301 MVKEGCDPNSVTYSTLINGLC---NEGRVDEA--LDMLEEMIEKGIEPTVYTYTLPITAL 355

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
                     +   ++ ++L  +M + G +P+V TY  +I   +R  +  + + +  ++L
Sbjct: 356 --------CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 407

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC------KIIRELDLEDYS 174
           + G+     T+ +L+      G    A  I   M EG   +       +II+ L L    
Sbjct: 408 KEGLVPNTVTYNALINELCVGGRFSTALKIFHWM-EGHGSLANTQTYNEIIKGLCL---- 462

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               GD +    +FEK+L          PL      P    Y TL+ GY+ +G V++  R
Sbjct: 463 ---GGDIEKAMVLFEKMLKMG-------PL------PTVVTYNTLINGYLTKGNVNNAAR 506

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M+   +N   PD  TY  +VS   K G ++ A     EM   G+  N ++Y  L+ 
Sbjct: 507 LLDLMK---ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLID 563

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ +  ++D A  LL  M ++    P+V SYN +I+G    +  + A    ++M  +G+ 
Sbjct: 564 GHSKDGKVDIALSLLERM-EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLL 622

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  I+YTTL+     + + + A K+F +M    +   ++  ++ L+ G C+ G  +EA+ 
Sbjct: 623 PNVITYTTLIDGLCRNGRTQFAFKIFHDM-EKRKCLPNLYTYSSLIYGLCQEGKADEAEI 681

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALL-------------------LWKEIK 455
           +++ M+  G  P+  T+ SL +G  +  +   A L                   L K ++
Sbjct: 682 LLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQ 741

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEE---------LLDALADI-C--------------VR 491
           + C + +E V    +      P E+         LL  +++I C               R
Sbjct: 742 KECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCR 801

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
              F +A ++V  M+E G  P++  Y  + +  H +     HA
Sbjct: 802 KGRFYEAEQLVKDMKERGFCPDREIYYSLLIA-HCKNLEVDHA 843



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 134/585 (22%), Positives = 242/585 (41%), Gaps = 91/585 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V+ ++ ++S L+  G           +V +    K     +V    P+T  
Sbjct: 371 MKKRGCRPNVQTYTALISGLSRLGK---------LEVAIGLYHKMLKEGLV----PNTVT 417

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YNA++N     G+    L++F  M   G+  +  TYN +IK LC     +  +V + E++
Sbjct: 418 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMV-LFEKM 476

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+MG    + T+ +L+  Y+  G++  A  ++  M+E   +  +      +  +S    G
Sbjct: 477 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW--G 534

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFA-------------------------PNSR 214
             +     F++++   +NP+   P+   T                           PN  
Sbjct: 535 KLESASFYFQEMVECGLNPN---PVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVE 591

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y  ++ G   E R S+  ++   M  Q      P+ +TYTT++  L + G    A ++ 
Sbjct: 592 SYNAVINGLSKENRFSEAEKICDKMAEQ---GLLPNVITYTTLIDGLCRNGRTQFAFKIF 648

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M +     N  TY+ L+ G CQ+ + D+A+ LL+EM +   + PD V++  LIDGF++
Sbjct: 649 HDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM-ERKGLAPDEVTFTSLIDGFVV 707

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAF---ALSSQPKLANK---VFDEMLRDPR 388
           +     A      M   G  P   +Y+ L+K      L  + K+A +   V+     +  
Sbjct: 708 LGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKD 767

Query: 389 VKVDIVA-----------------WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           V  +IV+                 ++ LV G CR G   EA+++++ MKE GF P+   Y
Sbjct: 768 VNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIY 827

Query: 432 GSLANGISLARKPGEALLLWKEIKER-------------CEVKKEG------VNADSDLP 472
            SL        +   AL ++  I+ +             C + K G         D+ L 
Sbjct: 828 YSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE 887

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                DE +   L D  ++       ++++  ME     PN   Y
Sbjct: 888 KEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 932



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/505 (22%), Positives = 208/505 (41%), Gaps = 80/505 (15%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V+  R      + S  +P    +N ++N  +  GK ++   +  Q+ ++   PDV TY 
Sbjct: 220 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 279

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I    R     L   V +R+++ G      T+ +L+                      
Sbjct: 280 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLING-------------------- 319

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT--------- 208
              +C              NEG  D+  ++ E+++   I P+     LP T         
Sbjct: 320 ---LC--------------NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 362

Query: 209 -------------FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                          PN + YT L+ G    G++   + +   M ++      P+ VTY 
Sbjct: 363 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKE---GLVPNTVTYN 419

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            +++ L   G    A ++   M   G  AN  TYN ++KG C    I+KA  L  +M   
Sbjct: 420 ALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM 479

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + P VV+YN LI+G++   +   A    + M+  G  P + +Y  L+  F+   + + 
Sbjct: 480 GPL-PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLES 538

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A+  F EM+ +  +  + V++  L++G+ + G V+ A  ++ERM+E G  PNV +Y ++ 
Sbjct: 539 ASFYFQEMV-ECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVI 597

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           NG+S   +  EA  +  ++            A+  L P +     L+D L     R    
Sbjct: 598 NGLSKENRFSEAEKICDKM------------AEQGLLPNVITYTTLIDGLC----RNGRT 641

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
           + A +I   ME+    PN   Y  +
Sbjct: 642 QFAFKIFHDMEKRKCLPNLYTYSSL 666



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 122/550 (22%), Positives = 216/550 (39%), Gaps = 110/550 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           ML+ G +P+   ++ +++ L   G               G + + + ++ ++K +    D
Sbjct: 406 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 465

Query: 48  PD--IVSDSK-------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            +  +V   K       P    YN ++N     G      +L D M E G +PD  TYN 
Sbjct: 466 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 525

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-- 156
           ++   ++  +     F  + ++E G+     ++ +L+  +   G ++IA ++++ M E  
Sbjct: 526 LVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMG 585

Query: 157 ---GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT----F 209
                     +I  L  E+  SE E   D   E  + LLPN I  ++    L +     F
Sbjct: 586 CNPNVESYNAVINGLSKENRFSEAEKICDKMAE--QGLLPNVITYTTLIDGLCRNGRTQF 643

Query: 210 A-------------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
           A             PN   Y++L+ G   EG+  +   +L  M R+      PD VT+T+
Sbjct: 644 AFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERK---GLAPDEVTFTS 700

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY---CQQLQ------------ 301
           ++   V  G +D A  +L  M  +G   N  TY++LLKG    C  L+            
Sbjct: 701 LIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYS 760

Query: 302 ---------IDKAKELLREMADDAKIEPDVVSYNILIDGFI----------LIDDSA--- 339
                     +    LL  M++    EP + +Y+ L+ G            L+ D     
Sbjct: 761 FSPHEKDVNFEIVSNLLARMSEIG-CEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERG 819

Query: 340 ----------------------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
                                  AL  F+ + A+G       Y  L+ A   + Q + A 
Sbjct: 820 FCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQ 879

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +FD ML +     D + W +LV+G  + G ++   +++  M+   F PN+ TY  L   
Sbjct: 880 ALFDNML-EKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRE 938

Query: 438 ISLARKPGEA 447
           +S   K  E+
Sbjct: 939 LSRIGKSIES 948



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 3/179 (1%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R+  PA+ I   +++K    + +I +  + L E++        + S N L+      +  
Sbjct: 164 RVFAPADHIRI-LMIKACRNEEEIRRVADFLNEISG-MGFGFSLYSCNTLLIQLAKFEMV 221

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
            GA   + +M   GI P+ +++ TL+   +   + + A  +  ++ +   +  D+  +  
Sbjct: 222 EGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYD-LSPDVFTYTS 280

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           L+ G+CR   ++ A  + +RM + G  PN  TY +L NG+    +  EAL + +E+ E+
Sbjct: 281 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 339


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 122/500 (24%), Positives = 215/500 (43%), Gaps = 84/500 (16%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D    N VLNA  + G   + L L   +  FG +PDV++YN ++K    A R   +  ++
Sbjct: 191 DVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELM 250

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           E ++ M     + TF +L++     G  E + E + Q +  G                  
Sbjct: 251 EEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG------------------ 292

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              P+ R+Y T++ G   EG +     +
Sbjct: 293 ---------------------------------CTPDIRMYATIIDGICKEGHLEVAHEI 319

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    R       P+ V Y T++  L  A   +   ++LAEM     P + +T+NIL+  
Sbjct: 320 L---NRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDF 376

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +CQ   +D+  ELL +M +   + PDV++Y  +I+GF    LID+   A+     M A G
Sbjct: 377 FCQNGLVDRVIELLEQMLERGCM-PDVITYTTVINGFCKEGLIDE---AVMLLKSMTACG 432

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  ISYT ++K    + +   A  +  +M++     ++ + +N L+   C+ GLVE+A
Sbjct: 433 CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQ-GCPLNPITFNTLINFLCKKGLVEQA 491

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CE 459
             ++++M  NG  P++ +Y ++ +G+  A K  EAL L   +  +               
Sbjct: 492 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 551

Query: 460 VKKEG-VNA-----DSDLPPPLKPDEELLDA-LADICVRAAFFRKALEIVACMEEHGIPP 512
           + +EG +N      D+     ++ D  L +A ++ +C R    R A+E +A M   G  P
Sbjct: 552 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETER-AIEFLAYMVSSGCVP 610

Query: 513 NKTKYKKIYVEMHSRMFTSK 532
           N++ Y  +   + S  F  +
Sbjct: 611 NESTYTILIRGLASEGFVKE 630



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 187/406 (46%), Gaps = 25/406 (6%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +PD  +YNAVL       +     +L ++M      P+++T+N +I    R      + 
Sbjct: 223 CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVH 282

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDV 161
            VL +++E G T  +  + +++      G LE+A  I+  M                + +
Sbjct: 283 EVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGL 342

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C   R  + E+  +E    D   D+V   +L +    +            +L +   P+ 
Sbjct: 343 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDV 402

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT++ G+  EG + + V +L +M         P+ ++YT V+  L  A     A  +
Sbjct: 403 ITYTTVINGFCKEGLIDEAVMLLKSMTA---CGCKPNTISYTIVLKGLCSAERWVDAEDL 459

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           +++M + G P N IT+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG  
Sbjct: 460 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLG 518

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  AL   N M  +G++P  I Y+++  A +   +     ++FD  ++D  ++ D 
Sbjct: 519 KAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN-IQDTTIRSDA 577

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           V +N ++   C+ G  E A   +  M  +G  PN +TY  L  G++
Sbjct: 578 VLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 623



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 24/291 (8%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V RV +  +  +     PD   Y  V+N     G   + + L   M   G KP+ ++Y 
Sbjct: 382 LVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYT 441

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMRE 156
           +++K    A R      ++ ++++ G  L   TF +L+      G +E A E + Q +  
Sbjct: 442 IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN 501

Query: 157 GRRDVCKIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
           G           DL  YS+  +  G     DE  E LL   +N         K  +PN+ 
Sbjct: 502 GCSP--------DLISYSTVIDGLGKAGKTDEALE-LLNVMVN---------KGMSPNTI 543

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           IY+++      EGR++  ++M   +   +D     D V Y  V+S+L K G  +RA + L
Sbjct: 544 IYSSIASALSREGRINKVIQMFDNI---QDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           A M   G   N  TY IL++G   +  + +A+E+L E+     +   ++ +
Sbjct: 601 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALRKHLMKH 651



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 21/232 (9%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN ++ GYC+  Q++ A    R +A    + P+  +Y  ++         A AL   +EM
Sbjct: 93  YNAMVAGYCRAGQLESA----RRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RG AP    Y  +++A       + A +V ++ L      +D+   N+++   C  G 
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLED-LHARGCALDVGNCNLVLNAICDQGS 207

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           V+EA  ++  +   G  P+V +Y ++  G+ +A++       W  ++   E+ +E V   
Sbjct: 208 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKR-------WGCVQ---ELMEEMVRMA 257

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              PP +     L+  L     R   F +  E++A M EHG  P+   Y  I
Sbjct: 258 C--PPNIVTFNTLISYLC----RNGLFERVHEVLAQMVEHGCTPDIRMYATI 303


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 204/429 (47%), Gaps = 26/429 (6%)

Query: 27  GPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
           G +     + +VV   R+     I S+        + ++N  + LG       +F  + +
Sbjct: 77  GSLVKANHYSIVVSLHRQMEFNGIASN----LVTLSILINCFSQLGHNSLSFSVFSNILK 132

Query: 87  FGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
            G +PD +T   +IK LC +      L F  +++L +G  L   ++++L+      G  +
Sbjct: 133 KGYEPDAITLTTLIKGLCLKGDIHKALHF-HDKVLALGFQLNQVSYRTLINGLCKVGQTK 191

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
                  A+   RR   K++R LD+  Y++  +G   D      KL+ ++ +  SE  ++
Sbjct: 192 ------AALEMLRRIDGKLVR-LDVVMYNTIIDGVCKD------KLVNDAFDFYSE--MV 236

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            K   P    Y TL+ G    G++ D + +L  M  +  N   P   T++ +V A  K G
Sbjct: 237 AKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENIN---PTVYTFSILVDAFCKEG 293

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +  A+ V   M +  V  N +TYN L+ GYC   +++KA+ +   MA    + PDV SY
Sbjct: 294 KVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIG-VAPDVHSY 352

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           +I+I GF  I     A+  F EM  + I P  ++Y +L+     S +   A K+  EM  
Sbjct: 353 SIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEM-H 411

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D     +I+ +N L++  C+   V++A  ++ ++K++   P+V TY  L NG+  + +  
Sbjct: 412 DRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLK 471

Query: 446 EALLLWKEI 454
           +A  +++++
Sbjct: 472 DAQKVFEDV 480



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 21/314 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L   F  N   Y TL+ G    G+    + ML   RR +      D V Y T++  + K
Sbjct: 165 VLALGFQLNQVSYRTLINGLCKVGQTKAALEML---RRIDGKLVRLDVVMYNTIIDGVCK 221

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A    +EM    +    +TYN L+ G C   Q+  A  LL +M  +  I P V 
Sbjct: 222 DKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILE-NINPTVY 280

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +++IL+D F        A   F  M  + + P  ++Y +LM  + L ++   A  +F+ M
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM 340

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            +   V  D+ ++++++ G+C++ +V+EA ++ E M     +P+V TY SL +G+  + +
Sbjct: 341 AQ-IGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGR 399

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
              AL L  E+ +R +            PP +     LLDAL     +     KA+E++ 
Sbjct: 400 ISYALKLIGEMHDRGQ------------PPNIITYNSLLDALC----KNHHVDKAIELLT 443

Query: 504 CMEEHGIPPNKTKY 517
            +++H I P+   Y
Sbjct: 444 KLKDHNIQPSVCTY 457



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 158/339 (46%), Gaps = 33/339 (9%)

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS------DTVRMLGAMRR 241
           F +L  NS++ S    +L K + P++   TTL+KG   +G +       D V  LG    
Sbjct: 114 FSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLN 173

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q         V+Y T+++ L K G    A ++L  +    V  + + YN ++ G C+   
Sbjct: 174 Q---------VSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKL 224

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ++ A +   EM    +I P VV+YN LI G  ++     A+   ++M    I PT  +++
Sbjct: 225 VNDAFDFYSEMVAK-RICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFS 283

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+ AF    + K A  VF  M++   VK +IV +N L+ GYC +  V +A+ I   M +
Sbjct: 284 ILVDAFCKEGKVKEAKNVFVVMMKKD-VKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQ 342

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  P+V +Y  + +G    +   EA+ L++E+   C+               + PD   
Sbjct: 343 IGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEM--HCK--------------QIFPDVVT 386

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            ++L D   ++     AL+++  M + G PPN   Y  +
Sbjct: 387 YNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSL 425



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 181/447 (40%), Gaps = 109/447 (24%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P     +T++  L   GD             + +   F D  +    + +  +
Sbjct: 130 ILKKGYEPDAITLTTLIKGLCLKGD-------------IHKALHFHDKVLALGFQLNQVS 176

Query: 61  YNAVLNACANLGKPKKFLQL--------------------------------FDQMHEFG 88
           Y  ++N    +G+ K  L++                                FD   E  
Sbjct: 177 YRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMV 236

Query: 89  AK---PDVLTYNVMI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
           AK   P V+TYN +I  LC     K  +  + + ILE  I   + TF  LV A+   G +
Sbjct: 237 AKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILE-NINPTVYTFSILVDAFCKEGKV 295

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--P 202
           + A+ +   M   ++DV     + ++  Y+S   G            L N +N +     
Sbjct: 296 KEAKNVFVVMM--KKDV-----KPNIVTYNSLMNG----------YCLVNEVNKAESIFN 338

Query: 203 PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
            +     AP+   Y+ ++ G+     V + +++   M  ++     PD VTY +++  L 
Sbjct: 339 TMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQ---IFPDVVTYNSLIDGLC 395

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           K+G +  A +++ EM   G P N ITYN LL   C+   +DKA ELL ++ D   I+P V
Sbjct: 396 KSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDH-NIQPSV 454

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
            +YNILI+G                                      S + K A KVF++
Sbjct: 455 CTYNILING-----------------------------------LCKSGRLKDAQKVFED 479

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           +L +    +D+  +N +++G+C+ G V
Sbjct: 480 VLVNGY-NIDVYTYNTMIKGFCKKGFV 505


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 196/437 (44%), Gaps = 37/437 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G LP V+ +  +++    +G+         F+ V + + + +   +  + K     +N V
Sbjct: 270 GVLPTVETYGALINGFCKAGE---------FEAVDQLLTEMAARGLNMNVK----VFNNV 316

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++A    G   +  ++  +M E G  PD+ TYN+MI    +  R      +LE+  E G+
Sbjct: 317 IDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGL 376

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                ++  L+ AY   GD   A  ++  + E       I  + DL  Y +   G     
Sbjct: 377 LPNKFSYTPLMHAYCKKGDYVKASGMLFRIAE-------IGEKSDLVSYGAFIHG----- 424

Query: 185 DEVFEKLLPNSINPS--SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                 ++   I+ +      ++ K   P+++IY  LM G   +GR+     +L  M   
Sbjct: 425 -----VVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEML-- 477

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D    PD   + T++   ++ G +D A ++   + R GV    + YN ++KG+C+  ++
Sbjct: 478 -DRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKM 536

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A   L EM +     PD  +Y+ +IDG++   D + AL  F +M      P  I+YT+
Sbjct: 537 TDALSCLNEM-NSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTS 595

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  F   +    A KVF  M +   +  ++V +  LV G+ + G  E A  I E M  N
Sbjct: 596 LINGFCKKADMIRAEKVFSGM-KSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLMN 654

Query: 423 GFYPNVATYGSLANGIS 439
           G  PN AT+  L NG++
Sbjct: 655 GCLPNDATFHYLINGLT 671



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 178/426 (41%), Gaps = 53/426 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++     G  +   +  +++   G  P V TY  +I    +A     +  +
Sbjct: 238 PHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQL 297

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +   G+ + +  F +++ A   +G +  A  +++ M E        I   ++    S
Sbjct: 298 LTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAE--MGCGPDITTYNIMINFS 355

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  ++ DE+ EK        + E  LLP  F+     YT LM  Y  +G   D V+ 
Sbjct: 356 CKGGRIEEADELLEK--------AKERGLLPNKFS-----YTPLMHAYCKKG---DYVKA 399

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G + R  +     D V+Y   +  +V AG +D A  V  +M   GV  +   YNIL+ G
Sbjct: 400 SGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSG 459

Query: 296 YCQQLQIDKAKELLREMADD----------------------------------AKIEPD 321
            C++ +I   K LL EM D                                     ++P 
Sbjct: 460 LCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPG 519

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           +V YN +I GF        AL+  NEM +   AP + +Y+T++  +        A K+F 
Sbjct: 520 IVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFG 579

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           +M++  + K +++ +  L+ G+C+   +  A+++   MK     PNV TY +L  G   A
Sbjct: 580 QMMKH-KFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKA 638

Query: 442 RKPGEA 447
            KP  A
Sbjct: 639 GKPERA 644



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 188/470 (40%), Gaps = 42/470 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF----GAKPDVLTYNVMIK-LCARASRKH 110
           P   A N +LN     GK    LQL+D+M +     GA  D  T ++M+K LC     + 
Sbjct: 164 PTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEE 223

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
               +  R  +  +   +  +  ++  Y   GDL+ A   +  ++   + V   +     
Sbjct: 224 GRRLIKHRWGKCCVPH-VVFYNMIIDGYCKKGDLQCATRALNELK--MKGVLPTVETYGA 280

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   G+ +  D++  ++    +N              N +++  ++      G V+
Sbjct: 281 LINGFCKAGEFEAVDQLLTEMAARGLNM-------------NVKVFNNVIDAEYKYGLVT 327

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +   ML   RR  +    PD  TY  +++   K G ++ A ++L +    G+  N+ +Y 
Sbjct: 328 EAAEML---RRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYT 384

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+  YC++    KA  +L  +A+  + + D+VSY   I G ++  +   AL    +M  
Sbjct: 385 PLMHAYCKKGDYVKASGMLFRIAEIGE-KSDLVSYGAFIHGVVVAGEIDVALMVREKMME 443

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+ P    Y  LM       +      +  EML D  V+ D+  +  L++G+ R G ++
Sbjct: 444 KGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEML-DRNVQPDVYVFATLIDGFIRNGELD 502

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           EA +I + +   G  P +  Y ++  G     K  +AL    E+                
Sbjct: 503 EAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHA---------- 552

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 PDE     + D  V+      AL++   M +H   PN   Y  +
Sbjct: 553 ------PDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSL 596



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 123/251 (49%), Gaps = 8/251 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    ++ L+  Y   G +   +++   +R   +    P  V    +++ LVK+G +D A
Sbjct: 128 PTREAFSALILAYAESGSLDRALQLFHTVREMHN--CFPTFVASNLLLNGLVKSGKVDVA 185

Query: 271 RQVLAEMTRI----GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            Q+  +M +     G   +  T +I++KG C   +I++ + L++       + P VV YN
Sbjct: 186 LQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCV-PHVVFYN 244

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ++IDG+    D   A    NE++ +G+ PT  +Y  L+  F  + + +  +++  EM   
Sbjct: 245 MIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAAR 304

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             + +++  +N +++   + GLV EA  ++ RM E G  P++ TY  + N      +  E
Sbjct: 305 G-LNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEE 363

Query: 447 ALLLWKEIKER 457
           A  L ++ KER
Sbjct: 364 ADELLEKAKER 374



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 184/470 (39%), Gaps = 54/470 (11%)

Query: 78  LQLFD--QMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           L+ FD      F    D + ++ ++KL A       +  VLE +    +      F +L+
Sbjct: 78  LKFFDWASTRPFSCSLDGVAHSSLLKLLASYRVFPEIELVLENMKAQHLKPTREAFSALI 137

Query: 136 AAYVGFGDLEIAETIVQAMRE---------------------GRRDVCKIIRELDLEDYS 174
            AY   G L+ A  +   +RE                     G+ DV   + +  L+   
Sbjct: 138 LAYAESGSLDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDD 197

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLP----KTFAPNSRIYTTLMKGYMNEGRVS 230
                 D+    +  K L N         L+     K   P+   Y  ++ GY  +G + 
Sbjct: 198 GTGAVVDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQ 257

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              R L  ++ +      P   TY  +++   KAG  +   Q+L EM   G+  N   +N
Sbjct: 258 CATRALNELKMK---GVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFN 314

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++    +   + +A E+LR MA +    PD+ +YNI+I+          A     + + 
Sbjct: 315 NVIDAEYKYGLVTEAAEMLRRMA-EMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKE 373

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGL 408
           RG+ P K SYT LM A+        A+ +   + R   +  K D+V++   + G    G 
Sbjct: 374 RGLLPNKFSYTPLMHAYCKKGDYVKASGM---LFRIAEIGEKSDLVSYGAFIHGVVVAGE 430

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGIS-LARKPGEALLLWKEIKERCEVKKEGVNA 467
           ++ A  + E+M E G +P+   Y  L +G+    R P   LLL  E+ +R          
Sbjct: 431 IDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLL-SEMLDR---------- 479

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                  ++PD  +   L D  +R     +A++I   +   G+ P    Y
Sbjct: 480 ------NVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGY 523


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 204/450 (45%), Gaps = 52/450 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+      +  + L LF QM     KP+V+T+  ++    R  R    V +
Sbjct: 48  PTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVAL 103

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E        I+  D+  YS+
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSH-----IKP-DVVIYSA 157

Query: 176 -----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                  +G   D   +F ++    I              P+   Y+ ++ G+ + G+ S
Sbjct: 158 IIDGLWKDGRHTDAQNLFIEMQDKGI-------------FPDIVTYSCMINGFCSSGKWS 204

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  R+L  M  ++ +   PD VT++ +++ALVK G ++ A+ +L EM   GV  N +T N
Sbjct: 205 EAQRLLQEMLVRKIS---PDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCN 261

Query: 291 ILLKGYCQQLQIDKAKELLREMAD-----DAK-----IEPDVVSYNILIDGFILIDDSAG 340
            LL G C   ++  A E+ + M       DA      +EPDV +YNILI G I       
Sbjct: 262 TLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLE 321

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A   + EM  RGI P  ++Y++++      S+   A ++FD M        +IV +N L+
Sbjct: 322 AEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSM-GSKSFSPNIVTFNTLI 380

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            GYC+ G+V++   +   M   G   N  TY +L  G         +L +++E+      
Sbjct: 381 TGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM------ 434

Query: 461 KKEGVNADS----DLPPPLKPDEELLDALA 486
              GV  D+    ++   L   EEL  ALA
Sbjct: 435 ISSGVYPDTITIRNMLTGLWSKEELKKALA 464



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 155/312 (49%), Gaps = 13/312 (4%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P    + TL+ G   E RVS+ + +   M +       P+ VT+TT+++ L + G + 
Sbjct: 46  FHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCK-------PNVVTFTTLMNGLCREGRVV 98

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +L  M   G+  N+ITY  ++ G C+      A  LLR+M + + I+PDVV Y+ +
Sbjct: 99  EAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAI 158

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG         A   F EM+ +GI P  ++Y+ ++  F  S +   A ++  EML   +
Sbjct: 159 IDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV-RK 217

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +  D+V ++ L+    + G +  A+ +++ M  +G  PNV T  +L +G+  + K  +AL
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDAL 277

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            ++K + ++  +  +  +A + + P ++    L+  L    +    F +A E+   M   
Sbjct: 278 EMFKAM-QKSMMDIDATHAFNGVEPDVQTYNILISGL----INEGKFLEAEELYEEMPHR 332

Query: 509 GIPPNKTKYKKI 520
           GI P+   Y  +
Sbjct: 333 GIVPDTVTYSSM 344



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 183/432 (42%), Gaps = 81/432 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+   + T+V  +   GD   V ++ L       +RK  +   +S  KPD   
Sbjct: 107 MVEDGLQPNQITYGTIVDGMCKMGD--TVSALNL-------LRKMEE---LSHIKPDVVI 154

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A+++     G+      LF +M + G  PD++TY+ MI     + +      +L+ +L
Sbjct: 155 YSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEML 214

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              I+  + TF  L+ A V  GDL  A+ ++Q M                          
Sbjct: 215 VRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM-------------------------- 248

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   +     PN     TL+ G  + G++ D + M  AM+
Sbjct: 249 ------------------------ISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284

Query: 241 RQ--EDNASH------PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +   + +A+H      PD  TY  ++S L+  G    A ++  EM   G+  + +TY+ +
Sbjct: 285 KSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSM 344

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMR 349
           + G C+Q ++D+A ++   M   +   P++V++N LI G+    ++DD    L  F EM 
Sbjct: 345 INGLCKQSRLDEATQMFDSMGSKS-FSPNIVTFNTLITGYCKAGMVDD---GLELFCEMG 400

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RGI    I+Y TL++ F        +  +F EM+        I   NML   + +    
Sbjct: 401 RRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSK---- 456

Query: 410 EEAKRIIERMKE 421
           EE K+ +  ++E
Sbjct: 457 EELKKALAMLEE 468



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 114/264 (43%), Gaps = 21/264 (7%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  ++  ++        +  A     ++T++G     +T+N LL G C + ++ +A +L 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M      +P+VV++  L++G         A+   + M   G+ P +I+Y T++     
Sbjct: 74  HQMC-----KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCK 128

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                 A  +  +M     +K D+V ++ +++G  + G   +A+ +   M++ G +P++ 
Sbjct: 129 MGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIV 188

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY  + NG   + K  EA  L +E+  R                 + PD      L +  
Sbjct: 189 TYSCMINGFCSSGKWSEAQRLLQEMLVR----------------KISPDVVTFSGLINAL 232

Query: 490 VRAAFFRKALEIVACMEEHGIPPN 513
           V+      A +++  M   G+ PN
Sbjct: 233 VKEGDLNSAQDLLQEMISSGVCPN 256



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 20/201 (9%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           +I  D+ S+NILI  F        AL+ F ++   G  PT +++ TL+    +  +   A
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +F +M      K ++V +  L+ G CR G V EA  +++RM E+G  PN  TYG++ +
Sbjct: 70  LDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+        AL L ++++E   +               KPD  +  A+ D   +     
Sbjct: 125 GMCKMGDTVSALNLLRKMEELSHI---------------KPDVVIYSAIIDGLWKDGRHT 169

Query: 497 KALEIVACMEEHGIPPNKTKY 517
            A  +   M++ GI P+   Y
Sbjct: 170 DAQNLFIEMQDKGIFPDIVTY 190



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 20/133 (15%)

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           ++  DI ++N+L++ +C    +  A     ++ + GF+P + T+ +L +G+ +  +  EA
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           L L+ ++                     KP+      L +   R     +A+ ++  M E
Sbjct: 70  LDLFHQM--------------------CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVE 109

Query: 508 HGIPPNKTKYKKI 520
            G+ PN+  Y  I
Sbjct: 110 DGLQPNQITYGTI 122


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 207/465 (44%), Gaps = 36/465 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++NA    G  ++  +L D M   G KP V TYN +I    +  +      V
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +L++G++    T+  L+       ++  AE I   M   +  V  ++    L    S
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM-PSQGVVPDLVSFSALIGLLS 405

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +N G  D   + F  +    +             AP++ IYT L+ G+   G +S+ +++
Sbjct: 406 KN-GCLDQALKYFRDMKNAGL-------------APDNVIYTILIGGFCRNGVMSEALKV 451

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  Q       D VTY T+++ L K   +  A ++  EMT  GV  +  T+  L+ G
Sbjct: 452 RDEMLEQ---GCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 508

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +   ++KA  L  EM     ++PDVV+YN LIDGF    +       +N+M +R I P
Sbjct: 509 YSKDGNMNKAVTLF-EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYP 567

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ISY  L+  +        A +++DEM+ +   +  I+  N +V+GYCR G   +A   
Sbjct: 568 NHISYGILINGYCNMGCVSEAFRLWDEMV-EKGFEATIITCNTIVKGYCRAGNAVKADEF 626

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M   G  P+  TY +L NG         A  L  +++            +S L P +
Sbjct: 627 LSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKME------------NSGLLPDV 674

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                +L+  +    R    ++A  I+  M E G+ P+++ Y  +
Sbjct: 675 ITYNVILNGFS----RQGRMQEAELIMLKMIERGVNPDRSTYTSL 715



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 24/268 (8%)

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           +++  LVK G +D A ++  E+ R GV  N  T NI++   C+  +I+  K  L +M ++
Sbjct: 224 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM-EE 282

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + PDVV+YN LI+ +        A    + M  +G+ P   +Y  ++     + +   
Sbjct: 283 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR 342

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A  V DEML+   +  D   +N+L+   CR   + +A+RI + M   G  P++ ++ +L 
Sbjct: 343 AKGVLDEMLK-IGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL- 400

Query: 436 NGISLARKPG---EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
             I L  K G   +AL  ++++K                   L PD  +   L     R 
Sbjct: 401 --IGLLSKNGCLDQALKYFRDMKN----------------AGLAPDNVIYTILIGGFCRN 442

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
               +AL++   M E G   +   Y  I
Sbjct: 443 GVMSEALKVRDEMLEQGCVLDVVTYNTI 470



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 45/379 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P + ++S ++  L+ +G           D  +K  R   +  +     PD   
Sbjct: 385 MPSQGVVPDLVSFSALIGLLSKNG---------CLDQALKYFRDMKNAGLA----PDNVI 431

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++      G   + L++ D+M E G   DV+TYN ++  LC    ++ +L    E  
Sbjct: 432 YTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLC----KEKMLSEADELF 487

Query: 120 LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYS 174
            EM   G+     TF +L+  Y   G++  A T+ + M  R  + DV      +D     
Sbjct: 488 TEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 547

Query: 175 SENEGDDDD-DDEVFEKLLPNSINPS------------SEP-----PLLPKTFAPNSRIY 216
           SE E  ++  +D +  ++ PN I+              SE       ++ K F       
Sbjct: 548 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 607

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            T++KGY   G        L  M  +      PD +TY T+++  +K  +MDRA  ++ +
Sbjct: 608 NTIVKGYCRAGNAVKADEFLSNMLLK---GIVPDGITYNTLINGFIKEENMDRAFALVNK 664

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  + ITYN++L G+ +Q ++ +A+ ++ +M +   + PD  +Y  LI+G +  +
Sbjct: 665 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG-VNPDRSTYTSLINGHVTQN 723

Query: 337 DSAGALTFFNEMRARGIAP 355
           +   A    +EM  RG  P
Sbjct: 724 NLKEAFRVHDEMLQRGFVP 742



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 21/266 (7%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           V+  +V+   + R   V + +   G   +N + +++L++ Y Q  ++ +  E  R +   
Sbjct: 154 VILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSK 213

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             +   + + N L+ G + +     A   + E+   G+      YT  +   AL    K+
Sbjct: 214 G-LCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVN--VYTLNIMINALCKNQKI 270

Query: 376 AN-KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            N K F   + +  V  D+V +N L+  YCR GL+EEA  +++ M   G  P V TY ++
Sbjct: 271 ENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAI 330

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            NG+    K G+ L            + +GV  D  L   + PD    + L   C R   
Sbjct: 331 INGLC---KTGKYL------------RAKGV-LDEMLKIGMSPDTATYNILLVECCRNDN 374

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
              A  I   M   G+ P+   +  +
Sbjct: 375 MMDAERIFDEMPSQGVVPDLVSFSAL 400


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 193/430 (44%), Gaps = 25/430 (5%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            + D  +YNAVL       +     +L D+M      P+++T+N +I    R      + 
Sbjct: 212 CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDV 161
            VL ++ E G T  +  + +++      G LE+A  I+  M                + +
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C   R  + E+  SE    D   D+V   +L +    +            +L     P+ 
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT++ G+  EG + + V +L +M         P+ V+YT V+  L  AG    A ++
Sbjct: 392 ITYTTVINGFCKEGLIDEAVMLLKSM---SSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           +++M + G P N +T+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG  
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLG 507

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  AL   N M  +GI+P  I Y+++  A +   +     ++FD  ++D  ++ D 
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN-IKDTTIRSDA 566

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N ++   C+    + A      M  NG  PN +TY  L  G++      EA  L  E
Sbjct: 567 VLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSE 626

Query: 454 IKERCEVKKE 463
           +  R  ++K 
Sbjct: 627 LCSRGALRKH 636



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 209/487 (42%), Gaps = 82/487 (16%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           DT   N VLNA    G   + + L  ++  FG + D+++YN ++K    A R   +  ++
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELM 239

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++ +     + TF +L+      G  E    ++  M E                    
Sbjct: 240 DEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE-------------------- 279

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                             P+ R+Y T++ G   EG +     +L
Sbjct: 280 ------------------------------HGCTPDIRMYATIIDGICKEGHLEVANEIL 309

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
               R       P+ V Y TV+  L  A     A ++L+EM +   P + +T+NIL+  +
Sbjct: 310 ---NRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGI 353
           CQ   +D+  ELL +M     + PDV++Y  +I+GF    LID+   A+     M + G 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCM-PDVITYTTVINGFCKEGLIDE---AVMLLKSMSSCGC 422

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  +SYT ++K    + +   A ++  +M++      + V +N L+   C+ GLVE+A 
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEV 460
            ++++M  NG  P++ +Y ++ +G+  A K  EAL L   +  +             C +
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACAL 541

Query: 461 KKEG-VNA-----DSDLPPPLKPDEELLDA-LADICVRAAFFRKALEIVACMEEHGIPPN 513
            +EG VN      D+     ++ D  L +A ++ +C R    R A++  A M  +G  PN
Sbjct: 542 SREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDR-AIDFFAYMVSNGCMPN 600

Query: 514 KTKYKKI 520
           ++ Y  +
Sbjct: 601 ESTYTML 607



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 135/310 (43%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  +  +++G    GR++D + +L  M  +      P    Y  ++ A  ++G    +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFK---GCAPIPPMYHVILEAACRSGGFRNS 165

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL  M   G   +    N++L   C+Q  +D+A  LLR++A     E D+VSYN ++ 
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLK 224

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G  +           +EM     AP  +++ TL+     +   +  ++V  +M  +    
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQM-SEHGCT 283

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DI  +  +++G C+ G +E A  I+ RM   G  PNV  Y ++  G+  A +       
Sbjct: 284 PDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER------- 336

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           WKE +   E+  E    D  L      D+   + L D   +     + +E++  M  HG 
Sbjct: 337 WKEAE---ELLSEMFQKDCPL------DDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 511 PPNKTKYKKI 520
            P+   Y  +
Sbjct: 388 MPDVITYTTV 397



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 167/388 (43%), Gaps = 28/388 (7%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS---------K 55
           GYL     +  V   LA   + G    ++++  ++  + K    ++ ++          K
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN VL    +  + K+  +L  +M +     D +T+N+++    +      ++ +
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE++L  G    + T+ +++  +   G ++ A  ++++M         +   + L+   S
Sbjct: 379 LEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D +E+  +++     P+      P TF        TL+     +G V   + +
Sbjct: 439 --AGRWVDAEELMSQMIQQGCPPN------PVTF-------NTLINFLCKKGLVEQAIEL 483

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M     N   PD ++Y+TV+  L KAG  + A ++L  M   G+  N I Y+ +   
Sbjct: 484 LKQMLV---NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACA 540

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             ++ +++K  ++   +  D  I  D V YN +I       ++  A+ FF  M + G  P
Sbjct: 541 LSREGRVNKVIQMFDNI-KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEM 383
            + +YT L+K  A     K A ++  E+
Sbjct: 600 NESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 21/234 (8%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           + YN ++ GYC+  Q+  A+     +A    + P+  ++  ++ G       A AL   +
Sbjct: 80  VAYNAMVAGYCRAGQLAAAR----RLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  +G AP    Y  +++A   S   + + +V + M       +D    N+++   C  
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM-HAKGCTLDTGNCNLVLNAICEQ 194

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G V+EA  ++ ++   G   ++ +Y ++  G+ +A++       W +++   E+  E V 
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKR-------WGDVE---ELMDEMVR 244

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            D        P+    + L     R   F +  E++A M EHG  P+   Y  I
Sbjct: 245 VDC------APNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATI 292


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 193/430 (44%), Gaps = 25/430 (5%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            + D  +YNAVL       +     +L D+M      P+++T+N +I    R      + 
Sbjct: 212 CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDV 161
            VL ++ E G T  +  + +++      G LE+A  I+  M                + +
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C   R  + E+  SE    D   D+V   +L +    +            +L     P+ 
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT++ G+  EG + + V +L +M         P+ V+YT V+  L  AG    A ++
Sbjct: 392 ITYTTVINGFCKEGLIDEAVMLLKSM---SSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           +++M + G P N +T+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG  
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLG 507

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  AL   N M  +GI+P  I Y+++  A +   +     ++FD  ++D  ++ D 
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN-IKDTTIRSDA 566

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N ++   C+    + A      M  NG  PN +TY  L  G++      EA  L  E
Sbjct: 567 VLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSE 626

Query: 454 IKERCEVKKE 463
           +  R  ++K 
Sbjct: 627 LCSRGALRKH 636



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 209/487 (42%), Gaps = 82/487 (16%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           DT   N VLNA    G   + + L  ++  FG + D+++YN ++K    A R   +  ++
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELM 239

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++ +     + TF +L+      G  E    ++  M E                    
Sbjct: 240 DEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE-------------------- 279

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                             P+ R+Y T++ G   EG +     +L
Sbjct: 280 ------------------------------HGCTPDIRMYATIIDGICKEGHLEVANEIL 309

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
               R       P+ V Y TV+  L  A     A ++L+EM +   P + +T+NIL+  +
Sbjct: 310 ---NRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGI 353
           CQ   +D+  ELL +M     + PDV++Y  +I+GF    LID+   A+     M + G 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCM-PDVITYTTVINGFCKEGLIDE---AVMLLKSMSSCGC 422

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  +SYT ++K    + +   A ++  +M++      + V +N L+   C+ GLVE+A 
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEV 460
            ++++M  NG  P++ +Y ++ +G+  A K  EAL L   +  +             C +
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACAL 541

Query: 461 KKEG-VNA-----DSDLPPPLKPDEELLDA-LADICVRAAFFRKALEIVACMEEHGIPPN 513
            +EG VN      D+     ++ D  L +A ++ +C R    R A++  A M  +G  PN
Sbjct: 542 SREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDR-AIDFFAYMVSNGCMPN 600

Query: 514 KTKYKKI 520
           ++ Y  +
Sbjct: 601 ESTYTML 607



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 135/310 (43%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  +  +++G    GR++D + +L  M  +      P    Y  ++ A  ++G    +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFK---GCAPIPPMYHVILEAACRSGGFRNS 165

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL  M   G   +    N++L   C+Q  +D+A  LLR++A     E D+VSYN ++ 
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLK 224

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G  +           +EM     AP  +++ TL+     +   +  ++V  +M  +    
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQM-SEHGCT 283

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DI  +  +++G C+ G +E A  I+ RM   G  PNV  Y ++  G+  A +       
Sbjct: 284 PDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER------- 336

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           WKE +   E+  E    D  L      D+   + L D   +     + +E++  M  HG 
Sbjct: 337 WKEAE---ELLSEMFQKDCPL------DDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 511 PPNKTKYKKI 520
            P+   Y  +
Sbjct: 388 MPDVITYTTV 397



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 167/388 (43%), Gaps = 28/388 (7%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS---------K 55
           GYL     +  V   LA   + G    ++++  ++  + K    ++ ++          K
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN VL    +  + K+  +L  +M +     D +T+N+++    +      ++ +
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE++L  G    + T+ +++  +   G ++ A  ++++M         +   + L+   S
Sbjct: 379 LEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D +E+  +++     P+      P TF        TL+     +G V   + +
Sbjct: 439 --AGRWVDAEELMSQMIQQGCPPN------PVTF-------NTLINFLCKKGLVEQAIEL 483

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M     N   PD ++Y+TV+  L KAG  + A ++L  M   G+  N I Y+ +   
Sbjct: 484 LKQMLV---NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACA 540

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             ++ +++K  ++   +  D  I  D V YN +I       ++  A+ FF  M + G  P
Sbjct: 541 LSREGRVNKVIQMFDNI-KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEM 383
            + +YT L+K  A     K A ++  E+
Sbjct: 600 NESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 21/234 (8%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           + YN ++ GYC+  Q+  A+     +A    + P+  ++  ++ G       A AL   +
Sbjct: 80  VAYNAMVAGYCRAGQLAAAR----RLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  +G AP    Y  +++A   S   + + +V + M       +D    N+++   C  
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM-HAKGCTLDTGNCNLVLNAICEQ 194

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G V+EA  ++ ++   G   ++ +Y ++  G+ +A++       W +++   E+  E V 
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKR-------WGDVE---ELMDEMVR 244

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            D        P+    + L     R   F +  E++A M EHG  P+   Y  I
Sbjct: 245 VDC------APNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATI 292


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 187/386 (48%), Gaps = 35/386 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARAS--RKHL 111
           +P+   +N  +N     GK  K   + + +  +G  P+++TYN +I   C + S  + + 
Sbjct: 197 QPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYR 256

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDL 170
              +L+ +L   I     TF +L+  +    ++  A+   + M R+G +         ++
Sbjct: 257 ADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKP--------NI 308

Query: 171 EDYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
             Y+S      N G  D+   +++K++   +              PN   +  L+ G+  
Sbjct: 309 VTYNSLINGLSNNGKLDEAIALWDKMVGLGL-------------KPNIVTFNALINGFCK 355

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
           +  + +  ++   +  Q+     P+ +T+ T++ A  KAG M+    +   M   G+  N
Sbjct: 356 KKMIKEARKLFDDIAEQD---LVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPN 412

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
             TYN L+ G C+   +  AK+LL EM ++ +++ DVV+YNILI G+    + + A    
Sbjct: 413 VSTYNCLIAGLCRNQNVRAAKKLLNEM-ENYELKADVVTYNILIGGWCKDGEPSKAEKLL 471

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            EM   G+ P  ++Y TLM  + +    K A KV  +M ++ + + ++V +N+L++G+C+
Sbjct: 472 GEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGK-RANVVTYNVLIKGFCK 530

Query: 406 MGLVEEAKRIIERMKENGFYPNVATY 431
            G +E+A R++  M E G  PN  TY
Sbjct: 531 TGKLEDANRLLNEMLEKGLNPNRTTY 556



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 156/356 (43%), Gaps = 53/356 (14%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F+PN   Y TL+ G+  +G      R    ++    N   P+ +T+ T++    K  ++ 
Sbjct: 231 FSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVL 290

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+    EM R G+  N +TYN L+ G     ++D+A  L  +M     ++P++V++N L
Sbjct: 291 AAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMV-GLGLKPNIVTFNAL 349

Query: 329 IDGFI----------LIDDSA------GALTF-------------------FNEMRARGI 353
           I+GF           L DD A       A+TF                    N M   GI
Sbjct: 350 INGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGI 409

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P   +Y  L+     +   + A K+ +EM  +  +K D+V +N+L+ G+C+ G   +A+
Sbjct: 410 FPNVSTYNCLIAGLCRNQNVRAAKKLLNEM-ENYELKADVVTYNILIGGWCKDGEPSKAE 468

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           +++  M   G  PN  TY +L +G  +      AL      K R +++KEG  A+     
Sbjct: 469 KLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAAL------KVRTQMEKEGKRANVVTYN 522

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMF 529
            L         +   C +      A  ++  M E G+ PN+T Y  + +EM  + F
Sbjct: 523 VL---------IKGFC-KTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKGF 568



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 150/323 (46%), Gaps = 25/323 (7%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK--- 304
            P+  T+   ++ L KAG +++A  V+ ++   G   N +TYN L+ G+C++    K   
Sbjct: 197 QPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYR 256

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  +L+EM  + KI P+ +++N LIDGF   ++   A   F EM+ +G+ P  ++Y +L+
Sbjct: 257 ADAILKEMLAN-KICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLI 315

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
              + + +   A  ++D+M+    +K +IV +N L+ G+C+  +++EA+++ + + E   
Sbjct: 316 NGLSNNGKLDEAIALWDKMV-GLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDL 374

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKE----------RCEVKKEGVNADSDLPPP 474
            PN  T+ ++ +    A    E   L   + +           C +     N +      
Sbjct: 375 VPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKK 434

Query: 475 LKPDEELLDALADICVRAAFF---------RKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
           L  + E  +  AD+                 KA +++  M   G+ PN   Y  + ++ +
Sbjct: 435 LLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTL-MDGY 493

Query: 526 SRMFTSKHASQARQDRRRERKRA 548
                 K A + R    +E KRA
Sbjct: 494 CMEGNLKAALKVRTQMEKEGKRA 516



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 23/284 (8%)

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
             RR +D        +   ++SALVK       + V  EM +  +  N  T+NI + G C
Sbjct: 152 VFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLC 211

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL----TFFNEMRARGI 353
           +  +++KA++++ ++       P++V+YN LIDG      SAG +        EM A  I
Sbjct: 212 KAGKLNKAEDVIEDIKAWG-FSPNIVTYNTLIDGHCK-KGSAGKMYRADAILKEMLANKI 269

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P +I++ TL+  F        A   F+EM R   +K +IV +N L+ G    G ++EA 
Sbjct: 270 CPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQG-LKPNIVTYNSLINGLSNNGKLDEAI 328

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            + ++M   G  PN+ T+ +L NG    +   EA  L+ +I            A+ DL P
Sbjct: 329 ALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDI------------AEQDLVP 376

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                  ++DA      +A    +   +   M + GI PN + Y
Sbjct: 377 NAITFNTMIDAFC----KAGMMEEGFALHNSMLDEGIFPNVSTY 416



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 34/289 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARA----SRK 109
           KP+   YN+++N  +N GK  + + L+D+M   G KP+++T+N +I   C +     +RK
Sbjct: 305 KPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARK 364

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIREL 168
                + + I E  +     TF +++ A+   G +E    +  +M  EG           
Sbjct: 365 -----LFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFP-------- 411

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++  Y+    G   + +    K L N +               +   Y  L+ G+  +G 
Sbjct: 412 NVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE--------LKADVVTYNILIGGWCKDGE 463

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
            S   ++LG M    +    P+HVTY T++      G++  A +V  +M + G  AN +T
Sbjct: 464 PSKAEKLLGEML---NVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVT 520

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDA----KIEPDVVSYNILIDGFI 333
           YN+L+KG+C+  +++ A  LL EM +      +   DVV   +L  GFI
Sbjct: 521 YNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKGFI 569



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 131/294 (44%), Gaps = 35/294 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P++  ++++++ L+ +G     E++ L+D +V               KP+   
Sbjct: 299 MQRQGLKPNIVTYNSLINGLSNNGKLD--EAIALWDKMVGL-----------GLKPNIVT 345

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA++N        K+  +LFD + E    P+ +T+N MI    +A        +   +L
Sbjct: 346 FNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSML 405

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR--EGRRDVCKIIRELDLEDYSSENE 178
           + GI   ++T+  L+A      ++  A+ ++  M   E + DV  +   + +  +  + E
Sbjct: 406 DEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADV--VTYNILIGGWCKDGE 463

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                     EKLL   +N   +         PN   Y TLM GY  EG +   +++   
Sbjct: 464 PSKA------EKLLGEMLNVGVK---------PNHVTYNTLMDGYCMEGNLKAALKVRTQ 508

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           M ++   A   + VTY  ++    K G ++ A ++L EM   G+  NR TY+++
Sbjct: 509 MEKEGKRA---NVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 22/184 (11%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A   F  ++  G   +  S   L+ A    ++      V+ EM++  R++ ++  +N+ +
Sbjct: 149 ACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKR-RIQPNLTTFNIFI 207

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            G C+ G + +A+ +IE +K  GF PN+ TY +L +G     K G A  +++        
Sbjct: 208 NGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHC---KKGSAGKMYR-------- 256

Query: 461 KKEGVNADSDLPPPLK----PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
                 AD+ L   L     P+E   + L D   +      A      M+  G+ PN   
Sbjct: 257 ------ADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVT 310

Query: 517 YKKI 520
           Y  +
Sbjct: 311 YNSL 314


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/498 (23%), Positives = 207/498 (41%), Gaps = 92/498 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T+ ++ +L A   +G     + LF Q+   G  P + T+ ++I      S       +
Sbjct: 53  PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE----LDLE 171
           L  IL+ G    + TF +++  +       I   I +A+     D C+ +       D  
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFC------INGMIFKAL-----DFCQNLLAQGYLFDQF 161

Query: 172 DYSSENEGDDDDDD-----EVFEKLLPNSINPS-----------SEPPLLPKTFAPNSRI 215
            Y +   G   +        + +++  +S+ P+            +   +       S+I
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 216 -----------YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                      Y +L+ G  + GR  +  ++L  M R+  +   PD  T+  ++ AL K 
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVD---PDDYTFNILIDALCKE 278

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +  A+ VLA M++ G   + +TYN L++GYC +  + +A+EL   M     +EPDV++
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRG-LEPDVLN 337

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM- 383
           YN+LIDG+        A+  F E+  + + PT  SY +L+     S +     K+ DEM 
Sbjct: 338 YNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397

Query: 384 ---------------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVE 410
                                            +    VK +IV +N +++GYC    V 
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN 457

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            AK I  RM ++G  P++  Y  L NG        EA++L+KE++ +            +
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHK------------N 505

Query: 471 LPPPLKPDEELLDALADI 488
           L P +     L+D L ++
Sbjct: 506 LIPDIASYNSLIDGLCNL 523



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 128/595 (21%), Positives = 251/595 (42%), Gaps = 91/595 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+SGY P++  ++T+++    +G             ++ +   F    +      D   
Sbjct: 116 ILKSGYQPNLVTFNTIINGFCING-------------MIFKALDFCQNLLAQGYLFDQFT 162

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N  +  G+ K  L L  +M +   +P+++ Y+ +I    +       + +  +I 
Sbjct: 163 YGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGR-----------RDVCKIIREL 168
           E GI L   T+ SL+      G   E+ + + + +RE               +CK  R L
Sbjct: 223 ERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282

Query: 169 ----------------DLEDYSSENEG-----DDDDDDEVFEKLLPNSINPSSE------ 201
                           D+  Y++  EG     +  +  E+F +++   + P         
Sbjct: 283 EAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 202 ----------------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                             L  K   P    Y +L+ G  N GR+S   ++L  M     +
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH---GS 399

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
           A  PD VTY  ++ AL K G +  A  VL  M + GV  N +TYN ++ GYC +  ++ A
Sbjct: 400 AQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA 459

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           K++   M     +EPD+++YN+LI+G+   +    A+  F EMR + + P   SY +L+ 
Sbjct: 460 KDIFNRMVKSG-LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLID 518

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                 +     ++ DEM  D     D++ +N+L++ +C+    ++A  +  ++ E G +
Sbjct: 519 GLCNLGRIPHVQELLDEMC-DSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIW 576

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           P+  T  ++ + +      GE L + ++  +              L     P+ +    L
Sbjct: 577 PDFYTNHAIVDNLC----KGEKLKMAEDALKHL------------LMHGCSPNVQTYTIL 620

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
            +   +   F +A+ +++ ME++  PP+   ++ I   +  R  T K A + R++
Sbjct: 621 INALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDK-AEKLREE 674



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/247 (18%), Positives = 99/247 (40%), Gaps = 22/247 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   YNA+++             +F++M + G +PD+L YNV+I    +       + 
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + +    +   + ++ SL+      G +   + ++  M +  +    I   + L+ + 
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC 556

Query: 175 SENEGDDDDD--DEVFEKLLPN-----------------SINPSSEPPLLPKTFAPNSRI 215
                D       ++ E + P+                  +   +   LL    +PN + 
Sbjct: 557 KTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQT 616

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           YT L+     +G   + + +L  M   EDN   PD +T+  ++  L++    D+A ++  
Sbjct: 617 YTILINALCKDGSFGEAMLLLSKM---EDNDRPPDAITFEIIIGVLLQRNETDKAEKLRE 673

Query: 276 EMTRIGV 282
           EM   G+
Sbjct: 674 EMIARGL 680


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 194/434 (44%), Gaps = 54/434 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ VL+  A        + LF  M   G   D+ +YN++I    R SR  + + V
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
           + ++++ G    + T  SL+  +     +  A  +V  M E   R DV      +D    
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID---- 182

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            S   G  +D  E+F+++  + +               ++  Y +L+ G    GR SD  
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRA-------------DAVTYNSLVAGLCCSGRWSDAA 229

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R++  M  ++     P+ +T+T V+   VK G    A ++  EMTR  V  +  TYN L+
Sbjct: 230 RLMRDMVMRD---IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 286

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C   ++D+AK++L  M     + PDVV+YN LI+GF            F EM  RG+
Sbjct: 287 NGLCMHGRVDEAKQMLDLMVTKGCL-PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL 345

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK----------------------- 390
               I+Y T+++ +  + +P  A ++F  M   P ++                       
Sbjct: 346 VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFE 405

Query: 391 --------VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
                   +DI  +N+++ G C++G VE+A  +   +   G  P+V +Y ++ +G    R
Sbjct: 406 NMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKR 465

Query: 443 KPGEALLLWKEIKE 456
           +  ++ LL+++++E
Sbjct: 466 QWDKSDLLYRKMQE 479



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 124/257 (48%), Gaps = 5/257 (1%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           + P+    ++L+ G+    RV D + ++  M   E+    PD V Y T++    K G ++
Sbjct: 135 YEPDVVTVSSLINGFCQGNRVFDAIDLVSKM---EEMGFRPDVVIYNTIIDGSCKIGLVN 191

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A ++   M R GV A+ +TYN L+ G C   +   A  L+R+M     I P+V+++  +
Sbjct: 192 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVM-RDIVPNVITFTAV 250

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ID F+     + A+  + EM  R + P   +Y +L+    +  +   A ++ D M+    
Sbjct: 251 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 310

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +  D+V +N L+ G+C+   V+E  ++   M + G   +  TY ++  G   A +P  A 
Sbjct: 311 LP-DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369

Query: 449 LLWKEIKERCEVKKEGV 465
            ++  +  R  ++   +
Sbjct: 370 EIFSRMDSRPNIRTYSI 386



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 193/446 (43%), Gaps = 41/446 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++S  LP +  +S V+S++A S         K +D+V+           V     D  +
Sbjct: 60  MIQSRPLPSIVDFSKVLSKIAKS---------KNYDLVISLFHHME----VCGIGHDLYS 106

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N      +    L +  +M +FG +PDV+T + +I    + +R    + ++ ++ 
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 166

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
           EMG    +  + +++      G +  A  +   M R+G R        L      S    
Sbjct: 167 EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWS 226

Query: 180 DDDD--DDEVFEKLLPNSINPSSEPPLLPK-----------------TFAPNSRIYTTLM 220
           D      D V   ++PN I  ++   +  K                    P+   Y +L+
Sbjct: 227 DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 286

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G    GRV +  +ML  M  +      PD VTY T+++   K+  +D   ++  EM + 
Sbjct: 287 NGLCMHGRVDEAKQMLDLMVTK---GCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  + ITYN +++GY Q  + D A+E+   M  D++  P++ +Y+IL+ G  +      
Sbjct: 344 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM--DSR--PNIRTYSILLYGLCMNWRVEK 399

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL  F  M+   I     +Y  ++         + A  +F   L    +K D+V++  ++
Sbjct: 400 ALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS-LSCKGLKPDVVSYTTMI 458

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYP 426
            G+CR    +++  +  +M+E+G  P
Sbjct: 459 SGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R S  V  L  + +       PD VT +++++   +   +  A  ++++M  +G   + +
Sbjct: 116 RCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVV 175

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            YN ++ G C+   ++ A EL   M  D  +  D V+YN L+ G       + A     +
Sbjct: 176 IYNTIIDGSCKIGLVNDAVELFDRMERDG-VRADAVTYNSLVAGLCCSGRWSDAARLMRD 234

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYC 404
           M  R I P  I++T ++  F    +   A K+++EM R   DP    D+  +N L+ G C
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDP----DVFTYNSLINGLC 290

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             G V+EAK++++ M   G  P+V TY +L NG   +++  E   L++E+ +R
Sbjct: 291 MHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 2/210 (0%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  V ++ V+S + K+ + D    +   M   G+  +  +YNI++   C+  +   A  +
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           + +M      EPDVV+ + LI+GF   +    A+   ++M   G  P  + Y T++    
Sbjct: 127 VGKMMKFG-YEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 185

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                  A ++FD M RD  V+ D V +N LV G C  G   +A R++  M      PNV
Sbjct: 186 KIGLVNDAVELFDRMERDG-VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNV 244

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERC 458
            T+ ++ +      K  EA+ L++E+  RC
Sbjct: 245 ITFTAVIDVFVKEGKFSEAMKLYEEMTRRC 274


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 201/466 (43%), Gaps = 45/466 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    + T+V  +   GD   V ++ L       +RK  +   VS   P+   
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGD--TVSALNL-------LRKMEE---VSHIIPNVVI 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A++++    G+      LF +M E G  PD+ TYN MI     + R      +L+ +L
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I+  + T+ +L+ A+V  G    AE +   M   R  +   I       YSS  +G 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTIT------YSSMIDG- 369

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLL--PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                  F K   N ++ +     L   K  +PN   + TL+ GY    R+ D + +L  
Sbjct: 370 -------FCK--QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    +     D  TY T++      G ++ A  +L EM   G+  + +T + LL G C 
Sbjct: 421 MT---ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 299 QLQIDKAKELLREMADDAK----------IEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             ++  A E+ + M    K          +EPDV +YNILI G I       A   + EM
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RGI P  I+Y++++      S+   A ++FD M        ++V +  L+ GYC+ G 
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGR 596

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           V++   +   M   G   N  TY +L  G         AL +++E+
Sbjct: 597 VDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 192/416 (46%), Gaps = 36/416 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +  +L+      +  + L  F QM E   +P+V+T+  ++    R  R    V +
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E    +  ++    + D S 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID-SL 265

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   D   +F ++         E  + P  F  NS I      G+ + GR SD  ++
Sbjct: 266 CKDGRHSDAQNLFTEM--------QEKGIFPDLFTYNSMIV-----GFCSSGRWSDAEQL 312

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ +   PD VTY  +++A VK G    A ++  EM   G+  N ITY+ ++ G
Sbjct: 313 LQEMLERKIS---PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +C+Q ++D A+ +   MA      P+++++N LIDG+     IDD    +   +EM   G
Sbjct: 370 FCKQNRLDAAEHMFYLMATKG-CSPNLITFNTLIDGYCGAKRIDD---GMELLHEMTETG 425

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +     +Y TL+  F L      A  +  EM+       DIV  + L++G C  G +++A
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP-DIVTCDTLLDGLCDNGKLKDA 484

Query: 413 KRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + + M++           NG  P+V TY  L +G+    K  EA  L++E+  R
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 184/431 (42%), Gaps = 45/431 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P +  +++++    +SG     E  +L   +++R  K S         PD   
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAE--QLLQEMLER--KIS---------PDVVT 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++NA    GK  +  +L+D+M   G  P+ +TY+ MI    + +R      +   + 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF +L+  Y G   ++    ++  M E            D   Y++   G 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVA-------DTTTYNTLIHG- 439

Query: 181 DDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                      L   +N + +    ++     P+     TL+ G  + G++ D + M   
Sbjct: 440 ---------FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 239 MRRQEDN--ASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           M++ + +  ASHP      D  TY  ++S L+  G    A ++  EM   G+  + ITY+
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++ G C+Q ++D+A ++   M   +   P+VV++  LI+G+         L  F EM  
Sbjct: 551 SMIDGLCKQSRLDEATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI    I+Y TL+  F        A  +F EM+        I   NML   + +    E
Sbjct: 610 RGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK----E 665

Query: 411 EAKRIIERMKE 421
           E KR +  +++
Sbjct: 666 ELKRAVAMLEK 676



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 123/281 (43%), Gaps = 17/281 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++ E      D  ++  ++        +  A     ++T++G+  + +T+  LL G C +
Sbjct: 103 QKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVE 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A +   +M +     P+VV++  L++G         A+   + M   G+ PT+I+
Sbjct: 163 DRVSEALDFFHQMFE-TTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T++           A  +  +M     +  ++V ++ +++  C+ G   +A+ +   M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +E G +P++ TY S+  G   + +  +A  L +E+ ER                 + PD 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLER----------------KISPDV 325

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +AL +  V+   F +A E+   M   GI PN   Y  +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 133/549 (24%), Positives = 238/549 (43%), Gaps = 83/549 (15%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVS------DSKPDTAAYNAVLNACANLGKP 74
           AA G   PV+ V  ++ +V    ++   D            PD   Y  ++    + G+ 
Sbjct: 100 AAEGSGSPVD-VFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRV 158

Query: 75  KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134
              L L D M   G +P+V+TY V+++   + S     + VL+ +   G T  + T+  +
Sbjct: 159 ADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVI 218

Query: 135 VAAYVGFGDLEIAETIVQAMREGRRDVCK-IIREL-------DLEDYSSENEGDD----- 181
           +                   REGR D  + ++  L       D   Y++  +G       
Sbjct: 219 INGMC---------------REGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRW 263

Query: 182 DDDDEVFEKLLPNSINPSSEP-PLLPKTF---------------------APNSRIYTTL 219
           DD +E+F +++  +  P+     +L + F                     A N+ +   +
Sbjct: 264 DDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIV 323

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +     +GRV D  + L  M     N   PD ++YTTV+  L +A   + A+++L EM R
Sbjct: 324 INSICKQGRVDDAFKFLNNMGSYGCN---PDTISYTTVLKGLCRAERWNDAKELLKEMVR 380

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
              P N +T+N  +   CQ+  I++A  L+ +M +       VV+YN L++GF +     
Sbjct: 381 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHG-CTVGVVTYNALVNGFCVQGHID 439

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKVDIVAWNM 398
            AL  F  M  +   P  I+YTTL+     + +   A ++  EML RD     ++V +N+
Sbjct: 440 SALELFRSMPCK---PNTITYTTLLTGLCNAERLDAAAELVAEMLHRD--CPPNVVTFNV 494

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           LV  +C+ G ++EA  ++E+M E+G  PN+ TY +L +GI+      +AL L   +  + 
Sbjct: 495 LVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSK- 553

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                GV+          PD     ++  I  +     +A+++    ++ G+ P    Y 
Sbjct: 554 -----GVS----------PDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYN 598

Query: 519 KIYVEMHSR 527
           KI + +  R
Sbjct: 599 KILLGLCKR 607



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 129/285 (45%), Gaps = 25/285 (8%)

Query: 235 MLGAMRRQEDNASH----PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + GA R  E +AS     PD    T ++  L + G    A +VL      G P +   YN
Sbjct: 55  LAGAARLVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYN 114

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ GYC+   +D A+ L+  M     + PD  +Y  LI         A AL+  ++M  
Sbjct: 115 TLVAGYCRYGHLDAARRLIGSM----PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLR 170

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RG  P  ++YT L++A   +S  + A  V DEM R      +IV +N+++ G CR G V+
Sbjct: 171 RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEM-RAKGCTPNIVTYNVIINGMCREGRVD 229

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A+ ++ R+   G  P+  +Y +L  G+  +++  +   L+ E+ E+             
Sbjct: 230 DARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK------------- 276

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                 P+E   D L     R     +A++++  M EH    N T
Sbjct: 277 ---NCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTT 318



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 97/499 (19%), Positives = 209/499 (41%), Gaps = 83/499 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVKRVRKFSD 47
           MLR G  P+V  ++ ++  +  +                G   ++  ++V++  + +   
Sbjct: 168 MLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGR 227

Query: 48  PDIVSD---------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            D   D          +PDT +Y  +L       +     +LF +M E    P+ +T+++
Sbjct: 228 VDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDM 287

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM---- 154
           +I+   R       + VL+++ E       T    ++ +    G ++ A   +  M    
Sbjct: 288 LIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYG 347

Query: 155 --------REGRRDVCKIIRELDLEDYSSENEGDDDDDDEV----FEKLLPNSINPSSEP 202
                       + +C+  R  D ++   E   ++   +EV    F  +L          
Sbjct: 348 CNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAI 407

Query: 203 PLLPKTFAPNSRI----YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
            L+ +       +    Y  L+ G+  +G +   + +  +M         P+ +TYTT++
Sbjct: 408 MLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM------PCKPNTITYTTLL 461

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + L  A  +D A +++AEM     P N +T+N+L+  +CQ+  +D+A EL+ +M +    
Sbjct: 462 TGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHG-C 520

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM-------------K 365
            P++++YN L DG      S  AL   + + ++G++P  I++++++             +
Sbjct: 521 TPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQ 580

Query: 366 AFALSS----QPK--LANKVFDEMLRDPRV--KVDIVAWN-------------MLVEGYC 404
            F L+     +PK  + NK+   + +   +   +D +A+              +L+EG  
Sbjct: 581 MFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLA 640

Query: 405 RMGLVEEAKRIIERMKENG 423
           R GL++EA+ ++  +   G
Sbjct: 641 REGLLKEAQDLLSMLCSRG 659


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 191/414 (46%), Gaps = 42/414 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+      +  + L LF QM     KP+V+T+  ++    R  R    V +
Sbjct: 48  PTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVAL 103

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E        I+  D+  YS+
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSH-----IKP-DVVIYSA 157

Query: 176 -----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                  +G   D   +F ++    I              P+   Y+ ++ G+ + G+ S
Sbjct: 158 IIDGLWKDGRHTDAQNLFIEMQDKGI-------------FPDIVTYSCMINGFCSSGKWS 204

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  R+L  M  ++ +   PD VT++ +++ALVK G ++ A+ +L EM   GV  N +T N
Sbjct: 205 EAQRLLQEMLVRKIS---PDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCN 261

Query: 291 ILLKGYCQQLQIDKAKELLREMAD-----DAK-----IEPDVVSYNILIDGFILIDDSAG 340
            LL G C   ++  A E+ + M       DA      +EPDV +YNILI G I       
Sbjct: 262 TLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLE 321

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A   + EM  RGI P  ++Y++++      S+   A ++FD M        +IV +N L+
Sbjct: 322 AEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSM-GSKSFSPNIVTFNTLI 380

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            GYC+ G+V++   +   M   G   N  TY +L  G         +L +++E+
Sbjct: 381 TGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 155/312 (49%), Gaps = 13/312 (4%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P    + TL+ G   E RVS+ + +   M +       P+ VT+TT+++ L + G + 
Sbjct: 46  FHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCK-------PNVVTFTTLMNGLCREGRVV 98

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +L  M   G+  N+ITY  ++ G C+      A  LLR+M + + I+PDVV Y+ +
Sbjct: 99  EAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAI 158

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG         A   F EM+ +GI P  ++Y+ ++  F  S +   A ++  EML   +
Sbjct: 159 IDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV-RK 217

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +  D+V ++ L+    + G +  A+ +++ M  +G  PNV T  +L +G+  + K  +AL
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDAL 277

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            ++K + ++  +  +  +A + + P ++    L+  L    +    F +A E+   M   
Sbjct: 278 EMFKAM-QKSMMDIDATHAFNGVEPDVQTYNILISGL----INEGKFLEAEELYEEMPHR 332

Query: 509 GIPPNKTKYKKI 520
           GI P+   Y  +
Sbjct: 333 GIVPDTVTYSSM 344



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 183/432 (42%), Gaps = 81/432 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+   + T+V  +   GD   V ++ L       +RK  +   +S  KPD   
Sbjct: 107 MVEDGLQPNQITYGTIVDGMCKMGD--TVSALNL-------LRKMEE---LSHIKPDVVI 154

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A+++     G+      LF +M + G  PD++TY+ MI     + +      +L+ +L
Sbjct: 155 YSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEML 214

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              I+  + TF  L+ A V  GDL  A+ ++Q M                          
Sbjct: 215 VRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM-------------------------- 248

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   +     PN     TL+ G  + G++ D + M  AM+
Sbjct: 249 ------------------------ISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284

Query: 241 RQ--EDNASH------PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +   + +A+H      PD  TY  ++S L+  G    A ++  EM   G+  + +TY+ +
Sbjct: 285 KSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSM 344

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMR 349
           + G C+Q ++D+A ++   M   +   P++V++N LI G+    ++DD    L  F EM 
Sbjct: 345 INGLCKQSRLDEATQMFDSMGSKS-FSPNIVTFNTLITGYCKAGMVDD---GLELFCEMG 400

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RGI    I+Y TL++ F        +  +F EM+        I   NML   + +    
Sbjct: 401 RRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSK---- 456

Query: 410 EEAKRIIERMKE 421
           EE KR +  ++E
Sbjct: 457 EELKRALAMLEE 468



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 114/264 (43%), Gaps = 21/264 (7%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  ++  ++        +  A     ++T++G     +T+N LL G C + ++ +A +L 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M      +P+VV++  L++G         A+   + M   G+ P +I+Y T++     
Sbjct: 74  HQMC-----KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCK 128

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                 A  +  +M     +K D+V ++ +++G  + G   +A+ +   M++ G +P++ 
Sbjct: 129 MGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIV 188

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY  + NG   + K  EA  L +E+  R                 + PD      L +  
Sbjct: 189 TYSCMINGFCSSGKWSEAQRLLQEMLVR----------------KISPDVVTFSGLINAL 232

Query: 490 VRAAFFRKALEIVACMEEHGIPPN 513
           V+      A +++  M   G+ PN
Sbjct: 233 VKEGDLNSAQDLLQEMISSGVCPN 256



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 20/201 (9%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           +I  D+ S+NILI  F        AL+ F ++   G  PT +++ TL+    +  +   A
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +F +M      K ++V +  L+ G CR G V EA  +++RM E+G  PN  TYG++ +
Sbjct: 70  LDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+        AL L ++++E   +               KPD  +  A+ D   +     
Sbjct: 125 GMCKMGDTVSALNLLRKMEELSHI---------------KPDVVIYSAIIDGLWKDGRHT 169

Query: 497 KALEIVACMEEHGIPPNKTKY 517
            A  +   M++ GI P+   Y
Sbjct: 170 DAQNLFIEMQDKGIFPDIVTY 190



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 20/133 (15%)

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           ++  DI ++N+L++ +C    +  A     ++ + GF+P + T+ +L +G+ +  +  EA
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           L L+ ++                     KP+      L +   R     +A+ ++  M E
Sbjct: 70  LDLFHQM--------------------CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVE 109

Query: 508 HGIPPNKTKYKKI 520
            G+ PN+  Y  I
Sbjct: 110 DGLQPNQITYGTI 122


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 180/390 (46%), Gaps = 24/390 (6%)

Query: 47  DPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA 106
           D  +    +PD   Y  V+N     G       L ++M +   +P VL YN +I    + 
Sbjct: 5   DRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKY 64

Query: 107 SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKI 164
                 + + + +   GI   + T+ SL++    +G    A  ++  M  R+   DV   
Sbjct: 65  KHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 124

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
              +D    +   EG   + ++++++++  SI+PS                Y++L+ G+ 
Sbjct: 125 SALID----AFVKEGKLVEAEKLYDEMVKRSIDPSIVT-------------YSSLINGFC 167

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
              R+ +  +M   M  +      PD VTY T++    K   ++   +V  EM++ G+  
Sbjct: 168 MHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 224

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N +TYNIL++G  Q    D A+E+ +EM  D  + P++++YN L+DG         A+  
Sbjct: 225 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVV 283

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F  ++   + PT  +Y  +++    + + +    +F   L    VK D+VA+N ++ G+C
Sbjct: 284 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN-LSLKGVKPDVVAYNTMISGFC 342

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           R G  EEA  + + MKE+G  PN   Y +L
Sbjct: 343 RKGSKEEADALFKEMKEDGTLPNSGCYNTL 372



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 190/444 (42%), Gaps = 73/444 (16%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
           + L D+M   G +PD++TY V++  LC R                               
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKR------------------------------- 29

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
                GD ++A  ++  M +G+ +   +I    ++        DD             ++
Sbjct: 30  -----GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDD-------------AL 71

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
           N   E  +  K   PN   Y++L+    N GR SD  R+L  M  ++ N   PD  T++ 
Sbjct: 72  NLFKE--METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN---PDVFTFSA 126

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++ A VK G +  A ++  EM +  +  + +TY+ L+ G+C   ++D+AK++   M    
Sbjct: 127 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 186

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
              PDVV+YN LI GF         +  F EM  RG+    ++Y  L++    +    +A
Sbjct: 187 CF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 245

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            ++F EM+ D  V  +I+ +N L++G C+ G +E+A  + E ++ +   P + TY  +  
Sbjct: 246 QEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 304

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+  A K  +   L+      C +  +GV          KPD    + +     R     
Sbjct: 305 GMCKAGKVEDGWDLF------CNLSLKGV----------KPDVVAYNTMISGFCRKGSKE 348

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
           +A  +   M+E G  PN   Y  +
Sbjct: 349 EADALFKEMKEDGTLPNSGCYNTL 372



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 160/407 (39%), Gaps = 79/407 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +  +  VV+ L   GD          D+    + K     +    +P    
Sbjct: 7   MVAKGCQPDLVTYGVVVNGLCKRGDT---------DLAFNLLNKMEQGKL----EPGVLI 53

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++           L LF +M   G +P+V+TY+ +I       R      +L  ++
Sbjct: 54  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 113

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD--LEDYSSENE 178
           E  I   + TF +L+ A+V  G L  AE +   M         + R +D  +  YSS   
Sbjct: 114 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM---------VKRSIDPSIVTYSSLIN 164

Query: 179 G-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           G       D+  ++FE              ++ K   P+   Y TL+KG+    RV + +
Sbjct: 165 GFCMHDRLDEAKQMFE-------------FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 211

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +    R         + VTY  ++  L +AG  D A+++  EM   GVP N +TYN LL
Sbjct: 212 EVF---REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 268

Query: 294 KGYCQQLQIDKA-------------------KELLREMADDAKIE--------------- 319
            G C+  +++KA                     ++  M    K+E               
Sbjct: 269 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 328

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           PDVV+YN +I GF        A   F EM+  G  P    Y TL++A
Sbjct: 329 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 375



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 141/347 (40%), Gaps = 67/347 (19%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V  +S ++      G    VE+ KL+D +VKR     DP IV+        Y++++N 
Sbjct: 119 PDVFTFSALIDAFVKEGK--LVEAEKLYDEMVKRS---IDPSIVT--------YSSLING 165

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
                +  +  Q+F+ M      PDV+TYN +IK   +  R    + V   + + G+   
Sbjct: 166 FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 225

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             T+  L+      GD ++A+                                     E+
Sbjct: 226 TVTYNILIQGLFQAGDCDMAQ-------------------------------------EI 248

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F++++ + +              PN   Y TL+ G    G++   + +   ++R +    
Sbjct: 249 FKEMVSDGV-------------PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK---M 292

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P   TY  ++  + KAG ++    +   ++  GV  + + YN ++ G+C++   ++A  
Sbjct: 293 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADA 352

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           L +EM +D  + P+   YN LI   +   D   +     EMR+ G A
Sbjct: 353 LFKEMKEDGTL-PNSGCYNTLIRARLRDGDREASAELIKEMRSCGFA 398



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P++  ++T++  L     +G +E   +    ++R          S  +P    
Sbjct: 252 MVSDGVPPNIMTYNTLLDGLCK---NGKLEKAMVVFEYLQR----------SKMEPTIYT 298

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++      GK +    LF  +   G KPDV+ YN MI    R   K     + + + 
Sbjct: 299 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 358

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           E G       + +L+ A +  GD E +  +++ MR
Sbjct: 359 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 393


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 201/466 (43%), Gaps = 45/466 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    + T+V  +   GD   V ++ L       +RK  +   VS   P+   
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGD--TVSALNL-------LRKMEE---VSHIIPNVVI 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A++++    G+      LF +M E G  PD+ TYN MI     + R      +L+ +L
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I+  + T+ +L+ A+V  G    AE +   M   R  +   I       YSS  +G 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTIT------YSSMIDG- 369

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLL--PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                  F K   N ++ +     L   K  +PN   + TL+ GY    R+ D + +L  
Sbjct: 370 -------FCK--QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    +     D  TY T++      G ++ A  +L EM   G+  + +T + LL G C 
Sbjct: 421 MT---ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 299 QLQIDKAKELLREMADDAK----------IEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             ++  A E+ + M    K          +EPDV +YNILI G I       A   + EM
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RGI P  I+Y++++      S+   A ++FD M        ++V +  L+ GYC+ G 
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGR 596

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           V++   +   M   G   N  TY +L  G         AL +++E+
Sbjct: 597 VDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 193/416 (46%), Gaps = 36/416 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +  +L+      +  + L LF QM E   +P+V+T+  ++    R  R    V +
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E    +  ++    + D S 
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID-SL 265

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   D   +F ++         E  + P  F  NS I      G+ + GR SD  ++
Sbjct: 266 CKDGRHSDAQNLFTEM--------QEKGIFPDLFTYNSMIV-----GFCSSGRWSDAEQL 312

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ +   PD VTY  +++A VK G    A ++  EM   G+  N ITY+ ++ G
Sbjct: 313 LQEMLERKIS---PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +C+Q ++D A+ +   MA      P+++++N LIDG+     IDD    +   +EM   G
Sbjct: 370 FCKQNRLDAAEHMFYLMATKG-CSPNLITFNTLIDGYCGAKRIDD---GMELLHEMTETG 425

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +     +Y TL+  F L      A  +  EM+       DIV  + L++G C  G +++A
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCP-DIVTCDTLLDGLCDNGKLKDA 484

Query: 413 KRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + + M++           NG  P+V TY  L +G+    K  EA  L++E+  R
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 184/431 (42%), Gaps = 45/431 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P +  +++++    +SG     E  +L   +++R  K S         PD   
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAE--QLLQEMLER--KIS---------PDVVT 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++NA    GK  +  +L+D+M   G  P+ +TY+ MI    + +R      +   + 
Sbjct: 328 YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMA 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF +L+  Y G   ++    ++  M E            D   Y++   G 
Sbjct: 388 TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVA-------DTTTYNTLIHG- 439

Query: 181 DDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                      L   +N + +    ++     P+     TL+ G  + G++ D + M   
Sbjct: 440 ---------FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490

Query: 239 MRRQEDN--ASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           M++ + +  ASHP      D  TY  ++S L+  G    A ++  EM   G+  + ITY+
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++ G C+Q ++D+A ++   M   +   P+VV++  LI+G+         L  F EM  
Sbjct: 551 SMIDGLCKQSRLDEATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI    I+Y TL+  F        A  +F EM+        I   NML   + +    E
Sbjct: 610 RGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK----E 665

Query: 411 EAKRIIERMKE 421
           E KR +  +++
Sbjct: 666 ELKRAVAMLEK 676



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 123/281 (43%), Gaps = 17/281 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++ E      D  ++  ++        +  A     ++T++G+  + +T+  LL G C +
Sbjct: 103 QKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVE 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A  L  +M +     P+VV++  L++G         A+   + M   G+ PT+I+
Sbjct: 163 DRVSEALNLFHQMFE-TTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T++           A  +  +M     +  ++V ++ +++  C+ G   +A+ +   M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +E G +P++ TY S+  G   + +  +A  L +E+ ER                 + PD 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLER----------------KISPDV 325

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +AL +  V+   F +A E+   M   GI PN   Y  +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/477 (24%), Positives = 226/477 (47%), Gaps = 44/477 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PD    N ++N   ++G+      +  ++ + G  PD +T N +IK LC +   K  L 
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  +++L  G  L   ++ +L+      GD   A  +++ + +GR      + + ++E Y
Sbjct: 151 F-HDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKI-DGR------LTKPNVEMY 202

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S+        D     +L+  +    SE  +  K  + +   Y+TL+ G+  EG++ + +
Sbjct: 203 ST------IIDALCKYQLVSEAYGLFSE--MTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M  +  N   P+  TY  +V AL K G +  A+ VLA M +  V  + ITY+ L+
Sbjct: 255 GLLNEMVLKTIN---PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLM 311

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRA 350
            GY    ++ KA+ +   M+    + PDV +Y ILI+GF    ++D+   AL  F EM  
Sbjct: 312 DGYFLVYEVKKAQHVFNAMS-LMGVTPDVHTYTILINGFCKNKMVDE---ALNLFKEMHQ 367

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + + P  ++Y++L+     S +      + DEM RD     D++ ++ L++G C+ G ++
Sbjct: 368 KNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM-RDRGQPADVITYSSLIDGLCKNGHLD 426

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            A  +  +MK+    PN+ T+  L +G+    +  +A    +E+ +    K   +N  + 
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDA----QEVFQDLLTKGYHLNVYT- 481

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
                       + + +   +     +AL +++ ME++G  PN   ++ I + +  +
Sbjct: 482 -----------YNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKK 527



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 198/449 (44%), Gaps = 82/449 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L  G+  +  +++T+++ +   GD     ++KL   +  R+           +KP+   
Sbjct: 155 LLAQGFQLNQVSYATLINGVCKIGDTRG--AIKLLRKIDGRL-----------TKPNVEM 201

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+ +++A        +   LF +M   G   DV+TY+ +I   C     K  +  + E +
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+  I   + T+  LV A    G ++ A++++  M        K   + D+  YS+  +G
Sbjct: 262 LKT-INPNVYTYNILVDALCKEGKVKEAKSVLAVML-------KACVKPDVITYSTLMDG 313

Query: 180 -----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                +      VF  +            L+  T  P+   YT L+ G+     V + + 
Sbjct: 314 YFLVYEVKKAQHVFNAM-----------SLMGVT--PDVHTYTILINGFCKNKMVDEALN 360

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M ++      P  VTY++++  L K+G +     ++ EM   G PA+ ITY+ L+ 
Sbjct: 361 LFKEMHQKN---MVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLID 417

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+   +D+A  L  +M D  +I P++ ++ IL+DG        G L            
Sbjct: 418 GLCKNGHLDRAIALFNKMKDQ-EIRPNIFTFTILLDGLC----KGGRL------------ 460

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                              K A +VF ++L      +++  +N+++ G+C+ GL+EEA  
Sbjct: 461 -------------------KDAQEVFQDLLTKGY-HLNVYTYNVMINGHCKQGLLEEALT 500

Query: 415 IIERMKENGFYPNVATYGSLANGISLARK 443
           ++ +M++NG  PN  T+ ++   I+L +K
Sbjct: 501 MLSKMEDNGCIPNAFTFETII--IALFKK 527



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 37/243 (15%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R E     PD +T   +++     G +     VLA++ + G P + +T N L+KG C +
Sbjct: 83  HRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLK 142

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT---------------- 343
            Q+ KA     ++      + + VSY  LI+G   I D+ GA+                 
Sbjct: 143 GQVKKALHFHDKLLAQG-FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEM 201

Query: 344 -------------------FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
                               F+EM  +GI+   ++Y+TL+  F +  + K A  + +EM+
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               +  ++  +N+LV+  C+ G V+EAK ++  M +    P+V TY +L +G  L  + 
Sbjct: 262 LKT-INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEV 320

Query: 445 GEA 447
            +A
Sbjct: 321 KKA 323



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 119/295 (40%), Gaps = 31/295 (10%)

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           VS   RML  MR        P  + +  ++ +  K      A  +   +   G+  + IT
Sbjct: 44  VSQFNRML-CMRHT------PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
            NIL+  +C   QI     +L ++       PD V+ N LI G  L      AL F +++
Sbjct: 97  LNILINCFCHMGQITFGFSVLAKILKRG-YPPDTVTLNTLIKGLCLKGQVKKALHFHDKL 155

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVF---DEMLRDPRVKVDIVAWNMLVEGYCR 405
            A+G    ++SY TL+         + A K+    D  L  P V++    ++ +++  C+
Sbjct: 156 LAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEM----YSTIIDALCK 211

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
             LV EA  +   M   G   +V TY +L  G  +  K  EA+ L  E+  +        
Sbjct: 212 YQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLK-------- 263

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    + P+    + L D   +    ++A  ++A M +  + P+   Y  +
Sbjct: 264 --------TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 135/305 (44%), Gaps = 33/305 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF- 114
           P+   YN +++A    GK K+   +   M +   KPDV+TY+ ++         + LV+ 
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD-------GYFLVYE 319

Query: 115 ------VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 V   +  MG+T  + T+  L+  +     ++ A  + + M + +  V  I+   
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQ-KNMVPGIVT-- 376

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
               YSS  +G        +   L + +    +P         +   Y++L+ G    G 
Sbjct: 377 ----YSSLIDGLCKSGRIPYVWDLIDEMRDRGQPA--------DVITYSSLIDGLCKNGH 424

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +   + +   M+ QE     P+  T+T ++  L K G +  A++V  ++   G   N  T
Sbjct: 425 LDRAIALFNKMKDQE---IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYT 481

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN+++ G+C+Q  +++A  +L +M D+  I P+  ++  +I      D++  A     +M
Sbjct: 482 YNVMINGHCKQGLLEEALTMLSKMEDNGCI-PNAFTFETIIIALFKKDENDKAEKLLRQM 540

Query: 349 RARGI 353
            ARG+
Sbjct: 541 IARGL 545



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 40/297 (13%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  ++ +V  L   G     +SV    V++K           +  KPD   Y+ +++ 
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSV--LAVMLK-----------ACVKPDVITYSTLMDG 313

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
              + + KK   +F+ M   G  PDV TY ++I    +       + + + + +  +   
Sbjct: 314 YFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
           + T+ SL+      G +     ++  MR+ R     +I    L D   +N G  D    +
Sbjct: 374 IVTYSSLIDGLCKSGRIPYVWDLIDEMRD-RGQPADVITYSSLIDGLCKN-GHLDRAIAL 431

Query: 188 FEKLLPNSINPS----------------------SEPPLLPKTFAPNSRIYTTLMKGYMN 225
           F K+    I P+                          LL K +  N   Y  ++ G+  
Sbjct: 432 FNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCK 491

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           +G + + + ML  M   EDN   P+  T+ T++ AL K    D+A ++L +M   G+
Sbjct: 492 QGLLEEALTMLSKM---EDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 225/534 (42%), Gaps = 84/534 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVV--------------------- 39
           M + G+ P   A++T++  LA +G     E++K+ D ++                     
Sbjct: 251 MEKCGFPPDAIAYNTMIDGLAKAGH--AQEALKVLDNMLAKACVPTEVTYGILVNSLCKA 308

Query: 40  ---KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
              +R  +       S  +P++  Y ++++  A  G+ K+   LFD+M E G +PDV+T+
Sbjct: 309 GTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITH 368

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-- 154
            VMI    ++          E ++  G    + T+ +++      G +  A  I++ M  
Sbjct: 369 TVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIA 428

Query: 155 ------------------REGRRD-VCKIIRELD-------LEDYSSENEGDDDDD---- 184
                             + GR D   +++ ELD       L+ YSS   G  D      
Sbjct: 429 HGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEK 488

Query: 185 --DEVFE--KLLPNSINPSSEPPL---LPKT-----------------FAPNSRIYTTLM 220
             D++FE  K    +++P     +   L KT                   P++  Y  L+
Sbjct: 489 TLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILI 548

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G +   R +   R    +   E     PD VTYT +   L K G +DRA ++L E +  
Sbjct: 549 NG-LCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSR 607

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G  A+ + Y  L  G C Q Q+D+A  L +EM       PD  +Y  +I+G I +     
Sbjct: 608 GWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGG-APDAAAYCCIINGLIKVKKLED 666

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A  FF+EM  +G  PT  +YT L++A   +     A   F+ ML    +   ++ ++ L+
Sbjct: 667 ACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALI 726

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            G+C+   V+ A ++ E M   G  P   T  SL +G+  + K  +A  L +E+
Sbjct: 727 HGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEM 780



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 159/391 (40%), Gaps = 60/391 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD A + A++       + K+  ++F QM + G  PD + YN MI   A+A      + V
Sbjct: 223 PDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKV 282

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +L         T+  LV +    G LE AE + + M                     
Sbjct: 283 LDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMA-------------------- 322

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            F PNS IYT+L+ G+   GR+ +   +
Sbjct: 323 ------------------------------ASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M    +    PD +T+T ++  L K+G+ ++A +   EM R G   N +TY  +++G
Sbjct: 353 FDEM---VEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQG 409

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +  ++  A  +++ M       PD V+Y  L+DGF  +     A    +E+     +P
Sbjct: 410 LSKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSP 468

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM---LVEGYCRMGLVEEA 412
               Y++L+             K  D++    +   + +   +   ++ G C+ G ++EA
Sbjct: 469 NLQLYSSLVNGLCDGGS---VEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEA 525

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARK 443
            RI +RM   G  P+  TY  L NG+  +R+
Sbjct: 526 CRIFQRMVSEGCKPDATTYNILINGLCRSRE 556



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 41/285 (14%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L    APN+  +  L++ +    R  D V     M+R+      PD  T+  +V  L K
Sbjct: 145 MLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKR---CKPDLHTFLILVDCLCK 201

Query: 264 AGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           AG  ++A +V  EM  +G VP +R  +  +++   +  ++ +A+E+  +M +     PD 
Sbjct: 202 AGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQM-EKCGFPPDA 260

Query: 323 VSYNILIDGF-----------------------------ILIDD--SAGAL----TFFNE 347
           ++YN +IDG                              IL++    AG L      F  
Sbjct: 261 IAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRV 320

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M A G  P  + YT+L+  FA S + K A  +FDEM+ +   + D++   ++++G C+ G
Sbjct: 321 MAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV-EAGYRPDVITHTVMIDGLCKSG 379

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
             E+A +  E M   G  PNV TY ++  G+S   +   A  + K
Sbjct: 380 NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMK 424



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 119/314 (37%), Gaps = 54/314 (17%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E      D  TY  +++ LV   +  +   +  EM + G+  N  ++NIL++ + +  + 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-------- 354
           D A     E+    + +PD+ ++ IL+D          A   F+EM A G          
Sbjct: 171 DDAVTCF-EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHT 229

Query: 355 ----------------------------PTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
                                       P  I+Y T++   A +   + A KV D ML  
Sbjct: 230 AMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAK 289

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V  + V + +LV   C+ G +E A+ +   M  +GF PN   Y SL +G + + +  E
Sbjct: 290 ACVPTE-VTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKE 348

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  L+ E+ E                   +PD      + D   ++  F +A +    M 
Sbjct: 349 ACSLFDEMVE----------------AGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMM 392

Query: 507 EHGIPPNKTKYKKI 520
             G  PN   Y  I
Sbjct: 393 RGGCKPNVVTYTTI 406


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 132/544 (24%), Positives = 236/544 (43%), Gaps = 62/544 (11%)

Query: 3   RSGYL-PHVKAWSTVVSRLAASGDDGPVESVKLF-DVVVKRVRKFSDPDIVSDSKPDTAA 60
           R G++ P ++A + V+S LA S    P  S+ +F  ++  R+             P+   
Sbjct: 165 RRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLH------------PNHYT 212

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N +++   + G     L     M  FG  PDV+TYN ++K   R         +L R+ 
Sbjct: 213 FNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMK 272

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE---------------GRRDVCKII 165
           + GI     T+ +LV+AY   G ++ A  +V+AM                 G     K+ 
Sbjct: 273 KEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVD 332

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLL---------PNSINPSSEPPLLPKTFAPNSRIY 216
               L+D   E+      D   +  L+          +++N   E  +  K    +   +
Sbjct: 333 EAFKLKD-EMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEE--MRDKGVKSSLVTH 389

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++KG   EG++ +    LG ++   +    PD +TY T++ A  KA ++ +A  ++ E
Sbjct: 390 NIVVKGLCREGQLEEA---LGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDE 446

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R G+  +  T N LL   C++ + ++A+ELLR       + PD VSY  ++  +   +
Sbjct: 447 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFV-PDEVSYGTVMAAYFKEN 505

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               AL  ++EM  R + P+  +Y TL+K      +   A    +E+++   V  D   +
Sbjct: 506 KPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVP-DDTTY 564

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N+++  YC+ G +E+A +   +M EN F P+V T  +L NG+ L  K  +A+ L++   E
Sbjct: 565 NIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAE 624

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           + +                K D    + L     +      AL   A ME  G+ P+   
Sbjct: 625 KGK----------------KVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFT 668

Query: 517 YKKI 520
           Y  +
Sbjct: 669 YNVV 672



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 189/438 (43%), Gaps = 59/438 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN +++AC    +    L L ++M + G K  ++T+N+++K   R  +    +  
Sbjct: 349 PDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGR 408

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-----------DVCK 163
           L+ + E G+   + T+ +L+ AY    ++  A  ++  M R G +           ++CK
Sbjct: 409 LKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 468

Query: 164 IIRELDLEDYSSENEGDDDDDDEV-FEKLLPNSINPSSEPPLL-------PKTFAPNSRI 215
             R  + E+            DEV +  ++      +   P L        +   P+   
Sbjct: 469 EKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYT 528

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+KG    G++++ +  L  + ++      PD  TY  ++ A  K G +++A Q   
Sbjct: 529 YNTLIKGLCTIGKLTEAIDKLNELMKK---GLVPDDTTYNIIIHAYCKEGDLEKAFQFHN 585

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M       + +T N L+ G C   +++KA +L    A+  K + DV++YN LI      
Sbjct: 586 KMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGK-KVDVITYNTLIQALCKD 644

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------------ 383
            D   AL FF +M ARG+ P   +Y  ++ A + + + + A  +  ++            
Sbjct: 645 GDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSY 704

Query: 384 ------------LRDPRVKVDI-----------VAWNMLVEGYCRMGLVEEAKRIIERMK 420
                        +DP VK D             ++N  V+  C  G ++EAK +++ M 
Sbjct: 705 PLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMM 764

Query: 421 ENGFYPNVATYGSLANGI 438
           + G   + +TY +L  G+
Sbjct: 765 QKGMSVDSSTYITLMEGL 782


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 216/452 (47%), Gaps = 38/452 (8%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++N     GKP++   +F+ + + G KP ++TY  ++    R      ++ ++ ++ E G
Sbjct: 19  LMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENG 78

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGDDD 182
           +      F S++ A+   G+++ A  + + M+E G +        L ++ Y   N G  +
Sbjct: 79  MKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTL-IKGYG--NAGKTE 135

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           +  ++ E L    + P             N R Y  L++ + N+  + +   M+  M   
Sbjct: 136 EALKLLEFLQDGGVKP-------------NQRTYNILVRAWCNKENMEEAWNMVYKMV-- 180

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
             +   PD VTY T+  A  + G   RA +++ EM    V  N  T +I++ GYC++  +
Sbjct: 181 -ASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNM 239

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A   +  M  +  + P++  +N LI GF+   D+ G       M   G+ P  ++++T
Sbjct: 240 VDASRFVFRM-KELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFST 298

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           +M A++ + +     ++F++M++   ++ DI A+++L +GY R G  E+A+ I+  M++ 
Sbjct: 299 IMNAWSSAGRMDKCKEIFNDMVK-AEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKY 357

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G +PNV    ++ +G   A K   A+ +++++   CE+          + P LK  E L+
Sbjct: 358 GVHPNVVICTTVISGWCSAGKMEHAMKVYEKM---CEI---------GVSPNLKTYETLI 405

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNK 514
               +    A    KA E++  MEE G+ P K
Sbjct: 406 WGYGE----AKQPLKAEELLQVMEEKGVFPKK 433



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/469 (23%), Positives = 207/469 (44%), Gaps = 76/469 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+V+ L            KLF  +++ + K  +  +    KPD+  
Sbjct: 39  LMDEGHKPTLITYTTLVAALTRQ---------KLFKSILRLISKVEENGM----KPDSIL 85

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N+++NA +  G  K+ ++LF +M E G KP   T+N +IK    A +    + +LE + 
Sbjct: 86  FNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQ 145

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+  LV A+    ++E A  +V  M                          
Sbjct: 146 DGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKM-------------------------- 179

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   +     P++  Y TL + Y  +G   +T+R    + 
Sbjct: 180 ------------------------VASGMQPDAVTYNTLARAYAEKG---ETIRAEEMIL 212

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    P+  T + +V+   K G+M  A + +  M  +GV  N   +N L+KG+   +
Sbjct: 213 EMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTM 272

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL----TFFNEMRARGIAPT 356
             +   E+L  M ++  + PDVV+++ +++ +     SAG +      FN+M    I P 
Sbjct: 273 DTEGVDEVLTLMEENG-VRPDVVTFSTIMNAW----SSAGRMDKCKEIFNDMVKAEIEPD 327

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +++ L K +  + +P+ A  +   M R   V  ++V    ++ G+C  G +E A ++ 
Sbjct: 328 IHAFSILAKGYVRAGEPEKAESILTSM-RKYGVHPNVVICTTVISGWCSAGKMEHAMKVY 386

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
           E+M E G  PN+ TY +L  G   A++P +A  L + ++E+    K+G 
Sbjct: 387 EKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGT 435



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 17/159 (10%)

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           S T LM       +P+ A+ +F+ ++ D   K  ++ +  LV    R  L +   R+I +
Sbjct: 15  SRTKLMNVLIGKGKPREAHSIFNSLM-DEGHKPTLITYTTLVAALTRQKLFKSILRLISK 73

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           ++ENG  P+   + S+ N  S +    EA+ L++++KE                   KP 
Sbjct: 74  VEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKE----------------SGCKPT 117

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
               + L      A    +AL+++  +++ G+ PN+  Y
Sbjct: 118 TSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTY 156


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 205/470 (43%), Gaps = 38/470 (8%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP V+   +  + LAA    G      LF + V          +  +++P   +Y  ++ 
Sbjct: 72  LPSVRDAVSYNTVLAALCRQGGCLDAALFLLRV----------MAHETRPTAVSYTTLMR 121

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
           A     +  + + L   M   G +PDV+TY  +I+    A+     V +L  + E GI  
Sbjct: 122 ALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEP 181

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            +  +  L+  Y   G  E    + + M  GR     ++    L D S   EG      +
Sbjct: 182 NVVVYSCLLQGYCKAGRWECVSKVFEEM-SGRGIEPDVVMYTGLID-SLCREGKVKKATQ 239

Query: 187 VFEKLLPNSINP----------------------SSEPPLLPKTFAPNSRIYTTLMKGYM 224
           V +K++   + P                      S    +L K  A ++  Y TL+ G  
Sbjct: 240 VMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLS 299

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
               + + + +L  M   E     P+ VT+ +V+  L K G M +A QV   M   G   
Sbjct: 300 GVLEMDEAMGLLEEMIHGE-TMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCAC 358

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N +T+N+L+ G  +  ++ KA EL+ EMA    +EPD  +Y+ILI+GF  +     A + 
Sbjct: 359 NLVTFNLLIGGLLRVHKVKKAMELMDEMASSG-LEPDSFTYSILINGFCKMWQVDRAESL 417

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
            ++MR  GI P  + Y  L+ A       + A   FDEM ++   K+D+VA++ ++ G C
Sbjct: 418 LSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN--CKLDVVAYSTMIHGAC 475

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           R+   + A+  ++ M + G  P+  TY  L N  + +   G A  + K++
Sbjct: 476 RLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQM 525



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 183/420 (43%), Gaps = 34/420 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P+V  +S ++     +G          ++ V K   + S   I    +PD   
Sbjct: 174 MCESGIEPNVVVYSCLLQGYCKAGR---------WECVSKVFEEMSGRGI----EPDVVM 220

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++++    GK KK  Q+ D+M E G +P+V+TYNV+I  +C   S K  +      +
Sbjct: 221 YTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSL-RNNM 279

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           LE G+ L   T+ +L+    G  +++ A  +++ M  G   V   +   +   +     G
Sbjct: 280 LEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTG 339

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                 +V + +  N               A N   +  L+ G +   RV    + +  M
Sbjct: 340 RMRQAFQVRDMMAENGC-------------ACNLVTFNLLIGGLL---RVHKVKKAMELM 383

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                +   PD  TY+ +++   K   +DRA  +L++M R G+    + Y  LL   C+Q
Sbjct: 384 DEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQ 443

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +++A+    EM  + K+  DVV+Y+ +I G   + D   A  F   M   G+ P  ++
Sbjct: 444 GMMEQARNFFDEMHKNCKL--DVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVT 501

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+ L+  FA S     A +V  +M     V  D+  ++ L++GY   G  E+   +I  M
Sbjct: 502 YSMLINMFANSGDLGAAERVLKQMTASGFVP-DVAVFDSLIKGYGAKGDTEKVLELIREM 560



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 151/336 (44%), Gaps = 24/336 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P +  YTTLM+    E R    V   G +R  + +   PD VTY T++  L  A  +D+A
Sbjct: 111 PTAVSYTTLMRALCAERRTGQAV---GLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKA 167

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EM   G+  N + Y+ LL+GYC+  + +   ++  EM+    IEPDVV Y  LID
Sbjct: 168 VELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRG-IEPDVVMYTGLID 226

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A    ++M  RG+ P  ++Y  L+ +       K A  + + ML +  V 
Sbjct: 227 SLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNML-EKGVA 285

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERM--KENGFYPNVATYGSLANGISLARKPGEAL 448
           +D V +N L+ G   +  ++EA  ++E M   E    PNV T+ S+ +G           
Sbjct: 286 LDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHG----------- 334

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L K  + R   +   + A++     L     L+  L    +R    +KA+E++  M   
Sbjct: 335 -LCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGL----LRVHKVKKAMELMDEMASS 389

Query: 509 GIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRE 544
           G+ P+   Y  I +    +M+    A       RR+
Sbjct: 390 GLEPDSFTY-SILINGFCKMWQVDRAESLLSKMRRD 424



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 4/209 (1%)

Query: 250 DHVTYTTVVSALVK-AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           D V+Y TV++AL +  G +D A  +L  M     P   ++Y  L++  C + +  +A  L
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRP-TAVSYTTLMRALCAERRTGQAVGL 135

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           LR+M   + + PDVV+Y  LI G     D   A+    EM   GI P  + Y+ L++ + 
Sbjct: 136 LRDM-QASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYC 194

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + + +  +KVF+EM     ++ D+V +  L++  CR G V++A +++++M E G  PNV
Sbjct: 195 KAGRWECVSKVFEEM-SGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNV 253

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKER 457
            TY  L N +       EA+ L   + E+
Sbjct: 254 VTYNVLINSMCKEGSVKEAMSLRNNMLEK 282



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 118/285 (41%), Gaps = 57/285 (20%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRK-FSDPDIVSDS--KPDTAAYNAV 64
           P+V  +++V+  L  +G                R+R+ F   D+++++    +   +N +
Sbjct: 323 PNVVTFNSVIHGLCKTG----------------RMRQAFQVRDMMAENGCACNLVTFNLL 366

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +     + K KK ++L D+M   G +PD  TY+++I    +  +      +L ++   GI
Sbjct: 367 IGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGI 426

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD---- 180
              +  +  L+AA    G +E A      M +     CK    LD+  YS+   G     
Sbjct: 427 EPELVHYIPLLAALCEQGMMEQARNFFDEMHKN----CK----LDVVAYSTMIHGACRLR 478

Query: 181 DDDDDEVF------EKLLPNSINPS--------------SEPPLLPKT---FAPNSRIYT 217
           D    E F      E L+P+S+  S              +E  L   T   F P+  ++ 
Sbjct: 479 DRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFD 538

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
           +L+KGY  +G   DT ++L  +R         D    +T+ + LV
Sbjct: 539 SLIKGYGAKG---DTEKVLELIREMTAKDIALDSKIISTIYTCLV 580


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 205/486 (42%), Gaps = 79/486 (16%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           F V+ K ++    P IV+        +  ++N    +GK  + ++LFD M   G +PDV 
Sbjct: 153 FSVLAKIIKLGLQPTIVT--------FTTLINWLCKVGKFAQAMELFDDMVARGCRPDVY 204

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           TY  +I    +         +L+++ E G        Q  V  Y          TI+ + 
Sbjct: 205 TYTTIINGLCKIGETAAAAGLLKKMEEAGC-------QPNVVTY---------STIIDSH 248

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
           R+ RR    +   LD+  Y                              +  K  +P+  
Sbjct: 249 RKDRR----VNEALDIFSY------------------------------MKVKGISPDIF 274

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y +L++G  N  +  +   +L  MR        PD VT+  +V  + K G +  A+ VL
Sbjct: 275 TYNSLIQGLCNFSQWKEASALLNEMRSLN---IMPDIVTFNVLVDTICKEGKVSEAQGVL 331

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             MT +GV  + +TY+ L+ GY  + ++ +A++L   M      +PDV SYNILI+G+  
Sbjct: 332 KTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG-CKPDVFSYNILINGYCK 390

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
           +     A   FNEM  +G+ P  +SY TL+         + A  +F  M  +  +  ++ 
Sbjct: 391 VKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLP-NLF 449

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++L++G+C+ G   +A R+   M+     PN+  Y  L + +  +    +A  L+ E+
Sbjct: 450 TYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSEL 509

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
                               L+P+ ++   + +   +     +ALE    MEE G PP++
Sbjct: 510 ----------------FVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 553

Query: 515 TKYKKI 520
             Y  I
Sbjct: 554 ISYNVI 559



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/470 (22%), Positives = 206/470 (43%), Gaps = 39/470 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ G  P +  ++T+++ L   G     ++++LFD +V R             +PD   
Sbjct: 159 IIKLGLQPTIVTFTTLINWLCKVGKFA--QAMELFDDMVAR-----------GCRPDVYT 205

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G+      L  +M E G +P+V+TY+ +I    +  R +  + +   + 
Sbjct: 206 YTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMK 265

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ SL+     F   + A  ++  MR    ++   I   ++   +   EG 
Sbjct: 266 VKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRS--LNIMPDIVTFNVLVDTICKEGK 323

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   V + +    + P             +   Y++LM GY     V +  ++  AM 
Sbjct: 324 VSEAQGVLKTMTEMGVEP-------------DVVTYSSLMYGYSLRSEVVEARKLFDAMI 370

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD  +Y  +++   K   +D A+Q+  EM   G+  N ++YN L+ G CQ  
Sbjct: 371 TK---GCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLG 427

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            + +A+ L + M  +  + P++ +Y+IL+DGF        A   F  M++    P  + Y
Sbjct: 428 SLREARNLFKNMHTNGNL-PNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMY 486

Query: 361 TTLMKAFALSSQPKLANKVFDEML---RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             L+ A   S   + A K+F E+      P  ++    +  ++ G C+ GL++EA     
Sbjct: 487 NILIDAMCKSGNLRDARKLFSELFVKGLQPNAQI----YTTIINGLCKEGLLDEALEAFR 542

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            M+E+G  P+  +Y  +  G    +    A+ L  E++++  +   G  A
Sbjct: 543 NMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGTTA 592



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 127/301 (42%), Gaps = 32/301 (10%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R + D   H D  ++  +  AL     M         + R  +P   I +  LL    + 
Sbjct: 61  RNRRDKRKHDDACSFRNIDDALASFNHM---------LHRKPLPC-IIQFTKLLSAIVKM 110

Query: 300 LQI-DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
            Q  D    L ++M + A + P++ + +ILI+ F  +     A +   ++   G+ PT +
Sbjct: 111 GQYYDTVISLTKQM-ELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIV 169

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++TTL+       +   A ++FD+M+     + D+  +  ++ G C++G    A  ++++
Sbjct: 170 TFTTLINWLCKVGKFAQAMELFDDMVARG-CRPDVYTYTTIINGLCKIGETAAAAGLLKK 228

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CEVK- 461
           M+E G  PNV TY ++ +     R+  EAL ++  +K +                C    
Sbjct: 229 MEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQ 288

Query: 462 -KEGVNADSDLPP-PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
            KE     +++    + PD    + L D   +     +A  ++  M E G+ P+   Y  
Sbjct: 289 WKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSS 348

Query: 520 I 520
           +
Sbjct: 349 L 349


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 196/462 (42%), Gaps = 71/462 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  + +A   +   K  + L  QM   G   DVL+  ++I    R         V
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSV 148

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +I+++G+   + TF +L+  +   G                    KI R ++L D   
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEG--------------------KIGRAIELFDV-- 186

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                       ++ + + PN   Y+ ++KG    G+ ++ +++
Sbjct: 187 ----------------------------MVARGYKPNVHSYSIIIKGLCRVGKTTEVIKL 218

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M+        PD V Y T+V  L K   ++ A  +  +M   G+    +TY  L+ G
Sbjct: 219 LEHMKVV---GCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHG 275

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
                +  +A  LL EM     I PD+V++++LID      + + A      M   G+ P
Sbjct: 276 LRNLGRWKEAFGLLNEM-KGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEP 334

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +Y TLM  + L  +   A KVF+ M+   R+  D+ ++++LV GYC+   ++EAK++
Sbjct: 335 DVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMP-DVFSFSILVNGYCKAKRIDEAKQL 393

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            + M   G  P+  +Y +L +G+  AR+P EA  L+K++              +  PP L
Sbjct: 394 FDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMH------------SNGYPPNL 441

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                LLD L+    +  +  +A+ +   ME  G+ P+   Y
Sbjct: 442 VTYSILLDCLS----KQGYLDQAMGLFRAMENSGLKPDLVTY 479



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 180/427 (42%), Gaps = 68/427 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ G  P+V  +ST+++     G  G   +++LFDV+V R             KP+  +
Sbjct: 152 IIKLGLEPNVITFSTLINGFCIEGKIG--RAIELFDVMVAR-----------GYKPNVHS 198

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++     +GK  + ++L + M   G +PDV+ YN ++    +    +  V +  ++ 
Sbjct: 199 YSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMK 258

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+ SL+      G  + A  ++  M+ G                       
Sbjct: 259 GTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGN---------------------- 296

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                  ++P   A     ++ L+     EG VS+   +L  M 
Sbjct: 297 -----------------------IMPDLVA-----FSVLIDIMCKEGEVSEARVILKTM- 327

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    PD  TY T+++       +  AR+V   M   G   +  +++IL+ GYC+  
Sbjct: 328 --TEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAK 385

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID+AK+L  EM     I PD VSYN LI G         A   F +M + G  P  ++Y
Sbjct: 386 RIDEAKQLFDEMTHRGLI-PDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTY 444

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L+   +       A  +F  M  +  +K D+V +N++++G C+ G  ++A+ +   + 
Sbjct: 445 SILLDCLSKQGYLDQAMGLFRAM-ENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELS 503

Query: 421 ENGFYPN 427
             G  PN
Sbjct: 504 VKGLQPN 510



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 141/329 (42%), Gaps = 25/329 (7%)

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L A     +    P  V +  + SALV+         +  +M   G+  + ++  IL+  
Sbjct: 76  LSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINC 135

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+   +D    +L ++     +EP+V++++ LI+GF +      A+  F+ M ARG  P
Sbjct: 136 FCRLCHVDYGFSVLGKII-KLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKP 194

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              SY+ ++K      +     K+ + M +    + D+V +N +V+  C+  LV EA  I
Sbjct: 195 NVHSYSIIIKGLCRVGKTTEVIKLLEHM-KVVGCEPDVVIYNTIVDRLCKDRLVNEAVHI 253

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
             +MK  G  P V TY SL +G+    +  EA  L  E+K        G N        +
Sbjct: 254 FCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK--------GGN--------I 297

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
            PD      L DI  +     +A  I+  M E G+ P+   Y  +      RM       
Sbjct: 298 MPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRM----EVV 353

Query: 536 QARQ--DRRRERKRAAEAFKFWLGLPNSY 562
           +AR+  +    + R  + F F + L N Y
Sbjct: 354 EARKVFEVMISKGRMPDVFSFSI-LVNGY 381



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 150/361 (41%), Gaps = 53/361 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLF----------DVVVKR--VRKFSDP 48
           M+  GY P+V ++S ++  L   G     E +KL           DVV+    V +    
Sbjct: 187 MVARGYKPNVHSYSIIIKGLCRVGK--TTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKD 244

Query: 49  DIVSDSK------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
            +V+++             P    Y ++++   NLG+ K+   L ++M      PD++ +
Sbjct: 245 RLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAF 304

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-R 155
           +V+I +  +         +L+ + EMG+   + T+ +L+  Y    ++  A  + + M  
Sbjct: 305 SVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMIS 364

Query: 156 EGRR-DVCKIIRELDLEDYSSENEGDDDD---DDEVFEKLLPNSINPSSEPPLLPKT--- 208
           +GR  DV      + +  Y      D+     D+     L+P++++ ++    L +    
Sbjct: 365 KGRMPDVFSF--SILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRP 422

Query: 209 --------------FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
                         + PN   Y+ L+     +G +      +G  R  E++   PD VTY
Sbjct: 423 LEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQA---MGLFRAMENSGLKPDLVTY 479

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
             ++  + K G    AR++ AE++  G+  N       + G C+   +D+A +  R+M  
Sbjct: 480 NIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEK 539

Query: 315 D 315
           D
Sbjct: 540 D 540



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 20/199 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL+ FN M      P+ + +  L  A       K    +  +M     +  D+++  +L+
Sbjct: 75  ALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQM-EMAGISHDVLSLTILI 133

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE------- 453
             +CR+  V+    ++ ++ + G  PNV T+ +L NG  +  K G A+ L+         
Sbjct: 134 NCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYK 193

Query: 454 ---------IKERCEVKK--EGVNADSDLP-PPLKPDEELLDALADICVRAAFFRKALEI 501
                    IK  C V K  E +     +     +PD  + + + D   +     +A+ I
Sbjct: 194 PNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHI 253

Query: 502 VACMEEHGIPPNKTKYKKI 520
              M+  GI P    Y  +
Sbjct: 254 FCKMKGTGILPTVVTYTSL 272


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 218/460 (47%), Gaps = 45/460 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+   +ST+++ L    ++G V+     D++ + + K  +P + + + P TA 
Sbjct: 259 MVKEGCDPNSVTYSTLINGLC---NEGRVDEA--LDMLEEMIEKGIEPTVYTYTLPITAL 313

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
                     +   ++ ++L  +M + G +P+V TY  +I   +R  +  + + +  ++L
Sbjct: 314 --------CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 365

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC------KIIRELDLEDYS 174
           + G+     T+ +L+      G    A  I   M EG   +       +II+ L L    
Sbjct: 366 KEGLVPNTVTYNALINELCVGGRFSTALKIFHWM-EGHGSLANTQTYNEIIKGLCL---- 420

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               GD +    +FEK+L          PL      P    Y TL+ GY+ +G V++  R
Sbjct: 421 ---GGDIEKAMVLFEKMLKMG-------PL------PTVVTYNTLINGYLTKGNVNNAAR 464

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M+   +N   PD  TY  +VS   K G ++ A     EM   G+  N ++Y  L+ 
Sbjct: 465 LLDLMK---ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALID 521

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ +  ++D A  LL+ M ++    P+V SYN +I+G    +  + A    ++M  +G+ 
Sbjct: 522 GHSKDGKVDIALSLLKRM-EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLL 580

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  I+YTTL+     + + + A K+F +M    +   ++  ++ L+ G C+ G  +EA+ 
Sbjct: 581 PNVITYTTLIDGLCRNGRTQFAFKIFHDM-EKRKCLPNLYTYSSLIYGLCQEGKADEAEI 639

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++ M+  G  P+  T+ SL +G  +  +   A LL + +
Sbjct: 640 LLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 679



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 132/578 (22%), Positives = 234/578 (40%), Gaps = 136/578 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFS-DPDIVSDSK---- 55
           ML SG  P +  ++T+++ L+  G       V+  ++++ ++ ++   PD+ + +     
Sbjct: 189 MLNSGIQPSLLTFNTLINILSKKG------KVREAELILSQIFQYDLSPDVFTYTSLILG 242

Query: 56  -----------------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
                                  P++  Y+ ++N   N G+  + L + ++M E G +P 
Sbjct: 243 HCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 302

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           V TY + I        +   + ++ R+ + G    + T+ +L++     G LE+A  +  
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362

Query: 153 AM-REGR-----------RDVC---------KIIRELD----LEDYSSENE--------G 179
            M +EG             ++C         KI   ++    L +  + NE        G
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 422

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D +    +FEK+L          PL      P    Y TL+ GY+ +G V++  R+L  M
Sbjct: 423 DIEKAMVLFEKMLKMG-------PL------PTVVTYNTLINGYLTKGNVNNAARLLDLM 469

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +   +N   PD  TY  +VS   K G ++ A     EM   G+  N ++Y  L+ G+ + 
Sbjct: 470 K---ENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKD 526

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++D A  LL+ M ++    P+V SYN +I+G    +  + A    ++M  +G+ P  I+
Sbjct: 527 GKVDIALSLLKRM-EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVIT 585

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YTT                                    L++G CR G  + A +I   M
Sbjct: 586 YTT------------------------------------LIDGLCRNGRTQFAFKIFHDM 609

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           ++    PN+ TY SL  G+    K  EA +L KE++ +                 L PDE
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERK----------------GLAPDE 653

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
               +L D  V       A  ++  M + G  PN   Y
Sbjct: 654 VTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTY 691



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 184/432 (42%), Gaps = 64/432 (14%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V+  R      + S  +P    +N ++N  +  GK ++   +  Q+ ++   PDV TY 
Sbjct: 178 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 237

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I    R     L   V +R+++ G      T+ +L+                      
Sbjct: 238 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLING-------------------- 277

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT--------- 208
              +C              NEG  D+  ++ E+++   I P+     LP T         
Sbjct: 278 ---LC--------------NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320

Query: 209 -------------FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                          PN + YT L+ G    G++   + +   M ++      P+ VTY 
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKE---GLVPNTVTYN 377

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            +++ L   G    A ++   M   G  AN  TYN ++KG C    I+KA  L  +M   
Sbjct: 378 ALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM 437

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + P VV+YN LI+G++   +   A    + M+  G  P + +Y  L+  F+   + + 
Sbjct: 438 GPL-PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLES 496

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A+  F EM+ +  +  + V++  L++G+ + G V+ A  +++RM+E G  PNV +Y ++ 
Sbjct: 497 ASFYFQEMV-ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVI 555

Query: 436 NGISLARKPGEA 447
           NG+S   +  EA
Sbjct: 556 NGLSKENRFSEA 567



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 187/442 (42%), Gaps = 71/442 (16%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
            L+ QM   G +P +LT+N +I + ++  +      +L +I +  ++  + T+ SL+  +
Sbjct: 184 NLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGH 243

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
               +L++A  +   M +                     EG D                 
Sbjct: 244 CRNRNLDLAFGVFDRMVK---------------------EGCD----------------- 265

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                       PNS  Y+TL+ G  NEGRV + + ML  M    +    P   TYT  +
Sbjct: 266 ------------PNSVTYSTLINGLCNEGRVDEALDMLEEMI---EKGIEPTVYTYTLPI 310

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           +AL      + A +++A M + G   N  TY  L+ G  +  +++ A  L  +M  +  +
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            P+ V+YN LI+   +    + AL  F+ M   G      +Y  ++K   L    + A  
Sbjct: 371 -PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMV 429

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F++ML+   +   +V +N L+ GY   G V  A R+++ MKENG  P+  TY  L +G 
Sbjct: 430 LFEKMLKMGPLPT-VVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF 488

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
           S   K   A   ++E+ E C     G+N     P P+        AL D   +      A
Sbjct: 489 SKWGKLESASFYFQEMVE-C-----GLN-----PNPVS-----YTALIDGHSKDGKVDIA 532

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
           L ++  MEE G  PN   Y  +
Sbjct: 533 LSLLKRMEEMGCNPNVESYNAV 554



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 197/455 (43%), Gaps = 75/455 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V+ ++ ++S L+  G           +V +    K     +V    P+T  
Sbjct: 329 MKKRGCRPNVQTYTALISGLSRLGK---------LEVAIGLYHKMLKEGLV----PNTVT 375

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YNA++N     G+    L++F  M   G+  +  TYN +IK LC     +  +V + E++
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMV-LFEKM 434

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+MG    + T+ +L+  Y+  G++  A  ++  M+E   +  +      +  +S    G
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK--WG 492

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +     F++++   +N             PN   YT L+ G+  +G+V   + +L   
Sbjct: 493 KLESASFYFQEMVECGLN-------------PNPVSYTALIDGHSKDGKVDIALSLL--- 536

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +R E+   +P+  +Y  V++ L K      A ++  +M   G+  N ITY  L+ G C+ 
Sbjct: 537 KRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRN 596

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +   A ++  +M +  K  P++ +Y+ LI G      +  A     EM  +G+AP +++
Sbjct: 597 GRTQFAFKIFHDM-EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVT 655

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           +T+                                    L++G+  +G ++ A  ++ RM
Sbjct: 656 FTS------------------------------------LIDGFVVLGRIDHAFLLLRRM 679

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + G  PN  TY  L  G+       E LLL ++I
Sbjct: 680 VDMGCKPNYRTYSVLLKGLQ-----KECLLLEEKI 709



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 3/179 (1%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R+  PA+ I   +++K    + +I +  + L E++        + S N L+      +  
Sbjct: 122 RVFAPADHIRI-LMIKACRNEEEIRRVADFLNEISG-MGFGFSLYSCNTLLIQLAKFEMV 179

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
            GA   + +M   GI P+ +++ TL+   +   + + A  +  ++ +   +  D+  +  
Sbjct: 180 EGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYD-LSPDVFTYTS 238

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           L+ G+CR   ++ A  + +RM + G  PN  TY +L NG+    +  EAL + +E+ E+
Sbjct: 239 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 297


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 176/402 (43%), Gaps = 53/402 (13%)

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
            K DV ++ +MIK C           VL ++ EMG++  +  + +L+      GD+E  +
Sbjct: 160 VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGK 219

Query: 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
            +   M  G  DV        +        G   D  E++EK+    I            
Sbjct: 220 QLFYKM--GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGI------------ 265

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN   Y +++    N+G++++   +   MR +       + VTY T++  L +   + 
Sbjct: 266 -VPNVYTYNSMICRCCNDGKLNNAFELFDEMRER---GVACNVVTYNTLIGGLCQERRVL 321

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +++  M R G+  N I+YN L+ GYC    +DKA  L  +M    +  P + +YNIL
Sbjct: 322 EAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQ-SPSLATYNIL 380

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM----- 383
           I GF    +SAG      EM ARG++P+K++YT LM A   S   + A +++  M     
Sbjct: 381 IAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL 440

Query: 384 -----------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                                        L +  +K + V +N ++ GYC+ G    A R
Sbjct: 441 VADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALR 500

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           +++ M ENG  PNVA+Y S    +    K  EA +L K++ E
Sbjct: 501 LLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIE 542



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 21/295 (7%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  ++KG    G +     +LG M   E+    P+ V YTT++    K G ++R +Q+  
Sbjct: 167 FGIMIKGCCEVGYLDKGFEVLGQM---EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFY 223

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M  + V AN+ TY +L+ G+ +        EL  +M     I P+V +YN +I      
Sbjct: 224 KMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTG-IVPNVYTYNSMICRCCND 282

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A   F+EMR RG+A   ++Y TL+       +   A ++   M RD  +  ++++
Sbjct: 283 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDG-LSPNLIS 341

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N L++GYC +G +++A  +  +MK +G  P++ATY  L  G S A+       + +E++
Sbjct: 342 YNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREME 401

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            R                 L P +     L D  VR+    KA +I + ME+ G+
Sbjct: 402 AR----------------GLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL 440



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 177/408 (43%), Gaps = 59/408 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V  ++T++     +GD   +E  K      +   K  + D+V++       Y  +
Sbjct: 194 GLSPNVVVYTTLIDGCCKNGD---IERGK------QLFYKMGELDVVANQ----YTYTVL 240

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N    +G  K  ++L+++M   G  P+V TYN MI  C    + +    + + + E G+
Sbjct: 241 INGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGV 300

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMR--EGRRDVCKIIRELDLEDYSSENE---- 178
              + T+ +L+              + Q  R  E  R +C++ R+    +  S N     
Sbjct: 301 ACNVVTYNTLIGG------------LCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDG 348

Query: 179 ----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM---NEGRVSD 231
               G+ D    +F     N +  S + P L          Y  L+ G+    N   V+D
Sbjct: 349 YCSIGNLDKASSLF-----NQMKSSGQSPSLAT--------YNILIAGFSEAKNSAGVTD 395

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V      R  E     P  VTYT ++ ALV++ ++++A Q+ + M + G+ A+   Y +
Sbjct: 396 MV------REMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGV 449

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G C    + +A +L + + D+  ++P+ V YN +I G+     S  AL    EM   
Sbjct: 450 LIHGLCVVGDMKEASKLFKSL-DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGEN 508

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
           G+ P   SY + ++      +   A  +  +M+ +  +K  I  WNM+
Sbjct: 509 GMVPNVASYNSTIQILCKDEKWTEAEVLLKDMI-ELGLKPSISIWNMI 555



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 133/304 (43%), Gaps = 54/304 (17%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P   T+  ++  L+K+   ++A +V  E T+  V  +  ++ I++KG C+   +DK  E+
Sbjct: 128 PGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEV 186

Query: 309 LREMADDAKIEPDVV-----------------------------------SYNILIDGFI 333
           L +M ++  + P+VV                                   +Y +LI+GF 
Sbjct: 187 LGQM-EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFF 245

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            +      +  + +M+  GI P   +Y +++       +   A ++FDEM R+  V  ++
Sbjct: 246 KMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEM-RERGVACNV 304

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L+ G C+   V EA+R++ RMK +G  PN+ +Y +L +G        +A  L+ +
Sbjct: 305 VTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 364

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +K             S   P L     L+   ++    A       ++V  ME  G+ P+
Sbjct: 365 MK------------SSGQSPSLATYNILIAGFSEAKNSAG----VTDMVREMEARGLSPS 408

Query: 514 KTKY 517
           K  Y
Sbjct: 409 KVTY 412



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 21/199 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL +FN+M  RG+ P   ++  L+     S+  + A +VF+E      VK+D+ ++ +++
Sbjct: 114 ALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE--TKGNVKLDVYSFGIMI 171

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI----------SLARKPGEALLL 450
           +G C +G +++   ++ +M+E G  PNV  Y +L +G            L  K GE  ++
Sbjct: 172 KGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVV 231

Query: 451 WKEIKE--------RCEVKKEGVNADSDLP-PPLKPDEELLDALADICVRAAFFRKALEI 501
             +           +  +KK+G+     +    + P+    +++   C        A E+
Sbjct: 232 ANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFEL 291

Query: 502 VACMEEHGIPPNKTKYKKI 520
              M E G+  N   Y  +
Sbjct: 292 FDEMRERGVACNVVTYNTL 310



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 18/239 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +YN +++   ++G   K   LF+QM   G  P + TYN++I   + A     +  +
Sbjct: 337 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 396

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  +   G++    T+  L+ A V   ++E A  I  +M +        I  + +     
Sbjct: 397 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 456

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              GD  +  ++F+ L         E  L      PN  IY T++ GY  EG     +R+
Sbjct: 457 --VGDMKEASKLFKSL--------DEMHL-----KPNDVIYNTMIYGYCKEGSSYRALRL 501

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           L  M    +N   P+  +Y + +  L K      A  +L +M  +G+  +   +N++ K
Sbjct: 502 LKEMG---ENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISK 557


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/477 (23%), Positives = 221/477 (46%), Gaps = 44/477 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PD    N ++N   ++G+      +  ++ + G  PD +T N +IK LC +   K  L 
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  +++L  G  L   ++ +L+      GD   A  ++Q + +GR     ++    + D 
Sbjct: 151 F-HDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKI-DGRLTKPNVVMYSTIIDA 208

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             + +            L+  +    SE  +  K  + +   Y+TL+ G+  EG++ + +
Sbjct: 209 LCKYQ------------LVSEAYGLFSE--MTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M  +  N   P+  TY  +V AL K G +  A+ VLA M +  V  + ITY+ L+
Sbjct: 255 GLLNEMVLKTIN---PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLM 311

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRA 350
            GY    ++ KA+ +   M+    + PDV +Y ILI+GF    ++D+   AL  F EM  
Sbjct: 312 DGYFLVYEVKKAQHVFNAMS-LMGVTPDVHTYTILINGFCKNKMVDE---ALNLFKEMHQ 367

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + + P  ++Y++L+     S +      + DEM  D     +++ ++ L++G C+ G ++
Sbjct: 368 KNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM-HDRGQPANVITYSSLIDGLCKNGHLD 426

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            A  +  +MK+ G  PN  T+  L +G+    +  +A    +E+ +    K   +N  + 
Sbjct: 427 RAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDA----QEVFQDLLTKGYHLNVYT- 481

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
                       + + D   +     +AL +++ ME++G  P+   ++ I + +  +
Sbjct: 482 -----------YNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKK 527



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 189/437 (43%), Gaps = 80/437 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L  G+  +  ++ T+++ +   GD     ++KL   +  R+           +KP+   
Sbjct: 155 LLAQGFQLNQVSYGTLINGVCKIGD--TRAAIKLLQKIDGRL-----------TKPNVVM 201

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+ +++A        +   LF +M   G   DV+TY+ +I   C     K  +  + E +
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+  I   + T+  LV A    G ++ A++++  M        K   + D+  YS+  +G
Sbjct: 262 LKT-INPNVYTYNILVDALCKEGKVKEAKSVLAVM-------LKACVKPDVITYSTLMDG 313

Query: 180 -----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                +      VF  +            L+  T  P+   YT L+ G+     V + + 
Sbjct: 314 YFLVYEVKKAQHVFNAM-----------SLMGVT--PDVHTYTILINGFCKNKMVDEALN 360

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M ++      P  VTY++++  L K+G +     ++ EM   G PAN ITY+ L+ 
Sbjct: 361 LFKEMHQKN---MVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLID 417

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+   +D+A  L  +M D   I P+  ++ IL+DG        G L            
Sbjct: 418 GLCKNGHLDRAIALFNKMKDQG-IRPNTFTFTILLDGLC----KGGRL------------ 460

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                              K A +VF ++L      +++  +N++++G+C+ GL+EEA  
Sbjct: 461 -------------------KDAQEVFQDLLTKG-YHLNVYTYNVMIDGHCKQGLLEEALT 500

Query: 415 IIERMKENGFYPNVATY 431
           ++ +M++NG  P+  T+
Sbjct: 501 MLSKMEDNGCIPDAVTF 517



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 207  KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
            K   P+      L+  + + G+++    +L  + ++     HPD +T+TT+++ L   G 
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKR---GYHPDTITFTTLINGLCLKGQ 1011

Query: 267  MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            +++A     ++   G   N+++Y  L+ G C+      A +LLR++ D    +PDVV YN
Sbjct: 1012 VNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKI-DGRLTKPDVVMYN 1070

Query: 327  ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
             +ID        + A   F EM  +GI+   ++Y TL+  F +  + K A  + ++M+  
Sbjct: 1071 TIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLK 1130

Query: 387  PRVKVDIVAWNMLVEGYCRMG--LVEEAKRIIERMKENGFYPNVATY 431
              +  ++  +N+LV+  C+ G  L++E+  ++ +M++NG   N  T+
Sbjct: 1131 T-INPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTF 1176



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 115/278 (41%), Gaps = 18/278 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R E     PD +T   +++     G +     VLA++ + G P + +T N L+KG C +
Sbjct: 83  HRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLK 142

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+ KA     ++      + + VSY  LI+G   I D+  A+    ++  R   P  + 
Sbjct: 143 GQVKKALHFHDKLLAQG-FQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVM 201

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+T++ A         A  +F EM     +  D+V ++ L+ G+C  G ++EA  ++  M
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKG-ISADVVTYSTLIYGFCIEGKLKEAIGLLNEM 260

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
                 PNV TY  L + +    K  EA  +   + + C                +KPD 
Sbjct: 261 VLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC----------------VKPDV 304

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                L D        +KA  +   M   G+ P+   Y
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTY 342



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 5/210 (2%)

Query: 240  RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             R E     PD  T   +++     G +     +LA++ + G   + IT+  L+ G C +
Sbjct: 950  HRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLK 1009

Query: 300  LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             Q++KA     ++      + + VSY  LI+G   I D+  A+    ++  R   P  + 
Sbjct: 1010 GQVNKALHFHDKLLAQG-FQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVM 1068

Query: 360  YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
            Y T++ A         A  +F EM     +  D+V +N L+ G+C +G ++EA  ++ +M
Sbjct: 1069 YNTIIDALCKHQLVSKAYGLFFEM-NVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKM 1127

Query: 420  KENGFYPNVATYGSLANGISLARKPGEALL 449
                  PNV TY  L + +    K G+ LL
Sbjct: 1128 VLKTINPNVRTYNILVDALC---KEGKDLL 1154



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 122/293 (41%), Gaps = 27/293 (9%)

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           VS   RML  MR        P  + +  ++ +  K      A  +   +   G+  + IT
Sbjct: 44  VSQFNRML-CMRHT------PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
            NIL+  +C   QI     +L ++       PD V+ N LI G  L      AL F +++
Sbjct: 97  LNILINCFCHMGQITFGFSVLAKILKRG-YPPDTVTLNTLIKGLCLKGQVKKALHFHDKL 155

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV-KVDIVAWNMLVEGYCRMG 407
            A+G    ++SY TL+         + A K+  ++  D R+ K ++V ++ +++  C+  
Sbjct: 156 LAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKI--DGRLTKPNVVMYSTIIDALCKYQ 213

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
           LV EA  +   M   G   +V TY +L  G  +  K  EA+ L  E+             
Sbjct: 214 LVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEM------------- 260

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +   + P+    + L D   +    ++A  ++A M +  + P+   Y  +
Sbjct: 261 ---VLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 133/296 (44%), Gaps = 33/296 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF- 114
           P+   YN +++A    GK K+   +   M +   KPDV+TY+ ++         + LV+ 
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD-------GYFLVYE 319

Query: 115 ------VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 V   +  MG+T  + T+  L+  +     ++ A  + + M + +  V  I+   
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQ-KNMVPGIVT-- 376

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
               YSS  +G        +   L + ++   +P         N   Y++L+ G    G 
Sbjct: 377 ----YSSLIDGLCKSGRIPYVWDLIDEMHDRGQPA--------NVITYSSLIDGLCKNGH 424

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +   + +   M+   D    P+  T+T ++  L K G +  A++V  ++   G   N  T
Sbjct: 425 LDRAIALFNKMK---DQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYT 481

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           YN+++ G+C+Q  +++A  +L +M D+  I PD V++ I+I      D++ G + F
Sbjct: 482 YNVMIDGHCKQGLLEEALTMLSKMEDNGCI-PDAVTFEIIIIALFKKDENGGNVGF 536



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 204  LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
            LL + F  N   Y TL+ G     ++ DT   +  +R+ +   + PD V Y T++ AL K
Sbjct: 1022 LLAQGFQLNQVSYGTLINGVC---KIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCK 1078

Query: 264  AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
               + +A  +  EM   G+ A+ +TYN L+ G+C   ++ +A  LL +M     I P+V 
Sbjct: 1079 HQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKT-INPNVR 1137

Query: 324  SYNILIDGFI-----LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            +YNIL+D        L+D+S   L+  ++M   G     +++  ++ A     +     K
Sbjct: 1138 TYNILVDALCKEGKDLLDES---LSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEK 1194

Query: 379  VFDEML 384
            +  EM+
Sbjct: 1195 LLHEMI 1200



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 74/287 (25%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            +L+ GY P    ++T+++ L   G              V +   F D  +    + +  +
Sbjct: 987  ILKRGYHPDTITFTTLINGLCLKGQ-------------VNKALHFHDKLLAQGFQLNQVS 1033

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCAR--ASRKHLLVFVLE 117
            Y  ++N    +G  +  ++L  ++     KPDV+ YN +I  LC     S+ + L F + 
Sbjct: 1034 YGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMN 1093

Query: 118  RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
                 GI+  + T+ +L+  +   G L+ A  ++  M                       
Sbjct: 1094 V---KGISADVVTYNTLIYGFCIVGKLKEAIGLLNKM----------------------- 1127

Query: 178  EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR--VSDTVRM 235
                                       + KT  PN R Y  L+     EG+  + +++ M
Sbjct: 1128 ---------------------------VLKTINPNVRTYNILVDALCKEGKDLLDESLSM 1160

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
            L  M   EDN    + VT+  ++SAL +    D+  ++L EM   G+
Sbjct: 1161 LSKM---EDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 17/180 (9%)

Query: 341  ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
            A++  + +  +GI P   +   L+  F    Q      +  ++L+      D + +  L+
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRG-YHPDTITFTTLI 1003

Query: 401  EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             G C  G V +A    +++   GF  N  +YG+L NG+        A+ L ++I  R   
Sbjct: 1004 NGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLT- 1062

Query: 461  KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                           KPD  + + + D   +     KA  +   M   GI  +   Y  +
Sbjct: 1063 ---------------KPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTL 1107


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 182/381 (47%), Gaps = 35/381 (9%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARAS--RKHLLVFVL 116
            +N  +N     GK  K     + M  +G  P+V+TYN ++   C R S  + +     +
Sbjct: 202 TFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFM 261

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSS 175
           + +L   I     TF +L+  +    ++  A+   + M ++G +         ++  Y+S
Sbjct: 262 KEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKP--------NIVTYNS 313

Query: 176 E-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                 N G  ++  ++++K++   +              PN   Y  L+ G+  +  + 
Sbjct: 314 LINGLCNNGKLEEAIDLWDKMVGLGL-------------KPNIVTYNALINGFCKKKMMK 360

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  ++   + +QE     P+ +T+ T++ A  K G M+    + + M   G+  N  TYN
Sbjct: 361 EATKVFDDVSKQE---LVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYN 417

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ G C++  +  AKELL EM ++  ++ DVV+YNILIDG    D S  A    NEM  
Sbjct: 418 CLIAGLCRKQDLQAAKELLNEM-ENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFN 476

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G+ P  ++Y TLM  + +  + K A  V   M ++ R + ++V +N+L++GYC++  +E
Sbjct: 477 LGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKE-RKQPNVVTYNVLIKGYCKINKLE 535

Query: 411 EAKRIIERMKENGFYPNVATY 431
            A  ++  M E G  PN  TY
Sbjct: 536 AANGLLNEMLEKGLNPNRTTY 556



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/450 (20%), Positives = 195/450 (43%), Gaps = 33/450 (7%)

Query: 81  FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140
           F +  ++G K  + + N ++    + ++   + +V + +++  I   + TF   +     
Sbjct: 153 FTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCR 212

Query: 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS 200
            G L  AE  ++ M+        +     ++ Y            E F K          
Sbjct: 213 AGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMK---------- 262

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
              +L     PN   + TL+ G+  +  V+   +    M++Q      P+ VTY ++++ 
Sbjct: 263 --EMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQ---GLKPNIVTYNSLING 317

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L   G ++ A  +  +M  +G+  N +TYN L+ G+C++  + +A ++  +++   ++ P
Sbjct: 318 LCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ-ELVP 376

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           +V+++N +ID +          +  + M   GI P   +Y  L+         + A ++ 
Sbjct: 377 NVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELL 436

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +EM  +  +K D+V +N+L++G C+      A++++  M   G  PN  TY +L +G  +
Sbjct: 437 NEM-ENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCM 495

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             K   AL     ++ R E +++            +P+    + L     +      A  
Sbjct: 496 EGKLKAAL----NVRTRMEKERK------------QPNVVTYNVLIKGYCKINKLEAANG 539

Query: 501 IVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
           ++  M E G+ PN+T Y  + +EM  + F+
Sbjct: 540 LLNEMLEKGLNPNRTTYDIVRLEMLEKGFS 569



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 23/284 (8%)

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           A  R +D        +   ++SALVK   +     V  EM +  +  N  T+NI + G C
Sbjct: 152 AFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLC 211

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL----TFFNEMRARGI 353
           +  +++KA++ + +M     I P+VV+YN L+DG+     SAG +     F  EM A  I
Sbjct: 212 RAGKLNKAEDAIEDMKAWG-ISPNVVTYNTLVDGYC-KRGSAGKMYKAEAFMKEMLANKI 269

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P ++++ TL+  F        A K F+EM +   +K +IV +N L+ G C  G +EEA 
Sbjct: 270 CPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQG-LKPNIVTYNSLINGLCNNGKLEEAI 328

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            + ++M   G  PN+ TY +L NG    +   EA  ++ ++ ++                
Sbjct: 329 DLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ---------------- 372

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            L P+    + + D   +     +   + + M + GI PN + Y
Sbjct: 373 ELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTY 416



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 165/367 (44%), Gaps = 60/367 (16%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+   + E ++ D   +   M ++     H +  T+   ++ L +AG +++A   + +M 
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRR---IHTNLNTFNIFINGLCRAGKLNKAEDAIEDMK 227

Query: 279 RIGVPANRITYNILLKGYCQQ---LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
             G+  N +TYN L+ GYC++    ++ KA+  ++EM  + KI P+ V++N LIDGF   
Sbjct: 228 AWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLAN-KICPNEVTFNTLIDGFCKD 286

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLM-----------------KAFALSSQPKL--- 375
           ++ A A   F EM+ +G+ P  ++Y +L+                 K   L  +P +   
Sbjct: 287 ENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTY 346

Query: 376 ---------------ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
                          A KVFD++ +   V  +++ +N +++ YC+ G++EE   +   M 
Sbjct: 347 NALINGFCKKKMMKEATKVFDDVSKQELVP-NVITFNTMIDAYCKEGMMEEGFSLCSSML 405

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  PNV+TY  L  G  L RK  + L   KE+    E K             LK D  
Sbjct: 406 DEGILPNVSTYNCLIAG--LCRK--QDLQAAKELLNEMENK------------GLKGDVV 449

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
             + L D   +    R A +++  M   G+ PN   Y  + ++ +      K A   R  
Sbjct: 450 TYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTL-MDGYCMEGKLKAALNVRTR 508

Query: 541 RRRERKR 547
             +ERK+
Sbjct: 509 MEKERKQ 515



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 27/260 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP+   YN+++N   N GK ++ + L+D+M   G KP+++TYN +I   C +   K    
Sbjct: 305 KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKE-AT 363

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EG--------------- 157
            V + + +  +   + TF +++ AY   G +E   ++  +M  EG               
Sbjct: 364 KVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGL 423

Query: 158 -RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF----APN 212
            R+   +  +EL  E  +   +GD    + + + L  N  + ++E  LL + F     PN
Sbjct: 424 CRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAE-KLLNEMFNLGLKPN 482

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y TLM GY  EG++      L    R E     P+ VTY  ++    K   ++ A  
Sbjct: 483 HVTYNTLMDGYCMEGKLKAA---LNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANG 539

Query: 273 VLAEMTRIGVPANRITYNIL 292
           +L EM   G+  NR TY+I+
Sbjct: 540 LLNEMLEKGLNPNRTTYDIV 559


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 212/491 (43%), Gaps = 65/491 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP +K  + V+ RL    D     + ++++V+V+              +P    
Sbjct: 145 MVSKGMLPDLKNCNRVL-RLLRDRDSSIDVAREVYNVMVE-----------CGIRPTVVT 192

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L++    GK ++ LQL  QM + G  P+ +TYNV++   + +        +++ +L
Sbjct: 193 YNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEML 252

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            +G+ +   T+  L+  Y   G L+ A  + + M    R     +   +   Y     G 
Sbjct: 253 RLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLS--RGAVPTLVTYNTIMYGLCKWGR 310

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D      KLL   +N +  P L+          Y TL+ GY   G + +   +   +R
Sbjct: 311 VSDA----RKLLDVMVNKNLMPDLVS---------YNTLIYGYTRLGNIGEAFLLFAELR 357

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P  VTY T++  L + G +D A ++  EM + G   +  T+ IL++G+C+  
Sbjct: 358 FR---GLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLG 414

Query: 301 QIDKAKELLREM----------------------ADDAK------------IEPDVVSYN 326
            +  AKEL  EM                       D +K              PD+++YN
Sbjct: 415 NLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYN 474

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           + IDG   + +   A     +M   G+ P  ++YT+++ A  ++   + A  VF EML  
Sbjct: 475 VFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEML-S 533

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +   +V + +L+  Y   G ++ A      M E G +PNV TY +L NG+   RK  +
Sbjct: 534 KGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQ 593

Query: 447 ALLLWKEIKER 457
           A   + E++ +
Sbjct: 594 AYKFFTEMQAK 604



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 178/390 (45%), Gaps = 44/390 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G +P +  ++T++  L   G     ++ KL DV+V +           +  PD  +
Sbjct: 286 MLSRGAVPTLVTYNTIMYGLCKWGRVS--DARKLLDVMVNK-----------NLMPDLVS 332

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++     LG   +   LF ++   G  P V+TYN +I    R     + + + + ++
Sbjct: 333 YNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMI 392

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRD----VCKIIRELDLEDYS 174
           + G    + TF  LV  +   G+L +A+ +   M  R  + D    + +I+ EL L D  
Sbjct: 393 KHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGD-P 451

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S+  G  ++                    +L + F P+   Y   + G    G + +   
Sbjct: 452 SKAFGMQEE--------------------MLARGFPPDLITYNVFIDGLHKLGNLKEASE 491

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M     N   PDHVTYT+++ A + AG + +AR V  EM   G+  + +TY +L+ 
Sbjct: 492 LVKKMLY---NGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIH 548

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            Y  + ++  A     EM +   + P+V++YN LI+G   +     A  FF EM+A+GI+
Sbjct: 549 SYAVRGRLKLAILHFFEMHEKG-VHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGIS 607

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEML 384
           P K +YT L+         + A +++ +ML
Sbjct: 608 PNKYTYTILINENCNLGHWQEALRLYKDML 637


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/499 (24%), Positives = 212/499 (42%), Gaps = 82/499 (16%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D    N VLNA  + G   K L L   +  FG +PDV++YN ++K    A R   +  ++
Sbjct: 191 DVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELM 250

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E ++ M     + TF +L++     G  E    ++  M E                    
Sbjct: 251 EEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAE-------------------- 290

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                             P+ R+Y T++ G   EG +     +L
Sbjct: 291 ------------------------------HGCTPDIRMYATIIDGICKEGHLKVAHEIL 320

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
               R       P+ V Y T++  L  A   +   ++LAEM     P + +T+NIL+  +
Sbjct: 321 ---NRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFF 377

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGI 353
           CQ   +D+  ELL +M     + PDV++Y  +I+GF    LID+   A+     M A G 
Sbjct: 378 CQNGLVDRVIELLEQMLVHGCM-PDVITYTTVINGFCKEGLIDE---AVMLLKSMTACGC 433

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ISYT ++K    + +   A  +  +M++     ++ + +N L+   C+ GLVE+A 
Sbjct: 434 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQ-GCPLNPITFNTLINFLCKKGLVEQAI 492

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEV 460
            ++++M  NG  P++ +Y ++ +G+  A K  EAL L   +  +               +
Sbjct: 493 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 552

Query: 461 KKEG-VNA-----DSDLPPPLKPDEELLDA-LADICVRAAFFRKALEIVACMEEHGIPPN 513
            +EG +N      D+     ++ D  L +A ++ +C R    R A+E +A M   G  PN
Sbjct: 553 SREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETER-AIEFLAYMVSSGCVPN 611

Query: 514 KTKYKKIYVEMHSRMFTSK 532
           ++ Y  +   + S  F  +
Sbjct: 612 ESTYTILIRGLASEGFVKE 630



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 185/406 (45%), Gaps = 25/406 (6%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +PD  +YNAVL       +     +L ++M      P+++T+N +I    R      + 
Sbjct: 223 CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVH 282

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDV 161
            VL ++ E G T  +  + +++      G L++A  I+  M                + +
Sbjct: 283 EVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGL 342

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C   R  + E+  +E    D   D+V   +L +    +            +L     P+ 
Sbjct: 343 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDV 402

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT++ G+  EG + + V +L +M         P+ ++YT V+  L  A     A  +
Sbjct: 403 ITYTTVINGFCKEGLIDEAVMLLKSMTA---CGCKPNTISYTIVLKGLCSAERWVDAEDL 459

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           +++M + G P N IT+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG  
Sbjct: 460 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLG 518

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  AL   N M  +G++P  I Y+++  A +   +     ++FD  ++D  ++ D 
Sbjct: 519 KAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN-IQDTTIRSDA 577

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           V +N ++   C+ G  E A   +  M  +G  PN +TY  L  G++
Sbjct: 578 VLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 623



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 133/310 (42%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y  +++     GR++D + +L  M R+      P    Y  ++ A  + G    A
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRR---GCAPIPPMYHVILEAACRGGGFRSA 176

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL ++   G   +    N++L   C Q  +DKA  LLR++      EPDVVSYN ++ 
Sbjct: 177 VRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFG-CEPDVVSYNAVLK 235

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G  +            EM      P  +++ TL+     +   +  ++V  +M  +    
Sbjct: 236 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM-AEHGCT 294

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DI  +  +++G C+ G ++ A  I+ RM   G  PNV  Y +L  G+  A +       
Sbjct: 295 PDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAER------- 347

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           W+E +   E+  E  + D  L      D+   + L D   +     + +E++  M  HG 
Sbjct: 348 WEETE---ELLAEMFDKDCPL------DDVTFNILVDFFCQNGLVDRVIELLEQMLVHGC 398

Query: 511 PPNKTKYKKI 520
            P+   Y  +
Sbjct: 399 MPDVITYTTV 408



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 24/291 (8%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V RV +  +  +V    PD   Y  V+N     G   + + L   M   G KP+ ++Y 
Sbjct: 382 LVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYT 441

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMRE 156
           +++K    A R      ++ ++++ G  L   TF +L+      G +E A E + Q +  
Sbjct: 442 IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN 501

Query: 157 GRRDVCKIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
           G           DL  YS+  +  G     DE  E LL   +N         K  +PN+ 
Sbjct: 502 GCSP--------DLISYSTVIDGLGKAGKTDEALE-LLNVMVN---------KGMSPNTI 543

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           IY+++      EGR++  ++M   +   +D     D V Y  V+S+L K G  +RA + L
Sbjct: 544 IYSSIASALSREGRINKVIQMFDNI---QDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           A M   G   N  TY IL++G   +  + +A+E+L E+     +   ++ +
Sbjct: 601 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALRKHLMKH 651



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 21/232 (9%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN ++ GYC+  Q++ A    R +A    + P+  +Y  ++         A AL   +EM
Sbjct: 93  YNAMVAGYCRAGQLESA----RRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RG AP    Y  +++A       + A +V ++ L      +D+   N+++   C  G 
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLED-LHARGCALDVGNCNLVLNAICDQGS 207

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           V++A  ++  +   G  P+V +Y ++  G+ +A++       W  ++   E+ +E V   
Sbjct: 208 VDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKR-------WGCVQ---ELMEEMVRMA 257

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              PP +     L+  L     R   F +  E++A M EHG  P+   Y  I
Sbjct: 258 C--PPNIVTFNTLISYLC----RNGLFERVHEVLAQMAEHGCTPDIRMYATI 303


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 196/431 (45%), Gaps = 34/431 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD + +N++L+A    G  +   +LF  M E   KPD++TY +++    +A      + V
Sbjct: 129 PDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDALKV 188

Query: 116 LERILEMGITLC--MTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLED 172
           L+R+   G  +C  +    ++V      G L+ A   V + MR+        +    L D
Sbjct: 189 LDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLAD 248

Query: 173 YSSENEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT------------------- 208
                 GD D   ++ E++      PN I  ++    L +                    
Sbjct: 249 ACCR-VGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLE 307

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              N+  Y+TL+  +++   V+  + +   M    D    PD V Y T++S L +AG + 
Sbjct: 308 ARGNAVTYSTLVSAFLHCNNVALAMELFHEM---ADQGYPPDAVMYFTMISGLTQAGRLV 364

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  + A M + G   +R  YNIL+ G+C++ ++ +A +L  EM   A ++PDV +YN L
Sbjct: 365 DACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEM-KGAGLQPDVYTYNTL 423

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +       D +        M   G  P+ +++ TL+  +  + +   A K+F  M  + R
Sbjct: 424 LSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSM-GEAR 482

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           ++ + V +N L++  C+   V+ A ++ + M+EN    NV TY +L  G+     P +A 
Sbjct: 483 IQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAF 542

Query: 449 LLWKEIK-ERC 458
            L  ++K ERC
Sbjct: 543 ELMDQMKEERC 553



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 148/342 (43%), Gaps = 54/342 (15%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           I  T++ G    GR+ D +  +    RQ    + P+ VTY  +  A  + G +D A Q++
Sbjct: 205 ILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCA-PNTVTYNCLADACCRVGDIDMACQIV 263

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD-AKIEPDVVSYNILIDGFI 333
             M + GV  N IT N ++ G C+  ++  A +  RE      +   + V+Y+ L+  F+
Sbjct: 264 ERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTLVSAFL 323

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
             ++ A A+  F+EM  +G  P  + Y T++     + +   A  +   M +    K+D 
Sbjct: 324 HCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASM-KKAGFKLDR 382

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMK--------------------------------- 420
            A+N+L+ G+CR   + EA ++ E MK                                 
Sbjct: 383 KAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGN 442

Query: 421 --ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
             ++G  P+V T+G+L +G   A K  EAL +++ + E                  ++P+
Sbjct: 443 MIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGE----------------ARIQPN 486

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             + + L D   ++     A+++   M E+ +P N T Y  +
Sbjct: 487 TVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNAL 528



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 39/212 (18%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
            A  PD  T+ +++SAL +AG++    ++   M    V  + +TY ILL   C+   +  
Sbjct: 125 GAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGD 184

Query: 305 AKELLREMAD-DAKIEPDVVSYNILIDGFILIDDSAGALTFFNE-MR-ARGIAPTKISYT 361
           A ++L  M+   + +  D+V  N ++DG   I     A+ F +E MR   G AP  ++Y 
Sbjct: 185 ALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTY- 243

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
                                              N L +  CR+G ++ A +I+ERM++
Sbjct: 244 -----------------------------------NCLADACCRVGDIDMACQIVERMEK 268

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKE 453
            G  PNV T  ++  G+    + G AL  ++E
Sbjct: 269 EGVTPNVITMNTIVGGLCRVGRVGAALDFFRE 300



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 151/359 (42%), Gaps = 40/359 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V   +T+V  L   G  G   ++  F    KR           +++ +   
Sbjct: 266 MEKEGVTPNVITMNTIVGGLCRVGRVG--AALDFFRE--KRTTWL-------EARGNAVT 314

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++A  +       ++LF +M + G  PD + Y  MI    +A R      +   + 
Sbjct: 315 YSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMK 374

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
           + G  L    +  L+  +     L  A  + + M+           + D+  Y++     
Sbjct: 375 KAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAG-------LQPDVYTYNTLLSCL 427

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              GD    DE    LL N I+   +P ++          + TL+ GY   G+  + +++
Sbjct: 428 CKAGDFSAVDE----LLGNMIDDGCQPSVV---------TFGTLVHGYCKAGKTDEALKI 474

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R   +    P+ V Y T++  L K+  +D A ++  EM    VPAN  TYN LLKG
Sbjct: 475 F---RSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKG 531

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
              +   +KA EL+ +M ++ +  PD V+ ++L++    I ++     F  +   +G A
Sbjct: 532 LQDKNMPEKAFELMDQMKEE-RCTPDYVTMDVLMEWLPEIGETERLKCFMEQRDEKGGA 589



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A   LR+        PDV ++N L+       +  G    F  MR   + P  ++Y  L+
Sbjct: 114 AASFLRDSLAAGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILL 173

Query: 365 KAFALSSQPKLANKVFDEMLR-DPRVKVDIVAWNMLVEGYCRMGLVEEAKRII-ERMKE- 421
                +     A KV D M      V  DIV  N +V+G C++G +++A   + ERM++ 
Sbjct: 174 NRLCKAGLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQV 233

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           +G  PN  TY  LA+      + G+ + +  +I ER E  KEGV  +
Sbjct: 234 HGCAPNTVTYNCLADACC---RVGD-IDMACQIVERME--KEGVTPN 274


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/564 (22%), Positives = 237/564 (42%), Gaps = 85/564 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P+    +T++  L   G+             +K+   F D  +    + +  +
Sbjct: 124 ILKRGYHPNAITLNTLIKGLCFRGE-------------IKKALYFHDQVVAQGFQLNQVS 170

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++N     G+ K   +L  ++     KPDV+ YN +I  LC             E I
Sbjct: 171 YRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMI 230

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSEN 177
           ++ GI+  + T+ +LV  +   G L+ A +++  M  +    DVC     +D    +   
Sbjct: 231 VK-GISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLID----ALGK 285

Query: 178 EGDDDDDDEVFEKLLPNSINPS--SEPPLLPKTF--------------------APNSRI 215
           EG       V   ++   I P   +   L+   F                     PN R 
Sbjct: 286 EGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRT 345

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           YTT++ G   E  V + + +   M+ +      PD VTYT+++  L K   ++RA  +  
Sbjct: 346 YTTMIDGLCKEKMVDEAMSLFEEMKYKN---MIPDIVTYTSLIDGLCKNHHLERAIALCK 402

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M   G+  +  +Y ILL   C+  +++ AKE  + +        +V +YN++I+G    
Sbjct: 403 KMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKG-YHLNVQTYNVMINGLCKA 461

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM----LRDPR--- 388
           D    A+   ++M  +G  P  I++ T++ A     +   A K+  EM    L++ R   
Sbjct: 462 DLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVR 521

Query: 389 ---------------VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
                          +K D+V +  L++GY  +  ++ AK +   M + G  PNV  Y  
Sbjct: 522 LKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTI 581

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           + +G+   +   EA+ L++E+K +            ++ P +     L+DAL     +  
Sbjct: 582 MIDGLCKKKTVDEAMSLFEEMKHK------------NMFPNIVTYTSLIDALC----KNH 625

Query: 494 FFRKALEIVACMEEHGIPPNKTKY 517
              +A+ ++  M+EHGI P+   Y
Sbjct: 626 HLERAIALLKEMKEHGIQPDVYSY 649



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 192/418 (45%), Gaps = 35/418 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L++  N       + LF +    GA PD+ T N+++      +       V
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREGR-------RDVCK 163
           L  IL+ G      T  +L+      G+++ A     + + Q  +  +         +CK
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCK 180

Query: 164 IIRELDLEDYSSENEGDDDDDDEVF----------EKLLPNSINPSSEPPLLPKTFAPNS 213
                 +     + EG     D V            KLL ++ +  SE  ++ K  +PN 
Sbjct: 181 TGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSE--MIVKGISPNV 238

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  L+ G+   G + +   +L  M+ +  N   PD  T+ T++ AL K G M  A+ V
Sbjct: 239 VTYNALVYGFCIMGHLKEAFSLLNEMKLKNIN---PDVCTFNTLIDALGKEGKMKAAKIV 295

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA M +  +  + +TYN L+ GY    ++  AK +   MA    + P+V +Y  +IDG  
Sbjct: 296 LAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSG-VTPNVRTYTTMIDGLC 354

Query: 334 ---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
              ++D+   A++ F EM+ + + P  ++YT+L+     +   + A  +  +M ++  ++
Sbjct: 355 KEKMVDE---AMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKM-KEQGIQ 410

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            D+ ++ +L++  C+ G +E AK   +R+   G++ NV TY  + NG+  A   GEA+
Sbjct: 411 PDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAM 468



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/475 (23%), Positives = 206/475 (43%), Gaps = 60/475 (12%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V  ++T++  L   G +G +++ K+   V+ +          +  KPD   YN++++ 
Sbjct: 271 PDVCTFNTLIDAL---GKEGKMKAAKIVLAVMMK----------ACIKPDVVTYNSLIDG 317

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
              L K K    +F  M + G  P+V TY  MI    +       + + E +    +   
Sbjct: 318 YFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPD 377

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDYSSENEGDDDDDD 185
           + T+ SL+        LE A  + + M+E   + DV      LD    +    G  ++  
Sbjct: 378 IVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLD----ALCKGGRLENAK 433

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           E F++LL              K +  N + Y  ++ G        + + +   M   E  
Sbjct: 434 EFFQRLLV-------------KGYHLNVQTYNVMINGLCKADLFGEAMDLKSKM---EGK 477

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR------------------- 286
              PD +T+ T++ AL +    D+A ++L EM   G+   R                   
Sbjct: 478 GCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACI 537

Query: 287 ----ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
               +TY  L+ GY    ++  AK +   MA    + P+V  Y I+IDG         A+
Sbjct: 538 KPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMG-VTPNVQCYTIMIDGLCKKKTVDEAM 596

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
           + F EM+ + + P  ++YT+L+ A   +   + A  +  EM ++  ++ D+ ++ +L++G
Sbjct: 597 SLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEM-KEHGIQPDVYSYTILLDG 655

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            C+ G +E AK I +R+   G++ NV  Y ++ N +  A    EAL L  +++++
Sbjct: 656 LCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDK 710



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/427 (19%), Positives = 168/427 (39%), Gaps = 60/427 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M +SG  P+V+ ++T++  L            K+ D  +    +    +++    PD   
Sbjct: 334 MAQSGVTPNVRTYTTMIDGLCKE---------KMVDEAMSLFEEMKYKNMI----PDIVT 380

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++        ++ + L  +M E G +PDV +Y +++    +  R        +R+L
Sbjct: 381 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLL 440

Query: 121 EMGITLCMTTFQSLVAAYVG---FG----------------DLEIAETIVQAMREGRRD- 160
             G  L + T+  ++        FG                D    +TI+ A+ E   + 
Sbjct: 441 VKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDEND 500

Query: 161 -VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS--SEPPLLPKTF-------- 209
              KI+RE+         +    +   V   +    I P   +   L+   F        
Sbjct: 501 KAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHA 560

Query: 210 ------------APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                        PN + YT ++ G   +  V + + +   M+ +      P+ VTYT++
Sbjct: 561 KYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKN---MFPNIVTYTSL 617

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           + AL K   ++RA  +L EM   G+  +  +Y ILL G C+  +++ AKE+ + +     
Sbjct: 618 IDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKG- 676

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
              +V  Y  +I+          AL    +M  +G  P  +++  ++ A     +   A 
Sbjct: 677 YHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAE 736

Query: 378 KVFDEML 384
           K+  EM+
Sbjct: 737 KILXEMI 743



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 24/231 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KPD   Y  +++    + + K    +F  M + G  P+V  Y +MI  LC + +    + 
Sbjct: 538 KPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMS 597

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLE 171
            + E +    +   + T+ SL+ A      LE A  +++ M+E   + DV      LD  
Sbjct: 598 -LFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGL 656

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             S   EG      E+F++LL              K +  N ++YT ++      G   +
Sbjct: 657 CKSGRLEGAK----EIFQRLLV-------------KGYHLNVQVYTAMINELCKAGLFDE 699

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
               L    + ED    PD VT+  ++ AL +    D+A ++L EM   G+
Sbjct: 700 A---LDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 202/452 (44%), Gaps = 33/452 (7%)

Query: 32  VKLFDVVVKRVRKFSDPDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQLFD 82
           V +F+V++  + K  +PD           S  KP+   YN V++     G  +K  +L +
Sbjct: 97  VYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLE 156

Query: 83  QMHEFGAK--PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140
           +M   G K  PD++TYN +I    RASR        E++   GI   + T   LV+    
Sbjct: 157 EMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICK 216

Query: 141 FGDLEIAETIVQAMREGRR--DVC---KIIRELDLEDYSSE-----NEGDDDDDDEVFEK 190
            GD+E A  I+  M+      DV     II  L +     E            D   F  
Sbjct: 217 DGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNT 276

Query: 191 LLPNSINPSSEPPLLP-------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
           LL         P  L        +   P+   YT L+ G    G+V     +L  + RQ 
Sbjct: 277 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQ- 335

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                PD + YT++V  L K+G ++ A +++ EM+  G     + Y+ L+ GYC+   + 
Sbjct: 336 --GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVH 393

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           KA+E+L EM     + P + +YNI++ G I     + A++  +++ ARG  P  ++Y TL
Sbjct: 394 KAREILAEMV-SINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTL 452

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +     +++ + A  + DEM        D V    +V G CR+G V++A  ++  M    
Sbjct: 453 IDGLCKANRVREACDLADEMASRGCFPND-VTLGSVVFGLCRVGRVDDAWSLVVEMSRKR 511

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             PNV  Y SL +G+  + +  +A ++   ++
Sbjct: 512 HAPNVVVYTSLIDGLCKSDRMDDACMVLDAMR 543



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 118/488 (24%), Positives = 208/488 (42%), Gaps = 48/488 (9%)

Query: 34  LFDVVVKRVRKFSDPDIVSD-----SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           L D++VK    F    +  D       P+   +  ++      G+  + L+    + EF 
Sbjct: 33  LLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFS 92

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
             PDV  +NV+I    +       V + E +    +   + T+ ++++     G+LE A 
Sbjct: 93  VAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKAR 152

Query: 149 TIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF-EKLLPNSINPSSEPPLLP 206
            +++ M R+G +    I+    L   ++        +   F EK+    IN         
Sbjct: 153 ELLEEMIRKGGKSAPDIVTYNTL--INAFYRASRIREACAFREKMKAAGIN--------- 201

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
               P+      L+ G   +G V + + +L  M+        PD +TY +++ AL  AG 
Sbjct: 202 ----PDVLTCNILVSGICKDGDVEEALEILDGMKLA---GPVPDVITYNSIIHALCVAGK 254

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A ++L  M+      + +T+N LL G+C+   + +A E+L EM  +  I PDV++Y 
Sbjct: 255 VVEAAEILKTMS---CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE-NILPDVITYT 310

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LR 385
           IL++G   +     A     E+  +G  P  I+YT+L+     S + + A+K+  EM +R
Sbjct: 311 ILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVR 370

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
             R  V  V ++ LV GYCR G V +A+ I+  M      P + TY  +  G+       
Sbjct: 371 GCRTGV--VMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSIS 428

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
           +A+ L  ++  R  V                PD    + L D   +A   R+A ++   M
Sbjct: 429 KAVSLISDLVARGYV----------------PDVVTYNTLIDGLCKANRVREACDLADEM 472

Query: 506 EEHGIPPN 513
              G  PN
Sbjct: 473 ASRGCFPN 480



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 61/385 (15%)

Query: 73  KPKKFLQLFDQMHEF-GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           +P   +Q FD   E  G K DV +YN ++ +  ++        V + +L  G +  + TF
Sbjct: 6   RPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTF 65

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
           + L+      G         QAMR       + +R LD  ++S                 
Sbjct: 66  KILIRGNCKAG---------QAMR-----ALEFLRALD--EFS----------------- 92

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
                             AP+  I+  L+ G   +G     V++   M   E +   P+ 
Sbjct: 93  -----------------VAPDVYIFNVLIHGLFKDGNPDQAVKLFENM---ESSRVKPEI 132

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA--NRITYNILLKGYCQQLQIDKAKELL 309
           VTY TV+S L K+G++++AR++L EM R G  +  + +TYN L+  + +  +I +A    
Sbjct: 133 VTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAF- 191

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           RE    A I PDV++ NIL+ G     D   AL   + M+  G  P  I+Y +++ A  +
Sbjct: 192 REKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCV 251

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           + +   A ++   M   P    D+V +N L++G+C+ G++  A  ++E M      P+V 
Sbjct: 252 AGKVVEAAEILKTMSCSP----DLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVI 307

Query: 430 TYGSLANGISLARKPGEALLLWKEI 454
           TY  L NG+    +   A  L +EI
Sbjct: 308 TYTILVNGLCRVGQVQVAFYLLEEI 332



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 131/312 (41%), Gaps = 57/312 (18%)

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           ++D   H  H +Y  ++  LVK+G   R  +V  ++   G   N +T+ IL++G C+  Q
Sbjct: 19  EQDGYKHDVH-SYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQ 77

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
             +A E LR + D+  + PDV  +N+LI G     +   A+  F  M +  + P  ++Y 
Sbjct: 78  AMRALEFLRAL-DEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYN 136

Query: 362 TLMKAFALSSQPKLANKVFDEMLRD----------------------------------- 386
           T++     S   + A ++ +EM+R                                    
Sbjct: 137 TVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMK 196

Query: 387 -PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              +  D++  N+LV G C+ G VEEA  I++ MK  G  P+V TY S+ + + +A K  
Sbjct: 197 AAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVV 256

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
           EA  + K +                      PD    + L D   +A    +ALE++  M
Sbjct: 257 EAAEILKTMS-------------------CSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 297

Query: 506 EEHGIPPNKTKY 517
               I P+   Y
Sbjct: 298 CRENILPDVITY 309



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 174/405 (42%), Gaps = 42/405 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVK------R 41
           M  +G  P V   + +VS +   GD              GPV  V  ++ ++       +
Sbjct: 195 MKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGK 254

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
           V + ++        PD   +N +L+     G   + L++ ++M      PDV+TY +++ 
Sbjct: 255 VVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVN 314

Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRR 159
              R  +  +  ++LE I+  G    +  + SLV      G++E A  +V+ M  R  R 
Sbjct: 315 GLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRT 374

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
            V  ++    +  Y     G+     E+  +++  SIN    PPL           Y  +
Sbjct: 375 GV--VMYSSLVSGYC--RAGNVHKAREILAEMV--SINMV--PPLFT---------YNIV 417

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G + +G +S  V ++  +  +      PD VTY T++  L KA  +  A  +  EM  
Sbjct: 418 LGGLIKDGSISKAVSLISDLVAR---GYVPDVVTYNTLIDGLCKANRVREACDLADEMAS 474

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G   N +T   ++ G C+  ++D A  L+ EM+   +  P+VV Y  LIDG    D   
Sbjct: 475 RGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRK-RHAPNVVVYTSLIDGLCKSDRMD 533

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
            A    + MR +G+A    +Y  L+ + +   +   A  ++DEM+
Sbjct: 534 DACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMV 578


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 226/488 (46%), Gaps = 45/488 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    +   L + A   +    + L +QM  FG   +V + N++I    R +     + 
Sbjct: 89  RPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAIS 148

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-DVCK---IIRELD 169
           VL ++ ++GI     TF +L+      G+++ A  +   M R G + DV     +I  L 
Sbjct: 149 VLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLC 208

Query: 170 LEDYSS---------ENEGDDDD--------DDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
               +S         E +G   +        D    + L+ ++++  SE  ++ +   P+
Sbjct: 209 KSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSE--MVDRGIPPD 266

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y+T++ G+ + G +++   +   M  +      P+ VT+T +V  L K G +  AR 
Sbjct: 267 VVTYSTILHGFCSLGHLNEATILFNEMVGRN---VMPNTVTFTILVDGLCKEGMVSEARC 323

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V   MT+ G   N  TYN L+ GYC   Q+D+A+++L  M D     P V SYNILI+G+
Sbjct: 324 VFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKG-CAPVVHSYNILINGY 382

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                   A +   EM  + + P  ++Y+TLM+      +P+ A  +F EM     +  D
Sbjct: 383 CKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLP-D 441

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           ++ ++ L++G C+ G ++EA ++++ M+E+   P++  Y  L  G+ +A K    L + K
Sbjct: 442 LMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGK----LEVAK 497

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E+  +       + AD  + P ++    ++  L    ++     +A E+   ME+ G  P
Sbjct: 498 ELFSK-------LFADG-IQPTIRTYTIMIKGL----LKEGLSDEAYELFRKMEDDGFLP 545

Query: 513 NKTKYKKI 520
           N   Y  I
Sbjct: 546 NSCSYNVI 553



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 203/489 (41%), Gaps = 103/489 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P    ++T+++     G+    E+V LF+ +V+R             +PD  +
Sbjct: 153 MFKLGIQPDAITFNTLINGRCIEGEIK--EAVGLFNEMVRR-----------GHQPDVIS 199

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ V+N     G     LQL  +M E G KP+++ Y  +I    + +  +  + +L  ++
Sbjct: 200 YSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMV 259

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI   + T+ +++  +   G L  A  +   M                          
Sbjct: 260 DRGIPPDVVTYSTILHGFCSLGHLNEATILFNEM-------------------------- 293

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   + +   PN+  +T L+ G   EG VS+   +  AM 
Sbjct: 294 ------------------------VGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMT 329

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++    + P+  TY  ++        MD A++VL  M   G      +YNIL+ GYC++ 
Sbjct: 330 KK---GAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRR 386

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+AK LL EM++  ++ PD V+Y+ L+ G   +     AL  F EM + G+ P  ++Y
Sbjct: 387 RLDEAKSLLVEMSEK-ELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTY 445

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG------------------ 402
           +TL+           A K+   M ++ +++ DIV +N+L+EG                  
Sbjct: 446 STLLDGLCKHGHLDEALKLLKSM-QESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLF 504

Query: 403 ----------YCRM-------GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
                     Y  M       GL +EA  +  +M+++GF PN  +Y  +  G    +   
Sbjct: 505 ADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSS 564

Query: 446 EALLLWKEI 454
            A+ L  E+
Sbjct: 565 TAIRLIDEM 573



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 178/408 (43%), Gaps = 50/408 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGP-----------------VESVKLFDVVVKRVR 43
           M+R G+ P V ++STV++ L  SG+                    V    + D + K   
Sbjct: 188 MVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTL 247

Query: 44  KFSDPDIVSDS-----KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
                D++S+       PD   Y+ +L+   +LG   +   LF++M      P+ +T+ +
Sbjct: 248 VNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTI 307

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           ++    +         V E + + G      T+ +L+  Y     ++ A+ ++  M +  
Sbjct: 308 LVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVD-- 365

Query: 159 RDVCKIIRELDL--EDYSSENEGDDDDD--DEVFEK-LLPNSINPSS---------EPP- 203
           +    ++   ++    Y      D+      E+ EK L P+++  S+          P  
Sbjct: 366 KGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQE 425

Query: 204 -------LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                  +      P+   Y+TL+ G    G + + +++L +M   +++   PD V Y  
Sbjct: 426 ALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSM---QESKIEPDIVLYNI 482

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  +  AG ++ A+++ +++   G+     TY I++KG  ++   D+A EL R+M DD 
Sbjct: 483 LIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDG 542

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
            + P+  SYN++I GF+   DS+ A+   +EM  +  +    ++  L+
Sbjct: 543 FL-PNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLL 589


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 192/465 (41%), Gaps = 71/465 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +L + A +      L L  QM  FG  P+V T N++I      +R      V
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G     TTF +L+                       R +C             
Sbjct: 123 LAKILKLGHQPDPTTFTTLI-----------------------RGLCV------------ 147

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K++                F PN   Y TL+ G    G  S  +R+
Sbjct: 148 --EGKIGEALHLFDKMIDEG-------------FQPNVVTYGTLINGLCKVGNTSAAIRL 192

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R  E     PD V YT+++ +L K   +  A  + ++M   G+  +  TY  L+  
Sbjct: 193 L---RSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHA 249

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL +M  ++KI PDVV ++ ++D          A    + M  RG+ P
Sbjct: 250 LCNLCEWKHVTTLLNQMV-NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEP 308

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YTTLM    L S+   A KVFD M+R      D++++  L+ GYC++  +++A  +
Sbjct: 309 DVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG-FAPDVISYTTLINGYCKIHKIDKAMYL 367

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            E M    + P+  TY +L  G+    +  +A+ L+ E+  R ++            P L
Sbjct: 368 FEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQM------------PDL 415

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                LLD+L     +     +A+ ++  +E   + P+   Y  I
Sbjct: 416 VTYSILLDSLC----KNRHLEEAMALLKAIEASNLNPDIQVYNII 456



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 188/438 (42%), Gaps = 68/438 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P    ++T++  L   G  G  E++ LFD ++               +P+   
Sbjct: 126 ILKLGHQPDPTTFTTLIRGLCVEGKIG--EALHLFDKMID-----------EGFQPNVVT 172

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +PDV+ Y  +I    +  +      +  +++
Sbjct: 173 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMV 232

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ SLV A     + +   T++  M                          
Sbjct: 233 GQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQM-------------------------- 266

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 V  K+LP+ +                  I++T++     EG+V++   ++  M 
Sbjct: 267 ------VNSKILPDVV------------------IFSTVVDALCKEGKVTEAHEIVDMMI 302

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      PD VTYTT++        MD A +V   M R G   + I+Y  L+ GYC+  
Sbjct: 303 QR---GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIH 359

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +IDKA  L  EM     I PD  +YN L+ G   +     A+  F+EM ARG  P  ++Y
Sbjct: 360 KIDKAMYLFEEMCRKEWI-PDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTY 418

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L+ +   +   + A  +  + +    +  DI  +N++++G CR G +E A+ +   + 
Sbjct: 419 SILLDSLCKNRHLEEAMALL-KAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS 477

Query: 421 ENGFYPNVATYGSLANGI 438
             G +P+V TY  + +G+
Sbjct: 478 SKGLHPSVWTYNIMIHGL 495



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 185/427 (43%), Gaps = 39/427 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P+V  + T+++ L   G+             ++ +R         + +PD   
Sbjct: 161 MIDEGFQPNVVTYGTLINGLCKVGNT---------SAAIRLLRSMEQ----GNCQPDVVI 207

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y +++++     +  +   LF QM   G  PD+ TY  ++  LC     KH+   +L ++
Sbjct: 208 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT-LLNQM 266

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSEN 177
           +   I   +  F ++V A    G +  A  IV  M  R    DV      +D     SE 
Sbjct: 267 VNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEM 326

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
               D+  +VF+              ++ K FAP+   YTTL+ GY    ++   + +  
Sbjct: 327 ----DEAVKVFDM-------------MVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFE 369

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M R+E     PD  TY T++  L   G +  A  +  EM   G   + +TY+ILL   C
Sbjct: 370 EMCRKE---WIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLC 426

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +   +++A  LL+ + + + + PD+  YNI+IDG     +   A   F+ + ++G+ P+ 
Sbjct: 427 KNRHLEEAMALLKAI-EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSV 485

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            +Y  ++           ANK+F EM  +     D   +N +  G+ +      A +++E
Sbjct: 486 WTYNIMIHGLCKRGLLNEANKLFMEMDGND-CSPDGCTYNTIARGFLQNNETLRAIQLLE 544

Query: 418 RMKENGF 424
            M   GF
Sbjct: 545 EMLARGF 551


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 193/440 (43%), Gaps = 61/440 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +N +++A    G  +  + L D M   G KP ++TYN ++K   R  R      V
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREV 251

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G+   + +F  L+  +   G+LE A    + MR GRR    ++    L    +
Sbjct: 252 FRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMR-GRRVTPDVVSFSCLIGLFT 310

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G+ D   E   ++    +              P+  IYT ++ G+   G       M
Sbjct: 311 R-RGEMDHAAEYLREMREFGL-------------MPDGVIYTMVIGGFCRAGL------M 350

Query: 236 LGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           L A+R +++  +    PD VTY T+++ L K   +  A ++L EM   GVP +  T+  L
Sbjct: 351 LEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTL 410

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF-------------------- 332
           + GYC+   I+KA +    ++D  ++ PD+V+YN LIDG                     
Sbjct: 411 IHGYCRDGNIEKALQFFDTISDQ-RLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSRE 469

Query: 333 ---------ILIDDSA------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
                    ILID          A  F +EM  +GI P  ++Y +++K +  S       
Sbjct: 470 IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQ 529

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +   +M  D +V  D++ +N L+ GY + G + EA  +++ M+     P+  TY  + +G
Sbjct: 530 QFLPKMRHD-KVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISG 588

Query: 438 ISLARKPGEALLLWKEIKER 457
            S+     EA  ++K++  R
Sbjct: 589 FSVHGNMQEADWVYKKMGAR 608



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 152/329 (46%), Gaps = 35/329 (10%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E     PD VT+  +V A  +AG ++ A  ++  M   G+    +TYN +LKG  +  + 
Sbjct: 186 EKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRW 245

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           DKA+E+ R M D   + PDV S+N+LI GF    +   AL F+ EMR R + P  +S++ 
Sbjct: 246 DKAREVFRAM-DACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSC 304

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  F    +   A +   EM R+  +  D V + M++ G+CR GL+ EA R+ + M   
Sbjct: 305 LIGLFTRRGEMDHAAEYLREM-REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAF 363

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G  P+V TY +L NG+   R+  +A  L  E+KER             +PP L     L+
Sbjct: 364 GCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKER------------GVPPDLCTFTTLI 411

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY----------------KKIYVEMHS 526
                   R     KAL+    + +  + P+   Y                 +++ +MHS
Sbjct: 412 HGYC----RDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHS 467

Query: 527 RMFTSKHASQA-RQDRRRERKRAAEAFKF 554
           R     H + +   D   E+ +   AF F
Sbjct: 468 REIFPNHVTYSILIDSHCEKGQVDNAFAF 496



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 191/423 (45%), Gaps = 25/423 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YN+VL      G+  K  ++F  M   G  PDV ++N++I    RA      + 
Sbjct: 226 KPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALR 285

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             + +    +T  + +F  L+  +   G+++ A   ++ MRE       +I  + +  + 
Sbjct: 286 FYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFC 345

Query: 175 SEN---EGDDDDDDEVFEKLLPNSINPSSEPPLLPK-----------------TFAPNSR 214
                 E     D+ V    LP+ +  ++    L K                    P+  
Sbjct: 346 RAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLC 405

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            +TTL+ GY  +G +   ++    +    D    PD VTY T++  + + G + +A ++ 
Sbjct: 406 TFTTLIHGYCRDGNIEKALQFFDTI---SDQRLRPDIVTYNTLIDGMCRQGDLGKANELW 462

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M    +  N +TY+IL+  +C++ Q+D A   L EM +   I P++++YN +I G+  
Sbjct: 463 DDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG-IVPNIMTYNSIIKGYCR 521

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
             + +    F  +MR   + P  I+Y TL+  +    +   A  +  +++ +  V+ D V
Sbjct: 522 SGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLL-KIMENENVQPDAV 580

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +NM++ G+   G ++EA  + ++M   G  P+  TY S+ NG  +A    ++  L  E+
Sbjct: 581 TYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEM 640

Query: 455 KER 457
            ++
Sbjct: 641 LQK 643



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 154/372 (41%), Gaps = 55/372 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  V+      G   + L++ D+M  FG  PDV+TYN ++    +  R      +
Sbjct: 332 PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEEL 391

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G+   + TF +L+  Y   G++E A      + + R                 
Sbjct: 392 LNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQR----------------- 434

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              P+   Y TL+ G   +G +     +
Sbjct: 435 ---------------------------------LRPDIVTYNTLIDGMCRQGDLGKANEL 461

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +E     P+HVTY+ ++ +  + G +D A   L EM   G+  N +TYN ++KG
Sbjct: 462 WDDMHSRE---IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKG 518

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+   + K ++ L +M  D K+ PD+++YN LI G++       A      M    + P
Sbjct: 519 YCRSGNVSKGQQFLPKMRHD-KVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQP 577

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y  ++  F++    + A+ V+ +M     ++ D   +  ++ G+   G  +++ ++
Sbjct: 578 DAVTYNMIISGFSVHGNMQEADWVYKKM-GARGIEPDRYTYMSMINGHVVAGNSKKSFQL 636

Query: 416 IERMKENGFYPN 427
            + M + G  P+
Sbjct: 637 HDEMLQKGLAPD 648



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 107/514 (20%), Positives = 201/514 (39%), Gaps = 52/514 (10%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + S   P    ++ ++       KP++  + F  + +          N ++   +RA   
Sbjct: 81  LASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALSRAGWP 140

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
           HL       +L     +   T   +V +Y         +T++  M   +R V   +   +
Sbjct: 141 HLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEME--KRCVFPDVVTHN 198

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINP------SSEPPLLPK---------------- 207
           +   +    GD +    + + ++   I P      S    LL                  
Sbjct: 199 VMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDAC 258

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
             AP+ R +  L+ G+   G + + +R    MR +      PD V+++ ++    + G M
Sbjct: 259 GVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVT---PDVVSFSCLIGLFTRRGEM 315

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           D A + L EM   G+  + + Y +++ G+C+   + +A  +  EM     + PDVV+YN 
Sbjct: 316 DHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCL-PDVVTYNT 374

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L++G       + A    NEM+ RG+ P   ++TTL+  +      + A + FD  + D 
Sbjct: 375 LLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDT-ISDQ 433

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           R++ DIV +N L++G CR G + +A  + + M     +PN  TY  L +      +   A
Sbjct: 434 RLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNA 493

Query: 448 LLLWKE----------------IKERCEVKKEGVNADSDLPPPLKPDEELLD-----ALA 486
                E                IK  C  +   V+      P ++ D+ + D      L 
Sbjct: 494 FAFLDEMVNKGIVPNIMTYNSIIKGYC--RSGNVSKGQQFLPKMRHDKVMPDLITYNTLI 551

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              V+     +A  ++  ME   + P+   Y  I
Sbjct: 552 HGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMI 585



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 111/276 (40%), Gaps = 58/276 (21%)

Query: 49  DIVSDSK--PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCAR 105
           D +SD +  PD   YN +++     G   K  +L+D MH     P+ +TY+++I   C +
Sbjct: 428 DTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEK 487

Query: 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII 165
               +   F L+ ++  GI   + T+ S++  Y   G++   +  +  MR          
Sbjct: 488 GQVDNAFAF-LDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRH--------- 537

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
                                  +K++P+ I                   Y TL+ GY+ 
Sbjct: 538 -----------------------DKVMPDLIT------------------YNTLIHGYVK 556

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
           EG++ +   +L  M   E+    PD VTY  ++S     G+M  A  V  +M   G+  +
Sbjct: 557 EGKMHEAFNLLKIM---ENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPD 613

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
           R TY  ++ G+       K+ +L  EM     + PD
Sbjct: 614 RYTYMSMINGHVVAGNSKKSFQLHDEMLQKG-LAPD 648


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 213/455 (46%), Gaps = 32/455 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +LR G +P V +++ +++ L    ++   E+++L  ++          D   D  PD  +
Sbjct: 43  LLRRG-IPDVFSYNILLNGLC--DENRSQEALELLHIM---------ADDGGDCPPDVVS 90

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ V+N     G   K    +++M +    P+V+TYN +I    +A      + VL  ++
Sbjct: 91  YSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMV 150

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S+V  +   G  + A   ++ MR    +   ++    L DY  +N G 
Sbjct: 151 KSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEP-DVVTYNSLMDYLCKN-GR 208

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F+ +    + P                 Y TL++GY  +G + +   +L  M 
Sbjct: 209 CTEARKIFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMHGLLDLMV 255

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N  HP+H  ++ +V A  K   ++ A  V ++M + G+  N +TY  ++   C+  
Sbjct: 256 R---NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSG 312

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ A     +M D+  + P  + YN LI G    +    A     EM  RGI    I +
Sbjct: 313 RVEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFF 371

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++ +     +   + K+FD M+R   VK DI+ ++ L++GYC  G ++EA +++  M 
Sbjct: 372 NSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 430

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             G  P+  TY +L NG     +  +AL+L++E++
Sbjct: 431 SVGMKPDCVTYSTLINGYCKISRMKDALVLFREME 465



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/493 (21%), Positives = 214/493 (43%), Gaps = 87/493 (17%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESV-KLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           P+V  ++++++ L  +      ++V K  +V+   V+        S   PD   YN++++
Sbjct: 121 PNVVTYNSIIAALCKA------QTVDKAMEVLTTMVK--------SGVMPDCMTYNSIVH 166

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
              + G+PK+ +    +M   G +PDV+TYN ++    +  R      + + + + G+  
Sbjct: 167 GFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKP 226

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRD--------VCKIIRELDLED----Y 173
            +TT+ +L+  Y   G L     ++  M R G           VC   ++  +E+    +
Sbjct: 227 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVF 286

Query: 174 SSENE--------------------GDDDDDDEVFEKLLPNSINPS-------------- 199
           S   +                    G  +D    FE+++   ++P               
Sbjct: 287 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 346

Query: 200 -----SEPPLLP---KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
                +E  +L    +    N+  + +++  +  EGRV ++ ++   M R       PD 
Sbjct: 347 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRI---GVKPDI 403

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           +TY+T++     AG MD A ++LA M  +G+  + +TY+ L+ GYC+  ++  A  L RE
Sbjct: 404 ITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFRE 463

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M + + + PD+++YNI++ G      +A A   +  +   G      +Y  ++       
Sbjct: 464 M-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLC--- 519

Query: 372 QPKLANKVFDEMLRDPR------VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                NK+ D+ LR  +      +K++   +N++++   ++G  +EAK +      NG  
Sbjct: 520 ----KNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV 575

Query: 426 PNVATYGSLANGI 438
           PN  TY  +A  I
Sbjct: 576 PNYWTYRLMAENI 588



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 111/479 (23%), Positives = 209/479 (43%), Gaps = 75/479 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-KPDTA 59
           M++SG +P    ++++V    +SG   P E++    V +K++R        SD  +PD  
Sbjct: 149 MVKSGVMPDCMTYNSIVHGFCSSGQ--PKEAI----VFLKKMR--------SDGVEPDVV 194

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++     G+  +  ++FD M + G KP++ TY  +++  A       +  +L+ +
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 254

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIRE 167
           +  GI      F  LV AY     +E A  +   MR+   +            +CK  R 
Sbjct: 255 VRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 314

Query: 168 LDLEDYSSE--NEGDDDDDDEVFEKLLP-----NSINPSSEPPL--LPKTFAPNSRIYTT 218
            D   Y  +  +EG    +  V+  L+      N    + E  L  L +    N+  + +
Sbjct: 315 EDAMLYFEQMIDEGLSPGNI-VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 373

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++  +  EGRV ++ ++   M R       PD +TY+T++     AG MD A ++LA M 
Sbjct: 374 IIDSHCKEGRVIESEKLFDLMVRI---GVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 430

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
            +G+  + +TY+ L+ GYC+  ++  A  L REM + + + PD+++YNI++ G      +
Sbjct: 431 SVGMKPDCVTYSTLINGYCKISRMKDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRT 489

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFA-------------------LSSQPKLANKV 379
           A A   +  +   G      +Y  ++                       L  + +  N +
Sbjct: 490 AAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIM 549

Query: 380 FDEML---RDPRVKVDIVAWN------------MLVEGYCRMGLVEEAKRIIERMKENG 423
            D +L   R+   K   VA++            ++ E     GL+EE  ++   M++NG
Sbjct: 550 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 608



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 103/189 (54%), Gaps = 3/189 (1%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-KIEPDVVSYNIL 328
           AR V  E+ R G+P +  +YNILL G C + +  +A ELL  MADD     PDVVSY+ +
Sbjct: 36  ARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTV 94

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+GF    D     + +NEM  + I+P  ++Y +++ A   +     A +V   M++   
Sbjct: 95  INGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG- 153

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V  D + +N +V G+C  G  +EA   +++M+ +G  P+V TY SL + +    +  EA 
Sbjct: 154 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEAR 213

Query: 449 LLWKEIKER 457
            ++  + +R
Sbjct: 214 KIFDSMTKR 222


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 176/402 (43%), Gaps = 53/402 (13%)

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
            K DV ++ +MIK C           VL ++ EMG++  +  + +L+      GD+E  +
Sbjct: 147 VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGK 206

Query: 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
            +   M  G  DV        +        G   D  E++EK+    I            
Sbjct: 207 QLFYKM--GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGI------------ 252

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN   Y +++    N+G++++   +   MR +       + VTY T++  L +   + 
Sbjct: 253 -VPNVYTYNSMICRCCNDGKLNNAFELFDEMRER---GVACNVVTYNTLIGGLCQERRVL 308

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +++  M R G+  N I+YN L+ GYC    +DKA  L  +M    +  P + +YNIL
Sbjct: 309 EAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQ-SPSLATYNIL 367

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM----- 383
           I GF    +SAG      EM ARG++P+K++YT LM A   S   + A +++  M     
Sbjct: 368 IAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL 427

Query: 384 -----------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                                        L +  +K + V +N ++ GYC+ G    A R
Sbjct: 428 VADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALR 487

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           +++ M ENG  PNVA+Y S    +    K  EA +L K++ E
Sbjct: 488 LLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIE 529



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 21/295 (7%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  ++KG    G +     +LG M   E+    P+ V YTT++    K G ++R +Q+  
Sbjct: 154 FGIMIKGCCEVGYLDKGFEVLGQM---EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFY 210

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M  + V AN+ TY +L+ G+ +        EL  +M     I P+V +YN +I      
Sbjct: 211 KMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTG-IVPNVYTYNSMICRCCND 269

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A   F+EMR RG+A   ++Y TL+       +   A ++   M RD  +  ++++
Sbjct: 270 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDG-LSPNLIS 328

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N L++GYC +G +++A  +  +MK +G  P++ATY  L  G S A+       + +E++
Sbjct: 329 YNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREME 388

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            R                 L P +     L D  VR+    KA +I + ME+ G+
Sbjct: 389 AR----------------GLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL 427



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 177/403 (43%), Gaps = 49/403 (12%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V  ++T++     +GD   +E  K      +   K  + D+V++       Y  +
Sbjct: 181 GLSPNVVVYTTLIDGCCKNGD---IERGK------QLFYKMGELDVVANQ----YTYTVL 227

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N    +G  K  ++L+++M   G  P+V TYN MI  C    + +    + + + E G+
Sbjct: 228 INGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGV 287

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMR--EGRRDVCKIIREL---DLEDYSSENEG 179
              + T+ +L+              + Q  R  E  R +C++ R+    +L  Y++  +G
Sbjct: 288 ACNVVTYNTLIGG------------LCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDG 335

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM---NEGRVSDTVRML 236
                +      L N +  S + P L          Y  L+ G+    N   V+D V   
Sbjct: 336 YCSIGNLDKASSLFNQMKSSGQSPSLAT--------YNILIAGFSEAKNSAGVTDMV--- 384

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              R  E     P  VTYT ++ ALV++ ++++A Q+ + M + G+ A+   Y +L+ G 
Sbjct: 385 ---REMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGL 441

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C    + +A +L + + D+  ++P+ V YN +I G+     S  AL    EM   G+ P 
Sbjct: 442 CVVGDMKEASKLFKSL-DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 500

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
             SY + +       +   A  +  +M+ +  +K  I  WNM+
Sbjct: 501 VASYNSTIXILCKDEKWTEAEVLLKDMI-ELGLKPSISIWNMI 542



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 133/304 (43%), Gaps = 54/304 (17%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P   T+  ++  L+K+   ++A +V  E T+  V  +  ++ I++KG C+   +DK  E+
Sbjct: 115 PGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEV 173

Query: 309 LREMADDAKIEPDVV-----------------------------------SYNILIDGFI 333
           L +M ++  + P+VV                                   +Y +LI+GF 
Sbjct: 174 LGQM-EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFF 232

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            +      +  + +M+  GI P   +Y +++       +   A ++FDEM R+  V  ++
Sbjct: 233 KMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEM-RERGVACNV 291

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L+ G C+   V EA+R++ RMK +G  PN+ +Y +L +G        +A  L+ +
Sbjct: 292 VTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 351

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +K             S   P L     L+   ++    A       ++V  ME  G+ P+
Sbjct: 352 MK------------SSGQSPSLATYNILIAGFSEAKNSAG----VTDMVREMEARGLSPS 395

Query: 514 KTKY 517
           K  Y
Sbjct: 396 KVTY 399



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 21/199 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL + N+M  RG+ P   ++  L+     S+  + A +VF+E      VK+D+ ++ +++
Sbjct: 101 ALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE--TKGNVKLDVYSFGIMI 158

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI----------SLARKPGEALLL 450
           +G C +G +++   ++ +M+E G  PNV  Y +L +G            L  K GE  ++
Sbjct: 159 KGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVV 218

Query: 451 WKEIKE--------RCEVKKEGVNADSDLP-PPLKPDEELLDALADICVRAAFFRKALEI 501
             +           +  +KK+G+     +    + P+    +++   C        A E+
Sbjct: 219 ANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFEL 278

Query: 502 VACMEEHGIPPNKTKYKKI 520
              M E G+  N   Y  +
Sbjct: 279 FDEMRERGVACNVVTYNTL 297



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 18/239 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +YN +++   ++G   K   LF+QM   G  P + TYN++I   + A     +  +
Sbjct: 324 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 383

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  +   G++    T+  L+ A V   ++E A  I  +M +        I  + +     
Sbjct: 384 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 443

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              GD  +  ++F+ L         E  L      PN  IY T++ GY  EG     +R+
Sbjct: 444 --VGDMKEASKLFKSL--------DEMHL-----KPNDVIYNTMIYGYCKEGSSYRALRL 488

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           L  M    +N   P+  +Y + +  L K      A  +L +M  +G+  +   +N++ K
Sbjct: 489 LKEMG---ENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISK 544


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 188/436 (43%), Gaps = 53/436 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P     +++LN   +  +    + L DQM E G +PD +T+  +I      ++    V 
Sbjct: 77  EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 136

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R+++ G    + T+  +V      GD+++A  ++  M   + +   +I    ++   
Sbjct: 137 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC 196

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                DD             ++N   E  +  K   PN   Y++L+    + GR SD  +
Sbjct: 197 KYRHVDD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VT+  ++ A VK G    A ++  +M +  +  +  TYN L+ 
Sbjct: 242 LLSDMIEKKIN---PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLIN 298

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C   ++DKAK++   M       PD+ +YN LI GF            F EM  RG+ 
Sbjct: 299 GFCMHDRLDKAKQMFEFMVS-KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 357

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
              ++YTTL++          A KVF +M+ D                            
Sbjct: 358 GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEV 417

Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                   +K+DI  +  ++EG C+ G V++   +   +   G  PNV TY ++ +G+  
Sbjct: 418 FDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 477

Query: 441 ARKPGEALLLWKEIKE 456
            R   EA  L K++KE
Sbjct: 478 KRLLQEAYALLKKMKE 493



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/481 (22%), Positives = 201/481 (41%), Gaps = 88/481 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A A + K    + L ++M   G   ++ TYN++I    R S+  L + +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  Y     +  A  +V  M E                   
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE------------------- 108

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            + P++  +TTL+ G     + S+ V +
Sbjct: 109 -------------------------------MGYRPDTITFTTLIHGLFLHNKASEAVAL 137

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M ++      P+ VTY  VV+ L K G +D A  +L +M    + A+ + +N ++  
Sbjct: 138 VDRMVQR---GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDS 194

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   +D A  L +EM +   I P+VV+Y+ LI         + A    ++M  + I P
Sbjct: 195 LCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 253

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             +++  L+ AF    +   A K+ D+M++   DP    DI  +N L+ G+C    +++A
Sbjct: 254 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP----DIFTYNSLINGFCMHDRLDKA 309

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EG 464
           K++ E M     +P++ TY +L  G   +++  +   L++E+  R  V          +G
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 369

Query: 465 VNADSD---------------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           +  D D               +PP +     LLD L +         KALE+   M++  
Sbjct: 370 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN----NGKLEKALEVFDYMQKSE 425

Query: 510 I 510
           I
Sbjct: 426 I 426



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 186/447 (41%), Gaps = 43/447 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P++  +  VV+ L   GD          D+    + K     I    + D   
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGD---------IDLAFNLLNKMEAAKI----EADVVI 187

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++++          L LF +M   G +P+V+TY+ +I       R      +L  ++
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E  I   + TF +L+ A+V  G    AE +         D+ K   + D+  Y+S   G 
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKL-------HDDMIKRSIDPDIFTYNSLINGF 300

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D   ++FE              ++ K   P+   Y TL+KG+    RV D   +
Sbjct: 301 CMHDRLDKAKQMFE-------------FMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R         D VTYTT++  L   G  D A++V  +M   GVP + +TY+ILL G
Sbjct: 348 F---REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +++KA E+   M   ++I+ D+  Y  +I+G             F  +  +G+ P
Sbjct: 405 LCNNGKLEKALEVFDYM-QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 463

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y T++         + A  +  +M  D  +  D   +N L+  + R G    +  +
Sbjct: 464 NVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP-DSGTYNTLIRAHLRDGDKAASAEL 522

Query: 416 IERMKENGFYPNVATYGSLANGISLAR 442
           I  M+   F  + +T G +AN +   R
Sbjct: 523 IREMRSCRFVGDASTIGLVANMLHDGR 549


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 216/471 (45%), Gaps = 51/471 (10%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S P   AYN +L     +GK  + L++F++M +  A P++ TYN++I +  RA +     
Sbjct: 339 SIPSVIAYNCILTCLRKMGKVDEALRVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDCAF 397

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIREL 168
            + + + + G+   + T   +V        L+ A  I + M            C +I  L
Sbjct: 398 ELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGL 457

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
                     G  DD  +++EK+L +                 NS +YT+L+K + N GR
Sbjct: 458 G-------KVGRVDDAYKIYEKMLDSDCRT-------------NSIVYTSLIKNFFNHGR 497

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRI 287
             D  ++   M  Q  N S PD     T +  + KAG  ++ R +  E+ +R  VP  R 
Sbjct: 498 KEDGHKIYKDMVNQ--NCS-PDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDAR- 553

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           +Y+IL+ G  +    ++  EL   M +   +  D  +YNI+IDGF        A     E
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCV-LDTRAYNIVIDGFCKCGKVNKAYQLLEE 612

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M+ +G  PT ++Y +++   A   +   A  +F+E  +  R+++++V ++ L++G+ ++G
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA-KSKRIELNVVIYSSLIDGFGKVG 671

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGVN 466
            ++EA  I+E + + G  PNV T+ SL + +  A +  EAL+ ++ +KE +C        
Sbjct: 672 RIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKC-------- 723

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                     P++     L +   +   F KA      M++ G+ P+   Y
Sbjct: 724 ---------TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISY 765



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/532 (20%), Positives = 220/532 (41%), Gaps = 91/532 (17%)

Query: 7   LPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVKRVRKFSDPD---- 49
           +P   A++T++    ++G               G + SV  ++ ++  +RK    D    
Sbjct: 305 VPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALR 364

Query: 50  ----IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105
               +  D+ P+ + YN +++     GK     +L D M + G  P+V T N+M+    +
Sbjct: 365 VFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424

Query: 106 ASRKHLLVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
           + +      + E   +M   +C     TF SL+      G ++ A  I + M +      
Sbjct: 425 SQKLDEACAIFE---QMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTN 481

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP--------------SSEPP----- 203
            I+    ++++   N G  +D  ++++ ++  + +P              + EP      
Sbjct: 482 SIVYTSLIKNFF--NHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539

Query: 204 ---LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
              +  + F P++R Y+ L+ G +  G  ++T  +  +M+ Q       D   Y  V+  
Sbjct: 540 FEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ---GCVLDTRAYNIVIDG 596

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
             K G +++A Q+L EM   G     +TY  ++ G  +  ++D+A  L  E A   +IE 
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE-AKSKRIEL 655

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           +VV Y+ LIDGF  +     A     E+  +G+ P   ++ +L+ A   + +   A   F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCF 715

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRM---------------------------------- 406
             M ++ +   + V + +L+ G C++                                  
Sbjct: 716 QSM-KELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774

Query: 407 -GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            G + EA  + +R K NG  P+ A Y ++  G+S   +  +A  L++E + R
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 120/557 (21%), Positives = 231/557 (41%), Gaps = 60/557 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVES-VKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M   GY P V  ++T++   A    +G V+S + L D +     K S  D       D  
Sbjct: 194 MQELGYEPTVHLFTTLIRGFA---KEGRVDSALSLLDEM-----KSSSLD------ADIV 239

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN  +++   +GK     + F ++   G KPD +TY  MI +  +A+R    V + E +
Sbjct: 240 LYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL 299

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            +     C   + +++  Y   G  + A ++++  R        I     L        G
Sbjct: 300 EKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT--CLRKMG 357

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL-MKGYMNEGRVSDTVRMLGA 238
             D+   VFE++  ++    S   +L        ++     ++  M +  +   VR +  
Sbjct: 358 KVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNI 417

Query: 239 M-----------------RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           M                  + +     PD +T+ +++  L K G +D A ++  +M    
Sbjct: 418 MVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSD 477

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              N I Y  L+K +    + +   ++ ++M +     PD+   N  +D      +    
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQ-NCSPDLQLLNTYMDCMFKAGEPEKG 536

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPRVKVDIVAWNML 399
              F E+++R   P   SY+ L+       +   AN+ ++    +++    +D  A+N++
Sbjct: 537 RAMFEEIKSRRFVPDARSYSILIHGLI---KAGFANETYELFYSMKEQGCVLDTRAYNIV 593

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK-ERC 458
           ++G+C+ G V +A +++E MK  GF P V TYGS+ +G++   +  EA +L++E K +R 
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653

Query: 459 EVKKEGVNADSD------------------LPPPLKPDEELLDALADICVRAAFFRKALE 500
           E+     ++  D                  +   L P+    ++L D  V+A    +AL 
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALV 713

Query: 501 IVACMEEHGIPPNKTKY 517
               M+E    PN+  Y
Sbjct: 714 CFQSMKELKCTPNQVTY 730



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 202/483 (41%), Gaps = 45/483 (9%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           FDVV + +RKF         +P  +AY  ++ A + +      L LF QM E G +P V 
Sbjct: 153 FDVV-QNMRKFK-------FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVH 204

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
            +  +I+  A+  R    + +L+ +    +   +  +   + ++   G +++A      +
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEI 264

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
                   ++     +      N    D+  E+FE L  N          +P T+A    
Sbjct: 265 EANGLKPDEVTYTSMIGVLCKANR--LDEAVEMFEHLEKNR--------RVPCTYA---- 310

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y T++ GY + G+  +   +L    RQ    S P  + Y  +++ L K G +D A +V 
Sbjct: 311 -YNTMIMGYGSAGKFDEAYSLL---ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVF 366

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM +   P N  TYNIL+   C+  ++D A E LR+    A + P+V + NI++D    
Sbjct: 367 EEMKKDAAP-NLSTYNILIDMLCRAGKLDCAFE-LRDSMQKAGLFPNVRTVNIMVDRLCK 424

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 A   F +M  +   P +I++ +L+       +   A K++++ML D   + + +
Sbjct: 425 SQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKML-DSDCRTNSI 483

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +  L++ +   G  E+  +I + M      P++    +  + +  A +P +   +++EI
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI 543

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           K R                   PD      L    ++A F  +  E+   M+E G   + 
Sbjct: 544 KSR----------------RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDT 587

Query: 515 TKY 517
             Y
Sbjct: 588 RAY 590



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 136/306 (44%), Gaps = 15/306 (4%)

Query: 157 GRRDVCKIIRELDLEDYSSEN----EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
            R   CK +  L     + E     EG+    +++   L   +  PS+E  L    F P 
Sbjct: 5   ARTKFCKHLSSLSDNGENHEKPYTFEGNRQIVNDICNVLETGAWGPSAENALSALNFKPQ 64

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV--TYTTVVSALVKAGSMDRA 270
                 +++      R+ D  R +   R  E     P H   +Y +++  + +  + D  
Sbjct: 65  PEFVIGVLR------RLKDVNRAIEYFRWYERRTELP-HCPESYNSLLLVMARCRNFDAL 117

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            Q+L EM+  G   +  T   ++    +  ++ +  ++++ M    K  P   +Y  LI 
Sbjct: 118 DQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRK-FKFRPAFSAYTTLIG 176

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            F  ++ S   LT F +M+  G  PT   +TTL++ FA   +   A  + DEM +   + 
Sbjct: 177 AFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEM-KSSSLD 235

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DIV +N+ ++ + ++G V+ A +    ++ NG  P+  TY S+   +  A +  EA+ +
Sbjct: 236 ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEM 295

Query: 451 WKEIKE 456
           ++ +++
Sbjct: 296 FEHLEK 301


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 216/481 (44%), Gaps = 80/481 (16%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERIL 120
           N ++N+  +L +      +F ++ + G +PD++TY  +I+ LC     K  L F  +R++
Sbjct: 88  NILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNF-HDRLV 146

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI L   ++ +L+      G    A   ++ +R+   ++C+                 
Sbjct: 147 SQGIKLDHVSYGTLINGLCKIGQTGPA---LRLLRKIEGEICR----------------- 186

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P+  +Y T++ G   +  V D   +   M 
Sbjct: 187 ------------------------------PDVVMYNTIIDGLCKDKLVRDAFDLYCEMF 216

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+ VTYT+++      G +D+A  +L EM    V  N  T+N L+ G C++ 
Sbjct: 217 EKR---VFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEG 273

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +AK L+  M  +  + PDV +YN L+DG+ L+ ++  A   FN M   G+     SY
Sbjct: 274 KMREAKSLVAVMMKEG-VGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSY 332

Query: 361 TTLMKAFALSSQPKLANKVFD--EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           + ++      S+ K+ ++  D  E +R+  V  D+VA++ L++G C+ G +  A + ++ 
Sbjct: 333 SVMISGL---SKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDE 389

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC--------EVKKEGVNADSD 470
           M + G  PNV TY SL + +  + +  +A+ L K+IK++          +  +G+  D  
Sbjct: 390 MHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGR 449

Query: 471 LPPPLKPDEELL-----------DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
           L    K  ++LL             + +   + + F +AL +++ ME+ G  P+   Y+ 
Sbjct: 450 LTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYET 509

Query: 520 I 520
           I
Sbjct: 510 I 510



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 194/458 (42%), Gaps = 70/458 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P +  ++T++  L  +G              VK    F D  +    K D  +
Sbjct: 110 ILKLGYQPDIITYTTLIRGLCLNGQ-------------VKESLNFHDRLVSQGIKLDHVS 156

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++N    +G+    L+L  ++     +PDV+ YN +I  LC     +       E +
Sbjct: 157 YGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCE-M 215

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            E  +   + T+ SL+  +   G L+ A  ++  M                         
Sbjct: 216 FEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEM------------------------- 250

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                    + K   PN   + TL+ G   EG++ +   ++  M
Sbjct: 251 -------------------------VLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVM 285

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            ++      PD  TY  ++          +A+ V   M ++GV  +  +Y++++ G  + 
Sbjct: 286 MKE---GVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKM 342

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +D+A +L   M ++  I PDVV+Y+ LIDG         AL + +EM  RG  P  I+
Sbjct: 343 KMLDEAMDLFEGMRNENVI-PDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVIT 401

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT+L+ A   S Q   A  +  + ++D  ++ ++  +N+LV+G C+ G + +A+++ + +
Sbjct: 402 YTSLIDALCKSHQVDKAIALLKK-IKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDL 460

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              G   +V TY  + NG+       EAL L  +++++
Sbjct: 461 LMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDK 498



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 30/295 (10%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + +  ++ +LVK         +   M   G+ +N IT NIL+  YC   QI+ A  +
Sbjct: 47  PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             ++      +PD+++Y  LI G  L      +L F + + ++GI    +SY TL+    
Sbjct: 107 FAKIL-KLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLC 165

Query: 369 LSSQP----KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
              Q     +L  K+  E+ R      D+V +N +++G C+  LV +A  +   M E   
Sbjct: 166 KIGQTGPALRLLRKIEGEICRP-----DVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRV 220

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
           +PNV TY SL  G  +  +  +A  L  E+                +   + P+    + 
Sbjct: 221 FPNVVTYTSLIYGFCIVGQLDKAFGLLNEM----------------VLKNVNPNVCTFNT 264

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
           L D   +    R+A  +VA M + G+ P+   Y      +    F  K A +A+ 
Sbjct: 265 LVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYN----ALMDGYFLVKEAGKAKN 315



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 56/336 (16%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC- 297
            +R E +    +++T   ++++      ++ A  V A++ ++G   + ITY  L++G C 
Sbjct: 72  FQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCL 131

Query: 298 ----------------QQLQIDK------------------AKELLREMADDAKIEPDVV 323
                           Q +++D                   A  LLR++  +    PDVV
Sbjct: 132 NGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEI-CRPDVV 190

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            YN +IDG         A   + EM  + + P  ++YT+L+  F +  Q   A  + +EM
Sbjct: 191 MYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEM 250

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +    V  ++  +N LV+G C+ G + EAK ++  M + G  P+V TY +L +G  L ++
Sbjct: 251 VL-KNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKE 309

Query: 444 PGEA---LLLWKEIKERCEV-----------KKEGVNADSDLPPPLK-----PDEELLDA 484
            G+A     +  ++   C+V           K + ++   DL   ++     PD     +
Sbjct: 310 AGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSS 369

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L D   ++     AL+ V  M + G PPN   Y  +
Sbjct: 370 LIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSL 405



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 122/287 (42%), Gaps = 27/287 (9%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK--LCARAS 107
           ++ +  P+   +N +++     GK ++   L   M + G  PDV TYN ++      + +
Sbjct: 251 VLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEA 310

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKII 165
            K   VF +  + +MG+T  + ++  +++       L+ A  + + MR      DV    
Sbjct: 311 GKAKNVFNI--MAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYS 368

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLP-NSINPSSEPPLLPKT---------------- 208
             +D    S          DE+ ++  P N I  +S    L K+                
Sbjct: 369 SLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQ 428

Query: 209 -FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
               N   Y  L+ G   +GR++D  ++   +  +  N    D VTY+ +++ L K    
Sbjct: 429 GIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNV---DVVTYSIMINGLCKESLF 485

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           D A  +L++M   G   + I Y  ++  + ++   DKA++LLREM D
Sbjct: 486 DEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMID 532


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 205/480 (42%), Gaps = 84/480 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+   + T+V  +   GD   V ++ L       +RK  +   VS  KP+   
Sbjct: 203 MVEDGLQPNQITYGTIVDGMCKMGD--TVSALNL-------LRKMEE---VSRIKPNVVI 250

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A+++     G+      LF +M E G  P++ TYN MI     + R      +L  + 
Sbjct: 251 YSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMF 310

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  ++  + TF  L+ A V                                      EG 
Sbjct: 311 ERKMSPDVVTFSVLINALV-------------------------------------KEGK 333

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +E++ ++LP  I              PN+  Y +++ G+  + R+    RM   M 
Sbjct: 334 FFEAEELYNEMLPRGI-------------IPNTITYNSMIDGFSKQNRLDAAERMFYLMA 380

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD +T++ ++     A  +D   ++L EM+R G+ AN ITY  L+ G+CQ  
Sbjct: 381 TK---GCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLG 437

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA---------- 350
            ++ A +LL+EM     + P+VV+ N L+DG         AL  F  M+           
Sbjct: 438 NLNAALDLLQEMISSG-VCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHP 496

Query: 351 -RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              + P   +Y  L+       +   A ++++EM     V  D + +N +++G C+   +
Sbjct: 497 FNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVP-DTITYNSVIDGLCKQSRL 555

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +EA ++ + M   GF P+V T+ +L NG     + G+ L ++      CE+ + G+ A++
Sbjct: 556 DEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVF------CEMGRRGIVANA 609



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 206/476 (43%), Gaps = 50/476 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L+      +  + L  F Q+     KP+V+ +  ++    R  R    V +
Sbjct: 144 PSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVAL 199

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ ++V      GD   A  +++ M E  R    ++    + D   
Sbjct: 200 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIID-GL 258

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   D   +F ++    I             +PN   Y  ++ G+ + GR S+  R+
Sbjct: 259 WKDGRQTDAQNLFSEMQEKGI-------------SPNLFTYNCMINGFCSSGRWSEAQRL 305

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R   +    PD VT++ +++ALVK G    A ++  EM   G+  N ITYN ++ G
Sbjct: 306 L---REMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDG 362

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           + +Q ++D A+ +   MA      PDV++++ILIDG+         +   +EM  RG+  
Sbjct: 363 FSKQNRLDAAERMFYLMATKG-CSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVA 421

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+YTTL+  F        A  +  EM+    V  ++V  N L++G C  G +++A  +
Sbjct: 422 NTITYTTLIHGFCQLGNLNAALDLLQEMISSG-VCPNVVTCNTLLDGLCNNGKLKDALEM 480

Query: 416 IERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG 464
            + M++           N   P+V TY  L  G+    K  EA  L++E+  R       
Sbjct: 481 FKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHR------- 533

Query: 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                     L PD    +++ D   + +   +A ++   M   G  P+   +  +
Sbjct: 534 ---------GLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTL 580



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P+   ++TL+ G   E RVS+ +     + +       P+ + +TT+++ L + G + 
Sbjct: 142 FHPSLVTFSTLLHGLCVEDRVSEALHFFHQICK-------PNVIAFTTLMNGLCREGRVV 194

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +L  M   G+  N+ITY  ++ G C+      A  LLR+M + ++I+P+VV Y+ +
Sbjct: 195 EAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAI 254

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG         A   F+EM+ +GI+P   +Y  ++  F  S +   A ++  EM  + +
Sbjct: 255 IDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMF-ERK 313

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           +  D+V +++L+    + G   EA+ +   M   G  PN  TY S+ +G S
Sbjct: 314 MSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFS 364



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 133/320 (41%), Gaps = 46/320 (14%)

Query: 222 GYMNEGR----VSDTVRMLGAMRRQEDNASHPDHV-----------------TYTTVVSA 260
           GYM   R    V D  ++LG + R E     PD V                 ++T ++  
Sbjct: 65  GYMVRSRPLPCVIDFCKLLGVVVRME----RPDVVISLHRKMEMRRIPCNIYSFTILIKC 120

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
                 +  A     ++T++G   + +T++ LL G C + ++ +A     ++      +P
Sbjct: 121 FCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQIC-----KP 175

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           +V+++  L++G         A+   + M   G+ P +I+Y T++           A  + 
Sbjct: 176 NVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 235

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            +M    R+K ++V ++ +++G  + G   +A+ +   M+E G  PN+ TY  + NG   
Sbjct: 236 RKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCS 295

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
           + +  EA  L +E+ ER                 + PD      L +  V+   F +A E
Sbjct: 296 SGRWSEAQRLLREMFER----------------KMSPDVVTFSVLINALVKEGKFFEAEE 339

Query: 501 IVACMEEHGIPPNKTKYKKI 520
           +   M   GI PN   Y  +
Sbjct: 340 LYNEMLPRGIIPNTITYNSM 359



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 136/309 (44%), Gaps = 37/309 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  YN++++  +   +     ++F  M   G  PDV+T++++I     A R    + +
Sbjct: 351 PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +   G+     T+ +L+  +   G+L  A  ++Q M      VC  +   +      
Sbjct: 411 LHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISS--GVCPNVVTCNTLLDGL 468

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS----- 230
            N G   D  E+F+ +  + ++  +  P       P+ + Y  L+ G +NEG+ S     
Sbjct: 469 CNNGKLKDALEMFKVMQKSKMDLDASHPF--NDVEPDVQTYNILICGLINEGKFSEAEEL 526

Query: 231 -----------DTV---RMLGAMRRQE--DNASH-----------PDHVTYTTVVSALVK 263
                      DT+    ++  + +Q   D A+            PD VT+TT+++   K
Sbjct: 527 YEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCK 586

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +    +V  EM R G+ AN ITY  L+ G+CQ   I+ A ++ +EM     + PD +
Sbjct: 587 VGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG-VYPDTI 645

Query: 324 SYNILIDGF 332
           +   ++ G 
Sbjct: 646 TIRNMLTGL 654


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 137/568 (24%), Positives = 229/568 (40%), Gaps = 123/568 (21%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP  ++ + ++ RL+ SG+              + VRKF +  I +   P    YN +++
Sbjct: 192 LPKARSCNFLLHRLSKSGNG-------------QLVRKFFNDMIGAGIAPSVFTYNVMID 238

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                G  +   +LF QM E G  PDV+TYN +I    +      +  +   + ++G   
Sbjct: 239 YLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVP 298

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+  L+  Y                       CK                       
Sbjct: 299 DIITYNGLINCY-----------------------CK----------------------- 312

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
            FEK+ P +    SE  +      PN   Y+TL+  +  EG +   +++L  MRR     
Sbjct: 313 -FEKM-PRAFEYFSE--MKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRR---TG 365

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P+  TYT+++ A  KAG++  A ++L +M + GV  N +TY  LL G C+  ++ +A+
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGAL--------------------- 342
           E+ R M  D  I P+   Y  L+ G+I    ++D+   L                     
Sbjct: 426 EVFRSMLKDG-ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 484

Query: 343 -----------TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                          EM++RGI+   +  TT++ A+  + +   A   F EM +D  V+ 
Sbjct: 485 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM-QDVGVEA 543

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            IV + +L++G C  G+VE A     RM   G  PNVA Y SL +G+        A  L+
Sbjct: 544 TIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLF 603

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
            E++ R                 + PD     AL D  ++    ++AL +++ M E  I 
Sbjct: 604 DEMQCR----------------GMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIE 647

Query: 512 PNKTKYKKIYVEMHSRMFTSKHASQARQ 539
            +      +Y  + S         QAR+
Sbjct: 648 FD----LHVYTSLVSGFSQCGELHQARK 671



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 184/402 (45%), Gaps = 20/402 (4%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++N      K  +  + F +M   G KP+V+TY+ +I    +       + +
Sbjct: 298 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKL 357

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +   G+     T+ SL+ A    G+L  A  ++  M +    +  I+    L D   
Sbjct: 358 LXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKL-NIVTYTALLDGLC 416

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +  G   + +EVF  +L + I             +PN ++YT L+ GY+   R+ D +++
Sbjct: 417 K-AGRMIEAEEVFRSMLKDGI-------------SPNQQVYTALVHGYIKAERMEDAMKI 462

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M   E N   PD + Y +++        ++  + +L EM   G+ AN +    ++  
Sbjct: 463 LKQM--TECNIK-PDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 519

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +  +   A    +EM  D  +E  +V+Y +LIDG         A+ +F  M + G+ P
Sbjct: 520 YFKAGKSSDALNFFQEM-QDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQP 578

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
               YT+L+     ++  + A K+FDEM +   +  DI A+  L++G  + G ++EA  +
Sbjct: 579 NVAVYTSLIDGLCXNNCIESAKKLFDEM-QCRGMTPDITAFTALIDGNLKHGNLQEALVL 637

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           I RM E     ++  Y SL +G S   +  +A   + E+ E+
Sbjct: 638 ISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEK 679



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 156/366 (42%), Gaps = 21/366 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y ++++A    G   +  +L + M + G K +++TY  ++    +A R      V
Sbjct: 368 PNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEV 427

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +L+ GI+     + +LV  Y+    +E A  I++ M E     C I  + DL  Y S
Sbjct: 428 FRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE-----CNI--KPDLILYGS 480

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G          KL+   +          +  + N  I TT++  Y   G+ SD +  
Sbjct: 481 IIWGHCSQRKLEETKLILEEMKS--------RGISANPVISTTIIDAYFKAGKSSDALNF 532

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M   +D       VTY  ++  L +AG ++ A      M  +G+  N   Y  L+ G
Sbjct: 533 FQEM---QDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDG 589

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C    I+ AK+L  EM     + PD+ ++  LIDG +   +   AL   + M    I  
Sbjct: 590 LCXNNCIESAKKLFDEMQCRG-MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF 648

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE--EAK 413
               YT+L+  F+   +   A K F+EM+    +  +++   +L E Y R  L E  E K
Sbjct: 649 DLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELK 708

Query: 414 RIIERM 419
             +ERM
Sbjct: 709 NEMERM 714



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 18/233 (7%)

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            +++L   + +   +++A E    M +  +  P   S N L+       +      FFN+
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRN-FRTLPKARSCNFLLHRLSKSGNGQLVRKFFND 220

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M   GIAP+  +Y  ++         + + ++F +M R+  +  D+V +N L++GY ++G
Sbjct: 221 MIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQM-REMGLSPDVVTYNSLIDGYGKVG 279

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            +EE   +   MK+ G  P++ TY  L N      K   A   + E+K            
Sbjct: 280 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN---------- 329

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  LKP+      L D   +    + A++++  M   G+ PN+  Y  +
Sbjct: 330 ------GLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSL 376


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 209/504 (41%), Gaps = 114/504 (22%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P   + N++L+     G+  K L +++QM   G  PD+ +Y +M+   C          F
Sbjct: 219 PSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNF 278

Query: 115 VLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           V E    M  + C   + T+ SL+  YV  GD+  A+ ++  M E               
Sbjct: 279 VKE----MERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSE--------------- 319

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                              K    NSR YT L+KGY   G++  
Sbjct: 320 -----------------------------------KGIPENSRTYTLLIKGYCKRGQMEQ 344

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             +++G M   E N    +HV Y  ++ A   AG +D A ++   M ++G+  N +  N 
Sbjct: 345 AEKLIGCM--MEKNLFVDEHV-YGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNS 401

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI----------LIDDSAG- 340
           L+ GYC+   ++KA E+L  M  D  ++PD   YN L+DGF           L D+    
Sbjct: 402 LINGYCKLGHVNKAAEVLVSM-KDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNK 460

Query: 341 ------------------------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
                                   AL  +N M  RG+AP +++Y TL+ AF        A
Sbjct: 461 GVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRA 520

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             ++ + L     K  I  +N ++ G+C+M  + +A+ I  +MKE GF P+  TY +L +
Sbjct: 521 MMIWKDALSKGFTK-SITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLID 579

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G        EAL L K++ ER     +G+++ +          E+ ++L     R+   +
Sbjct: 580 GYCKVGNLVEALKL-KDMSER-----DGISSST----------EMYNSLITGVFRSEELQ 623

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
           K   ++A M+   + PN   Y  +
Sbjct: 624 KLNGLLAEMKNRELSPNVVTYGSL 647



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/454 (20%), Positives = 184/454 (40%), Gaps = 64/454 (14%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
              YN +L    ++G  +  L +++ MH+ G  P+ +TY  ++    +       + + +
Sbjct: 466 VVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWK 525

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE---------------GRRDVC 162
             L  G T  +T + +++  +     L  A+ I   M+E               G   V 
Sbjct: 526 DALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVG 585

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL-------LPKTFAPNSRI 215
            ++  L L+D S E +G      E++  L+           L         +  +PN   
Sbjct: 586 NLVEALKLKDMS-ERDGISSST-EMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVT 643

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y +L+ G+ ++G +    +   A  +  D    P+ +  + +VS+L + G +D A  +L 
Sbjct: 644 YGSLIAGWCDKGMMD---KAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILH 700

Query: 276 EMTRI----------------------------------GVP-ANRITYNILLKGYCQQL 300
           ++  I                                   +P +N I YNI + G C+  
Sbjct: 701 QIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSK 760

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ID  + +L ++       PD  +Y  LI     +     A    ++M   G+ P  + Y
Sbjct: 761 NIDDVRRILSDLLLKG-FCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVY 819

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+     S     A ++F+++ R   +   +V +N L++GYC+ G   EA  + ++M+
Sbjct: 820 NALINGLCKSGNLDRARRLFNKLARKG-LSPTVVTYNTLIDGYCKGGRTTEALELKDKMR 878

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           E G  P+  TY +L +G+ +  K  +++ L  E+
Sbjct: 879 EEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEM 912



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/491 (20%), Positives = 209/491 (42%), Gaps = 68/491 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP + +++ +V+   A   +G V+    F+ V +  R   +P++V+        
Sbjct: 247 MIALGILPDIFSYTIMVN---AYCKEGRVDEA--FNFVKEMERSCCEPNVVT-------- 293

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKH---LLVFVL 116
           YN++++   +LG      ++   M E G   +  TY ++IK  C R   +    L+  ++
Sbjct: 294 YNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMM 353

Query: 117 ER-------------------------------ILEMGITLCMTTFQSLVAAYVGFGDLE 145
           E+                               +L++G+ +      SL+  Y   G + 
Sbjct: 354 EKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVN 413

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            A  ++ +M++          + D   Y++  +G    +D +    L + ++        
Sbjct: 414 KAAEVLVSMKDWN-------LKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMH-------- 458

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            K        Y TL+K   + G V   + +   M ++      P+ VTY T++ A  K G
Sbjct: 459 NKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKR---GVAPNEVTYCTLLDAFFKVG 515

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           + DRA  +  +    G   +   YN ++ G+C+  ++ +A+E+  +M  +    PD ++Y
Sbjct: 516 TFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKM-KELGFPPDEITY 574

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             LIDG+  + +   AL   +     GI+ +   Y +L+     S + +  N +  EM +
Sbjct: 575 RTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEM-K 633

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           +  +  ++V +  L+ G+C  G++++A     +M + G  PN+     + + +    K  
Sbjct: 634 NRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKID 693

Query: 446 EALLLWKEIKE 456
           EA L+  +I +
Sbjct: 694 EANLILHQIAD 704



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 171/400 (42%), Gaps = 40/400 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P    + T++      G+   VE++KL D+        S+ D +S S   T  YN++
Sbjct: 566 GFPPDEITYRTLIDGYCKVGN--LVEALKLKDM--------SERDGISSS---TEMYNSL 612

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +       + +K   L  +M      P+V+TY  +I                 ++++ GI
Sbjct: 613 ITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGI 672

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              +     +V++    G ++ A  I+  + +        I  +    +S E    D   
Sbjct: 673 APNIIIGSKIVSSLYRHGKIDEANLILHQIAD--------IDPIAAHAHSVELPKSDLRH 724

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
            E  +K++ +    +   P+       N+ +Y   + G      + D  R+L  +  +  
Sbjct: 725 LET-QKIVDSFGKKAMSIPI------SNNIVYNIAITGLCKSKNIDDVRRILSDLLLK-- 775

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD+ TY +++ A    G ++ A  +  +M   G+  N + YN L+ G C+   +D+
Sbjct: 776 -GFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDR 834

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A+ L  ++A    + P VV+YN LIDG+     +  AL   ++MR  GI P+ I+Y+TL+
Sbjct: 835 ARRLFNKLARKG-LSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLI 893

Query: 365 KAFALSSQPKLANKVFDEMLR--------DPRVKVDIVAW 396
               +  + + +  + +EM++        DP V    V W
Sbjct: 894 HGLYMEGKSEQSVGLLNEMMKAGKGSSVMDPLVARAYVKW 933



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 46/243 (18%)

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILI-----------------DGFILIDDSAGA 341
           +L  D + E  +  +   K  PDV SY  ++                 +  +L  ++  A
Sbjct: 109 RLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNYIA 168

Query: 342 LTFFNEM----RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              ++E+    R    +PT   +  ++K FA     K A  VFD M +  RV   + + N
Sbjct: 169 SAVWDELVSVYREFSFSPT--VFDMILKVFAEKGMTKFALCVFDNMGKCGRVP-SLRSCN 225

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            L+    + G   +A  + E+M   G  P++ +Y  + N      +  EA    KE++  
Sbjct: 226 SLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERS 285

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLD---ALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           C              P +     L+D   +L D+C        A +++A M E GIP N 
Sbjct: 286 C------------CEPNVVTYNSLIDGYVSLGDVC-------GAKKVLALMSEKGIPENS 326

Query: 515 TKY 517
             Y
Sbjct: 327 RTY 329



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G +P++  ++ +++ L  SG+             + R R+  +        P    
Sbjct: 807 MINAGLVPNIVVYNALINGLCKSGN-------------LDRARRLFNKLARKGLSPTVVT 853

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           YN +++     G+  + L+L D+M E G  P  +TY+ +I
Sbjct: 854 YNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLI 893


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/528 (23%), Positives = 220/528 (41%), Gaps = 95/528 (17%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF--- 114
           +A ++ V+ +C+ L   +K L + D     G  P VL+YN ++    R  +   ++F   
Sbjct: 132 SAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKP--VIFAEK 189

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V   ++  G++L + ++  L+  +   G+LE+     + M   R                
Sbjct: 190 VYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNR---------------- 233

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                            LPN +                   Y T++  Y    R+ +  +
Sbjct: 234 ----------------CLPNVVT------------------YNTVIGAYCKLKRIDEAFK 259

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L +M  +      P+ +TY  V++ L + G ++    VLAEM R G   + +TYN L+ 
Sbjct: 260 LLRSMGLE---GLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVN 316

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+     +A  L  EM  +  + PDVV+Y  LI+      +   A+ FF++M  RG+ 
Sbjct: 317 GYCKVGNFHQALVLHSEMLRNG-LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLR 375

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YT+L+  F+       A +++DEM+R       IV +N L+ G+C  G +EEA  
Sbjct: 376 PNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSG-FPPTIVTYNALLNGHCVSGRMEEAIG 434

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------C 458
           ++  M+  G  P+V +Y ++  G    ++   A  +  E+ E+                C
Sbjct: 435 LLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLC 494

Query: 459 EVKKEGVNADSD-----LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           E ++  +N   D     L   L PDE    +L +   +     +AL +   M + G  P+
Sbjct: 495 EQRR--LNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPD 552

Query: 514 KTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNS 561
              Y  +   ++            +Q R RE KR      +   +PN 
Sbjct: 553 TVTYNVLINGLN------------KQARTREAKRLLLKLFYDESIPNG 588



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 210/469 (44%), Gaps = 48/469 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+  LP+V  ++TV+         G    +K  D   K +R       +   +P+   
Sbjct: 229 MERNRCLPNVVTYNTVI---------GAYCKLKRIDEAFKLLRSMG----LEGLEPNLLT 275

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N    +G+ ++   +  +M   G  PD +TYN ++    +    H  + +   +L
Sbjct: 276 YNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEML 335

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENEG 179
             G+   + T+ SL+      G+L  A      M   G R        L +  +S +  G
Sbjct: 336 RNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSL-INGFSQK--G 392

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             D+   ++++++ +              F P    Y  L+ G+   GR+ + +   G +
Sbjct: 393 FMDEAYRIWDEMIRSG-------------FPPTIVTYNALLNGHCVSGRMEEAI---GLL 436

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R  E     PD V+Y+T+++   +   +DRA Q+ AEM   GV  + ITY+ L++G C+Q
Sbjct: 437 RGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQ 496

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++++A +L +EM + + + PD  +Y  LI+G+    D   AL   +EM  +G  P  ++
Sbjct: 497 RRLNEACDLFQEMLNKSLL-PDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRV--------------KVDIVAWNMLVEGYCR 405
           Y  L+      ++ + A ++  ++  D  +               ++  +   L++G+C 
Sbjct: 556 YNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCM 615

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            GL+ EA ++ E M +    PN A Y  + +G        +A  L+KE+
Sbjct: 616 KGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEM 664



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 98/472 (20%), Positives = 193/472 (40%), Gaps = 104/472 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR+G  P V  ++++++ +  +G+             + R  +F D   V   +P+   
Sbjct: 334 MLRNGLPPDVVTYTSLINTMCKAGN-------------LNRAMEFFDQMHVRGLRPNGVT 380

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y +++N  +  G   +  +++D+M   G  P ++TYN ++     + R    + +L  + 
Sbjct: 381 YTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGME 440

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-------------------ETIVQAMREGRR-- 159
             G++  + ++ +++A +  + +L+ A                    +++Q + E RR  
Sbjct: 441 GKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLN 500

Query: 160 DVCKIIREL-------DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
           + C + +E+       D   Y+S   G   + D      L  ++N   E  ++ K F P+
Sbjct: 501 EACDLFQEMLNKSLLPDEFTYTSLINGYCKEGD------LNEALNLHDE--MIKKGFLPD 552

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV-----------VSAL 261
           +  Y  L+ G   + R  +  R+L  +   E   S P+ +TY T+           V AL
Sbjct: 553 TVTYNVLINGLNKQARTREAKRLLLKLFYDE---SIPNGITYDTLIESCSDIEFKSVVAL 609

Query: 262 VKA----GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           +K     G M+ A QV   M +     N   YN+++ G+C+   + KA +L +EM D   
Sbjct: 610 IKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVD--- 666

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
                        GFI                     P  ++   L+KA       +  N
Sbjct: 667 ------------FGFI---------------------PHTVTIIALVKALYSEGMDEQLN 693

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
            V  ++LR  ++  D      LV+   + G ++    ++  M ++GF P+ A
Sbjct: 694 LVIRDILRSCKLS-DAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLPSGA 744



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 40/258 (15%)

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG-----------------ALTFFNE 347
           A+ L +++A+++  E     +  L D + + + S+                  AL   + 
Sbjct: 98  AQNLAQDLAENSVDEKGNYFFQCLKDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDL 157

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKL-ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            +  G  P  +SY  ++ +     +P + A KV+ EM+    V +++ ++N+L+ G+C  
Sbjct: 158 AKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASG-VSLNVFSYNILIRGFCAA 216

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE------------- 453
           G +E   R  E M+ N   PNV TY ++       ++  EA  L +              
Sbjct: 217 GNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTY 276

Query: 454 ---IKERCEVKK----EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
              I   C V +     GV A+ D      PD    + L +   +   F +AL + + M 
Sbjct: 277 NMVINGLCRVGRIEETSGVLAEMD-RKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEML 335

Query: 507 EHGIPPNKTKYKKIYVEM 524
            +G+PP+   Y  +   M
Sbjct: 336 RNGLPPDVVTYTSLINTM 353


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 182/387 (47%), Gaps = 22/387 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLV 113
           +P+   YN V+    + G+ +  L +  +M E G   P+  TY  +I    +  R    V
Sbjct: 511 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 570

Query: 114 FVLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            V + +L  G +      + +L+  Y   G L+ A      M E  R V   +   +L  
Sbjct: 571 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVE--RGVAMTVATYNLLV 628

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           ++   +G   +  E+ E++               K  AP+   Y  L+ G+  EG V   
Sbjct: 629 HALFMDGRGTEAYELVEEMGG-------------KGLAPDVFTYNILINGHCKEGNVKKA 675

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M R+   A+    VTYT ++ AL K G +    ++  E  R G+  + + YN L
Sbjct: 676 LEIFENMSRRGVRATV---VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 732

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +     ID+A E++ EM +  +I PD V+YN L+ G  L+     A    +EM  RG
Sbjct: 733 INSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 791

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P  ++Y TL+  +++    K A ++ +EM+ +      ++ +N L++G C+ G  ++A
Sbjct: 792 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDA 850

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + +++ M ENG  P+ +TY SL  G++
Sbjct: 851 ENMVKEMVENGITPDDSTYISLIEGLT 877



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 163/390 (41%), Gaps = 89/390 (22%)

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P+    LL +   PN+  Y T++ G+ + GRV   + ++  MR  E     P+  TY TV
Sbjct: 499 PARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMR--ERGGIAPNQYTYGTV 556

Query: 258 VSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQID------------- 303
           +S   K G +D A +V  EM   G V    + YN L+ GYC Q ++D             
Sbjct: 557 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERG 616

Query: 304 ----------------------KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
                                 +A EL+ EM     + PDV +YNILI+G     +   A
Sbjct: 617 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG-LAPDVFTYNILINGHCKEGNVKKA 675

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---------------- 385
           L  F  M  RG+  T ++YT L+ A +   Q +  +K+FDE +R                
Sbjct: 676 LEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 735

Query: 386 ------------------DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                               R+  D V +N L+ G C +G V+EA+++I+ M E G  P+
Sbjct: 736 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 795

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + TY +L +G S+     +AL +      R E+  +G N          P     +AL  
Sbjct: 796 LVTYNTLISGYSMKGDVKDALRI------RNEMMNKGFN----------PTLLTYNALIQ 839

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              +      A  +V  M E+GI P+ + Y
Sbjct: 840 GLCKNGQGDDAENMVKEMVENGITPDDSTY 869



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 157/365 (43%), Gaps = 31/365 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P+   + TV+S     G     E+VK+FD ++ +           + KP+   YN
Sbjct: 543 RGGIAPNQYTYGTVISGWCKVGRVD--EAVKVFDEMLTK----------GEVKPEAVMYN 590

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A++    + GK    L   D+M E G    V TYN+++       R      ++E +   
Sbjct: 591 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 650

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+   + T+  L+  +   G+++ A  I + M   RR V   +       Y+   +G   
Sbjct: 651 GLAPDVFTYNILINGHCKEGNVKKALEIFENM--SRRGVRATVVTYTALIYALSKKGQVQ 708

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           + D++F++ +   I P             +  +Y  L+  +   G +     ++G M ++
Sbjct: 709 ETDKLFDEAVRRGIRP-------------DLVLYNALINSHSTSGNIDRAFEIMGEMEKK 755

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD VTY T++  L   G +D AR+++ EMT  G+  + +TYN L+ GY  +  +
Sbjct: 756 R---IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 812

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A  +  EM +     P +++YN LI G         A     EM   GI P   +Y +
Sbjct: 813 KDALRIRNEMMNKG-FNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 871

Query: 363 LMKAF 367
           L++  
Sbjct: 872 LIEGL 876



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           T  +  L+ A     A  + A+M R+ +P    T+NI+L+  C   +  +A ELLR+M  
Sbjct: 452 TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP- 510

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQP 373
                P+ V+YN +I GF        AL    EMR RG IAP + +Y T++  +    + 
Sbjct: 511 ----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRV 566

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             A KVFDEML    VK + V +N L+ GYC  G ++ A    +RM E G    VATY  
Sbjct: 567 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 626

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L + + +  +  EA  L +E+  +                 L PD    + L +   +  
Sbjct: 627 LVHALFMDGRGTEAYELVEEMGGKG----------------LAPDVFTYNILINGHCKEG 670

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKI 520
             +KALEI   M   G+      Y  +
Sbjct: 671 NVKKALEIFENMSRRGVRATVVTYTAL 697


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 182/387 (47%), Gaps = 22/387 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLV 113
           +P+   YN V+    + G+ +  L +  +M E G   P+  TY  +I    +  R    V
Sbjct: 516 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 575

Query: 114 FVLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            V + +L  G +      + +L+  Y   G L+ A      M E  R V   +   +L  
Sbjct: 576 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVE--RGVAMTVATYNLLV 633

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           ++   +G   +  E+ E++               K  AP+   Y  L+ G+  EG V   
Sbjct: 634 HALFMDGRGTEAYELVEEMGG-------------KGLAPDVFTYNILINGHCKEGNVKKA 680

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M R+   A+    VTYT ++ AL K G +    ++  E  R G+  + + YN L
Sbjct: 681 LEIFENMSRRGVRATV---VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 737

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +     ID+A E++ EM +  +I PD V+YN L+ G  L+     A    +EM  RG
Sbjct: 738 INSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 796

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P  ++Y TL+  +++    K A ++ +EM+ +      ++ +N L++G C+ G  ++A
Sbjct: 797 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDA 855

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + +++ M ENG  P+ +TY SL  G++
Sbjct: 856 ENMVKEMVENGITPDDSTYISLIEGLT 882



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 163/390 (41%), Gaps = 89/390 (22%)

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P+    LL +   PN+  Y T++ G+ + GRV   + ++  MR  E     P+  TY TV
Sbjct: 504 PARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMR--ERGGIAPNQYTYGTV 561

Query: 258 VSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQID------------- 303
           +S   K G +D A +V  EM   G V    + YN L+ GYC Q ++D             
Sbjct: 562 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERG 621

Query: 304 ----------------------KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
                                 +A EL+ EM     + PDV +YNILI+G     +   A
Sbjct: 622 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG-LAPDVFTYNILINGHCKEGNVKKA 680

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---------------- 385
           L  F  M  RG+  T ++YT L+ A +   Q +  +K+FDE +R                
Sbjct: 681 LEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 740

Query: 386 ------------------DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                               R+  D V +N L+ G C +G V+EA+++I+ M E G  P+
Sbjct: 741 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 800

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + TY +L +G S+     +AL +      R E+  +G N          P     +AL  
Sbjct: 801 LVTYNTLISGYSMKGDVKDALRI------RNEMMNKGFN----------PTLLTYNALIQ 844

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              +      A  +V  M E+GI P+ + Y
Sbjct: 845 GLCKNGQGDDAENMVKEMVENGITPDDSTY 874



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 157/366 (42%), Gaps = 31/366 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P+   + TV+S     G     E+VK+FD ++ +           + KP+   YN
Sbjct: 548 RGGIAPNQYTYGTVISGWCKVGRVD--EAVKVFDEMLTK----------GEVKPEAVMYN 595

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A++    + GK    L   D+M E G    V TYN+++       R      ++E +   
Sbjct: 596 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 655

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+   + T+  L+  +   G+++ A  I + M   RR V   +       Y+   +G   
Sbjct: 656 GLAPDVFTYNILINGHCKEGNVKKALEIFENM--SRRGVRATVVTYTALIYALSKKGQVQ 713

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           + D++F++ +   I P             +  +Y  L+  +   G +     ++G M ++
Sbjct: 714 ETDKLFDEAVRRGIRP-------------DLVLYNALINSHSTSGNIDRAFEIMGEMEKK 760

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD VTY T++  L   G +D AR+++ EMT  G+  + +TYN L+ GY  +  +
Sbjct: 761 R---IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 817

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A  +  EM +     P +++YN LI G         A     EM   GI P   +Y +
Sbjct: 818 KDALRIRNEMMNKG-FNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 876

Query: 363 LMKAFA 368
           L++   
Sbjct: 877 LIEGLT 882



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           T  +  L+ A     A  + A+M R+ +P    T+NI+L+  C   +  +A ELLR+M  
Sbjct: 457 TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP- 515

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQP 373
                P+ V+YN +I GF        AL    EMR RG IAP + +Y T++  +    + 
Sbjct: 516 ----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRV 571

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             A KVFDEML    VK + V +N L+ GYC  G ++ A    +RM E G    VATY  
Sbjct: 572 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 631

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L + + +  +  EA  L +E+  +                 L PD    + L +   +  
Sbjct: 632 LVHALFMDGRGTEAYELVEEMGGKG----------------LAPDVFTYNILINGHCKEG 675

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKI 520
             +KALEI   M   G+      Y  +
Sbjct: 676 NVKKALEIFENMSRRGVRATVVTYTAL 702


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 216/528 (40%), Gaps = 83/528 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC-ARASRKHLLV 113
           PD  AY+ V++   N G+  K   LF +M   G KPDV+TYN++I  LC ARA  K  L 
Sbjct: 263 PDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAEL- 321

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL ++   G      T+  ++  Y   G L+ A  + + M+  +R +   I   +    
Sbjct: 322 -VLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMK--KRGLIPNIVTCNSFLA 378

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPS--SEPPLL--------------------PKTFAP 211
           S    G   +  E F+ +      P   S   LL                        A 
Sbjct: 379 SLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAA 438

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N  ++T L+  Y   G V D + +   M++Q      PD VTY+TV+S   + G +  A 
Sbjct: 439 NCHVFTILIHAYAKRGMVDDAMLIFTEMQQQ---GVSPDVVTYSTVISTFSRMGRLTDAM 495

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM------------------- 312
           +   +M   G+  N   Y+ +++G+C    + KAKEL+ EM                   
Sbjct: 496 EKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINS 555

Query: 313 ----------------ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                           A D    P V+++N LIDG+ L+     A    + M   G+ P 
Sbjct: 556 LCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPD 615

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y TL+  +  + +      +F EM R   VK + V + +++ G  R G    A++  
Sbjct: 616 IVTYNTLLDGYFKNGRINDGLTLFREMQRKG-VKPNTVTYGIMLAGLFRAGRTVAARKKF 674

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
             M E+G    V+ YG +  G+       EA++L++++                    +K
Sbjct: 675 HEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTM----------------NVK 718

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
               +L+ + +   +     +A E+ A +   G+ PN++ Y  + + +
Sbjct: 719 FSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINL 766



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 191/474 (40%), Gaps = 76/474 (16%)

Query: 66  NACANLGKPKKFLQLFDQM--HEFG---AKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +AC   G P   L LF+++   E G   A P   TYN+++  C RA R  L + +   IL
Sbjct: 126 SACITDG-PALALALFNRVCREEAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCIL 184

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+ +                D   A T+++ +    R                     
Sbjct: 185 RTGLKM----------------DQITANTLLKCLCYANRT-------------------- 208

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               +E    LL    +  SE   +P     N+  Y+ ++K   +       + +L  M 
Sbjct: 209 ----EEAVNVLL----HRMSELGCVP-----NAVSYSIVLKALCDNSMSQRALDLLQMMA 255

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q   A  PD V Y+TV+      G   +A  +  EMTR GV  + +TYN+++   C+  
Sbjct: 256 KQ-GGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKAR 314

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +DKA+ +LR+M  D   +PD V+Y+ +I G+  +     A   F EM+ RG+ P  ++ 
Sbjct: 315 AMDKAELVLRQMTTDGA-QPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTC 373

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            + + +     + K A + FD M      K DI ++  L+ GY   G   +   +   MK
Sbjct: 374 NSFLASLCKHGRSKEAAEFFDSMTAKGH-KPDIFSYCTLLHGYASEGCFADMIGLFNSMK 432

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
            NG   N   +  L +  +      +A+L++ E+++      +GV+          PD  
Sbjct: 433 SNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQ------QGVS----------PDVV 476

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRMFTSK 532
               +     R      A+E    M   GI PN   Y  I     MH  +  +K
Sbjct: 477 TYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK 530



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/513 (21%), Positives = 213/513 (41%), Gaps = 99/513 (19%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS--------------- 52
           P V A+STV+      G+ G  ++  LF    +  R+   PD+V+               
Sbjct: 263 PDVVAYSTVIHGFFNEGETG--KACSLFH---EMTRQGVKPDVVTYNLIIDALCKARAMD 317

Query: 53  ------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
                        ++PDT  Y+ +++  A LG+ K+  ++F +M + G  P+++T N  +
Sbjct: 318 KAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFL 377

Query: 101 -KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GR 158
             LC     K    F  + +   G    + ++ +L+  Y   G       +  +M+  G 
Sbjct: 378 ASLCKHGRSKEAAEF-FDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGI 436

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP---------------- 202
              C +   L +  Y+    G  DD   +F ++    ++P                    
Sbjct: 437 AANCHVFTIL-IHAYA--KRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTD 493

Query: 203 ------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                  ++ +   PN+ +Y+++++G+   G +     ++  M  +      PD V +++
Sbjct: 494 AMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINK--GIPRPDIVFFSS 551

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           V+++L K G +  A  +    T IG     IT+N L+ GYC   ++DKA ++L  M +  
Sbjct: 552 VINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAM-EVV 610

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            +EPD+V+YN L+DG+         LT F EM+ +G+ P  ++Y  ++     + +   A
Sbjct: 611 GVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAA 670

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCR-------------MGLV-------------- 409
            K F EM+ +    V +  + +++ G CR             +G +              
Sbjct: 671 RKKFHEMI-ESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMIN 729

Query: 410 --------EEAKRIIERMKENGFYPNVATYGSL 434
                   EEAK +   +  +G  PN +TYG +
Sbjct: 730 AMYKVQRKEEAKELFATISASGLLPNESTYGVM 762



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 20/235 (8%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           K  D   V   +PD   YN +L+     G+    L LF +M   G KP+ +TY +M+   
Sbjct: 602 KILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGL 661

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVC 162
            RA R          ++E G T+ ++ +  ++    G      A E I+   + G  +V 
Sbjct: 662 FRAGRTVAARKKFHEMIESGTTVTVSIYGIILG---GLCRNNCADEAIILFQKLGTMNVK 718

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
             I  L+    +       ++  E+F  +        S   LL     PN   Y  ++  
Sbjct: 719 FSITILNTMINAMYKVQRKEEAKELFATI--------SASGLL-----PNESTYGVMIIN 765

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            + +G V D   M  +M   E +   P       ++  L++ G + +A   L+++
Sbjct: 766 LLKDGGVEDANNMFSSM---EKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKV 817


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 21/333 (6%)

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F +L  NS++ S    +L K + P +  + TL+KG   +G +   +     +  Q     
Sbjct: 106 FSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQ---GF 162

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           H D V+Y T+++ L K G +  A Q+L  +    V  N + YN+++   C+   ++ A +
Sbjct: 163 HLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFD 222

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           L  +M    +I PDV +YN LI GF  +     A+  FN+M+   I P   ++  L+  F
Sbjct: 223 LYSQMVA-KRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGF 281

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               +   A  V   M++D  +K D+V +N L++GYC +  V +AK I + M   G   N
Sbjct: 282 CKEGKVNDAKVVLAIMMKDD-IKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIAN 340

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V  Y ++ NG    +   EA+ L++E++ R             + P +     L+D L  
Sbjct: 341 VQIYTTMVNGFCKIKMVDEAINLFEEMRCR------------KIIPNVVTYSSLIDGL-- 386

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            C     F  AL++V  M + G PPN   Y  I
Sbjct: 387 -CKLGRIFY-ALKLVDEMHDRGQPPNIVTYSSI 417



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/474 (22%), Positives = 218/474 (45%), Gaps = 38/474 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           + D   +N ++N  + LG       +F ++ + G  P  +T+N +IK LC +      L 
Sbjct: 93  ESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALH 152

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  ++++  G  L   ++ +L+      G +  A  +++ +         ++  + +++ 
Sbjct: 153 F-HDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNM 211

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                           KL+ ++ +  S+  ++ K   P+   Y  L+ G+    +++  +
Sbjct: 212 CK-------------AKLVNDAFDLYSQ--MVAKRICPDVFTYNALISGFSAVSKLNYAI 256

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M+++  N   P+  T+  +V    K G ++ A+ VLA M +  +  + +TYN L+
Sbjct: 257 DLFNKMKKENIN---PNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLM 313

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GYC   +++KAK++   MA    I  +V  Y  +++GF  I     A+  F EMR R I
Sbjct: 314 DGYCSINKVNKAKDIFDSMASGGVI-ANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKI 372

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++Y++L+       +   A K+ DEM  D     +IV ++ +++  C+   V++A 
Sbjct: 373 IPNVVTYSSLIDGLCKLGRIFYALKLVDEM-HDRGQPPNIVTYSSILDALCKNHHVDKAI 431

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            ++  +K+ G  P++ TY  L  G+  + +  +A    + + E   VK  G N D     
Sbjct: 432 ALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDA----QNVFEDLLVK--GYNLD----- 480

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
            +     ++    D      FF KAL +++ ME++G  PN   Y+ + + +  +
Sbjct: 481 -VYAYTVMIQGFCD----KGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEK 529



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 151/329 (45%), Gaps = 19/329 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YNA+++  + + K    + LF++M +    P+V T+N+++    +  + +    V
Sbjct: 234 PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVV 293

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +++  I   + T+ SL+  Y     +  A+ I  +M  G      +I  + +  Y++
Sbjct: 294 LAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASG-----GVIANVQI--YTT 346

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G          K++  +IN   E  +  +   PN   Y++L+ G    GR+   +++
Sbjct: 347 MVNG------FCKIKMVDEAINLFEE--MRCRKIIPNVVTYSSLIDGLCKLGRIFYALKL 398

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M    D    P+ VTY++++ AL K   +D+A  +L  +   G+  +  TY IL+KG
Sbjct: 399 VDEM---HDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKG 455

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            CQ  +++ A+ +  ++        DV +Y ++I GF        AL   ++M   G  P
Sbjct: 456 LCQSGRLEDAQNVFEDLLVKG-YNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIP 514

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEML 384
              +Y  ++ +     +   A K+  EM+
Sbjct: 515 NAKTYELVILSLFEKDENDTAEKLLREMI 543



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 131/313 (41%), Gaps = 41/313 (13%)

Query: 227 GRVSDTVRMLGAMRRQEDNASH---------------PDHVTYTTVVSALVKAGSMDRAR 271
           G    ++R+   +  ++D  ++               P    +  ++S+LVKA     A 
Sbjct: 22  GLFPSSIRLFSQLHHKQDEENNLISSFNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTAL 81

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +  +M   G+ ++  T+NIL+  +  QL ++     +          P  +++N LI G
Sbjct: 82  SLHQQMELNGIESDFFTFNILINCF-SQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKG 140

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA----LSSQPKLANKVFDEMLRDP 387
             L      AL F +++ A+G    ++SY TL+        +++  +L  +V D  L  P
Sbjct: 141 LCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRV-DGKLVQP 199

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
                 V +NM+++  C+  LV +A  +  +M      P+V TY +L +G S   K   A
Sbjct: 200 NA----VMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYA 255

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           + L+ ++      KKE +N          P+    + L D   +      A  ++A M +
Sbjct: 256 IDLFNKM------KKENIN----------PNVYTFNILVDGFCKEGKVNDAKVVLAIMMK 299

Query: 508 HGIPPNKTKYKKI 520
             I P+   Y  +
Sbjct: 300 DDIKPDVVTYNSL 312



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 119/301 (39%), Gaps = 54/301 (17%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D KPD   YN++++   ++ K  K   +FD M   G   +V  Y  M+            
Sbjct: 301 DIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVN----------- 349

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
                                      GF  +++ +  +    E R   C+ I   ++  
Sbjct: 350 ---------------------------GFCKIKMVDEAINLFEEMR---CRKIIP-NVVT 378

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           YSS  +G        +   L + ++   +P        PN   Y++++        V   
Sbjct: 379 YSSLIDGLCKLGRIFYALKLVDEMHDRGQP--------PNIVTYSSILDALCKNHHVDKA 430

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +L  ++   D    PD  TYT ++  L ++G ++ A+ V  ++   G   +   Y ++
Sbjct: 431 IALLTNLK---DQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVM 487

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           ++G+C +   DKA  LL +M D+  I P+  +Y ++I      D++  A     EM  RG
Sbjct: 488 IQGFCDKGFFDKALALLSKMEDNGCI-PNAKTYELVILSLFEKDENDTAEKLLREMIVRG 546

Query: 353 I 353
           +
Sbjct: 547 L 547


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 184/438 (42%), Gaps = 88/438 (20%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S   +  ++ ++  C  L +  +  + F  M E G  P + T N M+ L  + +R  +  
Sbjct: 175 SVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAW 234

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +   +  + I+  + TF  +V      G L+ A   +  M                   
Sbjct: 235 VLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFM------------------- 275

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E  G                             F PN   Y T++ GY + G +    
Sbjct: 276 --EGLG-----------------------------FKPNVVSYNTIIHGYSSRGNIEGAR 304

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R+L AMR +      PD  TY +++S + K G ++ A  +  +M  IG+  N +TYN L+
Sbjct: 305 RILDAMRVK---GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 361

Query: 294 KGYCQQLQIDKAKELLREM---------------------------ADD-------AKIE 319
            GYC +  +++A     EM                           ADD         I 
Sbjct: 362 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGII 421

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD ++YNILI+G+    ++  A    NEM ++GI PT ++YT+L+   +  ++ K A+ +
Sbjct: 422 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 481

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F+++L D  V  D++ +N +V+G+C  G VE A  +++ M      P+  T+ +L  G  
Sbjct: 482 FEKIL-DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRC 540

Query: 440 LARKPGEALLLWKEIKER 457
              K  EA +L  E+K R
Sbjct: 541 REGKVEEARMLLDEMKRR 558



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 176/384 (45%), Gaps = 20/384 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+  +YN +++  ++ G  +   ++ D M   G +PD  TY  +I    +  R      
Sbjct: 281 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 340

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + ++++E+G+     T+ +L+  Y   GDLE A +    M   ++ +   +   +L  ++
Sbjct: 341 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV--KKGIMPSVSTYNLLVHA 398

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG   + D++ +++    I              P++  Y  L+ GY   G       
Sbjct: 399 LFMEGRMGEADDMIKEMRKKGI-------------IPDAITYNILINGYSRCGNAKKAFD 445

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      P HVTYT+++  L +   M  A  +  ++   GV  + I +N ++ 
Sbjct: 446 LHNEMLSK---GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 502

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C    +++A  LL+EM D   + PD V++N L+ G         A    +EM+ RGI 
Sbjct: 503 GHCANGNVERAFMLLKEM-DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 561

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ISY TL+  +      K A +V DEML        ++ +N L++  C+    + A+ 
Sbjct: 562 PDHISYNTLISGYGRRGDIKDAFRVRDEML-SIGFNPTLLTYNALIKCLCKNQEGDLAEE 620

Query: 415 IIERMKENGFYPNVATYGSLANGI 438
           +++ M   G  P+ +TY SL  G+
Sbjct: 621 LLKEMVNKGISPDDSTYLSLIEGM 644



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 184/399 (46%), Gaps = 35/399 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P+V +++T++   ++ G+             ++  R+  D   V   +PD+  Y ++
Sbjct: 279 GFKPNVVSYNTIIHGYSSRGN-------------IEGARRILDAMRVKGIEPDSYTYGSL 325

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           ++     G+ ++   LFD+M E G  P+ +TYN +I   C +   +    +  + +++ G
Sbjct: 326 ISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY-RDEMVKKG 384

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I   ++T+  LV A    G +  A+ +++ MR+       I   + +  YS         
Sbjct: 385 IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAF 444

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
           D       L N         +L K   P    YT+L+       R+ +   +     +  
Sbjct: 445 D-------LHNE--------MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF---EKIL 486

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           D    PD + +  +V      G+++RA  +L EM R  VP + +T+N L++G C++ +++
Sbjct: 487 DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVE 546

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A+ LL EM     I+PD +SYN LI G+    D   A    +EM + G  PT ++Y  L
Sbjct: 547 EARMLLDEMKRRG-IKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL 605

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
           +K    + +  LA ++  EM+ +  +  D   +  L+EG
Sbjct: 606 IKCLCKNQEGDLAEELLKEMV-NKGISPDDSTYLSLIEG 643



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 181/397 (45%), Gaps = 24/397 (6%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLE 117
            +N ++N     GK KK  +    M   G KP+V++YN +I     +SR ++     +L+
Sbjct: 251 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIH--GYSSRGNIEGARRILD 308

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
            +   GI     T+ SL++     G LE A  +   M E       +     ++ Y   N
Sbjct: 309 AMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYC--N 366

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +GD        E+        S    ++ K   P+   Y  L+     EGR+ +   M+ 
Sbjct: 367 KGD-------LERAF------SYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 413

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            MR++      PD +TY  +++   + G+  +A  +  EM   G+    +TY  L+    
Sbjct: 414 EMRKK---GIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS 470

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           ++ ++ +A +L  ++ D   + PDV+ +N ++DG     +   A     EM  + + P +
Sbjct: 471 RRNRMKEADDLFEKILDQG-VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE 529

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           +++ TLM+      + + A  + DEM R   +K D +++N L+ GY R G +++A R+ +
Sbjct: 530 VTFNTLMQGRCREGKVEEARMLLDEMKRRG-IKPDHISYNTLISGYGRRGDIKDAFRVRD 588

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            M   GF P + TY +L   +   ++   A  L KE+
Sbjct: 589 EMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM 625



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 71/343 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G +P V  ++ +V  L   G  G        D ++K +RK     I+    PD   
Sbjct: 380 MVKKGIMPSVSTYNLLVHALFMEGRMGEA------DDMIKEMRK---KGII----PDAIT 426

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N  +  G  KK   L ++M   G +P  +TY  +I + +R +R      + E+IL
Sbjct: 427 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 486

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G++  +  F ++V  +   G++E A  +++ M                          
Sbjct: 487 DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDR------------------------ 522

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K+  P+   + TLM+G   EG+V +   +L  M+
Sbjct: 523 --------------------------KSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMK 556

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R+      PDH++Y T++S   + G +  A +V  EM  IG     +TYN L+K  C+  
Sbjct: 557 RR---GIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQ 613

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGF----ILIDDSA 339
           + D A+ELL+EM +   I PD  +Y  LI+G      L++D+A
Sbjct: 614 EGDLAEELLKEMVNKG-ISPDDSTYLSLIEGMGNVDTLVEDNA 655



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 43/327 (13%)

Query: 248 HP---DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR------------------ 286
           HP   D  +Y   V  L +  S   A Q+L ++    +  NR                  
Sbjct: 120 HPHCLDTKSYCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSS 179

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           I +++L++  C+  + D+A +    M +   I P + + N ++  F+ ++    A   + 
Sbjct: 180 IVFDLLVRVCCELRRADEAFKCFYMMKEKG-IVPKIETCNDMLSLFLKLNRMEMAWVLYA 238

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM    I+ T  ++  ++       + K A + F   +     K ++V++N ++ GY   
Sbjct: 239 EMFRLRISSTVYTFNIMVNVLCKEGKLKKARE-FIGFMEGLGFKPNVVSYNTIIHGYSSR 297

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK---- 462
           G +E A+RI++ M+  G  P+  TYGSL +G+    +  EA  L+ ++ E   V      
Sbjct: 298 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 357

Query: 463 ----EGVNADSDLPPPLKPDEELLD-------ALADICVRAAFFR----KALEIVACMEE 507
               +G     DL       +E++        +  ++ V A F      +A +++  M +
Sbjct: 358 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 417

Query: 508 HGIPPNKTKYKKIYVEMHSRMFTSKHA 534
            GI P+   Y  I +  +SR   +K A
Sbjct: 418 KGIIPDAITY-NILINGYSRCGNAKKA 443


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 197/481 (40%), Gaps = 75/481 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L + A   +      L +QM  FG  PDV T N++I      +R      V
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSV 126

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G      TF +L+                       R +C             
Sbjct: 127 LAKILKLGHQPDTATFTTLI-----------------------RGLCV------------ 151

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   D   +F+K++              + F PN   Y TL+ G    G  +  +R+
Sbjct: 152 --EGKIGDALHLFDKMIG-------------EGFQPNVVTYGTLINGLCKVGNTNAAIRL 196

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R  E     PD V YT+++ +L K   +  A  + ++M   G+  +  TY  L+  
Sbjct: 197 L---RSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHS 253

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL +M + +KI PDVV ++ ++D          A    + M  RG+ P
Sbjct: 254 LCNLCEWKHVTTLLNQMIN-SKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEP 312

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y  LM    L S+   A KVFD M+ +     +++++N L+ GYC++  +++A  +
Sbjct: 313 NVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAP-NVISYNTLINGYCKIQRMDKATYL 371

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV--------------K 461
            E M +    PN  TY +L +   + R   +A+ L+ E+    ++              K
Sbjct: 372 FEEMCQKELIPNTVTYNTLMHXCHVGRLQ-DAIALFHEMVAHGQIPDLATYRILLDYLCK 430

Query: 462 KEGVNADSDLPPPLK-----PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           K  ++    L   ++     PD ++   + D   RA     A +I + +   G+ PN   
Sbjct: 431 KSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRT 490

Query: 517 Y 517
           Y
Sbjct: 491 Y 491



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/459 (20%), Positives = 195/459 (42%), Gaps = 38/459 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P    ++T++  L   G  G  +++ LFD ++               +P+   
Sbjct: 130 ILKLGHQPDTATFTTLIRGLCVEGKIG--DALHLFDKMIGE-----------GFQPNVVT 176

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +PDV+ Y  +I    +  +      +  +++
Sbjct: 177 YGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMV 236

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELDLEDYSSENE 178
             GI+  + T+ SL+ +     + +   T++  M   +   DV      +D    +   E
Sbjct: 237 GQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD----ALCKE 292

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   +  +V + ++   + P             N   Y  LM G+  +  + + V++   
Sbjct: 293 GKITEAHDVVDMMIIRGVEP-------------NVVTYNALMDGHCLQSEMDEAVKVFDT 339

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M     N   P+ ++Y T+++   K   MD+A  +  EM +  +  N +TYN L+   C 
Sbjct: 340 MVH---NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCH 395

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++  A  L  EM    +I PD+ +Y IL+D          A+     +    + P   
Sbjct: 396 VGRLQDAIALFHEMVAHGQI-PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQ 454

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            YT ++     + + + A  +F   L    ++ ++  + +++ G CR GL++EA ++   
Sbjct: 455 IYTIVIDGMCRAGELEAARDIFSN-LSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFME 513

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           M  NG  P+  TY ++  G+   ++   A+ L +E+  R
Sbjct: 514 MDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLAR 552



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 173/426 (40%), Gaps = 88/426 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P+V  + T+++ L   G+          +  ++ +R         + +PD   
Sbjct: 165 MIGEGFQPNVVTYGTLINGLCKVGNT---------NAAIRLLRSMEQ----GNCQPDVVV 211

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y +++++     +  +   LF +M   G  PD+ TY  +I  LC     KH+   +L ++
Sbjct: 212 YTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT-LLNQM 270

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR--ELDLEDYSSEN 177
           +   I   +  F ++V A    G +  A  +V  M         IIR  E ++  Y++  
Sbjct: 271 INSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMM---------IIRGVEPNVVTYNALM 321

Query: 178 EG-----DDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFA 210
           +G     + D+  +VF+ ++ N   P+                          +  K   
Sbjct: 322 DGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI 381

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAM------------------------------- 239
           PN+  Y TLM    + GR+ D + +   M                               
Sbjct: 382 PNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMAL 440

Query: 240 -RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            +  E +   PD   YT V+  + +AG ++ AR + + ++  G+  N  TY I++ G C+
Sbjct: 441 LKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCR 500

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           +  +D+A +L  EM D     PD  +YN +  G +   ++  A+    EM ARG +   +
Sbjct: 501 RGLLDEANKLFMEM-DGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS-ADV 558

Query: 359 SYTTLM 364
           S TTL+
Sbjct: 559 STTTLL 564



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  V +  +++++ K         +  +M   G+P +  T NIL+  +C   ++  A  +
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSV 126

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L ++      +PD  ++  LI G  +      AL  F++M   G  P  ++Y TL+    
Sbjct: 127 LAKILKLGH-QPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC 185

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                  A ++   M      + D+V +  +++  C+   V EA  +  +M   G  P++
Sbjct: 186 KVGNTNAAIRLLRSM-EQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDI 244

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY SL + +         L  WK +     +  + +N+       + PD  +   + D 
Sbjct: 245 FTYTSLIHSLC-------NLCEWKHVT---TLLNQMINSK------IMPDVVIFSTVVDA 288

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +A ++V  M   G+ PN   Y  +
Sbjct: 289 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNAL 320



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 132/334 (39%), Gaps = 39/334 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ S  +P V  +STVV  L   G     +  +  DVV        D  I+   +P+   
Sbjct: 270 MINSKIMPDVVIFSTVVDALCKEG-----KITEAHDVV--------DMMIIRGVEPNVVT 316

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA+++      +  + +++FD M   G  P+V++YN +I    +  R     ++ E + 
Sbjct: 317 YNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMC 376

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN--- 177
           +  +     T+ +L+      G L+ A  +   M      +  +     L DY  +    
Sbjct: 377 QKELIPNTVTYNTLMHX-CHVGRLQDAIALFHEMV-AHGQIPDLATYRILLDYLCKKSHL 434

Query: 178 ----------EGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTL 219
                     EG + D D     ++ + +  + E          L  K   PN R YT +
Sbjct: 435 DEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIM 494

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G    G + +  ++   M   + N   PD  TY T+   L++     RA Q+L EM  
Sbjct: 495 INGLCRRGLLDEANKLFMEM---DGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLA 551

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
            G  A+  T  +L++  C        K++L E  
Sbjct: 552 RGFSADVSTTTLLVEMLCDDKLDQSVKQILSEFV 585



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F  +DD   AL+ FN M      P+ + +  L+ + A + Q      + ++M     +  
Sbjct: 47  FNTLDD---ALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQM-DSFGIPP 102

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D+   N+L+  +C +  +  A  ++ ++ + G  P+ AT+ +L  G+ +  K G+AL L+
Sbjct: 103 DVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLF 162

Query: 452 KEI 454
            ++
Sbjct: 163 DKM 165


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 211/465 (45%), Gaps = 38/465 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN ++N      +    ++LF+++ + G  PDV+TYN +I    +A        +
Sbjct: 79  PTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRL 138

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G    + T+  L+      G ++ A  ++Q M    R  C ++   ++  Y+S
Sbjct: 139 HGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMT---RKSCDVLP--NIITYNS 193

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR- 234
             +G            L  S+   S         +P++  ++TL+ G    G+  +    
Sbjct: 194 FLDGLCKQSMTAEACELMRSLRDGS------LRVSPDTVTFSTLIDGLCKCGQTDEACND 247

Query: 235 -MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            M+            P+ VTY  +V+ L KA  M+RA  ++  M   GV  + ITY++L+
Sbjct: 248 DMIAG-------GYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLV 300

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
             +C+  ++D+A ELL  MA      P+VV++N +IDG    D S  A     ++  R +
Sbjct: 301 DAFCKASRVDEALELLHGMASRG-CTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRML 359

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P K+++  L+     +   + A+ +F+EM+    ++ D++ +  L++G C+ G VE A+
Sbjct: 360 VPDKVTFNILIAGACKAGNFEQASALFEEMVAK-NMQPDVMTFGALIDGLCKAGQVEAAR 418

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            I++ M   G  PNV TY  L +G+    K G        I+E CE  +E V++      
Sbjct: 419 DILDLMGNLGVPPNVVTYNVLVHGLC---KSG-------RIEEPCEFLEEMVSSGC---- 464

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
              P+     +L     RA+    AL++V+ ++  G  P+   Y 
Sbjct: 465 --VPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYN 507



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 59/364 (16%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP    Y T++ G      +   + +   + ++     HPD VTY T++ +L KAG ++ 
Sbjct: 78  APTIVTYNTIINGLCKSNELGAGMELFEELVKR---GHHPDVVTYNTLIDSLCKAGDLEE 134

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA-DDAKIEPDVVSYNIL 328
           AR++   M+  G   N +TY++L+ G C+  +ID+A+EL++EM      + P++++YN  
Sbjct: 135 ARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSF 194

Query: 329 IDGFILIDDSAGALTFFNEMR-----------------------------------ARGI 353
           +DG      +A A      +R                                   A G 
Sbjct: 195 LDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGY 254

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++Y  L+     + + + A+ + + M+ D  V  D++ +++LV+ +C+   V+EA 
Sbjct: 255 VPNVVTYNALVNGLCKADKMERAHAMIESMV-DKGVTPDVITYSVLVDAFCKASRVDEAL 313

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER---------------- 457
            ++  M   G  PNV T+ S+ +G+  + + GEA  +  ++  R                
Sbjct: 314 ELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGA 373

Query: 458 CEVKK-EGVNA--DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           C+    E  +A  +  +   ++PD     AL D   +A     A +I+  M   G+PPN 
Sbjct: 374 CKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNV 433

Query: 515 TKYK 518
             Y 
Sbjct: 434 VTYN 437



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/480 (21%), Positives = 211/480 (43%), Gaps = 48/480 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P +  ++T+++ L  S + G    ++LF+ +VKR              PD   
Sbjct: 72  MARDGVAPTIVTYNTIINGLCKSNELGA--GMELFEELVKR-----------GHHPDVVT 118

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++++    G  ++  +L   M   G  P+V+TY+V+I    +  R   +    E I 
Sbjct: 119 YNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGR---IDEARELIQ 175

Query: 121 EMGITLC-----MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC--KIIRELDLEDY 173
           EM    C     + T+ S +           A  +++++R+G   V    +     ++  
Sbjct: 176 EMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGL 235

Query: 174 SSENEGDDD-DDDEVFEKLLPNSINPSSE-----------------PPLLPKTFAPNSRI 215
               + D+  +DD +    +PN +  ++                    ++ K   P+   
Sbjct: 236 CKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVIT 295

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y+ L+  +    RV + + +L  M  +      P+ VT+ +++  L K+     A Q+  
Sbjct: 296 YSVLVDAFCKASRVDEALELLHGMASR---GCTPNVVTFNSIIDGLCKSDRSGEAFQIAL 352

Query: 276 EM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
           ++  R+ VP +++T+NIL+ G C+    ++A  L  EM     ++PDV+++  LIDG   
Sbjct: 353 QVYNRMLVP-DKVTFNILIAGACKAGNFEQASALFEEMVAK-NMQPDVMTFGALIDGLCK 410

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 A    + M   G+ P  ++Y  L+     S + +   +  +EM+    V  + +
Sbjct: 411 AGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVP-ESM 469

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +  LV   CR    ++A +++ ++K  G+ P+  TY  L +G+  + K  +A+ + +E+
Sbjct: 470 TYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEM 529



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 123/306 (40%), Gaps = 58/306 (18%)

Query: 254 YTTVVSALVKAGSMDRARQVL-AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           Y  V+ +L +AG   RA ++   EM R GV    +TYN ++ G C+  ++    EL  E+
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                  PDVV+YN LID      D   A      M +RG  P  ++Y+ L+       +
Sbjct: 108 VKRGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGR 166

Query: 373 PKLANKVFDEM------------------------------------LRDP--RVKVDIV 394
              A ++  EM                                    LRD   RV  D V
Sbjct: 167 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 226

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            ++ L++G C+ G  +EA    + M   G+ PNV TY +L NG+  A K   A  + + +
Sbjct: 227 TFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESM 284

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
            ++      GV           PD      L D   +A+   +ALE++  M   G  PN 
Sbjct: 285 VDK------GVT----------PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNV 328

Query: 515 TKYKKI 520
             +  I
Sbjct: 329 VTFNSI 334



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 154/389 (39%), Gaps = 55/389 (14%)

Query: 46  SDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105
           +D  I     P+   YNA++N      K ++   + + M + G  PDV+TY+V++    +
Sbjct: 246 NDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCK 305

Query: 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII 165
           ASR    + +L  +   G T  + TF S++                         +CK  
Sbjct: 306 ASRVDEALELLHGMASRGCTPNVVTFNSIIDG-----------------------LCK-- 340

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
                           D   E F+  L           +  +   P+   +  L+ G   
Sbjct: 341 ---------------SDRSGEAFQIALQ----------VYNRMLVPDKVTFNILIAGACK 375

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            G       +   M  +      PD +T+  ++  L KAG ++ AR +L  M  +GVP N
Sbjct: 376 AGNFEQASALFEEMVAKN---MQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 432

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
            +TYN+L+ G C+  +I++  E L EM     + P+ ++Y  L+        +  AL   
Sbjct: 433 VVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCV-PESMTYGSLVYALCRASRTDDALQLV 491

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
           +++++ G  P  ++Y  L+     S + + A  V +EM+     + D   +     G  R
Sbjct: 492 SKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGH-QPDSFTFAACFGGLHR 550

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSL 434
            G +     ++  +   G  P+  T  S+
Sbjct: 551 SGNLAGTMELLRVVLAKGMLPDATTCSSI 579



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 151/366 (41%), Gaps = 36/366 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  GY+P+V  ++ +V+ L  +               ++R     +  +     PD   
Sbjct: 249 MIAGGYVPNVVTYNALVNGLCKADK-------------MERAHAMIESMVDKGVTPDVIT 295

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++A     +  + L+L   M   G  P+V+T+N +I    ++ R      +  ++ 
Sbjct: 296 YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVY 355

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENE 178
              +     TF  L+A     G+ E A  + + M  +  + DV      +D    + + E
Sbjct: 356 NRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVE 415

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
              D  D     L+ N   P            PN   Y  L+ G    GR+ +    L  
Sbjct: 416 AARDILD-----LMGNLGVP------------PNVVTYNVLVHGLCKSGRIEEPCEFLEE 458

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M     +   P+ +TY ++V AL +A   D A Q+++++   G   + +TYNIL+ G  +
Sbjct: 459 MV---SSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWK 515

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             + ++A  +L EM      +PD  ++     G     + AG +     + A+G+ P   
Sbjct: 516 SGKTEQAITVLEEMVGKGH-QPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDAT 574

Query: 359 SYTTLM 364
           + ++++
Sbjct: 575 TCSSIL 580


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 143/311 (45%), Gaps = 20/311 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K F+ +   Y TL+ G    G+  D + +L   R+ E     P+ + Y  VV  L K G 
Sbjct: 155 KGFSFDEVCYGTLINGLCKMGKTRDAIELL---RKMEKGGVRPNLIMYNMVVDGLCKEGL 211

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A  + +EM   G+  +  TYN L+ G+C   Q   A  LL EM     + PDV ++N
Sbjct: 212 VTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFN 271

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           IL+D    +   A A   F  M  RG+ P  +S   LM  + L      A +VFD M+  
Sbjct: 272 ILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVER 331

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
            ++  ++++++ L+ GYC++ +V+EA R++  M +    P+  TY  L +G+S   K G 
Sbjct: 332 GKLP-NVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLS---KSGR 387

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
            L  W  +        E + A         PD    + L D  ++     KAL +   + 
Sbjct: 388 VLYEWDLV--------EAMRASGQ-----APDLITYNVLLDDYLKRECLDKALALFQHIV 434

Query: 507 EHGIPPNKTKY 517
           + GI PN   Y
Sbjct: 435 DTGISPNIRTY 445



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 198/454 (43%), Gaps = 82/454 (18%)

Query: 48  PDIVSDSK-----PDTAAYNAVLNACANL---GKPKK-------FLQLFDQMHEFGAKPD 92
           P IVS +K       T  Y  V++ C++L   G PK        F+     + + G    
Sbjct: 53  PSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIFINSLTHLGQMG---- 108

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL------VAAYVGFGDLEI 146
            L ++VM K+  R        F L  +++ G+ L   TF++L      V+    F ++  
Sbjct: 109 -LAFSVMAKIVKRGFGVD--PFTLTTLMK-GLCLKGRTFEALNLYDHAVSKGFSFDEVCY 164

Query: 147 AETIVQAMREGR-RDVCKIIREL-------DLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
              I    + G+ RD  +++R++       +L  Y+   +G         E L+  +   
Sbjct: 165 GTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDG------LCKEGLVTEACGL 218

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
            SE  ++ K    +   Y +L+ G+   G+    VR+L  M  +ED    PD  T+  +V
Sbjct: 219 CSE--MVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKED--VRPDVYTFNILV 274

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
            AL K G +  AR V   M + G+  + ++ N L+ G+C +  + +AKE+   M +  K+
Sbjct: 275 DALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKL 334

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ------ 372
            P+V+SY+ LI+G+  +     AL    EM  R + P  ++Y  L+   + S +      
Sbjct: 335 -PNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWD 393

Query: 373 -----------PKLA--NKVFDEMLR---------------DPRVKVDIVAWNMLVEGYC 404
                      P L   N + D+ L+               D  +  +I  +N+L++G C
Sbjct: 394 LVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLC 453

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           + G ++ AK I + +   G  PN+ TY  + NG+
Sbjct: 454 KGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGL 487



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 114/247 (46%), Gaps = 42/247 (17%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC----------- 297
           P  VT +  +++L   G M  A  V+A++ + G   +  T   L+KG C           
Sbjct: 89  PSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNL 148

Query: 298 ------QQLQIDK------------------AKELLREMADDAKIEPDVVSYNILIDGFI 333
                 +    D+                  A ELLR+M +   + P+++ YN+++DG  
Sbjct: 149 YDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKM-EKGGVRPNLIMYNMVVDGLC 207

Query: 334 ---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
              L+ ++ G     +EM  +GI     +Y +L+  F  + Q + A ++ +EM+    V+
Sbjct: 208 KEGLVTEACG---LCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVR 264

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+  +N+LV+  C++G+V EA+ +   M + G  P+V +  +L NG  L     EA  +
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV 324

Query: 451 WKEIKER 457
           +  + ER
Sbjct: 325 FDRMVER 331



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 106/288 (36%), Gaps = 49/288 (17%)

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L K  + D A      M  +  P + ++ N LL    +         L   +      +
Sbjct: 29  TLPKTPTFDDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPK 88

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P +V+ +I I+    +     A +   ++  RG      + TTLMK   L  +   A  +
Sbjct: 89  PSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNL 148

Query: 380 FD-------------------------------EMLRDPR---VKVDIVAWNMLVEGYCR 405
           +D                               E+LR      V+ +++ +NM+V+G C+
Sbjct: 149 YDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCK 208

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
            GLV EA  +   M   G   +V TY SL +G   A +   A+ L  E+     V KE V
Sbjct: 209 EGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEM-----VMKEDV 263

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                     +PD    + L D   +     +A  +   M + G+ P+
Sbjct: 264 ----------RPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPD 301



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 25/295 (8%)

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
           VR  ++  +  D +PD   +N +++A   LG   +   +F  M + G +PDV++ N ++ 
Sbjct: 251 VRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMN 310

Query: 102 -LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
             C R         V +R++E G    + ++ +L+  Y     ++ A  ++  M +    
Sbjct: 311 GWCLRGCMSEAKE-VFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQ---- 365

Query: 161 VCKIIREL--DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                R L  D   Y+   +G       ++E  L  ++  S +        AP+   Y  
Sbjct: 366 -----RNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQ--------APDLITYNV 412

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+  Y+    +    + L   +   D    P+  TY  ++  L K G M  A+++   ++
Sbjct: 413 LLDDYLKRECLD---KALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLS 469

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             G   N  TYNI++ G  ++  +D+A+ LL EM DD    P+ V+++ L+   +
Sbjct: 470 VKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDG-FPPNAVTFDPLVRALL 523



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 121/292 (41%), Gaps = 31/292 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V  ++ +V  L   G     E+  +F +++KR             +PD  + NA++N 
Sbjct: 265 PDVYTFNILVDALCKLGM--VAEARNVFGLMIKR-----------GLEPDVVSCNALMNG 311

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
               G   +  ++FD+M E G  P+V++Y+ +I    +       + +L  + +  +   
Sbjct: 312 WCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPD 371

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             T+  L+      G +     +V+AMR   +    I   + L+DY        D    +
Sbjct: 372 TVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRE--CLDKALAL 429

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F+ ++   I             +PN R Y  L+ G    GR+     +   +  +     
Sbjct: 430 FQHIVDTGI-------------SPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVK---GC 473

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            P+  TY  +++ L + G +D A  +L EM   G P N +T++ L++   ++
Sbjct: 474 RPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRALLEK 525


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 184/438 (42%), Gaps = 88/438 (20%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S   +  ++ ++  C  L +  +  + F  M E G  P + T N M+ L  + +R  +  
Sbjct: 153 SVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAW 212

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +   +  + I+  + TF  +V      G L+ A   +  M                   
Sbjct: 213 VLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFM------------------- 253

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E  G                             F PN   Y T++ GY + G +    
Sbjct: 254 --EGLG-----------------------------FKPNVVSYNTIIHGYSSRGNIEGAR 282

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R+L AMR +      PD  TY +++S + K G ++ A  +  +M  IG+  N +TYN L+
Sbjct: 283 RILDAMRVK---GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 339

Query: 294 KGYCQQLQIDKAKELLREM---------------------------ADD-------AKIE 319
            GYC +  +++A     EM                           ADD         I 
Sbjct: 340 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGII 399

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD ++YNILI+G+    ++  A    NEM ++GI PT ++YT+L+   +  ++ K A+ +
Sbjct: 400 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 459

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F+++L D  V  D++ +N +V+G+C  G VE A  +++ M      P+  T+ +L  G  
Sbjct: 460 FEKIL-DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRC 518

Query: 440 LARKPGEALLLWKEIKER 457
              K  EA +L  E+K R
Sbjct: 519 REGKVEEARMLLDEMKRR 536



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 176/384 (45%), Gaps = 20/384 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+  +YN +++  ++ G  +   ++ D M   G +PD  TY  +I    +  R      
Sbjct: 259 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 318

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + ++++E+G+     T+ +L+  Y   GDLE A +    M   ++ +   +   +L  ++
Sbjct: 319 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV--KKGIMPSVSTYNLLVHA 376

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG   + D++ +++    I              P++  Y  L+ GY   G       
Sbjct: 377 LFMEGRMGEADDMIKEMRKKGI-------------IPDAITYNILINGYSRCGNAKKAFD 423

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      P HVTYT+++  L +   M  A  +  ++   GV  + I +N ++ 
Sbjct: 424 LHNEMLSK---GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 480

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C    +++A  LL+EM D   + PD V++N L+ G         A    +EM+ RGI 
Sbjct: 481 GHCANGNVERAFMLLKEM-DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 539

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ISY TL+  +      K A +V DEML        ++ +N L++  C+    + A+ 
Sbjct: 540 PDHISYNTLISGYGRRGDIKDAFRVRDEML-SIGFNPTLLTYNALIKCLCKNQEGDLAEE 598

Query: 415 IIERMKENGFYPNVATYGSLANGI 438
           +++ M   G  P+ +TY SL  G+
Sbjct: 599 LLKEMVNKGISPDDSTYLSLIEGM 622



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 184/399 (46%), Gaps = 35/399 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P+V +++T++   ++ G+             ++  R+  D   V   +PD+  Y ++
Sbjct: 257 GFKPNVVSYNTIIHGYSSRGN-------------IEGARRILDAMRVKGIEPDSYTYGSL 303

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           ++     G+ ++   LFD+M E G  P+ +TYN +I   C +   +    +  + +++ G
Sbjct: 304 ISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY-RDEMVKKG 362

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I   ++T+  LV A    G +  A+ +++ MR+       I   + +  YS         
Sbjct: 363 IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAF 422

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
           D       L N         +L K   P    YT+L+       R+ +   +     +  
Sbjct: 423 D-------LHNE--------MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF---EKIL 464

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           D    PD + +  +V      G+++RA  +L EM R  VP + +T+N L++G C++ +++
Sbjct: 465 DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVE 524

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A+ LL EM     I+PD +SYN LI G+    D   A    +EM + G  PT ++Y  L
Sbjct: 525 EARMLLDEMKRRG-IKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL 583

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
           +K    + +  LA ++  EM+ +  +  D   +  L+EG
Sbjct: 584 IKCLCKNQEGDLAEELLKEMV-NKGISPDDSTYLSLIEG 621



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 177/395 (44%), Gaps = 20/395 (5%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            +N ++N     GK KK  +    M   G KP+V++YN +I   +          +L+ +
Sbjct: 229 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAM 288

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              GI     T+ SL++     G LE A  +   M E       +     ++ Y   N+G
Sbjct: 289 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYC--NKG 346

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D        E+        S    ++ K   P+   Y  L+     EGR+ +   M+  M
Sbjct: 347 D-------LERAF------SYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 393

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R++      PD +TY  +++   + G+  +A  +  EM   G+    +TY  L+    ++
Sbjct: 394 RKK---GIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 450

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A +L  ++ D   + PDV+ +N ++DG     +   A     EM  + + P +++
Sbjct: 451 NRMKEADDLFEKILDQG-VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVT 509

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           + TLM+      + + A  + DEM R   +K D +++N L+ GY R G +++A R+ + M
Sbjct: 510 FNTLMQGRCREGKVEEARMLLDEMKRRG-IKPDHISYNTLISGYGRRGDIKDAFRVRDEM 568

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
              GF P + TY +L   +   ++   A  L KE+
Sbjct: 569 LSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM 603



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 71/343 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G +P V  ++ +V  L   G  G        D ++K +RK     I+    PD   
Sbjct: 358 MVKKGIMPSVSTYNLLVHALFMEGRMGEA------DDMIKEMRK---KGII----PDAIT 404

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N  +  G  KK   L ++M   G +P  +TY  +I + +R +R      + E+IL
Sbjct: 405 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 464

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G++  +  F ++V  +   G++E A  +++ M                          
Sbjct: 465 DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDR------------------------ 500

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K+  P+   + TLM+G   EG+V +   +L  M+
Sbjct: 501 --------------------------KSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMK 534

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R+      PDH++Y T++S   + G +  A +V  EM  IG     +TYN L+K  C+  
Sbjct: 535 RR---GIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQ 591

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGF----ILIDDSA 339
           + D A+ELL+EM +   I PD  +Y  LI+G      L++D+A
Sbjct: 592 EGDLAEELLKEMVNKG-ISPDDSTYLSLIEGMGNVDTLVEDNA 633



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 43/327 (13%)

Query: 248 HP---DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR------------------ 286
           HP   D  +Y   V  L +  S   A Q+L ++    +  NR                  
Sbjct: 98  HPHCLDTKSYCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSS 157

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           I +++L++  C+  + D+A +    M +   I P + + N ++  F+ ++    A   + 
Sbjct: 158 IVFDLLVRVCCELRRADEAFKCFYMMKEKG-IVPKIETCNDMLSLFLKLNRMEMAWVLYA 216

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM    I+ T  ++  ++       + K A + F   +     K ++V++N ++ GY   
Sbjct: 217 EMFRLRISSTVYTFNIMVNVLCKEGKLKKARE-FIGFMEGLGFKPNVVSYNTIIHGYSSR 275

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK---- 462
           G +E A+RI++ M+  G  P+  TYGSL +G+    +  EA  L+ ++ E   V      
Sbjct: 276 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 335

Query: 463 ----EGVNADSDLPPPLKPDEELLD-------ALADICVRAAFFR----KALEIVACMEE 507
               +G     DL       +E++        +  ++ V A F      +A +++  M +
Sbjct: 336 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 395

Query: 508 HGIPPNKTKYKKIYVEMHSRMFTSKHA 534
            GI P+   Y  I +  +SR   +K A
Sbjct: 396 KGIIPDAITY-NILINGYSRCGNAKKA 421


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 171/387 (44%), Gaps = 60/387 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA-RASRKHLLVF 114
           P   AY A+L+  A  G  K+   LF+ M E G  P+VLTYN +I  C  RA R   LV 
Sbjct: 63  PSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVG 122

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC--KIIRELDLED 172
           + E + + G+     T+  +V A V    L + +T  Q ++E +   C   +I    + +
Sbjct: 123 LFEEMKQAGVQPNDITYNCMVNACVC---LSLFDTASQILKEMKAVNCLPNVISYTTMIN 179

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
            S    G  D+  E+FE++    +  S           PNS  Y +L+K Y  EGR    
Sbjct: 180 -SLGRSGRLDEAVELFEEM--KELGRS-----------PNSWTYNSLLKAYAREGRYEKA 225

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M   ED    PD  TY TV+    + G    A  V  EM R G   +R+TYN +
Sbjct: 226 MCLFVGM---EDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTM 282

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L  Y +  +  +A++LL+ M   A   PD+ +YNIL+D       ++ A+  F+E++A G
Sbjct: 283 LDAYSKWSRRGRARDLLKTM-KRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAG 341

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            +P  +S++ L+                                NM    Y R+G  EEA
Sbjct: 342 HSPNLVSFSALI--------------------------------NM----YGRLGYFEEA 365

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           +R    M+  G  PN   Y  L N  S
Sbjct: 366 ERAWVEMRATGCVPNATAYCGLMNSYS 392



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 156/354 (44%), Gaps = 25/354 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-AGSMD 268
           AP+   YT L+ GY  +G + +   +  AM+   +    P+ +TY T+++A  K A  + 
Sbjct: 62  APSVHAYTALLSGYAKQGLLKEAWALFEAMK---EKGCSPNVLTYNTLINACTKRAYRLP 118

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
               +  EM + GV  N ITYN ++         D A ++L+EM       P+V+SY  +
Sbjct: 119 DLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEM-KAVNCLPNVISYTTM 177

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+          A+  F EM+  G +P   +Y +L+KA+A   + + A  +F  M  D  
Sbjct: 178 INSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGM-EDEG 236

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              D+  +N +++   R GL  EA+ +   M+  G  P+  TY ++ +  S   + G A 
Sbjct: 237 CIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRAR 296

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L K +K             +   P L     LLDA      +A    +A++I   ++  
Sbjct: 297 DLLKTMKR------------AGCTPDLWTYNILLDAAG----KAGSASEAMQIFHELKAA 340

Query: 509 GIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSY 562
           G  PN   +  + + M+ R+   + A +A  + R            + GL NSY
Sbjct: 341 GHSPNLVSFSAL-INMYGRLGYFEEAERAWVEMR--ATGCVPNATAYCGLMNSY 391



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 25/269 (9%)

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           T++S L + G +  AR++   M++ GV  +   Y  LL GY +Q  + +A  L   M + 
Sbjct: 35  TIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEK 94

Query: 316 AKIEPDVVSYNILIDGFI----LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
               P+V++YN LI+        + D  G    F EM+  G+ P  I+Y  ++ A    S
Sbjct: 95  G-CSPNVLTYNTLINACTKRAYRLPDLVG---LFEEMKQAGVQPNDITYNCMVNACVCLS 150

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
               A+++  EM +      +++++  ++    R G ++EA  + E MKE G  PN  TY
Sbjct: 151 LFDTASQILKEM-KAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTY 209

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            SL    +   +  +A+ L+  +++      EG            PD    + + D+C R
Sbjct: 210 NSLLKAYAREGRYEKAMCLFVGMED------EGC----------IPDLYTYNTVIDMCGR 253

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              F +A  +   M+  G  P++  Y  +
Sbjct: 254 GGLFAEAEGVFLEMQRKGCTPDRVTYNTM 282



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 152/393 (38%), Gaps = 81/393 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRV--RKF 45
           M ++G  P V A++ ++S  A  G             + G   +V  ++ ++     R +
Sbjct: 56  MSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAY 115

Query: 46  SDPDIV--------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
             PD+V        +  +P+   YN ++NAC  L       Q+  +M      P+V++Y 
Sbjct: 116 RLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYT 175

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            MI    R+ R    V + E + E+G +    T+ SL+ AY                REG
Sbjct: 176 TMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYA---------------REG 220

Query: 158 R--RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
           R  + +C  +          E+EG                         +P  +  N+ I
Sbjct: 221 RYEKAMCLFV--------GMEDEG------------------------CIPDLYTYNTVI 248

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
                 G   E          G     +     PD VTY T++ A  K     RAR +L 
Sbjct: 249 DMCGRGGLFAEAE--------GVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLK 300

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M R G   +  TYNILL    +     +A ++  E+   A   P++VS++ LI+ +  +
Sbjct: 301 TMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHEL-KAAGHSPNLVSFSALINMYGRL 359

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
                A   + EMRA G  P   +Y  LM +++
Sbjct: 360 GYFEEAERAWVEMRATGCVPNATAYCGLMNSYS 392


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 197/464 (42%), Gaps = 41/464 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+   + T+V  +   GD   V ++ L       +RK  +   +S  KP+   
Sbjct: 204 MVEDGLQPNQITYGTIVDGMCKIGD--TVSALNL-------LRKMEE---MSHIKPNVVI 251

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A+++     G+      L+ +M E G  PD+ TYN MI     + R      +L+ +L
Sbjct: 252 YSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEML 311

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I   + T+ +L+ AYV       AE +   M         I     ++ +  +N   
Sbjct: 312 ERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNR-- 369

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D  + +F               +  K  +P+   + TL+ GY    R+ D   +L  M 
Sbjct: 370 LDAAEHMFY-------------VMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM- 415

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +     D  TY T++      G ++ A  +  +M   GV  + +T N LL G C   
Sbjct: 416 --TETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 473

Query: 301 QIDKAKELLREMAD-----DAK-----IEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           ++  A E+ + M       DA      +EPDV +YNILI G I       A   + EM  
Sbjct: 474 KLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPH 533

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI P  I+Y++++      S+   A ++FD M        D+V +N LV GYC+ G V+
Sbjct: 534 RGIVPNTITYSSMINGLCKQSRLDEATQMFDSM-GSKSFSPDVVTFNTLVSGYCKAGRVD 592

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +   +   M   G   +  TY +L +G         AL +++E+
Sbjct: 593 DGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEM 636



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 192/417 (46%), Gaps = 40/417 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   ++ +L+      +  + L LF QM     +P+V+T+  ++    R  R    V 
Sbjct: 144 QPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVA 199

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+R++E G+     T+ ++V      GD   A  +++ M E       ++    + D  
Sbjct: 200 LLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIID-G 258

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G   D   ++ ++         E  + P  F      Y  ++ G+ + GR S+  R
Sbjct: 259 LWKDGRHSDAHNLYTEM--------QEKGIFPDLFT-----YNCMIDGFCSSGRWSEAQR 305

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++ N   P+ VTY+ +++A VK      A ++  EM   G+  N ITYN ++ 
Sbjct: 306 LLQEMLERKIN---PNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMID 362

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRAR 351
           G+C+Q ++D A+ +   MA      PDV ++N LIDG+     IDD    L   +EM   
Sbjct: 363 GFCKQNRLDAAEHMFYVMATKG-CSPDVFTFNTLIDGYCGAKRIDDGTELL---HEMTET 418

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+     +Y TL+  F L      A  +  +M+    V  DIV  N L++G C  G +++
Sbjct: 419 GLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG-VCPDIVTCNTLLDGLCDNGKLKD 477

Query: 412 AKRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           A  + + M++           NG  P+V TY  L +G+    K  EA  L+KE+  R
Sbjct: 478 ALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHR 534



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/497 (21%), Positives = 207/497 (41%), Gaps = 57/497 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N ++     + +P   + L+ +M       DV ++N++IK     S+    +  
Sbjct: 75  PSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALST 134

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             +I ++G    + TF +L+       +  ++E +    +  R +V      ++      
Sbjct: 135 FGKITKLGFQPDVVTFSTLLHGLCV--EDRVSEALDLFHQMCRPNVVTFTTLMN----GL 188

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   + ++++ + + P             N   Y T++ G     ++ DTV  
Sbjct: 189 CREGRVVEAVALLDRMVEDGLQP-------------NQITYGTIVDGMC---KIGDTVSA 232

Query: 236 LGAMRRQEDNASH--PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           L  +R+ E+  SH  P+ V Y+ ++  L K G    A  +  EM   G+  +  TYN ++
Sbjct: 233 LNLLRKMEE-MSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C   +  +A+ LL+EM +  KI P+VV+Y+ LI+ ++       A   ++EM  RGI
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLE-RKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGI 350

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  I+Y +++  F   ++   A  +F  ++       D+  +N L++GYC    +++  
Sbjct: 351 IPNTITYNSMIDGFCKQNRLDAAEHMF-YVMATKGCSPDVFTFNTLIDGYCGAKRIDDGT 409

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------CEVKKEGV 465
            ++  M E G   +  TY +L +G  L      AL L +++           C    +G+
Sbjct: 410 ELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 469

Query: 466 NADSDLPPPLK----------------------PDEELLDALADICVRAAFFRKALEIVA 503
             +  L   L+                      PD +  + L    +    F +A E+  
Sbjct: 470 CDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYK 529

Query: 504 CMEEHGIPPNKTKYKKI 520
            M   GI PN   Y  +
Sbjct: 530 EMPHRGIVPNTITYSSM 546



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 14/339 (4%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  YN++++      +      +F  M   G  PDV T+N +I     A R      +
Sbjct: 352 PNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTEL 411

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC-KIIRELDLEDYS 174
           L  + E G+    TT+ +L+  +   GDL  A  + Q M      VC  I+    L D  
Sbjct: 412 LHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISS--GVCPDIVTCNTLLDGL 469

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N G   D  E+F+ +  + ++  +  P       P+ + Y  L+ G +NEG+  +   
Sbjct: 470 CDN-GKLKDALEMFKAMQKSKMDLDASRPF--NGVEPDVQTYNILISGLINEGKFLEAEE 526

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      P+ +TY+++++ L K   +D A Q+   M       + +T+N L+ 
Sbjct: 527 LYKEMPHR---GIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVS 583

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+  ++D   EL  EM     I  D ++Y  LI GF  + +  GAL  F EM + G+ 
Sbjct: 584 GYCKAGRVDDGLELFCEMGRRG-IVADAITYITLIHGFRKVGNINGALDIFQEMISSGVY 642

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           P  I+  +++    L S+ +L   V   ML D ++ +D+
Sbjct: 643 PDTITIRSMLT--VLWSKEELKRAV--AMLEDLQMSMDL 677



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 162/380 (42%), Gaps = 38/380 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
            P+   Y+A++NA     K +KF +   L+D+M   G  P+ +TYN MI    + +R   
Sbjct: 316 NPNVVTYSALINAYV---KERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDA 372

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              +   +   G +  + TF +L+  Y G   ++    ++  M E            D  
Sbjct: 373 AEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVA-------DTT 425

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
            Y++   G            L   +N + +    ++     P+     TL+ G  + G++
Sbjct: 426 TYNTLIHG----------FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 475

Query: 230 SDTVRMLGAMRRQED--------NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
            D + M  AM++ +         N   PD  TY  ++S L+  G    A ++  EM   G
Sbjct: 476 KDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRG 535

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           +  N ITY+ ++ G C+Q ++D+A ++   M   +   PDVV++N L+ G+         
Sbjct: 536 IVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKS-FSPDVVTFNTLVSGYCKAGRVDDG 594

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L  F EM  RGI    I+Y TL+  F        A  +F EM+        I   +ML  
Sbjct: 595 LELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTV 654

Query: 402 GYCRMGLVEEAKRIIERMKE 421
            + +    EE KR +  +++
Sbjct: 655 LWSK----EELKRAVAMLED 670



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 21/253 (8%)

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            ++ A  + ++M R     + I +N L+    +  + D    L ++M +  +I  DV S+
Sbjct: 57  GLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKM-ERKQIPCDVYSF 115

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           NILI  F        AL+ F ++   G  P  ++++TL+    +  +   A  +F +M R
Sbjct: 116 NILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCR 175

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
                 ++V +  L+ G CR G V EA  +++RM E+G  PN  TYG++ +G+       
Sbjct: 176 P-----NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTV 230

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
            AL L ++++E   +               KP+  +  A+ D   +      A  +   M
Sbjct: 231 SALNLLRKMEEMSHI---------------KPNVVIYSAIIDGLWKDGRHSDAHNLYTEM 275

Query: 506 EEHGIPPNKTKYK 518
           +E GI P+   Y 
Sbjct: 276 QEKGIFPDLFTYN 288



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 23/191 (12%)

Query: 331 GFILIDDSAGALTFFNEM-RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           GF  I     A+  F++M R+R + P+ I +  LM       +P L   ++ +M R  ++
Sbjct: 51  GFHEIKGLEDAIDLFSDMVRSRPL-PSVIDFNKLMGVVVRMERPDLVISLYQKMER-KQI 108

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D+ ++N+L++ +C    +  A     ++ + GF P+V T+ +L +G+ +  +  EAL 
Sbjct: 109 PCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALD 168

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L+ ++                     +P+      L +   R     +A+ ++  M E G
Sbjct: 169 LFHQM--------------------CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG 208

Query: 510 IPPNKTKYKKI 520
           + PN+  Y  I
Sbjct: 209 LQPNQITYGTI 219


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 144/568 (25%), Positives = 246/568 (43%), Gaps = 61/568 (10%)

Query: 6   YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSD------------ 53
           Y   V +++++++ L  +G  G V  ++L  +++K     +D   V D            
Sbjct: 119 YKHSVYSYASLLTLLINNGYVGVVFKIRL--LMIKSCDSVADTLFVLDLCRKMNKDESFE 176

Query: 54  --SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
              K     YN +LN+ A  G   +  Q++ +M E    P++ TYN M+    +      
Sbjct: 177 LKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEE 236

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRD---VCKIIR 166
               +  I+E G+     T+ SL+  Y    DL+ A  + + M  +  RR+      +I 
Sbjct: 237 ANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIH 296

Query: 167 ELDLE---DYSSENEGDDDDDD--------EVFEKLLPNSINPSSEPPLLP----KTFAP 211
            L +E   D + +      DDD         V  K L  S   S    L+     K   P
Sbjct: 297 GLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKP 356

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N   YT L+    ++ ++     +LG M  +      P+ +TY  +++   K G ++ A 
Sbjct: 357 NIHTYTVLIDSLCSQCKLEKARELLGQMLEK---GLMPNVITYNALINGYCKRGMIEDAL 413

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            V+  M    +  N  TYN L+KGYC++  + KA  +L +M +  K+ PDVV+YN LIDG
Sbjct: 414 DVVELMESRNLRPNTRTYNELIKGYCKR-NVHKAMGVLNKMLE-RKVLPDVVTYNSLIDG 471

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                +   A    + M  RG+ P   +YT+++ +   S + + A  +FD  L    V  
Sbjct: 472 QCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDS-LEQKDVIP 530

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           ++V +  L++GYC+ G V EA  ++E+M      PN  T+ +L +G+    K  EA LL 
Sbjct: 531 NVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLE 590

Query: 452 K---EIKERCEVKKEGV-------NADSD---------LPPPLKPDEELLDALADICVRA 492
           +   +I  +  V  + +       + D D         L    KPD            R 
Sbjct: 591 EKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCRE 650

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
              + A ++VA M+E+G+ P+   Y  +
Sbjct: 651 GRLQDAEDMVAKMKENGVSPDLFTYSSL 678



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 207/485 (42%), Gaps = 53/485 (10%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHL 111
           D  P    Y  ++ A     +  + L L  +M E G KP++ TY V+I  LC++   +  
Sbjct: 318 DCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKA 377

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELD 169
              +L ++LE G+   + T+ +L+  Y   G +E A  +V+ M E R  R   +   EL 
Sbjct: 378 RE-LLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELM-ESRNLRPNTRTYNEL- 434

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           ++ Y   N         V + +    +N   E  +LP         Y +L+ G    G  
Sbjct: 435 IKGYCKRN---------VHKAM--GVLNKMLERKVLPDVVT-----YNSLIDGQCRSGNF 478

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
               R+L  M    D    PD  TYT+++ +L K+  ++ A  +   + +  V  N + Y
Sbjct: 479 DSAYRLLSLMN---DRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMY 535

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
             L+ GYC+  ++++A  +L +M     + P+ +++N LI G         A     +M 
Sbjct: 536 TALIDGYCKAGKVNEAHLMLEKMLSKNCL-PNSLTFNALIHGLCTDGKLKEATLLEEKMV 594

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              + PT  + T L+           A + F +ML     K D   +   ++ YCR G +
Sbjct: 595 KIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSG-TKPDAHTYTTFIQTYCREGRL 653

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           ++A+ ++ +MKENG  P++ TY SL  G     +   A ++ K +             D+
Sbjct: 654 QDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMH------------DT 701

Query: 470 DLPPPLKPDEELLDALAD------------ICVRAAF--FRKALEIVACMEEHGIPPNKT 515
              P       L+  L +            +CV +    F   +E++  M EHG+ PN  
Sbjct: 702 GCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAK 761

Query: 516 KYKKI 520
            Y+K+
Sbjct: 762 SYEKL 766



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 104/490 (21%), Positives = 197/490 (40%), Gaps = 85/490 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML    LP V  +++++     SG+         FD   + +   +D  +V    PD   
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGN---------FDSAYRLLSLMNDRGLV----PDPWT 499

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y +++++     + ++   LFD + +    P+V+ Y  +I    +A + +    +LE++L
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKML 559

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                    TF +L+      G L+ A  + + M   + D+   +    +  +    +GD
Sbjct: 560 SKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMV--KIDLQPTVSTDTILIHRLLKDGD 617

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D     F+++L +   P             ++  YTT ++ Y  EGR+ D   M+  M+
Sbjct: 618 FDHAYRRFQQMLSSGTKP-------------DAHTYTTFIQTYCREGRLQDAEDMVAKMK 664

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK------ 294
              +N   PD  TY++++      G  + A  VL  M   G   ++ T+  L+K      
Sbjct: 665 ---ENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMK 721

Query: 295 ---------GYC---QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
                    G C     ++ D   ELL +M +   + P+  SY  L+ G   I +   A 
Sbjct: 722 YGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHG-VTPNAKSYEKLMLGICEIGNLRVAE 780

Query: 343 TFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEM--------LRDPRVKV-- 391
             F+ M+ + GI+P+++ +  L+       +   A KV D+M        L   ++ +  
Sbjct: 781 KVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICR 840

Query: 392 ------------------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                                   D +AW ++++G  + GLVE    +   M++NG   +
Sbjct: 841 LYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFS 900

Query: 428 VATYGSLANG 437
             TY  L  G
Sbjct: 901 SQTYSLLIEG 910



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 111/539 (20%), Positives = 217/539 (40%), Gaps = 83/539 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+   YNA++N     G  +  L + + M     +P+  TYN +IK  C R   K +   
Sbjct: 391 PNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAM--G 448

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR------------DVC 162
           VL ++LE  +   + T+ SL+      G+ + A  ++  M +                +C
Sbjct: 449 VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLC 508

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSR 214
           K  R  +  D     E  D   + V    L +    + +          +L K   PNS 
Sbjct: 509 KSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSL 568

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            +  L+ G   +G++ +   +   M + +     P   T T ++  L+K G  D A +  
Sbjct: 569 TFNALIHGLCTDGKLKEATLLEEKMVKID---LQPTVSTDTILIHRLLKDGDFDHAYRRF 625

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M   G   +  TY   ++ YC++ ++  A++++ +M ++  + PD+ +Y+ LI G+  
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENG-VSPDLFTYSSLIKGYGD 684

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV--D 392
           +  +  A      M   G  P++ ++ +L+K        K+          +P V V  +
Sbjct: 685 LGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGG-------EPGVCVMSN 737

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           ++ ++++VE             ++E+M E+G  PN  +Y  L  GI        A  ++ 
Sbjct: 738 MMEFDIVVE-------------LLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFD 784

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
            +++     KEG++          P E + +AL   C +     +A ++V  M   G  P
Sbjct: 785 HMQQ-----KEGIS----------PSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLP 829

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSE--WRL 569
                K +   ++               ++ E++R    F+  L     YY  E  W++
Sbjct: 830 QLESCKILICRLY---------------KKGEKERGTSVFQNLLQC--GYYDDELAWKI 871


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 217/498 (43%), Gaps = 86/498 (17%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P +K  + ++S L  + +         F+   +  R  S+      + PD  ++ 
Sbjct: 202 RKGTFPSLKTCNFLLSSLVKANE---------FEKCCEVFRVMSE-----GACPDVFSFT 247

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-----------------KLCAR 105
            V+NA    GK +  ++LF +M + G  P+V+TYN +I                 K+  +
Sbjct: 248 NVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVK 307

Query: 106 ASRKHLLVF------------------VLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
             + +L  +                  VL+ ++  G    +  F +L+  Y   G++E A
Sbjct: 308 GVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGA 367

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE----VFEKLLPN--SINPSS- 200
             I   M      + K I    +  YS        D  E      E++L +  SI+P + 
Sbjct: 368 LKIKDVM------ISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNC 421

Query: 201 -------------------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                                 +L + F P+  + T L+ G   +G+  +   +     R
Sbjct: 422 YSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATEL---WFR 478

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             +  S    VT   ++  L  AG +  A +++ EM   G+P +RITYN L+ G+C + +
Sbjct: 479 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 538

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ++    L  EM     I+PD+ +YN L+ G   +     A+  ++E +A G+     +Y 
Sbjct: 539 VEGCFRLREEMTKRG-IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYG 597

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            +M+ +  +++ +    +F+E+L   +++++ + +N++++ +C+ G V  A +++E MK 
Sbjct: 598 IMMEGYCKANRIEDVENLFNELL-SKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKS 656

Query: 422 NGFYPNVATYGSLANGIS 439
            G  PN ATY SL +G+ 
Sbjct: 657 KGILPNCATYSSLIHGVC 674



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 144/311 (46%), Gaps = 19/311 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   YNA++    N GK +   +L ++M + G +PD+ TYN +++      +    + + 
Sbjct: 522 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLW 581

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           +     G+   + T+  ++  Y     +E  E +   +   + ++  I+  + ++ +   
Sbjct: 582 DEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHC-- 639

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                + +     +LL N         +  K   PN   Y++L+ G  N G V D   ++
Sbjct: 640 ----QNGNVAAALQLLEN---------MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 686

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             MR++      P+ V YT ++    K G MD A     EM    +  N+ TY +++ GY
Sbjct: 687 DEMRKE---GFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 743

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   ++KA  LL +M +   I PDVV+YN+L +GF   +D   A    ++M   G+   
Sbjct: 744 CKLGNMEKANNLLIKMKESG-IVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVD 802

Query: 357 KISYTTLMKAF 367
           +I+YTTL+  +
Sbjct: 803 EITYTTLVHGW 813



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 204/499 (40%), Gaps = 77/499 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P++K +  +++ L           +  FD    +V    D  I S   P+   
Sbjct: 304 MTVKGVQPNLKTYGALINGLI---------KLNFFD----KVNHVLDEMIGSGFNPNVVV 350

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT-YNVMIKLCARASRKHLLVFVLERI 119
           +N +++    +G  +  L++ D M      P  +T Y++M   C     +H     LE I
Sbjct: 351 FNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHA-ENALEEI 409

Query: 120 LEMGITL----CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD----------VCKII 165
           L  G+++    C +    L   +         + ++   R  R            +CK  
Sbjct: 410 LSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLS--RNFRPSDLLLTMLVCGLCKDG 467

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSRIYT 217
           + L+  +             +V    L + +  + + P        +L +    +   Y 
Sbjct: 468 KHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYN 527

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ G+ NEG+V    R+   M ++      PD  TY  ++  L   G +D A ++  E 
Sbjct: 528 ALILGFCNEGKVEGCFRLREEMTKR---GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEF 584

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              G+ +N  TY I+++GYC+  +I+  + L  E+    K+E + + YNI+I       +
Sbjct: 585 KASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSK-KMELNSIVYNIIIKAHCQNGN 643

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK------- 390
            A AL     M+++GI P   +Y++L+         + A  + DEM ++  V        
Sbjct: 644 VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA 703

Query: 391 ------------------VDIVAWNM---------LVEGYCRMGLVEEAKRIIERMKENG 423
                             ++++++N+         +++GYC++G +E+A  ++ +MKE+G
Sbjct: 704 LIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESG 763

Query: 424 FYPNVATYGSLANGISLAR 442
             P+V TY  L NG   A 
Sbjct: 764 IVPDVVTYNVLTNGFCKAN 782



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 170/374 (45%), Gaps = 36/374 (9%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA-----RASRKHLLVFVLERILEMGIT 125
           GK  +  +L+ ++ E G+    +T N +I  LC       ASR      +++ +LE G+ 
Sbjct: 467 GKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASR------IVKEMLERGLP 520

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
           +   T+ +L+  +   G +E    + + M   +R +   I   +       N G  DD  
Sbjct: 521 MDRITYNALILGFCNEGKVEGCFRLREEMT--KRGIQPDIYTYNFLLRGLCNVGKLDDAI 578

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM--RRQE 243
           +++++   + +               N   Y  +M+GY    R+ D   +   +  ++ E
Sbjct: 579 KLWDEFKASGL-------------ISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKME 625

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
            N+     + Y  ++ A  + G++  A Q+L  M   G+  N  TY+ L+ G C    ++
Sbjct: 626 LNS-----IVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVE 680

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            AK L+ EM  +  + P+VV Y  LI G+  +     A + + EM +  I P K +YT +
Sbjct: 681 DAKHLIDEMRKEGFV-PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVM 739

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +  +      + AN +  +M ++  +  D+V +N+L  G+C+   ++ A ++ ++M   G
Sbjct: 740 IDGYCKLGNMEKANNLLIKM-KESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEG 798

Query: 424 FYPNVATYGSLANG 437
              +  TY +L +G
Sbjct: 799 LPVDEITYTTLVHG 812



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 15/139 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS-DSKPDTA 59
           M + G++P+V  ++ ++      G     ES  L              +++S +  P+  
Sbjct: 689 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL--------------EMISFNIHPNKF 734

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y  +++    LG  +K   L  +M E G  PDV+TYNV+     +A+       V +++
Sbjct: 735 TYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQM 794

Query: 120 LEMGITLCMTTFQSLVAAY 138
              G+ +   T+ +LV  +
Sbjct: 795 ATEGLPVDEITYTTLVHGW 813


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 191/407 (46%), Gaps = 23/407 (5%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  KP+   Y+ ++ A A+ G+ ++  +L D M   G  PD+  YN +I   ++A +   
Sbjct: 467 SGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 526

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDL 170
               L  I   G+     TF + +  Y   G + E A+   + +  G      +   L  
Sbjct: 527 ASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 586

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             + +   G+  +   +F +L    +              P+ +  +  + G +  GRV 
Sbjct: 587 GHFKA---GNLMEALSIFRRLHALGV-------------LPDVQTCSAFIHGLLKNGRVQ 630

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +++   ++ +      PD  TY++++S   K G +++A ++  EM   G+  N   YN
Sbjct: 631 EALKVFSELKEK---GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 687

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ G C+   I +A++L   M +   +EPD V+Y+ +IDG+   ++ A A + F+EM +
Sbjct: 688 ALVDGLCKSGDIQRARKLFDGMPEKG-LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 746

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+ P    Y  L+         + A  +F EML+        +++N L++GYC+   ++
Sbjct: 747 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT--LSFNTLIDGYCKSCKIQ 804

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA ++ + M      P+  TY ++ +    A K  EA LL+KE++ER
Sbjct: 805 EASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 851



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 198/454 (43%), Gaps = 34/454 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P+V  +S ++   A+ G              ++  R+  D    S   PD   
Sbjct: 464 MTFSGLKPNVVVYSILIMAYASEGR-------------IEEARRLLDGMSCSGVAPDIFC 510

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA+++  +  GK ++      ++   G KPD +T+   I   ++  +        + +L
Sbjct: 511 YNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 570

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+      +  L+  +   G+L  A +I +  R     V   ++      +     G 
Sbjct: 571 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFR--RLHALGVLPDVQTCSAFIHGLLKNGR 628

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  +VF +L         E  L+P  F      Y++L+ G+  +G V     +   M 
Sbjct: 629 VQEALKVFSEL--------KEKGLVPDVFT-----YSSLISGFCKQGEVEKAFELHDEMC 675

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+   Y  +V  L K+G + RAR++   M   G+  + +TY+ ++ GYC+  
Sbjct: 676 LK---GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 732

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            + +A  L  EM     ++P    YN L+ G     D   A+  F EM  +G A T +S+
Sbjct: 733 NVAEAFSLFHEMPSKG-VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT-LSF 790

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            TL+  +  S + + A+++F EM+   ++  D V +  +++ +C+ G +EEA  + + M+
Sbjct: 791 NTLIDGYCKSCKIQEASQLFQEMIA-KQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 849

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           E     +  TY SL  G +   +  E   L++++
Sbjct: 850 ERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 883



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 125/565 (22%), Positives = 230/565 (40%), Gaps = 97/565 (17%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+   +S V+  +   GD          D  V+  R   +  +V    P+T  Y  +
Sbjct: 258 GLNPNEFIYSLVIEGMCQVGD---------IDEAVELKRSMGEKGLV----PNTYTYTII 304

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
                   +  +    F++M + G KPD    + +I    R      ++ + + ++  GI
Sbjct: 305 TAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGI 364

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDLEDYSSE-NE 178
            + + T+  L+     FG +E A  I++ M     +   R  C +I     E Y  E N 
Sbjct: 365 PINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLI-----EGYCREHNM 419

Query: 179 GDDDDDDEVFEK--LLPNSI-------------NPSSEPPLLPK-TFA---PNSRIYTTL 219
           G   +  +  EK  L+P+++             + S    LL K TF+   PN  +Y+ L
Sbjct: 420 GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSIL 479

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +  Y +EGR+ +  R+L  M     +   PD   Y  ++S L KAG M+ A   L E+  
Sbjct: 480 IMAYASEGRIEEARRLLDGMSC---SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQG 536

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA----------------------- 316
            G+  + +T+   + GY +  ++ +A +   EM D                         
Sbjct: 537 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 596

Query: 317 -----------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
                       + PDV + +  I G +       AL  F+E++ +G+ P   +Y++L+ 
Sbjct: 597 ALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS 656

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            F    + + A ++ DEM     +  +I  +N LV+G C+ G ++ A+++ + M E G  
Sbjct: 657 GFCKQGEVEKAFELHDEMCLKG-IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 715

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           P+  TY ++ +G   +    EA  L+ E+  +                 ++P   + +AL
Sbjct: 716 PDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK----------------GVQPHSFVYNAL 759

Query: 486 ADICVRAAFFRKALEIVACMEEHGI 510
              C +     KA+ +   M + G 
Sbjct: 760 VHGCCKEGDMEKAMNLFREMLQKGF 784



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 184/421 (43%), Gaps = 36/421 (8%)

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           N ++K   +     L   V   +L+  +   + T+  LV A    GDL  A+ ++  M E
Sbjct: 197 NSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDE 256

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
              +  + I  L +E           D DE  E  L  S+          K   PN+  Y
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVG-----DIDEAVE--LKRSMGE--------KGLVPNTYTY 301

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T +  G     R+++       M++       PD+   + ++   ++ G +D   ++   
Sbjct: 302 TIITAGLCRAKRMNEAKLTFEEMQK---TGLKPDYNACSALIDGFMREGDIDEVLRIKDV 358

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+P N ITYN+L+ G C+  +++KA E+L+ M      +P+  ++ +LI+G+    
Sbjct: 359 MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMV-TLGCKPNSRTFCLLIEGYCREH 417

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   AL   +EM  R + P+ +SY  ++          LANK+ ++M     +K ++V +
Sbjct: 418 NMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG-LKPNVVVY 476

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           ++L+  Y   G +EEA+R+++ M  +G  P++  Y ++ + +S A K  EA     EI+ 
Sbjct: 477 SILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQG 536

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           R                 LKPD     A      +     +A +    M +HG+ PN   
Sbjct: 537 R----------------GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 580

Query: 517 Y 517
           Y
Sbjct: 581 Y 581



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 197/461 (42%), Gaps = 47/461 (10%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            ML  G +P+   ++ +++    +G+   +E++ +F       R+     ++    PD   
Sbjct: 569  MLDHGLMPNNPLYTVLINGHFKAGN--LMEALSIF-------RRLHALGVL----PDVQT 615

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
             +A ++     G+ ++ L++F ++ E G  PDV TY+ +I   C +   +       E  
Sbjct: 616  CSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMC 675

Query: 120  LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS-SENE 178
            L+ GI   +  + +LV      GD++ A  +   M E   +   +     ++ Y  SEN 
Sbjct: 676  LK-GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENV 734

Query: 179  GDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIY 216
             +      +F ++    + P S                         +L K FA  +  +
Sbjct: 735  AEAFS---LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSF 790

Query: 217  TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             TL+ GY    ++ +  ++   M  ++     PDHVTYTTV+    KAG M+ A  +  E
Sbjct: 791  NTLIDGYCKSCKIQEASQLFQEMIAKQ---IMPDHVTYTTVIDWHCKAGKMEEANLLFKE 847

Query: 277  MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
            M    +  + +TY  L+ GY +  Q  +   L  +M     ++PD V+Y ++I      D
Sbjct: 848  MQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG-VKPDEVTYGLVIYAHCKED 906

Query: 337  DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
            +   A    +E+  +G+      +  L+ A         A+K+ DEM  +  +K  + A 
Sbjct: 907  NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM-GELGLKPSLAAC 965

Query: 397  NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            N LV  +   G ++EA R+ E +K  G  P+  T   L NG
Sbjct: 966  NTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 1006



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 66/370 (17%), Positives = 135/370 (36%), Gaps = 76/370 (20%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M   G  P++  ++ +V  L  SGD             ++R RK  D       +PD+  
Sbjct: 674  MCLKGIAPNIFIYNALVDGLCKSGD-------------IQRARKLFDGMPEKGLEPDSVT 720

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            Y+ +++         +   LF +M   G +P    YN ++  C +       + +   +L
Sbjct: 721  YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 780

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--------------------REGRRD 160
            + G    ++ F +L+  Y     ++ A  + Q M                    + G+ +
Sbjct: 781  QKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 839

Query: 161  VCKII------RELDLED-------YSSENEGDDDDDDEVFEKLLPNSINP--------- 198
               ++      R L ++        Y     G   +   +FEK++   + P         
Sbjct: 840  EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 899

Query: 199  --SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED--NASH------ 248
                +   L + F     +   + KG + +G + D   ++ A+ ++ED   AS       
Sbjct: 900  YAHCKEDNLVEAFKLRDEV---VGKGMLTKGTIHDL--LITALCKREDLTEASKLLDEMG 954

Query: 249  -----PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                 P      T+V +  +AG MD A +V   +  +G+  +  T   L+ G       +
Sbjct: 955  ELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSE 1014

Query: 304  KAKELLREMA 313
             A+ L++++ 
Sbjct: 1015 DARNLIKQLV 1024


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/487 (22%), Positives = 220/487 (45%), Gaps = 43/487 (8%)

Query: 56  PDTAAYNAVLNAC--ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           P    +N +L +   AN       + L  Q+   G  P ++T+N+++             
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAF 114

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA----ETIVQ--------AMREGRRDV 161
            +  +IL++G      TF +L+      G L+ A    + ++         + R     +
Sbjct: 115 SIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGL 174

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           CKI           + EG   + D V   ++ NS+               ++ K  +P+ 
Sbjct: 175 CKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDV 234

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             + +L+ G+   G++ +   +   M  +  N   PD  T++ +V AL K G++ RA+ +
Sbjct: 235 VTFNSLILGFCVVGQLKEAFGLFHEMVLKNIN---PDVYTFSILVDALCKDGNITRAKNM 291

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA M + GV  + +TY+ L+ GYC   +++KAK +   M+    + P   SYNI+I+G  
Sbjct: 292 LAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMS-RLGVAPHAHSYNIMINGLG 350

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            I     AL+ F EM  +GIAP  ++Y +L+       +   A ++ DEM  +  +  DI
Sbjct: 351 KIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEM-HNNGIPADI 409

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           + +N L++  C+   +++A  +++++K+ G  P++ TY  L +G+    +   A    ++
Sbjct: 410 LTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNA----QD 465

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           + +   +K   VNA +             + + +   +   F +A  +++ ME +GI P+
Sbjct: 466 VFQDLLIKGYSVNAWT------------YNIMINGLCKEGLFNEAEVLLSKMENNGIIPD 513

Query: 514 KTKYKKI 520
              Y+ I
Sbjct: 514 AVTYETI 520



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 138/338 (40%), Gaps = 56/338 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARAS---RKHL 111
           PD   +N+++     +G+ K+   LF +M      PDV T+++++  LC   +    K++
Sbjct: 232 PDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNM 291

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           L  ++++    G+   + T+ SL+  Y    ++  A+ +   M   R  V       ++ 
Sbjct: 292 LAVMMKQ----GVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTM--SRLGVAPHAHSYNIM 345

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                     D+   +F+++    I             AP++  Y +L+ G    GR+S 
Sbjct: 346 INGLGKIKMVDEALSLFKEMCCKGI-------------APDTVTYNSLIDGLCKLGRISY 392

Query: 232 TVRMLGAM--------------------------------RRQEDNASHPDHVTYTTVVS 259
             +++  M                                ++ +D    P   TY  ++ 
Sbjct: 393 AWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILID 452

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L K G +  A+ V  ++   G   N  TYNI++ G C++   ++A+ LL +M ++  I 
Sbjct: 453 GLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGII- 511

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           PD V+Y  +I      D++  A     EM  RG+   K
Sbjct: 512 PDAVTYETIIRALFRKDENEKAEKLLREMIIRGLLLCK 549



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 66/282 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  PH  +++ +++ L           +K+ D  +   ++     I     PDT  
Sbjct: 330 MSRLGVAPHAHSYNIMINGLG---------KIKMVDEALSLFKEMCCKGIA----PDTVT 376

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++    LG+     QL D+MH  G   D+LTYN +I +  +       + ++++I 
Sbjct: 377 YNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIK 436

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI   M T+  L+      G L+ A+ + Q                            
Sbjct: 437 DQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQ---------------------------- 468

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                  LL K ++ N+  Y  ++ G   EG  ++   +L  M 
Sbjct: 469 ----------------------DLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKM- 505

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
             E+N   PD VTY T++ AL +    ++A ++L EM   G+
Sbjct: 506 --ENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGL 545


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 199/465 (42%), Gaps = 77/465 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L+A   +      L L  ++     + DV  +N++I   +R  R      V
Sbjct: 82  PCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSV 141

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +I+++G      TF SL+        L   +   +AM                     
Sbjct: 142 LGKIIKLGFEPDAVTFSSLING------LCFEDKFARAM--------------------- 174

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                     E F++++ +              + PN   Y T++KG+   G+ +  V  
Sbjct: 175 ----------EFFDEMVASG-------------YQPNLHTYNTIIKGFCKIGKTTVAV-- 209

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G +++ +     PD V Y T++  L K   +  A  + +E+   GV  +  TY+IL+ G
Sbjct: 210 -GLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHG 268

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
            C   Q ++A  L  EM     I PDVV++NIL+D      ++ ++ G +    E   +G
Sbjct: 269 LCNSDQKEEASALFNEMMS-LNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIE---KG 324

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P   +Y +LM  + L ++   A  VFD M+    +  ++V++N+L+ GYC+   ++EA
Sbjct: 325 VEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMP-NVVSYNILINGYCKAQRIDEA 383

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           + + + M   G  PN   Y +L +G+  A +  EA  L+K+++ +               
Sbjct: 384 RELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQ------------GCS 431

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           P L     LLD+L     +  +   AL +   M++  + PN   Y
Sbjct: 432 PDLVTCTILLDSLC----KLGYLDNALRLFRAMQDSCLKPNLVTY 472



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 169/377 (44%), Gaps = 55/377 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   +++++N      K  + ++ FD+M   G +P++ TYN +IK   +  +  + V 
Sbjct: 151 EPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVG 210

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+++ + G                G  D+ I  TI+  +       CK           
Sbjct: 211 LLKKMDKAG----------------GRPDIVIYNTIIDGL-------CK----------- 236

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                         ++L+  +++  SE  +  K   P+   Y+ LM G  N  +  +   
Sbjct: 237 --------------DRLVSEALDIFSE--IKGKGVRPDVFTYSILMHGLCNSDQKEEASA 280

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M         PD VT+  +V  L K G +  A+ ++  M   GV  N  TYN L+ 
Sbjct: 281 LFNEMMSLN---IMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMN 337

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC Q ++ +A+ +   M     + P+VVSYNILI+G+        A   F+EM  RG+ 
Sbjct: 338 GYCLQNKVFEARMVFDAMITKGCM-PNVVSYNILINGYCKAQRIDEARELFDEMSFRGLI 396

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   +Y TL+     + +   A ++F +M +      D+V   +L++  C++G ++ A R
Sbjct: 397 PNTFNYNTLISGLCQAGRHCEARELFKDM-QAQGCSPDLVTCTILLDSLCKLGYLDNALR 455

Query: 415 IIERMKENGFYPNVATY 431
           +   M+++   PN+ TY
Sbjct: 456 LFRAMQDSCLKPNLVTY 472



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 157/373 (42%), Gaps = 46/373 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ G+ P    +S++++ L              F+    R  +F D  + S  +P+   
Sbjct: 145 IIKLGFEPDAVTFSSLINGLC-------------FEDKFARAMEFFDEMVASGYQPNLHT 191

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCA-RASRKHLLVFVLER 118
           YN ++     +GK    + L  +M + G +PD++ YN +I  LC  R   + L +F    
Sbjct: 192 YNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIF--SE 249

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCK---IIRELDLEDY 173
           I   G+   + T+  L+         E A  +   M       DV     ++ +L  E  
Sbjct: 250 IKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGM 309

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            SE +G                        ++ K   PN   Y +LM GY  + +V +  
Sbjct: 310 LSEAQG--------------------IIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEAR 349

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +  AM  +      P+ V+Y  +++   KA  +D AR++  EM+  G+  N   YN L+
Sbjct: 350 MVFDAMITK---GCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLI 406

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G CQ  +  +A+EL ++M       PD+V+  IL+D    +     AL  F  M+   +
Sbjct: 407 SGLCQAGRHCEARELFKDMQAQG-CSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCL 465

Query: 354 APTKISYTTLMKA 366
            P  ++Y  L++A
Sbjct: 466 KPNLVTYDILIRA 478



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 111/247 (44%), Gaps = 27/247 (10%)

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +K Y   L + K  ELLR       IE DV  +NILI+ F  +     A +   ++   G
Sbjct: 97  IKHYGTVLSLSKRIELLR-------IERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLG 149

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  +++++L+       +   A + FDEM+     + ++  +N +++G+C++G    A
Sbjct: 150 FEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASG-YQPNLHTYNTIIKGFCKIGKTTVA 208

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------------- 457
             ++++M + G  P++  Y ++ +G+   R   EAL ++ EIK +               
Sbjct: 209 VGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHG 268

Query: 458 -CEV-KKEGVNA--DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            C   +KE  +A  +  +   + PD    + L D   +     +A  I+  M E G+ PN
Sbjct: 269 LCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPN 328

Query: 514 KTKYKKI 520
              Y  +
Sbjct: 329 YATYNSL 335



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 128/312 (41%), Gaps = 47/312 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVVKRV---RK 44
           M+ SGY P++  ++T++      G               G    + +++ ++  +   R 
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRL 239

Query: 45  FSDP-DIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            S+  DI S+ K     PD   Y+ +++   N  + ++   LF++M      PDV+T+N+
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 99  MI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
           ++ KLC           +++ ++E G+     T+ SL+  Y     +  A  +  AM   
Sbjct: 300 LVDKLCKEGMLSEAQG-IIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITK 358

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDD---DDEVFEKLLPNSINPSSEPPLLPKT------ 208
                 +   + +  Y      D+     D+  F  L+PN+ N ++    L +       
Sbjct: 359 GCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEA 418

Query: 209 -----------FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                       +P+    T L+      G + + +R+  AM   +D+   P+ VTY  +
Sbjct: 419 RELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAM---QDSCLKPNLVTYDIL 475

Query: 258 VSALVKAGSMDR 269
           + A+ K+G + R
Sbjct: 476 IRAMYKSGKIYR 487



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 35/210 (16%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFA----LSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           AL  FN M  +   P  + +  L+ A        +   L+ ++  E+LR  R   D+  +
Sbjct: 68  ALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRI--ELLRIER---DVFHF 122

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE--- 453
           N+L+  + R+  V+ A  ++ ++ + GF P+  T+ SL NG+    K   A+  + E   
Sbjct: 123 NILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVA 182

Query: 454 -------------IKERCEVKKEGVNADSDLPPPL-----KPDEELLDALADICVRAAFF 495
                        IK  C++ K  V     L   +     +PD  + + + D   +    
Sbjct: 183 SGYQPNLHTYNTIIKGFCKIGKTTVAV--GLLKKMDKAGGRPDIVIYNTIIDGLCKDRLV 240

Query: 496 RKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
            +AL+I + ++  G+ P+   Y    + MH
Sbjct: 241 SEALDIFSEIKGKGVRPDVFTYS---ILMH 267


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 185/402 (46%), Gaps = 20/402 (4%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +  P+  +YN V++     G+  K   LF +M   G  PDV+TYN +I    +A      
Sbjct: 195 NCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKA 254

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           V +L+ + + G+     T+  ++  Y   G LE A  +++ M         +   L ++ 
Sbjct: 255 VAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQY 314

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           Y     G   +   VF+ ++              K   PNS IY  L+ GY  +G + D 
Sbjct: 315 YC--KIGRCAEARSVFDSMVR-------------KGQKPNSTIYHILLHGYATKGALIDV 359

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L  M R   +    +H  +  ++ A  K G++D+A     EM + G+  + ++Y+ +
Sbjct: 360 RDLLDLMIR---DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 416

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +   C+  +++ A     +M  +  + P+++S+  LI G   I +         EM  RG
Sbjct: 417 IHILCKTGRVEDAVYHFNQMVSEG-LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG 475

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P  I   T+M       +   A   FD M+    VK D+V++N L++GYC +G ++E+
Sbjct: 476 IHPDAIFMNTIMDNLCKEGRVVEAQDFFD-MVIHIGVKPDVVSYNTLIDGYCFVGKMDES 534

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + ++RM   G  P+  TY SL NG     +  +AL L++E+
Sbjct: 535 IKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREM 576



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 170/400 (42%), Gaps = 56/400 (14%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARA----SRKH---LLVFVLERILEMGITLCMTT 130
           L LFD++        V  +N ++ + ARA    S +H   L V +   ++  G+ +    
Sbjct: 34  LNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMMAAI 93

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
              L+  +   G L++A        +    V  +     ++     N   DD  D VF +
Sbjct: 94  IGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNR-TDDAMDMVFRR 152

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +          P L    + P+   Y  L+KG   E +  + + +L  M         P+
Sbjct: 153 M----------PEL---GYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPN 199

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            V+Y TV+    K G +D+A  +  EM   G+P + +TYN L+ G C+   +DKA  +L+
Sbjct: 200 VVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQ 259

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
            M D   + PD  +YNI+I G+  +     A+    +M   G+ P  ++Y+ L++ +   
Sbjct: 260 HMFDKG-VMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKI 318

Query: 371 SQPKLANKVFDEMLR------------------------DPRVKVDIV----------AW 396
            +   A  VFD M+R                        D R  +D++          A+
Sbjct: 319 GRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAF 378

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
           N+L+  Y + G V++A      M++NG  P+V +Y ++ +
Sbjct: 379 NILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIH 418



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 118/502 (23%), Positives = 206/502 (41%), Gaps = 105/502 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  +++++  L  +         +  D  V  ++   D  ++    PDT  
Sbjct: 226 MMGQGLPPDVVTYNSLIDGLCKA---------QAMDKAVAILQHMFDKGVM----PDTRT 272

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL------CARAS------- 107
           YN ++    +LG+ ++ ++L  +M   G +PDV+TY+++I+       CA A        
Sbjct: 273 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMV 332

Query: 108 RK---------HLLVF-------------VLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           RK         H+L+              +L+ ++  GI      F  L+ AY   G ++
Sbjct: 333 RKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD 392

Query: 146 IAETIVQAMREG--RRDV----------CKIIRELDLEDYSSENEGDDDDDDEVFEKLLP 193
            A T    MR+   R DV          CK  R  D   + ++          V E L P
Sbjct: 393 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQ---------MVSEGLSP 443

Query: 194 NSINPSS-----------------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVS------ 230
           N I+ +S                    ++ +   P++    T+M     EGRV       
Sbjct: 444 NIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFF 503

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D V  +G           PD V+Y T++      G MD + + L  M  IG+  +  TYN
Sbjct: 504 DMVIHIGV---------KPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYN 554

Query: 291 ILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
            LL GY +  +++ A  L REM   D K     ++ NI++ G         A   + +M 
Sbjct: 555 SLLNGYFKNGRVEDALALYREMFRKDVKFCA--ITSNIMLHGLFQAGRIVAARELYMKMV 612

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RG      +Y T++     +S    A ++F++ LR    ++D+  +++++    ++G +
Sbjct: 613 DRGTQLRIETYNTVLGGLCENSCVDEALRMFED-LRSKEFELDVRTFSIVINALLKVGRI 671

Query: 410 EEAKRIIERMKENGFYPNVATY 431
           +EAK +   M   G  P+V TY
Sbjct: 672 DEAKSLFSAMVLRGPVPDVITY 693



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 186/425 (43%), Gaps = 37/425 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP-DTA 59
           M+R G  P+   +  ++   A  G    ++   L D++++            D  P +  
Sbjct: 331 MVRKGQKPNSTIYHILLHGYATKG--ALIDVRDLLDLMIR------------DGIPFEHR 376

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           A+N ++ A A  G   K +  F +M + G +PDV++Y+ +I +  +  R    V+   ++
Sbjct: 377 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM 436

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +  G++  + +F SL+      G+ +  E +   M         I     +++     EG
Sbjct: 437 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLC--KEG 494

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              +  + F+ ++   + P                 Y TL+ GY   G++ ++++ L   
Sbjct: 495 RVVEAQDFFDMVIHIGVKPDVVS-------------YNTLIDGYCFVGKMDESIKQLD-- 539

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R       PD  TY ++++   K G ++ A  +  EM R  V    IT NI+L G  Q 
Sbjct: 540 -RMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQA 598

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +I  A+EL  +M D    +  + +YN ++ G         AL  F ++R++       +
Sbjct: 599 GRIVAARELYMKMVDRGT-QLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRT 657

Query: 360 YTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++ ++ A     +   A  +F  M LR P    D++ ++++++ +   GL+EE+  +   
Sbjct: 658 FSIVINALLKVGRIDEAKSLFSAMVLRGP--VPDVITYSLMIKSHIEEGLLEESDNLFLS 715

Query: 419 MKENG 423
           M++NG
Sbjct: 716 MEKNG 720



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 33/201 (16%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++      G +D A    A   + G     +T N L+KG C   + D A +++     + 
Sbjct: 97  LIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPEL 156

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
              PDV SYN LI G  +   S  AL     M A G                 +  P   
Sbjct: 157 GYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADG---------------GYNCSP--- 198

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
                          ++V++N +++G+ + G V++A  +   M   G  P+V TY SL +
Sbjct: 199 ---------------NVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLID 243

Query: 437 GISLARKPGEALLLWKEIKER 457
           G+  A+   +A+ + + + ++
Sbjct: 244 GLCKAQAMDKAVAILQHMFDK 264


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 221/483 (45%), Gaps = 42/483 (8%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            P    +  VL   A + K    + L+ +M   G   D+ ++ ++I    R SR  L + +
Sbjct: 602  PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 661

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            L +++++G    + T  SL+  +      + A ++V +M +G   V  ++    + +   
Sbjct: 662  LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM-DGFGFVPNVVIYNTVINGLC 720

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            +N  D ++  EVF  +    I               ++  Y TL+ G  N GR +D  R+
Sbjct: 721  KNR-DLNNALEVFYCMEKKGIRA-------------DAVTYNTLISGLSNSGRWTDAARL 766

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            L  M +++ +   P+ + +T ++   VK G++  AR +  EM R  V  N  TYN L+ G
Sbjct: 767  LRDMVKRKID---PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 823

Query: 296  YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            +C    +  AK +   M       PDVV+YN LI GF         +  F EM  +G+  
Sbjct: 824  FCIHGCLGDAKYMFDLMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVG 882

Query: 356  TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
               +Y TL+  +  + +  +A KVF+ M+ D  V  DIV +N+L++  C  G +E+A  +
Sbjct: 883  DAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIVTYNILLDCLCNNGKIEKALVM 941

Query: 416  IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            +E ++++    ++ TY  +  G+    K  EA  L++ +       ++GV          
Sbjct: 942  VEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSL------TRKGV---------- 985

Query: 476  KPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI----YVEMHSRMFT 530
            KPD    +  ++ +C R    R+A ++   M+E G  P++  Y +     Y  + + +  
Sbjct: 986  KPDAIAYITMISGLC-RKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIK 1044

Query: 531  SKH 533
            + H
Sbjct: 1045 AAH 1047



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 200/459 (43%), Gaps = 36/459 (7%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   P    +  +L A ANL + +  +    +M  +G   D+ ++ ++I    R SR   
Sbjct: 65  SQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSF 124

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + VL +++++G    + TF SL+  +     +  A ++V  M        K   E ++ 
Sbjct: 125 ALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM-------VKSGYEPNVV 177

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y++  +G   + +      L N +          K    +   Y TL+ G    GR SD
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEMEK--------KGLGADVVTYNTLLTGLCYSGRWSD 229

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             RML  M ++  N   PD VT+T ++   VK G++D A+++  EM +  V  N +TYN 
Sbjct: 230 AARMLRDMMKRSIN---PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++ G C   ++  AK+    MA      P+VV+YN LI GF         +  F  M   
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G      +Y TL+  +    + ++A  +F  M+   RV  DI+   +L+ G C  G +E 
Sbjct: 346 GFNADIFTYNTLIHGYCQVGKLRVALDIFCWMV-SRRVTPDIITHCILLHGLCVNGEIES 404

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A    + M+E+  Y  +  Y  + +G+  A K  +A  L+      C +  EGV      
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELF------CRLPVEGV------ 452

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
               KPD      +     +    R+A E++  M+E GI
Sbjct: 453 ----KPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 176/380 (46%), Gaps = 26/380 (6%)

Query: 55   KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL- 112
            +P      ++LN      + ++ + L D M  FG  P+V+ YN +I  LC      + L 
Sbjct: 671  RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 730

Query: 113  -VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              + +E+    GI     T+ +L++     G    A  +++ M + + D   I     ++
Sbjct: 731  VFYCMEK---KGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALID 787

Query: 172  DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             +  E  G+  +   ++++++  S+              PN   Y +L+ G+   G + D
Sbjct: 788  TFVKE--GNLLEARNLYKEMIRRSV-------------VPNVFTYNSLINGFCIHGCLGD 832

Query: 232  TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
               M   M  +      PD VTY T+++   K+  ++   ++  EMT  G+  +  TYN 
Sbjct: 833  AKYMFDLMVSK---GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 889

Query: 292  LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
            L+ GYCQ  +++ A+++   M  D  + PD+V+YNIL+D          AL    +++  
Sbjct: 890  LIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS 948

Query: 352  GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
             +    I+Y  +++    + + K A  +F  + R   VK D +A+  ++ G CR GL  E
Sbjct: 949  EMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKG-VKPDAIAYITMISGLCRKGLQRE 1007

Query: 412  AKRIIERMKENGFYPNVATY 431
            A ++  RMKE+GF P+   Y
Sbjct: 1008 ADKLCRRMKEDGFMPSERIY 1027



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/423 (21%), Positives = 182/423 (43%), Gaps = 68/423 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ GY P +  + +++         G       F +V+  V+   +P++V         
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDA-----FSLVILMVKSGYEPNVV--------V 178

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     G+    L+L ++M + G   DV+TYN ++     + R      +L  ++
Sbjct: 179 YNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM 238

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +  I   + TF +L+  +V                                      +G+
Sbjct: 239 KRSINPDVVTFTALIDVFV-------------------------------------KQGN 261

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D+  E++++++ +S++             PN+  Y +++ G    GR+ D  +    M 
Sbjct: 262 LDEAQELYKEMIQSSVD-------------PNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+ VTY T++S   K   +D   ++   M+  G  A+  TYN L+ GYCQ  
Sbjct: 309 SK---GCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVG 365

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++  A ++   M    ++ PD++++ IL+ G  +  +   AL  F++MR        ++Y
Sbjct: 366 KLRVALDIFCWMV-SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAY 424

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++     + + + A ++F  +  +  VK D   + +++ G C+ G   EA  +I RMK
Sbjct: 425 NIMIHGLCKADKVEKAWELFCRLPVEG-VKPDARTYTIMILGLCKNGPRREADELIRRMK 483

Query: 421 ENG 423
           E G
Sbjct: 484 EEG 486



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/517 (19%), Positives = 194/517 (37%), Gaps = 119/517 (23%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +  +L+     G+ +  L  FD M E      ++ YN+MI    +A +      +
Sbjct: 384 PDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWEL 443

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD-LEDYS 174
             R+   G+     T+  ++      G    A+ +++ M+E    +C++  E D LE++S
Sbjct: 444 FCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKE-EGIICQMNAEDDHLEEHS 502

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S N+       E++E+   +  NP     L+P  F+ + + +       +  G   +T  
Sbjct: 503 SSNKEISLSLREIWER---SKSNPFWMQRLIPIAFSSSVKGFVRRHYLLLERGNNPET-- 557

Query: 235 MLGAMRRQEDNASHPDH---------------------------------VTYTTVVSAL 261
              ++ R    ASH  H                                 V +T V++ +
Sbjct: 558 ---SLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVI 614

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNI------------------------------ 291
            K    D    +  +M  +G+  +  ++ I                              
Sbjct: 615 AKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSI 674

Query: 292 -----LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
                LL G+CQ  +  +A  L+  M D     P+VV YN +I+G     D   AL  F 
Sbjct: 675 VTLGSLLNGFCQGNRFQEAVSLVDSM-DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFY 733

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKV------------ 391
            M  +GI    ++Y TL+   + S +   A ++  +M++   DP V              
Sbjct: 734 CMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEG 793

Query: 392 -------------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
                              ++  +N L+ G+C  G + +AK + + M   G +P+V TY 
Sbjct: 794 NLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYN 853

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +L  G   +++  + + L+      CE+  +G+  D+
Sbjct: 854 TLITGFCKSKRVEDGMKLF------CEMTYQGLVGDA 884



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 19/217 (8%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I  D+ S+ ILI  F      + AL+   +M   G  P+ +++ +L+  F L ++   A 
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +   M++    + ++V +N L++G C+ G +  A  ++  M++ G   +V TY +L  G
Sbjct: 162 SLVILMVKSG-YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +  + +  +A  + +++ +R                 + PD     AL D+ V+     +
Sbjct: 221 LCYSGRWSDAARMLRDMMKR----------------SINPDVVTFTALIDVFVKQGNLDE 264

Query: 498 ALEIVACMEEHGIPPNKTKYKKIY--VEMHSRMFTSK 532
           A E+   M +  + PN   Y  I   + MH R++ +K
Sbjct: 265 AQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 58/295 (19%)

Query: 29  VESVKLFDVVVKR-----VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQ 83
           V    L DV VK+      ++     I S   P+   YN+++N     G+     + FD 
Sbjct: 247 VTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDL 306

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M   G  P+V+TYN +I    +       + + +R+   G    + T+ +L+  Y   G 
Sbjct: 307 MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203
           L +A  I   M                                                 
Sbjct: 367 LRVALDIFCWM------------------------------------------------- 377

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
            + +   P+   +  L+ G    G +   +     MR  E    +   V Y  ++  L K
Sbjct: 378 -VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESE---KYIGIVAYNIMIHGLCK 433

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           A  +++A ++   +   GV  +  TY I++ G C+     +A EL+R M ++  I
Sbjct: 434 ADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGII 488


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 233/496 (46%), Gaps = 60/496 (12%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L+ G+ P+   +ST+++     G     E+V L D +V+              +P+    
Sbjct: 131 LKFGFEPNTITFSTLINGFCLEGR--VSEAVALVDRMVEM-----------KYRPNVVTV 177

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N ++N     G+  + L L D+M ++G + + +TY  ++    ++    L + +  ++ E
Sbjct: 178 NTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEE 237

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----E 176
             I   +  +  ++ +    G+L+ A ++   M        K I+  D+  YSS      
Sbjct: 238 RSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEM------KGIKA-DVVAYSSIIGGLC 290

Query: 177 NEGDDDDDDEVFEKLLPNSINPS------------SEPPLL----------PKTFAPNSR 214
           N+G  DD  ++  +++  +I P+             E  LL           +  AP++ 
Sbjct: 291 NDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTI 350

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y++L+ G+  E R+ +  +ML  M  +      P+ VTY+ ++++  KA  +D   ++ 
Sbjct: 351 TYSSLIDGFCKENRLGEANQMLDLMVSK---GCEPNIVTYSILINSYCKAKRVDNGMRLF 407

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            E++  G+ A+ +TYN L++G+CQ  +++ AKEL +EM     + P VV+Y IL+DG   
Sbjct: 408 CEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRG-VPPSVVTYGILLDGLCD 466

Query: 335 IDDSAGALTFFNEM-RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
             +   AL  F +M ++R I    I Y  ++     +S+   A  +F   L    VK D+
Sbjct: 467 NGELQKALEIFEKMQKSRMILGIGI-YNIIIHGMCNASKVDDAWSLFCS-LSVKGVKPDV 524

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           + +N+++ G C+ G + EA  +  +MKE+G  P+  TY  L      A   G  ++   E
Sbjct: 525 LTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIR----AHLGGSGVISSVE 580

Query: 454 IKERCEVKKEGVNADS 469
           + E  E+K  G  AD+
Sbjct: 581 LIE--EMKMRGFAADA 594



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 123/286 (43%), Gaps = 18/286 (6%)

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +LG  +  + N    +  T   +++   +   +  A  V+    + G   N IT++ L+ 
Sbjct: 88  VLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLIN 147

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C + ++ +A  L+  M  + K  P+VV+ N LI+G  L      AL   + M   G  
Sbjct: 148 GFCLEGRVSEAVALVDRMV-EMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCE 206

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
             +I+Y  ++     S    LA  +F +M  +  +K  +V ++++++  C+ G +++A  
Sbjct: 207 ANEITYGPVLNRMCKSGNTALALDLFRKM-EERSIKASVVQYSIVIDSLCKDGNLDDALS 265

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +   M+  G   +V  Y S+  G+    +  +   + +E+  R                 
Sbjct: 266 LFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGR----------------N 309

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + P+     AL D+ V+     +A E+   M   GI P+   Y  +
Sbjct: 310 IIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSL 355



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 23/212 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A+  F  M      P+ I ++ L  A A   +  L      EM  +  ++ ++   N+++
Sbjct: 53  AIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNG-IEHNMYTMNIMI 111

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             +CR   +  A  ++ R  + GF PN  T+ +L NG  L  +  EA+ L          
Sbjct: 112 NCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVAL---------- 161

Query: 461 KKEGVNADSDLPPPLKPDEELLDALAD-ICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                  D  +    +P+   ++ L + +C++     +AL ++  M ++G   N+  Y  
Sbjct: 162 ------VDRMVEMKYRPNVVTVNTLINGLCLKGR-VTEALVLIDRMVKYGCEANEITYGP 214

Query: 520 IYVEMHSRMFTSKHASQARQDRRRERKRAAEA 551
           +     +RM  S + + A    R+  +R+ +A
Sbjct: 215 VL----NRMCKSGNTALALDLFRKMEERSIKA 242


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 146/314 (46%), Gaps = 24/314 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            AP   +Y   +      G+V + + ++  M+   D A  PD VT+ T+++ L KAG +D
Sbjct: 50  MAPTPSMYNFFVHALCKSGKVPEAMEVVKNMK---DGACKPDVVTFNTLIAGLCKAGRLD 106

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+QVL EM R G  AN +TYN L+ G     +  +A  +++ M       PD  +YN +
Sbjct: 107 EAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT----TTPDTQTYNAI 162

Query: 329 IDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           I GF    +   A  F  EM+ R G +P   +Y+ L+     SS  + A+++  EM+   
Sbjct: 163 IHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRK 222

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
                +VA+N LV+GYC+   ++ A+ ++  M E+G  P+V TY ++ +G+       + 
Sbjct: 223 DCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKG 282

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             L +++  R                  KPD      L     +A    +A  +V  M E
Sbjct: 283 FALLEKMVSR----------------GCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326

Query: 508 HGIPPNKTKYKKIY 521
            G  PN   Y  ++
Sbjct: 327 DGCTPNAVTYSLVF 340



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 8/250 (3%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           FA N   Y TL+ G  + GR  + V ++  M       + PD  TY  ++    K+G +D
Sbjct: 120 FAANLVTYNTLINGLSSAGRSGEAVLVMQGM------TTTPDTQTYNAIIHGFCKSGEID 173

Query: 269 RARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           RA   L EM  R G   +  TY+IL+ G C+   + KA ELL+EM         VV++N 
Sbjct: 174 RAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNT 233

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+DG+    D   A    + M   G AP  ++Y+T++              + ++M+   
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
             K D+V + +LV G C+ G + EA R+++RM E+G  PN  TY  + +G+    K   A
Sbjct: 294 -CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMA 352

Query: 448 LLLWKEIKER 457
             L   I+++
Sbjct: 353 NDLLTSIRDK 362



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 150/365 (41%), Gaps = 33/365 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  + YN  ++A    GK  + +++   M +   KPDV+T+N +I    +A R      V
Sbjct: 52  PTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQV 111

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G    + T+ +L+      G    A  ++Q M              D + Y++
Sbjct: 112 LDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTP----------DTQTYNA 161

Query: 176 ENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              G     + D  +  L         E        +P++  Y+ L+ G      +    
Sbjct: 162 IIHGFCKSGEIDRAYGFL---------EEMKQRAGCSPDTFTYSILINGLCKSSNLRKAD 212

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M  ++D  +    V + T+V    KA  +DRAR++L+ M   G   + +TY+ ++
Sbjct: 213 ELLQEMIGRKDCCASV--VAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTII 270

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+   +DK   LL +M      +PDVV+Y +L+ G         A      M   G 
Sbjct: 271 DGLCRCGDVDKGFALLEKMVSRG-CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++Y+ +        +  +AN +    +RD     D+VA+  L        L+   K
Sbjct: 330 TPNAVTYSLVFDGLCKIDKLDMANDLLTS-IRDKGRITDVVAFEAL--------LLSVKK 380

Query: 414 RIIER 418
           R+++R
Sbjct: 381 RLLDR 385



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 72/331 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG+  ++  ++T+++ L+++G  G  E+V +   +               + PDT  
Sbjct: 115 MERSGFAANLVTYNTLINGLSSAGRSG--EAVLVMQGMT--------------TTPDTQT 158

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHE-FGAKPDVLTYNVMIK-LCARASRKHLLVFVLER 118
           YNA+++     G+  +     ++M +  G  PD  TY+++I  LC  ++ +     + E 
Sbjct: 159 YNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEM 218

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           I        +  F +LV  Y    DL+ A  ++ +M                        
Sbjct: 219 IGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSM------------------------ 254

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                                     L    AP+   Y+T++ G     R  D  +    
Sbjct: 255 --------------------------LEHGCAPDVVTYSTIIDGLC---RCGDVDKGFAL 285

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           + +       PD VTYT +V+ L KAG M  A +++  M   G   N +TY+++  G C+
Sbjct: 286 LEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             ++D A +LL  + D  +I  DVV++  L+
Sbjct: 346 IDKLDMANDLLTSIRDKGRI-TDVVAFEALL 375



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 2/133 (1%)

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLANKV 379
           D  +Y +L+    L  +   A+    EM  + G+APT   Y   + A   S +   A +V
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
              M +D   K D+V +N L+ G C+ G ++EA+++++ M+ +GF  N+ TY +L NG+S
Sbjct: 77  VKNM-KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135

Query: 440 LARKPGEALLLWK 452
            A + GEA+L+ +
Sbjct: 136 SAGRSGEAVLVMQ 148



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 55/269 (20%)

Query: 288 TYNILLKGYCQQLQIDKAKELLREMAD--------------------------------- 314
           TY +L++ +C   ++  A +LLREM                                   
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 315 --DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
             D   +PDVV++N LI G         A    +EM   G A   ++Y TL+   + + +
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYPNVATY 431
              A  V   M   P    D   +N ++ G+C+ G ++ A   +E MK+  G  P+  TY
Sbjct: 140 SGEAVLVMQGMTTTP----DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTY 195

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
             L NG+  +    +A  L +E+  R            D    +     L+D       +
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGR-----------KDCCASVVAFNTLVDGYC----K 240

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           A    +A E+++ M EHG  P+   Y  I
Sbjct: 241 AQDLDRARELLSSMLEHGCAPDVVTYSTI 269


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 146/314 (46%), Gaps = 24/314 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            AP   +Y   +      G+V + + ++  M+   D A  PD VT+ T+++ L KAG +D
Sbjct: 50  MAPTPSMYNFFVHALCKSGKVPEAMEVVKNMK---DGACKPDVVTFNTLIAGLCKAGRLD 106

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+QVL EM R G  AN +TYN L+ G     +  +A  +++ M       PD  +YN +
Sbjct: 107 EAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT----TTPDTQTYNAI 162

Query: 329 IDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           I GF    +   A  F  EM+ R G +P   +Y+ L+     SS  + A+++  EM+   
Sbjct: 163 IHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRK 222

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
                +VA+N LV+GYC+   ++ A+ ++  M E+G  P+V TY ++ +G+       + 
Sbjct: 223 DCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKG 282

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             L +++  R                  KPD      L     +A    +A  +V  M E
Sbjct: 283 FALLEKMVSR----------------GCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326

Query: 508 HGIPPNKTKYKKIY 521
            G  PN   Y  ++
Sbjct: 327 DGCTPNAVTYSLVF 340



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 8/250 (3%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           FA N   Y TL+ G  + GR  + V ++  M       + PD  TY  ++    K+G +D
Sbjct: 120 FAANLVTYNTLINGLSSAGRSGEAVLVMQGM------TTTPDTQTYNAIIHGFCKSGEID 173

Query: 269 RARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           RA   L EM  R G   +  TY+IL+ G C+   + KA ELL+EM         VV++N 
Sbjct: 174 RAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNT 233

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+DG+    D   A    + M   G AP  ++Y+T++              + ++M+   
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
             K D+V + +LV G C+ G + EA R+++RM E+G  PN  TY  + +G+    K   A
Sbjct: 294 -CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMA 352

Query: 448 LLLWKEIKER 457
             L   I+++
Sbjct: 353 NDLLTSIRDK 362



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 138/316 (43%), Gaps = 30/316 (9%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            KPD   +N ++      G+  +  Q+ D+M   G   +++TYN +I   + A R    V
Sbjct: 85  CKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAV 144

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V++    M  T    T+ +++  +   G+++ A   ++ M++  R  C      D   Y
Sbjct: 145 LVMQ---GMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQ--RAGCSP----DTFTY 195

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP-----KTFAPNSRIYTTLMKGYMNEGR 228
           S    G            L  S N      LL      K    +   + TL+ GY     
Sbjct: 196 SILING------------LCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQD 243

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +     +L +M    ++   PD VTY+T++  L + G +D+   +L +M   G   + +T
Sbjct: 244 LDRARELLSSML---EHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVT 300

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y +L+ G C+  ++ +A  L++ M +D    P+ V+Y+++ DG   ID    A      +
Sbjct: 301 YTVLVTGLCKAGKMVEACRLVKRMLEDG-CTPNAVTYSLVFDGLCKIDKLDMANDLLTSI 359

Query: 349 RARGIAPTKISYTTLM 364
           R +G     +++ TL+
Sbjct: 360 RDKGRVTDVVAFETLL 375



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 135/331 (40%), Gaps = 72/331 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG+  ++  ++T+++ L+++G  G  E+V +   +               + PDT  
Sbjct: 115 MERSGFAANLVTYNTLINGLSSAGRSG--EAVLVMQGMT--------------TTPDTQT 158

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHE-FGAKPDVLTYNVMIK-LCARASRKHLLVFVLER 118
           YNA+++     G+  +     ++M +  G  PD  TY+++I  LC  ++ +     + E 
Sbjct: 159 YNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEM 218

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           I        +  F +LV  Y    DL+ A  ++ +M                        
Sbjct: 219 IGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSM------------------------ 254

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                                     L    AP+   Y+T++ G     R  D  +    
Sbjct: 255 --------------------------LEHGCAPDVVTYSTIIDGLC---RCGDVDKGFAL 285

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           + +       PD VTYT +V+ L KAG M  A +++  M   G   N +TY+++  G C+
Sbjct: 286 LEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             ++D A +LL  + D  ++  DVV++  L+
Sbjct: 346 IDKLDMANDLLTSIRDKGRV-TDVVAFETLL 375



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 2/133 (1%)

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLANKV 379
           D  +Y +L+    L  +   A+    EM  + G+APT   Y   + A   S +   A +V
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
              M +D   K D+V +N L+ G C+ G ++EA+++++ M+ +GF  N+ TY +L NG+S
Sbjct: 77  VKNM-KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135

Query: 440 LARKPGEALLLWK 452
            A + GEA+L+ +
Sbjct: 136 SAGRSGEAVLVMQ 148



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 55/269 (20%)

Query: 288 TYNILLKGYCQQLQIDKAKELLREMAD--------------------------------- 314
           TY +L++ +C   ++  A +LLREM                                   
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 315 --DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
             D   +PDVV++N LI G         A    +EM   G A   ++Y TL+   + + +
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYPNVATY 431
              A  V   M   P    D   +N ++ G+C+ G ++ A   +E MK+  G  P+  TY
Sbjct: 140 SGEAVLVMQGMTTTP----DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTY 195

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
             L NG+  +    +A  L +E+  R            D    +     L+D       +
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGR-----------KDCCASVVAFNTLVDGYC----K 240

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           A    +A E+++ M EHG  P+   Y  I
Sbjct: 241 AQDLDRARELLSSMLEHGCAPDVVTYSTI 269


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 132/533 (24%), Positives = 220/533 (41%), Gaps = 102/533 (19%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   + NA+L+  + +G+     + F  M   G K  V TYN+MI    +     +   +
Sbjct: 218 PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL 277

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             ++ E G T  + T+ SL+  +   G L+    I + M++                   
Sbjct: 278 FTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA------------------ 319

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF-----------APNSRIYTTLMKGYM 224
               D D D   +  L    IN   +   +PK F            PN   Y+T +  + 
Sbjct: 320 ----DCDPDVITYNAL----INCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFC 371

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
            EG + + ++    MRR    A  P+  TYT+++ A  KAG++  A +++ E+ + G+  
Sbjct: 372 KEGMLQEAIKFFVDMRRV---ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKL 428

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N +TY  LL G C++ ++ +A+E+ R M  +A + P+  +Y  L+ GFI   +   A   
Sbjct: 429 NVVTYTALLDGLCEEGRMKEAEEVFRAML-NAGVAPNQETYTALVHGFIKAKEMEYAKDI 487

Query: 345 FNEMRARGIAP-----------------------------------TKISYTTLMKAFAL 369
             EM+ + I P                                     + YTTLM A+  
Sbjct: 488 LKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFK 547

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           S Q   A  + +EML D  +    V +  L++G C+ GLV+EA     RM E G  PNVA
Sbjct: 548 SGQATEALTLLEEML-DLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVA 606

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERC-EVKKEGVNADSDLPPPLKPDEELLDALADI 488
            Y +L +G+                K  C EV K+    D  L   + PD+    AL D 
Sbjct: 607 VYTALVDGLC---------------KNNCFEVAKKLF--DEMLDKGMMPDKIAYTALIDG 649

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDR 541
            ++    ++AL +   M E G+  +   Y  +       ++   H+ Q ++ R
Sbjct: 650 NMKHGNLQEALNLRDRMIEIGMELDLHAYTAL-------IWGLSHSGQVQKAR 695



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 209/480 (43%), Gaps = 44/480 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G+ P +  +++++      G         L D  +    +  D    +D  PD   
Sbjct: 281 MKEAGFTPDIVTYNSLIDGHGKLG---------LLDECICIFEQMKD----ADCDPDVIT 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YNA++N      +  K  +   +M   G KP+V+TY+  I   C     +  + F ++ +
Sbjct: 328 YNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVD-M 386

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
             + +T    T+ SL+ A    G+L  A  +V+ + +    +  ++    L D   E EG
Sbjct: 387 RRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKL-NVVTYTALLDGLCE-EG 444

Query: 180 DDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYT 217
              + +EVF  +L   + P+ E                        +  K   P+  +Y 
Sbjct: 445 RMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYG 504

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           T++ G  NE R+ +   ++G ++    N    + V YTT++ A  K+G    A  +L EM
Sbjct: 505 TILWGLCNESRLEEAKLLIGEIKESGINT---NAVIYTTLMDAYFKSGQATEALTLLEEM 561

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
             +G+ A  +TY  L+ G C+   + +A      M+ +  ++P+V  Y  L+DG    + 
Sbjct: 562 LDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMS-EIGLQPNVAVYTALVDGLCKNNC 620

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   F+EM  +G+ P KI+YT L+         + A  + D M+ +  +++D+ A+ 
Sbjct: 621 FEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMI-EIGMELDLHAYT 679

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            L+ G    G V++A+ +++ M   G  P+   Y  L        K  EAL L  E+ +R
Sbjct: 680 ALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKR 739



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 116/298 (38%), Gaps = 19/298 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y A+++      + +    +  +M E   KPD+L Y  ++      SR      +
Sbjct: 463 PNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLL 522

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  I E GI      + +L+ AY   G    A T+++ M             LDL   ++
Sbjct: 523 IGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM-------------LDLGLIAT 569

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E       D      L+  +++       +     PN  +YT L+ G           ++
Sbjct: 570 EVTYCALIDGLCKSGLVQEAMHHFGRMSEIG--LQPNVAVYTALVDGLCKNNCFEVAKKL 627

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M    D    PD + YT ++   +K G++  A  +   M  IG+  +   Y  L+ G
Sbjct: 628 FDEML---DKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWG 684

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
                Q+ KA+ LL EM     + PD V Y  LI  +  +     AL   NEM  RG+
Sbjct: 685 LSHSGQVQKARNLLDEMIGKG-VLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 191/431 (44%), Gaps = 33/431 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P +  +N +L          ++   F++  +     DV ++ ++IK C  A        +
Sbjct: 127 PGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDL 185

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G +  +  + +L+      G++E A+ +   M  G+  +        +  +  
Sbjct: 186 LVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM--GKFGLVANEWTYTVLIHGL 243

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G      E++EK+  + +              PN   Y  +M     +GR  D  ++
Sbjct: 244 FKNGIKKQGFEMYEKMQEHGV-------------FPNLHTYNCVMNQLCKDGRTKDAFKV 290

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              MR +       + VTY T++  L +    + A +V+ +M   G+  N ITYN L+ G
Sbjct: 291 FDEMRER---GVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDG 347

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   ++ KA  L R++     + P +V+YNIL+ GF    D++GA     EM  RGI P
Sbjct: 348 FCGVRKLGKALSLCRDLKSRG-LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKP 406

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           +K++YT L+  FA S   + A ++   M  +  +  D+  +++L+ G+C  G + EA R+
Sbjct: 407 SKVTYTILIDTFARSDNMEKAIQLRSSM-EELGLTPDVHTYSVLIHGFCIKGRMNEASRL 465

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            + M E  F PN   Y ++  G         AL L++E++E+            +LPP +
Sbjct: 466 FKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEK------------ELPPNV 513

Query: 476 KPDEELLDALA 486
                +++ L 
Sbjct: 514 ASYRYMIEVLC 524



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 162/343 (47%), Gaps = 52/343 (15%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSD--------------------TVRMLGAMR-------- 240
           F+PN  IYTTL+ G   +G +                      TV + G  +        
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGF 253

Query: 241 ----RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
               + +++   P+  TY  V++ L K G    A +V  EM   GV  N +TYN L+ G 
Sbjct: 254 EMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGL 313

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++++ ++A E++ +M  D  I P++++YN LIDGF  +     AL+   ++++RG++P+
Sbjct: 314 CREMKANEANEVMDQMKSDG-INPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPS 372

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y  L+  F        A KV  EM  +  +K   V + +L++ + R   +E+A ++ 
Sbjct: 373 LVTYNILVSGFCKKGDTSGAGKVVKEM-EERGIKPSKVTYTILIDTFARSDNMEKAIQLR 431

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
             M+E G  P+V TY  L +G  +  +  EA  L+K + E+                  +
Sbjct: 432 SSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEK----------------KFE 475

Query: 477 PDEELLDALA-DICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           P+E + + +    C   + +R AL +   MEE  +PPN   Y+
Sbjct: 476 PNEVIYNTMVLGYCKEGSSYR-ALRLFREMEEKELPPNVASYR 517



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 136/289 (47%), Gaps = 19/289 (6%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  ++  V+    +AG ++++  +L E+   G   N + Y  L+ G C++ +I+KAK+L 
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            EM     +  +  +Y +LI G             + +M+  G+ P   +Y  +M     
Sbjct: 222 FEMGKFGLVANEW-TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCK 280

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             + K A KVFDEM R+  V  +IV +N L+ G CR     EA  ++++MK +G  PN+ 
Sbjct: 281 DGRTKDAFKVFDEM-RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLI 339

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY +L +G    RK G+AL L +++K R             L P L     L+       
Sbjct: 340 TYNTLIDGFCGVRKLGKALSLCRDLKSR------------GLSPSLVTYNILVSGFC--- 384

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
            +      A ++V  MEE GI P+K  Y  I ++  +R    + A Q R
Sbjct: 385 -KKGDTSGAGKVVKEMEERGIKPSKVTY-TILIDTFARSDNMEKAIQLR 431



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 188/416 (45%), Gaps = 34/416 (8%)

Query: 27  GPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
           G +E  K FD++V+ +R+F          P+   Y  +++ C   G+ +K   LF +M +
Sbjct: 177 GEIE--KSFDLLVE-LREFG-------FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK 226

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           FG   +  TY V+I    +   K     + E++ E G+   + T+  ++      G  + 
Sbjct: 227 FGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKD 286

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
           A  +   MRE R   C I+    L       E   ++ +EV +++  + IN         
Sbjct: 287 AFKVFDEMRE-RGVSCNIVTYNTLIGGLCR-EMKANEANEVMDQMKSDGIN--------- 335

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
               PN   Y TL+ G+     V    + L   R  +     P  VTY  +VS   K G 
Sbjct: 336 ----PNLITYNTLIDGFCG---VRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
              A +V+ EM   G+  +++TY IL+  + +   ++KA + LR   ++  + PDV +Y+
Sbjct: 389 TSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQ-LRSSMEELGLTPDVHTYS 447

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +LI GF +      A   F  M  +   P ++ Y T++  +        A ++F EM  +
Sbjct: 448 VLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREM-EE 506

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
             +  ++ ++  ++E  C+    +EA+ ++E+M ++G  P+     S+ N IS A+
Sbjct: 507 KELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS----DSILNLISRAK 558



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 18/222 (8%)

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           Q Q   +  LL  + +    +     Y ++I+ ++       ++ +FNEM  +G  P   
Sbjct: 71  QSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSN 130

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            +  L+     SS        F+E     +V +D+ ++ ++++G C  G +E++  ++  
Sbjct: 131 CFNNLLTFVVGSSSFNQWWCFFNE--SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVE 188

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           ++E GF PNV  Y +L +G     K GE   + K      E+ K G+ A          +
Sbjct: 189 LREFGFSPNVVIYTTLIDGCC---KKGE---IEKAKDLFFEMGKFGLVA----------N 232

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           E     L     +    ++  E+   M+EHG+ PN   Y  +
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCV 274


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 207/444 (46%), Gaps = 39/444 (8%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           GKP + + +F+ + E G KP ++TY  ++    R  R + +  +L ++ E G+      F
Sbjct: 57  GKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILF 116

Query: 132 QSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
            +++ A+   G +  A  I + M+E G +        L ++ +     G   +  ++ E 
Sbjct: 117 NAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTL-IKGFGI--VGRPHEAMKLLEM 173

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           ++ +                PN R Y  L++ +  +  + +       M +  ++   PD
Sbjct: 174 MIQDG------------NVKPNERTYNILIQAWCTKNELEEA---WNVMHKMVNSGMQPD 218

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIG--VPANRITYNILLKGYCQQLQIDKAKEL 308
            VTY T+  A  + G  D A +++ +M +    V  N  T  I+++GYC++  + +A   
Sbjct: 219 IVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRF 278

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L +M  +  + P+ V +N LI G++ I D+ G       M   GI P  ++Y+T+M A++
Sbjct: 279 LYKM-KELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWS 337

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            S       ++FD+M++   ++ DI A+++L +GY R G  ++A+ ++  M + G   NV
Sbjct: 338 SSGLMDNCEEIFDDMVK-AEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANV 396

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
             + ++ +G   A K   AL L++++ E               P  LK  E L+    + 
Sbjct: 397 VIFTTIISGWCAAGKMDCALRLYEKMNEM------------GTPLNLKTYETLIWGYGE- 443

Query: 489 CVRAAFFRKALEIVACMEEHGIPP 512
              A    KA E++  MEE G+ P
Sbjct: 444 ---AKQPWKAEELLVTMEESGVAP 464



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 206/458 (44%), Gaps = 71/458 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKF-SDPDIVSDS----- 54
           ++R G  PH     T+ + L   G    + +       + R+++F S P ++S       
Sbjct: 53  LIRKGK-PHEAV--TIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGV 109

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD+  +NA++NA ++ GK  + +++F +M E G KP   T+N +IK      R H  + 
Sbjct: 110 KPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMK 169

Query: 115 VLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           +LE +++ G +     T+  L+ A+    +LE A  ++  M                   
Sbjct: 170 LLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKM------------------- 210

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                 +N   +P ++          Y TL + +   G   +  
Sbjct: 211 ----------------------VNSGMQPDIV---------TYNTLARAFAQNGETDNAE 239

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R++  M +Q +N   P+  T   ++    K G+M  A + L +M  +GV  N + +N L+
Sbjct: 240 RLILKM-QQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLI 298

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL----TFFNEMR 349
           KGY      D  +E L  M ++  I+PDVV+Y+ +++ +     S+G +      F++M 
Sbjct: 299 KGYLDITDTDGVEEALTLM-EEFGIKPDVVTYSTIMNAW----SSSGLMDNCEEIFDDMV 353

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              I P   +Y+ L K +  + QP  A  + + M +   ++ ++V +  ++ G+C  G +
Sbjct: 354 KAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYG-LQANVVIFTTIISGWCAAGKM 412

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           + A R+ E+M E G   N+ TY +L  G   A++P +A
Sbjct: 413 DCALRLYEKMNEMGTPLNLKTYETLIWGYGEAKQPWKA 450



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 152/330 (46%), Gaps = 23/330 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    YTTL+       R +    +L    + E+N   PD + +  +++A   +G +  A
Sbjct: 76  PTIITYTTLVAALTRLKRFNSIPSLLS---KVEENGVKPDSILFNAMINAFSDSGKVHEA 132

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M   G      T+N L+KG+    +  +A +LL  M  D  ++P+  +YNILI 
Sbjct: 133 MKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQ 192

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR-DPRV 389
            +   ++   A    ++M   G+ P  ++Y TL +AFA + +   A ++  +M + + +V
Sbjct: 193 AWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKV 252

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPG--E 446
           K +     +++ GYC+ G + EA R + +MKE G +PN   + SL  G + +    G  E
Sbjct: 253 KPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEE 312

Query: 447 ALLLWKE--IKERCEVKKEGVNA--------------DSDLPPPLKPDEELLDALADICV 490
           AL L +E  IK         +NA              D  +   ++PD +    LA   V
Sbjct: 313 ALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYV 372

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           RA    KA  ++  M ++G+  N   +  I
Sbjct: 373 RAGQPDKAEALLNSMTKYGLQANVVIFTTI 402



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 24/203 (11%)

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA----LSSQPKLAN 377
           V+S   L+   I       A+T FN +   G  PT I+YTTL+ A       +S P L +
Sbjct: 43  VISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLS 102

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           KV      +  VK D + +N ++  +   G V EA +I  +MKE G  P  +T+ +L  G
Sbjct: 103 KV-----EENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKG 157

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
             +  +P EA+ L + + +   V               KP+E   + L           +
Sbjct: 158 FGIVGRPHEAMKLLEMMIQDGNV---------------KPNERTYNILIQAWCTKNELEE 202

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           A  ++  M   G+ P+   Y  +
Sbjct: 203 AWNVMHKMVNSGMQPDIVTYNTL 225



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T IS T LM       +P  A  +F+ +  +   K  I+ +  LV    R+        +
Sbjct: 42  TVISRTKLMSTLIRKGKPHEAVTIFNSLTEEGH-KPTIITYTTLVAALTRLKRFNSIPSL 100

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           + +++ENG  P+   + ++ N  S + K  EA+ +++++KE C  K
Sbjct: 101 LSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKE-CGCK 145


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 190/430 (44%), Gaps = 52/430 (12%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERIL 120
           N++LN  A  G     + +F+QM   GA PD  T  +M K  C      H L FV E + 
Sbjct: 212 NSILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFV-EEMT 270

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR-ELDLEDYSSENEG 179
           +MG+ + +  + +++  Y   G    A  ++ ++  GR     I+   L ++ Y   NE 
Sbjct: 271 KMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSL-PGRGFSPNIVTYTLLVKGYC--NEK 327

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           + ++ + V +++  N            K    +  ++  ++ GY   GR+ D  R+L  M
Sbjct: 328 NMEEAEGVVQEIRKN------------KQLVVDEAVFGAVINGYCQMGRMEDAARLLNEM 375

Query: 240 ---RRQED---------------------NASH--------PDHVTYTTVVSALVKAGSM 267
              R Q +                     N  H        PD  +Y ++V    K G M
Sbjct: 376 VDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLM 435

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           ++A +    M R G  A  +TYN LLKG+C    ID A  L   M     I P+ +S + 
Sbjct: 436 NKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKG-IAPNEISCST 494

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+DGF     +  AL  + E  ARG+A    ++ T++       +   A ++ D+M +  
Sbjct: 495 LLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKM-KQW 553

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           R   DI+ +  L  GYC++G ++ A RI+  ++  GF P +  + SL  G  +A++ G+ 
Sbjct: 554 RCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKV 613

Query: 448 LLLWKEIKER 457
             +  E+  R
Sbjct: 614 NDILFEMSNR 623



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 125/538 (23%), Positives = 226/538 (42%), Gaps = 78/538 (14%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           VV+ +RK  +  +V D     A + AV+N    +G+ +   +L ++M +   + ++  YN
Sbjct: 335 VVQEIRK--NKQLVVDE----AVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYN 388

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMRE 156
           +MI    +  R      +L  +  +G+     ++ SLV  Y   G +  A ET    +R 
Sbjct: 389 IMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRN 448

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL-----PNSINPSS----------- 200
           G          L L+ + S   G  DD   ++  +L     PN I+ S+           
Sbjct: 449 GFAATTLTYNAL-LKGFCSL--GSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKT 505

Query: 201 EPPL------LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
           E  L      L +  A N+  + T++ G     R+ +   ++  M++       PD +TY
Sbjct: 506 EKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWR---CPPDIITY 562

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
            T+ S   K G MDRA ++L E+  +G       +N L+ G+    Q  K  ++L EM++
Sbjct: 563 RTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSN 622

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
              + P+ V+Y  LI G+    D   A   + EM  +G+ P     ++L+  F    +  
Sbjct: 623 RG-LSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFD 681

Query: 375 LANKVFDEM--------LRDPRVKVDIVA-----------------WNMLVEGYCRMGLV 409
            AN V   +        +  PR+++  VA                 WN+++ G C++G +
Sbjct: 682 EANLVLQNLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRI 741

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           E+AK ++  +K+ GF  +  TY SL +G S +     A  L                 D+
Sbjct: 742 EDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDL----------------RDT 785

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
            L   L P+    ++L     ++    +A+ +   +   GI PN   Y  + ++ H +
Sbjct: 786 MLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTL-IDKHCK 842



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 193/460 (41%), Gaps = 53/460 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVVK---RVRK 44
           ML+ G  P+  + ST++     SG               G  ++   F+ V+    ++ +
Sbjct: 480 MLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIER 539

Query: 45  FSDPDIVSD------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             + + + D        PD   Y  + +    +G   +  ++ +++   G  P +  +N 
Sbjct: 540 MPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNS 599

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-G 157
           +I     A +   +  +L  +   G++     + +L+A +   GDL  A  +   M E G
Sbjct: 600 LITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKG 659

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                 I   L    Y    +G  D+ + V + L+           ++P   AP   I  
Sbjct: 660 LVPNLFICSSLVSCFY---RKGKFDEANLVLQNLVGTD--------MIPDISAPRLEI-- 706

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
                    G+V++ +  +           H   + +  V+  L K G ++ A+ +LA++
Sbjct: 707 ---------GKVANFIDTVAG------GNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADL 751

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              G  A+  TY+ L+ G      +D A +L R+      + P++V+YN LI G     +
Sbjct: 752 KDKGFVADNFTYSSLIHGCSASGFVDVAFDL-RDTMLSVGLTPNIVTYNSLIYGLCKSGE 810

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
            + A++ F ++  +GI+P  I+Y TL+           A K+   M+ +  +   +  ++
Sbjct: 811 LSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEG-IHPTVFTYS 869

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +L+ G C  G +EEA +++++M EN   PN  TY +L  G
Sbjct: 870 ILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQG 909



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 143/325 (44%), Gaps = 26/325 (8%)

Query: 202 PPLLP------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
           PPL P      K F+ ++  +  L++   N G++   +++   MR      S     +  
Sbjct: 156 PPLFPHLVEVYKEFSFSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMR---SCN 212

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           ++++ L + G +     V  +M R G   ++ T  I+ K YC+   +  A E + EM   
Sbjct: 213 SILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTK- 271

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             +E ++V+Y+ +++G+  +  +  A    + +  RG +P  ++YT L+K +      + 
Sbjct: 272 MGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEE 331

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A  V  E+ ++ ++ VD   +  ++ GYC+MG +E+A R++  M ++    N+  Y  + 
Sbjct: 332 AEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMI 391

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           NG     +  EA  +  E+         GV         ++PD    ++L D   +    
Sbjct: 392 NGYCKLGRMVEAHNILHEMT--------GVG--------VRPDTYSYNSLVDGYCKKGLM 435

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            KA E    M  +G       Y  +
Sbjct: 436 NKAFETYNTMLRNGFAATTLTYNAL 460



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 101/485 (20%), Positives = 203/485 (41%), Gaps = 65/485 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           MLR+G+      ++ ++    + G  DD    +++L+ +++K+              P+ 
Sbjct: 445 MLRNGFAATTLTYNALLKGFCSLGSIDD----ALRLWFLMLKK-----------GIAPNE 489

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
            + + +L+     GK +K L L+ +    G   +  T+N +I    +  R      ++++
Sbjct: 490 ISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDK 549

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSEN 177
           + +      + T+++L + Y   GD++ A  I+  +   G     +    L    + ++ 
Sbjct: 550 MKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQ 609

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G  +D   +FE              +  +  +PN+  Y  L+ G+  EG +     +  
Sbjct: 610 HGKVNDI--LFE--------------MSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYL 653

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT-------------RIGVPA 284
            M    +    P+    +++VS   + G  D A  VL  +               IG  A
Sbjct: 654 EMI---EKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIGKVA 710

Query: 285 N-------------RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           N             +I +NI++ G C+  +I+ AK LL ++ D   +  D  +Y+ LI G
Sbjct: 711 NFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVA-DNFTYSSLIHG 769

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                    A    + M + G+ P  ++Y +L+     S +   A  +F + L    +  
Sbjct: 770 CSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKK-LWTKGISP 828

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           + + +N L++ +C+ G + EA ++ +RM E G +P V TY  L NG+       EA+ L 
Sbjct: 829 NAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLL 888

Query: 452 KEIKE 456
            ++ E
Sbjct: 889 DQMIE 893



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 103/265 (38%), Gaps = 53/265 (20%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           + +V  F D     +       +N V+     LG+ +    L   + + G   D  TY+ 
Sbjct: 706 IGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSS 765

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I  C+ +    +   + + +L +G+T  + T+ SL+      G+L  A ++        
Sbjct: 766 LIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSL-------- 817

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                                        F+KL    I             +PN+  Y T
Sbjct: 818 -----------------------------FKKLWTKGI-------------SPNAITYNT 835

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+  +  +G +++  ++    +R  +   HP   TY+ +++ L   G M+ A ++L +M 
Sbjct: 836 LIDKHCKDGYITEAFKL---KQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMI 892

Query: 279 RIGVPANRITYNILLKGYCQQLQID 303
              V  N +TY  L++GY +   +D
Sbjct: 893 ENNVDPNYVTYWTLIQGYVRCESVD 917


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 187/401 (46%), Gaps = 20/401 (4%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   YN ++NA    G  ++  QL +     G +P +LTYN ++    +  +      VL
Sbjct: 291 DIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVL 350

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +L++G+T    T+ +L+       ++  A+ I   M   RR V       DL  +SS 
Sbjct: 351 IEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEM--SRRGVLP-----DLVSFSSL 403

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G    +  +++ L+       S          P++ IYT L+ G+   G +SD ++M 
Sbjct: 404 -IGVLARNGHLYQALMHFREMERS-------GIVPDNVIYTILIDGFCRNGALSDALKMR 455

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M  +       D VTY T ++ L K      A  +  EM   G+  +  T+  L++GY
Sbjct: 456 DEMLAR---GCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   +DKA  L   M     ++PD V+YN LIDGF    +   A   +++M  + I P 
Sbjct: 513 CKDGNMDKALNLFEAMV-RTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPD 571

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ISY T++  F  S     A  + D+ML +  ++ ++V  N L++GYCR G + +A   +
Sbjct: 572 HISYGTVLNGFCSSGLLPEALNLCDQML-EKGIRPNLVTCNTLIKGYCRSGDMPKAYEYL 630

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +M  NG  P+  +Y +L +G        +A +L  E+++R
Sbjct: 631 SKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 189/407 (46%), Gaps = 30/407 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+ A YN +L          +  ++FD+M   G  PD+++++ +I + AR    +  +  
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   GI      +  L+  +   G L  A  +       R ++      +D+  Y++
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKM-------RDEMLARGCFMDVVTYNT 472

Query: 176 ENEGDDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
              G        D D +F +++              +   P+   +TTL++GY  +G + 
Sbjct: 473 FLNGLCKKKMFADADMLFNEMVE-------------RGMVPDFYTFTTLIRGYCKDGNMD 519

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             + +  AM R       PD VTY T++    KAG M RA+++  +M R  +  + I+Y 
Sbjct: 520 KALNLFEAMVRTN---LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYG 576

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            +L G+C    + +A  L  +M +   I P++V+ N LI G+    D   A  + ++M +
Sbjct: 577 TVLNGFCSSGLLPEALNLCDQMLEKG-IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            GI P   SY TL+  +   +  + A  + +EM +   ++ +I+ +N+++ G+C  G ++
Sbjct: 636 NGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG-LQFNIITYNLILNGFCAEGKMQ 694

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA++++ +M E G  P+ ATY SL NG        EA     E+ +R
Sbjct: 695 EAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 122/543 (22%), Positives = 231/543 (42%), Gaps = 43/543 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVV-VKRVRKFSDPDIVSDSKPDTA 59
           M+R   +  VK   +++S     G  G +  + +   V  K++R+ S+   +   K  + 
Sbjct: 161 MVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSV 220

Query: 60  AYNA---VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           + NA   +L      G      +++ ++   G + +V T N+M+    +  +   ++F L
Sbjct: 221 SINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFL 280

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +   G+   + T+ +L+ AY   G +E A  ++ +     R +   +   +   Y   
Sbjct: 281 SDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS--RGMEPGLLTYNAILYGLC 338

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G  D   +V  ++L   +              PN+  Y TL+        + +   + 
Sbjct: 339 KIGKYDRAKDVLIEMLQLGL-------------TPNAATYNTLLVEICRRDNILEAQEIF 385

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M R+      PD V++++++  L + G + +A     EM R G+  + + Y IL+ G+
Sbjct: 386 DEMSRR---GVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   +  A ++  EM        DVV+YN  ++G       A A   FNEM  RG+ P 
Sbjct: 443 CRNGALSDALKMRDEMLARGCF-MDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             ++TTL++ +        A  +F+ M+R   +K D V +N L++G+C+ G +  AK + 
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVR-TNLKPDKVTYNTLIDGFCKAGEMGRAKELW 560

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------CEVKKEGVNAD 468
           + M      P+  +YG++ NG   +    EAL L  ++ E+        C    +G    
Sbjct: 561 DDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRS 620

Query: 469 SDLPPPLK-----------PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            D+P   +           PD    + L D  ++ A   KA  ++  ME+ G+  N   Y
Sbjct: 621 GDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITY 680

Query: 518 KKI 520
             I
Sbjct: 681 NLI 683



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 172/379 (45%), Gaps = 45/379 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G LP + ++S+++  LA +G         L+  ++   R+     IV    PD   
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNG--------HLYQALM-HFREMERSGIV----PDNVI 434

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV---FVL 116
           Y  +++     G     L++ D+M   G   DV+TYN  +  LC    +K +      + 
Sbjct: 435 YTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLC----KKKMFADADMLF 490

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             ++E G+     TF +L+  Y   G+++ A  + +AM        K+     ++ +   
Sbjct: 491 NEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA 550

Query: 177 NE---GDDDDDDEVFEKLLPNSI------NPSSEPPLLP-----------KTFAPNSRIY 216
            E     +  DD + + ++P+ I      N      LLP           K   PN    
Sbjct: 551 GEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTC 610

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            TL+KGY   G +      L  M     N   PD  +Y T++   +K  ++++A  ++ E
Sbjct: 611 NTLIKGYCRSGDMPKAYEYLSKMI---SNGIIPDSFSYNTLIDGYLKEANLEKAFILINE 667

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M + G+  N ITYN++L G+C + ++ +A+++LR+M  +  I PD  +Y+ LI+G +  D
Sbjct: 668 MEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMI-EIGINPDGATYSSLINGHVSQD 726

Query: 337 DSAGALTFFNEMRARGIAP 355
           +   A  F +EM  RG+ P
Sbjct: 727 NMKEAFRFHDEMLQRGLVP 745


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 21/311 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN+  Y  ++ G    G   D V++   M    + A  P+H+TY T++   +K G ++ 
Sbjct: 185 APNAFSYNVVIAGLWKAGTDCDAVKLFDEM---PEKAVVPNHITYNTMIDGHIKKGDLES 241

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             ++ ++M R G+  N ITYN+LL G C+  ++ +   +L EMA   K+ PD  +Y+IL 
Sbjct: 242 GFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASR-KMVPDGFTYSILF 300

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DG     DS   L+ F E   +G+     + + L+       +   A +V   ++    +
Sbjct: 301 DGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLL 360

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           +  ++ +N L+ GYC++G +E A  I ++MK     P+  TY +L NG+    +  EA  
Sbjct: 361 QTTVI-YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHD 419

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L        E++K GVN          P  E  + L D   RA    K   I++ M+E G
Sbjct: 420 LV------IEMEKNGVN----------PSVETFNTLIDAYGRAGQLEKCFIILSDMQEKG 463

Query: 510 IPPNKTKYKKI 520
           + PN   Y  I
Sbjct: 464 LKPNVVSYGSI 474



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 208/459 (45%), Gaps = 44/459 (9%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+  +++ V++ L  +G D   ++VKLFD       +  +  +V    P+   YN +++ 
Sbjct: 186 PNAFSYNVVIAGLWKAGTD--CDAVKLFD-------EMPEKAVV----PNHITYNTMIDG 232

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
               G  +   +L+ QM   G KP+V+TYNV++    RA R      VL+ +    +   
Sbjct: 233 HIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPD 292

Query: 128 MTTFQSLVAAYVGFGDLE-----IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
             T+  L   +   GD +       E++ + ++ G    C I+     +D      G   
Sbjct: 293 GFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAY-TCSILLNGLCKD------GKIS 345

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
             +EV + L+ +         LL  T      IY TL+ GY   G +     +   M+ +
Sbjct: 346 KAEEVLQTLVNSG--------LLQTTV-----IYNTLINGYCQIGDLEGAFSIFQQMKSR 392

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PDH+TY  +++ L K   +  A  ++ EM + GV  +  T+N L+  Y +  Q+
Sbjct: 393 ---LIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQL 449

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           +K   +L +M +   ++P+VVSY  +++ F        A+   ++M  + + P    Y  
Sbjct: 450 EKCFIILSDMQEKG-LKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNA 508

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++ A+        A  + ++M +   V   IV +N+L++G C+   + EA+ +++ ++  
Sbjct: 509 IIDAYIECGSTDQAFMLAEKM-KSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNY 567

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           G  P+V +Y +L +          AL L KE+  +C +K
Sbjct: 568 GLAPDVISYNTLISACCYRSNTDRALELEKEM-WKCGIK 605



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 202/464 (43%), Gaps = 56/464 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P+V  ++ ++S L  +G  G  E+  + D +  R              PD   
Sbjct: 249 MLRHGLKPNVITYNVLLSGLCRAGRMG--ETAAVLDEMASR-----------KMVPDGFT 295

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ + +  +  G  +  L LF++  + G K    T ++++    +  +      VL+ ++
Sbjct: 296 YSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLV 355

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
             G+      + +L+  Y   GDLE A +I Q M+       ++IR  D   Y++   G 
Sbjct: 356 NSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKS------RLIRP-DHITYNALINGL 408

Query: 180 -----DDDDDDEVFEKLLPNSINPSSE----------------------PPLLPKTFAPN 212
                  +  D V E +  N +NPS E                        +  K   PN
Sbjct: 409 GKVERITEAHDLVIE-MEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPN 467

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y +++  +   G++ + V +L  M  ++     P    Y  ++ A ++ GS D+A  
Sbjct: 468 VVSYGSIVNAFCKNGKILEAVAILDDMFIKD---VLPGAQVYNAIIDAYIECGSTDQAFM 524

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +  +M   GVP + +TYN+L+KG C+Q QI +A+ELL  + +   + PDV+SYN LI   
Sbjct: 525 LAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYG-LAPDVISYNTLISAC 583

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
               ++  AL    EM   GI P+  +Y  L  +   + +      ++ +ML    V   
Sbjct: 584 CYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCS 643

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            + +N++V+ Y + G   + + + + M + G    V  Y S+ N
Sbjct: 644 GI-YNIMVDAYAKCGEESKVEALRKEMSDKGI--AVGDYTSMTN 684



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 119/531 (22%), Positives = 212/531 (39%), Gaps = 112/531 (21%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASR 108
           + + ++PDT  +N  + AC   G   + + +  +M   GA  P+  +YNV+I    +A  
Sbjct: 144 VAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGT 203

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI-VQAMREGRRDVCKIIRE 167
               V + + + E  +     T+ +++  ++  GDLE    +  Q +R G +        
Sbjct: 204 DCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLK-------- 255

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                                                      PN   Y  L+ G    G
Sbjct: 256 -------------------------------------------PNVITYNVLLSGLCRAG 272

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ +T  +L  M  ++     PD  TY+ +     + G       +  E  + GV     
Sbjct: 273 RMGETAAVLDEMASRK---MVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAY 329

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           T +ILL G C+  +I KA+E+L+ + +   ++  V+ YN LI+G+  I D  GA + F +
Sbjct: 330 TCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVI-YNTLINGYCQIGDLEGAFSIFQQ 388

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M++R I P  I+Y  L+       +   A+ +  EM ++  V   +  +N L++ Y R G
Sbjct: 389 MKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNG-VNPSVETFNTLIDAYGRAG 447

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-----LLWKEIKERCEVKK 462
            +E+   I+  M+E G  PNV +YGS+ N      K  EA+     +  K++    +V  
Sbjct: 448 QLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYN 507

Query: 463 EGVNA------------------DSDLPPPL----------------KPDEELLDAL--- 485
             ++A                   S +PP +                   EELLD+L   
Sbjct: 508 AIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNY 567

Query: 486 --------ADICVRAAFFR----KALEIVACMEEHGIPPNKTKYKKIYVEM 524
                    +  + A  +R    +ALE+   M + GI P+   Y+ ++  +
Sbjct: 568 GLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSL 618


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 208/466 (44%), Gaps = 36/466 (7%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   P+   Y A+++     G  ++ L++ D+M   G K +V+TYN MI   A+A     
Sbjct: 340 SGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAK 399

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + +   +L  G+     T+  L+  Y+   D+  A  ++  M+  +         + + 
Sbjct: 400 AMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLIS 459

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                +  D    +EV ++++ N + P             N  +Y TL+K Y+ E R   
Sbjct: 460 GLC--HSSDLQKANEVLDQMIRNGVKP-------------NVFMYGTLIKAYVQESRYEM 504

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + +L  M     N   PD   Y  ++  L +A  ++ A+ +L +M   G+  N  TY  
Sbjct: 505 AIELLKIMIA---NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
            +  Y +  +I  A+   ++M     I P+ V Y ILI G   + ++  AL+ F  M  +
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSG-IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEK 620

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P   +Y+ ++ + + + + K A  VF + L+   V  D+  +N L+ G+C+ G +E+
Sbjct: 621 GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVP-DVFLYNSLISGFCKEGDIEK 679

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A ++ + M  NG  PN+  Y +L NG+    +  +A  L+ EI+E+            DL
Sbjct: 680 ASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEK------------DL 727

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            P +     ++D       ++    +A ++   M   GI P+   Y
Sbjct: 728 VPDVVTYSTIIDGYC----KSGNLTEAFKLFDEMISKGISPDGYIY 769



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 22/322 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K   P+   YT L+ G+  + R  +   +  +M     N   P+  TYT ++   +K
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN---PNRFTYTALIDGFIK 358

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G+++ A ++  EM   G+  N +TYN ++ G  +  ++ KA  L  EM   A +EPD  
Sbjct: 359 EGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM-AGLEPDTW 417

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN+LIDG++   D A A     EM+AR + P+  +Y+ L+     SS  + AN+V D+M
Sbjct: 418 TYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +R+  VK ++  +  L++ Y +    E A  +++ M  NG  P++  Y  L  G+  A+K
Sbjct: 478 IRNG-VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKK 536

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA +L  ++ E+                 +KP+     A  ++  ++   + A     
Sbjct: 537 VEEAKMLLVDMGEK----------------GIKPNAHTYGAFINLYSKSGEIQVAERYFK 580

Query: 504 CMEEHGIPPNKTKYKKIYVEMH 525
            M   GI PN   Y  I ++ H
Sbjct: 581 DMLSSGIVPNNVIY-TILIKGH 601



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 189/435 (43%), Gaps = 52/435 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y+ +++   +    +K  ++ DQM   G KP+V  Y  +IK   + SR  + + +
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL 508

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ ++  G+   +  +  L+        +E A+ ++  M E             +  YS 
Sbjct: 509 LKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSK 568

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G+    +  F+ +L + I              PN+ IYT L+KG+ +   V +TV  
Sbjct: 569 S--GEIQVAERYFKDMLSSGI-------------VPNNVIYTILIKGHCD---VGNTVEA 610

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   +   +    PD   Y+ ++ +L K G    A  V  +  + GV  +   YN L+ G
Sbjct: 611 LSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG 670

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C++  I+KA +L  EM  +  I P++V YN LI+G   + +   A   F+E+  + + P
Sbjct: 671 FCKEGDIEKASQLYDEMLHNG-INPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVP 729

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR-----DPRVKVDIV---------------- 394
             ++Y+T++  +  S     A K+FDEM+      D  +   ++                
Sbjct: 730 DVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLF 789

Query: 395 ------------AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
                       A+N L++ +C+ G V EA+ + + M +    PN+ TY  L +    A 
Sbjct: 790 HEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAE 849

Query: 443 KPGEALLLWKEIKER 457
              EA  L+ +++ R
Sbjct: 850 MMEEAEQLFLDMETR 864



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/520 (22%), Positives = 221/520 (42%), Gaps = 50/520 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +  +P V  ++ V+      GD            V+K     S+ +   + KP+   
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGD------------VIKGKMVLSEME--KECKPNLFT 278

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA +      G   + L++   M E G  PD  TY +++    +  R      + E + 
Sbjct: 279 YNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMP 338

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     T+ +L+  ++  G++E      +A+R     + + ++ L++  Y++   G 
Sbjct: 339 SSGLNPNRFTYTALIDGFIKEGNIE------EALRIKDEMITRGLK-LNVVTYNAMIGGI 391

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               +      L N         +L     P++  Y  L+ GY+    ++    +L  M+
Sbjct: 392 AKAGEMAKAMSLFNE--------MLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            ++     P   TY+ ++S L  +  + +A +VL +M R GV  N   Y  L+K Y Q+ 
Sbjct: 444 ARKLT---PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           + + A ELL+ M  +  + PD+  YN LI G         A     +M  +GI P   +Y
Sbjct: 501 RYEMAIELLKIMIANG-VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              +  ++ S + ++A + F +ML    V  +++ + +L++G+C +G   EA    + M 
Sbjct: 560 GAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVI-YTILIKGHCDVGNTVEALSTFKCML 618

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           E G  P++  Y ++ + +S   K  EA+ ++ +                 L   + PD  
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKF----------------LKTGVVPDVF 662

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L ++L     +     KA ++   M  +GI PN   Y  +
Sbjct: 663 LYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/499 (22%), Positives = 213/499 (42%), Gaps = 70/499 (14%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P    +S ++S L  S D             +++  +  D  I +  KP+   Y  ++ A
Sbjct: 449 PSPFTYSVLISGLCHSSD-------------LQKANEVLDQMIRNGVKPNVFMYGTLIKA 495

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
                + +  ++L   M   G  PD+  YN +I    RA +      +L  + E GI   
Sbjct: 496 YVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPN 555

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             T+ + +  Y   G++++AE   + M         +I  + ++ +         D    
Sbjct: 556 AHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHC--------DVGNT 607

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
            E L       S+   +L K   P+ R Y+ ++      G+   T   +G   +      
Sbjct: 608 VEAL-------STFKCMLEKGLIPDIRAYSAIIHSLSKNGK---TKEAMGVFLKFLKTGV 657

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            PD   Y +++S   K G +++A Q+  EM   G+  N + YN L+ G C+  ++ KA+E
Sbjct: 658 VPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARE 717

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM--- 364
           L  E+ ++  + PDVV+Y+ +IDG+    +   A   F+EM ++GI+P    Y  L+   
Sbjct: 718 LFDEI-EEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGC 776

Query: 365 -------KAFALSSQPKL------------------------ANKVFDEMLRDPRVKVDI 393
                  KA +L  + +                         A ++FD+M+ D ++  +I
Sbjct: 777 GKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMV-DKKLTPNI 835

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V + +L++ Y +  ++EEA+++   M+     PN  TY SL    +      + + L+K+
Sbjct: 836 VTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKD 895

Query: 454 IKER---CEVKKEGVNADS 469
           ++ R   C+    GV A +
Sbjct: 896 MEARGIACDAIAYGVMASA 914



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 190/450 (42%), Gaps = 40/450 (8%)

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
           F +++  M E    PDV TY  +IK   +         VL   +E      + T+ + + 
Sbjct: 226 FWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSE-MEKECKPNLFTYNAFIG 284

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
                G ++ A  + + M E           L ++ +  +      +   +FE +  + +
Sbjct: 285 GLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKR--SKEAKLIFESMPSSGL 342

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
           N             PN   YT L+ G++ EG + + +R+   M  +       + VTY  
Sbjct: 343 N-------------PNRFTYTALIDGFIKEGNIEEALRIKDEMITR---GLKLNVVTYNA 386

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  + KAG M +A  +  EM   G+  +  TYN+L+ GY +   + KA ELL EM    
Sbjct: 387 MIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEM-KAR 445

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           K+ P   +Y++LI G     D   A    ++M   G+ P    Y TL+KA+   S+ ++A
Sbjct: 446 KLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMA 505

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            ++   M+ +  V  D+  +N L+ G CR   VEEAK ++  M E G  PN  TYG+  N
Sbjct: 506 IELLKIMIANG-VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
              L  K GE  +  +  K+              L   + P+  +   L           
Sbjct: 565 ---LYSKSGEIQVAERYFKDM-------------LSSGIVPNNVIYTILIKGHCDVGNTV 608

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
           +AL    CM E G+ P+   Y  I   +HS
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAI---IHS 635



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/419 (20%), Positives = 183/419 (43%), Gaps = 36/419 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+   +   ++  + SG+    E            R F D  + S   P+   
Sbjct: 547 MGEKGIKPNAHTYGAFINLYSKSGEIQVAE------------RYFKDM-LSSGIVPNNVI 593

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++    ++G   + L  F  M E G  PD+  Y+ +I   ++  +    + V  + L
Sbjct: 594 YTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL 653

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+   +  + SL++ +   GD+E A  +   M     +   ++    +        G+
Sbjct: 654 KTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKL--GE 711

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E+F+++               K   P+   Y+T++ GY   G +++  ++   M 
Sbjct: 712 VTKARELFDEIEE-------------KDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMI 758

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD   Y  ++    K G++++A  +  E  +  V  +   +N L+  +C+  
Sbjct: 759 SK---GISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHG 814

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +A+EL  +M D  K+ P++V+Y ILID +   +    A   F +M  R I P  ++Y
Sbjct: 815 KVIEARELFDDMVDK-KLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTY 873

Query: 361 TTLMKAF-ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           T+L+ ++  + ++ K+ + +F +M     +  D +A+ ++   YC+ G   EA +++ +
Sbjct: 874 TSLLLSYNQIGNRFKMIS-LFKDM-EARGIACDAIAYGVMASAYCKEGKSLEALKLLNK 930



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 147/356 (41%), Gaps = 48/356 (13%)

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV--- 233
           N G     D + EKLL      + +PPL          I  +L++ Y   G  + TV   
Sbjct: 132 NSGLIHQADNMLEKLLQ-----TRKPPL---------EILDSLVRCYREFGGSNLTVFDI 177

Query: 234 -----RMLGAMRRQED-------NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
                R+LG +                P  +    ++  L+KA  M    +V   M    
Sbjct: 178 FIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAK 237

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           +  +  TY  ++K +C+   + K K +L EM  + K  P++ +YN  I G         A
Sbjct: 238 IVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECK--PNLFTYNAFIGGLCQTGAVDEA 295

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L     M  +G+ P   +YT L+  F    + K A  +F+ M     +  +   +  L++
Sbjct: 296 LEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM-PSSGLNPNRFTYTALID 354

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           G+ + G +EEA RI + M   G   NV TY ++  GI+ A +  +A+ L+ E+       
Sbjct: 355 GFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM------- 407

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                    L   L+PD    + L D  +++    KA E++A M+   + P+   Y
Sbjct: 408 ---------LMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 163/403 (40%), Gaps = 47/403 (11%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVV-------- 39
            ML  G +P ++A+S ++  L+ +G               G V  V L++ ++        
Sbjct: 617  MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 40   -KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             ++  +  D  + +   P+   YN ++N    LG+  K  +LFD++ E    PDV+TY+ 
Sbjct: 677  IEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYST 736

Query: 99   MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
            +I    ++        + + ++  GI+     +  L+      G+LE A ++    ++  
Sbjct: 737  IIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS 796

Query: 159  RDVCKIIRELDLEDYSSEN---EGDDDDDDEVFEKLLPNSINPS--------------SE 201
                     L ++ +       E  +  DD V +KL PN +  +              +E
Sbjct: 797  VGSLSAFNSL-IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAE 855

Query: 202  PPLL---PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
               L    +   PN+  YT+L+  Y    ++ +  +M+   +  E      D + Y  + 
Sbjct: 856  QLFLDMETRNIIPNTLTYTSLLLSY---NQIGNRFKMISLFKDMEARGIACDAIAYGVMA 912

Query: 259  SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
            SA  K G    A ++L +    G+      ++ L+   C++ QI    ELL EM  + ++
Sbjct: 913  SAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKE-EL 971

Query: 319  EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
                 + N L+ GF    +   A      M+  G  PT +S T
Sbjct: 972  SLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLT 1014


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 187/401 (46%), Gaps = 20/401 (4%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   YN ++NA    G  ++  QL +     G +P +LTYN ++    +  +      VL
Sbjct: 291 DIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVL 350

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +L++G+T    T+ +L+       ++  A+ I   M   RR V       DL  +SS 
Sbjct: 351 IEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEM--SRRGVLP-----DLVSFSSL 403

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G    +  +++ L+       S          P++ IYT L+ G+   G +SD ++M 
Sbjct: 404 -IGVLARNGHLYQALMHFREMERS-------GIVPDNVIYTILIDGFCRNGALSDALKMR 455

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M  +       D VTY T ++ L K      A  +  EM   G+  +  T+  L++GY
Sbjct: 456 DEMLAR---GCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   +DKA  L   M     ++PD V+YN LIDGF    +   A   +++M  + I P 
Sbjct: 513 CKDGNMDKALNLFEAMV-RTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPD 571

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ISY T++  F  S     A  + D+ML +  ++ ++V  N L++GYCR G + +A   +
Sbjct: 572 HISYGTVLNGFCSSGLLPEALNLCDQML-EKGIRPNLVTCNTLIKGYCRSGDMPKAYEYL 630

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +M  NG  P+  +Y +L +G        +A +L  E+++R
Sbjct: 631 SKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 189/407 (46%), Gaps = 30/407 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+ A YN +L          +  ++FD+M   G  PD+++++ +I + AR    +  +  
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   GI      +  L+  +   G L  A  +       R ++      +D+  Y++
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKM-------RDEMLARGCFMDVVTYNT 472

Query: 176 ENEGDDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
              G        D D +F +++              +   P+   +TTL++GY  +G + 
Sbjct: 473 FLNGLCKKKMFADADMLFNEMVE-------------RGMVPDFYTFTTLIRGYCKDGNMD 519

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             + +  AM R       PD VTY T++    KAG M RA+++  +M R  +  + I+Y 
Sbjct: 520 KALNLFEAMVRTN---LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYG 576

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            +L G+C    + +A  L  +M +   I P++V+ N LI G+    D   A  + ++M +
Sbjct: 577 TVLNGFCSSGLLPEALNLCDQMLEKG-IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            GI P   SY TL+  +   +  + A  + +EM +   ++ +I+ +N+++ G+C  G ++
Sbjct: 636 NGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG-LQFNIITYNLILNGFCAEGKMQ 694

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA++++ +M E G  P+ ATY SL NG        EA     E+ +R
Sbjct: 695 EAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/543 (22%), Positives = 231/543 (42%), Gaps = 43/543 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVV-VKRVRKFSDPDIVSDSKPDTA 59
           M+R   +  VK   +++S     G  G +  + +   V  K++R+ S+   +   K  + 
Sbjct: 161 MVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSV 220

Query: 60  AYNA---VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           + NA   +L      G      +++ ++   G + +V T N+M+    +  +   ++F L
Sbjct: 221 SINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFL 280

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +   G+   + T+ +L+ AY   G +E A  ++ +     R +   +   +   Y   
Sbjct: 281 SDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS--RGMEPGLLTYNAILYGLC 338

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G  D   +V  ++L   +              PN+  Y TL+        + +   + 
Sbjct: 339 KIGKYDRAKDVLIEMLQLGL-------------TPNAATYNTLLVEICRRDNILEAQEIF 385

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M R+      PD V++++++  L + G + +A     EM R G+  + + Y IL+ G+
Sbjct: 386 DEMSRR---GVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   +  A ++  EM        DVV+YN  ++G       A A   FNEM  RG+ P 
Sbjct: 443 CRNGALSDALKMRDEMLARGCF-MDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             ++TTL++ +        A  +F+ M+R   +K D V +N L++G+C+ G +  AK + 
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVR-TNLKPDKVTYNTLIDGFCKAGEMGRAKELW 560

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------CEVKKEGVNAD 468
           + M      P+  +YG++ NG   +    EAL L  ++ E+        C    +G    
Sbjct: 561 DDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRS 620

Query: 469 SDLPPPLK-----------PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            D+P   +           PD    + L D  ++ A   KA  ++  ME+ G+  N   Y
Sbjct: 621 GDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITY 680

Query: 518 KKI 520
             I
Sbjct: 681 NLI 683



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 172/379 (45%), Gaps = 45/379 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G LP + ++S+++  LA +G         L+  ++   R+     IV    PD   
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNG--------HLYQALM-HFREMERSGIV----PDNVI 434

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV---FVL 116
           Y  +++     G     L++ D+M   G   DV+TYN  +  LC    +K +      + 
Sbjct: 435 YTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLC----KKKMFADADMLF 490

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             ++E G+     TF +L+  Y   G+++ A  + +AM        K+     ++ +   
Sbjct: 491 NEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA 550

Query: 177 NE---GDDDDDDEVFEKLLPNSI------NPSSEPPLLP-----------KTFAPNSRIY 216
            E     +  DD + + ++P+ I      N      LLP           K   PN    
Sbjct: 551 GEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTC 610

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            TL+KGY   G +      L  M     N   PD  +Y T++   +K  ++++A  ++ E
Sbjct: 611 NTLIKGYCRSGDMPKAYEYLSKMI---SNGIIPDSFSYNTLIDGYLKEANLEKAFILINE 667

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M + G+  N ITYN++L G+C + ++ +A+++LR+M  +  I PD  +Y+ LI+G +  D
Sbjct: 668 MEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMI-EIGINPDGATYSSLINGHVSQD 726

Query: 337 DSAGALTFFNEMRARGIAP 355
           +   A  F +EM  RG+ P
Sbjct: 727 NMKEAFRFHDEMLQRGLVP 745


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 221/483 (45%), Gaps = 42/483 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  VL   A + K    + L+ +M   G   D+ ++ ++I    R SR  L + +
Sbjct: 77  PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 136

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + T  SL+  +      + A ++V +M +G   V  ++    + +   
Sbjct: 137 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM-DGFGFVPNVVIYNTVINGLC 195

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +N  D ++  EVF  +    I               ++  Y TL+ G  N GR +D  R+
Sbjct: 196 KNR-DLNNALEVFYCMEKKGIRA-------------DAVTYNTLISGLSNSGRWTDAARL 241

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M +++ +   P+ + +T ++   VK G++  AR +  EM R  V  N  TYN L+ G
Sbjct: 242 LRDMVKRKID---PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C    +  AK +   M       PDVV+YN LI GF         +  F EM  +G+  
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVG 357

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +Y TL+  +  + +  +A KVF+ M+ D  V  DIV +N+L++  C  G +E+A  +
Sbjct: 358 DAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIVTYNILLDCLCNNGKIEKALVM 416

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +E ++++    ++ TY  +  G+    K  EA  L++ +       ++GV          
Sbjct: 417 VEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSL------TRKGV---------- 460

Query: 476 KPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI----YVEMHSRMFT 530
           KPD    +  ++ +C R    R+A ++   M+E G  P++  Y +     Y  + + +  
Sbjct: 461 KPDAIAYITMISGLC-RKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIK 519

Query: 531 SKH 533
           + H
Sbjct: 520 AAH 522



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 176/380 (46%), Gaps = 26/380 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL- 112
           +P      ++LN      + ++ + L D M  FG  P+V+ YN +I  LC      + L 
Sbjct: 146 RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 205

Query: 113 -VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
             + +E+    GI     T+ +L++     G    A  +++ M + + D   I     ++
Sbjct: 206 VFYCMEK---KGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALID 262

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            +  E  G+  +   ++++++  S+              PN   Y +L+ G+   G + D
Sbjct: 263 TFVKE--GNLLEARNLYKEMIRRSV-------------VPNVFTYNSLINGFCIHGCLGD 307

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              M   M  +      PD VTY T+++   K+  ++   ++  EMT  G+  +  TYN 
Sbjct: 308 AKYMFDLMVSK---GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GYCQ  +++ A+++   M  D  + PD+V+YNIL+D          AL    +++  
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS 423

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            +    I+Y  +++    + + K A  +F  + R   VK D +A+  ++ G CR GL  E
Sbjct: 424 EMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKG-VKPDAIAYITMISGLCRKGLQRE 482

Query: 412 AKRIIERMKENGFYPNVATY 431
           A ++  RMKE+GF P+   Y
Sbjct: 483 ADKLCRRMKEDGFMPSERIY 502



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A + F EM      P+ + +T ++   A  ++  +   ++ +M  +  +  D+ ++ +L+
Sbjct: 63  AFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKM-ENLGISHDLYSFTILI 121

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             +CR   +  A  ++ +M + GF P++ T GSL NG     +  EA+ L          
Sbjct: 122 HCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSL---------- 171

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  DS       P+  + + + +   +      ALE+  CME+ GI  +   Y  +
Sbjct: 172 ------VDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTL 225


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/498 (22%), Positives = 216/498 (43%), Gaps = 86/498 (17%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P +K  +  +S L  + +         F+   +  R  S+      + PD  ++ 
Sbjct: 179 RKGTFPSLKTCNFXLSSLVKANE---------FEKCCEVFRVMSE-----GACPDVFSFT 224

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-----------------KLCAR 105
            V+NA    GK +  ++LF +M + G  P+V+TYN +I                 K+  +
Sbjct: 225 NVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVK 284

Query: 106 ASRKHLLVF------------------VLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
             + +L  +                  +L+ ++  G    +  F +L+  Y   G++E A
Sbjct: 285 GVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGA 344

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE----VFEKLLPN--SINPSS- 200
             I   M      + K I    +  YS        D  E      E++L +  SI+P + 
Sbjct: 345 LKIKDVM------ISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNC 398

Query: 201 -------------------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                                 +L + F P+  + T L+ G   +G+  +   +     R
Sbjct: 399 YSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATEL---WFR 455

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             +  S    VT   ++  L  AG +  A +++ EM   G+P +RITYN L+ G+C + +
Sbjct: 456 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 515

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ++    L  EM     I+PD+ +YN L+ G   +     A+  ++E +A G+     +Y 
Sbjct: 516 VEGCFRLREEMTKRG-IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYG 574

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            +M+ +  +++ +    +F+E+L   +++++ + +N++++ +C+ G V  A +++E MK 
Sbjct: 575 IMMEGYCKANRIEDVENLFNELL-SKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKS 633

Query: 422 NGFYPNVATYGSLANGIS 439
            G  PN ATY SL +G+ 
Sbjct: 634 KGILPNCATYSSLIHGVC 651



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 144/311 (46%), Gaps = 19/311 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   YNA++    N GK +   +L ++M + G +PD+ TYN +++      +    + + 
Sbjct: 499 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLW 558

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           +     G+   + T+  ++  Y     +E  E +   +   + ++  I+  + ++ +   
Sbjct: 559 DEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHC-- 616

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                + +     +LL N         +  K   PN   Y++L+ G  N G V D   ++
Sbjct: 617 ----QNGNVAAALQLLEN---------MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 663

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             MR++      P+ V YT ++    K G MD A     EM    +  N+ TY +++ GY
Sbjct: 664 DEMRKE---GFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 720

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   ++KA  LL +M +   I PDVV+YN+L +GF   +D   A    ++M   G+   
Sbjct: 721 CKLGNMEKANNLLIKMKESG-IVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVD 779

Query: 357 KISYTTLMKAF 367
           +I+YTTL+  +
Sbjct: 780 EITYTTLVHGW 790



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 153/352 (43%), Gaps = 23/352 (6%)

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLE-RILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           D+L   ++  LC     KHL    L  R+LE G      T  +L+    G G L  A  I
Sbjct: 430 DLLLTMLVCGLCKDG--KHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRI 487

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
           V+ M E    + +I     +  +   NEG  +    + E++    I P            
Sbjct: 488 VKEMLERGLPMDRITYNALILGFC--NEGKVEGCFRLREEMTKRGIQP------------ 533

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
            +   Y  L++G  N G++ D +++    +    +    +  TY  ++    KA  ++  
Sbjct: 534 -DIYTYNFLLRGLCNVGKLDDAIKLWDEFKA---SGLISNIHTYGIMMEGYCKANRIEDV 589

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +  E+    +  N I YNI++K +CQ   +  A +LL  M     I P+  +Y+ LI 
Sbjct: 590 ENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKG-ILPNCATYSSLIH 648

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G   I     A    +EMR  G  P  + YT L+  +    Q   A   + EM+    + 
Sbjct: 649 GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI-SFNIH 707

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            +   + ++++GYC++G +E+A  ++ +MKE+G  P+V TY  L NG   A 
Sbjct: 708 PNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKAN 759



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 170/374 (45%), Gaps = 36/374 (9%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA-----RASRKHLLVFVLERILEMGIT 125
           GK  +  +L+ ++ E G+    +T N +I  LC       ASR      +++ +LE G+ 
Sbjct: 444 GKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASR------IVKEMLERGLP 497

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
           +   T+ +L+  +   G +E    + + M   +R +   I   +       N G  DD  
Sbjct: 498 MDRITYNALILGFCNEGKVEGCFRLREEMT--KRGIQPDIYTYNFLLRGLCNVGKLDDAI 555

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM--RRQE 243
           +++++   + +               N   Y  +M+GY    R+ D   +   +  ++ E
Sbjct: 556 KLWDEFKASGL-------------ISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKME 602

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
            N+     + Y  ++ A  + G++  A Q+L  M   G+  N  TY+ L+ G C    ++
Sbjct: 603 LNS-----IVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVE 657

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            AK L+ EM  +  + P+VV Y  LI G+  +     A + + EM +  I P K +YT +
Sbjct: 658 DAKHLIDEMRKEGFV-PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVM 716

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +  +      + AN +  +M ++  +  D+V +N+L  G+C+   ++ A ++ ++M   G
Sbjct: 717 IDGYCKLGNMEKANNLLIKM-KESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEG 775

Query: 424 FYPNVATYGSLANG 437
              +  TY +L +G
Sbjct: 776 LPVDEITYTTLVHG 789


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 140/269 (52%), Gaps = 18/269 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD V +TT++  + + G  + A  +L EM  +G   + +T N L++GYC Q +IDK +++
Sbjct: 108 PDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKI 167

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
              M     ++PDV SY+I I+G+  ++    A+  F+EM  RG+ P  ++Y TL+KA  
Sbjct: 168 FHLMVSKG-LKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALC 226

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + +P+ A  +F +M     +  DI+A++ L++G+C+ G ++E   + + M+     P++
Sbjct: 227 QALRPRDAQVLFRKMCA-CGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDL 285

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
             Y  + NG+  +RK  +A    KE+  R  V  EG          LKPD     AL D 
Sbjct: 286 VVYTIIINGMCRSRKVKDA----KEVLSRLIV--EG----------LKPDVHTYTALVDG 329

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             R     +AL +   MEE G  P    Y
Sbjct: 330 LCREGSIIEALRLFRKMEEDGCMPGSCSY 358



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 128/252 (50%), Gaps = 5/252 (1%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           L + F P+  I+TTL+ G     R+  T    G ++        PD VT  +++      
Sbjct: 102 LKRGFKPDVVIFTTLIDGVC---RIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQ 158

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +D+ R++   M   G+  +  +Y+I + GYC+  +ID+A EL  EM+    + P+ V+
Sbjct: 159 GKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRG-VVPNAVT 217

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN LI           A   F +M A G++P  ++Y+TL+  F           +F EM 
Sbjct: 218 YNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQ 277

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           R   VK D+V + +++ G CR   V++AK ++ R+   G  P+V TY +L +G+      
Sbjct: 278 RR-LVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSI 336

Query: 445 GEALLLWKEIKE 456
            EAL L+++++E
Sbjct: 337 IEALRLFRKMEE 348



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 5/248 (2%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+     +LM+GY ++G++    ++   M  +      PD  +Y+  ++   K   +D 
Sbjct: 142 VPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSK---GLKPDVYSYSIFINGYCKVEKIDE 198

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A ++  EM+  GV  N +TYN L+K  CQ L+   A+ L R+M     + PD+++Y+ L+
Sbjct: 199 AMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCA-CGLSPDILAYSTLL 257

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DGF    +    L  F EM+ R + P  + YT ++     S + K A +V   ++ +  +
Sbjct: 258 DGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEG-L 316

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           K D+  +  LV+G CR G + EA R+  +M+E+G  P   +Y  L  G          + 
Sbjct: 317 KPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQ 376

Query: 450 LWKEIKER 457
           L  E+ +R
Sbjct: 377 LIHEMADR 384



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 150/339 (44%), Gaps = 44/339 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K +    + ++N    L        +F +  + G KPDV+ +  +I    R  +  L   
Sbjct: 72  KYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAG 131

Query: 115 VLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           +L+   EMG+  C+    T  SL+  Y   G ++    I   M      V K ++  D+ 
Sbjct: 132 LLK---EMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLM------VSKGLKP-DVY 181

Query: 172 DYSSENEG-----DDDDDDEVFEKL-----LPNSIN-------------PSSEPPLLPKT 208
            YS    G       D+  E+F+++     +PN++              P     L  K 
Sbjct: 182 SYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKM 241

Query: 209 FA----PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
            A    P+   Y+TL+ G+  +G + + + +   M+R+      PD V YT +++ + ++
Sbjct: 242 CACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRR---LVKPDLVVYTIIINGMCRS 298

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
             +  A++VL+ +   G+  +  TY  L+ G C++  I +A  L R+M +D  + P   S
Sbjct: 299 RKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCM-PGSCS 357

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           YN+L+ G +  +D++  +   +EM  RG     ++ T L
Sbjct: 358 YNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFL 396



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 113/292 (38%), Gaps = 54/292 (18%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           + +VRK     +    KPD  +Y+  +N    + K  + ++LFD+M   G  P+ +TYN 
Sbjct: 161 IDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNT 220

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +IK   +A R      +  ++   G++  +  + +L+  +   G+L+    + Q M+  R
Sbjct: 221 LIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQ--R 278

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
           R V                                                 P+  +YT 
Sbjct: 279 RLV------------------------------------------------KPDLVVYTI 290

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++ G     +V D   +L    R       PD  TYT +V  L + GS+  A ++  +M 
Sbjct: 291 IINGMCRSRKVKDAKEVLS---RLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKME 347

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             G      +YN+LL+G  Q        +L+ EMAD      D V+   L D
Sbjct: 348 EDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRG-FYADAVTRTFLKD 398



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 17/206 (8%)

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           D   +P ++ +N L+   + +      ++ F EM  RGI     + + L+  F       
Sbjct: 33  DRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVD 92

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
               VF + L+    K D+V +  L++G CR+G  E A  +++ M   G  P+V T  SL
Sbjct: 93  YGFSVFGKTLKRG-FKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSL 151

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
             G     K  +   ++  +  +                 LKPD        +   +   
Sbjct: 152 MRGYCSQGKIDKVRKIFHLMVSK----------------GLKPDVYSYSIFINGYCKVEK 195

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
             +A+E+   M   G+ PN   Y  +
Sbjct: 196 IDEAMELFDEMSHRGVVPNAVTYNTL 221


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 199/426 (46%), Gaps = 30/426 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP   + N++L+     G+    + ++DQM      PDV T  +M+    +A +    V 
Sbjct: 28  KPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVERAVE 87

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE---------------GRR 159
            +  + ++G  L   ++ SLV  YV  GD+E A+ +++ M E               G  
Sbjct: 88  FVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYC 147

Query: 160 DVC------KIIRELDLEDYSSENEGDDDDDDEVFEKL--LPNSINPSSEPPLLPKTFAP 211
             C      K++RE++ ED    +E       + + K+  + ++I    E  +L      
Sbjct: 148 KQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDE--MLKVGLKM 205

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N  +  +L+ GY   G+V +  R+L  MR+ +     PD  +Y T+V    + G   +A 
Sbjct: 206 NLFVCNSLINGYCKNGQVHEGERLLMCMRKLD---LKPDSYSYCTLVDGYCRDGLSSKAF 262

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            V  +M R G+    +TYN LLKG C+      A  L   M     + P+ V Y  L+DG
Sbjct: 263 NVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRG-VTPNEVGYCTLLDG 321

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
              + D + ALT ++++ ARGI  +  ++ T++       +   A + F  M  +   K 
Sbjct: 322 LFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRM-EELGCKP 380

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D + +  L +GYC++G VEEA +I E+M++   +P++  Y SL  G+  ++K  + + L 
Sbjct: 381 DGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLL 440

Query: 452 KEIKER 457
            E+  R
Sbjct: 441 AEMDTR 446



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 24/304 (7%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++K Y  +G V + + +   M +       P   +  +++S LVK G    A  V  +M 
Sbjct: 2   ILKVYAEKGMVKNALHVFDNMGKY---GRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMR 58

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R+ +  +  T  I++  YC+  ++++A E +REM +    E + VSYN L+DG++ + D 
Sbjct: 59  RLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREM-EKLGFELNAVSYNSLVDGYVSLGDI 117

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
            GA      M  +G+   K++ T L+K +    + + A KV  EM ++  V VD  A+  
Sbjct: 118 EGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGA 177

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK--PGEALLLWKEIKE 456
           L++GYC++G + +A R+ + M + G   N+    SL NG     +   GE LL+      
Sbjct: 178 LIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLM------ 231

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
            C  K +           LKPD      L D   R     KA  +   M   GI P    
Sbjct: 232 -CMRKLD-----------LKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVT 279

Query: 517 YKKI 520
           Y  +
Sbjct: 280 YNTL 283



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 108/492 (21%), Positives = 200/492 (40%), Gaps = 72/492 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P V  ++T++  L   GD    ++++L+ ++++R              P+   
Sbjct: 268 MLRKGIEPTVVTYNTLLKGLCRFGD--YKDALRLWHLMLQR-----------GVTPNEVG 314

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+    +G   + L L+D +   G    +  +N MI    +           +R+ 
Sbjct: 315 YCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRME 374

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E+G      T+++L   Y   G++E A  I + M +             +E Y+S   G 
Sbjct: 375 ELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEK-------EEIFPSIEMYNSLIVG- 426

Query: 181 DDDDDEVF-EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                 +F  K +   I+  +E     +  +PN   Y  L+ G+ ++GR+    +   A 
Sbjct: 427 ------LFTSKKISKLIDLLAEMD--TRGLSPNVVTYGALIAGWCDQGRLD---KAFSAY 475

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT--------------------- 278
                    P+ +  + +VS+L + G +D A  +L +M                      
Sbjct: 476 FEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRK 535

Query: 279 ---------------RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
                          +  +P N + YNI + G C+  +++ A+     ++      PD  
Sbjct: 536 LDCWKIADTLDESAIKFSLP-NNVVYNIAMAGLCKSGKVNDARRFFLGLSH-GSFTPDNF 593

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI GF        A    +EM  +G+ P   +Y  L+     S     A ++FD++
Sbjct: 594 TYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKL 653

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                +  ++V +N+L++GYC+ G   EA  +  +M + G  P++ TY SL NG      
Sbjct: 654 HLKGLIP-NVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSD 712

Query: 444 PGEALLLWKEIK 455
             EA+ L  E+K
Sbjct: 713 VEEAMKLLNEMK 724



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 153/352 (43%), Gaps = 32/352 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN+++       K  K + L  +M   G  P+V+TY  +I       R       
Sbjct: 415 PSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSA 474

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              ++  G    +     +V++    G ++ A  ++Q M     D   ++    LED+ +
Sbjct: 475 YFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMV----DFDLVLDHRCLEDFQN 530

Query: 176 EN-------EGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-----------------FAP 211
            +       +  D  D+   +  LPN++  +     L K+                 F P
Sbjct: 531 ADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTP 590

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           ++  Y TL+ G+   G V++   +   M  +      P+  TY  +++ L K+G +DRAR
Sbjct: 591 DNFTYCTLIHGFSAAGYVNEAFNLRDEMVNK---GLVPNITTYNALLNGLCKSGYLDRAR 647

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++  ++   G+  N +TYNIL+ GYC+     +A +L  +M  +  I P +++Y+ LI+G
Sbjct: 648 RLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEG-ISPSIITYSSLING 706

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           F    D   A+   NEM+A  +  T  +++ L++        K  +K+ + M
Sbjct: 707 FCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKKMSKLHNMM 758



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/496 (22%), Positives = 197/496 (39%), Gaps = 45/496 (9%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHL 111
           D KPD+ +Y  +++     G   K   + DQM   G +P V+TYN ++K LC     K  
Sbjct: 237 DLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDA 296

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           L  +   +L+ G+T     + +L+      GD   A T+   +    R + K I   +  
Sbjct: 297 LR-LWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILA--RGINKSIYAFNTM 353

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                  G+ D   E F+++            L  K   P+   Y TL  GY   G V +
Sbjct: 354 INGLCKMGEMDGAKETFKRM----------EELGCK---PDGITYRTLSDGYCKVGNVEE 400

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
                    + E     P    Y +++  L  +  + +   +LAEM   G+  N +TY  
Sbjct: 401 A---FKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGA 457

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G+C Q ++DKA     EM       P+V+  + ++     +    G +   N +  +
Sbjct: 458 LIAGWCDQGRLDKAFSAYFEMIGKG-FAPNVIICSKIVSSLYRL----GRIDEANMLLQK 512

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI---VAWNMLVEGYCRMGL 408
            +    +     ++ F  +   KL      + L +  +K  +   V +N+ + G C+ G 
Sbjct: 513 MVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGK 572

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           V +A+R    +    F P+  TY +L +G S A    EA  L  E+             +
Sbjct: 573 VNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEM------------VN 620

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
             L P +     LL+ L     ++ +  +A  +   +   G+ PN   Y  I ++ + + 
Sbjct: 621 KGLVPNITTYNALLNGLC----KSGYLDRARRLFDKLHLKGLIPNVVTY-NILIDGYCKS 675

Query: 529 FTSKHASQARQDRRRE 544
            + + A   R    +E
Sbjct: 676 GSPREALDLRGKMLKE 691



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 122/334 (36%), Gaps = 75/334 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPVESVKL--FDVVV--KRVRKFSDPDI---- 50
           M+  G+ P+V   S +VS L   G  D+  +   K+  FD+V+  + +  F + DI    
Sbjct: 478 MIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLD 537

Query: 51  ------------VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
                       +  S P+   YN  +      GK     + F  +      PD  TY  
Sbjct: 538 CWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCT 597

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I   + A   +    + + ++  G+   +TT+ +L+      G L+ A          R
Sbjct: 598 LIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRA----------R 647

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
           R                           +F+K             L  K   PN   Y  
Sbjct: 648 R---------------------------LFDK-------------LHLKGLIPNVVTYNI 667

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ GY   G   + + + G M ++      P  +TY+++++   K   ++ A ++L EM 
Sbjct: 668 LIDGYCKSGSPREALDLRGKMLKE---GISPSIITYSSLINGFCKQSDVEEAMKLLNEMK 724

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
              V     T++ L++G  Q   + K  +L   M
Sbjct: 725 ASNVDQTIATFSKLVEGCIQHGDVKKMSKLHNMM 758


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 218/491 (44%), Gaps = 49/491 (9%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           KF +  +     PD     +++     +GK KK   + + + + GA PDV+TYNV+I   
Sbjct: 78  KFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGY 137

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV--QAMREGRRDV 161
            ++      + VL+R   M +   + T+ +++      G L+ A  ++  Q  +E   DV
Sbjct: 138 CKSGEIDNALQVLDR---MNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDV 194

Query: 162 ----------CK---IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
                     CK   + + + L D   E        D V   +L N I          K 
Sbjct: 195 ITYTILIEATCKESGVGQAMKLLD---EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 251

Query: 209 F--------APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
                     PN   +  +++   + GR  D  ++L  M R+      P  VT+  +++ 
Sbjct: 252 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK---GCSPSVVTFNILINF 308

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L + G + RA  +L +M   G   N ++YN LL G+C++ ++D+A E L  M       P
Sbjct: 309 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG-CYP 367

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D+V+YN L+           A+   N++ ++G +P  I+Y T++   +   + + A K+ 
Sbjct: 368 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLL 427

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           DEM R   +K DI+ ++ LV G  R G V+EA +    ++  G  PN  TY S+  G+  
Sbjct: 428 DEM-RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 486

Query: 441 ARKPGEAL-LLWKEIKERCE-------VKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           +R+   A+  L   I +RC+       +  EG+  +          +E LD L ++C R 
Sbjct: 487 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG-------LAKEALDLLNELCSRG 539

Query: 493 AFFRKALEIVA 503
              + + E VA
Sbjct: 540 LVKKSSAEQVA 550



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 183/422 (43%), Gaps = 33/422 (7%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R    P V  ++T++  L  SG              +K+  +  D  +  +  PD   Y 
Sbjct: 152 RMNVAPDVVTYNTILRTLCDSGK-------------LKQAMEVLDRQLQKECYPDVITYT 198

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            ++ A        + ++L D+M   G+KPDV+TYNV+I    +  R    +  L  +   
Sbjct: 199 ILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSY 258

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G    + T   ++ +    G    AE ++  M   R+     +   ++       +G   
Sbjct: 259 GCQPNVITHNIILRSMCSTGRWMDAEKLLSDML--RKGCSPSVVTFNILINFLCRQG--- 313

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                   LL  +I+   + P+   T  PNS  Y  L+ G+  E ++   +  L  M  +
Sbjct: 314 --------LLGRAIDILEKMPMHGCT--PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 363

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                +PD VTY T+++AL K G +D A ++L +++  G     ITYN ++ G  +  + 
Sbjct: 364 ---GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 420

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A +LL EM     ++PD+++Y+ L+ G         A+ FF+++   GI P  I+Y +
Sbjct: 421 ERAIKLLDEMRRKG-LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 479

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           +M     S Q   A      M+   R K     + +L+EG    GL +EA  ++  +   
Sbjct: 480 IMLGLCKSRQTDRAIDFLAYMI-SKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSR 538

Query: 423 GF 424
           G 
Sbjct: 539 GL 540



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 20/207 (9%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD++    LI GF  I  +  A      +   G  P  I+Y  L+  +  S +   A +V
Sbjct: 90  PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 149

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            D M   P    D+V +N ++   C  G +++A  +++R  +   YP+V TY  L     
Sbjct: 150 LDRMNVAP----DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATC 205

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
                G+A+ L  E++ +                  KPD    + L +   +     +A+
Sbjct: 206 KESGVGQAMKLLDEMRNKGS----------------KPDVVTYNVLINGICKEGRLDEAI 249

Query: 500 EIVACMEEHGIPPNKTKYKKIYVEMHS 526
           + +  M  +G  PN   +  I   M S
Sbjct: 250 KFLNNMPSYGCQPNVITHNIILRSMCS 276



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +  ++T+++ L   G           DV V+ + + S         P    
Sbjct: 360 MVSRGCYPDIVTYNTLLTALCKDGK---------VDVAVEILNQLSS----KGCSPVLIT 406

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           YN V++  + +GK ++ ++L D+M   G KPD++TY+ ++   +R  +
Sbjct: 407 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 454


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 218/491 (44%), Gaps = 49/491 (9%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           KF +  +     PD     +++     +GK KK   + + + + GA PDV+TYNV+I   
Sbjct: 135 KFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGY 194

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV--QAMREGRRDV 161
            ++      + VL+R   M +   + T+ +++      G L+ A  ++  Q  +E   DV
Sbjct: 195 CKSGEIDNALQVLDR---MNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDV 251

Query: 162 ----------CK---IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
                     CK   + + + L D   E        D V   +L N I          K 
Sbjct: 252 ITYTILIEATCKESGVGQAMKLLD---EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 308

Query: 209 F--------APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
                     PN   +  +++   + GR  D  ++L  M R+      P  VT+  +++ 
Sbjct: 309 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK---GCSPSVVTFNILINF 365

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L + G + RA  +L +M   G   N ++YN LL G+C++ ++D+A E L  M       P
Sbjct: 366 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG-CYP 424

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D+V+YN L+           A+   N++ ++G +P  I+Y T++   +   + + A K+ 
Sbjct: 425 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLL 484

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           DEM R   +K DI+ ++ LV G  R G V+EA +    ++  G  PN  TY S+  G+  
Sbjct: 485 DEM-RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 543

Query: 441 ARKPGEAL-LLWKEIKERCE-------VKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           +R+   A+  L   I +RC+       +  EG+  +          +E LD L ++C R 
Sbjct: 544 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG-------LAKEALDLLNELCSRG 596

Query: 493 AFFRKALEIVA 503
              + + E VA
Sbjct: 597 LVKKSSAEQVA 607



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 183/422 (43%), Gaps = 33/422 (7%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R    P V  ++T++  L  SG              +K+  +  D  +  +  PD   Y 
Sbjct: 209 RMNVAPDVVTYNTILRTLCDSGK-------------LKQAMEVLDRQLQKECYPDVITYT 255

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            ++ A        + ++L D+M   G+KPDV+TYNV+I    +  R    +  L  +   
Sbjct: 256 ILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSY 315

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G    + T   ++ +    G    AE ++  M   R+     +   ++       +G   
Sbjct: 316 GCQPNVITHNIILRSMCSTGRWMDAEKLLSDML--RKGCSPSVVTFNILINFLCRQG--- 370

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                   LL  +I+   + P+   T  PNS  Y  L+ G+  E ++   +  L  M  +
Sbjct: 371 --------LLGRAIDILEKMPMHGCT--PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 420

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                +PD VTY T+++AL K G +D A ++L +++  G     ITYN ++ G  +  + 
Sbjct: 421 ---GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 477

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A +LL EM     ++PD+++Y+ L+ G         A+ FF+++   GI P  I+Y +
Sbjct: 478 ERAIKLLDEMRRKG-LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 536

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           +M     S Q   A      M+   R K     + +L+EG    GL +EA  ++  +   
Sbjct: 537 IMLGLCKSRQTDRAIDFLAYMI-SKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSR 595

Query: 423 GF 424
           G 
Sbjct: 596 GL 597



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 20/207 (9%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD++    LI GF  I  +  A      +   G  P  I+Y  L+  +  S +   A +V
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 206

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            D M   P    D+V +N ++   C  G +++A  +++R  +   YP+V TY  L     
Sbjct: 207 LDRMNVAP----DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATC 262

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
                G+A+ L  E++ +                  KPD    + L +   +     +A+
Sbjct: 263 KESGVGQAMKLLDEMRNKGS----------------KPDVVTYNVLINGICKEGRLDEAI 306

Query: 500 EIVACMEEHGIPPNKTKYKKIYVEMHS 526
           + +  M  +G  PN   +  I   M S
Sbjct: 307 KFLNNMPSYGCQPNVITHNIILRSMCS 333



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 13/135 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +  ++T+++ L     DG V      DV V+ + + S         P    
Sbjct: 417 MVSRGCYPDIVTYNTLLTALCK---DGKV------DVAVEILNQLSS----KGCSPVLIT 463

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V++  + +GK ++ ++L D+M   G KPD++TY+ ++   +R  +    +     + 
Sbjct: 464 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLE 523

Query: 121 EMGITLCMTTFQSLV 135
            +GI     T+ S++
Sbjct: 524 GLGIRPNAITYNSIM 538


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 206/480 (42%), Gaps = 84/480 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P    + T V  +   GD   V ++ L       +RK  +   +S  KP+   
Sbjct: 208 MVENGLQPDQITYGTFVDGMCKMGD--TVSALNL-------LRKMEE---ISHIKPNVVI 255

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A+++     G+      LF +M + G  P+++TYN MI     + R      +L+ +L
Sbjct: 256 YSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEML 315

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I+  + T+ +L+ A+V                                      EG 
Sbjct: 316 ERKISPNVVTYNALINAFV-------------------------------------KEGK 338

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  E+++++LP  I              PN+  Y +++ G+  + R+     M   M 
Sbjct: 339 FFEAAELYDEMLPRGI-------------IPNTITYNSMIDGFCKQDRLDAAEDMFYLMA 385

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD  T+TT++     A  +D   ++L EM R G+ AN +TYN L+ G+C   
Sbjct: 386 TK---GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVG 442

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA---------- 350
            ++ A +L ++M     + PD+V+ N L+DG         AL  F  M+           
Sbjct: 443 DLNAALDLSQQMISSG-VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 351 -RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G+ P  ++Y  L+       +   A ++++EM     V  D + ++ +++G C+   +
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVP-DTITYSSMIDGLCKQSRL 560

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +EA ++   M    F PNV T+ +L NG   A +  + L L+      CE+ + G+ AD+
Sbjct: 561 DEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF------CEMGRRGIVADA 614



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 188/416 (45%), Gaps = 40/416 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +  +L+      +  + L LF Q+     +PDVLT+  ++    R  R    V +
Sbjct: 149 PDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVAL 204

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ + V      GD   A  +++ M E       ++    + D   
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLC 264

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + +G   D   +F ++    I              PN   Y  ++ G+   GR S   R+
Sbjct: 265 K-DGRHSDSHNLFIEMQDKGI-------------FPNIVTYNCMIGGFCISGRWSAAQRL 310

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ +   P+ VTY  +++A VK G    A ++  EM   G+  N ITYN ++ G
Sbjct: 311 LQEMLERKIS---PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 367

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +C+Q ++D A+++   MA      PDV ++  LIDG+     IDD    +   +EM  RG
Sbjct: 368 FCKQDRLDAAEDMFYLMATKG-CSPDVFTFTTLIDGYCGAKRIDD---GMELLHEMPRRG 423

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +    ++Y TL+  F L      A  +  +M+    V  DIV  N L++G C  G +++A
Sbjct: 424 LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-VCPDIVTCNTLLDGLCDNGKLKDA 482

Query: 413 KRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + + M++           NG  P+V TY  L  G+    K  EA  L++E+  R
Sbjct: 483 LEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 186/429 (43%), Gaps = 41/429 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P++  ++ ++     SG     +  +L   +++R  K S         P+   
Sbjct: 279 MQDKGIFPNIVTYNCMIGGFCISGRWSAAQ--RLLQEMLER--KIS---------PNVVT 325

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++NA    GK  +  +L+D+M   G  P+ +TYN MI    +  R      +   + 
Sbjct: 326 YNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMA 385

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF +L+  Y G   ++    ++  M   RR +       +   +     GD
Sbjct: 386 TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP--RRGLVANTVTYNTLIHGFCLVGD 443

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +   ++ ++++ + +              P+     TL+ G  + G++ D + M  AM+
Sbjct: 444 LNAALDLSQQMISSGV-------------CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 241 RQ--EDNASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +   + +ASHP      D +TY  ++  L+  G    A ++  EM   G+  + ITY+ +
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C+Q ++D+A ++   M   +   P+VV++N LI+G+         L  F EM  RG
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKS-FSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I    I Y TL+  F        A  +F EM+        I   NML   + +    EE 
Sbjct: 610 IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSK----EEL 665

Query: 413 KRIIERMKE 421
           +R +  +++
Sbjct: 666 ERAVAMLED 674



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 121/281 (43%), Gaps = 21/281 (7%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++ E      D  ++T ++        +  A     ++T++G+  + +T+  LL G C  
Sbjct: 105 QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLD 164

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A +L  ++       PDV+++  L++G         A+   + M   G+ P +I+
Sbjct: 165 HRVSEALDLFHQIC-----RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQIT 219

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T +           A  +  +M     +K ++V ++ +++G C+ G   ++  +   M
Sbjct: 220 YGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEM 279

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           ++ G +PN+ TY  +  G  ++ +   A  L +E+ ER                 + P+ 
Sbjct: 280 QDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLER----------------KISPNV 323

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +AL +  V+   F +A E+   M   GI PN   Y  +
Sbjct: 324 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSM 364



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 45/229 (19%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P V+ +N L+   + ++     ++ + +M  + I     S+T L+K F   S+   A   
Sbjct: 79  PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138

Query: 380 FDEMLR-------------------DPRV-----------KVDIVAWNMLVEGYCRMGLV 409
           F ++ +                   D RV           + D++ +  L+ G CR G V
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRV 198

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            EA  +++RM ENG  P+  TYG+  +G+        AL L ++++E   +         
Sbjct: 199 VEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHI--------- 249

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                 KP+  +  A+ D   +      +  +   M++ GI PN   Y 
Sbjct: 250 ------KPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYN 292


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 205/418 (49%), Gaps = 44/418 (10%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKH 110
           S ++PD  AYNAV++    + + +   Q+ ++M   G  PD++TYN+MI  LC R  +  
Sbjct: 141 SHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR-RKLG 199

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-- 168
           L + VL+++L       + T+  L+ A +  G +  A  +++ M         + R L  
Sbjct: 200 LALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEM---------LARGLLP 250

Query: 169 DLEDYSSENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           D+  Y++   G   +   E   +L+ +  +   EP ++          Y  L++ ++N+G
Sbjct: 251 DMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVIS---------YNILLRAFLNQG 301

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           +  +  +++  M  +      P+ VTY+ ++S+L + G +D A  VL  M    +  +  
Sbjct: 302 KWDEGEKLVAEMFSR---GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTY 358

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           +Y+ L+   C++ ++D A  ++  M  +  + PD+V+YN ++       ++  AL  FN+
Sbjct: 359 SYDPLISALCKEGRLDLAIGIMDYMISNGCL-PDIVNYNTILAALCKNGNANQALEIFNK 417

Query: 348 MRARGIAPTKISYTTLMKAF--------ALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
           +R  G  P   SY T++ A         AL   P + +K  D          D + +N L
Sbjct: 418 LRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDP---------DEITYNSL 468

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +   CR GLVEEA  +++ M+++GF P V +Y  +  G+   R+  +A+ ++ E+ E+
Sbjct: 469 ISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEK 526



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 145/322 (45%), Gaps = 23/322 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL     P    YT L++  + EG +++ +++L  M  +      PD  TY  ++  + K
Sbjct: 208 LLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR---GLLPDMYTYNAIIRGMCK 264

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G ++RA +++  +T  G   + I+YNILL+ +  Q + D+ ++L+ EM      EP+ V
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG-CEPNKV 323

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y+ILI           A++    M  + + P   SY  L+ A     +  LA  + D M
Sbjct: 324 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 383

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + +  +  DIV +N ++   C+ G   +A  I  +++  G  PNV++Y ++ +       
Sbjct: 384 ISNGCLP-DIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISA------ 436

Query: 444 PGEALLLWKEIKERCEVKKEGVN-ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
                 LW      C  +   +    + +   + PDE   ++L     R     +A+ ++
Sbjct: 437 ------LWS-----CGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLL 485

Query: 503 ACMEEHGIPPNKTKYKKIYVEM 524
             ME+ G  P    Y  + + +
Sbjct: 486 DDMEQSGFRPTVISYNIVLLGL 507



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 190/457 (41%), Gaps = 65/457 (14%)

Query: 9   HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFS------DPDIVSDSKPDTAAYN 62
            ++A + V++R+ A G    + +  +    +   RK        D  ++ +  P    Y 
Sbjct: 162 QIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYT 221

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILE 121
            ++ A    G   + ++L ++M   G  PD+ TYN +I+ +C           ++ER  E
Sbjct: 222 ILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG--------MVERAAE 273

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQA-MREGRRDVCKIIRELDLEDYSSENEGD 180
           +  +L     +  V +Y           +++A + +G+ D                 EG 
Sbjct: 274 LITSLTSKGCEPDVISY---------NILLRAFLNQGKWD-----------------EG- 306

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                   EKL+    +   E         PN   Y+ L+      GR+ + + +L  M 
Sbjct: 307 --------EKLVAEMFSRGCE---------PNKVTYSILISSLCRFGRIDEAISVLKVMI 349

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +E     PD  +Y  ++SAL K G +D A  ++  M   G   + + YN +L   C+  
Sbjct: 350 EKELT---PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNG 406

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
             ++A E+  ++       P+V SYN +I       D + AL     M ++GI P +I+Y
Sbjct: 407 NANQALEIFNKLR-GMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITY 465

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +L+         + A  + D+M      +  ++++N+++ G C++  +++A  +   M 
Sbjct: 466 NSLISCLCRDGLVEEAIGLLDDM-EQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMI 524

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           E G  PN  TY  L  GI  A    EA+ L   +  R
Sbjct: 525 EKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSR 561



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 138/317 (43%), Gaps = 22/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ K + P+  + T L+KG+ N   +    R++  +    ++ + PD   Y  V+S   K
Sbjct: 104 LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL----ESHTEPDVFAYNAVISGFCK 159

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A QVL  M   G   + +TYNI++   C + ++  A  +L ++  D    P V+
Sbjct: 160 VNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLD-NCMPTVI 218

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y ILI+  I+      A+    EM ARG+ P   +Y  +++        + A ++    
Sbjct: 219 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITS- 277

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           L     + D++++N+L+  +   G  +E ++++  M   G  PN  TY  L + +    +
Sbjct: 278 LTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGR 337

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA+ + K + E+                 L PD    D L     +      A+ I+ 
Sbjct: 338 IDEAISVLKVMIEK----------------ELTPDTYSYDPLISALCKEGRLDLAIGIMD 381

Query: 504 CMEEHGIPPNKTKYKKI 520
            M  +G  P+   Y  I
Sbjct: 382 YMISNGCLPDIVNYNTI 398



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 49/377 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G LP +  ++ ++  +     +G VE  +  +++     K  +PD++S        
Sbjct: 243 MLARGLLPDMYTYNAIIRGMC---KEGMVE--RAAELITSLTSKGCEPDVIS-------- 289

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L A  N GK  +  +L  +M   G +P+ +TY+++I    R  R    + VL+ ++
Sbjct: 290 YNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMI 349

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN--- 177
           E  +T    ++  L++A    G L++A  I+  M          I    L D  + N   
Sbjct: 350 EKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM----------ISNGCLPDIVNYNTIL 399

Query: 178 -----EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                 G+ +   E+F KL                   PN   Y T++    + G   D 
Sbjct: 400 AALCKNGNANQALEIFNKLRGMGC-------------PPNVSSYNTMISALWSCG---DR 443

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            R LG +         PD +TY +++S L + G ++ A  +L +M + G     I+YNI+
Sbjct: 444 SRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIV 503

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L G C+  +ID A  +  EM +     P+  +Y +LI+G         A+   N + +R 
Sbjct: 504 LLGLCKVRRIDDAIGMFAEMIEKG-CRPNETTYILLIEGIGFAGWRTEAMELANSLFSRD 562

Query: 353 IAPTKISYTTLMKAFAL 369
           +  ++ S+  L K F +
Sbjct: 563 VI-SQDSFKRLNKTFPM 578



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 3/177 (1%)

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
            KAG  + +   L  +   G   + I    L+KG+     I+KA  ++  +  ++  EPD
Sbjct: 89  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL--ESHTEPD 146

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           V +YN +I GF  ++    A    N M+ARG  P  ++Y  ++ +     +  LA  V D
Sbjct: 147 VFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLD 206

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           ++L D      ++ + +L+E     G + EA +++E M   G  P++ TY ++  G+
Sbjct: 207 QLLLD-NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 262



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 21/197 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           +L F   +  +G  P  I  T L+K F      + A++V +  + +   + D+ A+N ++
Sbjct: 97  SLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME--ILESHTEPDVFAYNAVI 154

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE-IKERC- 458
            G+C++  +E A +++ RMK  GF P++ TY  +   +   RK G AL +  + + + C 
Sbjct: 155 SGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCM 214

Query: 459 ------------EVKKEGVNA-----DSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
                        + + G+N      +  L   L PD    +A+     +     +A E+
Sbjct: 215 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAEL 274

Query: 502 VACMEEHGIPPNKTKYK 518
           +  +   G  P+   Y 
Sbjct: 275 ITSLTSKGCEPDVISYN 291


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP+   +N ++N    LG       +  ++ + G +PD +T N  IK  C +      L 
Sbjct: 102 KPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALN 161

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  ++++ +G  L   ++ +L+      G  ++ ET  +A  E  R V   + +LD+  Y
Sbjct: 162 F-HDKLVALGFHLDQVSYGTLIN-----GLCKVGET--RAALELLRRVDGKLVQLDVVMY 213

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S+        D    +K + ++ +  SE  ++ +  + N   Y+ L+ G+   G++ D +
Sbjct: 214 STI------IDSMCKDKNVNDAFDLYSE--MVSRRISSNIVTYSALISGFCIVGKLKDAI 265

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +  N   PD  T+  +V A  K G +  A+  LA M + G+  + +TYN L+
Sbjct: 266 GLFNKMTSENIN---PDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLM 322

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GYC   +++ AK +L  M+    +   V SYNI+I+GF  I     A+  F EM  + I
Sbjct: 323 DGYCLVNEVNMAKSILNTMSHRG-VTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQI 381

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  I+Y +L+     S +   A ++ D ++ D   + DI+ ++ +++  C+  LV++A 
Sbjct: 382 FPNVITYNSLIDGLCKSGRISYALELID-LMHDRGQQPDIITYSSILDALCKNHLVDKAI 440

Query: 414 RIIERMKENGFYPNVATYGSLANGI 438
            ++ ++K+ G  PN+ TY  L +G+
Sbjct: 441 ALLIKLKDQGIRPNMYTYTILIDGL 465



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/512 (21%), Positives = 210/512 (41%), Gaps = 87/512 (16%)

Query: 6   YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVL 65
           Y  H  + ST         ++  V++V LF+ ++++           +  P    +  +L
Sbjct: 34  YFIHSFSTSTTFHN-----NNDVVDAVSLFNCLLRQ-----------NPTPPDMEFGQIL 77

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT 125
            +          L LF +M   G KP+ + +N++I    +         VL +IL+MG  
Sbjct: 78  GSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYE 137

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
               T  + +  +   G                    +I + L+  D             
Sbjct: 138 PDTITLNTFIKGFCLKG--------------------QIHQALNFHD------------- 164

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                             L+   F  +   Y TL+ G     +V +T   L  +RR +  
Sbjct: 165 -----------------KLVALGFHLDQVSYGTLINGLC---KVGETRAALELLRRVDGK 204

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
               D V Y+T++ ++ K  +++ A  + +EM    + +N +TY+ L+ G+C   ++  A
Sbjct: 205 LVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDA 264

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             L  +M  +  I PDV ++NIL+D F        A      M  +GI P  ++Y +LM 
Sbjct: 265 IGLFNKMTSE-NINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMD 323

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            + L ++  +A  + + M     V   + ++N+++ G+C++ +V++A ++ + M     +
Sbjct: 324 GYCLVNEVNMAKSILNTM-SHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIF 382

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           PNV TY SL +G+  + +   AL L   + +R +             P +     +LDAL
Sbjct: 383 PNVITYNSLIDGLCKSGRISYALELIDLMHDRGQ------------QPDIITYSSILDAL 430

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                +     KA+ ++  +++ GI PN   Y
Sbjct: 431 C----KNHLVDKAIALLIKLKDQGIRPNMYTY 458



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L   + P++    T +KG+  +G++   +     +        H D V+Y T+++ L K
Sbjct: 131 ILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVAL---GFHLDQVSYGTLINGLCK 187

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G    A ++L  +    V  + + Y+ ++   C+   ++ A +L  EM    +I  ++V
Sbjct: 188 VGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVS-RRISSNIV 246

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y+ LI GF ++     A+  FN+M +  I P   ++  L+ AF    + K A      M
Sbjct: 247 TYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMM 306

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++   +K DIV +N L++GYC +  V  AK I+  M   G    V +Y  + NG    + 
Sbjct: 307 MKQG-IKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKM 365

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A+ L+KE+  +             + P +     L+D L     ++     ALE++ 
Sbjct: 366 VDQAMKLFKEMHHK------------QIFPNVITYNSLIDGLC----KSGRISYALELID 409

Query: 504 CMEEHGIPPNKTKYKKI 520
            M + G  P+   Y  I
Sbjct: 410 LMHDRGQQPDIITYSSI 426



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/451 (20%), Positives = 183/451 (40%), Gaps = 92/451 (20%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   Y+A+++    +GK K  + LF++M      PDV T+N+++    +  R       L
Sbjct: 244 NIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGL 303

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +++ GI   + T+ SL+  Y    ++ +A++I+  M    R V   +R  ++      
Sbjct: 304 AMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTM--SHRGVTATVRSYNIVINGFC 361

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                D   ++F+++               K   PN   Y +L+ G    GR+S  + ++
Sbjct: 362 KIKMVDQAMKLFKEMHH-------------KQIFPNVITYNSLIDGLCKSGRISYALELI 408

Query: 237 GAMR--------------------------------RQEDNASHPDHVTYTTVVSALVKA 264
             M                                 + +D    P+  TYT ++  L K 
Sbjct: 409 DLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKG 468

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G ++ AR +  ++   G      TY ++++G+C     D+A  LL +M D++ I PD ++
Sbjct: 469 GRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCI-PDAIT 527

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF--------------ALS 370
           Y I+I      D++  A     EM  RG+  + + Y +   +F                S
Sbjct: 528 YEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTS 587

Query: 371 SQPK------LANKVFDEM------LRDPRVK------------------VDIVAWNMLV 400
           SQ        L  +++ +       +RD  V+                  +D+  + +++
Sbjct: 588 SQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMI 647

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +G+C  GL +E+  ++ +M+ NG  P+  TY
Sbjct: 648 QGFCSHGLFDESLALLSKMEVNGCIPDAVTY 678



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 143/338 (42%), Gaps = 31/338 (9%)

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            VF   +P   +P   P      F  +    TT    + N   V D V +   + RQ  N
Sbjct: 12  SVFRVSVPKKFHPFQFPENTHFYFIHSFSTSTT----FHNNNDVVDAVSLFNCLLRQ--N 65

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
            + PD + +  ++ +LVK+        +  +M   G+  N + +NIL+  +CQ   I  A
Sbjct: 66  PTPPD-MEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFA 124

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             +L ++      EPD ++ N  I GF L      AL F +++ A G    ++SY TL+ 
Sbjct: 125 FSVLAKIL-KMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLIN 183

Query: 366 AFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
                 + + A     E+LR      V++D+V ++ +++  C+   V +A  +   M   
Sbjct: 184 GLCKVGETRAA----LELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSR 239

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
               N+ TY +L +G  +  K  +A+ L+ ++        E +N          PD    
Sbjct: 240 RISSNIVTYSALISGFCIVGKLKDAIGLFNKMTS------ENIN----------PDVYTF 283

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + L D   +    ++A   +A M + GI P+   Y  +
Sbjct: 284 NILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSL 321



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 133/338 (39%), Gaps = 58/338 (17%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
            P+V  +++++  L  SG      +++L D++  R             +PD   Y+++L+
Sbjct: 382 FPNVITYNSLIDGLCKSGRIS--YALELIDLMHDR-----------GQQPDIITYSSILD 428

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
           A        K + L  ++ + G +P++ TY ++I    +  R      + E +L  G  L
Sbjct: 429 ALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNL 488

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+  ++  +   G  + A +++  M++       I  E+ +          D D+++
Sbjct: 489 TVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLF------DKDEND 542

Query: 187 VFEKLLPNSINPSSEPPLL------------PKTFAPNSRIYTTLMKGYMNEGRV----- 229
             EKLL   I        L            P  F  N  +  T  +   N  ++     
Sbjct: 543 KAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERI 602

Query: 230 -SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
             D V     MR ++     P  + Y+T           D ++Q        G   +  T
Sbjct: 603 YCDCVLTKSNMRDKD--VECPSVIIYSTC----------DWSKQ--------GYILDVNT 642

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           Y ++++G+C     D++  LL +M  +  I PD V+Y+
Sbjct: 643 YTVMIQGFCSHGLFDESLALLSKMEVNGCI-PDAVTYD 679


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 201/470 (42%), Gaps = 46/470 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L++  N       + LF Q    G  PD+ T +++I      +   L   V
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREGRRDVCKIIRELDL 170
              IL+ G      T  +L+      G+++ A     + + Q  +  +     +I  L  
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLC- 173

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   G+      +  KL  +S+              P+  +Y T++        + 
Sbjct: 174 ------KTGETKAVARLLRKLEGHSVK-------------PDVVMYNTIINSLCKNKLLG 214

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D   +   M  +      PD VTYTT++      G +  A  +L EM    +  N  T+N
Sbjct: 215 DACDVYSEMIVK---GISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFN 271

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           IL+    ++ ++ +AK LL  M   A I+PDV +YN LIDG+ L+D+   A   F  M  
Sbjct: 272 ILIDALSKEGKMKEAKILLAVMM-KACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQ 330

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RG+ P    YT ++     +     A  +F+EM +   +  DIV +N L++G C+   +E
Sbjct: 331 RGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEM-KHKNMIPDIVTYNSLIDGLCKNHHLE 389

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            A  + +RMKE G  P+V +Y  L +G+  + +  +A    KEI +R   K   +N  + 
Sbjct: 390 RAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDA----KEIFQRLLAKGYHLNVHA- 444

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                         L +   +A FF +AL++ + ME+ G  P+   +  I
Sbjct: 445 -----------YTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDII 483



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/431 (20%), Positives = 168/431 (38%), Gaps = 68/431 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P+    +T++  L   G+             +K+   F D  +    + D  +
Sbjct: 118 ILKRGFHPNAITLNTLIKGLCFRGE-------------IKKALYFHDQLVAQGFQLDQVS 164

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N     G+ K   +L  ++     KPDV+ YN +I    +         V   ++
Sbjct: 165 YGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMI 224

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ +L+  +   G L+ A +++  M+                         
Sbjct: 225 VKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKL------------------------ 260

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K   PN   +  L+     EG++ +   +L  M 
Sbjct: 261 --------------------------KNINPNVCTFNILIDALSKEGKMKEAKILLAVMM 294

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +       PD  TY +++        +  A+ V   M + GV  +   Y  ++ G C+  
Sbjct: 295 KA---CIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTK 351

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +D+A  L  EM     I PD+V+YN LIDG         A+     M+ +GI P   SY
Sbjct: 352 MVDEAMSLFEEMKHKNMI-PDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSY 410

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T L+     S + + A ++F  +L      +++ A+ +L+   C+ G  +EA  +  +M+
Sbjct: 411 TILLDGLCKSGRLEDAKEIFQRLLAK-GYHLNVHAYTVLINRLCKAGFFDEALDLKSKME 469

Query: 421 ENGFYPNVATY 431
           + G  P+  T+
Sbjct: 470 DKGCMPDAVTF 480



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 135/309 (43%), Gaps = 29/309 (9%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           IV    PD   Y  +++    +G  K+   L ++M      P+V T+N++I   ++  + 
Sbjct: 224 IVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKM 283

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +L  +++  I   + T+ SL+  Y    +++ A+ +  +M   +R V       D
Sbjct: 284 KEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSM--AQRGVTP-----D 336

Query: 170 LEDYSSENEGDD-----DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           ++ Y++   G       D+   +FE++               K   P+   Y +L+ G  
Sbjct: 337 VQCYTNMINGLCKTKMVDEAMSLFEEMKH-------------KNMIPDIVTYNSLIDGLC 383

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
               +    R +   +R ++    PD  +YT ++  L K+G ++ A+++   +   G   
Sbjct: 384 KNHHLE---RAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHL 440

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N   Y +L+   C+    D+A +L  +M D   + PD V+++I+I      D++  A   
Sbjct: 441 NVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCM-PDAVTFDIIIRALFEKDENDKAEKI 499

Query: 345 FNEMRARGI 353
             EM ARG+
Sbjct: 500 LREMIARGL 508


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 131/530 (24%), Positives = 222/530 (41%), Gaps = 93/530 (17%)

Query: 16  VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANL---G 72
           V++  A SG  G  +++KLFD ++   R  S             A+N +LN  A      
Sbjct: 18  VIADRARSGSLGIDDALKLFDELLPHARPAS-----------VRAFNHLLNVVARARCSS 66

Query: 73  KPKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT 129
             +  + LF++M    +   +PD+ TY+++     R  R          IL+ G      
Sbjct: 67  TSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTG------ 120

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFE 189
                           + E ++  +  G  D  ++                 D+  ++  
Sbjct: 121 --------------WRVNEVVINQLLNGLCDAKRV-----------------DEAMDILL 149

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           + +P       E   +P   + N     TL+KG  NE RV + + +L  M         P
Sbjct: 150 RRMP-------EFGCMPNVVSCN-----TLLKGLCNEKRVEEALELLHTMAEDGGGNCTP 197

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           + VTY T++  L KA ++DRA  VL  M   GV  + +TY+ ++ G C+   +D+A+ +L
Sbjct: 198 NVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVL 257

Query: 310 REMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           + M D   ++PDVV+YN +IDG      +D + G L     M  +G+ P  ++Y T++  
Sbjct: 258 QHMIDKG-VKPDVVTYNTIIDGLCKAQAVDRAEGVL---QHMIDKGVKPDVVTYNTIIDG 313

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
              +     A+ V   M+ D  VK DI  +N L+ GY   G  +E  R +E M   G  P
Sbjct: 314 LCKAQAVDRADGVLQHMI-DKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDP 372

Query: 427 NVATYGSLANGISLARKPGEA-----LLLWKEIKERCEV--------KKEGVNAD-SDL- 471
           +V TY  L + +    K  EA      ++ K IK    +           G  AD +DL 
Sbjct: 373 DVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLL 432

Query: 472 ----PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                  + P+  + + +     + A   +A+ I + M +HG+ P+   Y
Sbjct: 433 DLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTY 482



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 182/400 (45%), Gaps = 20/400 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   YN +++         +   +   M + G KPDV+TYN +I    +A        
Sbjct: 266 KPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADG 325

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL+ +++  +   + T+  L+  Y+  G+ +     ++ M     D   +   L L DY 
Sbjct: 326 VLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSL-LLDYL 384

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N G   +  ++F               ++ K   PN  IY  L+ GY   G ++D   
Sbjct: 385 CKN-GKCTEARKIFY-------------CMIRKGIKPNVTIYGILLHGYAARGAIADLTD 430

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M     N   P++  +  V+ A  K   +D A  + + M++ G+  + +TY IL+ 
Sbjct: 431 LLDLMVA---NGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILID 487

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C+  ++D A     +M +D  + P+ V +N L+ G   +D    A   F EM  +G+ 
Sbjct: 488 ALCKLGRVDDAVLKFNQMINDG-VTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVR 546

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  + + T+M       Q  +A ++ D M R   V+ +++++N L+ G+C  G  +EA +
Sbjct: 547 PNVVFFNTIMCNLCNEGQVMVAQRLIDSMER-VGVRPNVISYNTLIGGHCLAGRTDEAAQ 605

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++ M   G  P++ +Y +L  G     +   A  L++E+
Sbjct: 606 LLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREM 645



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/476 (20%), Positives = 212/476 (44%), Gaps = 42/476 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++T++  L  +      ++V   D V++ +       I  D KPD   
Sbjct: 295 MIDKGVKPDVVTYNTIIDGLCKA------QAVDRADGVLQHM-------IDKDVKPDIQT 341

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++   + G+ K+ ++  ++M+  G  PDV+TY++++    +  +      +   ++
Sbjct: 342 YNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMI 401

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   +T +  L+  Y   G +     ++  M          I  + L  Y+ +    
Sbjct: 402 RKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKK--AM 459

Query: 181 DDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTT 218
            D+   +F ++  + ++P                           ++     PNS ++ +
Sbjct: 460 IDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNS 519

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G     R      +   M    D    P+ V + T++  L   G +  A++++  M 
Sbjct: 520 LVYGLCTVDRWEKAEELFFEMW---DQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSME 576

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R+GV  N I+YN L+ G+C   + D+A +LL  M     ++PD++SY+ L+ G+      
Sbjct: 577 RVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVS-VGLKPDLISYDTLLRGYCKTGRI 635

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A   F EM  +G+ P  ++Y+T+++    + +   A +++  M++  + + DI  +N+
Sbjct: 636 DNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQ-QWDIYTYNI 694

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++ G C+   V+EA +I + +      PN+ T+  + + +    +  +A+ L+  I
Sbjct: 695 ILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASI 750



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 123/519 (23%), Positives = 210/519 (40%), Gaps = 80/519 (15%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
            +  P+   YN +++         +   +   M + G K DV+TY+ +I    +A     
Sbjct: 193 GNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDR 252

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              VL+ +++ G+   + T+ +++        ++ AE ++Q M +      K ++  D+ 
Sbjct: 253 AEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMID------KGVKP-DVV 305

Query: 172 DYSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
            Y++  +G       D  D V +              ++ K   P+ + Y  L+ GY++ 
Sbjct: 306 TYNTIIDGLCKAQAVDRADGVLQH-------------MIDKDVKPDIQTYNCLIHGYLST 352

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G   + VR L  M  +      PD VTY+ ++  L K G    AR++   M R G+  N 
Sbjct: 353 GEWKEVVRRLEEMYAR---GLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNV 409

Query: 287 ITYNILLKGYCQQLQIDKAKELL------------------------REMADDA------ 316
             Y ILL GY  +  I    +LL                        + M D+A      
Sbjct: 410 TIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSR 469

Query: 317 ----KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                + PDVV+Y ILID    +     A+  FN+M   G+ P  + + +L+       +
Sbjct: 470 MSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDR 529

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            + A ++F EM  D  V+ ++V +N ++   C  G V  A+R+I+ M+  G  PNV +Y 
Sbjct: 530 WEKAEELFFEMW-DQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYN 588

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           +L  G  LA +  EA  L                 D  +   LKPD    D L     + 
Sbjct: 589 TLIGGHCLAGRTDEAAQLL----------------DVMVSVGLKPDLISYDTLLRGYCKT 632

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKIYVEM-HSRMFT 530
                A  +   M   G+ P    Y  I   + H+R F+
Sbjct: 633 GRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFS 671



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 191/483 (39%), Gaps = 109/483 (22%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC---MTTFQSLVA 136
           L  +M EFG  P+V++ N ++K      R    + +L  + E G   C   + T+ +++ 
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIID 207

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
                  ++ AE ++Q M                                          
Sbjct: 208 GLCKAQAVDRAEGVLQHM------------------------------------------ 225

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                   + K    +   Y+T++ G      V    R  G ++   D    PD VTY T
Sbjct: 226 --------IDKGVKLDVVTYSTIIDGLCKAQAVD---RAEGVLQHMIDKGVKPDVVTYNT 274

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  L KA ++DRA  VL  M   GV  + +TYN ++ G C+   +D+A  +L+ M  D 
Sbjct: 275 IIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI-DK 333

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            ++PD+ +YN LI G++   +    +    EM ARG+ P  ++Y+ L+     + +   A
Sbjct: 334 DVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEA 393

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG----------------------------- 407
            K+F  M+R   +K ++  + +L+ GY   G                             
Sbjct: 394 RKIFYCMIRKG-IKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLC 452

Query: 408 ------LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
                 +++EA  I  RM ++G  P+V TYG L + +    +  +A+L + ++       
Sbjct: 453 AYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQM------I 506

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
            +GV           P+  + ++L         + KA E+   M + G+ PN   +  I 
Sbjct: 507 NDGVT----------PNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIM 556

Query: 522 VEM 524
             +
Sbjct: 557 CNL 559



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 175/438 (39%), Gaps = 68/438 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G  P+V  +  ++   AA G     +   L D++V            +   P+   
Sbjct: 400 MIRKGIKPNVTIYGILLHGYAARG--AIADLTDLLDLMV-----------ANGISPNNYI 446

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N VL A A      + + +F +M + G  PDV+TY ++I    +  R    V    +++
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+T     F SLV         E AE                                
Sbjct: 507 NDGVTPNSVVFNSLVYGLCTVDRWEKAE-------------------------------- 534

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E+F ++    + P             N   + T+M    NEG+V    R++ +M 
Sbjct: 535 -----ELFFEMWDQGVRP-------------NVVFFNTIMCNLCNEGQVMVAQRLIDSME 576

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R       P+ ++Y T++     AG  D A Q+L  M  +G+  + I+Y+ LL+GYC+  
Sbjct: 577 RV---GVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTG 633

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID A  L REM     + P  V+Y+ ++ G       + A   +  M   G      +Y
Sbjct: 634 RIDNAYCLFREMLRKG-VTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTY 692

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++     ++    A K+F + L    ++ +I+ + ++++   + G  ++A  +   + 
Sbjct: 693 NIILNGLCKTNCVDEAFKIF-QSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIP 751

Query: 421 ENGFYPNVATYGSLANGI 438
            +G  PNV TY  +   I
Sbjct: 752 SHGLVPNVVTYCIMMKNI 769



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 116/280 (41%), Gaps = 29/280 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   +N ++    N G+     +L D M   G +P+V++YN +I     A R      
Sbjct: 546 RPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQ 605

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREGRRDVCKIIRELD 169
           +L+ ++ +G+   + ++ +L+  Y   G ++ A     E + + +  G      I++ L 
Sbjct: 606 LLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLF 665

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                SE +           +L  N I    +  +           Y  ++ G      V
Sbjct: 666 HTRRFSEAK-----------ELYLNMIKSGQQWDIYT---------YNIILNGLCKTNCV 705

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            +  ++  ++  ++     P+ +T+T ++  L K G    A  + A +   G+  N +TY
Sbjct: 706 DEAFKIFQSLCSKD---LRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTY 762

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            I++K   Q+  +D+   L   M + +   PD V  N +I
Sbjct: 763 CIMMKNIIQEGLLDEFDNLFLAM-EKSGCTPDSVMLNAII 801



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D+  EL R +AD A+             G + IDD   AL  F+E+       +  ++  
Sbjct: 10  DRCLELERVIADRAR------------SGSLGIDD---ALKLFDELLPHARPASVRAFNH 54

Query: 363 LMKAFA---LSSQPKLANKVFDEMLR--DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           L+   A    SS  +LA  +F+ M R    +V+ D+  +++L   +CR+G +E       
Sbjct: 55  LLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFG 114

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLK 476
            + + G+  N      L NG+  A++  EA+ +L + + E                P + 
Sbjct: 115 LILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPE------------FGCMPNVV 162

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHG---IPPNKTKYKKI 520
               LL  L +         +ALE++  M E G     PN   Y  I
Sbjct: 163 SCNTLLKGLCN----EKRVEEALELLHTMAEDGGGNCTPNVVTYNTI 205


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 207/480 (43%), Gaps = 84/480 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P    + T V  +   GD   V ++ L       +RK  +   +S  KP+   
Sbjct: 208 MVENGLQPDQITYGTFVDGMCKMGD--TVSALNL-------LRKMEE---ISHIKPNVVI 255

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A+++     G+      LF +M + G  P+++TYN MI     + R      +L+ +L
Sbjct: 256 YSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEML 315

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  I+  + T+ +L+ A+V                                      EG 
Sbjct: 316 ERKISPNVVTYNALINAFV-------------------------------------KEGK 338

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  E+++++LP  I              PN+  Y +++ G+  + R+     M   M 
Sbjct: 339 FFEAAELYDEMLPRGI-------------IPNTITYNSMIDGFCKQDRLDAAEDMFYLMA 385

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD  T+TT++     A  +D   ++L EM R G+ AN +TYN L+ G+C   
Sbjct: 386 TK---GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVG 442

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA---------- 350
            ++ A +L ++M   + + PD+V+ N L+DG         AL  F  M+           
Sbjct: 443 DLNAALDLSQQMIS-SGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 351 -RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G+ P  ++Y  L+       +   A ++++EM     V  D + ++ +++G C+   +
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVP-DTITYSSMIDGLCKQSRL 560

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +EA ++   M    F PNV T+ +L NG   A +  + L L+      CE+ + G+ AD+
Sbjct: 561 DEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF------CEMGRRGIVADA 614



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 188/416 (45%), Gaps = 40/416 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +  +L+      +  + L LF Q+     +PDVLT+  ++    R  R    V +
Sbjct: 149 PDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVAL 204

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+R++E G+     T+ + V      GD   A  +++ M E       ++    + D   
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLC 264

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + +G   D   +F ++    I              PN   Y  ++ G+   GR S   R+
Sbjct: 265 K-DGRHSDSHNLFIEMQDKGI-------------FPNIVTYNCMIGGFCISGRWSAAQRL 310

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++ +   P+ VTY  +++A VK G    A ++  EM   G+  N ITYN ++ G
Sbjct: 311 LQEMLERKIS---PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 367

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           +C+Q ++D A+++   MA      PDV ++  LIDG+     IDD    +   +EM  RG
Sbjct: 368 FCKQDRLDAAEDMFYLMATKG-CSPDVFTFTTLIDGYCGAKRIDD---GMELLHEMPRRG 423

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +    ++Y TL+  F L      A  +  +M+    V  DIV  N L++G C  G +++A
Sbjct: 424 LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-VCPDIVTCNTLLDGLCDNGKLKDA 482

Query: 413 KRIIERMKE-----------NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             + + M++           NG  P+V TY  L  G+    K  EA  L++E+  R
Sbjct: 483 LEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 186/429 (43%), Gaps = 41/429 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P++  ++ ++     SG     +  +L   +++R  K S         P+   
Sbjct: 279 MQDKGIFPNIVTYNCMIGGFCISGRWSAAQ--RLLQEMLER--KIS---------PNVVT 325

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++NA    GK  +  +L+D+M   G  P+ +TYN MI    +  R      +   + 
Sbjct: 326 YNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMA 385

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF +L+  Y G   ++    ++  M   RR +       +   +     GD
Sbjct: 386 TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP--RRGLVANTVTYNTLIHGFCLVGD 443

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +   ++ ++++ + +              P+     TL+ G  + G++ D + M  AM+
Sbjct: 444 LNAALDLSQQMISSGV-------------CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 241 RQ--EDNASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +   + +ASHP      D +TY  ++  L+  G    A ++  EM   G+  + ITY+ +
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C+Q ++D+A ++   M   +   P+VV++N LI+G+         L  F EM  RG
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKS-FSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I    I Y TL+  F        A  +F EM+        I   NML   + +    EE 
Sbjct: 610 IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSK----EEL 665

Query: 413 KRIIERMKE 421
           +R +  +++
Sbjct: 666 ERAVAMLED 674



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 121/281 (43%), Gaps = 21/281 (7%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++ E      D  ++T ++        +  A     ++T++G+  + +T+  LL G C  
Sbjct: 105 QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLD 164

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A +L  ++       PDV+++  L++G         A+   + M   G+ P +I+
Sbjct: 165 HRVSEALDLFHQIC-----RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQIT 219

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T +           A  +  +M     +K ++V ++ +++G C+ G   ++  +   M
Sbjct: 220 YGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEM 279

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           ++ G +PN+ TY  +  G  ++ +   A  L +E+ ER                 + P+ 
Sbjct: 280 QDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLER----------------KISPNV 323

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +AL +  V+   F +A E+   M   GI PN   Y  +
Sbjct: 324 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSM 364



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 45/229 (19%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P V+ +N L+   + ++     ++ + +M  + I     S+T L+K F   S+   A   
Sbjct: 79  PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138

Query: 380 FDEMLR-------------------DPRV-----------KVDIVAWNMLVEGYCRMGLV 409
           F ++ +                   D RV           + D++ +  L+ G CR G V
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRV 198

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            EA  +++RM ENG  P+  TYG+  +G+        AL L ++++E   +         
Sbjct: 199 VEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHI--------- 249

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                 KP+  +  A+ D   +      +  +   M++ GI PN   Y 
Sbjct: 250 ------KPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYN 292


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 183/387 (47%), Gaps = 22/387 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLV 113
           +P+   YN V+    + G+ +  L +  +M E G   P+  TY  +I    +  R    V
Sbjct: 69  RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 128

Query: 114 FVLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            V + +L  G +      + +L+  Y   G L+ A      M E  R V   +   +L  
Sbjct: 129 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVE--RGVAMTVATYNLLV 186

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           ++   +G   +  E+ E++               K  AP+   Y  L+ G+  EG V   
Sbjct: 187 HALFMDGRGTEAYELVEEMGG-------------KGLAPDVFTYNILINGHCKEGNVKKA 233

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M R+   A+    VTYT+++ AL K G +    ++  E  R G+  + + YN L
Sbjct: 234 LEIFENMSRRGVRATV---VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 290

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +     ID+A E++ EM +  +I PD V+YN L+ G  L+     A    +EM  RG
Sbjct: 291 INSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P  ++Y TL+  +++    K A ++ +EM+ +      ++ +N L++G C+ G  ++A
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDA 408

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + +++ M ENG  P+ +TY SL  G++
Sbjct: 409 ENMVKEMVENGITPDDSTYISLIEGLT 435



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 165/390 (42%), Gaps = 89/390 (22%)

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P+    LL +   PN+  Y T++ G+ + GRV   + ++  MR  E     P+  TY TV
Sbjct: 57  PARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMR--ERGGIAPNQYTYGTV 114

Query: 258 VSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQID------------- 303
           +S   K G +D A +V  EM   G V    + YN L+ GYC Q ++D             
Sbjct: 115 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERG 174

Query: 304 ----------------------KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
                                 +A EL+ EM     + PDV +YNILI+G     +   A
Sbjct: 175 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG-LAPDVFTYNILINGHCKEGNVKKA 233

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---------------- 385
           L  F  M  RG+  T ++YT+L+ A +   Q +  +K+FDE +R                
Sbjct: 234 LEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 293

Query: 386 ------------------DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                               R+  D V +N L+ G C +G V+EA+++I+ M + G  P+
Sbjct: 294 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPD 353

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + TY +L +G S+     +AL +      R E+  +G N      P L     L+  L  
Sbjct: 354 LVTYNTLISGYSMKGDVKDALRI------RNEMMNKGFN------PTLLTYNALIQGLC- 400

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              +      A  +V  M E+GI P+ + Y
Sbjct: 401 ---KNGQGDDAENMVKEMVENGITPDDSTY 427



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 18/273 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           P+ VTY TV++     G +  A  ++ EM  R G+  N+ TY  ++ G+C+  ++D+A +
Sbjct: 70  PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 129

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +  EM    +++P+ V YN LI G+        AL + + M  RG+A T  +Y  L+ A 
Sbjct: 130 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 189

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            +  +   A ++ +EM     +  D+  +N+L+ G+C+ G V++A  I E M   G    
Sbjct: 190 FMDGRGTEAYELVEEM-GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRAT 248

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY SL   +S   +  E   L+ E   R                 ++PD  L +AL +
Sbjct: 249 VVTYTSLIYALSKKGQVQETDKLFDEAVRR----------------GIRPDLVLYNALIN 292

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               +    +A EI+  ME+  I P+   Y  +
Sbjct: 293 SHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL 325



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 158/365 (43%), Gaps = 31/365 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P+   + TV+S     G     E+VK+FD ++ +           + KP+   YN
Sbjct: 101 RGGIAPNQYTYGTVISGWCKVGRVD--EAVKVFDEMLTK----------GEVKPEAVMYN 148

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A++    + GK    L   D+M E G    V TYN+++       R      ++E +   
Sbjct: 149 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 208

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+   + T+  L+  +   G+++ A  I + M   RR V   +       Y+   +G   
Sbjct: 209 GLAPDVFTYNILINGHCKEGNVKKALEIFENM--SRRGVRATVVTYTSLIYALSKKGQVQ 266

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           + D++F++ +   I P             +  +Y  L+  +   G +     ++G M ++
Sbjct: 267 ETDKLFDEAVRRGIRP-------------DLVLYNALINSHSTSGNIDRAFEIMGEMEKK 313

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD VTY T++  L   G +D AR+++ EMT+ G+  + +TYN L+ GY  +  +
Sbjct: 314 R---IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDV 370

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A  +  EM +     P +++YN LI G         A     EM   GI P   +Y +
Sbjct: 371 KDALRIRNEMMNKG-FNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 429

Query: 363 LMKAF 367
           L++  
Sbjct: 430 LIEGL 434



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 116/252 (46%), Gaps = 22/252 (8%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  + A+M R+ +P    T+NI+L+  C   +  +A ELLR+M       P+ V+YN +I
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP-----RPNAVTYNTVI 79

Query: 330 DGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
            GF        AL    EMR RG IAP + +Y T++  +    +   A KVFDEML    
Sbjct: 80  AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 139

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           VK + V +N L+ GYC  G ++ A    +RM E G    VATY  L + + +  +  EA 
Sbjct: 140 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 199

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L +E+  +                 L PD    + L +   +    +KALEI   M   
Sbjct: 200 ELVEEMGGK----------------GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR 243

Query: 509 GIPPNKTKYKKI 520
           G+      Y  +
Sbjct: 244 GVRATVVTYTSL 255


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/493 (23%), Positives = 217/493 (44%), Gaps = 41/493 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +  P+   +  VL +    GK +   +LF+QM + G  PD + YN++I   A+  R    
Sbjct: 3   ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEA 62

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             + E ++ +G+   + T+ SL+ A+     ++ A  + + M E          E D+  
Sbjct: 63  NRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGF-------EPDVVT 115

Query: 173 YSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           YS+   G        E  E L            ++ +  + N+  Y  L+ G   +  + 
Sbjct: 116 YSTIISGLCKTGKVTEALEMLFHK---------MIERGCSANTVAYNALINGLCKDENIE 166

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              ++L  M  +      PD++TY T++S L + G +  A+Q    M   G   + + YN
Sbjct: 167 RAYKLLEEMASK---GYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYN 223

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            LL    ++ + D+A +L +++     + PD V+YN ++ G     +   A   F +M A
Sbjct: 224 GLLDALYKEGKTDEAMKLFKDVIAKGYM-PDTVTYNSILLGLARKSNMDEAEEMFKKMVA 282

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G AP   +Y+ ++     + +   A+KV +EM +   V  D+V +N+L++G C+  LV+
Sbjct: 283 SGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVP-DVVTYNILLDGLCKTNLVD 341

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A  +   M +NG  P++ +Y  + NG+    K  +A +L+  + ER             
Sbjct: 342 KAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER------------- 388

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRM 528
               L PD    + L D   +A    +A +++  M   G  P+   Y  +   +    R 
Sbjct: 389 ---KLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRH 445

Query: 529 FTSKHASQARQDR 541
             +   +QA +++
Sbjct: 446 IQADRLTQAMKEK 458



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 179/391 (45%), Gaps = 26/391 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +P    YN++LNA     K K+ ++LF  M E G +PDV+TY+ +I  LC        L 
Sbjct: 75  EPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALE 134

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDV 161
            +  +++E G +     + +L+       ++E A  +++ M                  +
Sbjct: 135 MLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGL 194

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNS 213
           C++ +  + + +           D V    L +++    +          ++ K + P++
Sbjct: 195 CRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDT 254

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y +++ G   +  + +   M    ++   +   P+  TY+ V+S   +A  +D A +V
Sbjct: 255 VTYNSILLGLARKSNMDEAEEMF---KKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKV 311

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM++IG   + +TYNILL G C+   +DKA EL   M D+    PD+VSY+++++G  
Sbjct: 312 LEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG-CAPDIVSYSVVLNGLC 370

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
             +    A   F+ M  R + P  +++  LM     + +   A  + D+M        D 
Sbjct: 371 KTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSG-CAPDY 429

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           VA+N L+ G  + G   +A R+ + MKE GF
Sbjct: 430 VAYNTLMNGLRKQGRHIQADRLTQAMKEKGF 460



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 159/392 (40%), Gaps = 81/392 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLF------------------------- 35
           M   G+ P V  +ST++S L  +G     E++++                          
Sbjct: 104 MAEKGFEPDVVTYSTIISGLCKTGK--VTEALEMLFHKMIERGCSANTVAYNALINGLCK 161

Query: 36  DVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
           D  ++R  K  +        PD   YN +L+    +GK  +  Q FD M   G  PDV+ 
Sbjct: 162 DENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVA 221

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           YN ++    +  +    + + + ++  G      T+ S++                    
Sbjct: 222 YNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLG------------------ 263

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
                   + R+ ++           D+ +E+F+K++ +               APN   
Sbjct: 264 --------LARKSNM-----------DEAEEMFKKMVASGC-------------APNGAT 291

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y+ ++ G+    +V D  ++L  M +     + PD VTY  ++  L K   +D+A ++ +
Sbjct: 292 YSIVLSGHCRAKKVDDAHKVLEEMSKI---GAVPDVVTYNILLDGLCKTNLVDKAHELFS 348

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   + ++Y+++L G C+  ++  A+ L   M  + K+ PDVV++NIL+DG    
Sbjct: 349 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMI-ERKLVPDVVTFNILMDGLCKA 407

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
                A    ++M   G AP  ++Y TLM   
Sbjct: 408 GKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL 439



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 1/107 (0%)

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           R  +P + ++  ++K+F    + +   K+F++ML D  +  D + +N+L++GY + G V+
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQML-DNGISPDGIEYNILIDGYAKKGRVD 60

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA R+ E M   G  P++ TY SL N      K  EA+ L+K + E+
Sbjct: 61  EANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEK 107


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 186/418 (44%), Gaps = 26/418 (6%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   P    +  +L A ANL + +  +    +M  +G   D+ ++ ++I    R SR   
Sbjct: 65  SQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSF 124

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + VL +++++G    + TF SL+  +     +  A ++V  M        K   E ++ 
Sbjct: 125 ALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM-------VKSGYEPNVV 177

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y++  +G   + +      L N +          K    +   Y TL+ G    GR SD
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEMEK--------KGLGADVVTYNTLLTGLCYSGRWSD 229

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             RML  M ++  N   PD VT+T ++   VK G++D A+++  EM +  V  N +TYN 
Sbjct: 230 AARMLRDMMKRSIN---PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++ G C   ++  AK+    MA      P+VV+YN LI GF         +  F  M   
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G      +Y TL+  +    + ++A  +F  M+   RV  DI+   +L+ G C  G +E 
Sbjct: 346 GFNADIFTYNTLIHGYCQVGKLRVALDIFCWMV-SRRVTPDIITHCILLHGLCVNGEIES 404

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           A    + M+E+  Y  +  Y  + +G+  A K  +A  L+      C +  EGV  D+
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELF------CRLPVEGVKPDA 456



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/423 (21%), Positives = 182/423 (43%), Gaps = 68/423 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ GY P +  + +++         G       F +V+  V+   +P++V         
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDA-----FSLVILMVKSGYEPNVV--------V 178

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     G+    L+L ++M + G   DV+TYN ++     + R      +L  ++
Sbjct: 179 YNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM 238

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +  I   + TF +L+  +V                                      +G+
Sbjct: 239 KRSINPDVVTFTALIDVFV-------------------------------------KQGN 261

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D+  E++++++ +S++P             N+  Y +++ G    GR+ D  +    M 
Sbjct: 262 LDEAQELYKEMIQSSVDP-------------NNVTYNSIINGLCMHGRLYDAKKTFDLMA 308

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+ VTY T++S   K   +D   ++   M+  G  A+  TYN L+ GYCQ  
Sbjct: 309 SK---GCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVG 365

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++  A ++   M    ++ PD++++ IL+ G  +  +   AL  F++MR        ++Y
Sbjct: 366 KLRVALDIFCWMV-SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAY 424

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++     + + + A ++F  +  +  VK D   + +++ G C+ G   EA  +I RMK
Sbjct: 425 NIMIHGLCKADKVEKAWELFCRLPVEG-VKPDARTYTIMILGLCKNGPRREADELIRRMK 483

Query: 421 ENG 423
           E G
Sbjct: 484 EEG 486



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 19/217 (8%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I  D+ S+ ILI  F      + AL+   +M   G  P+ +++ +L+  F L ++   A 
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +   M++    + ++V +N L++G C+ G +  A  ++  M++ G   +V TY +L  G
Sbjct: 162 SLVILMVKSG-YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +  + +  +A  + +++ +R                 + PD     AL D+ V+     +
Sbjct: 221 LCYSGRWSDAARMLRDMMKR----------------SINPDVVTFTALIDVFVKQGNLDE 264

Query: 498 ALEIVACMEEHGIPPNKTKYKKIY--VEMHSRMFTSK 532
           A E+   M +  + PN   Y  I   + MH R++ +K
Sbjct: 265 AQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 58/295 (19%)

Query: 29  VESVKLFDVVVKR-----VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQ 83
           V    L DV VK+      ++     I S   P+   YN+++N     G+     + FD 
Sbjct: 247 VTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDL 306

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M   G  P+V+TYN +I    +       + + +R+   G    + T+ +L+  Y   G 
Sbjct: 307 MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203
           L +A  I   M                                                 
Sbjct: 367 LRVALDIFCWM------------------------------------------------- 377

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
            + +   P+   +  L+ G    G +   +     MR  E    +   V Y  ++  L K
Sbjct: 378 -VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESE---KYIGIVAYNIMIHGLCK 433

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           A  +++A ++   +   GV  +  TY I++ G C+     +A EL+R M ++  I
Sbjct: 434 ADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGII 488


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 140/600 (23%), Positives = 247/600 (41%), Gaps = 88/600 (14%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P  ++++ V+S LA +  D   +++ L+  +V R R            P T  + 
Sbjct: 132 RFGVQPSFRSYNVVLSVLARA--DCHADALALYRRMVHRDR----------VPPTTFTFG 179

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILE 121
               A   LG+  + L L   M   G  PD + Y  +I  LC +         + E +L 
Sbjct: 180 VAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLL- 238

Query: 122 MGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG-----------RRDVCKI----- 164
           MG    + TF  +V    G G + E A  + + M +G            + +C++     
Sbjct: 239 MGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADE 298

Query: 165 -------IRELDLEDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
                  + EL++  +++       EG   +  E++E +               K   P+
Sbjct: 299 ARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGL-------------KGCQPD 345

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           +  Y+ LM G    GR+S  VR+L   R  E     P+ VTYT V+ +  K G  D  R 
Sbjct: 346 AHTYSILMHGLCKLGRISSAVRLL---REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRA 402

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +L EM+  G+  N   YN ++   C+  ++D+A  L++EM       PD+ SYN +I   
Sbjct: 403 LLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQG-CNPDICSYNTIIYHL 461

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
              +    A   F  +   G+    I+Y T++ A     + + A ++  EM+      +D
Sbjct: 462 CNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-CSLD 520

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +V++N L++  C+ G V+ +  ++E M E G  PN  +Y  L + +   R+  +AL    
Sbjct: 521 VVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL---- 576

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                 E+ K+ +N        L PD    + L +   +  +   AL ++  +    + P
Sbjct: 577 ------ELSKQMLNQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHP 624

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQARQ----------DRRRERKRAAEAFKFWLGLPNSY 562
           +   Y  I +  H ++     A+              DRR  +    + FK +L   +SY
Sbjct: 625 DIITY-NILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPDKNFKLYLHTKDSY 683



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 107/279 (38%), Gaps = 25/279 (8%)

Query: 269 RARQVLAEMTR-IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           RA  +L ++ R  GV  +  +YN++L    +      A  L R M    ++ P   ++ +
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
                  +  +  AL     M   G  P  + Y T++ A         A  + +EML   
Sbjct: 181 AARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLL-M 239

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               D+  ++ +V G C +G V EA R+++RM   G  P V TYG L  G+   R+  EA
Sbjct: 240 GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA 299

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             +   + E   V                    L + +   C+      +A E+   M  
Sbjct: 300 RAMLGRVPELNVV--------------------LFNTVIGGCLAEGKLAEATELYETMGL 339

Query: 508 HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERK 546
            G  P+   Y    + MH      + +S  R  R  E+K
Sbjct: 340 KGCQPDAHTYS---ILMHGLCKLGRISSAVRLLREMEKK 375


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 135/568 (23%), Positives = 227/568 (39%), Gaps = 123/568 (21%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP  ++ + ++ RL+ SG+              + VRKF +  I +   P    YN +++
Sbjct: 251 LPKARSCNFLLHRLSKSGNG-------------QLVRKFFNDMIGAGIAPSVFTYNVMID 297

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                G  +   +LF QM E G  PDV+TYN +I    +      +  +   + ++G   
Sbjct: 298 YLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVP 357

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+  L+  Y                       CK                       
Sbjct: 358 DIITYNGLINCY-----------------------CK----------------------- 371

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
            FEK+ P +    SE  +      PN   Y+TL+  +  EG +   +++   MRR     
Sbjct: 372 -FEKM-PRAFEYFSE--MKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRR---TG 424

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P+  TYT+++ A  KAG++  A ++L +M + GV  N +TY  LL G C+  ++ +A+
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 484

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN-------------------- 346
           E+ R M  D  I P+   Y  L+ G+I  +    A+                        
Sbjct: 485 EVFRSMLKDG-ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 543

Query: 347 ---------------EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                          EM++RGI+   +  TT++ A+  + +   A   F EM +D  V+ 
Sbjct: 544 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM-QDVGVEA 602

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            IV + +L++G C+ G+VE A     RM   G  PNVA Y SL +G+        A  L+
Sbjct: 603 TIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLF 662

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
            E++ R                 + PD     AL D  ++    ++AL +++ M E  I 
Sbjct: 663 DEMQCR----------------GMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIE 706

Query: 512 PNKTKYKKIYVEMHSRMFTSKHASQARQ 539
            +      +Y  + S         QAR+
Sbjct: 707 FD----LHVYTSLVSGFSQCGELHQARK 730



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 183/402 (45%), Gaps = 20/402 (4%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++N      K  +  + F +M   G KP+V+TY+ +I    +       + +
Sbjct: 357 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKL 416

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G+     T+ SL+ A    G+L  A  ++  M +    +  I+    L D   
Sbjct: 417 FVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKL-NIVTYTALLDGLC 475

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +  G   + +EVF  +L + I             +PN ++YT L+ GY+   R+ D +++
Sbjct: 476 K-AGRMIEAEEVFRSMLKDGI-------------SPNQQVYTALVHGYIKAERMEDAMKI 521

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M   E N   PD + Y +++        ++  + +L EM   G+ AN +    ++  
Sbjct: 522 LKQM--TECNIK-PDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 578

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +  +   A    +EM  D  +E  +V+Y +LIDG         A+ +F  M + G+ P
Sbjct: 579 YFKAGKSSDALNFFQEM-QDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQP 637

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
               YT+L+     ++  + A K+FDEM +   +  DI A+  L++G  + G ++EA  +
Sbjct: 638 NVAVYTSLIDGLCKNNCIESAKKLFDEM-QCRGMTPDITAFTALIDGNLKHGNLQEALVL 696

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           I RM E     ++  Y SL +G S   +  +A   + E+ E+
Sbjct: 697 ISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEK 738



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 186/431 (43%), Gaps = 35/431 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M  +G  P+V  +ST++    A   +G ++ ++KLF V ++R          +   P+  
Sbjct: 385 MKNNGLKPNVVTYSTLID---AFCKEGMMQGAIKLF-VDMRR----------TGLLPNEF 430

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y ++++A    G   +  +L + M + G K +++TY  ++    +A R      V   +
Sbjct: 431 TYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM 490

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+ GI+     + +LV  Y+    +E A  I++ M E     C I  +L L  Y S   G
Sbjct: 491 LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE-----CNIKPDLIL--YGSIIWG 543

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                     KL+   +          +  + N  I TT++  Y   G+ SD +     M
Sbjct: 544 HCSQRKLEETKLILEEMKS--------RGISANPVISTTIIDAYFKAGKSSDALNFFQEM 595

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
              +D       VTY  ++  L KAG ++ A      M  +G+  N   Y  L+ G C+ 
Sbjct: 596 ---QDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKN 652

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             I+ AK+L  EM     + PD+ ++  LIDG +   +   AL   + M    I      
Sbjct: 653 NCIESAKKLFDEMQCRG-MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHV 711

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT+L+  F+   +   A K F+EM+    +  +++   +L E Y R G ++EA  +   M
Sbjct: 712 YTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR-GQLDEAIELKNEM 770

Query: 420 KENGFYPNVAT 430
           +  G     AT
Sbjct: 771 ERMGLITESAT 781



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 18/233 (7%)

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            +++L   + +   +++A E    M +  +  P   S N L+       +      FFN+
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRN-FRTLPKARSCNFLLHRLSKSGNGQLVRKFFND 279

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M   GIAP+  +Y  ++         + + ++F +M R+  +  D+V +N L++GY ++G
Sbjct: 280 MIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQM-REMGLSPDVVTYNSLIDGYGKVG 338

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            +EE   +   MK+ G  P++ TY  L N      K   A   + E+K            
Sbjct: 339 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN---------- 388

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  LKP+      L D   +    + A+++   M   G+ PN+  Y  +
Sbjct: 389 ------GLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSL 435


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 182/387 (47%), Gaps = 22/387 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLV 113
           +P+   YN V+    + G+ +  L +  +M E G   P+  TY  +I    +  R    V
Sbjct: 142 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 201

Query: 114 FVLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            V + +L  G +      + +L+  Y   G L+ A      M E  R V   +   +L  
Sbjct: 202 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVE--RGVAMTVATYNLLV 259

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           ++   +G   +  E+ E++               K  AP+   Y  L+ G+  EG V   
Sbjct: 260 HALFMDGRGTEAYELVEEMGG-------------KGLAPDVFTYNILINGHCKEGNVKKA 306

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M R+   A+    VTYT ++ AL K G +    ++  E  R G+  + + YN L
Sbjct: 307 LEIFENMSRRGVRATV---VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 363

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +     ID+A E++ EM +  +I PD V+YN L+ G  L+     A    +EM  RG
Sbjct: 364 INSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 422

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P  ++Y TL+  +++    K A ++ +EM+ +      ++ +N L++G C+ G  ++A
Sbjct: 423 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDA 481

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + +++ M ENG  P+ +TY SL  G++
Sbjct: 482 ENMVKEMVENGITPDDSTYISLIEGLT 508



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 164/390 (42%), Gaps = 89/390 (22%)

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P+    LL +   PN+  Y T++ G+ + GRV   + ++  MR  E     P+  TY TV
Sbjct: 130 PARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMR--ERGGIAPNQYTYGTV 187

Query: 258 VSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQID------------- 303
           +S   K G +D A +V  EM   G V    + YN L+ GYC Q ++D             
Sbjct: 188 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERG 247

Query: 304 ----------------------KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
                                 +A EL+ EM     + PDV +YNILI+G     +   A
Sbjct: 248 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG-LAPDVFTYNILINGHCKEGNVKKA 306

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---------------- 385
           L  F  M  RG+  T ++YT L+ A +   Q +  +K+FDE +R                
Sbjct: 307 LEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 366

Query: 386 ------------------DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                               R+  D V +N L+ G C +G V+EA+++I+ M E G  P+
Sbjct: 367 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 426

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + TY +L +G S+     +AL      + R E+  +G N      P L     L+  L  
Sbjct: 427 LVTYNTLISGYSMKGDVKDAL------RIRNEMMNKGFN------PTLLTYNALIQGLC- 473

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              +      A  +V  M E+GI P+ + Y
Sbjct: 474 ---KNGQGDDAENMVKEMVENGITPDDSTY 500



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 157/365 (43%), Gaps = 31/365 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P+   + TV+S     G     E+VK+FD ++ +           + KP+   YN
Sbjct: 174 RGGIAPNQYTYGTVISGWCKVGRVD--EAVKVFDEMLTK----------GEVKPEAVMYN 221

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A++    + GK    L   D+M E G    V TYN+++       R      ++E +   
Sbjct: 222 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 281

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+   + T+  L+  +   G+++ A  I + M   RR V   +       Y+   +G   
Sbjct: 282 GLAPDVFTYNILINGHCKEGNVKKALEIFENM--SRRGVRATVVTYTALIYALSKKGQVQ 339

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           + D++F++ +   I P             +  +Y  L+  +   G +     ++G M ++
Sbjct: 340 ETDKLFDEAVRRGIRP-------------DLVLYNALINSHSTSGNIDRAFEIMGEMEKK 386

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD VTY T++  L   G +D AR+++ EMT  G+  + +TYN L+ GY  +  +
Sbjct: 387 R---IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 443

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A  +  EM +     P +++YN LI G         A     EM   GI P   +Y +
Sbjct: 444 KDALRIRNEMMNKG-FNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 502

Query: 363 LMKAF 367
           L++  
Sbjct: 503 LIEGL 507



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 116/252 (46%), Gaps = 22/252 (8%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  + A+M R+ +P    T+NI+L+  C   +  +A ELLR+M       P+ V+YN +I
Sbjct: 98  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP-----RPNAVTYNTVI 152

Query: 330 DGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
            GF        AL    EMR RG IAP + +Y T++  +    +   A KVFDEML    
Sbjct: 153 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 212

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           VK + V +N L+ GYC  G ++ A    +RM E G    VATY  L + + +  +  EA 
Sbjct: 213 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 272

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L +E+  +                 L PD    + L +   +    +KALEI   M   
Sbjct: 273 ELVEEMGGK----------------GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR 316

Query: 509 GIPPNKTKYKKI 520
           G+      Y  +
Sbjct: 317 GVRATVVTYTAL 328


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 144/559 (25%), Positives = 242/559 (43%), Gaps = 70/559 (12%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P  ++ + V+SRL         E++ LF       R+  D ++ S        +N +
Sbjct: 223 GLSPSPESCNAVLSRLPLD------EAIALF-------RELPDKNVCS--------HNIL 261

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           L A  + G+ K   Q FD+M    + PDV+TY  M+   C R   ++  V +L+ +   G
Sbjct: 262 LKALLSAGRLKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGELEN-AVKLLDEMAAKG 317

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +    T + S++A     G +  A  +++ M      +  ++    +  + S  +GD   
Sbjct: 318 LESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCS--KGDLAA 375

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
              +FE+             +  +  A +   +T L+ G    G + +  R+L  M    
Sbjct: 376 ARRLFEE-------------MQKRGLAADRVTHTALINGLCRAGELKEADRVLQEM---V 419

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           D     D VTYT ++    K G+M  A +V  EM    V  N +TY  L  G C+Q  + 
Sbjct: 420 DKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVR 479

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            A ELL EM +   +E +V +YN LI+G     +   A+    EM A G      +YTTL
Sbjct: 480 AANELLHEMCNKG-LELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTL 538

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +     S +   A+ +  EML D  +K  I  +N+L+ G+C  G VE  K+++E M E  
Sbjct: 539 IDTLCKSGEFDRAHNMLQEML-DKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKN 597

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PNV TY SL           +   + K +K   E+ K G+++       + P+E   +
Sbjct: 598 VRPNVVTYNSLM----------KQYCIDKNMKSTTEIYK-GMHSQE-----VAPNENTYN 641

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ--DR 541
            L     +A   ++AL     M E G+    + Y  +   ++ +    K  S+AR   D+
Sbjct: 642 ILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKK----KKFSEARVFFDK 697

Query: 542 RRERKRAAE--AFKFWLGL 558
            R     AE   + F++ +
Sbjct: 698 MRNEGLTAEPDVYSFYMDI 716



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 180/412 (43%), Gaps = 23/412 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   +  V++   + G      +LF++M + G   D +T+  +I    RA        VL
Sbjct: 356 DAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVL 415

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + +++ G+ + + T+  L+  Y   G++  A  +   M  GRR    ++    L D   +
Sbjct: 416 QEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEM-VGRRVAPNVVTYTALSDGLCK 474

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +GD    +E+  ++               K    N   Y +L+ G    G +   +R++
Sbjct: 475 -QGDVRAANELLHEMCN-------------KGLELNVYTYNSLINGLCKFGNLEQAMRIM 520

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M   E      D  TYTT++  L K+G  DRA  +L EM   G+  +  TYN+L+ G+
Sbjct: 521 TEM---EAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGF 577

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C   +++  K+LL  M +   + P+VV+YN L+  + +  +       +  M ++ +AP 
Sbjct: 578 CMSGRVEGGKKLLEWMLEK-NVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPN 636

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           + +Y  L+K    +   K A     EM+ +  +++   +++ L+    +     EA+   
Sbjct: 637 ENTYNILIKGHCKARNMKEALYFHQEMI-EKGLRLTASSYSALIRLLNKKKKFSEARVFF 695

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEA-LLLWKEIKERCEVK-KEGVN 466
           ++M+  G       Y S    IS      E+ + L  E+ E   VK K G N
Sbjct: 696 DKMRNEGLTAEPDVY-SFYMDISFNEDNLESTITLCDELVEASHVKSKAGTN 746



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 13/130 (10%)

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           + ELLR +     + P   S N ++    L +    A+  F E+  + +     S+  L+
Sbjct: 212 SAELLRRLRQYG-LSPSPESCNAVLSRLPLDE----AIALFRELPDKNVC----SHNILL 262

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           KA   + + K A + FDEM   P    D+V +  +V GYC  G +E A ++++ M   G 
Sbjct: 263 KALLSAGRLKDACQHFDEMSSPP----DVVTYGTMVHGYCVRGELENAVKLLDEMAAKGL 318

Query: 425 YPNVATYGSL 434
             N   Y S+
Sbjct: 319 ESNATVYTSV 328


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 179/376 (47%), Gaps = 56/376 (14%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF-VLER 118
           A++A+++A    G   + +++F  M ++G KP+++TYN +I  C +   +   V  + + 
Sbjct: 114 AFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDE 173

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +L  G+     TF SL+A     G  E A ++           C+++           N 
Sbjct: 174 MLRNGMQPDRITFNSLLAVCSKGGLWEAARSLS----------CEMV-----------NR 212

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G D D   +F                           Y TL+      G++     ++  
Sbjct: 213 GIDQD---IF--------------------------TYNTLLDAVCKGGQLDMAFEIMSE 243

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      P+ VTY+T++    KAG +D AR +  EM  +G+  +R++YN LL  Y +
Sbjct: 244 MPAKN---ILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAK 300

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             + ++A ++ REM +++ I  DVV+YN L+ G+            F EM+AR ++P  +
Sbjct: 301 LGRFEEAMDVCREM-ENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLL 359

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y+TL+  ++     + A  VF E  +   +K D+V ++ L++  C+ GLVE A  +++ 
Sbjct: 360 TYSTLIDVYSKGGLYREAMDVFRE-FKKAGLKADVVLYSALIDALCKNGLVESAVSLLDE 418

Query: 419 MKENGFYPNVATYGSL 434
           M + G  PNV TY S+
Sbjct: 419 MTKEGIRPNVVTYNSI 434



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 132/276 (47%), Gaps = 18/276 (6%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N   PD +T+ ++++   K G  + AR +  EM   G+  +  TYN LL   C+  Q+D 
Sbjct: 177 NGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDM 236

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A E++ EM     I P+VV+Y+ +IDG+        A   FNEM+  GI+  ++SY TL+
Sbjct: 237 AFEIMSEMPAK-NILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLL 295

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             +A   + + A  V  EM  +  ++ D+V +N L+ GY +    +  +++ E MK    
Sbjct: 296 SIYAKLGRFEEAMDVCREM-ENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHV 354

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            PN+ TY +L +  S      EA+ +++E K+                  LK D  L  A
Sbjct: 355 SPNLLTYSTLIDVYSKGGLYREAMDVFREFKK----------------AGLKADVVLYSA 398

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L D   +      A+ ++  M + GI PN   Y  I
Sbjct: 399 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 434



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 109/519 (21%), Positives = 190/519 (36%), Gaps = 135/519 (26%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L  GY   V A+S ++S    SG     E++K+F         +S  D     KP+   Y
Sbjct: 104 LTEGYGNTVYAFSAIISAYGRSGYCN--EAIKIF---------YSMKDY--GLKPNLVTY 150

Query: 62  NAVLNACANLG-KPKKFLQLFDQMHEFGAKPD---------------------------- 92
           NAV++AC   G + K+ L++FD+M   G +PD                            
Sbjct: 151 NAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMV 210

Query: 93  -------VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
                  + TYN ++    +  +  +   ++  +    I   + T+ +++  Y   G L+
Sbjct: 211 NRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLD 270

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            A  +   M                                   K L  S++  S     
Sbjct: 271 DARNLFNEM-----------------------------------KFLGISLDRVS----- 290

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                     Y TL+  Y   GR  +    +   R  E++    D VTY  ++    K  
Sbjct: 291 ----------YNTLLSIYAKLGRFEEA---MDVCREMENSGIRKDVVTYNALLGGYGKQY 337

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
             D  R+V  EM    V  N +TY+ L+  Y +     +A ++ RE    A ++ DVV Y
Sbjct: 338 KYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREF-KKAGLKADVVLY 396

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           + LID          A++  +EM   GI P  ++Y +++ AF    +P     V D+  +
Sbjct: 397 SALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG---RPATTESVVDDAGQ 453

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE---------------------------- 417
              +++D ++ + + +    +    E  RII+                            
Sbjct: 454 TSELQIDSLSSSAVEKATKSLVADREDNRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVF 513

Query: 418 -RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            +M E    PNV T+ ++ N  S      EA +L +E++
Sbjct: 514 HKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEELR 552


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 183/401 (45%), Gaps = 20/401 (4%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +Y  V+N     G   K    + +M +    PDV+TY+ +I    +       +
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +++ G+     T+ S++  Y      + A   ++ MR    +   ++    L DY
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEP-DVVTYNSLMDY 310

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +N G   +  ++F+ +    + P             +   Y TL++GY  +G + +  
Sbjct: 311 LCKN-GRSTEARKIFDSMTKRGLEP-------------DIATYCTLLQGYATKGALVEMH 356

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M R   N  HPDH  +  ++ A  K   +D A  V ++M + G+  N +TY  ++
Sbjct: 357 ALLDLMVR---NGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVI 413

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+   +D A     +M D+  + P+++ Y  LI    + D    A     EM  RGI
Sbjct: 414 GILCKSGSVDDAMLYFEQMIDEG-LTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               I + +++ +     +   + K+FD M+R   VK +++ ++ L++GYC  G ++EA 
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVR-IGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++  M   G  P+  TY +L NG     +  +AL L+KE+
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEM 572



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 202/492 (41%), Gaps = 108/492 (21%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P V TY ++I  C RA R  L    L  +++ G  +   T
Sbjct: 65  PAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAIT 124

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+                       + +C   R  D  D              V  +
Sbjct: 125 FTPLL-----------------------KGLCADKRTSDAMDI-------------VLRR 148

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +        +E   +P  F+      T L+KG  +E R  + + +L  M       S PD
Sbjct: 149 M--------TELSCMPDVFSC-----TILLKGLCDENRSQEALELLHMMADDRGGGSAPD 195

Query: 251 HVTYTTV-----------------------------------VSALVKAGSMDRARQVLA 275
            V+YTTV                                   ++AL K  +MD+A +VL 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLT 255

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M + GV  N +TYN +L GYC   Q  +A   L++M  D  +EPDVV+YN L+D     
Sbjct: 256 TMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG-VEPDVVTYNSLMDYLCKN 314

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             S  A   F+ M  RG+ P   +Y TL++ +A        + + D M+R+  +  D   
Sbjct: 315 GRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG-IHPDHHV 373

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L+  Y +   V+EA  +  +M+++G  PNV TYG++   +  +    +A+L ++++ 
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM- 432

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                       D  L P +     L+ +L   C+    + KA E++  M + GI  N  
Sbjct: 433 -----------IDEGLTPNIIVYTSLIHSL---CIFDK-WDKAEELILEMLDRGICLNTI 477

Query: 516 KYKKIYVEMHSR 527
            +  I   +HS 
Sbjct: 478 FFNSI---IHSH 486



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/474 (21%), Positives = 211/474 (44%), Gaps = 70/474 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-KPDTA 59
           M+++G +P+   +++++    +S  + P E++      +K++R        SD  +PD  
Sbjct: 257 MVKNGVMPNCMTYNSILHGYCSS--EQPKEAIGF----LKKMR--------SDGVEPDVV 302

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++     G+  +  ++FD M + G +PD+ TY  +++  A       +  +L+ +
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLM 362

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIRE 167
           +  GI      F  L+ AY     ++ A  +   MR+   +            +CK    
Sbjct: 363 VRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCK---- 418

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPS-------------------SEP---PLL 205
                      G  DD    FE+++   + P+                   +E     +L
Sbjct: 419 ----------SGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEML 468

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            +    N+  + +++  +  EGRV ++ ++   M R       P+ +TY+T++     AG
Sbjct: 469 DRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRI---GVKPNVITYSTLIDGYCLAG 525

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            MD A ++L+ M  +G+  + +TYN L+ GYC+  ++D A  L +EM     + P++++Y
Sbjct: 526 KMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITY 584

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-L 384
           NI++ G      +A A   +  +   G      +Y  ++     ++    A ++F  + L
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 644

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            D  ++++   +N+++    ++G  +EAK +      NG  PN  TY  +A  I
Sbjct: 645 TD--LQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/479 (20%), Positives = 208/479 (43%), Gaps = 54/479 (11%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK-------- 55
            G  P V +++TV++     GD     S K +    + + +   PD+V+ S         
Sbjct: 190 GGSAPDVVSYTTVINGFFKEGD-----SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKG 244

Query: 56  -------------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
                              P+   YN++L+   +  +PK+ +    +M   G +PDV+TY
Sbjct: 245 QAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTY 304

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-R 155
           N ++    +  R      + + + + G+   + T+ +L+  Y   G L     ++  M R
Sbjct: 305 NSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVR 364

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
            G      +   L +  Y+ + +   D+   VF K+  + +NP             N   
Sbjct: 365 NGIHPDHHVFNIL-ICAYAKQEK--VDEAMLVFSKMRQHGLNP-------------NVVT 408

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  ++      G V D +     M    D    P+ + YT+++ +L      D+A +++ 
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMI---DEGLTPNIIVYTSLIHSLCIFDKWDKAEELIL 465

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM   G+  N I +N ++  +C++ ++ ++++L   M     ++P+V++Y+ LIDG+ L 
Sbjct: 466 EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVR-IGVKPNVITYSTLIDGYCLA 524

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A    + M + G+ P  ++Y TL+  +   S+   A  +F EM+    V  +I+ 
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG-VSPNIIT 583

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +N++++G         AK +   + ++G    ++TY  + +G+       EAL +++ +
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 642



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 185/423 (43%), Gaps = 33/423 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P +  + T++   A  G    VE   L D++V+           +   PD   
Sbjct: 327 MTKRGLEPDIATYCTLLQGYATKG--ALVEMHALLDLMVR-----------NGIHPDHHV 373

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A A   K  + + +F +M + G  P+V+TY  +I +  ++      +   E+++
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMI 433

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+T  +  + SL+ +   F   + AE ++  M +  R +C      +   +S   EG 
Sbjct: 434 DEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLD--RGICLNTIFFNSIIHSHCKEGR 491

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++F+ ++   + P             N   Y+TL+ GY   G++ +  ++L +M 
Sbjct: 492 VIESEKLFDLMVRIGVKP-------------NVITYSTLIDGYCLAGKMDEATKLLSSMF 538

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD VTY T+++   +   MD A  +  EM   GV  N ITYNI+L+G     
Sbjct: 539 SV---GMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTR 595

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +   AKEL   +      + ++ +YNI++ G    + +  AL  F  +    +     ++
Sbjct: 596 RTAAAKELYVGITKSGT-QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++ A     +   A  +F     +  V  +   + ++ E     GL+EE  ++   M+
Sbjct: 655 NIMIGALLKVGRNDEAKDLFVAFSSNGLVP-NYWTYRLMAENIIGQGLLEELDQLFFSME 713

Query: 421 ENG 423
           +NG
Sbjct: 714 DNG 716



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 109/275 (39%), Gaps = 31/275 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G  P+V  +ST++     +G     E+ KL   +      FS        KPD   
Sbjct: 502 MVRIGVKPNVITYSTLIDGYCLAGKMD--EATKLLSSM------FS-----VGMKPDCVT 548

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N    + +    L LF +M   G  P+++TYN++++      R      +   I 
Sbjct: 549 YNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGIT 608

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G  L ++T+  ++         + A  + Q +     D+    R  ++   +    G 
Sbjct: 609 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL--CLTDLQLETRTFNIMIGALLKVGR 666

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           +D+  ++F     N +              PN   Y  + +  + +G + +  ++  +M 
Sbjct: 667 NDEAKDLFVAFSSNGL-------------VPNYWTYRLMAENIIGQGLLEELDQLFFSM- 712

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
             EDN    D      +V  L++ G + RA   L+
Sbjct: 713 --EDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 189/407 (46%), Gaps = 23/407 (5%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  KP+   Y+ ++   A+ G+ ++  +L D M   G  PD+  YN +I   ++A +   
Sbjct: 378 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 437

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDL 170
               L  I   G+     TF + +  Y   G + E A+   + +  G      +   L  
Sbjct: 438 ASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 497

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             + +   G+  +   +F  L    +              P+ +  +  + G +  GRV 
Sbjct: 498 GHFKA---GNLMEALSIFRHLHALGV-------------LPDVQTCSAFIHGLLKNGRVQ 541

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +++   ++ +      PD  TY++++S   K G +++A ++  EM   G+  N   YN
Sbjct: 542 EALKVFSELKEK---GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 598

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ G C+   I +A++L   M +   +EPD V+Y+ +IDG+   ++ A A + F+EM +
Sbjct: 599 ALVDGLCKSGDIQRARKLFDGMPEKG-LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 657

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+ P    Y  L+         + A  +F EML+        +++N L++GYC+   ++
Sbjct: 658 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT--LSFNTLIDGYCKSCKIQ 715

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA ++ + M      P+  TY ++ +    A K  EA LL+KE++ER
Sbjct: 716 EASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 762



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 199/454 (43%), Gaps = 34/454 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P+V  +ST++   A+ G              ++  R+  D    S   PD   
Sbjct: 375 MTFSGLKPNVVVYSTLIMGYASEGR-------------IEEARRLLDGMSCSGVAPDIFC 421

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA+++  +  GK ++      ++   G KPD +T+   I   ++  +        + +L
Sbjct: 422 YNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 481

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+      +  L+  +   G+L  A +I + +      V   ++      +     G 
Sbjct: 482 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHA--LGVLPDVQTCSAFIHGLLKNGR 539

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  +VF +L         E  L+P  F      Y++L+ G+  +G V     +   M 
Sbjct: 540 VQEALKVFSEL--------KEKGLVPDVFT-----YSSLISGFCKQGEVEKAFELHDEMC 586

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+   Y  +V  L K+G + RAR++   M   G+  + +TY+ ++ GYC+  
Sbjct: 587 LK---GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 643

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            + +A  L  EM     ++P    YN L+ G     D   A+  F EM  +G A T +S+
Sbjct: 644 NVAEAFSLFHEMPSKG-VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT-LSF 701

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            TL+  +  S + + A+++F EM+   ++  D V +  +++ +C+ G +EEA  + + M+
Sbjct: 702 NTLIDGYCKSCKIQEASQLFQEMIA-KQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 760

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           E     +  TY SL  G +   +  E   L++++
Sbjct: 761 ERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 794



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/514 (23%), Positives = 216/514 (42%), Gaps = 84/514 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  Y  +        +  +    F++M + G KPD    + +I    R      ++ +
Sbjct: 207 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 266

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDL 170
            + ++  GI + + T+  L+     FG +E A  I++ M     +   R  C +I     
Sbjct: 267 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI----- 321

Query: 171 EDYSSE-NEGDDDDDDEVFEK--LLPNSI-------------NPSSEPPLLPK-TFA--- 210
           E Y  E N G   +  +  EK  L+P+++             + S    LL K TF+   
Sbjct: 322 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 381

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN  +Y+TL+ GY +EGR+ +  R+L  M     +   PD   Y  ++S L KAG M+ A
Sbjct: 382 PNVVVYSTLIMGYASEGRIEEARRLLDGMSC---SGVAPDIFCYNAIISCLSKAGKMEEA 438

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------- 316
              L E+   G+  + +T+   + GY +  ++ +A +   EM D                
Sbjct: 439 STYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLING 498

Query: 317 --------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                                + PDV + +  I G +       AL  F+E++ +G+ P 
Sbjct: 499 HFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPD 558

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +Y++L+  F    + + A ++ DEM     +  +I  +N LV+G C+ G ++ A+++ 
Sbjct: 559 VFTYSSLISGFCKQGEVEKAFELHDEMCLKG-IAPNIFIYNALVDGLCKSGDIQRARKLF 617

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           + M E G  P+  TY ++ +G   +    EA  L+ E+  +      GV          +
Sbjct: 618 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK------GV----------Q 661

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           P   + +AL   C +     KA+ +   M + G 
Sbjct: 662 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 695



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 139/304 (45%), Gaps = 23/304 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDR 269
           P+    + L+ G+M EG + + +R+   M     +   P + +TY  ++  L K G M++
Sbjct: 242 PDYNACSALIDGFMREGDIDEVLRIKDVMV----SCGIPINLITYNVLIHGLCKFGKMEK 297

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A ++L  M  +G   N  T+ +L++GYC++  + +A ELL EM +   + P  VSY  +I
Sbjct: 298 AAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM-EKRNLVPSAVSYGAMI 356

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G     D + A     +M   G+ P  + Y+TL+  +A   + + A ++ D M     V
Sbjct: 357 NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-SCSGV 415

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             DI  +N ++    + G +EEA   +  ++  G  P+  T+G+   G S   K  EA  
Sbjct: 416 APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 475

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            + E+                L   L P+  L   L +   +A    +AL I   +   G
Sbjct: 476 YFDEM----------------LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG 519

Query: 510 IPPN 513
           + P+
Sbjct: 520 VLPD 523



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 172/433 (39%), Gaps = 69/433 (15%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V  +S+++S     G+             V++  +  D   +    P+   YNA+
Sbjct: 554 GLVPDVFTYSSLISGFCKQGE-------------VEKAFELHDEMCLKGIAPNIFIYNAL 600

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G  ++  +LFD M E G +PD +TY+ MI    ++        +   +   G+
Sbjct: 601 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 660

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                 + +LV      GD+E A  + + M                              
Sbjct: 661 QPHSFVYNALVHGCCKEGDMEKAMNLFREM------------------------------ 690

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                               L K FA  +  + TL+ GY    ++ +  ++   M  ++ 
Sbjct: 691 --------------------LQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ- 728

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PDHVTYTTV+    KAG M+ A  +  EM    +  + +TY  L+ GY +  Q  +
Sbjct: 729 --IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSE 786

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
              L  +M     ++PD V+Y ++I      D+   A    +E+  +G+      +  L+
Sbjct: 787 VFALFEKMVAKG-VKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLI 845

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            A         A+K+ DEM  +  +K  + A + LV  +   G ++EA R+ E +K  G 
Sbjct: 846 TALCKREDLTEASKLLDEM-GELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGL 904

Query: 425 YPNVATYGSLANG 437
            P+  T   L NG
Sbjct: 905 VPDTTTLIDLVNG 917



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 180/435 (41%), Gaps = 56/435 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  ++N     G   + L +F  +H  G  PDV T +  I    +  R    + V
Sbjct: 487 PNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 546

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              + E G+   + T+ SL++ +   G++E A        E   ++C      ++  Y++
Sbjct: 547 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKA-------FELHDEMCLKGIAPNIFIYNA 599

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G     D    + L + + P        K   P+S  Y+T++ GY     V++   +
Sbjct: 600 LVDGLCKSGDIQRARKLFDGM-PE-------KGLEPDSVTYSTMIDGYCKSENVAEAFSL 651

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +      P    Y  +V    K G M++A  +  EM + G  A  +++N L+ G
Sbjct: 652 FHEMPSK---GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDG 707

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILID------------------------- 330
           YC+  +I +A +L +EM    +I PD V+Y  +ID                         
Sbjct: 708 YCKSCKIQEASQLFQEMIAK-QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 766

Query: 331 ----------GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
                     G+  +  S+     F +M A+G+ P +++Y  ++ A         A K+ 
Sbjct: 767 DTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLR 826

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           DE++    +    +  ++L+   C+   + EA ++++ M E G  P++A   +L      
Sbjct: 827 DEVVGKGMLTKGTI-HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHE 885

Query: 441 ARKPGEALLLWKEIK 455
           A K  EA  +++ +K
Sbjct: 886 AGKMDEATRVFEGVK 900



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 2/165 (1%)

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L  M   G+  N  TY I+  G C+  ++++AK    EM     ++PD  + + LIDGF+
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTG-LKPDYNACSALIDGFM 255

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
              D    L   + M + GI    I+Y  L+       + + A ++   M+     K + 
Sbjct: 256 REGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT-LGCKPNS 314

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
             + +L+EGYCR   +  A  +++ M++    P+  +YG++ NG+
Sbjct: 315 RTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGL 359



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 54/237 (22%)

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI-SYTTLMKAFALSSQPK 374
           +K+ PDV+   +  +    + D    L FF   +++   P  + S++ L      S    
Sbjct: 65  SKLNPDVIRAVLHQNQ---VGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFG 121

Query: 375 LANKVFDEMLRDPRVKVDI----------------VAWNMLVEGYCRMGLVEEAKRI--- 415
           LAN V  +M+R P     I                V +++L++ Y RMG+++EA  +   
Sbjct: 122 LANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFV 181

Query: 416 ---------------IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
                          +  M E G  PN  TY  +  G+  A++  EA L ++E+      
Sbjct: 182 AKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEM------ 235

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           +K G          LKPD     AL D  +R     + L I   M   GIP N   Y
Sbjct: 236 QKTG----------LKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITY 282



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 66/369 (17%), Positives = 136/369 (36%), Gaps = 76/369 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P++  ++ +V  L  SGD             ++R RK  D       +PD+  
Sbjct: 585 MCLKGIAPNIFIYNALVDGLCKSGD-------------IQRARKLFDGMPEKGLEPDSVT 631

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++         +   LF +M   G +P    YN ++  C +       + +   +L
Sbjct: 632 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 691

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--------------------REGRRD 160
           + G    ++ F +L+  Y     ++ A  + Q M                    + G+ +
Sbjct: 692 QKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 750

Query: 161 VCKII------RELDLED-------YSSENEGDDDDDDEVFEKLLPNSINP--------- 198
              ++      R L ++        Y     G   +   +FEK++   + P         
Sbjct: 751 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 810

Query: 199 --SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED--NASH------ 248
               +   L + F     +   + KG + +G + D   ++ A+ ++ED   AS       
Sbjct: 811 YAHCKEDNLVEAFKLRDEV---VGKGMLTKGTIHDL--LITALCKREDLTEASKLLDEMG 865

Query: 249 -----PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P     +T+V +  +AG MD A +V   +  +G+  +  T   L+ G       +
Sbjct: 866 ELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSE 925

Query: 304 KAKELLREM 312
            A+ L++++
Sbjct: 926 DARNLIKQL 934


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 173/385 (44%), Gaps = 24/385 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YNA+++     G+ +     F +M   G +PDV+TYN ++    +A      + +
Sbjct: 341 PTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLL 400

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELDLEDY 173
              +   G+   + T+  L+  Y   GDLE A  + + M E     DVC     +     
Sbjct: 401 FGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMK---- 456

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            S N        E F+++L   + P          FA N+RI   L  G + +      V
Sbjct: 457 GSHNACSLAMAREFFDEMLSKGLQPDC--------FAYNTRIRAELTLGAIAKAFRLREV 508

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ML  +          D VTY  ++  L K G+++ A+ +  +M   G+  + ITY  L+
Sbjct: 509 MMLEGISS--------DTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLI 560

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
             +C++  + +A++  ++M  D  + P  V+Y + I  +    +   A  +F +M   G+
Sbjct: 561 HAHCERGLLREARKFFKDMISDG-LAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGV 619

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P +I+Y  L+ A   + + +LA + F EML    V  +   + +L++G C+ G  E+A 
Sbjct: 620 EPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVP-NKYTYTLLIDGNCKEGNWEDAM 678

Query: 414 RIIERMKENGFYPNVATYGSLANGI 438
           R    M +NG +P+  T+ +L  G 
Sbjct: 679 RFYFEMHQNGIHPDYLTHKALFKGF 703



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 4/227 (1%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y TL+  ++ EGR +D V ML        +   P+ VT+  V++ L + G ++ A
Sbjct: 235 PSIVTYNTLLDSFLKEGR-NDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEA 293

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++  M R+   A+  TYN L+ G   +  + KA +L  EM ++  I P VV+YN +I 
Sbjct: 294 AEMVEGM-RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEG-IMPTVVTYNAMIH 351

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G +       A   F EMRA G+ P  I+Y +L+  +  +   K A  +F + LR   + 
Sbjct: 352 GLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGD-LRHAGLA 410

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
             ++ +N+L++GYCR+G +EEA+R+ E M E G  P+V TY  L  G
Sbjct: 411 PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKG 457



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 187/419 (44%), Gaps = 54/419 (12%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           K+S      D+ PDT         C+ L      L  F +M   G  PDV   N ++++ 
Sbjct: 167 KYSKECTDRDATPDT---------CSTL-----CLSAFHEMASHGVAPDVKDCNRVLRVL 212

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC- 162
           + A+R   +  V   +L++GI   + T+ +L+ +++  G  +    +++ M E R   C 
Sbjct: 213 SDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEM-ETRGSGCL 271

Query: 163 -----------KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA- 210
                       + R+ DLE+ +   EG       + +K    + NP     LL K F  
Sbjct: 272 PNDVTHNVVITGLARKGDLEEAAEMVEGM-----RLSKKASSFTYNPLITG-LLAKGFVK 325

Query: 211 ---------------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                          P    Y  ++ G +  G+V         MR        PD +TY 
Sbjct: 326 KADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAM---GLQPDVITYN 382

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           ++++   KAGS+  A  +  ++   G+    +TYNIL+ GYC+   +++A+ L  EM + 
Sbjct: 383 SLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQ 442

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + PDV +Y IL+ G       A A  FF+EM ++G+ P   +Y T ++A         
Sbjct: 443 GCL-PDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAK 501

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           A ++ + M+ +  +  D V +N+L++G C+ G + +AK +  +M  NG  P+  TY  L
Sbjct: 502 AFRLREVMMLE-GISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCL 559



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 113/538 (21%), Positives = 200/538 (37%), Gaps = 82/538 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N VL   ++  +      +  +M + G +P ++TYN ++    +  R   +  +
Sbjct: 200 PDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAML 259

Query: 116 LERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC---------- 162
           L+ +   G + C+    T   ++      GDLE A  +V+ MR  ++             
Sbjct: 260 LKEMETRG-SGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGL 318

Query: 163 ---KIIRELDLEDYSSENEG---DDDDDDEVFEKLLPNSINPSSEPPLL---PKTFAPNS 213
                +++ D      ENEG        + +   LL +    +++   +        P+ 
Sbjct: 319 LAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDV 378

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y +L+ GY   G + + + + G +R        P  +TY  ++    + G ++ AR++
Sbjct: 379 ITYNSLLNGYCKAGSLKEALLLFGDLRHA---GLAPTVLTYNILIDGYCRLGDLEEARRL 435

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA----------------- 316
             EM   G   +  TY IL+KG      +  A+E   EM                     
Sbjct: 436 KEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELT 495

Query: 317 -----------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
                             I  D V+YNILIDG     +   A     +M   G+ P  I+
Sbjct: 496 LGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCIT 555

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT L+ A       + A K F +M+ D  +    V + + +  YCR G +  A     +M
Sbjct: 556 YTCLIHAHCERGLLREARKFFKDMISDG-LAPSAVTYTVFIHAYCRRGNLYSAYGWFRKM 614

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
            E G  PN  TY  L + +    + G   L ++   E  E               L P++
Sbjct: 615 LEEGVEPNEITYNVLIHALC---RTGRTQLAYRHFHEMLERG-------------LVPNK 658

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQA 537
                L D   +   +  A+     M ++GI P+   +K ++     + F   H + A
Sbjct: 659 YTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALF-----KGFDEGHMNHA 711



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 3/222 (1%)

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L A      +   PD      V+  L  A   D    V AEM ++G+  + +TYN LL  
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 296 YCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           + ++ + DK   LL+EM    +   P+ V++N++I G     D   A      MR    A
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKA 306

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            +  +Y  L+         K A+ +  EM  +  +   +V +N ++ G  + G VE A+ 
Sbjct: 307 -SSFTYNPLITGLLAKGFVKKADDLQLEM-ENEGIMPTVVTYNAMIHGLLQSGQVEAAQV 364

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
               M+  G  P+V TY SL NG   A    EALLL+ +++ 
Sbjct: 365 KFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRH 406


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 214/506 (42%), Gaps = 71/506 (14%)

Query: 11  KAWSTVVSRLAASGDDGPVESVKLFDVVVK---------RVRKFSDPDIVSDSKPDTAAY 61
           K W  V S  A     G   +++ ++V++K         + R F D       KPD  +Y
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSY 187

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           + V+N  A  GK    L+LFD+M E G  PDV  YN++I    +       + + +R+LE
Sbjct: 188 STVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE 247

Query: 122 ---------------MGITLC---------------------MTTFQSLVAAYVGFGDLE 145
                           G++ C                     + T+ SL+      G+++
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVD 307

Query: 146 IAETIVQAMREGRRDV--------------CKIIRELDLEDY---SSENEGDDDDDDEVF 188
            AE++   + E +  +              C  I+E  LE +     +N  +    + + 
Sbjct: 308 KAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKE-SLELWRIMEHKNSVNIVSYNILI 366

Query: 189 EKLLPNS-INPSSEP-PLLP-KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           + LL N  I+ ++    L+P K +A +   Y   + G    G V+   + LG M+  E +
Sbjct: 367 KGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVN---KALGVMQEVESS 423

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
             H D   Y +++  L K   ++ A  ++ EM++ GV  N    N L+ G  +  ++ +A
Sbjct: 424 GGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEA 483

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
              LREM  +    P VVSYNILI G         A  F  EM   G  P   +Y+ L+ 
Sbjct: 484 SFFLREMGKNG-CRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLC 542

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                 +  LA +++ + L+   ++ D++  N+L+ G C +G +++A  ++  M+     
Sbjct: 543 GLCRDRKIDLALELWHQFLQSG-LETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCT 601

Query: 426 PNVATYGSLANGISLARKPGEALLLW 451
            N+ TY +L  G         A ++W
Sbjct: 602 ANLVTYNTLMEGFFKVGDSNRATVIW 627



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 189/454 (41%), Gaps = 61/454 (13%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           V KR+R+      +   +P   +YN +LNA     +  K   LF      G  P++ TYN
Sbjct: 100 VFKRMRE------IFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
           V+IK+  +          L+ + + G    + ++ +++      G L+ A  +   M E 
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSE- 212

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
            R V   +   ++       E D     E++++LL +S            +  PN + + 
Sbjct: 213 -RGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDS------------SVYPNVKTHN 259

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            ++ G    GRV D +++     R + N    D  TY++++  L  AG++D+A  V  E+
Sbjct: 260 IMISGLSKCGRVDDCLKI---WERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNEL 316

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
                  + +TYN +L G+C+  +I ++ EL R M  + K   ++VSYNILI G +    
Sbjct: 317 DERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM--EHKNSVNIVSYNILIKGLLENGK 374

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   +  M A+G A  K +Y   +    ++     A  V  E +      +D+ A+ 
Sbjct: 375 IDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQE-VESSGGHLDVYAYA 433

Query: 398 MLVEGYCRMGLVEEAKRIIERMKE-----------------------------------N 422
            +++  C+   +EEA  +++ M +                                   N
Sbjct: 434 SIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKN 493

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           G  P V +Y  L  G+  A K GEA    KE+ E
Sbjct: 494 GCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE 527



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R +E     P   +Y T+++A V+A    +   + A     GV  N  TYN+L+K  C++
Sbjct: 103 RMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKK 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            + +KA+  L  M  +   +PDV SY+ +I+          AL  F+EM  RG+AP    
Sbjct: 163 KEFEKARGFLDWMWKEG-FKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTC 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+  F      K A +++D +L D  V  ++   N+++ G  + G V++  +I ERM
Sbjct: 222 YNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           K+N    ++ TY SL +G+  A    +A  ++ E+ ER
Sbjct: 282 KQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDER 319



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 194/460 (42%), Gaps = 49/460 (10%)

Query: 4   SGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           S   P+VK  + ++S L+  G  DD     +K+++    R+++       ++ + D   Y
Sbjct: 249 SSVYPNVKTHNIMISGLSKCGRVDD----CLKIWE----RMKQ-------NEREKDLYTY 293

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERIL 120
           +++++   + G   K   +F+++ E  A  DV+TYN M+   C     K  L   L RI+
Sbjct: 294 SSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLE--LWRIM 351

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDLEDYSS 175
           E   ++ + ++  L+   +  G ++ A  I + M        +      I  L +  Y +
Sbjct: 352 EHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVN 411

Query: 176 ---------ENEGDDDD--------DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                    E+ G   D        D    +K L  + N   E  +       NS +   
Sbjct: 412 KALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKE--MSKHGVELNSHVCNA 469

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G + + R+ +    L   R    N   P  V+Y  ++  L KAG    A   + EM 
Sbjct: 470 LIGGLIRDSRLGEASFFL---REMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G   +  TY+ILL G C+  +ID A EL  +      +E DV+ +NILI G   +   
Sbjct: 527 ENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSG-LETDVMMHNILIHGLCSVGKL 585

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A+T    M  R      ++Y TLM+ F        A  ++  M +   ++ DI+++N 
Sbjct: 586 DDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYK-MGLQPDIISYNT 644

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +++G C    V  A    +  + +G +P V T+  L   +
Sbjct: 645 IMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAV 684



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 85/195 (43%), Gaps = 12/195 (6%)

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++K Y +    D+A ++ + M +    EP + SYN L++ F+         + F      
Sbjct: 84  VIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETA 143

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+AP   +Y  L+K      + + A    D M ++   K D+ +++ ++    + G +++
Sbjct: 144 GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEG-FKPDVFSYSTVINDLAKAGKLDD 202

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A  + + M E G  P+V  Y  L +G    +    A+ LW  + E           DS +
Sbjct: 203 ALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE-----------DSSV 251

Query: 472 PPPLKPDEELLDALA 486
            P +K    ++  L+
Sbjct: 252 YPNVKTHNIMISGLS 266


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 189/407 (46%), Gaps = 23/407 (5%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  KP+   Y+ ++   A+ G+ ++  +L D M   G  PD+  YN +I   ++A +   
Sbjct: 179 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 238

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDL 170
               L  I   G+     TF + +  Y   G + E A+   + +  G      +   L  
Sbjct: 239 ASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 298

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             + +   G+  +   +F  L    +              P+ +  +  + G +  GRV 
Sbjct: 299 GHFKA---GNLMEALSIFRHLHALGV-------------LPDVQTCSAFIHGLLKNGRVQ 342

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +++   ++ +      PD  TY++++S   K G +++A ++  EM   G+  N   YN
Sbjct: 343 EALKVFSELKEK---GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 399

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ G C+   I +A++L   M +   +EPD V+Y+ +IDG+   ++ A A + F+EM +
Sbjct: 400 ALVDGLCKSGDIQRARKLFDGMPEKG-LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 458

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+ P    Y  L+         + A  +F EML+        +++N L++GYC+   ++
Sbjct: 459 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT--LSFNTLIDGYCKSCKIQ 516

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA ++ + M      P+  TY ++ +    A K  EA LL+KE++ER
Sbjct: 517 EASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 563



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 215/514 (41%), Gaps = 84/514 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  Y  +        +  +    F++M + G KPD    + +I    R      ++ +
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDL 170
            + ++  GI + + T+  L+     FG +E A  I++ M     +   R  C +I     
Sbjct: 68  KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI----- 122

Query: 171 EDYSSE-NEGDDDDDDEVFEK--LLPNSI-------------NPSSEPPLLPK-TFA--- 210
           E Y  E N G   +  +  EK  L+P+++             + S    LL K TF+   
Sbjct: 123 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 182

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN  +Y+TL+ GY +EGR+ +  R+L  M     +   PD   Y  ++S L KAG M+ A
Sbjct: 183 PNVVVYSTLIMGYASEGRIEEARRLLDGMSC---SGVAPDIFCYNAIISCLSKAGKMEEA 239

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------- 316
              L E+   G+  + +T+   + GY +  ++ +A +   EM D                
Sbjct: 240 STYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLING 299

Query: 317 --------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                                + PDV + +  I G +       AL  F+E++ +G+ P 
Sbjct: 300 HFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPD 359

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +Y++L+  F    + + A ++ DEM     +  +I  +N LV+G C+ G ++ A+++ 
Sbjct: 360 VFTYSSLISGFCKQGEVEKAFELHDEMCLKG-IAPNIFIYNALVDGLCKSGDIQRARKLF 418

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           + M E G  P+  TY ++ +G   +    EA  L+ E+  +                 ++
Sbjct: 419 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK----------------GVQ 462

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           P   + +AL   C +     KA+ +   M + G 
Sbjct: 463 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 496



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 139/304 (45%), Gaps = 23/304 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDR 269
           P+    + L+ G+M EG + + +R+   M     +   P + +TY  ++  L K G M++
Sbjct: 43  PDYNACSALIDGFMREGDIDEVLRIKDVMV----SCGIPINLITYNVLIHGLCKFGKMEK 98

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A ++L  M  +G   N  T+ +L++GYC++  + +A ELL EM +   + P  VSY  +I
Sbjct: 99  AAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM-EKRNLVPSAVSYGAMI 157

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G     D + A     +M   G+ P  + Y+TL+  +A   + + A ++ D M     V
Sbjct: 158 NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-SCSGV 216

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             DI  +N ++    + G +EEA   +  ++  G  P+  T+G+   G S   K  EA  
Sbjct: 217 APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 276

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            + E+                L   L P+  L   L +   +A    +AL I   +   G
Sbjct: 277 YFDEM----------------LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG 320

Query: 510 IPPN 513
           + P+
Sbjct: 321 VLPD 324



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 122/536 (22%), Positives = 210/536 (39%), Gaps = 109/536 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P+V  +ST++   A+ G              ++  R+  D    S   PD   
Sbjct: 176 MTFSGLKPNVVVYSTLIMGYASEGR-------------IEEARRLLDGMSCSGVAPDIFC 222

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA+++  +  GK ++      ++   G KPD +T+   I   ++  +        + +L
Sbjct: 223 YNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 282

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETI------------VQA--------MREGR-R 159
           + G+      +  L+  +   G+L  A +I            VQ         ++ GR +
Sbjct: 283 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQ 342

Query: 160 DVCKIIREL-------DLEDYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
           +  K+  EL       D+  YSS   G     + ++ FE              +  K  A
Sbjct: 343 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE----------LHDEMCLKGIA 392

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN  IY  L+ G    G +    ++   M    +    PD VTY+T++    K+ ++  A
Sbjct: 393 PNIFIYNALVDGLCKSGDIQRARKLFDGM---PEKGLEPDSVTYSTMIDGYCKSENVAEA 449

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +  EM   GV  +   YN L+ G C++  ++KA  L REM    K     +S+N LID
Sbjct: 450 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQ--KGFATTLSFNTLID 507

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------- 383
           G+        A   F EM A+ I P  ++YTT++     + + + AN +F EM       
Sbjct: 508 GYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 567

Query: 384 ---------LRDPRVKVDIVAWNMLVEGYCRM-GLVE----------------------- 410
                    +    VK D V + +++  +C+   LVE                       
Sbjct: 568 DTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLL 627

Query: 411 -----------EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
                      EA ++++ M E G  P++A   +L      A K  EA  +++ +K
Sbjct: 628 ITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVK 683



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 184/448 (41%), Gaps = 77/448 (17%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           K+ D  +     P+   Y  ++N     G   + L +F  +H  G  PDV T +  I   
Sbjct: 276 KYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGL 335

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
            +  R    + V   + E G+   + T+ SL++ +   G++E A        E   ++C 
Sbjct: 336 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKA-------FELHDEMCL 388

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
                ++  Y++  +G     D    + L + + P        K   P+S  Y+T++ GY
Sbjct: 389 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM-PE-------KGLEPDSVTYSTMIDGY 440

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
                V++   +   M  +      P    Y  +V    K G M++A  +  EM + G  
Sbjct: 441 CKSENVAEAFSLFHEMPSK---GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF- 496

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---------- 333
           A  +++N L+ GYC+  +I +A +L +EM    +I PD V+Y  +ID             
Sbjct: 497 ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAK-QIMPDHVTYTTVIDWHCKAGKMEEANL 555

Query: 334 ---------LIDDSAGALTFFNEMRARGIAPTKISYT----------TLMKAF------- 367
                    LI D+  AL  F +M A+G+ P +++Y            L++AF       
Sbjct: 556 LFKEMQERNLIVDTVFAL--FEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVV 613

Query: 368 ----------------ALSSQPKL--ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
                           AL  +  L  A+K+ DEM  +  +K  + A + LV  +   G +
Sbjct: 614 GKGMLTKGTIHDLLITALCKREDLTEASKLLDEM-GELGLKPSLAACSTLVRSFHEAGKM 672

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANG 437
           +EA R+ E +K  G  P+  T   L NG
Sbjct: 673 DEATRVFEGVKSLGLVPDTTTLIDLVNG 700



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  N  TY I+  G C+  ++++AK    EM     ++PD  + + LIDGF+   
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTG-LKPDYNACSALIDGFMREG 59

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           D    L   + M + GI    I+Y  L+       + + A ++   M+     K +   +
Sbjct: 60  DIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT-LGCKPNSRTF 118

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            +L+EGYCR   +  A  +++ M++    P+  +YG++ NG+   +
Sbjct: 119 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCK 164



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 17/170 (10%)

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +G+ P   +YT +      + +   A   F+EM +   +K D  A + L++G+ R G
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEM-QKTGLKPDYNACSALIDGFMREG 59

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            ++E  RI + M   G   N+ TY  L +G          L  + ++++  E+ K  +  
Sbjct: 60  DIDEVLRIKDVMVSCGIPINLITYNVLIHG----------LCKFGKMEKAAEILKGMITL 109

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                   KP+      L +   R     +ALE++  ME+  + P+   Y
Sbjct: 110 GC------KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 153


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 210/502 (41%), Gaps = 77/502 (15%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+  DGP  +V LF+ +    R+ + P +   + P    YN +++ C    +P     L
Sbjct: 88  SAACRDGPSLAVALFNRIC---REEARPRV---ALPTVCTYNILMDCCCRTRRPTVGFAL 141

Query: 81  FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV-FVLERILEMGITLCMTTFQSLVAAYV 139
           F +  + G K DV+  ++++K    A R   +V  +L R+ E+G+     ++        
Sbjct: 142 FGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYN------- 194

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
                    T+V+ + E  R      R LDL     +  G                    
Sbjct: 195 ---------TVVKTLCEDSRSQ----RALDLLHTMVKKSGG------------------- 222

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                     +PN   Y T++ G   EG VS    +   M +Q      PD VTYT+++ 
Sbjct: 223 ---------CSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQ---GVVPDVVTYTSIID 270

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           AL KA +MD+A  VL +M   G   N++TYN ++ GY    Q  +   + REM     + 
Sbjct: 271 ALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQG-LM 329

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P++V+ N  +        S  A  FF+ M A+G  P  ++Y+ L+  +A          +
Sbjct: 330 PNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNL 389

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F+ M     +  D   +N++++ Y + G+++E   I  +M+E G  P+  TYG +    S
Sbjct: 390 FNSM-EGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFS 448

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
              +  +A+  + ++                +   LKP+  +  +L           KA 
Sbjct: 449 RMGRLADAMDKFNQM----------------IAMGLKPEGIVYHSLIQGFCMHGNLVKAK 492

Query: 500 EIVACMEEHGIP-PNKTKYKKI 520
           E+V+ M   GIP PN   +  I
Sbjct: 493 ELVSEMMSRGIPRPNIVFFNSI 514



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 203/459 (44%), Gaps = 42/459 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G+ P+   ++ ++   + SG     E+  +F       R+ +   ++    P+   
Sbjct: 288 MISNGFQPNKVTYNCMIHGYSISGQ--WKETAGMF-------REMTSQGLM----PNIVT 334

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N+ +++    GK K+  + FD M   G KP+++TY+V++   A       ++ +   + 
Sbjct: 335 CNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSME 394

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSENE 178
             GI      F  ++ AY   G ++    I   M+E     D C     + +  +S    
Sbjct: 395 GNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTY--GIVIAAFSRMGR 452

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
             D  D   F +++   + P                +Y +L++G+   G +     ++  
Sbjct: 453 LADAMDK--FNQMIAMGLKPEG-------------IVYHSLIQGFCMHGNLVKAKELVSE 497

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      P+ V + +++++L K G +  A  +   +  IG   + IT+N L+ GY  
Sbjct: 498 MMSR--GIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGL 555

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAP 355
             +I+KA  +L  M   A IEPDVVSYN LIDG+     IDD    L  F EM ++G+ P
Sbjct: 556 VGKIEKAFGVLDAMIS-AGIEPDVVSYNTLIDGYCRNGRIDD---GLILFGEMLSKGVKP 611

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T I+Y  ++       +   A K+  EM+ +    +DI    +++ G CR    +EA  +
Sbjct: 612 TTITYGIILHGLFNDGRTVGAKKMCHEMI-ESGTTMDISTCGIILGGLCRNNCDDEAIAM 670

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++       N+A   ++ + +   RK  EA  L+  I
Sbjct: 671 FKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSI 709



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 112/441 (25%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRV--RKF 45
           M   G+ P++  +S ++   A  G              +G V   ++F++V+     R  
Sbjct: 358 MAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGM 417

Query: 46  SDPDIVSDSK-------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            D  ++  ++       PD   Y  V+ A + +G+    +  F+QM   G KP+ + Y+ 
Sbjct: 418 MDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHS 477

Query: 99  MIK-LCARAS-----------------RKHLLVF------------------VLERILEM 122
           +I+  C   +                 R +++ F                  + + ++ +
Sbjct: 478 LIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHI 537

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G    + TF SL+  Y   G +E A  ++ AM                            
Sbjct: 538 GERPDVITFNSLIDGYGLVGKIEKAFGVLDAM---------------------------- 569

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                        I+   EP ++          Y TL+ GY   GR+ D + + G M  +
Sbjct: 570 -------------ISAGIEPDVVS---------YNTLIDGYCRNGRIDDGLILFGEMLSK 607

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 P  +TY  ++  L   G    A+++  EM   G   +  T  I+L G C+    
Sbjct: 608 ---GVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCD 664

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D+A  + +++     ++ ++   N +ID    +     A   F+ + A G+ P   +Y  
Sbjct: 665 DEAIAMFKKLG-AMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGV 723

Query: 363 LMKAFALSSQPKLANKVFDEM 383
           ++K        + A+ +F  M
Sbjct: 724 MIKNLLKEGSVEEADNMFSLM 744


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 209/460 (45%), Gaps = 41/460 (8%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++N     GKP++   +F+ + E G +P  +TY  ++    R  R   +  +L  + E G
Sbjct: 63  LMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETG 122

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGDDD 182
           I        +++ A+   G+++ A  I Q M E G +        L ++ Y     G   
Sbjct: 123 IKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTL-IKGY-----GIIR 176

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKT--FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +E   KLL           L+ +T    PN+R Y  L+     +  + +   ++  M 
Sbjct: 177 KPEESM-KLLE----------LMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQML 225

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               +   PD VTY T+  A  + G  ++A  ++ +M    V  N  T  I++ GYC+Q 
Sbjct: 226 ---ASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQG 282

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            + +A  ++  M  D  I P++V +N LI GF+ I DS G       M   G+ P  I++
Sbjct: 283 NLAEALRVVYRM-RDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITF 341

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           +T+M  ++ + +     ++FD+ML+   ++ DI  +++L +G+ R G   +A+ ++  M 
Sbjct: 342 STIMNGWSSAGRMDKCQEIFDDMLKSG-IEPDIHVFSILAKGFVRAGEPVKAESLLNFMS 400

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  PNV  + ++ +G   A K  +A   WK  +  C         D D+ P LK  E 
Sbjct: 401 KYGVRPNVVIFTTIISGWCTAGKMEKA---WKVFEHMC---------DMDVSPNLKTFET 448

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L+    +    A    +A EI+  MEE  + P  +  K +
Sbjct: 449 LIWGYGE----AKQPWRAEEILQMMEEMNVVPENSTLKLV 484



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 171/379 (45%), Gaps = 25/379 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK---LCARASRKHL 111
           KPD+   NA++NA +  G  K+ +++F +M E G KP   T+N +IK   +  +      
Sbjct: 124 KPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMK 183

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           L+ ++ R   +       T+  LV A      ++ A  +V  M         +       
Sbjct: 184 LLELMTRTTNLKPN--NRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLAR 241

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y+   +G+ +  + +   +L   +N             PN R    ++ GY  +G +++
Sbjct: 242 AYA--QDGETNKAESIIVDMLNKKVN-------------PNERTCGIIVGGYCEQGNLAE 286

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            +R++  MR   D   HP+ V + +++   +  G  D   + L  M   GV  + IT++ 
Sbjct: 287 ALRVVYRMR---DLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFST 343

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++ G+    ++DK +E+  +M     IEPD+  ++IL  GF+   +   A +  N M   
Sbjct: 344 IMNGWSSAGRMDKCQEIFDDMLKSG-IEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKY 402

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P  + +TT++  +  + + + A KVF+ M  D  V  ++  +  L+ GY        
Sbjct: 403 GVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMC-DMDVSPNLKTFETLIWGYGEAKQPWR 461

Query: 412 AKRIIERMKENGFYPNVAT 430
           A+ I++ M+E    P  +T
Sbjct: 462 AEEILQMMEEMNVVPENST 480



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 134/306 (43%), Gaps = 24/306 (7%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASR 108
           + S  +PD   YN +  A A  G+  K   +   M      P+  T  +++   C + + 
Sbjct: 225 LASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNL 284

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
              L  V+ R+ ++GI   +  F SL+  ++  GD +  +  +  M E       I    
Sbjct: 285 AEAL-RVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFST 343

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
            +  +SS   G  D   E+F+ +L + I              P+  +++ L KG++  G 
Sbjct: 344 IMNGWSS--AGRMDKCQEIFDDMLKSGIE-------------PDIHVFSILAKGFVRAGE 388

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
                 +L  M +       P+ V +TT++S    AG M++A +V   M  + V  N  T
Sbjct: 389 PVKAESLLNFMSKY---GVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKT 445

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF---ILIDDSAGALTFF 345
           +  L+ GY +  Q  +A+E+L +M ++  + P+  +  ++ + +    +++D+    T  
Sbjct: 446 FETLIWGYGEAKQPWRAEEIL-QMMEEMNVVPENSTLKLVSEAWRSIGMVNDAKAERTEE 504

Query: 346 NEMRAR 351
           NE+  R
Sbjct: 505 NEIPWR 510



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P V  +ST+++  +++G     +  ++FD ++K           S  +PD   
Sbjct: 329 MEESGVKPDVITFSTIMNGWSSAGRMDKCQ--EIFDDMLK-----------SGIEPDIHV 375

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++ +       G+P K   L + M ++G +P+V+ +  +I     A +      V E + 
Sbjct: 376 FSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMC 435

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           +M ++  + TF++L+  Y        AE I+Q M E
Sbjct: 436 DMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEE 471



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 25  DDGPVESVKLFDVVVKRVRKFSDPDIV---------SDSKPDTAAYNAVLNACANLGKPK 75
           D G   ++ +F+ ++K      D D V         S  KPD   ++ ++N  ++ G+  
Sbjct: 296 DLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMD 355

Query: 76  KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           K  ++FD M + G +PD+  ++++ K   RA        +L  + + G+   +  F +++
Sbjct: 356 KCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTII 415

Query: 136 AAYVGFGDLEIAETIVQAM 154
           + +   G +E A  + + M
Sbjct: 416 SGWCTAGKMEKAWKVFEHM 434


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 190/433 (43%), Gaps = 58/433 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P   AYN VL     + + K   +LFD+M +    P+ +TYN +I   C     +  L F
Sbjct: 190 PSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGF 249

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             ER+ E  +   + T+ SL+    G G ++ A  ++  M EG   +         +D+S
Sbjct: 250 K-ERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEM-EGSGFLPGGFLSFVFDDHS 307

Query: 175 SENEGDD----------------------------DDDDEVFEKLLPNSINPSSEPPLLP 206
           +   GDD                            +  +EV  KL+ N + PS       
Sbjct: 308 N-GAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKIS---- 362

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
                    Y  L+  Y  EG   D  + +    + E+    P+ +T+ TV+S   + G 
Sbjct: 363 ---------YNILVNAYCQEG---DVKKAILTTEQMEERGLEPNRITFNTVISKFCETGE 410

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A   +  M   GV     TYN L+ GY Q+    +  E L EM D A I+P+V+SY 
Sbjct: 411 VDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEM-DKAGIKPNVISYG 469

Query: 327 ILIDGFI----LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
            LI+       LID    A     +M  RG++P    Y  L++A    S+ K A + FDE
Sbjct: 470 SLINCLCKDRKLID----AEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDE 525

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M++   +   +V +N L+ G  R G V++A+ +  +M   G  P+V TY SL +G + + 
Sbjct: 526 MIQSG-IDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSV 584

Query: 443 KPGEALLLWKEIK 455
              + L L+ ++K
Sbjct: 585 NTQKCLELYDKMK 597



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 184/409 (44%), Gaps = 35/409 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P   +YN ++NA    G  KK +   +QM E G +P+ +T+N +I K C      H   +
Sbjct: 358 PSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETW 417

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGD-LEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           V  R++E G++  + T+ SL+  Y   G  +   E + +  + G +    +I    L + 
Sbjct: 418 V-RRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKP--NVISYGSLINC 474

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             ++            KL+   I  +    ++ +  +PN+ IY  L++   +  ++ D  
Sbjct: 475 LCKDR-----------KLIDAEIVLAD---MIGRGVSPNAEIYNMLIEASCSLSKLKDAF 520

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R    M +   +A+    VTY T+++ L + G + +A  +  +M   G   + ITYN L+
Sbjct: 521 RFFDEMIQSGIDATL---VTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLI 577

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI-----DGFILIDDSAGALTFFNEM 348
            GY + +   K  EL  +M     I+P V +++ LI     +G + +D        F EM
Sbjct: 578 SGYAKSVNTQKCLELYDKMKI-LGIKPTVGTFHPLIYACRKEGVVTMD------KMFQEM 630

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
               + P +  Y  ++ ++A       A  +  +M+ D  V  D V +N L+  Y R   
Sbjct: 631 LQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMV-DQGVDCDKVTYNSLILAYLRDRR 689

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           V E K +++ MK  G  P V TY  L  G+   +    A   ++E+ ER
Sbjct: 690 VSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVER 738



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 111/493 (22%), Positives = 197/493 (39%), Gaps = 99/493 (20%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T + N +L    +    +K L +F  + + G +PD + Y            K +   V
Sbjct: 120 PSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYG-----------KAVQAAV 168

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           + + L+ G  L     +S+V    G G    A  +V         +CK+ R  D      
Sbjct: 169 MLKDLDKGFEL----MKSMVKD--GMGPSVFAYNLVLG------GLCKVRRIKDARKLFD 216

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E                           ++ +   PN+  Y TL+ GY   G + +    
Sbjct: 217 E---------------------------MIQRNMVPNTVTYNTLIDGYCKVGGIEEA--- 246

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG-VPANRI------- 287
           LG   R ++     + VTY ++++ L  +G +D AR+VL EM   G +P   +       
Sbjct: 247 LGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDH 306

Query: 288 --------------------TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
                               TY ILL G C+  +I+KA+E+L ++ ++  + P  +SYNI
Sbjct: 307 SNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENG-VTPSKISYNI 365

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L++ +    D   A+    +M  RG+ P +I++ T++  F  + +   A      M+ + 
Sbjct: 366 LVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMV-EK 424

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            V   +  +N L+ GY + G        ++ M + G  PNV +YGSL N +   RK  +A
Sbjct: 425 GVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDA 484

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
            ++  ++  R      GV+          P+ E+ + L +     +  + A      M +
Sbjct: 485 EIVLADMIGR------GVS----------PNAEIYNMLIEASCSLSKLKDAFRFFDEMIQ 528

Query: 508 HGIPPNKTKYKKI 520
            GI      Y  +
Sbjct: 529 SGIDATLVTYNTL 541



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 157/359 (43%), Gaps = 52/359 (14%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P++R    L++  ++      T+ +   +    D+ + PD V Y   V A V    +D
Sbjct: 118 FVPSTRSVNRLLRTLVDSRHFEKTLAVFADVI---DSGTRPDAVAYGKAVQAAVMLKDLD 174

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +  +++  M + G+  +   YN++L G C+  +I  A++L  EM     + P+ V+YN L
Sbjct: 175 KGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMV-PNTVTYNTL 233

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM----- 383
           IDG+  +     AL F   M+ + +    ++Y +L+     S +   A +V  EM     
Sbjct: 234 IDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGF 293

Query: 384 ---------------------LRDPR-VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
                                L D + +++D   + +L+ G CR+G +E+A+ ++ ++ E
Sbjct: 294 LPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVE 353

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CEVKKEGV 465
           NG  P+  +Y  L N         +A+L  ++++ER                CE   E  
Sbjct: 354 NGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCET-GEVD 412

Query: 466 NADS----DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +A++     +   + P  E  ++L +   +   F +  E +  M++ GI PN   Y  +
Sbjct: 413 HAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSL 471



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 16/264 (6%)

Query: 267 MDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           +D A  + + M + G VP+ R + N LL+        +K   +  ++ D     PD V+Y
Sbjct: 103 LDEATDLYSTMRKDGFVPSTR-SVNRLLRTLVDSRHFEKTLAVFADVIDSGT-RPDAVAY 160

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
              +   +++ D          M   G+ P+  +Y  ++       + K A K+FDEM++
Sbjct: 161 GKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQ 220

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS------ 439
              V  + V +N L++GYC++G +EEA    ERMKE     N+ TY SL NG+       
Sbjct: 221 RNMVP-NTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVD 279

Query: 440 -----LARKPGEALLLWKEIKERCEVKKEGVNADSDL-PPPLKPDEELLDALADICVRAA 493
                L    G   L    +    +    G   D       ++ DE     L +   R  
Sbjct: 280 DAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVG 339

Query: 494 FFRKALEIVACMEEHGIPPNKTKY 517
              KA E++A + E+G+ P+K  Y
Sbjct: 340 RIEKAEEVLAKLVENGVTPSKISY 363



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 152/374 (40%), Gaps = 40/374 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+   ++TV+S+   +G+    E+          VR+  +  +     P    
Sbjct: 386 MEERGLEPNRITFNTVISKFCETGEVDHAET---------WVRRMVEKGV----SPTVET 432

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV-FVLERI 119
           YN+++N     G   +  +  D+M + G KP+V++Y  +I  C    RK +    VL  +
Sbjct: 433 YNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLIN-CLCKDRKLIDAEIVLADM 491

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII------------RE 167
           +  G++     +  L+ A      L+ A      M +   D   +             R 
Sbjct: 492 IGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRV 551

Query: 168 LDLEDYSSENEGDDDDDDEV-FEKLLPN---SINPSSEPPLLPKT----FAPNSRIYTTL 219
              ED   +  G   + D + +  L+     S+N      L  K       P    +  L
Sbjct: 552 KKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPL 611

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +     EG V+   +M   M + +     PD   Y  ++ +  + G++ +A  +  +M  
Sbjct: 612 IYACRKEGVVT-MDKMFQEMLQMD---LVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVD 667

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            GV  +++TYN L+  Y +  ++ + K L+ +M     + P V +YNILI G   + D  
Sbjct: 668 QGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLV-PKVDTYNILIKGLCDLKDFN 726

Query: 340 GALTFFNEMRARGI 353
           GA  ++ EM  RG+
Sbjct: 727 GAYFWYREMVERGL 740


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 131/561 (23%), Positives = 225/561 (40%), Gaps = 95/561 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P +K ++ V+  L+ +G              V+  R+     + +  +PD   
Sbjct: 137 MVEKGNSPTLKTYTVVIDGLSKAGR-------------VEEARRIFVDMLGNGCRPDAFV 183

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGA----KPDVLTYNVMIK-LCARASRKHLLVFV 115
           Y A+++  A +GK  + L   +QM E G     +PDV+ +N++I+ LCA  + +  L + 
Sbjct: 184 YTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYF 243

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E  L+  + L   TF  LVAA       E A   V+ M E R                 
Sbjct: 244 DE--LDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERR----------------- 284

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                         P  F      YT+L+ G++  GR+ + +  
Sbjct: 285 ----------------------------CFPTLFT-----YTSLVDGFLKLGRLDEALLQ 311

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   +   +    PD VTYT+++  L K G ++   +   EM   G   + +TY  L+ G
Sbjct: 312 L---KEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDG 368

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           + +   I KA  + R+M     +    V+YNI++DG       A A   F  M  RG   
Sbjct: 369 FMKAKMIPKAHRVYRQMLQSGTV-VSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVA 427

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T ++Y+ LM  F        A ++F  ML D   + ++V++N+++ G CR G + +A   
Sbjct: 428 TVVTYSALMDGFCSEGNVSAAVELFRRML-DRGCEPNLVSYNIIIRGLCRAGKLAKAYFY 486

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA-DSDLPPP 474
            E++ +    P+V T+ S  +G+                 +R +   +GV   +S +   
Sbjct: 487 FEKLLQRRLCPDVYTFNSFLHGLC----------------QRLDTVGDGVELFESMVSQG 530

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
             P+      L D   RA      LEI   M   G+ P+   +  +   +       +  
Sbjct: 531 TSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTL---IRWLCIAGRVD 587

Query: 535 SQARQDRRRERKRAAEAFKFW 555
                 R  ER+ A +A+ +W
Sbjct: 588 EALEVFRELERRSAPDAWSYW 608



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 119/519 (22%), Positives = 205/519 (39%), Gaps = 72/519 (13%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
             PD  A+  V+N      +  +   + ++    G +PD +TYNV I    +A R     
Sbjct: 37  CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 96

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L+++ E        T+ +LV   +  G L+ A  I++ M E           + ++  
Sbjct: 97  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGL 156

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD-- 231
           S    G  ++   +F  +L N                P++ +YT L+ G    G++ +  
Sbjct: 157 S--KAGRVEEARRIFVDMLGNGCR-------------PDAFVYTALISGLAKIGKLDEAL 201

Query: 232 ------------------------TVRMLGAMRRQEDNASHPD---------HVTYTTVV 258
                                    +R L A    ED  ++ D         H T+  +V
Sbjct: 202 VYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLV 261

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           +AL KA   + A   + +M+         TY  L+ G+ +  ++D+A   L+E  +   I
Sbjct: 262 AALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFI 321

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            PD V+Y  +IDG   +         F+EMR RG  P  ++Y  L+  F  +     A++
Sbjct: 322 -PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHR 380

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           V+ +ML+   V V  V +N++++G C+ G V EA      M+E G    V TY +L +G 
Sbjct: 381 VYRQMLQSGTV-VSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGF 439

Query: 439 SLARKPGEALLLWKEIKER-CE------------------VKKEGVNADSDLPPPLKPDE 479
                   A+ L++ + +R CE                  + K     +  L   L PD 
Sbjct: 440 CSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDV 499

Query: 480 ELLDA-LADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              ++ L  +C R       +E+   M   G  PN   Y
Sbjct: 500 YTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSY 538



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 109/212 (51%), Gaps = 8/212 (3%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           ++R+ T L+ G    G++   + +L  M         PD V +T V++ L +   +D A 
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEM------PCSPDMVAFTVVINGLCREKRLDEAF 61

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            VL    R G   + +TYN+ + G C+  ++D A +LL++M D+ K  P  V+Y  L+DG
Sbjct: 62  SVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM-DEKKCLPTTVTYTALVDG 120

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
            +       A+    +M  +G +PT  +YT ++   + + + + A ++F +ML +   + 
Sbjct: 121 LLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNG-CRP 179

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           D   +  L+ G  ++G ++EA   + +M ENG
Sbjct: 180 DAFVYTALISGLAKIGKLDEALVYLNQMVENG 211



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 189/467 (40%), Gaps = 77/467 (16%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           DT    A+LN     G+  + + L D+M      PD++ + V+I    R  R      VL
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           ER +  G      T+   +                         +CK  R          
Sbjct: 65  ERAVRAGCEPDYVTYNVFIDG-----------------------LCKAERV--------- 92

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                DD  ++ +K+         E   LP T       YT L+ G +  GR+ + + +L
Sbjct: 93  -----DDAFQLLKKM--------DEKKCLPTTVT-----YTALVDGLLKAGRLDEAMAIL 134

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M    +  + P   TYT V+  L KAG ++ AR++  +M   G   +   Y  L+ G 
Sbjct: 135 EQM---VEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGL 191

Query: 297 CQQLQIDKAKELLREMADDA---KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            +  ++D+A   L +M ++     +EPDVV +N++I       +   AL +F+E+    +
Sbjct: 192 AKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELD-DSL 250

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             T  ++  L+ A   + + + A   F + + + R    +  +  LV+G+ ++G ++EA 
Sbjct: 251 DLTHFTFNPLVAALCKAERTEEA-IAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEAL 309

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
             ++   E GF P+  TY S+ +G+    K G        ++E CE   E  N   +   
Sbjct: 310 LQLKEAVERGFIPDAVTYTSIIDGLC---KLG-------RVEEGCERFHEMRNRGYE--- 356

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              PD     AL D  ++A    KA  +   M + G   +   Y  I
Sbjct: 357 ---PDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNII 400


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 185/400 (46%), Gaps = 25/400 (6%)

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
           +AYN++++A    G  +K L ++  M + G +PD  T+NV++    +A R   +  + E 
Sbjct: 90  SAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEE 149

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSE 176
           +     +  + T+  L+ A    G +E A  +   M  R  R ++      +D       
Sbjct: 150 MQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMID----GLG 205

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G  D    +FE++       +SE  +  +       +Y +L+ G    GR     ++ 
Sbjct: 206 KSGHVDKAFFLFEEM-------TSEGLVATRV------VYNSLIHGLGRSGRADAAAKLF 252

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              R        PDHVT+T++V  L  AG    AR++  E   +G   +   YN+L+   
Sbjct: 253 ---REMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTL 309

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+  ++D+A E+  E+ +D  + PDV ++N L+DG         A     +M+  G  P 
Sbjct: 310 CKSKRLDEAWEIFGELEEDGLV-PDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPD 368

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
              Y TL+     S + + A ++  EM +    + D+V +N L++  C+ G +E+A R+ 
Sbjct: 369 VTVYNTLIDGLRKSGRVEEAGQLLLEM-QSLGYEPDVVTYNTLIDESCKGGRIEDALRLF 427

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           E +   GF  N  TY ++ NG+ +A +  EA  L+  +K+
Sbjct: 428 EEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQ 466



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 141/300 (47%), Gaps = 21/300 (7%)

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
           RI+  L +GY + G +  +V    A++R E +        Y +++ A VKAG   +A  V
Sbjct: 55  RIFIELARGYASAGLLEKSVE---ALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAV 111

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
              M + G+  +  T+N+L+  + +  ++D   +L  EM +     P+V++Y+ILID   
Sbjct: 112 YRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQ-NCSPNVITYSILIDAVC 170

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  AL  F +M++RG  P   +YT+++     S     A  +F+EM  +  V   +
Sbjct: 171 KCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRV 230

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L+ G  R G  + A ++   M   G  P+  T+ SL  G+ +A +  EA  +++E
Sbjct: 231 V-YNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQE 289

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            +              D+   L  D  L + L D   ++    +A EI   +EE G+ P+
Sbjct: 290 AR--------------DVGCAL--DVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPD 333



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 175/436 (40%), Gaps = 74/436 (16%)

Query: 24  GDDGPVESVKLFDVVVKRVRKFSDPDIV---------SDSKPDTAAYNAVLNACANLGKP 74
           G  G       F+V++   +K    D V          +  P+   Y+ +++A    G  
Sbjct: 116 GQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGV 175

Query: 75  KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134
           +K L++F  M   G +P++ TY  MI    ++       F+ E +   G+      + SL
Sbjct: 176 EKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSL 235

Query: 135 VAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLP 193
           +    G G            R GR D   K+ RE                          
Sbjct: 236 IH---GLG------------RSGRADAAAKLFRE-------------------------- 254

Query: 194 NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
                     +L K   P+   +T+L+ G    GR S+  R+    R   D     D   
Sbjct: 255 ----------MLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEAR---DVGCALDVNL 301

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           Y  ++  L K+  +D A ++  E+   G+  +  T+N L+ G C+  +I  A  LL +M 
Sbjct: 302 YNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDM- 360

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
             A   PDV  YN LIDG         A     EM++ G  P  ++Y TL+       + 
Sbjct: 361 KRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRI 420

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE---NGFY-PNVA 429
           + A ++F+E+    +   + V +N ++ G C  G V+EA ++   MK+   +G   P+  
Sbjct: 421 EDALRLFEEI--SAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFV 478

Query: 430 TYGSLANGISLARKPG 445
           TY +L NG   AR+ G
Sbjct: 479 TYTTLLNG---ARQAG 491



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 160/376 (42%), Gaps = 37/376 (9%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  +S ++  +   G  G  +++K+F  +  R             +P+   Y ++++ 
Sbjct: 157 PNVITYSILIDAVCKCG--GVEKALKVFLDMKSR-----------GCRPNIFTYTSMIDG 203

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
               G   K   LF++M   G     + YN +I    R+ R      +   +L  G+   
Sbjct: 204 LGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPD 263

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             TF SLV    G G    A    +  +E R   C +  +++L +   +        DE 
Sbjct: 264 HVTFTSLV---YGLGVAGRASEARRIFQEARDVGCAL--DVNLYNVLIDTLCKSKRLDEA 318

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           +E           E  L+P  +  N+     LM G    GR+ D   +LG M+R      
Sbjct: 319 WEIF-----GELEEDGLVPDVYTFNA-----LMDGLCKSGRIHDAFILLGDMKRA---GC 365

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            PD   Y T++  L K+G ++ A Q+L EM  +G   + +TYN L+   C+  +I+ A  
Sbjct: 366 TPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALR 425

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG----IAPTKISYTTL 363
           L  E++  AK   + V+YN +++G  +      A   FN M+       I P  ++YTTL
Sbjct: 426 LFEEIS--AKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTL 483

Query: 364 MKAFALSSQPKLANKV 379
           +     +   +LAN +
Sbjct: 484 LNGARQAGLSELANSL 499


>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
 gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
          Length = 584

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 150/271 (55%), Gaps = 21/271 (7%)

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           L+  ++  S  PP       PN   + +L+       R++D  R L  MR   D   HPD
Sbjct: 80  LILATMLHSGTPP-------PNQHAFASLIDALSKSTRLADAARALELMR---DAGIHPD 129

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR-----ITYNILLKGYCQQLQIDKA 305
            VT+T ++    K   M+RA ++  EM    + +NR       Y +L+ GYC++L++D+A
Sbjct: 130 VVTFTVMIRGFCKNRMMERAWEIFQEM----IKSNRCQPDCFLYGVLIDGYCKELRMDRA 185

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE-MRARGIAPTKISYTTLM 364
            ELLREM  + +I+PDVV YN ++DG    +    A  F +E M  +G +PT ++YT+L+
Sbjct: 186 LELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLI 245

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           +    + + KLA ++++ ML + +++  IV+++++++G  + G V +A R++  M+  G 
Sbjct: 246 RGACKAKKMKLAVRIWNAML-ERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGC 304

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIK 455
             NV  Y +L +G+  +    +A  L++ +K
Sbjct: 305 ELNVVIYTTLIDGLCKSGFLDDAYALYRIMK 335



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 149/338 (44%), Gaps = 38/338 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF----GAKPDVLTYNVMIKLCARASRKH 110
           +PD   YN++++    L +  +FL+ +  + E     G  P V+TY  +I+   +A +  
Sbjct: 199 QPDVVIYNSIVD---GLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKMK 255

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
           L V +   +LE  I   + ++  ++      G +  A  +V+ M         +  EL++
Sbjct: 256 LAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREME-------TLGCELNV 308

Query: 171 EDYSSENEGDDD----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
             Y++  +G       DD     +++  S             F PN R Y TL+  +   
Sbjct: 309 VIYTTLIDGLCKSGFLDDAYALYRIMKRS-----------GAF-PNQRTYATLIDTFCRN 356

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            R    + +   +R    +    D   YT VVS L +   +D AR +  EM   GV A+ 
Sbjct: 357 DRTETALGLFDHIR----DYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADT 412

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
             YN+LL G  +  + ++A  +L E+ DD     ++++YN +I G  L       +  F 
Sbjct: 413 HAYNVLLHGAFRSERPEEAFRILEELGDDPGCVANLLTYNTVIAGCCL----ESGMVLFY 468

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           EMR RGIAP   +Y+ L+     S +   A  + +EML
Sbjct: 469 EMRQRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEML 506



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 165/402 (41%), Gaps = 61/402 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASR-KHLL 112
           +PD   Y  +++      +  + L+L  +M  E   +PDV+ YN ++    R++R     
Sbjct: 163 QPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAW 222

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            F+ E ++  G +  + T+ SL+        +++A  I  AM E                
Sbjct: 223 KFLDETMVLQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLE---------------- 266

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                            K+ P  ++                  Y+ ++ G    GRV D 
Sbjct: 267 ----------------RKIQPTIVS------------------YSVIIDGLSKAGRVYDA 292

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            R++   R  E      + V YTT++  L K+G +D A  +   M R G   N+ TY  L
Sbjct: 293 YRVV---REMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATL 349

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +C+  + + A  L   + D   +  DV  Y  ++ G         A   F EMR  G
Sbjct: 350 IDTFCRNDRTETALGLFDHIRDYCPL--DVAMYTAVVSGLCRERRLDDARALFREMRLAG 407

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           ++    +Y  L+     S +P+ A ++ +E+  DP    +++ +N ++ G C    +E  
Sbjct: 408 VSADTHAYNVLLHGAFRSERPEEAFRILEELGDDPGCVANLLTYNTVIAGCC----LESG 463

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             +   M++ G  P+ ATY +L + +  + + G A  L +E+
Sbjct: 464 MVLFYEMRQRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEM 505



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 4/198 (2%)

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           AL ++G  + A + L E T  G        ++++   C+   +  A  +L  M       
Sbjct: 33  ALHESGDANAAARFLREKTAAGSIFPGFLSSVVIDRACKSGDLRGALLILATMLHSGTPP 92

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+  ++  LID        A A      MR  GI P  +++T +++ F  +   + A ++
Sbjct: 93  PNQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVTFTVMIRGFCKNRMMERAWEI 152

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK-ENGFYPNVATYGSLANGI 438
           F EM++  R + D   + +L++GYC+   ++ A  ++  M+ E    P+V  Y S+ +G+
Sbjct: 153 FQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGL 212

Query: 439 SLARKPGEALLLWKEIKE 456
             + +  EA   WK + E
Sbjct: 213 CRSNRFLEA---WKFLDE 227


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 191/442 (43%), Gaps = 43/442 (9%)

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M+E    PDV TYN++I    +AS+      +L  +++ G+T    TF S++      G 
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 144 LEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
            E A +++  M  R  R   C          Y++   G     +    K L +    S  
Sbjct: 61  FERAHSLLAVMAERNCRPSCCT---------YNTLISGLCKQQNVDRAKTLVDEFVSSG- 110

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                  F P+   Y+ L  G    GR+ +   ++  M     N   P+ VTY T++  L
Sbjct: 111 -------FVPDVVTYSILADGLCKRGRIDEAFELVKEM---SGNGCTPNLVTYNTLIDGL 160

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
            KA   ++A ++L  +   G   + +TY I++ G C++ ++DKA +++  M       P 
Sbjct: 161 CKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRG-CTPS 219

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           V++Y  L++G         A   F EM ++      ++Y +L+  +  SS+ K A KV D
Sbjct: 220 VITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD 279

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
            +   P + V    +N L++GYC+ G ++E   + E M   G  PN+ TY  + +G+   
Sbjct: 280 GIRGTPYIDV----YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKH 335

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
            K  EA    + +                      PD    + + D   +A+  ++A ++
Sbjct: 336 GKVDEAFPFLESMH----------------SAGCVPDVVSYNIIIDGLFKASKPKEARQV 379

Query: 502 VACMEEHGIPPNKTKYKKIYVE 523
           +  M + GIPP+   Y  +  +
Sbjct: 380 LDQMIQAGIPPDAVTYNTLMAQ 401



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/524 (21%), Positives = 217/524 (41%), Gaps = 81/524 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLC--ARASRKHLL 112
           PD   YN +++      K  K  ++  +M + G  PD +T+N +M  LC   +  R H L
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG------------RRD 160
           + V+    E        T+ +L++      +++ A+T+V                     
Sbjct: 68  LAVMA---ERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADG 124

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP--------PLLPKTFAPN 212
           +CK  R  +  +   E  G+    + V    L + +  +S+          L+   F P+
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPD 184

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              YT ++ G   EGR+   ++M+  M ++      P  +TYT ++  L + G +D A  
Sbjct: 185 VVTYTIIVDGLCKEGRLDKALKMVEGMLKR---GCTPSVITYTALMEGLCRTGRVDEAHH 241

Query: 273 VLAEMTRIGVPANRI--------------------------------TYNILLKGYCQQL 300
           +  EM      A+ +                                 YN L+ GYC++ 
Sbjct: 242 IFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEG 301

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+   +  +MA    + P++ +YNI++DG         A  F   M + G  P  +SY
Sbjct: 302 RLDEIPNVFEDMACRGCV-PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSY 360

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++     +S+PK A +V D+M++   +  D V +N L+  +C+    ++A  I++ M 
Sbjct: 361 NIIIDGLFKASKPKEARQVLDQMIQ-AGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMI 419

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKKEGVNADSDLPPPLKPDE 479
           + G  P+  TY +L +G+S   + G+A  L  E ++  C V                   
Sbjct: 420 KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVV------------SACTTYN 467

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
            ++D L     +    ++AL ++  M  HG+  N   Y  I+++
Sbjct: 468 TIIDRLC----KEGCLKQALLLMDHMTGHGVEANTVTY-NIFID 506



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 186/439 (42%), Gaps = 33/439 (7%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V R +   D  + S   PD   Y+ + +     G+  +  +L  +M   G  P+++TYN 
Sbjct: 96  VDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNT 155

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REG 157
           +I    +AS+      +LE ++  G    + T+  +V      G L+ A  +V+ M + G
Sbjct: 156 LIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRG 215

Query: 158 -----------RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
                         +C+  R  +      E    D   D +    L N    SS      
Sbjct: 216 CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQ 275

Query: 207 KTF-----APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH---PDHVTYTTVV 258
           K        P   +Y  LM GY  EGR+ +   +       ED A     P+  TY  V+
Sbjct: 276 KVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVF------EDMACRGCVPNIKTYNIVM 329

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
             L K G +D A   L  M   G   + ++YNI++ G  +  +  +A+++L +M   A I
Sbjct: 330 DGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQ-AGI 388

Query: 319 EPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
            PD V+YN L+  F      DD+ G L     M   G+ P  ++Y TL+   + +++   
Sbjct: 389 PPDAVTYNTLMAQFCKEERFDDAVGIL---KNMIKAGVDPDNVTYNTLISGLSQTNRLGD 445

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A ++  EMLR+  V      +N +++  C+ G +++A  +++ M  +G   N  TY    
Sbjct: 446 AYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFI 505

Query: 436 NGISLARKPGEALLLWKEI 454
           + +    +  EA  L  E+
Sbjct: 506 DRLCKEGRLDEASSLLSEM 524



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 184/434 (42%), Gaps = 64/434 (14%)

Query: 34  LFDVVVKRVRKFSDPDIVSD-----SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           L D   K  R    P++  D       P+   YN V++     GK  +     + MH  G
Sbjct: 293 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 352

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
             PDV++YN++I    +AS+      VL+++++ GI     T+ +L+A +          
Sbjct: 353 CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF---------- 402

Query: 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
                        CK                ++  DD V   +L N I    +P      
Sbjct: 403 -------------CK----------------EERFDDAV--GILKNMIKAGVDP------ 425

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              ++  Y TL+ G     R+ D   ++  M R     S     TY T++  L K G + 
Sbjct: 426 ---DNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSAC--TTYNTIIDRLCKEGCLK 480

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  ++  MT  GV AN +TYNI +   C++ ++D+A  LL EM D  +   D VSY  +
Sbjct: 481 QALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM-DTLR---DEVSYTTV 536

Query: 329 IDGFILIDDSAGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           I G    +    A     EM A +G+  T  ++  L+ AF  + +   A  + + M++  
Sbjct: 537 IIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRG 596

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
                ++ +NM++   C++  V++A  + + M   G   +  +Y  L  G+    +  EA
Sbjct: 597 -CSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEA 655

Query: 448 LLLWKEIKER-CEV 460
           L + +E+    CE+
Sbjct: 656 LQVLEEMASSDCEI 669



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 175/416 (42%), Gaps = 36/416 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P++K ++ V+  L   G              V     F +    +   PD  +YN +
Sbjct: 317 GCVPNIKTYNIVMDGLCKHGK-------------VDEAFPFLESMHSAGCVPDVVSYNII 363

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++      KPK+  Q+ DQM + G  PD +TYN ++    +  R    V +L+ +++ G+
Sbjct: 364 IDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV 423

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+ +L++   G           + M E  R+ C +         S+    +   D
Sbjct: 424 DPDNVTYNTLIS---GLSQTNRLGDAYELMHEMLRNGCVV---------SACTTYNTIID 471

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
               E  L  ++       +       N+  Y   +     EGR+ +   +L  M     
Sbjct: 472 RLCKEGCLKQALLLMDH--MTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMD---- 525

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI-GVPANRITYNILLKGYCQQLQID 303
             +  D V+YTTV+  L KA  +DRA ++  EM  + G+     T+N+L+  + +  ++D
Sbjct: 526 --TLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLD 583

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A  LL  M       P V++YN++I     +D    A   F+EM  RGI  + +SYT L
Sbjct: 584 EALTLLELMVQRG-CSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVL 642

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           +       + K A +V +EM      ++D +    L       G  EEA  ++ RM
Sbjct: 643 IYGLCGQGRGKEALQVLEEM-ASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 155/312 (49%), Gaps = 25/312 (8%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              N R YT L+ G    G       M   M  QED    P+  TY  V++ L K G   
Sbjct: 229 LVANERTYTVLINGLFKNGVKKQGFEMYEKM--QEDGV-FPNLYTYNCVMNQLCKDGRTK 285

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A QV  EM   GV  N +TYN L+ G C+++++++A +++ +M  D  I P++++YN L
Sbjct: 286 DAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTL 344

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDGF  +     AL+   ++++RG++P+ ++Y  L+  F        A K+  EM  +  
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM-EERG 403

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +K   V + +L++ + R   +E+A ++   M+E G  P+V TY  L +G  +  +  EA 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 449 LLWKEIKER-CEVKKEGVNADSDLPPPLKPDEELLDALA-DICVRAAFFRKALEIVACME 506
            L+K + E+ CE                 P+E + + +    C   + +R AL+++  ME
Sbjct: 464 RLFKSMVEKNCE-----------------PNEVIYNTMILGYCKEGSSYR-ALKLLKEME 505

Query: 507 EHGIPPNKTKYK 518
           E  + PN   Y+
Sbjct: 506 EKELAPNVASYR 517



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 183/405 (45%), Gaps = 27/405 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P +  +N +L          ++   F++ ++     DV ++ ++IK C  A        +
Sbjct: 127 PGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLDVYSFGILIKGCCEAGEIEKSFDL 185

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G +  +  + +L+      G++E A+ +   M  G+  +    R   +     
Sbjct: 186 LIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM--GKLGLVANERTYTVLINGL 243

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G      E++EK+  + +              PN   Y  +M     +GR  D  ++
Sbjct: 244 FKNGVKKQGFEMYEKMQEDGV-------------FPNLYTYNCVMNQLCKDGRTKDAFQV 290

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              MR +       + VTY T++  L +   ++ A +V+ +M   G+  N ITYN L+ G
Sbjct: 291 FDEMRER---GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   ++ KA  L R++     + P +V+YNIL+ GF    D++GA     EM  RGI P
Sbjct: 348 FCGVGKLGKALSLCRDLKSRG-LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKP 406

Query: 356 TKISYTTLMKAFALSSQPKLANKV---FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +K++YT L+  FA S   + A ++    +E+   P    D+  +++L+ G+C  G + EA
Sbjct: 407 SKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP----DVHTYSVLIHGFCIKGQMNEA 462

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            R+ + M E    PN   Y ++  G         AL L KE++E+
Sbjct: 463 SRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEK 507



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 139/289 (48%), Gaps = 19/289 (6%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  ++  ++    +AG ++++  +L E+T  G   N + Y  L+ G C++ +I+KAK+L 
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            EM     +  +  +Y +LI+G             + +M+  G+ P   +Y  +M     
Sbjct: 222 FEMGKLGLVANER-TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK 280

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             + K A +VFDEM R+  V  +IV +N L+ G CR   + EA +++++MK +G  PN+ 
Sbjct: 281 DGRTKDAFQVFDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY +L +G     K G+AL L +++K R             L P L     L+       
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSR------------GLSPSLVTYNILVSGFC--- 384

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
            R      A ++V  MEE GI P+K  Y  I ++  +R    + A Q R
Sbjct: 385 -RKGDTSGAAKMVKEMEERGIKPSKVTY-TILIDTFARSDNMEKAIQLR 431



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 144/302 (47%), Gaps = 21/302 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  L+KG    G +  +  +L  +    +    P+ V YTT++    K G +++A+ +  
Sbjct: 166 FGILIKGCCEAGEIEKSFDLLIELT---EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF 222

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM ++G+ AN  TY +L+ G  +     +  E+  +M +D  + P++ +YN +++     
Sbjct: 223 EMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG-VFPNLYTYNCVMNQLCKD 281

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             +  A   F+EMR RG++   ++Y TL+       +   ANKV D+M  D  +  +++ 
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLIT 340

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N L++G+C +G + +A  +   +K  G  P++ TY  L +G         A  + KE++
Sbjct: 341 YNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEME 400

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           ER                 +KP +     L D   R+    KA+++   MEE G+ P+  
Sbjct: 401 ER----------------GIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVH 444

Query: 516 KY 517
            Y
Sbjct: 445 TY 446



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 146/339 (43%), Gaps = 57/339 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN V+N     G+ K   Q+FD+M E G   +++TYN +I    R  + +    V
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKV 325

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++++   GI   + T+ +L+  + G G L  A ++ + ++                    
Sbjct: 326 VDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLK-------------------- 365

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                          +  +P+   Y  L+ G+  +G  S   +M
Sbjct: 366 ------------------------------SRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M   E+    P  VTYT ++    ++ +M++A Q+   M  +G+  +  TY++L+ G
Sbjct: 396 VKEM---EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C + Q+++A  L + M +    EP+ V YN +I G+     S  AL    EM  + +AP
Sbjct: 453 FCIKGQMNEASRLFKSMVEK-NCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAP 511

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKV 391
              SY  +++      + K A ++ ++M+    DP   +
Sbjct: 512 NVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSI 550



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 18/217 (8%)

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q   +  LL  + +    +     Y ++I+ ++       ++++FNEM   G  P    +
Sbjct: 73  QFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCF 132

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+     SS        F+E     +V +D+ ++ +L++G C  G +E++  ++  + 
Sbjct: 133 NYLLTFVVGSSSFNQWWSFFNE--NKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELT 190

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           E GF PNV  Y +L +G     K GE   + K      E+ K G+ A          +E 
Sbjct: 191 EFGFSPNVVIYTTLIDGCC---KKGE---IEKAKDLFFEMGKLGLVA----------NER 234

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
               L +   +    ++  E+   M+E G+ PN   Y
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTY 271


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 206/449 (45%), Gaps = 37/449 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           + + G+ P +  ++T+++ L   G    VE+++  D ++ R             +P    
Sbjct: 165 IFKLGFKPSIITFNTLINGLCIEGR--IVEAMEQLDYIMSR-----------GYQPTVYT 211

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  ++N    +GK    +    +M E   +P+V++Y+++I    +    +  V +   + 
Sbjct: 212 HTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMR 271

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDYSSENE 178
            +GI+  + T+ SL+      G  + A  + + M E   + DV      +D    +   E
Sbjct: 272 SIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD----ALCKE 327

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   +   VF K+    I  + EP ++          Y++L+ G        ++  +L  
Sbjct: 328 GVVLEALSVFGKM----IQIAMEPDIVT---------YSSLIHGVCKSSLWKESSTLLNE 374

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      PD VT++  V    K G +  A+ ++  M   G+  N +TYN L+ GYC 
Sbjct: 375 MLSRN---IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCL 431

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             Q+D+A+++   M +     PDV+SYNILI G+   +    A   F+EM  +G+ P  I
Sbjct: 432 HSQMDEARKVFDIMVNKG-CAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSI 490

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++TTL+     + +P  A ++F +M        D++ ++ L+ G+C+ G ++EA  + E 
Sbjct: 491 THTTLISGLCQAGRPYAAKELFKKM-GSHGCPPDLITYSTLLSGFCKHGHLDEALALFEA 549

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEA 447
           +K++   PN      L  G+  A K  +A
Sbjct: 550 LKKSQLKPNHVICKILLGGMCKAGKLEDA 578



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 210/483 (43%), Gaps = 41/483 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L A   +      + ++ +M  FG    V T  ++I          L   V
Sbjct: 102 PCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSV 161

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRR-----------DVCK 163
           L +I ++G    + TF +L+      G + E  E +   M  G +            +CK
Sbjct: 162 LGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCK 221

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNS------INPSSEPPLLPKTF--APNSRI 215
           I +      +  +    D + + V   ++ +S      +N + +     ++   +P    
Sbjct: 222 IGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVT 281

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y +L+ G  N G+      +   M   E N   PD VT++ +V AL K G +  A  V  
Sbjct: 282 YNSLIYGMCNSGQWKQASILFKEML--EWNMK-PDVVTFSILVDALCKEGVVLEALSVFG 338

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M +I +  + +TY+ L+ G C+     ++  LL EM     I PDVV+++I +D F   
Sbjct: 339 KMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSR-NIRPDVVTFSIWVDVFCKK 397

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
              + A +  N M  RG+ P  ++Y +LM  + L SQ   A KVFD M+ +     D+++
Sbjct: 398 GMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMV-NKGCAPDVLS 456

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L++GYC+   ++EAK++ + M   G  PN  T+ +L +G+  A +P  A  L+K++ 
Sbjct: 457 YNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKM- 515

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                           PP L     LL        +     +AL +   +++  + PN  
Sbjct: 516 -----------GSHGCPPDLITYSTLLSGFC----KHGHLDEALALFEALKKSQLKPNHV 560

Query: 516 KYK 518
             K
Sbjct: 561 ICK 563



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 59/315 (18%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           T T +++ L     +     VL ++ ++G   + IT+N L+ G C + +I +A E L  +
Sbjct: 141 TLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYI 200

Query: 313 AD----------------------------------DAKIEPDVVSYNILIDGFI---LI 335
                                               +   EP+VVSY+I+ID      L+
Sbjct: 201 MSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLV 260

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           ++   A+  F  MR+ GI+PT ++Y +L+     S Q K A+ +F EML +  +K D+V 
Sbjct: 261 NE---AVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEML-EWNMKPDVVT 316

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +++LV+  C+ G+V EA  +  +M +    P++ TY SL +G+  +        LWKE  
Sbjct: 317 FSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSS-------LWKE-- 367

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                       +  L   ++PD        D+  +     +A  I+  M E G+ PN  
Sbjct: 368 -------SSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVV 420

Query: 516 KYKKIY--VEMHSRM 528
            Y  +     +HS+M
Sbjct: 421 TYNSLMDGYCLHSQM 435



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 117/272 (43%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P    +  +++ALV+    D    +  +M   GV  +  T  IL+   C    +     +
Sbjct: 102 PCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSV 161

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L ++      +P ++++N LI+G  +      A+   + + +RG  PT  ++T ++    
Sbjct: 162 LGKIFK-LGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLC 220

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              +   A  V+ + + +   + ++V+++++++  C+  LV EA  +   M+  G  P V
Sbjct: 221 KIGKTS-AAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTV 279

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY SL  G+  + +  +A +L+KE+ E                  +KPD      L D 
Sbjct: 280 VTYNSLIYGMCNSGQWKQASILFKEMLEW----------------NMKPDVVTFSILVDA 323

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +AL +   M +  + P+   Y  +
Sbjct: 324 LCKEGVVLEALSVFGKMIQIAMEPDIVTYSSL 355


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 183/401 (45%), Gaps = 20/401 (4%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +Y  V+N     G   K    + +M +    PDV+TY+ +I    +       +
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +++ G+     T+ S++  Y      + A   ++ MR    +   ++    L DY
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEP-DVVTYNSLMDY 310

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +N G   +  ++F+              +  +   P+   Y TL++GY  +G + +  
Sbjct: 311 LCKN-GRSTEARKIFD-------------SMTKRGLEPDIATYCTLLQGYATKGALVEMH 356

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M R   N  HPDH  +  ++ A  K   +D A  V ++M + G+  N +TY  ++
Sbjct: 357 ALLDLMVR---NGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVI 413

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+   +D A     +M D+  + P+++ Y  LI    + D    A     EM  RGI
Sbjct: 414 GILCKSGSVDDAMLYFEQMIDEG-LTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               I + +++ +     +   + K+FD M+R   VK +++ ++ L++GYC  G ++EA 
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVR-IGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +++  M   G  P+  TY +L NG     +  +AL L+KE+
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEM 572



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 202/492 (41%), Gaps = 108/492 (21%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P V TY ++I  C RA R  L    L  +++ G  +   T
Sbjct: 65  PAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAIT 124

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+                       + +C   R  D  D              V  +
Sbjct: 125 FTPLL-----------------------KGLCADKRTSDAMDI-------------VLRR 148

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +        +E   +P  F+      T L+KG  +E R  + + +L  M       S PD
Sbjct: 149 M--------TELSCMPDVFSC-----TILLKGLCDENRSQEALELLHMMADDRGGGSAPD 195

Query: 251 HVTYTTV-----------------------------------VSALVKAGSMDRARQVLA 275
            V+YTTV                                   ++AL K  +MD+A +VL 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLT 255

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M + GV  N +TYN +L GYC   Q  +A   L++M  D  +EPDVV+YN L+D     
Sbjct: 256 TMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG-VEPDVVTYNSLMDYLCKN 314

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             S  A   F+ M  RG+ P   +Y TL++ +A        + + D M+R+  +  D   
Sbjct: 315 GRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG-IHPDHHV 373

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L+  Y +   V+EA  +  +M+++G  PNV TYG++   +  +    +A+L ++++ 
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM- 432

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                       D  L P +     L+ +L   C+    + KA E++  M + GI  N  
Sbjct: 433 -----------IDEGLTPNIIVYTSLIHSL---CIFDK-WDKAEELILEMLDRGICLNTI 477

Query: 516 KYKKIYVEMHSR 527
            +  I   +HS 
Sbjct: 478 FFNSI---IHSH 486



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/474 (21%), Positives = 213/474 (44%), Gaps = 70/474 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-KPDTA 59
           M+++G +P+   +++++    +S  + P E++      +K++R        SD  +PD  
Sbjct: 257 MVKNGVMPNCMTYNSILHGYCSS--EQPKEAIGF----LKKMR--------SDGVEPDVV 302

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++     G+  +  ++FD M + G +PD+ TY  +++  A       +  +L+ +
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLM 362

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIRE 167
           +  GI      F  L+ AY     ++ A  +   MR+   +            +CK    
Sbjct: 363 VRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCK---- 418

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPS-------------------SEP---PLL 205
                      G  DD    FE+++   + P+                   +E     +L
Sbjct: 419 ----------SGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEML 468

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            +    N+  + +++  +  EGRV ++ ++   M R       P+ +TY+T++     AG
Sbjct: 469 DRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRI---GVKPNVITYSTLIDGYCLAG 525

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            MD A ++L+ M  +G+  + +TYN L+ GYC+  ++D A  L +EM     + P++++Y
Sbjct: 526 KMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITY 584

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-L 384
           NI++ G      +A A   +  +   G      +Y  ++     ++    A ++F  + L
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 644

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            D  ++++   +N+++    ++G  +EAK +   +  NG  P+V TY  +A  +
Sbjct: 645 TD--LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 696



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/478 (20%), Positives = 208/478 (43%), Gaps = 54/478 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK--------- 55
           G  P V +++TV++     GD     S K +    + + +   PD+V+ S          
Sbjct: 191 GSAPDVVSYTTVINGFFKEGD-----SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQ 245

Query: 56  ------------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
                             P+   YN++L+   +  +PK+ +    +M   G +PDV+TYN
Sbjct: 246 AMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYN 305

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-RE 156
            ++    +  R      + + + + G+   + T+ +L+  Y   G L     ++  M R 
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN 365

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
           G      +   L +  Y+ + +   D+   VF K+  + +NP             N   Y
Sbjct: 366 GIHPDHHVFNIL-ICAYAKQEK--VDEAMLVFSKMRQHGLNP-------------NVVTY 409

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++      G V D +     M    D    P+ + YT+++ +L      D+A +++ E
Sbjct: 410 GAVIGILCKSGSVDDAMLYFEQMI---DEGLTPNIIVYTSLIHSLCIFDKWDKAEELILE 466

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  N I +N ++  +C++ ++ ++++L   M     ++P+V++Y+ LIDG+ L  
Sbjct: 467 MLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVR-IGVKPNVITYSTLIDGYCLAG 525

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A    + M + G+ P  ++Y TL+  +   S+   A  +F EM+    V  +I+ +
Sbjct: 526 KMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITY 584

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           N++++G         AK +   + ++G    ++TY  + +G+       EAL +++ +
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 642



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 188/427 (44%), Gaps = 33/427 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P +  + T++   A  G    VE   L D++V+           +   PD   
Sbjct: 327 MTKRGLEPDIATYCTLLQGYATKG--ALVEMHALLDLMVR-----------NGIHPDHHV 373

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++ A A   K  + + +F +M + G  P+V+TY  +I +  ++      +   E+++
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMI 433

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+T  +  + SL+ +   F   + AE ++  M +  R +C      +   +S   EG 
Sbjct: 434 DEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLD--RGICLNTIFFNSIIHSHCKEGR 491

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++F+ ++   + P             N   Y+TL+ GY   G++ +  ++L +M 
Sbjct: 492 VIESEKLFDLMVRIGVKP-------------NVITYSTLIDGYCLAGKMDEATKLLSSMF 538

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD VTY T+++   +   MD A  +  EM   GV  N ITYNI+L+G     
Sbjct: 539 SV---GMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTR 595

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +   AKEL   +      + ++ +YNI++ G    + +  AL  F  +    +     ++
Sbjct: 596 RTAAAKELYVGITKSGT-QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++ A     +   A  +F  +  +  V  D+  ++++ E     GL+EE   +   M+
Sbjct: 655 NIMIGALLKVGRNDEAKDLFAALSANGLVP-DVRTYSLMAENLIEQGLLEELDDLFLSME 713

Query: 421 ENGFYPN 427
           ENG   N
Sbjct: 714 ENGCTAN 720



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 112/275 (40%), Gaps = 31/275 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G  P+V  +ST++     +G     E+ KL   +      FS        KPD   
Sbjct: 502 MVRIGVKPNVITYSTLIDGYCLAGKMD--EATKLLSSM------FS-----VGMKPDCVT 548

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N    + +    L LF +M   G  P+++TYN++++      R      +   I 
Sbjct: 549 YNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGIT 608

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G  L ++T+  ++         + A  + Q +     D+    R  ++   +    G 
Sbjct: 609 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL--CLTDLQLETRTFNIMIGALLKVGR 666

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           +D+  ++F  L  N +              P+ R Y+ + +  + +G + +   +  +M 
Sbjct: 667 NDEAKDLFAALSANGL-------------VPDVRTYSLMAENLIEQGLLEELDDLFLSM- 712

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
             E+N    +     ++V  L++ G + RA   L+
Sbjct: 713 --EENGCTANSRMLNSIVRKLLQRGDITRAGTYLS 745


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 219/480 (45%), Gaps = 69/480 (14%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S P   AYN +L     +GK  + L++F++M +  A P++ TYN++I +  RA +     
Sbjct: 339 SIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAF 397

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLE 171
            + + + + G+                F ++     +V  + + ++  + C +  E+D +
Sbjct: 398 ELRDSMQKAGL----------------FPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYK 441

Query: 172 DYSSE------------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
             + +              G  DD  +V+EK+L +                 NS +YT+L
Sbjct: 442 VCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRT-------------NSIVYTSL 488

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-T 278
           +K + N GR  D  ++   M  Q  N S PD     T +  + KAG  ++ R +  E+  
Sbjct: 489 IKNFFNHGRKEDGHKIYKDMINQ--NCS-PDLQLLNTYMDCMFKAGEPEKGRAMFEEIKA 545

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R  VP  R +Y+IL+ G  +    ++  EL   M +   +  D  +YNI+IDGF      
Sbjct: 546 RRFVPDAR-SYSILIHGLIKAGFANETYELFYSMKEQGCV-LDTRAYNIVIDGFCKCGKV 603

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A     EM+ +G  PT ++Y +++   A   +   A  +F+E  +  R+++++V ++ 
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA-KSKRIELNVVIYSS 662

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-R 457
           L++G+ ++G ++EA  I+E + + G  PN+ T+ SL + +  A +  EAL+ ++ +KE +
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           C                  P++     L +   +   F KA      M++ G+ P+   Y
Sbjct: 723 C-----------------TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISY 765



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/532 (20%), Positives = 220/532 (41%), Gaps = 91/532 (17%)

Query: 7   LPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVKRVRKFSDPD---- 49
           +P   A++T++    ++G               G + SV  ++ ++  +RK    D    
Sbjct: 305 VPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALK 364

Query: 50  ----IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105
               +  D+ P+ + YN +++     GK     +L D M + G  P+V T N+M+    +
Sbjct: 365 VFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424

Query: 106 ASRKHLLVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
           + +      + E   EM   +C     TF SL+      G ++ A  + + M +      
Sbjct: 425 SQKLDEACAMFE---EMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTN 481

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP--------------SSEPP----- 203
            I+    ++++   N G  +D  ++++ ++  + +P              + EP      
Sbjct: 482 SIVYTSLIKNFF--NHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539

Query: 204 ---LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
              +  + F P++R Y+ L+ G +  G  ++T  +  +M+ Q       D   Y  V+  
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ---GCVLDTRAYNIVIDG 596

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
             K G +++A Q+L EM   G     +TY  ++ G  +  ++D+A  L  E A   +IE 
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE-AKSKRIEL 655

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           +VV Y+ LIDGF  +     A     E+  +G+ P   ++ +L+ A   + +   A   F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRM---------------------------------- 406
             M ++ +   + V + +L+ G C++                                  
Sbjct: 716 QSM-KELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774

Query: 407 -GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            G + EA  + +R K NG  P+ A Y ++  G+S   +  +A  L++E + R
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 125/557 (22%), Positives = 235/557 (42%), Gaps = 60/557 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVES-VKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M   GY P V  ++T++   A    +G V+S + L D +     K S  D       D  
Sbjct: 194 MQELGYEPTVHLFTTLIRGFA---KEGRVDSALSLLDEM-----KSSSLD------ADIV 239

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN  +++   +GK     + F ++   G KPD +TY  MI +  +A+R    V + E +
Sbjct: 240 LYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL 299

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            +     C   + +++  Y   G  + A ++++  R        I     L        G
Sbjct: 300 EKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT--CLRKMG 357

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL-MKGYMNEGRVSDTVRMLGA 238
             D+  +VFE++  ++    S   +L        ++ T   ++  M +  +   VR +  
Sbjct: 358 KVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNI 417

Query: 239 M------RRQEDNA-----------SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           M       ++ D A             PD +T+ +++  L K G +D A +V  +M    
Sbjct: 418 MVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSD 477

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              N I Y  L+K +    + +   ++ ++M +     PD+   N  +D      +    
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ-NCSPDLQLLNTYMDCMFKAGEPEKG 536

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPRVKVDIVAWNML 399
              F E++AR   P   SY+ L+       +   AN+ ++    +++    +D  A+N++
Sbjct: 537 RAMFEEIKARRFVPDARSYSILIHGLI---KAGFANETYELFYSMKEQGCVLDTRAYNIV 593

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK-ERC 458
           ++G+C+ G V +A +++E MK  GF P V TYGS+ +G++   +  EA +L++E K +R 
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653

Query: 459 EVKKEGVNADSD------------------LPPPLKPDEELLDALADICVRAAFFRKALE 500
           E+     ++  D                  +   L P+    ++L D  V+A    +AL 
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALV 713

Query: 501 IVACMEEHGIPPNKTKY 517
               M+E    PN+  Y
Sbjct: 714 CFQSMKELKCTPNQVTY 730



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/480 (22%), Positives = 200/480 (41%), Gaps = 44/480 (9%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           VV+ +RKF         +P  +AY  ++ A + +      L LF QM E G +P V  + 
Sbjct: 155 VVQMMRKFK-------FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFT 207

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I+  A+  R    + +L+ +    +   +  +   + ++   G +++A      +   
Sbjct: 208 TLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN 267

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                ++     +      N    D+  E+FE L  N          +P T+A     Y 
Sbjct: 268 GLKPDEVTYTSMIGVLCKANR--LDEAVEMFEHLEKNR--------RVPCTYA-----YN 312

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           T++ GY + G+  +   +L    RQ    S P  + Y  +++ L K G +D A +V  EM
Sbjct: 313 TMIMGYGSAGKFDEAYSLL---ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            +   P N  TYNIL+   C+  ++D A E LR+    A + P+V + NI++D       
Sbjct: 370 KKDAAP-NLSTYNILIDMLCRAGKLDTAFE-LRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   F EM  +   P +I++ +L+       +   A KV+++ML D   + + + + 
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKML-DSDCRTNSIVYT 486

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            L++ +   G  E+  +I + M      P++    +  + +  A +P +   +++EIK R
Sbjct: 487 SLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKAR 546

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                              PD      L    ++A F  +  E+   M+E G   +   Y
Sbjct: 547 ----------------RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY 590



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 142/305 (46%), Gaps = 22/305 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P+      ++ G +   ++ +   ++  MR+ +     P    YTT++ A       D
Sbjct: 129 FGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFK---FRPAFSAYTTLIGAFSAVNHSD 185

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
               +  +M  +G       +  L++G+ ++ ++D A  LL EM   + ++ D+V YN+ 
Sbjct: 186 MMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEM-KSSSLDADIVLYNVC 244

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ID F  +     A  FF+E+ A G+ P +++YT+++     +++   A ++F+ + ++ R
Sbjct: 245 IDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR 304

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V     A+N ++ GY   G  +EA  ++ER +  G  P+V  Y  +   +    K  EAL
Sbjct: 305 VPC-TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEAL 363

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            +++E+K+             D  P L     L+D L     RA     A E+   M++ 
Sbjct: 364 KVFEEMKK-------------DAAPNLSTYNILIDMLC----RAGKLDTAFELRDSMQKA 406

Query: 509 GIPPN 513
           G+ PN
Sbjct: 407 GLFPN 411



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 115/297 (38%), Gaps = 54/297 (18%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           DT AYN V++     GK  K  QL ++M   G +P V+TY  +I   A+  R      + 
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E      I L +  + SL+    GFG +            GR D   +I E         
Sbjct: 646 EEAKSKRIELNVVIYSSLID---GFGKV------------GRIDEAYLILE--------- 681

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                      L+ K   PN   + +L+   +    +++ +   
Sbjct: 682 --------------------------ELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            +M+  +     P+ VTY  +++ L K    ++A     EM + G+  + I+Y  ++ G 
Sbjct: 716 QSMKELK---CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            +   I +A  L      +  + PD   YN +I+G    + +  A + F E R RG+
Sbjct: 773 AKAGNIAEAGALFDRFKANGGV-PDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 184/387 (47%), Gaps = 29/387 (7%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   + LF++M   GA    PD+ TY+++I  C RA R  L    L  +++ G  +   T
Sbjct: 73  PAAAVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAIT 132

Query: 131 FQSLVAAYVGFGDLEIAETIV-QAMRE--GRRDV--CKIIRELDLEDYSSENEGDDDDDD 185
           F  L+           A  IV + M E     DV  C I+    L+    EN        
Sbjct: 133 FAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTIL----LKGLCDENR-----SQ 183

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           E  E L   + +     P       P+   YTT++ G+  EG   D+ +         D 
Sbjct: 184 EALELLHMMADDRGGGSP-------PDVVSYTTVINGFFKEG---DSDKAYSTYHEMLDR 233

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P+ VTY+++++AL KA +MD+A +VL  M + GV  + +TYN +L GYC   Q  +A
Sbjct: 234 RISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 293

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
              L++M  D  +EP+VV+Y  L++          A   F+ M  RG+ P   +Y TL++
Sbjct: 294 IGTLKKMRSDG-VEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQ 352

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            +A        + + D M+R+  ++ D   +N+L+  Y +   V++A  +  +M+++G  
Sbjct: 353 GYATKGALVEMHALLDLMVRNG-IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 411

Query: 426 PNVATYGSLANGISLARKPGEALLLWK 452
           PNV  YG++ + +  +    +A+L ++
Sbjct: 412 PNVVCYGTVIDVLCKSGSVDDAMLYFE 438



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 142/345 (41%), Gaps = 58/345 (16%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V +   M R   +   PD  TY+ ++    +AG +D     L  + + G     IT+  L
Sbjct: 77  VSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAPL 136

Query: 293 LKGYCQQLQID------------------------------------KAKELLREMADD- 315
           LKG C   +                                      +A ELL  MADD 
Sbjct: 137 LKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDR 196

Query: 316 -AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
                PDVVSY  +I+GF    DS  A + ++EM  R I+P  ++Y++++ A   +    
Sbjct: 197 GGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMD 256

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A +V + M+++  V  D + +N ++ GYC  G  +EA   +++M+ +G  PNV TY SL
Sbjct: 257 KAMEVLNTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSL 315

Query: 435 ANGISLARKPGEALLLWKEIKERC--------EVKKEGVNADSDLPP-----------PL 475
            N +    +  EA  ++  + +R             +G      L              +
Sbjct: 316 MNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 375

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +PD  + + L     +     +A+ + + M +HG+ PN   Y  +
Sbjct: 376 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTV 420



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 18/252 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +Y  V+N     G   K    + +M +    P+V+TY+ +I    +A      +
Sbjct: 200 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAM 259

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +++ G+     T+ S++  Y   G  + A   ++ MR    +   ++    L +Y
Sbjct: 260 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP-NVVTYRSLMNY 318

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             +N G   +  ++F+ +    +              P+   Y TL++GY  +G + +  
Sbjct: 319 LCKN-GRCTEARKIFDSMTKRGLE-------------PDIATYRTLLQGYATKGALVEMH 364

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M R   N   PDH  +  ++ A  K   +D+A  V ++M + G+  N + Y  ++
Sbjct: 365 ALLDLMVR---NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVI 421

Query: 294 KGYCQQLQIDKA 305
              C+   +D A
Sbjct: 422 DVLCKSGSVDDA 433



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+V  + ++++ L  +G     E+ K+FD + KR             +PD A 
Sbjct: 300 MRSDGVEPNVVTYRSLMNYLCKNGR--CTEARKIFDSMTKR-----------GLEPDIAT 346

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L   A  G   +   L D M   G +PD   +N++I   A+  +    + V  ++ 
Sbjct: 347 YRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMR 406

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA 147
           + G+   +  + +++      G ++ A
Sbjct: 407 QHGLNPNVVCYGTVIDVLCKSGSVDDA 433


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 195/426 (45%), Gaps = 45/426 (10%)

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           TY VMI+   R     ++ ++L+++   GI  C   F  ++  Y   G  E A  +   +
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRI 135

Query: 155 RE-GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
            E G +   +I   L L+   SEN+         F+ + P   N   +  L+P  F    
Sbjct: 136 GEFGCKPTVRIYNHL-LDALLSENK---------FQMINPLYTNMKKD-GLIPNVFT--- 181

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  L+K      RV    ++   M    +    PD VTYTT+VS+L KAG +D AR+ 
Sbjct: 182 --YNILLKALCKNDRVDAAHKLFVEM---SNKGCPPDAVTYTTMVSSLCKAGKIDDARE- 235

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA   +  VP     YN L+ G C++ +I+ A +LL EM D+  ++P+VVSY+ +I+   
Sbjct: 236 LAGRFKPSVP----VYNALIDGMCKEGRIEVAIKLLGEMMDNG-VDPNVVSYSCIINSLC 290

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           +  +   A   F +M  RG      ++T L+K   +  +   A  ++  M++D   + ++
Sbjct: 291 VSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG-CEPNV 349

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW-K 452
           VA+N L+ G C  G +EEA ++ ++M+ +G  PNV TY  L +G + +     A   W +
Sbjct: 350 VAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNR 409

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
            I   C                 +P+      + D+  + + F +A  +V  M   G  P
Sbjct: 410 MISHGC-----------------RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTP 452

Query: 513 NKTKYK 518
           N   + 
Sbjct: 453 NTMTFN 458



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 211/524 (40%), Gaps = 124/524 (23%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RASRKH 110
            KP    YN +L+A  +  K +    L+  M + G  P+V TYN+++K LC   R    H
Sbjct: 140 CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAH 199

Query: 111 LLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
            L       +EM    C     T+ ++V++                       +CK    
Sbjct: 200 KL------FVEMSNKGCPPDAVTYTTMVSS-----------------------LCK---- 226

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                      G  DD  E                  L   F P+  +Y  L+ G   EG
Sbjct: 227 ----------AGKIDDARE------------------LAGRFKPSVPVYNALIDGMCKEG 258

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN-- 285
           R+   +++LG M    DN   P+ V+Y+ ++++L  +G+++ A  + A+M   G  AN  
Sbjct: 259 RIEVAIKLLGEMM---DNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIH 315

Query: 286 ---------------------------------RITYNILLKGYCQQLQIDKAKELLREM 312
                                             + YN L+ G C    +++A ++  +M
Sbjct: 316 TFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                + P+V +Y+ILIDGF    D  GA   +N M + G  P  ++YT ++     +S 
Sbjct: 376 QRSGCL-PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSM 434

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              AN + ++M  +     + + +N  ++G C  G VE A +++ERM+ +G  PN+ TY 
Sbjct: 435 FDQANSLVEKMTLEG-CTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            L + +    K  EA  L++EI+ R            +L P L     +L   +    RA
Sbjct: 494 ELLDALFRMNKYEEAFGLFQEIEAR------------NLQPNLVTYNTVLYGFS----RA 537

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
               +AL++       G  P+   Y  + +  + +    K A+Q
Sbjct: 538 GMMGEALQLFGKALVRGTAPDSITYNTM-IHAYCKQGKVKIAAQ 580



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 190/441 (43%), Gaps = 45/441 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDP-DIVSDSKPDTA 59
           M   G  P    ++T+VS L  +G                   K  D  ++    KP   
Sbjct: 205 MSNKGCPPDAVTYTTMVSSLCKAG-------------------KIDDARELAGRFKPSVP 245

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YNA+++     G+ +  ++L  +M + G  P+V++Y+ +I     +    L   +  ++
Sbjct: 246 VYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQM 305

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G    + TF  L+      G L  A  + + M +   D C    E ++  Y++   G
Sbjct: 306 FLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQ---DGC----EPNVVAYNTLIHG 358

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              +     E+ L           L      PN   Y+ L+ G+   G   D V      
Sbjct: 359 LCSNGS--LEEALQVCDQMQRSGCL------PNVTTYSILIDGFAKSG---DLVGASETW 407

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R   +   P+ VTYT +V  L K    D+A  ++ +MT  G   N +T+N  +KG C  
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGN 467

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +++ A +LL  M     + P++ +YN L+D    ++    A   F E+ AR + P  ++
Sbjct: 468 GRVEWAMKLLERMQGHGCL-PNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER- 418
           Y T++  F+ +     A ++F + L       D + +N ++  YC+ G V+ A +++ER 
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAP-DSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 419 --MKENGFYPNVATYGSLANG 437
             MKE  ++P++ TY SL  G
Sbjct: 586 SSMKE--WHPDIITYTSLIWG 604



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 175/420 (41%), Gaps = 66/420 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKL-FDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+ +G  P+V ++S +++ L  SG+      V+L F +  +   +  D +I         
Sbjct: 270 MMDNGVDPNVVSYSCIINSLCVSGN------VELAFALFAQMFLRGCDANI--------H 315

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLER 118
            +  ++  C   GK  + L L+  M + G +P+V+ YN +I  LC+  S +  L  V ++
Sbjct: 316 TFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQ-VCDQ 374

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           +   G    +TT+  L+  +   GDL  A ET  + +  G R    ++    + D   +N
Sbjct: 375 MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP--NVVTYTCMVDVLCKN 432

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML- 236
              D  +  V +  L                  PN+  + T +KG    GRV   +++L 
Sbjct: 433 SMFDQANSLVEKMTLEGC--------------TPNTMTFNTFIKGLCGNGRVEWAMKLLE 478

Query: 237 -------------------------------GAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                                          G  +  E     P+ VTY TV+    +AG
Sbjct: 479 RMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAG 538

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            M  A Q+  +    G   + ITYN ++  YC+Q ++  A +L+  ++   +  PD+++Y
Sbjct: 539 MMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITY 598

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             LI G     +   A+ F ++   +GI P   ++  L++ F  S        + D++LR
Sbjct: 599 TSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILR 658



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 116/272 (42%), Gaps = 33/272 (12%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGV-PANRITYNILLKGYCQQLQIDKAKELLREM 312
           +  +++   + GS ++A ++   +   G  P  RI YN LL     + +      L   M
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRI-YNHLLDALLSENKFQMINPLYTNM 170

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
             D  I P+V +YNIL+      D    A   F EM  +G  P  ++YTT++ +      
Sbjct: 171 KKDGLI-PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCK--- 226

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A K+ D      R K  +  +N L++G C+ G +E A +++  M +NG  PNV +Y 
Sbjct: 227 ---AGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYS 283

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            + N + ++     A  L+ ++  R      G +A+     PL              ++ 
Sbjct: 284 CIINSLCVSGNVELAFALFAQMFLR------GCDANIHTFTPL--------------IKG 323

Query: 493 AFFR----KALEIVACMEEHGIPPNKTKYKKI 520
            F R    +AL++   M + G  PN   Y  +
Sbjct: 324 CFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 177/400 (44%), Gaps = 36/400 (9%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           K+ + F     V   KP+   YN V+N     GK +   ++F  M +   KPD  TYN  
Sbjct: 234 KKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSF 293

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAM 154
           I    +  R      VL ++LE G+     T+ +L+      GDL+ A     E + + +
Sbjct: 294 ISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGI 353

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
                    +I  L LE    E E   D   E+ EK                    P+  
Sbjct: 354 VASVFTYNLLIHALFLEKRIEEAE---DMIKEMREK-----------------GVEPDVV 393

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y   + GY   G     + +   M  +      P   TYT+++    K   M  A +  
Sbjct: 394 TYNIQINGYCRCGNAKKALSLFDEMVEKN---IRPTVETYTSLIDVFGKRNRMSEAEEKF 450

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +  + G+  + I +N L+ G+C    ID+A +LL+EM D+AK+ PD V++N L+ G+  
Sbjct: 451 KKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEM-DNAKVVPDEVTFNTLMQGYCR 509

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKV 391
                 A    +EM+ RGI P  ISY TL+  ++     K A +VFDEML    DP    
Sbjct: 510 ERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDP---- 565

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
            ++ +N L++GY ++G  + A+ ++  M+  G  P+ +TY
Sbjct: 566 TLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/537 (21%), Positives = 234/537 (43%), Gaps = 81/537 (15%)

Query: 9   HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD-------IVSDSK--PDTA 59
           H    + + + L+ + +   V++  +FD+++    +F  PD       ++ +++  P T 
Sbjct: 124 HTTTPTVIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTE 183

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
             N++L+    L K K    ++++M +   K  ++T+N+MI +  R  +       +  +
Sbjct: 184 TCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHM 243

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G+   + T+ +++  Y   G  E A  I + M++                       
Sbjct: 244 EVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKD----------------------- 280

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                      K   P+   Y + +     E R+ +     G +
Sbjct: 281 ---------------------------KNLKPDCYTYNSFISRLCKERRIEEAS---GVL 310

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            +  ++   P+ VTY  ++      G +D+A     EM   G+ A+  TYN+L+     +
Sbjct: 311 CKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLE 370

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +I++A+++++EM +   +EPDVV+YNI I+G+    ++  AL+ F+EM  + I PT  +
Sbjct: 371 KRIEEAEDMIKEMREKG-VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVET 429

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT+L+  F   ++   A + F + +++  +  DI+ +N L++G+C  G ++ A ++++ M
Sbjct: 430 YTSLIDVFGKRNRMSEAEEKFKKSIKEGMLP-DIIMFNALIDGHCVNGNIDRAFQLLKEM 488

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
                 P+  T+ +L  G    RK  EA  L  E+KER                 +KPD 
Sbjct: 489 DNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKER----------------GIKPDH 532

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
              + L     +    + ALE+   M   G  P    Y  + ++ +S++  + HA +
Sbjct: 533 ISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNAL-IQGYSKIGEADHAEE 588



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 152/361 (42%), Gaps = 80/361 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVV------KR 41
           +L SG +P+   ++ ++      GD              G V SV  +++++      KR
Sbjct: 313 LLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKR 372

Query: 42  VRKFSDPDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
           + +  D  ++ + +     PD   YN  +N     G  KK L LFD+M E   +P V TY
Sbjct: 373 IEEAED--MIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETY 430

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
             +I +  + +R        ++ ++ G+   +  F +L+  +   G+++ A  +++ M  
Sbjct: 431 TSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEM-- 488

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
              D  K++                                             P+   +
Sbjct: 489 ---DNAKVV---------------------------------------------PDEVTF 500

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            TLM+GY  E +V +  ++L  M+ +      PDH++Y T++S   K G M  A +V  E
Sbjct: 501 NTLMQGYCRERKVEEAKKLLDEMKER---GIKPDHISYNTLISGYSKRGDMKDALEVFDE 557

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M  +G     +TYN L++GY +  + D A+ELLREM     I PD  +Y  +I+     D
Sbjct: 558 MLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKG-ITPDDSTYLYVIEAMKTND 616

Query: 337 D 337
           D
Sbjct: 617 D 617


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 133/573 (23%), Positives = 229/573 (39%), Gaps = 99/573 (17%)

Query: 11  KAWSTVVSRLAASGDDGPVESVKLFDVVVK---------RVRKFSDPDIVSDSKPDTAAY 61
           K W  V S  A     G   +++ ++V++K         + R F +       KPD  +Y
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSY 187

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           + V+N  A  GK    L+LFD+M E    PDV  YN++I    +     + + + +++LE
Sbjct: 188 STVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLE 247

Query: 122 -MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
              +   + T   +++     G ++    I   M++  R       E DL  YSS     
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNER-------EKDLYTYSSLIHGL 300

Query: 177 -NEGDDDDDDEVFEKLLP------------------------------------NSINPS 199
            +EG+ D  + VF +L+                                     NS+N  
Sbjct: 301 CDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIV 360

Query: 200 SEPPLL--------------------PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           S   L+                     K +A ++  Y   + G    G V+   + LG M
Sbjct: 361 SYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVN---KALGVM 417

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +  E    H D   Y +++  L K   ++ A  ++ EM++ GV  N    N L+ G  + 
Sbjct: 418 QEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRD 477

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++  A  L+R M  +  + P VVSYNILI G         A  F  EM   G+ P   +
Sbjct: 478 SRLSDASLLMRGMGKNGCL-PTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKT 536

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+ L+       + +LA +++ + L+   ++ D++  N+L+ G C +G +++A  ++  M
Sbjct: 537 YSILLGGLCRDRKIELALELWHQFLQSG-LEPDVMMHNILIHGLCSVGKLDDAMTVMANM 595

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +      N+ TY +L  G    R    A ++W            G      L P +    
Sbjct: 596 EHRNCTANLVTYNTLMEGYFKVRDSNRATVIW------------GYMYKMGLQPDIISYN 643

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
            +L  L  +C R ++   A+E       HGI P
Sbjct: 644 TILKGLC-LCHRVSY---AIEFFDDARNHGIFP 672



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/480 (22%), Positives = 204/480 (42%), Gaps = 42/480 (8%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           V KR+R+      +   +P   +YN +LNA     +  K   LF      G  P++ TYN
Sbjct: 100 VFKRMRE------IFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
           V+IK+  +          L  + + G    + ++ +++      G L+ A  +   M E 
Sbjct: 154 VLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSER 213

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
           R         + ++ +  E   D     ++++KLL +S            +  PN + + 
Sbjct: 214 RVAPDVTCYNILIDGFLKEK--DHKMAMQLWDKLLEDS------------SVYPNVKTHN 259

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            ++ G    GRV D +++   M++ E      D  TY++++  L   G++D+A  V  E+
Sbjct: 260 IMISGLSKCGRVDDCLKIWDRMKQNE---REKDLYTYSSLIHGLCDEGNVDKAESVFNEL 316

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
                  + +TYN +L G+C+  +I ++ EL R M     +  ++VSYNILI G +    
Sbjct: 317 VERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSV--NIVSYNILIKGLLENGK 374

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   +  M A+G A    +Y   +    ++     A  V  E +      +D+ A+ 
Sbjct: 375 IDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQE-VESKGGHLDVYAYA 433

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +++  C+   +EEA  +++ M ++G   N     +L  G+    +  +A LL +     
Sbjct: 434 SIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMR----- 488

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                 G+  +  LP  +  +      +  +C  A  F +A   V  M E+G+ P+   Y
Sbjct: 489 ------GMGKNGCLPTVVSYN----ILICGLC-EAGKFGEASAFVKEMLENGLKPDLKTY 537



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 198/460 (43%), Gaps = 49/460 (10%)

Query: 4   SGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           S   P+VK  + ++S L+  G  DD     +K++D    R+++       ++ + D   Y
Sbjct: 249 SSVYPNVKTHNIMISGLSKCGRVDD----CLKIWD----RMKQ-------NEREKDLYTY 293

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERIL 120
           +++++   + G   K   +F+++ E  A  DV+TYN M+   C     K  L   L RI+
Sbjct: 294 SSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLE--LWRIM 351

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDLEDYSS 175
           E   ++ + ++  L+   +  G ++ A  I + M               I  L +  Y +
Sbjct: 352 EQRNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVN 411

Query: 176 ---------ENEGDDDD--------DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                    E++G   D        D    ++ L  + N   E  +       NS +   
Sbjct: 412 KALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKE--MSKHGVELNSHVCNA 469

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G + + R+SD   +   MR    N   P  V+Y  ++  L +AG    A   + EM 
Sbjct: 470 LIGGLIRDSRLSDASLL---MRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEML 526

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+  +  TY+ILL G C+  +I+ A EL  +      +EPDV+ +NILI G   +   
Sbjct: 527 ENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSG-LEPDVMMHNILIHGLCSVGKL 585

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A+T    M  R      ++Y TLM+ +        A  ++  M +   ++ DI+++N 
Sbjct: 586 DDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYK-MGLQPDIISYNT 644

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +++G C    V  A    +  + +G +P V T+  L   +
Sbjct: 645 ILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAV 684



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 92/201 (45%), Gaps = 37/201 (18%)

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID------------DSA 339
           ++K Y +    D+A ++ + M +    EP + SYN L++ F+               ++A
Sbjct: 84  VIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETA 143

Query: 340 G-----------------------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           G                       A  F N M   G  P   SY+T++   A + +   A
Sbjct: 144 GVAPNLQTYNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDA 203

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYPNVATYGSLA 435
            ++FDEM  + RV  D+  +N+L++G+ +    + A ++ +++ E+   YPNV T+  + 
Sbjct: 204 LELFDEM-SERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMI 262

Query: 436 NGISLARKPGEALLLWKEIKE 456
           +G+S   +  + L +W  +K+
Sbjct: 263 SGLSKCGRVDDCLKIWDRMKQ 283


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 195/426 (45%), Gaps = 45/426 (10%)

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           TY VMI+   R     ++ ++L+++   GI  C   F  ++  Y   G  E A  +   +
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRI 135

Query: 155 RE-GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
            E G +   +I   L L+   SEN+         F+ + P   N   +  L+P  F    
Sbjct: 136 GEFGCKPTVRIYNHL-LDALLSENK---------FQMINPLYTNMKKD-GLIPNVFT--- 181

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  L+K      RV    ++   M    +    PD VTYTT+VS+L KAG +D AR+ 
Sbjct: 182 --YNILLKALCKNDRVDAAHKLFVEM---SNKGCPPDAVTYTTMVSSLCKAGKIDDARE- 235

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           LA   +  VP     YN L+ G C++ +I+ A +LL EM D+  ++P+VVSY+ +I+   
Sbjct: 236 LAGRFKPSVP----VYNALIDGMCKEGRIEVAIKLLGEMMDNG-VDPNVVSYSCIINSLC 290

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           +  +   A   F +M  RG      ++T L+K   +  +   A  ++  M++D   + ++
Sbjct: 291 VSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG-CEPNV 349

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW-K 452
           VA+N L+ G C  G +EEA ++ ++M+ +G  PNV TY  L +G + +     A   W +
Sbjct: 350 VAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNR 409

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
            I   C                 +P+      + D+  + + F +A  +V  M   G  P
Sbjct: 410 MISHGC-----------------RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTP 452

Query: 513 NKTKYK 518
           N   + 
Sbjct: 453 NTITFN 458



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 211/524 (40%), Gaps = 124/524 (23%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RASRKH 110
            KP    YN +L+A  +  K +    L+  M + G  P+V TYN+++K LC   R    H
Sbjct: 140 CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAH 199

Query: 111 LLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
            L       +EM    C     T+ ++V++                       +CK    
Sbjct: 200 KL------FVEMSNKGCPPDAVTYTTMVSS-----------------------LCK---- 226

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                      G  DD  E                  L   F P+  +Y  L+ G   EG
Sbjct: 227 ----------AGKIDDARE------------------LAGRFKPSVPVYNALIDGMCKEG 258

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN-- 285
           R+   +++LG M    DN   P+ V+Y+ ++++L  +G+++ A  + A+M   G  AN  
Sbjct: 259 RIEVAIKLLGEMM---DNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIH 315

Query: 286 ---------------------------------RITYNILLKGYCQQLQIDKAKELLREM 312
                                             + YN L+ G C    +++A ++  +M
Sbjct: 316 TFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                + P+V +Y+ILIDGF    D  GA   +N M + G  P  ++YT ++     +S 
Sbjct: 376 QRSGCL-PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSM 434

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              AN + ++M  +     + + +N  ++G C  G VE A +++ERM+ +G  PN+ TY 
Sbjct: 435 FDQANSLVEKMTLEG-CTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            L + +    K  EA  L++EI+ R            +L P L     +L   +    RA
Sbjct: 494 ELLDALFRMNKYEEAFGLFQEIEAR------------NLQPNLVTYNTVLYGFS----RA 537

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
               +AL++       G  P+   Y  + +  + +    K A+Q
Sbjct: 538 GMMGEALQLFGKALVRGTAPDSITYNTM-IHAYCKQGKVKIAAQ 580



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 190/441 (43%), Gaps = 45/441 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDP-DIVSDSKPDTA 59
           M   G  P    ++T+VS L  +G                   K  D  ++    KP   
Sbjct: 205 MSNKGCPPDAVTYTTMVSSLCKAG-------------------KIDDARELAGRFKPSVP 245

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YNA+++     G+ +  ++L  +M + G  P+V++Y+ +I     +    L   +  ++
Sbjct: 246 VYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQM 305

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G    + TF  L+      G L  A  + + M +   D C    E ++  Y++   G
Sbjct: 306 FLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQ---DGC----EPNVVAYNTLIHG 358

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              +     E+ L           L      PN   Y+ L+ G+   G   D V      
Sbjct: 359 LCSNGS--LEEALQVCDQMQRSGCL------PNVTTYSILIDGFAKSG---DLVGASETW 407

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R   +   P+ VTYT +V  L K    D+A  ++ +MT  G   N IT+N  +KG C  
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGN 467

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +++ A +LL  M     + P++ +YN L+D    ++    A   F E+ AR + P  ++
Sbjct: 468 GRVEWAMKLLERMQGHGCL-PNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER- 418
           Y T++  F+ +     A ++F + L       D + +N ++  YC+ G V+ A +++ER 
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAP-DSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 419 --MKENGFYPNVATYGSLANG 437
             MKE  ++P++ TY SL  G
Sbjct: 586 SSMKE--WHPDIITYTSLIWG 604



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 175/420 (41%), Gaps = 66/420 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKL-FDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+ +G  P+V ++S +++ L  SG+      V+L F +  +   +  D +I         
Sbjct: 270 MMDNGVDPNVVSYSCIINSLCVSGN------VELAFALFAQMFLRGCDANI--------H 315

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLER 118
            +  ++  C   GK  + L L+  M + G +P+V+ YN +I  LC+  S +  L  V ++
Sbjct: 316 TFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQ-VCDQ 374

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           +   G    +TT+  L+  +   GDL  A ET  + +  G R    ++    + D   +N
Sbjct: 375 MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP--NVVTYTCMVDVLCKN 432

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML- 236
              D  +  V +  L                  PN+  + T +KG    GRV   +++L 
Sbjct: 433 SMFDQANSLVEKMTLEGC--------------TPNTITFNTFIKGLCGNGRVEWAMKLLE 478

Query: 237 -------------------------------GAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                                          G  +  E     P+ VTY TV+    +AG
Sbjct: 479 RMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAG 538

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            M  A Q+  +    G   + ITYN ++  YC+Q ++  A +L+  ++   +  PD+++Y
Sbjct: 539 MMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITY 598

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             LI G     +   A+ F ++   +GI P   ++  L++ F  S        + D++LR
Sbjct: 599 TSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILR 658



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 116/272 (42%), Gaps = 33/272 (12%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGV-PANRITYNILLKGYCQQLQIDKAKELLREM 312
           +  +++   + GS ++A ++   +   G  P  RI YN LL     + +      L   M
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRI-YNHLLDALLSENKFQMINPLYTNM 170

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
             D  I P+V +YNIL+      D    A   F EM  +G  P  ++YTT++ +      
Sbjct: 171 KKDGLI-PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCK--- 226

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A K+ D      R K  +  +N L++G C+ G +E A +++  M +NG  PNV +Y 
Sbjct: 227 ---AGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYS 283

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            + N + ++     A  L+ ++  R      G +A+     PL              ++ 
Sbjct: 284 CIINSLCVSGNVELAFALFAQMFLR------GCDANIHTFTPL--------------IKG 323

Query: 493 AFFR----KALEIVACMEEHGIPPNKTKYKKI 520
            F R    +AL++   M + G  PN   Y  +
Sbjct: 324 CFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 215/502 (42%), Gaps = 74/502 (14%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           SG +P V  ++ ++S    +G+     SV                D +S S PD   YN 
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSV---------------LDRMSVS-PDVVTYNT 209

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +L +  + GK K+ +++ D+M +    PDV+TY ++I+   R S     + +L+ + + G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRG 269

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEGDDD 182
            T  + T+  LV                   +EGR D   K + ++              
Sbjct: 270 CTPDVVTYNVLVNGIC---------------KEGRLDEAIKFLNDM-------------- 300

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                          PSS          PN   +  +++   + GR  D  ++L  M R+
Sbjct: 301 ---------------PSS-------GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 P  VT+  +++ L + G + RA  +L +M + G   N ++YN LL G+C++ ++
Sbjct: 339 ---GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D+A E L  M       PD+V+YN ++           A+   N++ ++G +P  I+Y T
Sbjct: 396 DRAIEYLERMVSRG-CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++   A + +   A K+ DEM R   +K D + ++ LV G  R G V+EA +     +  
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEM-RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 423 GFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
           G  PN  T+ S+  G+   R+   A+  L   I   C+  +       +        +E 
Sbjct: 514 GVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEA 573

Query: 482 LDALADICVRAAFFRKALEIVA 503
           L+ L ++C +    R + E VA
Sbjct: 574 LELLNELCNKGLMKRSSAEQVA 595



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 192/455 (42%), Gaps = 43/455 (9%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           G+ ++  +  + M   G  PD++    +I+   R  +      +LE +   G    + T+
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITY 175

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVC--KIIRELDLEDYSSENEGDDDDDDEVFE 189
             +++ Y   G++  A +++  M      V    I+R L        + G      EV +
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLC-------DSGKLKQAMEVLD 228

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           +             +L +   P+   YT L++    +  V   +++L  MR   D    P
Sbjct: 229 R-------------MLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMR---DRGCTP 272

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D VTY  +V+ + K G +D A + L +M   G   N IT+NI+L+  C   +   A++LL
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M       P VV++NILI+          A+    +M   G  P  +SY  L+  F  
Sbjct: 333 ADMLRKG-FSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCK 391

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             +   A +  + M+       DIV +N ++   C+ G VE+A  I+ ++   G  P + 
Sbjct: 392 EKKMDRAIEYLERMVSRG-CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY ++ +G++ A K G+A+ L  E++ +                 LKPD     +L    
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAK----------------DLKPDTITYSSLVGGL 494

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            R     +A++     E  G+ PN   +  I + +
Sbjct: 495 SREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGL 529


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/542 (22%), Positives = 236/542 (43%), Gaps = 89/542 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P +  +S +++ L  +G     E   LF + + R             K D   
Sbjct: 301 MIEKGIVPDLVIYSILINGLFRAGK--LEEGNSLFSMALAR-----------GVKMDVVI 347

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++++++A   +G   K ++++ +M + G  P+V+TY+++I    R  R      V  +IL
Sbjct: 348 FSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQIL 407

Query: 121 EMGITLCMTTFQSLVAAYV-------GFG------------DLEIAETIVQAM-REGRRD 160
           + G+   + T+ SL+  +        GFG            D+ +   ++  + R+G  D
Sbjct: 408 KQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMD 467

Query: 161 ------VCKIIRELDLEDYSSENEGDD-------DDDDEVF-----EKLLPNSINPSSEP 202
                    + R L L +Y      D         D  +++      K++P+ +  +   
Sbjct: 468 EALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLV 527

Query: 203 -----------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                             LL K F+P+  IY TL+ G+  +    D    L   +  + N
Sbjct: 528 KGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKK---RDPATGLQIFKLMQSN 584

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD   Y  +++   + G ++   ++L E+ + G+  + +TYN ++ GYC      KA
Sbjct: 585 GIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKA 644

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +L  E+    + +P+ +++ ILID +        A+  F+ M  RG  P  ++Y+ L+ 
Sbjct: 645 IKLF-EVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLID 703

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            +  +   + A +++++ML D RV  +IV++++L++G C+ GL+EEA    +        
Sbjct: 704 GYFKTENTESAFELYEKMLGD-RVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLL 762

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           P+V  YG L  G     +  EA++L+                D  L   + PD+ L  AL
Sbjct: 763 PDVIAYGILIRGYCKVGRLAEAMMLY----------------DHMLVNGIMPDDLLQKAL 806

Query: 486 AD 487
           A+
Sbjct: 807 AE 808



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 203/475 (42%), Gaps = 40/475 (8%)

Query: 45  FSDPDIVSDSKPDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           F D  + S   P+   ++ ++N  C  L   + F  L++ M E G  PD++ Y+++I   
Sbjct: 262 FFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAF-SLYNLMIEKGIVPDLVIYSILINGL 320

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVC 162
            RA +      +    L  G+ + +  F S++ AYV  GDL  A E   + ++EG     
Sbjct: 321 FRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISP-- 378

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
            ++    L +    N G   +   VF ++L   + PS                Y++L+ G
Sbjct: 379 NVVTYSILINGLCRN-GRVLEACGVFGQILKQGLEPS-------------VLTYSSLIDG 424

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           +     + D   + G M R+      PD V  + +++ L + G MD A +   +  + G+
Sbjct: 425 FCKSENLRDGFGLYGIMLRK---GHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N   +N L+ G C +L+  +    +  +    K+ PDVV+Y +L+ G         AL
Sbjct: 482 TLNNYLFNALIDG-CFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEAL 540

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F ++  +G +P  I Y TL+  F     P    ++F ++++   +  DI  +N+L+  
Sbjct: 541 ALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIF-KLMQSNGIFPDICIYNVLINM 599

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
           + R G VE    ++  + + G  P++ TY ++  G    +   +A+ L+       EV K
Sbjct: 600 FFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLF-------EVLK 652

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            G           +P+      L D   +      A+ I + M E G  PN   Y
Sbjct: 653 CGRT---------QPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTY 698



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 151/364 (41%), Gaps = 56/364 (15%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG-AMRRQEDNASHPDHVTYTTVVSALV 262
           ++ K   P+  IY+ L+ G    G++ +   +   A+ R        D V +++++ A V
Sbjct: 301 MIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALAR----GVKMDVVIFSSIMDAYV 356

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           + G + +A +V   M + G+  N +TY+IL+ G C+  ++ +A  +  ++     +EP V
Sbjct: 357 RVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQG-LEPSV 415

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-------------- 368
           ++Y+ LIDGF   ++       +  M  +G  P  +  + L+   +              
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475

Query: 369 -----LSSQPKLANKVFDEMLRDPR---------------VKVDIVAWNMLVEGYCRMGL 408
                L+    L N + D   R  R               V  D+V + +LV+G    G 
Sbjct: 476 AVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGR 535

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           ++EA  +  ++ + GF P+   Y +L +G    R P   L ++K ++             
Sbjct: 536 LDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSN----------- 584

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
                 + PD  + + L ++  R       LE++  + ++G+ P+   Y  +     S  
Sbjct: 585 -----GIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLK 639

Query: 529 FTSK 532
             SK
Sbjct: 640 IFSK 643



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 150/368 (40%), Gaps = 67/368 (18%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           +P V  ++ +V  LA  G     E++ LF  ++K+   FS         PD   Y  +++
Sbjct: 517 IPDVVTYTVLVKGLAEQGRLD--EALALFFQLLKK--GFS---------PDHIIYCTLID 563

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                  P   LQ+F  M   G  PD+  YNV+I +  R      ++ +L  I++ G+  
Sbjct: 564 GFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEP 623

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+ +++  Y        A  + + ++ GR                            
Sbjct: 624 DIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQ-------------------------- 657

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
                 PN+I                   +T L+  Y  +GR+ D + +  +M  +    
Sbjct: 658 ------PNAIT------------------FTILIDAYCKDGRMDDAMLIFSSMLER---G 690

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P+ +TY+ ++    K  + + A ++  +M    V  N ++Y+IL+ G C++  +++A 
Sbjct: 691 PEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEA- 749

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            L  + A    + PDV++Y ILI G+  +   A A+  ++ M   GI P  +    L + 
Sbjct: 750 SLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEY 809

Query: 367 FALSSQPK 374
               SQ K
Sbjct: 810 GFQDSQAK 817



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 30/311 (9%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + F P +R++  ++  + N       + +LG       N        Y+ ++    + G 
Sbjct: 103 RMFDPATRVFDRMVGQFGN-------LEVLGEFHGSFRNYGSNPSTVYSFLLHCYCRNGM 155

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +DRA    A M+++GV  +    + +L       +ID   E   EM     +      Y 
Sbjct: 156 VDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKGLGV------YE 209

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            + + F+   +    L F   +  RG+ P  +    ++K   + +Q  +A+  FD M+R 
Sbjct: 210 FVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRS 269

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
                ++V ++ L+  YC+   ++EA  +   M E G  P++  Y  L NG+  A K  E
Sbjct: 270 GP-SPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEE 328

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
              L+     R                 +K D  +  ++ D  VR     KA+E+   M 
Sbjct: 329 GNSLFSMALAR----------------GVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRML 372

Query: 507 EHGIPPNKTKY 517
           + GI PN   Y
Sbjct: 373 KEGISPNVVTY 383



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 35/275 (12%)

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH------------PDHV-------- 252
           S +Y+ L+  Y   G V   V     M +   + SH             D +        
Sbjct: 140 STVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYE 199

Query: 253 -------TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
                   Y  V ++ +K G +++       +   G+    +  N +LKG C   QI  A
Sbjct: 200 EMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVA 259

Query: 306 KELLREMADDAKIEPDVVSYNILIDGF---ILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            +    M       P++V+++ LI+ +   + +D+   A + +N M  +GI P  + Y+ 
Sbjct: 260 SDFFDMMVRSGP-SPNLVTFSTLINVYCKELRLDE---AFSLYNLMIEKGIVPDLVIYSI 315

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+     + + +  N +F   L    VK+D+V ++ +++ Y R+G + +A  +  RM + 
Sbjct: 316 LINGLFRAGKLEEGNSLFSMALARG-VKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE 374

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G  PNV TY  L NG+    +  EA  ++ +I ++
Sbjct: 375 GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQ 409


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 191/458 (41%), Gaps = 87/458 (18%)

Query: 72  GKPKKFLQLFDQM---HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
           G+ +K ++ FD M       ++ D +T  ++  L  R  R      + +R +  G    +
Sbjct: 97  GQWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSL-GRLGRSDWAQLIFDRAVGAGFGNNV 155

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF 188
             + SL+ AY   G L  A  I +AM+     VCK                         
Sbjct: 156 FVYSSLICAYGRSGKLAKAVEIFEAMKV----VCK------------------------- 186

Query: 189 EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
                                 PN  +Y  ++      G     +R+   M  Q      
Sbjct: 187 ----------------------PNLVVYNAVIDACSKGGDYPTALRIFREMLEQ---GMS 221

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD +T+ T++SA  +A   +   ++ AEM   G+  + +TYN L+  YC+  Q+     L
Sbjct: 222 PDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAAL 281

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           +  MA  + IEP V++Y+ +IDG+  +  +  A+  F EMR + + P  I Y T++   A
Sbjct: 282 METMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHA 341

Query: 369 LSSQPKLANKVFDE------MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
                +L N  FDE       + +     DIV +N L++ Y + G   EA  ++E MK+ 
Sbjct: 342 -----RLGN--FDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQR 394

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G  PN+ TY +L +         +A+ L++      +VKK G          L+PD  L 
Sbjct: 395 GASPNILTYSALIDAYCKHGFHRDAMALFQ------DVKKAG----------LQPDVVLY 438

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L D C +     +AL ++  M ++GI PN   Y  +
Sbjct: 439 STLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSL 476



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 168/426 (39%), Gaps = 95/426 (22%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   YNAV++AC+  G     L++F +M E G  PD +T+N +I    RA+R      
Sbjct: 186 KPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDR 245

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +   + E GI     T+ +L+A Y   G + +   +++ M +                  
Sbjct: 246 IFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAK------------------ 287

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                 +   EP ++          Y+T++ GY   G   + + 
Sbjct: 288 ----------------------SSGIEPSVI---------TYSTMIDGYAKLGLAHEAIA 316

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   MR Q      PD + Y T+V    + G+ D A  +   M   G   + +TYN LL 
Sbjct: 317 LFQEMRNQN---VEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLD 373

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            Y +Q +  +A  LL EM       P++++Y+ LID +        A+  F +++  G+ 
Sbjct: 374 SYGKQGKFREAMSLLEEMKQRGA-SPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQ 432

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR--------- 405
           P  + Y+TL+     +  P  A  + +EM  D  ++ +++ +N L++ Y R         
Sbjct: 433 PDVVLYSTLVDGCCKNGSPDEALALLEEM-ADNGIRPNVITYNSLLDAYGRQCLMVRKTF 491

Query: 406 --------------------------------MGLVEEAKRIIERMKENGFYPNVATYGS 433
                                             LV  A R+   M +NG  PNV T+ S
Sbjct: 492 PKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSS 551

Query: 434 LANGIS 439
           + N  S
Sbjct: 552 ILNACS 557



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 153/400 (38%), Gaps = 81/400 (20%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  +P    Y+ +++  A LG   + + LF +M     +PD + YN M+ + AR      
Sbjct: 289 SGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDE 348

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              +   + E G    + T+ +L+ +Y   G    A ++++ M++               
Sbjct: 349 AHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQ--------------- 393

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                              +  +PN   Y+ L+  Y   G   D
Sbjct: 394 -----------------------------------RGASPNILTYSALIDAYCKHGFHRD 418

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + +   +++       PD V Y+T+V    K GS D A  +L EM   G+  N ITYN 
Sbjct: 419 AMALFQDVKKA---GLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNS 475

Query: 292 LLKGYCQQ-LQIDKAKELLR-------------EMADDAKIEPDVVSYNILIDGFILIDD 337
           LL  Y +Q L + K    LR              M DD +   D      L+        
Sbjct: 476 LLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQALV-------- 527

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAW 396
              A   F EM   G+ P  +++++++ A +  +  + A+ + + M + D RV       
Sbjct: 528 -LAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASNLLEAMRVFDGRV---YGVT 583

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
           + L+ G+ R+ +  +A+ +   +   G    VA Y +L +
Sbjct: 584 HGLLMGF-RIRVWRDAETLFNELTTLGHNTAVAFYNALTD 622


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 211/498 (42%), Gaps = 79/498 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P V   ST++  L+ +G  G   +V++F  +  R              P+   
Sbjct: 117 MTSHGCVPDVVTLSTMIDGLSKAGRIGA--AVRIFKSMEAR-----------GLAPNEVV 163

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+A+++      K    L++  QM +    PD +TYNV+I  LC     +    F  + +
Sbjct: 164 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAF-FDEM 222

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS---- 175
           LE G    + T+  L++ +   G+ + A   +   +E   + C I    D+  Y++    
Sbjct: 223 LEAGCKPDVYTYNILISGFCKAGNTDAASHSLA--QETTINGCTI----DIHTYTAIVDW 276

Query: 176 -ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                  ++   + EK+  N   P+                Y  L+ G    GR+ + + 
Sbjct: 277 LAKNKKIEEAVALMEKITANGCTPTIAT-------------YNALLNGLCKMGRLEEAID 323

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L   R+  DN   PD VTYT+++  L K      A ++  EM   G+  + + Y  L++
Sbjct: 324 LL---RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIR 380

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
              Q  +I +A  + + M     + PDVV+ + +IDG         A+  F  M ARG+A
Sbjct: 381 ELLQTGKIPQASSVYKTMTSHGCV-PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 439

Query: 355 PTKISYTTLM--------------------KAFAL---------------SSQPKLANKV 379
           P ++ Y+ L+                    KAF                 S   + A   
Sbjct: 440 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 499

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           FDEML +   K D+  +N+L+ G+C+ G  + A  + + M  +    NV TYG+L +G+ 
Sbjct: 500 FDEML-EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLC 558

Query: 440 LARKPGEALLLWKEIKER 457
             R+  +A L ++ +KER
Sbjct: 559 KRRQLTKASLYFQHMKER 576



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 172/406 (42%), Gaps = 60/406 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA----SRKHL 111
           PDT  YN +++     G  +     FD+M E G KPDV TYN++I    +A    +  H 
Sbjct: 194 PDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHS 253

Query: 112 L--------------------------------VFVLERILEMGITLCMTTFQSLVAAYV 139
           L                                V ++E+I   G T  + T+ +L+    
Sbjct: 254 LAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLC 313

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSIN 197
             G LE A   +  +R+   + C      D+  Y+S  +  G +    E ++     ++ 
Sbjct: 314 KMGRLEEA---IDLLRKIVDNGCTP----DVVTYTSLIDGLGKEKRSFEAYKLFKEMAL- 365

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                    +  A ++  YT L++  +  G++     +   M     +   PD VT +T+
Sbjct: 366 ---------RGLALDTVCYTALIRELLQTGKIPQASSVYKTM---TSHGCVPDVVTLSTM 413

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           +  L KAG +  A ++   M   G+  N + Y+ L+ G C+  ++D A E+L +M   A 
Sbjct: 414 IDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM-KKAF 472

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
             PD ++YNILIDG     D   A  FF+EM   G  P   +Y  L+  F  +     A 
Sbjct: 473 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 532

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
            VFD+M    R   ++V +  L+ G C+   + +A    + MKE G
Sbjct: 533 GVFDDM-SSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/500 (22%), Positives = 205/500 (41%), Gaps = 76/500 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A YNA+LN    +G+ ++ + L  ++ + G  PDV+TY  +I    +  R      +
Sbjct: 19  PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 78

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDY 173
            + +   G+ L    + +L+   +  G +  A ++ + M       DV  +   +D    
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID---- 134

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                G       +F+              +  +  APN  +Y+ L+ G     ++   +
Sbjct: 135 GLSKAGRIGAAVRIFK-------------SMEARGLAPNEVVYSALIHGLCKARKMDCAL 181

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ML  M++       PD +TY  ++  L K+G ++ AR    EM   G   +  TYNIL+
Sbjct: 182 EMLAQMKKA---FCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 238

Query: 294 KGYCQQLQIDKAKELLRE--------------------MADDAKIE-------------- 319
            G+C+    D A   L +                    +A + KIE              
Sbjct: 239 SGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC 298

Query: 320 -PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            P + +YN L++G   +     A+    ++   G  P  ++YT+L+       +   A K
Sbjct: 299 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 358

Query: 379 VFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +F EM LR   + +D V +  L+    + G + +A  + + M  +G  P+V T  ++ +G
Sbjct: 359 LFKEMALRG--LALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +S A + G A+ ++K ++ R                 L P+E +  AL     +A     
Sbjct: 417 LSKAGRIGAAVRIFKSMEAR----------------GLAPNEVVYSALIHGLCKARKMDC 460

Query: 498 ALEIVACMEEHGIPPNKTKY 517
           ALE++A M++    P+   Y
Sbjct: 461 ALEMLAQMKKAFCTPDTITY 480



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 2/190 (1%)

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           ++ A  ++ ++T  G      TYN LL G C+  ++++A +LLR++ D+    PDVV+Y 
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG-CTPDVVTYT 60

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LIDG      S  A   F EM  RG+A   + YT L++    + +   A+ V+  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V  D+V  + +++G  + G +  A RI + M+  G  PN   Y +L +G+  ARK   
Sbjct: 121 GCVP-DVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 179

Query: 447 ALLLWKEIKE 456
           AL +  ++K+
Sbjct: 180 ALEMLAQMKK 189



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 101/218 (46%), Gaps = 20/218 (9%)

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I++A  L+ ++  +    P + +YN L++G   +     A+    ++   G  P  ++Y
Sbjct: 1   KIEEAVALMEKITANG-CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTY 59

Query: 361 TTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           T+L+       +   A K+F EM LR   + +D V +  L+    + G + +A  + + M
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRG--LALDTVCYTALIRELLQTGKIPQASSVYKTM 117

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
             +G  P+V T  ++ +G+S A + G A+ ++K ++ R                 L P+E
Sbjct: 118 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEAR----------------GLAPNE 161

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            +  AL     +A     ALE++A M++    P+   Y
Sbjct: 162 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 199


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 191/458 (41%), Gaps = 87/458 (18%)

Query: 72  GKPKKFLQLFDQM---HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
           G+ +K ++ FD M       ++ D +T  ++  L  R  R      + +R +  G    +
Sbjct: 98  GQWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSL-GRLGRSDWAQLIFDRAVGAGFGNNV 156

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF 188
             + SL+ AY   G L  A  I +AM+     VCK                         
Sbjct: 157 FVYSSLICAYGRSGKLAKAVEIFEAMKV----VCK------------------------- 187

Query: 189 EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
                                 PN  +Y  ++      G     +R+   M  Q      
Sbjct: 188 ----------------------PNLVVYNAVIDACSKGGDYPTALRIFREMLEQ---GMS 222

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD +T+ T++SA  +A   +   ++ AEM   G+  + +TYN L+  YC+  Q+     L
Sbjct: 223 PDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAAL 282

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           +  MA  + IEP V++Y+ +IDG+  +  +  A+  F EMR + + P  I Y T++   A
Sbjct: 283 METMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHA 342

Query: 369 LSSQPKLANKVFDE------MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
                +L N  FDE       + +     DIV +N L++ Y + G   EA  ++E MK+ 
Sbjct: 343 -----RLGN--FDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQR 395

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G  PN+ TY +L +         +A+ L++      +VKK G          L+PD  L 
Sbjct: 396 GASPNILTYSALIDAYCKHGFHRDAMALFQ------DVKKAG----------LQPDVVLY 439

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L D C +     +AL ++  M ++GI PN   Y  +
Sbjct: 440 STLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSL 477



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 168/426 (39%), Gaps = 95/426 (22%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   YNAV++AC+  G     L++F +M E G  PD +T+N +I    RA+R      
Sbjct: 187 KPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDR 246

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +   + E GI     T+ +L+A Y   G + +   +++ M +                  
Sbjct: 247 IFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAK------------------ 288

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                 +   EP ++          Y+T++ GY   G   + + 
Sbjct: 289 ----------------------SSGIEPSVI---------TYSTMIDGYAKLGLAHEAIA 317

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   MR Q      PD + Y T+V    + G+ D A  +   M   G   + +TYN LL 
Sbjct: 318 LFQEMRNQN---VEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLD 374

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            Y +Q +  +A  LL EM       P++++Y+ LID +        A+  F +++  G+ 
Sbjct: 375 SYGKQGKFREAMSLLEEMKQRGA-SPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQ 433

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR--------- 405
           P  + Y+TL+     +  P  A  + +EM  D  ++ +++ +N L++ Y R         
Sbjct: 434 PDVVLYSTLVDGCCKNGSPDEALALLEEM-ADNGIRPNVITYNSLLDAYGRQCLMVRKNF 492

Query: 406 --------------------------------MGLVEEAKRIIERMKENGFYPNVATYGS 433
                                             LV  A R+   M +NG  PNV T+ S
Sbjct: 493 PKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSS 552

Query: 434 LANGIS 439
           + N  S
Sbjct: 553 ILNACS 558



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 155/396 (39%), Gaps = 73/396 (18%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  +P    Y+ +++  A LG   + + LF +M     +PD + YN M+ + AR      
Sbjct: 290 SGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDE 349

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              +   + E G    + T+ +L+ +Y   G    A ++++ M++               
Sbjct: 350 AHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQ--------------- 394

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                              +  +PN   Y+ L+  Y   G   D
Sbjct: 395 -----------------------------------RGASPNILTYSALIDAYCKHGFHRD 419

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + +   +++       PD V Y+T+V    K GS D A  +L EM   G+  N ITYN 
Sbjct: 420 AMALFQDVKKA---GLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNS 476

Query: 292 LLKGYCQQ-LQIDKAKELLREMADDAKIEPDVVSY---NILIDGFILIDDSA------GA 341
           LL  Y +Q L + K    LR       + P V      ++  D   L+D          A
Sbjct: 477 LLDAYGRQCLMVRKNFPKLRFF-----LLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAA 531

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLV 400
              F EM   G+ P  +++++++ A +  +  + A+ + + M + D RV       + L+
Sbjct: 532 ARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFDGRV---YGVTHGLL 588

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            G+ R+ +  +A+ +   +   G    VA Y +L +
Sbjct: 589 MGF-RIRVWRDAETLFNELTTLGHNTAVAFYNALTD 623


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 123/542 (22%), Positives = 238/542 (43%), Gaps = 89/542 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P +  +S +++ L  +G     E   LF + + R             K D   
Sbjct: 301 MIEKGIVPDLVIYSILINGLFRAGK--LEEGNSLFSMALAR-----------GVKMDVVI 347

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++++++A   +G   K ++++ +M + G  P+V+TY+++I    R  R      V  +IL
Sbjct: 348 FSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQIL 407

Query: 121 EMGITLCMTTFQSLVAAYV-------GFG------------DLEIAETIVQAM-REGRRD 160
           + G+   + T+ SL+  +        GFG            D+ +   ++  + R+G  D
Sbjct: 408 KQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMD 467

Query: 161 ------VCKIIRELDLEDYSSENEGDD-------DDDDEVF-----EKLLPNSINPS--- 199
                    + R L L +Y      D         D  +++      K++P+ +  +   
Sbjct: 468 EALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLV 527

Query: 200 ---SEP-----------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
              +E             LL K F+P+  IY TL+ G+  +    D    L   +  + N
Sbjct: 528 KGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKK---RDPATGLQIFKLMQSN 584

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD   Y  +++   + G ++   ++L E+ + G+  + +TYN ++ GYC      KA
Sbjct: 585 GIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKA 644

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +L  E+    + +P+ +++ ILID +        A+  F+ M  RG  P  ++Y+ L+ 
Sbjct: 645 IKLF-EVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLID 703

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            +  +   + A +++++ML D RV  +IV++++L++G C+ GL+EEA    +        
Sbjct: 704 GYFKTENTESAFELYEKMLGD-RVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLL 762

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           P+V  YG L  G     +  EA++L+                D  L   + PD+ L  AL
Sbjct: 763 PDVIAYGILIRGYCKVGRLAEAMMLY----------------DHMLVNGIMPDDLLQKAL 806

Query: 486 AD 487
           A+
Sbjct: 807 AE 808



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 203/475 (42%), Gaps = 40/475 (8%)

Query: 45  FSDPDIVSDSKPDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           F D  + S   P+   ++ ++N  C  L   + F  L++ M E G  PD++ Y+++I   
Sbjct: 262 FFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAF-SLYNLMIEKGIVPDLVIYSILINGL 320

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVC 162
            RA +      +    L  G+ + +  F S++ AYV  GDL  A E   + ++EG     
Sbjct: 321 FRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISP-- 378

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
            ++    L +    N G   +   VF ++L   + PS                Y++L+ G
Sbjct: 379 NVVTYSILINGLCRN-GRVLEACGVFGQILKQGLEPS-------------VLTYSSLIDG 424

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           +     + D   + G M R+      PD V  + +++ L + G MD A +   +  + G+
Sbjct: 425 FCKSENLRDGFGLYGIMLRK---GHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N   +N L+ G C +L+  +    +  +    K+ PDVV+Y +L+ G         AL
Sbjct: 482 TLNNYLFNALIDG-CFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEAL 540

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F ++  +G +P  I Y TL+  F     P    ++F ++++   +  DI  +N+L+  
Sbjct: 541 ALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIF-KLMQSNGIFPDICIYNVLINM 599

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
           + R G VE    ++  + + G  P++ TY ++  G    +   +A+ L+       EV K
Sbjct: 600 FFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLF-------EVLK 652

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            G           +P+      L D   +      A+ I + M E G  PN   Y
Sbjct: 653 CGRT---------QPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTY 698



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 178/412 (43%), Gaps = 57/412 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G++P V   S +++ L+  G     E+++ F   VKR    ++             
Sbjct: 441 MLRKGHVPDVVVCSMLINGLSRQGMMD--EALRFFFQAVKRGLTLNN-----------YL 487

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA+++ C  L + +  L+++  M  +   PDV+TY V++K  A   R    + +  ++L
Sbjct: 488 FNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLL 547

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVC--KIIRELDLEDYSSE 176
           + G +     + +L+  +    D      I + M+      D+C   ++  +   +   E
Sbjct: 548 KKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVE 607

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLP-----------KTFA--------------- 210
           N         V E LL   I    EP ++            K F+               
Sbjct: 608 N---------VLE-LLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQ 657

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  +T L+  Y  +GR+ D + +  +M  +      P+ +TY+ ++    K  + + A
Sbjct: 658 PNAITFTILIDAYCKDGRMDDAMLIFSSMLER---GPEPNILTYSCLIDGYFKTENTESA 714

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M    V  N ++Y+IL+ G C++  +++A  L  + A    + PDV++Y ILI 
Sbjct: 715 FELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEA-SLAFQCAIGRHLLPDVIAYGILIR 773

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           G+  +   A A+  ++ M   GI P  +    L +     SQ  + + VF E
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQASIYSTVFPE 825



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 151/364 (41%), Gaps = 56/364 (15%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG-AMRRQEDNASHPDHVTYTTVVSALV 262
           ++ K   P+  IY+ L+ G    G++ +   +   A+ R        D V +++++ A V
Sbjct: 301 MIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALAR----GVKMDVVIFSSIMDAYV 356

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           + G + +A +V   M + G+  N +TY+IL+ G C+  ++ +A  +  ++     +EP V
Sbjct: 357 RVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQG-LEPSV 415

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-------------- 368
           ++Y+ LIDGF   ++       +  M  +G  P  +  + L+   +              
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475

Query: 369 -----LSSQPKLANKVFDEMLRDPR---------------VKVDIVAWNMLVEGYCRMGL 408
                L+    L N + D   R  R               V  D+V + +LV+G    G 
Sbjct: 476 AVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGR 535

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           ++EA  +  ++ + GF P+   Y +L +G    R P   L ++K ++             
Sbjct: 536 LDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSN----------- 584

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
                 + PD  + + L ++  R       LE++  + ++G+ P+   Y  +     S  
Sbjct: 585 -----GIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLK 639

Query: 529 FTSK 532
             SK
Sbjct: 640 IFSK 643



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 30/311 (9%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + F P +R++  ++  + N       + +LG       N        Y+ ++    + G 
Sbjct: 103 RMFDPATRVFDRMVGQFGN-------LEVLGEFHGSFRNYGSNPSTVYSFLLHCYCRNGM 155

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +DRA    A M+++GV  +    + +L       +ID   E   EM     +      Y 
Sbjct: 156 VDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKGLGV------YE 209

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            + + F+   +    L F   +  RG+ P  +    ++K   + +Q  +A+  FD M+R 
Sbjct: 210 FVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRS 269

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
                ++V ++ L+  YC+   ++EA  +   M E G  P++  Y  L NG+  A K  E
Sbjct: 270 GP-SPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEE 328

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
              L+     R                 +K D  +  ++ D  VR     KA+E+   M 
Sbjct: 329 GNSLFSMALAR----------------GVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRML 372

Query: 507 EHGIPPNKTKY 517
           + GI PN   Y
Sbjct: 373 KEGISPNVVTY 383



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 35/275 (12%)

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH------------PDHV-------- 252
           S +Y+ L+  Y   G V   V     M +   + SH             D +        
Sbjct: 140 STVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYE 199

Query: 253 -------TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
                   Y  V ++ +K G +++       +   G+    +  N +LKG C   QI  A
Sbjct: 200 EMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVA 259

Query: 306 KELLREMADDAKIEPDVVSYNILIDGF---ILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            +    M       P++V+++ LI+ +   + +D+   A + +N M  +GI P  + Y+ 
Sbjct: 260 SDFFDMMVRSGP-SPNLVTFSTLINVYCKELRLDE---AFSLYNLMIEKGIVPDLVIYSI 315

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+     + + +  N +F  M     VK+D+V ++ +++ Y R+G + +A  +  RM + 
Sbjct: 316 LINGLFRAGKLEEGNSLF-SMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE 374

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G  PNV TY  L NG+    +  EA  ++ +I ++
Sbjct: 375 GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQ 409


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 225/534 (42%), Gaps = 84/534 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVV--------------------- 39
           M + G+ P   A++T++  LA +G     E++K+ D ++                     
Sbjct: 251 MEKCGFPPDAIAYNTMIDGLAKAGH--AQEALKVLDNMLAKACVPTEVTYGILVNSLCKA 308

Query: 40  ---KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
              +R  +       S  +P++  Y ++++  A  G+ K+   LFD+M E G +PDV+T+
Sbjct: 309 GTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITH 368

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-- 154
            VMI    ++          E ++  G    + T+ +++      G +  A  I++ M  
Sbjct: 369 TVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIA 428

Query: 155 ------------------REGRRD-VCKIIRELD-------LEDYSSENEGDDDDD---- 184
                             + GR D   +++ ELD       L+ YSS  +G  D      
Sbjct: 429 HGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVEN 488

Query: 185 --DEVFE--KLLPNSINPSSEPPL---LPKT-----------------FAPNSRIYTTLM 220
             D++FE  K    +++P     +   L KT                   P++  Y  L+
Sbjct: 489 TLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILI 548

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G +   R +   R    +   E     PD VTYT +   L K G +DRA ++L E +  
Sbjct: 549 NG-LCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSR 607

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G  A+ + Y  L  G C Q Q+D+A  L +EM       PD  +Y  +I+G I       
Sbjct: 608 GWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGG-APDAAAYCCIINGLIKGKKLED 666

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A  FF+EM  +G  PT  +YT L++A   +     A   F+ ML    +   ++ ++ L+
Sbjct: 667 ACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALI 726

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            G+C+   V+ A ++ E M   G  P   T  SL +G+  + K  +A  L +E+
Sbjct: 727 HGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEM 780



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 161/390 (41%), Gaps = 58/390 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD A + A++       + K+  ++F QM + G  PD + YN MI   A+A      + V
Sbjct: 223 PDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKV 282

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +L         T+  LV +    G LE AE + + M                     
Sbjct: 283 LDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMA-------------------- 322

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            F PNS IYT+L+ G+   GR+ +   +
Sbjct: 323 ------------------------------ASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M    +    PD +T+T ++  L K+G+ ++A +   EM R G   N +TY  +++G
Sbjct: 353 FDEM---VEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQG 409

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +  ++  A  +++ M       PD V+Y  L+DGF  +     A    +E+     +P
Sbjct: 410 LSKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSP 468

Query: 356 TKISYTTLMKAFALSSQPKLANKVFD--EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               Y++L+K   L     + N + D  E  +     +D      ++ G C+ G ++EA 
Sbjct: 469 NLQLYSSLVK--GLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEAC 526

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARK 443
           RI +RM   G  P+  TY  L NG+  +R+
Sbjct: 527 RIFQRMVSEGCKPDATTYNILINGLCRSRE 556



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 41/285 (14%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L    APN+  +  L++ +    R  D V     M+R+      PD  T+  +V  L K
Sbjct: 145 MLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKR---CKPDLHTFLILVDCLCK 201

Query: 264 AGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           AG  ++A +V  EM  +G VP +R  +  +++   +  ++ +A+E+  +M +     PD 
Sbjct: 202 AGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQM-EKCGFPPDA 260

Query: 323 VSYNILIDGF-----------------------------ILIDD--SAGAL----TFFNE 347
           ++YN +IDG                              IL++    AG L      F  
Sbjct: 261 IAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRV 320

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M A G  P  + YT+L+  FA S + K A  +FDEM+ +   + D++   ++++G C+ G
Sbjct: 321 MAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV-EAGYRPDVITHTVMIDGLCKSG 379

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
             E+A +  E M   G  PNV TY ++  G+S   +   A  + K
Sbjct: 380 NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMK 424



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 120/314 (38%), Gaps = 54/314 (17%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E      D  TY  +++ LV   +  +   +  EM + G+  N  ++NIL++ + +  + 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-------- 354
           D A     E+    + +PD+ ++ IL+D          A   F+EM A G          
Sbjct: 171 DDAVTCF-EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHT 229

Query: 355 ----------------------------PTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
                                       P  I+Y T++   A +   + A KV D ML  
Sbjct: 230 AMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAK 289

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V  + V + +LV   C+ G +E A+ +   M  +GF PN   Y SL +G +   K G 
Sbjct: 290 ACVPTE-VTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFA---KSG- 344

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
                  +KE C +  E V A        +PD      + D   ++  F +A +    M 
Sbjct: 345 ------RMKEACSLFDEMVEAG------YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMM 392

Query: 507 EHGIPPNKTKYKKI 520
             G  PN   Y  I
Sbjct: 393 RGGCKPNVVTYTTI 406


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 123/545 (22%), Positives = 229/545 (42%), Gaps = 88/545 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P    ++T++     SG             +++   +     +     PD   
Sbjct: 306 MMNQGCIPDDFTYNTIIDGYCKSG-------------MLQEATELLKDAVFKGFVPDRVT 352

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y +++N     G  ++ L+LF++      KPD++ YN ++K LC +    H L  V+  +
Sbjct: 353 YCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQ-VMNEM 411

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +E G    + T+  ++      G++  A  ++                            
Sbjct: 412 VEEGCHPDIWTYNIIINGLCKMGNISDAAVVM---------------------------- 443

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
               +D + +  LP+                     + TL+ GY    ++   ++++   
Sbjct: 444 ----NDAIVKGYLPDVFT------------------FNTLIDGYCKRLKLDSALQLV--- 478

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R       PD +TY +V++ L KAG      +   EM   G   N ITYNIL++ +C+ 
Sbjct: 479 ERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKI 538

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+++A  ++  M  D  + PD VS+N LI GF    D  GA   F ++  +G + T  +
Sbjct: 539 NQLEEASGVIVRMCQDGLV-PDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADT 597

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           +  L+ A++     ++A K+F EM+     K D+  + +LV+G C+   V+ A   +  M
Sbjct: 598 FNILIGAYSSKLNMQMAEKIFGEMI-SKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEM 656

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA-----DSDLPPP 474
              GF P++AT+G + N +++  +  EA+ +   I  R  V  E V+        ++  P
Sbjct: 657 ISKGFVPSMATFGRMLNLLAMNHRVSEAVAII-HIMVRMGVVPEVVDTILSTDKKEIAAP 715

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
               EEL+        +     +A E++      G+  NK   K    +  S MF S+H 
Sbjct: 716 KILVEELMK-------KGHISYRAYEVL----HEGVRDNKLTRKARKADA-SIMFVSQHH 763

Query: 535 SQARQ 539
            ++ Q
Sbjct: 764 KRSYQ 768



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 210/484 (43%), Gaps = 51/484 (10%)

Query: 9   HVKAWSTVVSRLAAS-GDDGPVESVKLFD--------VVVKRVRKFSDPDIVSDSKPDTA 59
           H +A    V  LAA    D    +V+L          V ++ +R  S+     D+KP  A
Sbjct: 122 HDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERG--CDAKP--A 177

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARA---SRKHLLVFV 115
           AY  V+      G       LFD+M      PDV T+N V+  LC +        LL  V
Sbjct: 178 AYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKV 237

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----------REGRRDVCKI 164
           L+R +      C    + L       G LE A  +V+ M               R +CK 
Sbjct: 238 LKRGMSANKFTCNIWIRGLCED----GRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKD 293

Query: 165 IRELDLEDYSSE--NEG---DDDDDDEVFEKLLPNSINPSSEPPL---LPKTFAPNSRIY 216
            +  +   Y     N+G   DD   + + +    + +   +   L   + K F P+   Y
Sbjct: 294 SKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTY 353

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            +L+ G   EG   D  R L      +     PD V Y ++V  L + G +  A QV+ E
Sbjct: 354 CSLINGLCAEG---DIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNE 410

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE---PDVVSYNILIDGFI 333
           M   G   +  TYNI++ G C+   I  A  ++    +DA ++   PDV ++N LIDG+ 
Sbjct: 411 MVEEGCHPDIWTYNIIINGLCKMGNISDAAVVM----NDAIVKGYLPDVFTFNTLIDGYC 466

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  AL     M   GIAP  I+Y +++     + + K  N+ F+EM+     + + 
Sbjct: 467 KRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKG-CRPNA 525

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           + +N+L+E +C++  +EEA  +I RM ++G  P+  ++ +L +G         A LL+++
Sbjct: 526 ITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQK 585

Query: 454 IKER 457
           + E+
Sbjct: 586 LDEK 589



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 198/447 (44%), Gaps = 50/447 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR---VRKFSDPDIVSDSKPD 57
           ML     P V  ++ V+  L   GD   +ES  L   V+KR     KF+           
Sbjct: 202 MLGRDVFPDVATFNNVLHALCQKGD--VMESGALLAKVLKRGMSANKFT----------- 248

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
               N  +      G+ ++ + L ++M  + A PDV+TYN +++   + S+       L 
Sbjct: 249 ---CNIWIRGLCEDGRLEEAVALVERMGAYVA-PDVVTYNTLMRGLCKDSKVQEAAQYLG 304

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG----RRDVCKIIRELDLED 172
           R++  G      T+ +++  Y   G L E  E +  A+ +G    R   C +I  L    
Sbjct: 305 RMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLC--- 361

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                EGD +   E+F +                K   P+  +Y +L+KG   +G +   
Sbjct: 362 ----AEGDIERALELFNEAQA-------------KDLKPDLVVYNSLVKGLCRQGLI--- 401

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +  L  M    +   HPD  TY  +++ L K G++  A  V+ +    G   +  T+N L
Sbjct: 402 LHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTL 461

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + GYC++L++D A +L+  M     I PDV++YN +++G      +      F EM  +G
Sbjct: 462 IDGYCKRLKLDSALQLVERMWTYG-IAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKG 520

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  I+Y  L++ F   +Q + A+ V   M +D  V  D V++N L+ G+CR G ++ A
Sbjct: 521 CRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVP-DAVSFNTLIHGFCRNGDLDGA 579

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
             + +++ E G+     T+  L    S
Sbjct: 580 YLLFQKLDEKGYSATADTFNILIGAYS 606



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 181/420 (43%), Gaps = 28/420 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   AYNA+++A  N     +  +++ +M   G  PD  T+ V +K      R H+ + +
Sbjct: 104 PAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRL 163

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G       + ++V      G    A  +   M    RDV   +   +   ++ 
Sbjct: 164 LRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLG--RDVFPDVATFNNVLHAL 221

Query: 176 ENEGDDDDDDEVFEKLLPNSINPS-----------SEPPLLPKT----------FAPNSR 214
             +GD  +   +  K+L   ++ +            E   L +            AP+  
Sbjct: 222 CQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVV 281

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y TLM+G   + +V +  + LG M  Q      PD  TY T++    K+G +  A ++L
Sbjct: 282 TYNTLMRGLCKDSKVQEAAQYLGRMMNQ---GCIPDDFTYNTIIDGYCKSGMLQEATELL 338

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +    G   +R+TY  L+ G C +  I++A EL  E A    ++PD+V YN L+ G   
Sbjct: 339 KDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNE-AQAKDLKPDLVVYNSLVKGLCR 397

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 AL   NEM   G  P   +Y  ++           A  V ++ +    +  D+ 
Sbjct: 398 QGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLP-DVF 456

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +N L++GYC+   ++ A +++ERM   G  P+V TY S+ NG+  A K  E    ++E+
Sbjct: 457 TFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEM 516



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 195/465 (41%), Gaps = 47/465 (10%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A + A A  G+ +  +  F++M  F   P    YN ++     A+       V  R+L
Sbjct: 74  YVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRML 133

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV-----CKIIRELDLEDYSS 175
             G+     T    + ++   G   +A  +++++ E   D      C ++R L    Y+ 
Sbjct: 134 AAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGL----YA- 188

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   +   +F+++L   +              P+   +  ++     +G V ++  +
Sbjct: 189 --HGHGYNARHLFDEMLGRDV-------------FPDVATFNNVLHALCQKGDVMESGAL 233

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  + ++  +A   +  T    +  L + G ++ A  ++  M     P + +TYN L++G
Sbjct: 234 LAKVLKRGMSA---NKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAP-DVVTYNTLMRG 289

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  ++ +A + L  M +   I PD  +YN +IDG+        A     +   +G  P
Sbjct: 290 LCKDSKVQEAAQYLGRMMNQGCI-PDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVP 348

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            +++Y +L+         + A ++F+E  +   +K D+V +N LV+G CR GL+  A ++
Sbjct: 349 DRVTYCSLINGLCAEGDIERALELFNEA-QAKDLKPDLVVYNSLVKGLCRQGLILHALQV 407

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M E G +P++ TY  + NG+    K G              +    V  +  +    
Sbjct: 408 MNEMVEEGCHPDIWTYNIIINGLC---KMGN-------------ISDAAVVMNDAIVKGY 451

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            PD    + L D   +      AL++V  M  +GI P+   Y  +
Sbjct: 452 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSV 496



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 148/390 (37%), Gaps = 91/390 (23%)

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
           S+   L P +  P   +Y   ++ Y   GR+   V    A  R +  A  P    Y  ++
Sbjct: 60  SARSHLAPDSLQP---LYVASIQAYARAGRLRAAV---DAFERMDLFACPPAAPAYNAIM 113

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD---D 315
            ALV A   D+A +V   M   GV  +  T+ + LK +C   +   A  LLR +++   D
Sbjct: 114 DALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCD 173

Query: 316 AK-------------------------------IEPDVVSYNILIDGFILIDD--SAGAL 342
           AK                               + PDV ++N ++       D   +GAL
Sbjct: 174 AKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGAL 233

Query: 343 ------------TFFNEMRARGI--------------------APTKISYTTLMKAFALS 370
                        F   +  RG+                    AP  ++Y TLM+     
Sbjct: 234 LAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKD 293

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           S+ + A +    M+    +  D   +N +++GYC+ G+++EA  +++     GF P+  T
Sbjct: 294 SKVQEAAQYLGRMMNQGCIPDDFT-YNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVT 352

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           Y SL NG+        AL L+ E + +                 LKPD  + ++L     
Sbjct: 353 YCSLINGLCAEGDIERALELFNEAQAK----------------DLKPDLVVYNSLVKGLC 396

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           R      AL+++  M E G  P+   Y  I
Sbjct: 397 RQGLILHALQVMNEMVEEGCHPDIWTYNII 426


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 140/283 (49%), Gaps = 38/283 (13%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F PN   Y T++ GY + G +    R+L AMR +      PD  TY +++S + K G ++
Sbjct: 204 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK---GIEPDSYTYGSLISGMCKEGRLE 260

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM---------------- 312
            A  +  +M  IG+  N +TYN L+ GYC +  +++A     EM                
Sbjct: 261 EASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLV 320

Query: 313 -----------ADD-------AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
                      ADD         I PD ++YNILI+G+    ++  A    NEM ++GI 
Sbjct: 321 HALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIE 380

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT ++YT+L+   +  ++ K A+ +F+++L D  V  D++ +N +++G+C  G VE A  
Sbjct: 381 PTHVTYTSLIYVLSRRNRMKEADDLFEKIL-DQGVSPDVIMFNAMIDGHCANGNVERAFM 439

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +++ M      P+  T+ +L  G     K  EA +L  E+K R
Sbjct: 440 LLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXR 482



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 191/422 (45%), Gaps = 23/422 (5%)

Query: 20  LAASGDDGPVESVKLFDVV---VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKK 76
           L  S D   V+S  +FD++   +K+ R+F         KP+  +YN +++  ++ G  + 
Sbjct: 167 LTLSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEG 226

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
             ++ D M   G +PD  TY  +I    +  R      + ++++E+G+     T+ +L+ 
Sbjct: 227 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 286

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
            Y   GDLE A +    M   ++ +   +   +L  ++   EG   + D++ +++    I
Sbjct: 287 GYCNKGDLERAFSYRDEMV--KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI 344

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                         P++  Y  L+ GY    R  +  R              P HVTYT+
Sbjct: 345 -------------IPDAITYNILINGY---SRCGNAKRAFDLHNEMLSKGIEPTHVTYTS 388

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  L +   M  A  +  ++   GV  + I +N ++ G+C    +++A  LL+EM D  
Sbjct: 389 LIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEM-DRK 447

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            + PD V++N L+ G         A    +EM+ RGI P  ISY TL+  +      K A
Sbjct: 448 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDA 507

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             V DEML        ++ +N L++  C+    + A+ +++ M   G  P+ +TY SL  
Sbjct: 508 FXVRDEML-SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIE 566

Query: 437 GI 438
           G+
Sbjct: 567 GM 568



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 149/343 (43%), Gaps = 71/343 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G +P V  ++ +V  L   G  G        D ++K +RK     I+    PD   
Sbjct: 304 MVKKGIMPSVSTYNLLVHALFMEGRMGEA------DDMIKEMRK---KGII----PDAIT 350

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N  +  G  K+   L ++M   G +P  +TY  +I + +R +R      + E+IL
Sbjct: 351 YNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 410

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G++  +  F +++  +   G++E A  +++ M                          
Sbjct: 411 DQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDR------------------------ 446

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K+  P+   + TLM+G   EG+V +   +L  M+
Sbjct: 447 --------------------------KSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMK 480

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PDH++Y T++S   + G +  A  V  EM  IG     +TYN L+K  C+  
Sbjct: 481 XR---GIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQ 537

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGF----ILIDDSA 339
           + D A+ELL+EM +   I PD  +Y  LI+G      L++D+A
Sbjct: 538 EGDLAEELLKEMVNKG-ISPDDSTYLSLIEGMGNVDTLVEDNA 579


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 209/473 (44%), Gaps = 42/473 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  ++T ++     G     E+++LF        K  +  +V    P+   YN V
Sbjct: 247 GVSPDVYLFTTAINAFCKGGK--VEEAIELFS-------KMEEAGVV----PNVVTYNTV 293

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G+  +     ++M E G +P ++TY++++K   +A R      VL+ + E G 
Sbjct: 294 IDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGF 353

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              +  + +L+ + +  G L  A  I   M      +        ++ Y     G  D  
Sbjct: 354 PPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC--KSGQADIA 411

Query: 185 DEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTTLMKG 222
           + + +++L    N +                          +L +  +P   + TTL+ G
Sbjct: 412 ERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISG 471

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
               G+ S  V +     +  +     D  T   ++  L +AG ++   ++  E+   G 
Sbjct: 472 LCKHGKHSKAVEL---WLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGF 528

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             +R++YN L+ G C   ++D+A   + EM     ++PD  +Y+ILI G + ++    A+
Sbjct: 529 VMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKG-LKPDNYTYSILIRGLLNMNKVEEAI 587

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            F+ + +  G+ P   +Y+ ++     + + +   K+FDEM+ +  ++ + V +N L+  
Sbjct: 588 QFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSN-NLQPNTVVYNHLIGA 646

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           YCR G +  A  + E MK  G  PN ATY SL  G+S+  +  EA LL +E++
Sbjct: 647 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMR 699



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 101/499 (20%), Positives = 218/499 (43%), Gaps = 47/499 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVK---RVRK 44
           M  +G +P+V  ++TV+  L  SG             + G   ++  + ++VK   + ++
Sbjct: 278 MEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKR 337

Query: 45  FSDPDIVSDSK------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             D   V          P+   YN ++++    G   K +++ D M   G      TYN 
Sbjct: 338 IGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 397

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE-----IAETIVQA 153
           +IK   ++ +  +   +L+ +L +G  +   +F S++         +     + E +++ 
Sbjct: 398 LIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRN 457

Query: 154 MREGRRDVCKIIRELDLEDYSSE---------NEG---DDDDDDEVFEKLLPNSINPSS- 200
           M  G   +  +I  L      S+         N+G   D    + +   L          
Sbjct: 458 MSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGF 517

Query: 201 --EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
             +  +L + F  +   Y TL+ G     ++ +    +  M ++      PD+ TY+ ++
Sbjct: 518 RIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKK---GLKPDNYTYSILI 574

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
             L+    ++ A Q   +  R G+  +  TY++++ G C+  + ++ ++L  EM  +  +
Sbjct: 575 RGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSN-NL 633

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +P+ V YN LI  +      + AL    +M+ +GI+P   +YT+L+K  ++ S+ + A  
Sbjct: 634 QPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 693

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           + +EM R   ++ ++  +  L++GY ++G + + + ++  M     +PN  TY  +  G 
Sbjct: 694 LLEEM-RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 752

Query: 439 SLARKPGEALLLWKEIKER 457
           +      EA  L  E++E+
Sbjct: 753 ARDGNVTEASRLLHEMREK 771



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 5/234 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K   P++  Y+ L++G +N  +V + ++  G  +R   N   PD  TY+ ++    K
Sbjct: 558 MVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKR---NGMIPDVYTYSVMIDGCCK 614

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A   +  +++  EM    +  N + YN L+  YC+  ++  A EL RE      I P+  
Sbjct: 615 AERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALEL-REDMKHKGISPNSA 673

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI G  +I     A     EMR  G+ P    YT L+  +    Q      +  EM
Sbjct: 674 TYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 733

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
                V  + + + +++ GY R G V EA R++  M+E G  P+  TY     G
Sbjct: 734 -HSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYG 786



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 164/385 (42%), Gaps = 31/385 (8%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L +F  +   G  P   T N+++    RA+           + + G++  +  F + + A
Sbjct: 203 LDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVCK-GVSPDVYLFTTAINA 261

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF---EKLLPN 194
           +   G +E A  +   M E       ++  +   +   +  G     DE F   EK++  
Sbjct: 262 FCKGGKVEEAIELFSKMEEA-----GVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVER 316

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
            +    EP L+          Y+ L+KG     R+ D   +L  M    +    P+ + Y
Sbjct: 317 GV----EPTLIT---------YSILVKGLTKAKRIGDAYCVLKEM---TEKGFPPNVIVY 360

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
             ++ +L++AGS+++A ++   M   G+     TYN L+KGYC+  Q D A+ LL+EM  
Sbjct: 361 NNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLS 420

Query: 315 DA--KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                 +    S   L+    + D    AL F  EM  R ++P     TTL+       +
Sbjct: 421 IGFNVNQGSFTSVICLLCSHHMFDS---ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGK 477

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A +++ + L    + VD    N L+ G C  G +EE  RI + +   GF  +  +Y 
Sbjct: 478 HSKAVELWLKFLNKGFL-VDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYN 536

Query: 433 SLANGISLARKPGEALLLWKEIKER 457
           +L +G    +K  EA +   E+ ++
Sbjct: 537 TLISGCCGNKKLDEAFMFMDEMVKK 561



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 153/349 (43%), Gaps = 33/349 (9%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           DT   NA+L+     GK ++  ++  ++   G   D ++YN +I  C    +       +
Sbjct: 496 DTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFM 555

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + +++ G+     T+  L+    G  ++   E  +Q   + +R+   +I   D+  YS  
Sbjct: 556 DEMVKKGLKPDNYTYSILIR---GLLNMNKVEEAIQFWGDCKRN--GMIP--DVYTYSVM 608

Query: 177 NEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            +G       ++  ++F++++ N++ P             N+ +Y  L+  Y   GR+S 
Sbjct: 609 IDGCCKAERTEEGQKLFDEMMSNNLQP-------------NTVVYNHLIGAYCRSGRLSM 655

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + +   M+ +      P+  TYT+++  +     ++ A+ +L EM   G+  N   Y  
Sbjct: 656 ALELREDMKHK---GISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTA 712

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GY +  Q+ K + LLREM     + P+ ++Y ++I G+    +   A    +EMR +
Sbjct: 713 LIDGYGKLGQMVKVECLLREM-HSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREK 771

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           GI P  I+Y   +  +        A K  DE          I  WN L+
Sbjct: 772 GIVPDSITYKEFIYGYLKQGGVLQAFKGSDE----ENYAAIIEGWNKLI 816



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 53/244 (21%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+ +++ C    + ++  +LFD+M     +P+ + YN +I    R+ R  + + +
Sbjct: 600 PDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALEL 659

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +   GI+    T+ SL+        +E A+ +++ MR                    
Sbjct: 660 REDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMR-------------------- 699

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                        E L PN  +                  YT L+ GY   G++   V++
Sbjct: 700 ------------MEGLEPNVFH------------------YTALIDGY---GKLGQMVKV 726

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              +R       HP+ +TYT ++    + G++  A ++L EM   G+  + ITY   + G
Sbjct: 727 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYG 786

Query: 296 YCQQ 299
           Y +Q
Sbjct: 787 YLKQ 790



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 99/268 (36%), Gaps = 66/268 (24%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R+G +P V  +S ++     +  +   E  KLFD ++            ++ +P+T  YN
Sbjct: 595 RNGMIPDVYTYSVMIDGCCKA--ERTEEGQKLFDEMMS-----------NNLQPNTVVYN 641

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            ++ A    G+    L+L + M   G  P+  TY  +IK  +  SR      +LE +   
Sbjct: 642 HLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRME 701

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+   +  + +L+  Y   G +   E +++ M                            
Sbjct: 702 GLEPNVFHYTALIDGYGKLGQMVKVECLLREMH--------------------------- 734

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                                   K   PN   YT ++ GY  +G V++  R+L  MR  
Sbjct: 735 -----------------------SKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMR-- 769

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRA 270
            +    PD +TY   +   +K G + +A
Sbjct: 770 -EKGIVPDSITYKEFIYGYLKQGGVLQA 796


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 196/425 (46%), Gaps = 27/425 (6%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF---GAKP 91
            D+V++R+ + S         PD  +   +L    +  + ++ L+L   M +    G+ P
Sbjct: 142 MDIVLRRMTELS-------CMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAP 194

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           DV++Y  +I    +             +L+  I+  + T+ S++AA      ++ A  ++
Sbjct: 195 DVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 152 QAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
            +M + G    C+    + +  Y S   G   +     +K+  + + P            
Sbjct: 255 TSMVKNGVMPNCRTYTSI-MHGYCSS--GQPKEAIGFLKKVRSDGVEPDG--------LE 303

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y TL++GY  +G +     +L  M R   N  HPDH  Y  ++ A  K G +D A
Sbjct: 304 PDIATYCTLLQGYATKGALVGMHALLDLMVR---NGIHPDHYVYNILICAYAKQGKVDEA 360

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             V ++M + G+  + +TY  ++   C+  +++ A     +M D+  + P  + YN LI 
Sbjct: 361 MLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG-LSPGNIVYNSLIH 419

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G    +    A     EM  RGI    I + +++ +     +   + K+FD M+R   VK
Sbjct: 420 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVK 478

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DI+ ++ L++GYC  G ++EA +++  M   G  PN  TY +L NG     + G+AL+L
Sbjct: 479 PDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVL 538

Query: 451 WKEIK 455
           +KE++
Sbjct: 539 FKEME 543



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 200/440 (45%), Gaps = 32/440 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFS-DPDIVSDSKPDTA 59
           M+++G +P+ + +++++    +SG   P E++      +K+VR    +PD +   +PD A
Sbjct: 257 MVKNGVMPNCRTYTSIMHGYCSSGQ--PKEAIGF----LKKVRSDGVEPDGL---EPDIA 307

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y  +L   A  G       L D M   G  PD   YN++I   A+  +    + V  ++
Sbjct: 308 TYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKM 367

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+     T+ +++      G +E A    + M +       I+    +    + N+ 
Sbjct: 368 RQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 427

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                 E  E+L+           +L +    N+  + +++  +  EGRV ++ ++   M
Sbjct: 428 ------ERAEELILE---------MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLM 472

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R       PD +TY+T++     AG MD A ++L+ M  +G+  N +TY  L+ GYC+ 
Sbjct: 473 VRI---GVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKI 529

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++  A  L +EM + + + PD+++YNI++ G      +A A   +  +   G      +
Sbjct: 530 SRMGDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 588

Query: 360 YTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           Y  ++     +     A ++F  + L D  +K++   +N++++   ++G   EAK +   
Sbjct: 589 YNIILHGLCKNKLTDDALRMFQNLCLMD--LKLEARTFNIMIDALLKVGRNGEAKDLFVA 646

Query: 419 MKENGFYPNVATYGSLANGI 438
              NG  PN  TY  +A  I
Sbjct: 647 FSSNGLVPNYWTYRLMAENI 666



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 197/485 (40%), Gaps = 65/485 (13%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P V TY ++I  C RA R  L    L  +++ G  +   T
Sbjct: 65  PAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAIT 124

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFE- 189
           F  L+                       + +C   R  D  D       +     +VF  
Sbjct: 125 FTPLL-----------------------KGLCADKRTSDAMDIVLRRMTELSCMPDVFSC 161

Query: 190 KLLPNSI---NPSSEPPLLPKTFA--------PNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            +L   +   N S E   LP   A        P+   YTT++ G+  EG   D+ +    
Sbjct: 162 TILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEG---DSGKAYST 218

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
                D    PD VTY+++++AL K  +MD+A +VL  M + GV  N  TY  ++ GYC 
Sbjct: 219 YHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCS 278

Query: 299 QLQIDKAKELLREMADDA----KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             Q  +A   L+++  D      +EPD+ +Y  L+ G+       G     + M   GI 
Sbjct: 279 SGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIH 338

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P    Y  L+ A+A   +   A  VF +M R   +  D V +  ++   C+ G VE+A  
Sbjct: 339 PDHYVYNILICAYAKQGKVDEAMLVFSKM-RQQGLNPDAVTYGAVIGILCKSGRVEDAML 397

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--C-----------EVK 461
             E+M + G  P    Y SL +G+    K   A  L  E+ +R  C              
Sbjct: 398 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 457

Query: 462 KEGVNADSD------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           KEG   +S+      +   +KPD      L D    A    +A+++++ M   G+ PN  
Sbjct: 458 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTV 517

Query: 516 KYKKI 520
            Y+ +
Sbjct: 518 TYRTL 522



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/499 (21%), Positives = 208/499 (41%), Gaps = 64/499 (12%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD  +Y  V+N     G   K    + +M +    PDV+TY+ +I    +       +
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +++ G+     T+ S++  Y   G  + A   ++ +R    +   +  E D+  Y
Sbjct: 252 EVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGL--EPDIATY 309

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            +  +G       V    L +         ++     P+  +Y  L+  Y  +G+V + +
Sbjct: 310 CTLLQGYATKGALVGMHALLD--------LMVRNGIHPDHYVYNILICAYAKQGKVDEAM 361

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   MR+Q  N   PD VTY  V+  L K+G ++ A     +M   G+    I YN L+
Sbjct: 362 LVFSKMRQQGLN---PDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 418

Query: 294 KGYCQQLQIDKAKELLREMADDA----------------------------------KIE 319
            G C   + ++A+EL+ EM D                                     ++
Sbjct: 419 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 478

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD+++Y+ LIDG+ L      A+   + M + G+ P  ++Y TL+  +   S+   A  +
Sbjct: 479 PDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVL 538

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F EM     V  DI+ +N++++G  +      AK +  R+ E+G    ++TY  + +G+ 
Sbjct: 539 FKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 597

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
             +   +AL +++ +   C +              LK +    + + D  ++     +A 
Sbjct: 598 KNKLTDDALRMFQNL---CLMD-------------LKLEARTFNIMIDALLKVGRNGEAK 641

Query: 500 EIVACMEEHGIPPNKTKYK 518
           ++      +G+ PN   Y+
Sbjct: 642 DLFVAFSSNGLVPNYWTYR 660


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/484 (23%), Positives = 214/484 (44%), Gaps = 74/484 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA-----RASRK 109
           P    +  +++ C   G   +  ++FD+M   G  P V+ Y ++I+ LC+      A   
Sbjct: 180 PSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESM 239

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
           H        + E+G+   + T+ +L+  Y    + + A  + Q M  G   V  ++    
Sbjct: 240 H------RAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDML-GEGLVPDVVTFGI 292

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           L D   +  G+      +F  ++  S+ P             N  +Y +L+  Y   G V
Sbjct: 293 LIDGLCKF-GEMKAARNLFVNMIKFSVTP-------------NIAVYNSLIDAYCKVGDV 338

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           S+ + +   + R E +   PD  TY+ ++  L      + A  +  +MT+ G+ AN +TY
Sbjct: 339 SEAMALFLELERFEVS---PDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTY 395

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L+ G C++ ++DKA E+  +M ++  +EP+V++++ LIDG+  I +   A+  ++EM 
Sbjct: 396 NSLIDGCCKEGKMDKALEICSQMTENG-VEPNVITFSTLIDGYCKIRNLQAAMGIYSEMV 454

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            + ++P                                    D+V +  +++G+C+ G +
Sbjct: 455 IKSLSP------------------------------------DVVTYTAMIDGHCKYGSM 478

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +EA ++   M +NG  PN  T   L +G+    K  +AL L+    E+ E +    N D+
Sbjct: 479 KEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELF---TEKIEFQTPRCNVDA 535

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMF 529
               P   +     AL     +   F KA+++ + M  +G+ P++     IYV M   +F
Sbjct: 536 GGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEV----IYVVMLRGLF 591

Query: 530 TSKH 533
             K+
Sbjct: 592 QVKY 595



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 167/438 (38%), Gaps = 89/438 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G +P V  +  ++  L   G+             +K  R      I     P+ A 
Sbjct: 278 MLGEGLVPDVVTFGILIDGLCKFGE-------------MKAARNLFVNMIKFSVTPNIAV 324

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++A   +G   + + LF ++  F   PDV TY+++I+     SR      + E++ 
Sbjct: 325 YNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMT 384

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI     T+ SL+                          CK              EG 
Sbjct: 385 KEGILANSVTYNSLIDG-----------------------CCK--------------EGK 407

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D   E+  ++  N +              PN   ++TL+ GY    ++ +    +G   
Sbjct: 408 MDKALEICSQMTENGVE-------------PNVITFSTLIDGYC---KIRNLQAAMGIYS 451

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                +  PD VTYT ++    K GSM  A ++ ++M   G+  N  T + LL G C+  
Sbjct: 452 EMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDG 511

Query: 301 QIDKAKELLREM---------ADDAKIEPDV---VSYNILIDGFILIDDSAGALTFFNEM 348
           +I  A EL  E           D    +P +   V+Y  LI G       + A+  F++M
Sbjct: 512 KISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDM 571

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV----AWNMLVEGYC 404
           R  G+ P ++ Y  +++            K    ML    +K  ++       +L E Y 
Sbjct: 572 RRYGLQPDEVIYVVMLRGL-------FQVKYILMMLHADMLKFGVIPNSAVHVILCECYQ 624

Query: 405 RMGLVEEAKRIIERMKEN 422
             G ++ A+   + ++EN
Sbjct: 625 ESGFLKSAQNCSKDLEEN 642


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 172/387 (44%), Gaps = 10/387 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ V+       K +K   LF +M   G  PDV TY ++I    +A         
Sbjct: 286 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSW 345

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +  +G +  + T+ +L+ AY+    L  A  I   M +       I     ++    
Sbjct: 346 FDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLC- 404

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK---TFAPNSRIYTTLMKGYMNEGRVSDT 232
              G+     EV+ KL+  S N  S+     K   + APN   Y  L+ G     +V D 
Sbjct: 405 -KAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDA 463

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L AM     N   P+H+ Y  ++    K G +D A++V   M++ G      TY  L
Sbjct: 464 QELLDAML---SNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSL 520

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +    +  ++D A ++L +M + +   P+VV+Y  +IDG   I +   AL   + M  +G
Sbjct: 521 IDAMFKDRRLDLAMKVLSQMVESS-CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKG 579

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            +P  ++YT L+     S +  L+ ++F +M        + V + +L+   C  GL++EA
Sbjct: 580 CSPNVVTYTALIDGLGKSGKVDLSLQLFIQM-STKGCAPNYVTYRVLINHCCAAGLLDEA 638

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
             ++  MK+  +   +  Y S+  G S
Sbjct: 639 HSLLSEMKQTYWPKYLQGYCSVVQGFS 665



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 37/333 (11%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P++  Y+ ++       +V     +   M+    N   PD  TYT ++ +  K
Sbjct: 279 MMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVN---PDVYTYTILIDSFCK 335

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +++AR    EM  IG  AN +TY  LL  Y +  Q+ +A ++   M  DA   P+ +
Sbjct: 336 AGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMI-DAGCPPNTI 394

Query: 324 SYNILIDG----------------FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +Y+ L+DG                 I   D+ G+  +F       IAP  ++Y  L+   
Sbjct: 395 TYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGL 454

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + +   A ++ D ML +   + + + ++ L++G+C++G ++ A+ +  RM + G+ P 
Sbjct: 455 CKAHKVVDAQELLDAMLSNG-CEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPT 513

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY SL + +   R+   A+ +  ++ E            S   P +     ++D L  
Sbjct: 514 VHTYTSLIDAMFKDRRLDLAMKVLSQMVE------------SSCTPNVVTYTAMIDGLC- 560

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R    +KAL++++ MEE G  PN   Y  +
Sbjct: 561 ---RIGECQKALKLLSMMEEKGCSPNVVTYTAL 590



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/427 (22%), Positives = 180/427 (42%), Gaps = 57/427 (13%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           ++++ R + D         +   Y A+L+A     +  +   +F++M + G  P+ +TY+
Sbjct: 338 LIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYS 397

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV-GFGDLEIAETIVQ--AM 154
            ++    +A         +++  E+   L  T+       Y  G     IA  +V   A+
Sbjct: 398 ALVDGLCKAGE-------IQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGAL 450

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
            +G   +CK  + +D +              E+ + +L N                PN  
Sbjct: 451 IDG---LCKAHKVVDAQ--------------ELLDAMLSNGCE-------------PNHI 480

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           IY  L+ G+   G++ +   +     R       P   TYT+++ A+ K   +D A +VL
Sbjct: 481 IYDALIDGFCKVGKIDNAQEVF---LRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVL 537

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
           ++M       N +TY  ++ G C+  +  KA +LL  M ++    P+VV+Y  LIDG   
Sbjct: 538 SQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLL-SMMEEKGCSPNVVTYTALIDGLGK 596

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 +L  F +M  +G AP  ++Y  L+     +     A+ +  EM +         
Sbjct: 597 SGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ--------T 648

Query: 395 AWNMLVEGYCRM--GLVEE---AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
            W   ++GYC +  G  ++   +  ++E ++ +G  P    YG L +  S A +  EAL 
Sbjct: 649 YWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALE 708

Query: 450 LWKEIKE 456
           L KE+ E
Sbjct: 709 LHKEMME 715



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/436 (21%), Positives = 182/436 (41%), Gaps = 51/436 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQM----------------HEFGAKPDVLTYNVM 99
           P+T  Y+A+++     G+ +K  +++ ++                H     P+V+TY  +
Sbjct: 391 PNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGAL 450

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
           I    +A +      +L+ +L  G       + +L+  +   G ++ A+ +   M +   
Sbjct: 451 IDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSK--- 507

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDD-EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
             C  +  +    Y+S  +    D   ++  K+L   +  S           PN   YT 
Sbjct: 508 --CGYLPTV--HTYTSLIDAMFKDRRLDLAMKVLSQMVESSC---------TPNVVTYTA 554

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++ G    G     +++L  M   E+    P+ VTYT ++  L K+G +D + Q+  +M+
Sbjct: 555 MIDGLCRIGECQKALKLLSMM---EEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMS 611

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV-SYNILIDGFILIDD 337
             G   N +TY +L+   C    +D+A  LL EM       P  +  Y  ++ GF     
Sbjct: 612 TKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ--TYWPKYLQGYCSVVQGF--SKK 667

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              +L    E+ + G  P    Y  L+  F+ + + + A ++  EM+ +    ++I + +
Sbjct: 668 FIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMM-ELSSSLNITSKD 726

Query: 398 M---LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           M   L++  C    +E+A  +   +   G  P ++ +  L  G+    K  EAL L   I
Sbjct: 727 MYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSI 786

Query: 455 KERCEVKKEGVNADSD 470
            +      EGVN  S+
Sbjct: 787 CD------EGVNWQSN 796



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 164/406 (40%), Gaps = 75/406 (18%)

Query: 26  DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85
           DG  ++ K+ D      ++  D  + +  +P+   Y+A+++    +GK     ++F +M 
Sbjct: 452 DGLCKAHKVVDA-----QELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMS 506

Query: 86  EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           + G  P V TY  +I    +  R  L + VL +++E   T  + T+ +++      G+ +
Sbjct: 507 KCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQ 566

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            A  ++  M E                                                 
Sbjct: 567 KALKLLSMMEE------------------------------------------------- 577

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            K  +PN   YT L+ G    G+V  ++++   M  +      P++VTY  +++    AG
Sbjct: 578 -KGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTK---GCAPNYVTYRVLINHCCAAG 633

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK-----ELLREMADDAKIEP 320
            +D A  +L+EM +   P         L+GYC  +Q    K      LL E+     + P
Sbjct: 634 LLDEAHSLLSEMKQTYWPK-------YLQGYCSVVQGFSKKFIASLGLLEELESHGTV-P 685

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIA---PTKISYTTLMKAFALSSQPKLAN 377
               Y +LID F        AL    EM     +    +K  YT+L++A  L+SQ + A 
Sbjct: 686 IAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAF 745

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +++ E+ R   V  ++  +  L++G  ++    EA ++   + + G
Sbjct: 746 ELYSEITRKGVVP-ELSVFVCLIKGLIKVNKWNEALQLCYSICDEG 790



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 131/334 (39%), Gaps = 62/334 (18%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  ++ + T ++ G M      + +  L  MR    N+  P+ VTY T+++  +K   + 
Sbjct: 103 FKLDTVLCTQMISGLMEASLFDEAISFLHRMRC---NSCIPNVVTYRTLLTGFLKKKQLG 159

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
             ++++  M + G   N   +N L+  YC       A +LL+ MA D    P  V+YNI 
Sbjct: 160 WCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMA-DCGCPPGYVAYNIF 218

Query: 329 IDGFI--------------------LIDDSA---------------------GALTFFNE 347
           I                        ++  S                       A      
Sbjct: 219 IGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKV 278

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +G  P   +Y+ ++     + + + A  +F EM +   V  D+  + +L++ +C+ G
Sbjct: 279 MMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEM-KSVGVNPDVYTYTILIDSFCKAG 337

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
           L+E+A+   + M+  G   NV TY +L +    A++  +A  ++  +             
Sbjct: 338 LIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRM------------I 385

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
           D+  PP       L+D L     +A   +KA E+
Sbjct: 386 DAGCPPNTITYSALVDGLC----KAGEIQKACEV 415



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 138/316 (43%), Gaps = 30/316 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + GYLP V  +++++        D   +  +L D+ +K + +  +    S   P+   
Sbjct: 505 MSKCGYLPTVHTYTSLI--------DAMFKDRRL-DLAMKVLSQMVE----SSCTPNVVT 551

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++    +G+ +K L+L   M E G  P+V+TY  +I    ++ +  L + +  ++ 
Sbjct: 552 YTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMS 611

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G      T++ L+      G L+ A +++  M++             L+ Y S  +G 
Sbjct: 612 TKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ-------TYWPKYLQGYCSVVQG- 663

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                  F K    S+    E  L      P + +Y  L+  +   GR+ + + +   M 
Sbjct: 664 -------FSKKFIASLGLLEE--LESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMM 714

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               + +      YT+++ AL  A  +++A ++ +E+TR GV      +  L+KG  +  
Sbjct: 715 ELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVN 774

Query: 301 QIDKAKELLREMADDA 316
           + ++A +L   + D+ 
Sbjct: 775 KWNEALQLCYSICDEG 790



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 126/320 (39%), Gaps = 57/320 (17%)

Query: 228 RVSDTVRMLGAMRRQEDNASH------------PDHVTYTTVVSALVKAGSMDRARQVLA 275
           RV+ T  +  ++RR   ++SH            P   TY  +V  L  AG MD   +V  
Sbjct: 5   RVAATAALRSSLRRACSSSSHTADPELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQK 64

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-- 333
           EM+  G   ++ T     +  C++ +   A  ++    +D K+  D V    +I G +  
Sbjct: 65  EMSESGFCMDKFTVGCFAQALCKEGRWSDALVMIER--EDFKL--DTVLCTQMISGLMEA 120

Query: 334 -LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
            L D+   A++F + MR     P  ++Y TL+  F    Q     ++ + M+++     +
Sbjct: 121 SLFDE---AISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEG-CNPN 176

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY----GSLANG--------ISL 440
              +N LV  YC       A ++++RM + G  P    Y    GS+  G        ++L
Sbjct: 177 PSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLAL 236

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
           A K  E +L        C + K  VN  +                A        F  A +
Sbjct: 237 AEKVYEEML-----ASSCVLNK--VNTAN---------------FARCLCGMGKFDMAFQ 274

Query: 501 IVACMEEHGIPPNKTKYKKI 520
           I+  M   G  P+ + Y K+
Sbjct: 275 IIKVMMGKGFVPDTSTYSKV 294


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 196/446 (43%), Gaps = 73/446 (16%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           SG +P V  ++ ++S    +G+     SV                D +S S PD   YN 
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSV---------------LDRMSVS-PDVVTYNT 209

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +L +  + GK K+ +++ D+M +    PDV+TY ++I+   R S     + +L+ + + G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEGDDD 182
            T  + T+  LV                   +EGR D   K + ++              
Sbjct: 270 CTPDVVTYNVLVNGIC---------------KEGRLDEAIKFLNDM-------------- 300

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                          PSS          PN   +  +++   + GR  D  ++L  M R+
Sbjct: 301 ---------------PSS-------GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 P  VT+  +++ L + G + RA  +L +M + G   N ++YN LL G+C++ ++
Sbjct: 339 ---GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D+A E L  M       PD+V+YN ++           A+   N++ ++G +P  I+Y T
Sbjct: 396 DRAIEYLERMVSRG-CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++   A + +   A K+ DEM R   +K D + ++ LV G  R G V+EA +     +  
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEM-RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 423 GFYPNVATYGSLANGISLARKPGEAL 448
           G  PN  T+ S+  G+  +R+   A+
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAI 539



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/474 (22%), Positives = 212/474 (44%), Gaps = 39/474 (8%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           KF +  +   + PD      ++     LGK +K  ++ + +   GA PDV+TYNVMI   
Sbjct: 123 KFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGY 182

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
            +A   +  + VL+R   M ++  + T+ +++ +    G L+ A  ++  M +  RD   
Sbjct: 183 CKAGEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ--RDCYP 237

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
                D+  Y+   E    D        L + +          +   P+   Y  L+ G 
Sbjct: 238 -----DVITYTILIEATCRDSGVGHAMKLLDEMRD--------RGCTPDVVTYNVLVNGI 284

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
             EGR+ + ++ L  M     +   P+ +T+  ++ ++   G    A ++LA+M R G  
Sbjct: 285 CKEGRLDEAIKFLNDM---PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            + +T+NIL+   C++  + +A ++L +M      +P+ +SYN L+ GF        A+ 
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHG-CQPNSLSYNPLLHGFCKEKKMDRAIE 400

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           +   M +RG  P  ++Y T++ A     + + A ++ +++       V ++ +N +++G 
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV-LITYNTVIDGL 459

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
            + G   +A ++++ M+     P+  TY SL  G+S   K  EA+  + E  ER  ++  
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF-ERMGIRPN 518

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            V  +S +    K  +                 +A++ +  M   G  PN+T Y
Sbjct: 519 AVTFNSIMLGLCKSRQT---------------DRAIDFLVFMINRGCKPNETSY 557



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 192/455 (42%), Gaps = 43/455 (9%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           G+ ++  +  + M   G  PD++    +I+   R  +      +LE +   G    + T+
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITY 175

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVC--KIIRELDLEDYSSENEGDDDDDDEVFE 189
             +++ Y   G++  A +++  M      V    I+R L        + G      EV +
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLC-------DSGKLKQAMEVLD 228

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           +             +L +   P+   YT L++    +  V   +++L  MR   D    P
Sbjct: 229 R-------------MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR---DRGCTP 272

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D VTY  +V+ + K G +D A + L +M   G   N IT+NI+L+  C   +   A++LL
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M       P VV++NILI+          A+    +M   G  P  +SY  L+  F  
Sbjct: 333 ADMLRKG-FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCK 391

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             +   A +  + M+       DIV +N ++   C+ G VE+A  I+ ++   G  P + 
Sbjct: 392 EKKMDRAIEYLERMVSRG-CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY ++ +G++ A K G+A+ L  E++ +                 LKPD     +L    
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAK----------------DLKPDTITYSSLVGGL 494

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            R     +A++     E  GI PN   +  I + +
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 173/415 (41%), Gaps = 74/415 (17%)

Query: 77  FLQLFDQMHEFGAKPDVL-----TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
            +Q F + ++ G K DV      + +  I L +R   + +LV    ++   G+      F
Sbjct: 16  LIQQFHREYKRGNKLDVSCRTSGSISSKIPLGSRKRNRLVLVSAASKVESSGLNGRAQKF 75

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD----DDDDEV 187
           ++L + Y              +   G      +     LED  S N         + +E 
Sbjct: 76  ETLSSGY--------------SNSNGNGHYSSVNSSFALEDVESNNHLRQMVRTGELEEG 121

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F K L N +   + P ++P          TTL++G+   G+     ++L  +   E + +
Sbjct: 122 F-KFLENMVYHGNVPDIIP---------CTTLIRGFCRLGKTRKAAKILEIL---EGSGA 168

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            PD +TY  ++S   KAG ++ A  VL    R+ V  + +TYN +L+  C   ++ +A E
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVL---DRMSVSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 308 LLREMAD----------------------------------DAKIEPDVVSYNILIDGFI 333
           +L  M                                    D    PDVV+YN+L++G  
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A+ F N+M + G  P  I++  ++++   + +   A K+  +MLR       +
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG-FSPSV 344

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V +N+L+   CR GL+  A  I+E+M ++G  PN  +Y  L +G    +K   A+
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI 399



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 155/375 (41%), Gaps = 41/375 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML+    P V  ++ ++   A   D G   ++KL D +  R              PD   
Sbjct: 230 MLQRDCYPDVITYTILIE--ATCRDSGVGHAMKLLDEMRDR-----------GCTPDVVT 276

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N     G+  + ++  + M   G +P+V+T+N++++      R      +L  +L
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML 336

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF  L+      G L  A  I++ M +       +     L  +  E +  
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK-- 394

Query: 181 DDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTT 218
            D   E  E+++     P                           L  K  +P    Y T
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++ G    G+    +++L  MR ++     PD +TY+++V  L + G +D A +   E  
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKD---LKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R+G+  N +T+N ++ G C+  Q D+A + L  M +    +P+  SY ILI+G      +
Sbjct: 512 RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRG-CKPNETSYTILIEGLAYEGMA 570

Query: 339 AGALTFFNEMRARGI 353
             AL   NE+  +G+
Sbjct: 571 KEALELLNELCNKGL 585


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 228/467 (48%), Gaps = 43/467 (9%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++N     GKP++   +F+ + E G +P ++TY  ++    R  R   +  ++ ++ + G
Sbjct: 77  LMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNG 136

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGDDD 182
           +      F +++ A+   G+++ A  I + M++ G +        L ++ Y   N G  +
Sbjct: 137 LKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTL-IKGYG--NAGMPE 193

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           +  ++ + +       S E     +   PN R + +L++ + N+ R+++   ++  M   
Sbjct: 194 ECLKLLDLM-------SQE-----ENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKM--- 238

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
             +   PD VTY T+  A  + G   RA  ++ EM    V  N  T  I++ GYC++ ++
Sbjct: 239 AASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKM 298

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG---ALTFFNEMRARGIAPTKIS 359
             A   L  M +   + P++V +N LI GF+ I D+ G   ALT   E    G+ P  ++
Sbjct: 299 KDALRFLYRMRNYG-VHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEF---GVKPDVVT 354

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           ++T+M A++         ++FD+M++   ++ DI A+++L +GY R G  E+A+ ++  M
Sbjct: 355 FSTIMNAWSSVGLMDKCQEIFDDMVK-AGIEPDIHAFSILAKGYVRAGEPEKAESLLTAM 413

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
            ++G  PNV  + ++ +G   A K   A  +++++   CE+          + P LK  E
Sbjct: 414 GKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKM---CEM---------GICPNLKTFE 461

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
            L+    +    A   +KA E++  ME+ G+ P K+  + +    H+
Sbjct: 462 TLIWGYGE----AKEPQKAEELLQIMEQKGVAPVKSTIQLVADAWHA 504



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 199/428 (46%), Gaps = 50/428 (11%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           ++G  P    ++ +++  + SG+    E++K+F       RK  D       KP T+ +N
Sbjct: 134 KNGLKPDSVFFNAMINAFSESGN--VKEAMKIF-------RKMKD----RGCKPTTSTFN 180

Query: 63  AVLNACANLGKPKKFLQLFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
            ++    N G P++ L+L D M  E   KP+  T+N +I+      R      V+ ++  
Sbjct: 181 TLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAA 240

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR----RDVCKIIRELDLEDYSSEN 177
            G+   + T+ +L  AY   G+   AE ++  M+  R       C II    +  Y  E 
Sbjct: 241 SGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGII----INGYCKE- 295

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G   D      ++    ++P             N  I+ +L+KG+++   ++DT  +  
Sbjct: 296 -GKMKDALRFLYRMRNYGVHP-------------NLVIFNSLIKGFLD---ITDTDGVDE 338

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           A+   E+    PD VT++T+++A    G MD+ +++  +M + G+  +   ++IL KGY 
Sbjct: 339 ALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYV 398

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF----FNEMRARGI 353
           +  + +KA+ LL  M     ++P+VV +  +I G+     SAG + +    + +M   GI
Sbjct: 399 RAGEPEKAESLLTAMGKSG-VQPNVVIFTTIISGWC----SAGKMEYASRVYEKMCEMGI 453

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P   ++ TL+  +  + +P+ A ++   M +     V      ++ + +  +GL  EAK
Sbjct: 454 CPNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTI-QLVADAWHALGLANEAK 512

Query: 414 RIIERMKE 421
           RI   ++E
Sbjct: 513 RIKNDVEE 520



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 1/181 (0%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           T +++ L++ G    A+ +   +T  G     ITY  LL    +Q +      L+ ++  
Sbjct: 75  TKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEK 134

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +  ++PD V +N +I+ F    +   A+  F +M+ RG  PT  ++ TL+K +  +  P+
Sbjct: 135 NG-LKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPE 193

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
              K+ D M ++  VK +   +N L+  +C    + EA  ++ +M  +G  P+V TY +L
Sbjct: 194 ECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTL 253

Query: 435 A 435
           A
Sbjct: 254 A 254


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 141/592 (23%), Positives = 245/592 (41%), Gaps = 109/592 (18%)

Query: 6   YLPHVKAWSTVVSRLAASGDDGPVESVKLFDV-----------VVKRVRKFS-DPDIVSD 53
           Y   V +++++++ L  +G  G V  ++L  +           V+   RK + D      
Sbjct: 119 YKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELK 178

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL 112
            K     YN +LN+ A  G   +  Q++ +M E    P++ TYN M+   C   + +   
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEAN 238

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRD---------- 160
            +V  +I+E G+     T+ SL+  Y    DL+ A  +   M  +  RR+          
Sbjct: 239 QYV-SKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHG 297

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
           +C + R +D     + +      DDE F                      P  R YT L+
Sbjct: 298 LC-VARRID----EAMDLFVKMKDDECF----------------------PTVRTYTVLI 330

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
           K      R S+ + ++  M   E+    P+  TYT ++ +L      ++AR++L +M   
Sbjct: 331 KSLCGSERKSEALNLVKEM---EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEK 387

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMAD-------------------------- 314
           G+  N ITYN L+ GYC++  I+ A +++  M                            
Sbjct: 388 GLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAM 447

Query: 315 -------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
                  + K+ PDVV+YN LIDG     +   A    + M  RG+ P + +YT+++ + 
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             S + + A  +FD  L    V  ++V +  L++GYC+ G V+EA  ++E+M      PN
Sbjct: 508 CKSKRVEEACDLFDS-LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566

Query: 428 VATYGSLANGISLARKPGEALLLWK---EIKERCEVKKEGV-------NADSD------- 470
             T+ +L +G+    K  EA LL +   +I  +  V  + +       + D D       
Sbjct: 567 SLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQ 626

Query: 471 --LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L    KPD            R      A +++A M E+G+ P+   Y  +
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 114/471 (24%), Positives = 208/471 (44%), Gaps = 31/471 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P    Y  ++ +     +  + L L  +M E G KP++ TY V+I  LC++   +     
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARE- 379

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLED 172
           +L ++LE G+   + T+ +L+  Y   G +E A  +V+ M E R+     +   EL ++ 
Sbjct: 380 LLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM-ESRKLSPNTRTYNEL-IKG 437

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           Y   N         V + +    +N   E  +LP         Y +L+ G    G     
Sbjct: 438 YCKSN---------VHKAM--GVLNKMLERKVLPDVVT-----YNSLIDGQCRSGNFDSA 481

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            R+L  M    D    PD  TYT+++ +L K+  ++ A  +   + + GV  N + Y  L
Sbjct: 482 YRLLSLMN---DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTAL 538

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + GYC+  ++D+A  +L +M     + P+ +++N LI G         A     +M   G
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSKNCL-PNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + PT  + T L+           A   F +ML     K D   +   ++ YCR G + +A
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG-TKPDAHTYTTFIQTYCREGRLLDA 656

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CEVKKEGVNADSDL 471
           + ++ +M+ENG  P++ TY SL  G     +   A  + K +++  CE  +    +    
Sbjct: 657 EDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKH 716

Query: 472 PPPLKPDEELLDALADICVRAAF--FRKALEIVACMEEHGIPPNKTKYKKI 520
              +K  ++   +  ++C  +    F   +E++  M EH + PN   Y+K+
Sbjct: 717 LLEMKYGKQK-GSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKL 766



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 199/496 (40%), Gaps = 97/496 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML    LP V  +++++     SG+         FD   + +   +D  +V    PD   
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGN---------FDSAYRLLSLMNDRGLV----PDQWT 499

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y +++++     + ++   LFD + + G  P+V+ Y  +I    +A +      +LE++L
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-----DVCKIIRELDLEDYS 174
                    TF +L+      G L+ A  + + M + G +     D   I R L      
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLL------ 613

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +GD D     F+++L +   P             ++  YTT ++ Y  EGR+ D   
Sbjct: 614 --KDGDFDHAYSRFQQMLSSGTKP-------------DAHTYTTFIQTYCREGRLLDAED 658

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M+  MR   +N   PD  TY++++      G  + A  VL  M   G   ++ T+  L+K
Sbjct: 659 MMAKMR---ENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIK 715

Query: 295 G-----YCQQ-------------LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
                 Y +Q             ++ D   ELL +M + + + P+  SY  LI G   + 
Sbjct: 716 HLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHS-VTPNAKSYEKLILGICEVG 774

Query: 337 DSAGALTFFNEM-RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--------LRDP 387
           +   A   F+ M R  GI+P+++ +  L+       +   A KV D+M        L   
Sbjct: 775 NLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESC 834

Query: 388 RVKV--------------------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +V +                          D +AW ++++G  + GLVE    +   M++
Sbjct: 835 KVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEK 894

Query: 422 NGFYPNVATYGSLANG 437
           NG   +  TY  L  G
Sbjct: 895 NGCKFSSQTYSLLIEG 910



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 108/536 (20%), Positives = 202/536 (37%), Gaps = 132/536 (24%)

Query: 25  DDGPVESVKLFDVVVKRV----RKFSDPDIVSDS-----KPDTAAYNAVLNACANLGKPK 75
           DD    +V+ + V++K +    RK    ++V +      KP+   Y  ++++  +  K +
Sbjct: 316 DDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFE 375

Query: 76  KFLQLFDQMHEFGAKPDVLTYNVMIK-LCARA-------------SRK------------ 109
           K  +L  QM E G  P+V+TYN +I   C R              SRK            
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELI 435

Query: 110 --------HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
                   H  + VL ++LE  +   + T+ SL+      G+ + A  ++  M +     
Sbjct: 436 KGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMND----- 490

Query: 162 CKIIRELDLEDYSSENEGDD-------DDDDEVFEKLLPNSINPSSE------------- 201
               R L  + ++  +  D        ++  ++F+ L    +NP+               
Sbjct: 491 ----RGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAG 546

Query: 202 ---------PPLLPKTFAPNSRIYTTLMKGYMNEGRV--------------------SDT 232
                      +L K   PNS  +  L+ G   +G++                    +DT
Sbjct: 547 KVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDT 606

Query: 233 V---RML---------GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
           +   R+L            ++   + + PD  TYTT +    + G +  A  ++A+M   
Sbjct: 607 ILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMREN 666

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID---- 336
           GV  +  TY+ L+KGY    Q + A ++L+ M D    EP   ++  LI   + +     
Sbjct: 667 GVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG-CEPSQHTFLSLIKHLLEMKYGKQ 725

Query: 337 --------------DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
                         +    +    +M    + P   SY  L+         ++A KVFD 
Sbjct: 726 KGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDH 785

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           M R+  +    + +N L+   C++    EA ++++ M   G  P + +   L  G+
Sbjct: 786 MQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 206/484 (42%), Gaps = 96/484 (19%)

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQ 132
           K  +   LF +M + GA  +    N ++   AR    + +  ++E+++EM I   + TF 
Sbjct: 285 KTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFG 344

Query: 133 SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL 192
            L+                         +CK  R               DD  EV EK+ 
Sbjct: 345 ILI-----------------------NHMCKFRRV--------------DDALEVLEKM- 366

Query: 193 PNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
               +   E   +  +  P+  IY TL+ G    GR  + + ++  MR Q+  A  PD +
Sbjct: 367 ----SGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCA--PDTI 420

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TY  ++    KAG +++ +++  EM + GV  N +T N L+ G C+  ++  A     E 
Sbjct: 421 TYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVE- 479

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
           A    ++ D V+Y  LI+ F  +++   A+  FNEM   G +P  I Y TL+  F+ + +
Sbjct: 480 AQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGR 539

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM-------------------------- 406
              A+ V  E L+   ++ D V +N L+ G+CR                           
Sbjct: 540 MADASFVLAE-LKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYN 598

Query: 407 ---------GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
                    G ++ A++++ +M + G  P VATYG++ N   L     EA+ ++K++K  
Sbjct: 599 TLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMK-- 656

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                    A S +PP       L+++L     +    + A+ ++  M+  G+ PN T Y
Sbjct: 657 ---------AASKVPPNTVIYNILINSLC----KNNKVKSAVSLMEDMKIWGVTPNTTTY 703

Query: 518 KKIY 521
             I+
Sbjct: 704 NAIF 707



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 167/386 (43%), Gaps = 57/386 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASRKHLLV 113
           +PD   YN +++    +G+ ++ L L ++M  + G  PD +TYN +I    +A       
Sbjct: 380 EPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGK 439

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLED 172
            + + + + G+   + T  +LV      G +  A    V+A R G +             
Sbjct: 440 ELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMK------------- 486

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                 GD                                +  YT L+  + N       
Sbjct: 487 ------GD--------------------------------AVTYTALINAFCNVNNFEKA 508

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M +   +   PD + Y T++S   +AG M  A  VLAE+ ++G+  + + YN L
Sbjct: 509 MELFNEMLK---SGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTL 565

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+C+  +  +  E+L+EM ++A ++PD ++YN LI       D   A     +M   G
Sbjct: 566 IGGFCRTNKFHRVFEMLKEM-EEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAG 624

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + PT  +Y  ++ A+ L+     A ++F +M    +V  + V +N+L+   C+   V+ A
Sbjct: 625 VVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSA 684

Query: 413 KRIIERMKENGFYPNVATYGSLANGI 438
             ++E MK  G  PN  TY ++  G+
Sbjct: 685 VSLMEDMKIWGVTPNTTTYNAIFKGL 710



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 23/363 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  YN +++     G+ +K  +LFD+M++ G  P+V+T N ++    R  R    V  
Sbjct: 417 PDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNF 476

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
                  G+     T+ +L+ A+    + E A  +   M +       I+    +  +S 
Sbjct: 477 FVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQ 536

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D   V  +L    I P             ++  Y TL+ G+    +      M
Sbjct: 537 A--GRMADASFVLAELKKLGIRP-------------DTVCYNTLIGGFCRTNKFHRVFEM 581

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M   E+    PD +TY T+++   K G +  A++V+ +M + GV     TY  ++  
Sbjct: 582 LKEM---EEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINA 638

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC     ++A E+ ++M   +K+ P+ V YNILI+     +    A++   +M+  G+ P
Sbjct: 639 YCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTP 698

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR--DPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
              +Y  + K        K   KVF+ M R  +     D +   +L E    +G +E  K
Sbjct: 699 NTTTYNAIFKGL---RDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLK 755

Query: 414 RII 416
           + +
Sbjct: 756 KFV 758



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 137/330 (41%), Gaps = 31/330 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V   +T+V  +  +G    V S   F V  +R             K D   
Sbjct: 445 MNKEGVAPNVVTVNTLVGGMCRTGR---VSSAVNFFVEAQR----------RGMKGDAVT 491

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A++NA  N+   +K ++LF++M + G  PD + Y  +I   ++A R     FVL  + 
Sbjct: 492 YTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELK 551

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           ++GI      + +L+  +           +++ M E       I     L  Y+S+N GD
Sbjct: 552 KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYN-TLIAYASKN-GD 609

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                +V  K++   +              P    Y  ++  Y   G  ++ + +   M+
Sbjct: 610 LKFAQKVMRKMIKAGV-------------VPTVATYGAVINAYCLNGNGNEAMEIFKDMK 656

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               +   P+ V Y  ++++L K   +  A  ++ +M   GV  N  TYN + KG   + 
Sbjct: 657 AA--SKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEK 714

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++K  E +  M + A   PD ++  IL +
Sbjct: 715 DLEKVFEFMDRMIEHA-CNPDYITMEILTE 743


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 198/444 (44%), Gaps = 36/444 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V   + ++  +  SG+D  V S  L +++ +++             PD A +N +
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSF-LKEMLKRKI------------CPDVATFNIL 199

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G  +K   L  +M + G  P ++TYN ++    +  R    + +L+ +   G+
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + T+  L+        +     +++ MR+      ++I   ++  Y++   G  ++ 
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK------RMIHPNEVT-YNTLINGFSNEG 312

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             +    L N         +L    +PN   +  L+ G+++EG   + ++M   M   E 
Sbjct: 313 KVLIASQLLN--------EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM---EA 361

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P  V+Y  ++  L K    D AR     M R GV   RITY  ++ G C+   +D+
Sbjct: 362 KGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDE 421

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  LL EM+ D  I+PD+V+Y+ LI+GF  +     A      +   G++P  I Y+TL+
Sbjct: 422 AVVLLNEMSKDG-IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                    K A ++++ M+ +   + D   +N+LV   C+ G V EA+  +  M  +G 
Sbjct: 481 YNCCRMGCLKEAIRIYEAMILEGHTR-DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539

Query: 425 YPNVATYGSLANGISLARKPGEAL 448
            PN  ++  L NG       GE L
Sbjct: 540 LPNTVSFDCLINGYG---NSGEGL 560



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 119/533 (22%), Positives = 198/533 (37%), Gaps = 79/533 (14%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L  G+   +K     V R+  +G    +      D  V  + + S   I     PD   Y
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI----DPDIVTY 441

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           +A++N    +G+ K   ++  +++  G  P+ + Y+ +I  C R       + + E ++ 
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G T    TF  LV +    G +  AE  ++ M                           
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS------------------------- 536

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                  + +LPN+++                  +  L+ GY N G   + ++       
Sbjct: 537 -------DGILPNTVS------------------FDCLINGYGNSG---EGLKAFSVFDE 568

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                 HP   TY +++  L K G +  A + L  +  +    + + YN LL   C+   
Sbjct: 569 MTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGN 628

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISY 360
           + KA  L  EM   + I PD  +Y  LI G      +  A+ F  E  ARG + P K+ Y
Sbjct: 629 LAKAVSLFGEMVQRS-ILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMY 687

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T  +     + Q K A   F E + +     DIV  N +++GY RMG +E+   ++  M 
Sbjct: 688 TCFVDGMFKAGQWK-AGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMG 746

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI--------KERCEVKKEGVNADSDLP 472
                PN+ TY  L +G S  +    + LL++ I        K  C     G+   + L 
Sbjct: 747 NQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLE 806

Query: 473 PPLK-----------PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
             LK            D    + L   C        A ++V  M   GI  +K
Sbjct: 807 IGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDK 859



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 38/335 (11%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +AP    Y T++  Y  +GR    + +L  M+ +  +A   D  TY  ++  L ++  + 
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDA---DVCTYNMLIHDLCRSNRIA 280

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +   +L +M +  +  N +TYN L+ G+  + ++  A +LL EM     + P+ V++N L
Sbjct: 281 KGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG-LSPNHVTFNAL 339

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG I   +   AL  F  M A+G+ P+++SY  L+     +++  LA   +  M R+  
Sbjct: 340 IDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG- 398

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V V  + +  +++G C+ G ++EA  ++  M ++G  P++ TY +L NG     K G   
Sbjct: 399 VCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC---KVGR-- 453

Query: 449 LLWKEIKE-RCEVKKEGVNADSDLPPPL-------------------------KPDEELL 482
             +K  KE  C + + G++ +  +   L                           D    
Sbjct: 454 --FKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTF 511

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           + L     +A    +A E + CM   GI PN   +
Sbjct: 512 NVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 546



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 147/342 (42%), Gaps = 58/342 (16%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L +   P+   +  L+     EG    +  +   M++ E +   P  VTY TV+    K
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYL---MQKMEKSGYAPTIVTYNTVLHWYCK 240

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G    A ++L  M   GV A+  TYN+L+   C+  +I K   LLR+M     I P+ V
Sbjct: 241 KGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM-IHPNEV 299

Query: 324 SYNILIDGF-----------------------------ILIDD--SAG----ALTFFNEM 348
           +YN LI+GF                              LID   S G    AL  F  M
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
            A+G+ P+++SY  L+     +++  LA   +  M R+  V V  + +  +++G C+ G 
Sbjct: 360 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG-VCVGRITYTGMIDGLCKNGF 418

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGVNA 467
           ++EA  ++  M ++G  P++ TY +L NG     K G     +K  KE  C + + G   
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFC---KVGR----FKTAKEIVCRIYRVG--- 468

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
                  L P+  +   L   C R    ++A+ I   M   G
Sbjct: 469 -------LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/509 (21%), Positives = 187/509 (36%), Gaps = 95/509 (18%)

Query: 57   DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
            DT  YN +L A    G   K + LF +M +    PD  TY  +I  LC +      ++F 
Sbjct: 612  DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 671

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             E      +      +   V      G  +      + M         +     ++ YS 
Sbjct: 672  KEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSR 731

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              + +  +D      LLP   N +           PN   Y  L+ GY     VS +  +
Sbjct: 732  MGKIEKTND------LLPEMGNQNG---------GPNLTTYNILLHGYSKRKDVSTSFLL 776

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                R    N   PD +T  ++V  + ++  ++   ++L      GV  +R T+N+L+  
Sbjct: 777  ---YRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISK 833

Query: 296  YCQQLQIDKAKELLREMAD----------DA------------------------KIEPD 321
             C   +I+ A +L++ M            DA                         I P+
Sbjct: 834  CCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPE 893

Query: 322  VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
               Y  LI+G   + D   A     EM A  I P  ++ + +++A A   +   A  +  
Sbjct: 894  SRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLR 953

Query: 382  EMLR----------------------------------DPRVKVDIVAWNMLVEGYCRMG 407
             ML+                                  +  +K+D+V++N+L+ G C  G
Sbjct: 954  FMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKG 1013

Query: 408  LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG--EALLLWKEIKERCEVKKEGV 465
             +  A  + E MK +GF  N  TY +L  G+ LAR+     A ++ K++  R  +    +
Sbjct: 1014 DMALAFELYEEMKGDGFLANATTYKALIRGL-LARETAFSGADIILKDLLARGFITSMSL 1072

Query: 466  NADSDLPPPLKPDEELLDALAD---ICVR 491
            + DS     LK   E L AL +   +C R
Sbjct: 1073 SQDSH--RNLKMAMEKLKALQNDIAVCHR 1099



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++L+  Y R G+++++  I   M   GF P+V T  ++   +    K GE + +W  +
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVV---KSGEDVSVWSFL 181

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           KE              L   + PD    + L ++      F K+  ++  ME+ G  P  
Sbjct: 182 KEM-------------LKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 228

Query: 515 TKYKKI 520
             Y  +
Sbjct: 229 VTYNTV 234


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 185/405 (45%), Gaps = 22/405 (5%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRK 109
           +S+ +PD    N ++N   + G+         ++ + G +P+ +T N ++K LC     K
Sbjct: 86  LSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVK 145

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
             L F  +++L  G  L   ++  L+      G+   A  +++ +         +I  + 
Sbjct: 146 EALRF-HDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMI 204

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           ++    +   D+  D                   ++ K  +P+   Y+ L+ G+   G++
Sbjct: 205 IDRLCKDTLVDEAYD---------------LYTEMVGKGISPDVVTYSILVSGFCIVGQL 249

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           +  + +L  M  +  N   PD  TYT +V AL K G +  A  VLA M +  V  + + Y
Sbjct: 250 NRAIDLLNEMVLENIN---PDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVY 306

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           + L+ GYC   +++ AK +   M     + PDV  Y+I+I+G   I     AL  F E+ 
Sbjct: 307 STLMDGYCLVNEVNNAKRVFYTMTQ-MGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIH 365

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            + + P  ++YT+L+     S +      +FDEML D     D++ +N L++  C+ G +
Sbjct: 366 QKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEML-DRGQPPDVITYNNLIDALCKNGHL 424

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           + A  +  +MK+    PNV T+  L +G+    +   AL  ++++
Sbjct: 425 DRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDL 469



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 32/338 (9%)

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
           S    +L   + PN+    TLMKG   EG+V + +R    +  Q    S    ++Y  ++
Sbjct: 114 SGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSG---ISYGILI 170

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + + K G    A ++L  + R  +  N + Y++++   C+   +D+A +L  EM     I
Sbjct: 171 NGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKG-I 229

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            PDVV+Y+IL+ GF ++     A+   NEM    I P   +YT L+ A     + K A  
Sbjct: 230 SPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAEN 289

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           V   M++   V +D+V ++ L++GYC +  V  AKR+   M + G  P+V  Y  + NG+
Sbjct: 290 VLAVMVK-ACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGL 348

Query: 439 SLARKPGEALLLWKEIKER--------------CEVKKEGVNADSDL---------PPPL 475
              ++  EAL L++EI ++              C  K   ++   DL         PP +
Sbjct: 349 CKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDV 408

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                L+DAL     +     +A+ +   M++  I PN
Sbjct: 409 ITYNNLIDALC----KNGHLDRAIALFNKMKDQAIRPN 442



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/464 (21%), Positives = 185/464 (39%), Gaps = 99/464 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P+    +T++  L   G              VK   +F D  +    +    +
Sbjct: 119 ILKLGYQPNTITLNTLMKGLCLEGK-------------VKEALRFHDKVLAQGFRLSGIS 165

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G+ +  ++L  ++  +  +P+V+ Y+++I    R  +  L+    +   
Sbjct: 166 YGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIID---RLCKDTLVDEAYDLYT 222

Query: 121 EM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--------------------REG 157
           EM   GI+  + T+  LV+ +   G L  A  ++  M                    +EG
Sbjct: 223 EMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEG 282

Query: 158 RRD--------VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP--PLLPK 207
           +          + K    LD+  YS+  +G            L N +N +      +   
Sbjct: 283 KVKEAENVLAVMVKACVNLDVVVYSTLMDG----------YCLVNEVNNAKRVFYTMTQM 332

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              P+   Y+ ++ G     RV + + +   + ++      PD VTYT+++  L K+G +
Sbjct: 333 GVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKN---MVPDTVTYTSLIDCLCKSGRI 389

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
                +  EM   G P + ITYN L+   C+   +D+A  L  +M D A I P+V ++ I
Sbjct: 390 SYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQA-IRPNVYTFTI 448

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+DG   +     AL FF ++  +G      +YT                          
Sbjct: 449 LLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYT-------------------------- 482

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
                     +++ G C+ GL++EA  +  RM++NG   +  T+
Sbjct: 483 ----------VMINGLCKEGLLDEALALQSRMEDNGCISDAVTF 516



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 22/229 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+ ++N    + +  + L LF+++H+    PD +TY  +I    ++ R   +  +
Sbjct: 336 PDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDL 395

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
            + +L+ G    + T+ +L+ A    G L+ A  +   M++   R +V      LD    
Sbjct: 396 FDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLD---- 451

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                G   +  E F+ LL              K +  N R YT ++ G   EG + +  
Sbjct: 452 GLCKVGRLKNALEFFQDLLT-------------KGYCLNVRTYTVMINGLCKEGLLDEA- 497

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
             L    R EDN    D VT+  ++ A       D+A +++ EM   G+
Sbjct: 498 --LALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 214/460 (46%), Gaps = 45/460 (9%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           V+N    +G  ++ L++F ++ EFG +P V  YN ++      +R  ++  +   +   G
Sbjct: 120 VINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDG 179

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEGDDD 182
               + T+  L+ A                 +  R D  CK++ E+        N+G + 
Sbjct: 180 KEPNVYTYNILLKALC---------------KNNRVDGACKLLVEMS-------NKGCEP 217

Query: 183 DDDEVFEKLLPNS-INPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           D       +   S +    E   L   F PN  +Y  L+ G+  E +V +   +LG M  
Sbjct: 218 DVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVE 277

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +      P+ +TY+TV+S+L   G+++ A  V A+M   G   N  T+  L+KGY  + +
Sbjct: 278 K---GIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGR 334

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + +A  +   MA++   EP+VV+YN LI G         A++  ++M   G +P   +Y 
Sbjct: 335 VLEALNIWNRMAEEG-FEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYG 393

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+  FA +     A++++++M+ +  +  ++V +  +V   CR  +  +A  +IE+M  
Sbjct: 394 ALIDGFAKAGDLVGASEIWNKMMTNGCIP-NVVVYTSMVNVLCRSSMFSQAWSLIEKMST 452

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
           +   PN  T+ +   G+  + +   A+ L+      C++++ G +      P +K   E+
Sbjct: 453 DNCPPNTVTFNTFIKGLCCSGRVECAINLF------CQMEQYGCS------PNIKTYNEV 500

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
           LD L    ++    ++ALE+V  MEE G+  N   Y  I+
Sbjct: 501 LDGL----LKENRIKEALELVTEMEEKGMELNLVTYNTIF 536



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 196/426 (46%), Gaps = 43/426 (10%)

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           LTY +MI+   R      + ++L+++   GI+     F +++  Y   G  E A  +   
Sbjct: 80  LTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYR 139

Query: 154 MRE-GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
           +RE G +   KI   L L+   SEN        ++ E +  N      EP         N
Sbjct: 140 IREFGCQPTVKIYNHL-LDAMLSENR------FQMIEPIYSNMKRDGKEP---------N 183

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  L+K      RV    ++L  M    +    PD V+YTTV+S++ K G ++ AR+
Sbjct: 184 VYTYNILLKALCKNNRVDGACKLLVEM---SNKGCEPDVVSYTTVISSMSKLGKVEEARE 240

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +      I    N   YN L+ G+C++ ++ +   LL +M +   I+P+V++Y+ +I   
Sbjct: 241 L-----SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKG-IDPNVITYSTVISSL 294

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
             I +   AL  + +M  RG +P   ++T+LMK + +  +   A  +++ M  +   + +
Sbjct: 295 SGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEG-FEPN 353

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +VA+N L+ G C  G + EA  +  +M+ NG  PNV+TYG+L +G + A     A  +W 
Sbjct: 354 VVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWN 413

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           ++                +     P+  +  ++ ++  R++ F +A  ++  M     PP
Sbjct: 414 KM----------------MTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPP 457

Query: 513 NKTKYK 518
           N   + 
Sbjct: 458 NTVTFN 463



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 193/450 (42%), Gaps = 39/450 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V +++TV+S ++  G              V+  R+ S        +P+ + 
Sbjct: 210 MSNKGCEPDVVSYTTVISSMSKLGK-------------VEEARELS-----IRFQPNVSV 251

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N      K K+   L  QM E G  P+V+TY+ +I   +      L + V  ++ 
Sbjct: 252 YNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMF 311

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF SL+  Y   G +  A  I   M E   +   +     +    S   G 
Sbjct: 312 VRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCS--HGK 369

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   V  K+  N               +PN   Y  L+ G+   G   D V       
Sbjct: 370 MGEAVSVSSKMERNGC-------------SPNVSTYGALIDGFAKAG---DLVGASEIWN 413

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   N   P+ V YT++V+ L ++    +A  ++ +M+    P N +T+N  +KG C   
Sbjct: 414 KMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSG 473

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++ A  L  +M +     P++ +YN ++DG +  +    AL    EM  +G+    ++Y
Sbjct: 474 RVECAINLFCQM-EQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTY 532

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            T+   F    + + A K+  +ML    VK D + +N L   YC  G V+ A ++++++ 
Sbjct: 533 NTIFGGFCNVGKFEEALKLLGKMLVGG-VKPDAITYNTLTYAYCMQGKVKTAIQLLDKLS 591

Query: 421 ENG-FYPNVATYGSLANGISLARKPGEALL 449
             G + P VA Y SL  GI       EA+L
Sbjct: 592 AGGKWVPEVAAYTSLLWGICNQIGVEEAVL 621



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 205/453 (45%), Gaps = 44/453 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M R G  P+V  ++ ++  L  +   DG  +      ++V+   K  +PD+VS       
Sbjct: 175 MKRDGKEPNVYTYNILLKALCKNNRVDGACK------LLVEMSNKGCEPDVVS------- 221

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y  V+++ + LGK ++  +L  +      +P+V  YN +I    R  +   +  +L ++
Sbjct: 222 -YTTVISSMSKLGKVEEARELSIRF-----QPNVSVYNALINGFCREYKVKEVFLLLGQM 275

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL--DLEDYSSEN 177
           +E GI   + T+ +++++  G G++E+A  +   M          +R    ++  ++S  
Sbjct: 276 VEKGIDPNVITYSTVISSLSGIGNVELALAVWAKM---------FVRGCSPNVYTFTSLM 326

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +G       V E L  N  N  +E     + F PN   Y TL+ G  + G++ + V +  
Sbjct: 327 KGYFMRG-RVLEAL--NIWNRMAE-----EGFEPNVVAYNTLIHGLCSHGKMGEAVSVSS 378

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M R   N   P+  TY  ++    KAG +  A ++  +M   G   N + Y  ++   C
Sbjct: 379 KMER---NGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLC 435

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +     +A  L+ +M+ D    P+ V++N  I G         A+  F +M   G +P  
Sbjct: 436 RSSMFSQAWSLIEKMSTD-NCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNI 494

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            +Y  ++      ++ K A ++  EM  +  +++++V +N +  G+C +G  EEA +++ 
Sbjct: 495 KTYNEVLDGLLKENRIKEALELVTEM-EEKGMELNLVTYNTIFGGFCNVGKFEEALKLLG 553

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           +M   G  P+  TY +L     +  K   A+ L
Sbjct: 554 KMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQL 586



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/295 (17%), Positives = 111/295 (37%), Gaps = 65/295 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G +P+V  ++++V+ L  S          +F      + K S      +  P+T  
Sbjct: 415 MMTNGCIPNVVVYTSMVNVLCRS---------SMFSQAWSLIEKMS----TDNCPPNTVT 461

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N  +      G+ +  + LF QM ++G  P++ TYN ++    + +R    + ++  + 
Sbjct: 462 FNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEME 521

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+ L + T+ ++   +   G  E A  ++  M  G                       
Sbjct: 522 EKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVG----------------------- 558

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P++  Y TL   Y  +G+V   +++L  + 
Sbjct: 559 ---------------------------GVKPDAITYNTLTYAYCMQGKVKTAIQLLDKL- 590

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                   P+   YT+++  +     ++ A   L +M   G+  N  T+N L++G
Sbjct: 591 -SAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRG 644



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/250 (18%), Positives = 96/250 (38%), Gaps = 55/250 (22%)

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A    R +A+    +   ++Y I+I+      D  G      +M+  GI+ ++  +  ++
Sbjct: 62  ASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVI 121

Query: 365 KAF-----------------ALSSQP--KLANKVFDEMLRDPRVKV-------------- 391
             +                     QP  K+ N + D ML + R ++              
Sbjct: 122 NTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKE 181

Query: 392 -DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++  +N+L++  C+   V+ A +++  M   G  P+V +Y ++ + +S   K  EA   
Sbjct: 182 PNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEA--- 238

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            +E+  R                  +P+  + +AL +   R    ++   ++  M E GI
Sbjct: 239 -RELSIR-----------------FQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGI 280

Query: 511 PPNKTKYKKI 520
            PN   Y  +
Sbjct: 281 DPNVITYSTV 290


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 205/467 (43%), Gaps = 49/467 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R   +PH  + + ++      G         L D   K + K     ++S   PDT  
Sbjct: 156 MARKSQIPHFPSCTNLIRGFIRKG---------LVDEACKTLNKM----VMSGGVPDTIT 202

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+      G+ +  L L + M   G  PD +TYN +I+        +  V      L
Sbjct: 203 YNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQAVNFWRDQL 262

Query: 121 EMGI---TLCMTTFQSLVAAYVGFG-DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             G     +  T    LV  Y G    LE+ E +  AM     D+      ++L    + 
Sbjct: 263 RKGCPPYLITYTVLIELVCKYCGAARALEVLEDM--AMEGCYPDIVTYNSLVNL----TS 316

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +G  +D   V   LL + +              PN+  Y TL+   +N G   +   +L
Sbjct: 317 KQGKYEDTALVILNLLSHGMQ-------------PNAVTYNTLIHSLINHGYWDEVDDIL 363

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M    + +S P HVTY  +++ L K+G +DRA    + M       + ITYN LL G 
Sbjct: 364 KIM---NETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGL 420

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++  ID+  +LL  +   +   P +V+YNI+IDG   +     A   ++EM  +GI P 
Sbjct: 421 CKEGFIDEGIQLLNLLVGTS-CSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPD 479

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           +I++++L   F  + Q + A ++  EM +++ R+K    A+  ++ G CR   V+ A ++
Sbjct: 480 EITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKN--TAYRCVILGLCRQKKVDIAIQV 537

Query: 416 IERMKENGFYPNVATYGSL----ANGISL--ARKPGEALLLWKEIKE 456
           ++ M +    P+   Y +L    A+G  L  A    + L+ WK +K+
Sbjct: 538 LDLMVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLIKWKILKK 584



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 151/340 (44%), Gaps = 21/340 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y  ++          + L++ + M   G  PD++TYN ++ L ++  +      V
Sbjct: 268 PYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALV 327

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  +L  G+     T+ +L+ + +  G  +  + I++ M E       +   + L     
Sbjct: 328 ILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCK 387

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                          LL  +I+  S   ++ +  +P+   Y TL+ G   EG + + +++
Sbjct: 388 SG-------------LLDRAISFYS--TMVTENCSPDIITYNTLLSGLCKEGFIDEGIQL 432

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +      +  P  VTY  V+  L + GSM+ A+++  EM   G+  + IT++ L  G
Sbjct: 433 LNLLV---GTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEITHSSLTWG 489

Query: 296 YCQQLQIDKAKELLREMA-DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           +C+  Q+++A ELL+EM+  + +I+    +Y  +I G         A+   + M      
Sbjct: 490 FCRADQLEEATELLKEMSMKEQRIKN--TAYRCVILGLCRQKKVDIAIQVLDLMVKGQCN 547

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
           P +  Y+ L+KA A     K AN +   +++   +K +I+
Sbjct: 548 PDERIYSALIKAVADGGMLKEANDLHQTLIKWKILKKEIM 587


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 213/476 (44%), Gaps = 47/476 (9%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P ++A + V+S LA S    P  S+  F  +           I     P+   +N +++ 
Sbjct: 170 PSLQAANAVLSALARSPSTSPQASLDAFHSL-----------IALRLHPNHYTFNLLVHT 218

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
             + G     L    +M  FG  PD +TYN ++    R         +L R+ + GI   
Sbjct: 219 HCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPT 278

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMRE---------------GRRDVCKIIRELDLED 172
             T+ +LV+AY   G ++ A  +V+AM                 G     K+     L+D
Sbjct: 279 RATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKD 338

Query: 173 YSSENEGDDDDDDEVFEKLL---------PNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
              E  G    D   +  L+          +++N   E  +  K    +   +  ++KG 
Sbjct: 339 -EMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEE--MREKGVKSSLVTHNIIVKGL 395

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
             EG++ +    LG +    +    PD +TY T++ A  KAG++ +A  ++ EM R G+ 
Sbjct: 396 CREGQLEEA---LGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLK 452

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            +  T N LL   C++ + ++A+ELLR       + PD VSY  ++  +        AL 
Sbjct: 453 MDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFV-PDEVSYGTVMAAYFKEYKPEPALC 511

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV--FDEMLRDPRVKVDIVAWNMLVE 401
            ++EM  R + P+  +Y TL+K   LS+  KL   +   +E++    V  D   +N+++ 
Sbjct: 512 LWDEMIKRKLTPSISTYNTLIKG--LSTMGKLTEAIDKLNELMEMGLVP-DDTTYNIIIH 568

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            YC+ G +E+A +   +M EN F P+V T  +L NG+ L  +  +A+ L++   E+
Sbjct: 569 AYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEK 624



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 190/445 (42%), Gaps = 73/445 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN +++AC    +    L L ++M E G K  ++T+N+++K   R  +    +  
Sbjct: 348 PDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGR 407

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-----------DVCK 163
           LE + E G+T  + T+ +L+ A    G++  A  ++  M R G +           ++CK
Sbjct: 408 LEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 467

Query: 164 IIRELDLEDYSSENEGDDDDDDEV---------FEKLLPNSINPSSEPPL------LPKT 208
             R  + E+            DEV         F++  P       EP L      + + 
Sbjct: 468 EKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKP-------EPALCLWDEMIKRK 520

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             P+   Y TL+KG    G++++ +  L  +         PD  TY  ++ A  K G ++
Sbjct: 521 LTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEM---GLVPDDTTYNIIIHAYCKEGDLE 577

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A Q   +M       + +T N L+ G C   +++KA +L     +  K + DV++YN L
Sbjct: 578 KAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGK-KVDVITYNTL 636

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA--------------LSSQPK 374
           I      +D   AL FF +M  RG+ P   +Y  L+ A +              L+   K
Sbjct: 637 IQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGK 696

Query: 375 LANKVFD----------EMLRDPRVKVDI-----------VAWNMLVEGYCRMGLVEEAK 413
           L  + F           E  +DP VK DI            ++N  ++  C  G ++EAK
Sbjct: 697 LYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAK 756

Query: 414 RIIERMKENGFYPNVATYGSLANGI 438
            +++ M + G   + +TY +L  G+
Sbjct: 757 AVLDEMMQKGMSVDNSTYITLMEGL 781



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 149/347 (42%), Gaps = 55/347 (15%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +P++  Y TL+  +  +G + +   +L  M+++      P   TY T+VSA  + G + 
Sbjct: 240 LSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKE---GIVPTRATYNTLVSAYARLGWIK 296

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  V+  MT  G   +  TYN+L  G CQ  ++D+A +L  EM     + PDVV+YN L
Sbjct: 297 QATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTL 356

Query: 329 IDGFILIDDSAGALTFFNEMRARGI----------------------------------- 353
           +D       S+ AL    EMR +G+                                   
Sbjct: 357 VDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGL 416

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  I+Y TL+ A   +     A  + DEM+R   +K+D    N L+   C+    EEA+
Sbjct: 417 TPDVITYNTLIDASCKAGNVAKAFVLMDEMVRS-GLKMDTFTLNTLLYNLCKEKRYEEAE 475

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            ++    + GF P+  +YG++        KP  AL LW E+ +R             L P
Sbjct: 476 ELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKR------------KLTP 523

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            +     L+  L+ +        +A++ +  + E G+ P+ T Y  I
Sbjct: 524 SISTYNTLIKGLSTM----GKLTEAIDKLNELMEMGLVPDDTTYNII 566



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 198/459 (43%), Gaps = 38/459 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P    ++T+VS  A  G       +K    VV+ +  F         +PD   
Sbjct: 270 MKKEGIVPTRATYNTLVSAYARLG------WIKQATDVVEAMTAFG-------FEPDLWT 316

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFG-AKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           YN +       GK  +  +L D+M + G   PDV+TYN ++  C +  R    + +LE +
Sbjct: 317 YNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEM 376

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDYSSEN 177
            E G+   + T   +V      G LE A   ++ M E     DV      +D    +S  
Sbjct: 377 REKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLID----ASCK 432

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G+      + ++++ + +           TF  N     TL+     E R  +   +L 
Sbjct: 433 AGNVAKAFVLMDEMVRSGLKMD--------TFTLN-----TLLYNLCKEKRYEEAEELL- 478

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
             R        PD V+Y TV++A  K    + A  +  EM +  +  +  TYN L+KG  
Sbjct: 479 --RAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLS 536

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
              ++ +A + L E+ +   + PD  +YNI+I  +    D   A  F N+M      P  
Sbjct: 537 TMGKLTEAIDKLNELMEMGLV-PDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDV 595

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++  TLM    L  + + A K+F+  +   + KVD++ +N L++  C+   V+ A R   
Sbjct: 596 VTCNTLMNGLCLYGRLEKAMKLFESWVEKGK-KVDVITYNTLIQALCKDNDVDTALRFFA 654

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            M+  G  P+V TY  L + +S A +  EA  +  ++ E
Sbjct: 655 DMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNE 693



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 16/194 (8%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           ++ P+  ++N+L+         A AL+  ++M+  G++P  ++Y TL+ A         A
Sbjct: 204 RLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 263

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +   M ++  V      +N LV  Y R+G +++A  ++E M   GF P++ TY  LA 
Sbjct: 264 RTLLARMKKEGIVPTR-ATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAA 322

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+  A K  EA       K + E+++ G+         + PD    + L D C +     
Sbjct: 323 GLCQAGKVDEAF------KLKDEMEQLGI---------VSPDVVTYNTLVDACFKCQRSS 367

Query: 497 KALEIVACMEEHGI 510
            AL ++  M E G+
Sbjct: 368 DALNLLEEMREKGV 381


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/492 (23%), Positives = 206/492 (41%), Gaps = 51/492 (10%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D  P    Y  +++A    G+  + + LF +M E G +P++ TY VMI    + ++    
Sbjct: 69  DCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEG 128

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +L+ ++E G+   + T+ +L+  Y   G +E A+ I                 LDL  
Sbjct: 129 RRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEI-----------------LDLMH 171

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            +S N  +   ++ +       +++ +      +L     P+   Y +L+ G    G + 
Sbjct: 172 SNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLD 231

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              R+L  M    +N   PD  TY+  +  L K G ++ A  +   +   G+ AN + Y 
Sbjct: 232 SAYRLLNLMN---ENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYT 288

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ GYC+  ++D A  LL  M  +  + P+  +YN LIDG         AL     M  
Sbjct: 289 ALIDGYCKAGKMDDANSLLDRMLTEDCL-PNSSTYNALIDGLCKERKVQEALLLMESMIQ 347

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+  T  +YT L+ A         A+++ D+M+     + D+  +   +  +C  G ++
Sbjct: 348 KGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSG-YQPDVYIYTAFIHAFCTRGNIK 406

Query: 411 EAKRIIERMKENGFYPNVATYGSLAN---GISLARKPGEAL-----------------LL 450
           EA+ ++  M E G  P+  TY  + +   G+ L     + L                 L+
Sbjct: 407 EAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLI 466

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
              +KE    K + V     +P     D      +AD+  +   F  ALE+   M EHG 
Sbjct: 467 KHLLKEELTKKYKNVALCDSIPNVFFAD------VADV-WKMMKFETALELFEKMLEHGC 519

Query: 511 PPNKTKYKKIYV 522
            PN   Y K+ +
Sbjct: 520 SPNINTYAKLII 531



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 124/552 (22%), Positives = 226/552 (40%), Gaps = 79/552 (14%)

Query: 8   PHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRV---------RKF 45
           P V+ ++ +V  L  SG             + G   ++  + V++  +         R+ 
Sbjct: 72  PTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRI 131

Query: 46  SDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105
            D  +     P    YNA+++     G  +   ++ D MH     P+  TYN +I    R
Sbjct: 132 LDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCR 191

Query: 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------- 158
               H  + +L ++LE  +T  + T+ SL+      G L+ A  ++  M E         
Sbjct: 192 KKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWT 251

Query: 159 -----RDVCKI--IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP-------SSEPPL 204
                  +CK   I E ++  ++S  E     ++ ++  L+             S    +
Sbjct: 252 YSVFIDTLCKKGRIEEANVL-FNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           L +   PNS  Y  L+ G   E +V + + ++ +M ++    + P   TYT ++ A++K 
Sbjct: 311 LTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVP---TYTILIVAMLKE 367

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G  D A ++L +M   G   +   Y   +  +C +  I +A++++  M +   + PD ++
Sbjct: 368 GDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERG-VMPDALT 426

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y ++ID +  +     A      M   G  P+  +Y+ L+K      + +L  K  +  L
Sbjct: 427 YTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLL---KEELTKKYKNVAL 483

Query: 385 RD--PRVKVDIVA--WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            D  P V    VA  W M+          E A  + E+M E+G  PN+ TY  L  G+  
Sbjct: 484 CDSIPNVFFADVADVWKMMK--------FETALELFEKMLEHGCSPNINTYAKLIIGLCK 535

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             + G A  L+  + ER      GV+          P E + ++L + C     +  A+ 
Sbjct: 536 VGRLGVAQKLFDHMNER------GVS----------PSEAIYNSLLNCCCELGIYGDAVR 579

Query: 501 IVACMEEHGIPP 512
           +V  M EHG  P
Sbjct: 580 LVGAMMEHGHLP 591



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 153/336 (45%), Gaps = 23/336 (6%)

Query: 187 VFEKLLPNSINPS-SEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
           + E  L N +N + S   ++PK     + + YT L+ G    GRV + + +   MR  ED
Sbjct: 11  LVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMR--ED 68

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           +  +P   TYT +V AL ++G    A  + +EM   G   N  TY +++   C++ ++++
Sbjct: 69  DC-YPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEE 127

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
            + +L EM +   + P V +YN LIDG+        A    + M +    P + +Y  L+
Sbjct: 128 GRRILDEMVEKGLV-PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELI 186

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             F        A  +  +ML + R+   +V +N L+ G C++G ++ A R++  M ENG 
Sbjct: 187 CGFCRKKNVHRAMALLSKML-ESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGV 245

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            P+  TY    + +    +  EA +L+  +KE+                 +K +E +  A
Sbjct: 246 VPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEK----------------GIKANEVIYTA 289

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L D   +A     A  ++  M      PN + Y  +
Sbjct: 290 LIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNAL 325



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 93/480 (19%), Positives = 172/480 (35%), Gaps = 115/480 (23%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN++++    +G      +L + M+E G  PD  TY+V I    +  R      +
Sbjct: 212 PSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVL 271

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV---------------QAMREGRRD 160
              + E GI      + +L+  Y   G ++ A +++                A+ +G   
Sbjct: 272 FNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCK 331

Query: 161 VCKIIRELDLEDYSSEN------------------EGDDDDDDEVFEKLLPNSINPSSEP 202
             K+   L L +   +                   EGD D    + ++++ +        
Sbjct: 332 ERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSG------- 384

Query: 203 PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
                 + P+  IYT  +  +   G + +   M+  M  +      PD +TYT V+ A  
Sbjct: 385 ------YQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFER---GVMPDALTYTLVIDAYG 435

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLK--------------GYC----------- 297
             G ++ A  VL  M   G   +  TY+ L+K                C           
Sbjct: 436 GLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADV 495

Query: 298 ----QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
               + ++ + A EL  +M +     P++ +Y  LI G   +     A   F+ M  RG+
Sbjct: 496 ADVWKMMKFETALELFEKMLEHG-CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGV 554

Query: 354 APTKISYTTLMKAFA-----------------------LSSQPKLANKVFDEMLRDPRVK 390
           +P++  Y +L+                           L S   L   +++E  ++ + K
Sbjct: 555 SPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKE-KAK 613

Query: 391 V------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           V            D VAW +L++G  + GL +    ++  M+  G   +  TY  L  G+
Sbjct: 614 VVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 140/348 (40%), Gaps = 35/348 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G    V  ++ ++  +   GD         FD       +  D  + S  +PD   
Sbjct: 345 MIQKGLKCTVPTYTILIVAMLKEGD---------FDYA----HRILDQMVSSGYQPDVYI 391

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A ++A    G  K+   +   M E G  PD LTY ++I         +    VL+R+ 
Sbjct: 392 YTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMF 451

Query: 121 EMGITLCMTTFQSLVAAYV------GFGDLEIAETIVQAMREGRRDVCKIIR-ELDLEDY 173
           + G      T+  L+   +       + ++ + ++I         DV K+++ E  LE +
Sbjct: 452 DTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELF 511

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLMKGYMN 225
               E     +   + KL+   +       +  K F        +P+  IY +L+     
Sbjct: 512 EKMLEHGCSPNINTYAKLII-GLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCE 570

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            G   D VR++GAM    ++   P   +   +   L + GS ++A+ V + + + G   +
Sbjct: 571 LGIYGDAVRLVGAMM---EHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDD 627

Query: 286 RITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGF 332
            + + IL+ G  +    D   ELL  M A   +I P   +Y +LI+G 
Sbjct: 628 EVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQ--TYRMLIEGL 673


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 210/491 (42%), Gaps = 65/491 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP VK  + V+ RL    D+    + ++++V+V+               P    
Sbjct: 157 MVSKGLLPDVKNCNRVL-RLLRDRDNNIDVAREVYNVMVE-----------CGICPTVVT 204

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L++    G  ++ LQL  QM   G  P+ +TYNV++   + +        +++ +L
Sbjct: 205 YNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDML 264

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            +G+ + + T+  L+  Y   G +E A  + + M    R     +   +   Y     G 
Sbjct: 265 RLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLS--RGAVPTVVTYNTIMYGLCKWGR 322

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D      KLL   +N +  P L+          Y TL+ GY   G + +   +   +R
Sbjct: 323 VSDA----RKLLDVMVNKNLMPDLVS---------YNTLIYGYTRLGNIGEAFLLFAELR 369

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +   +  P  VTY T++  L + G +D A ++  EM + G   +  T+   ++G+C+  
Sbjct: 370 YR---SLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMG 426

Query: 301 QIDKAKELLREM----------------------ADDAK------------IEPDVVSYN 326
            +  AKEL  EM                       D +K              PD+++YN
Sbjct: 427 NLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYN 486

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           + IDG   + +   A     +M   G+ P  ++YT+++ A  ++   + A  +F EML  
Sbjct: 487 VFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSK 546

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +   +V + +L+  Y   G ++ A      M E G +PNV TY +L NG+   RK  +
Sbjct: 547 G-IFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQ 605

Query: 447 ALLLWKEIKER 457
           A   + E++ +
Sbjct: 606 AYNFFAEMQAK 616



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 177/390 (45%), Gaps = 44/390 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G +P V  ++T++  L   G     ++ KL DV+V +           +  PD  +
Sbjct: 298 MLSRGAVPTVVTYNTIMYGLCKWGRVS--DARKLLDVMVNK-----------NLMPDLVS 344

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++     LG   +   LF ++      P V+TYN +I    R     + + + + ++
Sbjct: 345 YNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMI 404

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRD----VCKIIRELDLEDYS 174
           + G    + TF + V  +   G+L +A+ +   M  R  + D    + +I+ EL L D  
Sbjct: 405 KHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGD-P 463

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S+  G  ++                    +L + F P+   Y   + G    G + +   
Sbjct: 464 SKAFGMQEE--------------------MLARGFPPDLITYNVFIDGLHKLGNLKEASE 503

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M     N   PDHVTYT+++ A + AG + +AR +  EM   G+  + +TY +L+ 
Sbjct: 504 LVKKMLY---NGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIH 560

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            Y  + ++  A     EM +   + P+V++YN LI+G   +     A  FF EM+A+GI+
Sbjct: 561 SYAVRGRLKLAILHFFEMHEKG-VHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGIS 619

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEML 384
           P K +YT L+         + A +++ +ML
Sbjct: 620 PNKYTYTILINENCNLGHWQEALRLYKDML 649


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 198/444 (44%), Gaps = 36/444 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V   + ++  +  SG+D  V S  L +++ +++             PD A +N +
Sbjct: 193 GFNPSVYTCNAILGSVVKSGEDVSVWSF-LKEMLKRKI------------CPDVATFNIL 239

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G  +K   L  +M + G  P ++TYN ++    +  R    + +L+ +   G+
Sbjct: 240 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 299

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + T+  L+        +     +++ MR+      ++I   ++  Y++   G  ++ 
Sbjct: 300 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK------RMIHPNEVT-YNTLINGFSNEG 352

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             +    L N         +L    +PN   +  L+ G+++EG   + ++M   M   E 
Sbjct: 353 KVLIASQLLN--------EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM---EA 401

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P  V+Y  ++  L K    D AR     M R GV   RITY  ++ G C+   +D+
Sbjct: 402 KGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDE 461

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  LL EM+ D  I+PD+V+Y+ LI+GF  +     A      +   G++P  I Y+TL+
Sbjct: 462 AVVLLNEMSKDG-IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 520

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                    K A ++++ M+ +   + D   +N+LV   C+ G V EA+  +  M  +G 
Sbjct: 521 YNCCRMGCLKEAIRIYEAMILEGHTR-DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 579

Query: 425 YPNVATYGSLANGISLARKPGEAL 448
            PN  ++  L NG       GE L
Sbjct: 580 LPNTVSFDCLINGYG---NSGEGL 600



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 119/533 (22%), Positives = 198/533 (37%), Gaps = 79/533 (14%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L  G+   +K     V R+  +G    +      D  V  + + S   I     PD   Y
Sbjct: 426 LARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI----DPDIVTY 481

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           +A++N    +G+ K   ++  +++  G  P+ + Y+ +I  C R       + + E ++ 
Sbjct: 482 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 541

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G T    TF  LV +    G +  AE  ++ M                           
Sbjct: 542 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS------------------------- 576

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                  + +LPN+++                  +  L+ GY N G   + ++       
Sbjct: 577 -------DGILPNTVS------------------FDCLINGYGNSG---EGLKAFSVFDE 608

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                 HP   TY +++  L K G +  A + L  +  +    + + YN LL   C+   
Sbjct: 609 MTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGN 668

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISY 360
           + KA  L  EM   + I PD  +Y  LI G      +  A+ F  E  ARG + P K+ Y
Sbjct: 669 LAKAVSLFGEMVQRS-ILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMY 727

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T  +     + Q K A   F E + +     DIV  N +++GY RMG +E+   ++  M 
Sbjct: 728 TCFVDGMFKAGQWK-AGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMG 786

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI--------KERCEVKKEGVNADSDLP 472
                PN+ TY  L +G S  +    + LL++ I        K  C     G+   + L 
Sbjct: 787 NQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLE 846

Query: 473 PPLK-----------PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
             LK            D    + L   C        A ++V  M   GI  +K
Sbjct: 847 IGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDK 899



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 38/335 (11%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +AP    Y T++  Y  +GR    + +L  M+ +  +A   D  TY  ++  L ++  + 
Sbjct: 264 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDA---DVCTYNMLIHDLCRSNRIA 320

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +   +L +M +  +  N +TYN L+ G+  + ++  A +LL EM     + P+ V++N L
Sbjct: 321 KGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG-LSPNHVTFNAL 379

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG I   +   AL  F  M A+G+ P+++SY  L+     +++  LA   +  M R+  
Sbjct: 380 IDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG- 438

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V V  + +  +++G C+ G ++EA  ++  M ++G  P++ TY +L NG     K G   
Sbjct: 439 VCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC---KVGR-- 493

Query: 449 LLWKEIKE-RCEVKKEGVNADSDLPPPL-------------------------KPDEELL 482
             +K  KE  C + + G++ +  +   L                           D    
Sbjct: 494 --FKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTF 551

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           + L     +A    +A E + CM   GI PN   +
Sbjct: 552 NVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 586



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 147/342 (42%), Gaps = 58/342 (16%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L +   P+   +  L+     EG    +  +   M++ E +   P  VTY TV+    K
Sbjct: 224 MLKRKICPDVATFNILINVLCAEGSFEKSSYL---MQKMEKSGYAPTIVTYNTVLHWYCK 280

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G    A ++L  M   GV A+  TYN+L+   C+  +I K   LLR+M     I P+ V
Sbjct: 281 KGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM-IHPNEV 339

Query: 324 SYNILIDGF-----------------------------ILIDD--SAG----ALTFFNEM 348
           +YN LI+GF                              LID   S G    AL  F  M
Sbjct: 340 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 399

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
            A+G+ P+++SY  L+     +++  LA   +  M R+  V V  + +  +++G C+ G 
Sbjct: 400 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG-VCVGRITYTGMIDGLCKNGF 458

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGVNA 467
           ++EA  ++  M ++G  P++ TY +L NG     K G     +K  KE  C + + G   
Sbjct: 459 LDEAVVLLNEMSKDGIDPDIVTYSALINGFC---KVGR----FKTAKEIVCRIYRVG--- 508

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
                  L P+  +   L   C R    ++A+ I   M   G
Sbjct: 509 -------LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 543



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 109/500 (21%), Positives = 183/500 (36%), Gaps = 92/500 (18%)

Query: 57   DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
            DT  YN +L A    G   K + LF +M +    PD  TY  +I  LC +      ++F 
Sbjct: 652  DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 711

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             E      +      +   V      G  +      + M         +     ++ YS 
Sbjct: 712  KEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSR 771

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              + +  +D      LLP   N +           PN   Y  L+ GY     VS +  +
Sbjct: 772  MGKIEKTND------LLPEMGNQNG---------GPNLTTYNILLHGYSKRKDVSTSFLL 816

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                R    N   PD +T  ++V  + ++  ++   ++L      GV  +R T+N+L+  
Sbjct: 817  Y---RSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISK 873

Query: 296  YCQQLQIDKAKELLREMAD----------DA------------------------KIEPD 321
             C   +I+ A +L++ M            DA                         I P+
Sbjct: 874  CCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPE 933

Query: 322  VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
               Y  LI+G   + D   A     EM A  I P  ++ + +++A A   +   A  +  
Sbjct: 934  SRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLR 993

Query: 382  EMLR----------------------------------DPRVKVDIVAWNMLVEGYCRMG 407
             ML+                                  +  +K+D+V++N+L+ G C  G
Sbjct: 994  FMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKG 1053

Query: 408  LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG--EALLLWKEIKERCEVKKEGV 465
             +  A  + E MK +GF  N  TY +L  G+ LAR+     A ++ K++  R  +    +
Sbjct: 1054 DMALAFELYEEMKGDGFLANATTYKALIRGL-LARETAFSGADIILKDLLARGFITSMSL 1112

Query: 466  NADSDLPPPLKPDEELLDAL 485
            + DS     LK   E L AL
Sbjct: 1113 SQDSH--RNLKMAMEKLKAL 1130



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++L+  Y R G+++++  I   M   GF P+V T  ++   +    K GE + +W  +
Sbjct: 165 VYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVV---KSGEDVSVWSFL 221

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           KE              L   + PD    + L ++      F K+  ++  ME+ G  P  
Sbjct: 222 KEM-------------LKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 268

Query: 515 TKYKKI 520
             Y  +
Sbjct: 269 VTYNTV 274


>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1152

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 198/467 (42%), Gaps = 73/467 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P     N VL    +     K   +++ M E G  P V+T+N M+  C +A         
Sbjct: 238 PSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGD------- 290

Query: 116 LERI----LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
           LER+    LEM    I     T+  L+  +   G +E A      MR     V       
Sbjct: 291 LERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNP 350

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP------------------PLLPKTFA 210
            +E Y    +G  DD   V +++L   I P++                     LL    A
Sbjct: 351 LIEGYC--KQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAA 408

Query: 211 PNSRIYTTLMKGYMNEGR-----------------------------VSDTVRMLGAMRR 241
           P+   Y TLM GY+  G+                             + ++  + GA R 
Sbjct: 409 PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRL 468

Query: 242 QEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           +E+  +    PD +TYTT+V   VK G++  A +V  EM R G+  +   Y     G  +
Sbjct: 469 KEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELR 528

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
               DKA  L  EM       PD+  YN+ IDG   + +   A+ F  ++   G+ P  +
Sbjct: 529 LGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHV 588

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +YTT+++ +  + Q K+A  ++DEMLR  R+   ++ + +L+ G+ + G +E+A +    
Sbjct: 589 TYTTVIRGYLENGQFKMARNLYDEMLR-KRLYPSVITYFVLIYGHAKAGRLEQAFQYSTE 647

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
           MK+ G  PNV T+ +L  G+  A    EA       +  C++++EG+
Sbjct: 648 MKKRGVRPNVMTHNALLYGMCKAGNIDEAY------RYLCKMEEEGI 688


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 216/482 (44%), Gaps = 59/482 (12%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V  +ST++  L    +D   E++ LF  +                KP+   +  +
Sbjct: 143 GFHPTVVTFSTLLHGLCV--EDRISEALDLFHQM---------------CKPNVVTFTTL 185

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFV--LERILE 121
           +N     G+  + + L D+M E G +P+ +TY  ++  +C        L  +  +E +  
Sbjct: 186 MNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSH 245

Query: 122 MGITLCMTTFQ---SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +   + +   +    ++  +   G    A+ ++Q M E R+ +   +   +    +   E
Sbjct: 246 IKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLE-RKKISPDVVTYNALINAFVKE 304

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   + +E+++++LP  I PS+               Y++++ G+  + R+     M   
Sbjct: 305 GKFFEAEELYDEMLPRGIIPSTIT-------------YSSMIDGFCKQNRLDAAEHMFYL 351

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      PD +T+ T+++   +A  +D   ++L EMT  G+ AN ITY  L+ G+CQ
Sbjct: 352 MATK---GCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 408

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA-------- 350
              ++ A++LL+EM     + P+VV+ N L+DG         AL  F  M+         
Sbjct: 409 VGDLNAAQDLLQEMVSSG-VCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDAS 467

Query: 351 ---RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
               G+ P   +Y  L+       +   A ++++EM     V  D + +N ++ G C+  
Sbjct: 468 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP-DTITYNSVIHGLCKQS 526

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            ++EA ++ + M    F PNV T+ +L NG   A +  + L L+      CE+ + G+ A
Sbjct: 527 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF------CEMGRRGIVA 580

Query: 468 DS 469
           ++
Sbjct: 581 NA 582



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 165/374 (44%), Gaps = 28/374 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YNA++NA    GK  +  +L+D+M   G  P  +TY+ MI    + +R      +
Sbjct: 289 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHM 348

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G +  + TF +L+A Y     ++    ++  M E       I     +  +  
Sbjct: 349 FYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFC- 407

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              GD +   ++ ++++ + +              PN     TL+ G  + G++ D + M
Sbjct: 408 -QVGDLNAAQDLLQEMVSSGV-------------CPNVVTCNTLLDGLCDNGKLKDALEM 453

Query: 236 LGAMRRQ--EDNASHP------DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
             AM++   + +ASHP      D  TY  ++S L+  G    A ++  EM   G+  + I
Sbjct: 454 FKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 513

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYN ++ G C+Q ++D+A ++   M   +   P+VV++  LI+G+         L  F E
Sbjct: 514 TYNSVIHGLCKQSRLDEATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCE 572

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  RGI    I+Y TL+  F        A  +F EM+        I   NML   + +  
Sbjct: 573 MGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSK-- 630

Query: 408 LVEEAKRIIERMKE 421
             EE KR +  +++
Sbjct: 631 --EELKRAVAMLED 642



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 134/308 (43%), Gaps = 30/308 (9%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L  G+     + D + + G M R       P  + +  ++  +V+ G +D    +  +M 
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSR---PLPSVIDFCKLMGVVVRMGRLDVVISLHRKME 105

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
              VP N  ++ IL+K +C   ++  A     ++       P VV+++ L+ G  + D  
Sbjct: 106 MRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKIT-KLGFHPTVVTFSTLLHGLCVEDRI 164

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
           + AL  F++M      P  +++TTLM       +   A  + D ML D  ++ + + +  
Sbjct: 165 SEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDG-LQPNQITYGT 219

Query: 399 LVEGYCRMGLVEEAKRIIERMKE-NGFYPNVATY-----GSLANGISLARKPGEALLLWK 452
           +V+G C+MG    A  ++ +M+E +   PNV  +       + NG   + +  EA  L +
Sbjct: 220 IVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQ 279

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E+ ER   KK            + PD    +AL +  V+   F +A E+   M   GI P
Sbjct: 280 EMLER---KK------------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 324

Query: 513 NKTKYKKI 520
           +   Y  +
Sbjct: 325 STITYSSM 332


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 185/448 (41%), Gaps = 77/448 (17%)

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
           R F++  I  D   D  ++  V+  C   G+ +K   L  ++ EFG  P+V+ Y  +I  
Sbjct: 150 RFFNESKIKVD--LDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDG 207

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
           C +         +   + + G+     T+  L+      G                    
Sbjct: 208 CCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG-------------------- 247

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
             I++   E Y    E      D VF                      PN   Y  +M  
Sbjct: 248 --IKKQGFEMYEKMQE------DGVF----------------------PNLYTYNCVMNQ 277

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           +  +GR  D  ++   MR +       + VTY T++  L +    + A +V+ +M   G+
Sbjct: 278 HCKDGRTKDAFKLFDEMRER---GVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGI 334

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N ITYN L+ G+C   ++ KA  L R++     + P +V+YNIL+ GF    D++GA 
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG-LSPSLVTYNILVSGFCKKGDTSGAG 393

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV----DIVAWNM 398
               EM  RGI P+KI+YT L+  FA     ++ N      LR P  ++    D+  +++
Sbjct: 394 KVVKEMEERGIKPSKITYTILIDTFA-----RMDNMEKAIQLRSPMEELGLTPDVHTYSV 448

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           L+ G+C  G + EA R+ + M      PN   Y ++  G         AL L++E++E+ 
Sbjct: 449 LIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEK- 507

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALA 486
                      +LPP +     +++ L 
Sbjct: 508 -----------ELPPNVASYRYMIEVLC 524



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 151/311 (48%), Gaps = 23/311 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              N   YT L+ G    G       M   M  QED    P+  TY  V++   K G   
Sbjct: 229 LVANEWTYTVLIHGLFKNGIKKQGFEMYEKM--QEDGV-FPNLYTYNCVMNQHCKDGRTK 285

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A ++  EM   GV  N +TYN L+ G C++++ ++A +++ +M  D  I P++++YN L
Sbjct: 286 DAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDG-INPNLITYNTL 344

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDGF  +     AL+   ++++RG++P+ ++Y  L+  F        A KV  EM  +  
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEM-EERG 403

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +K   + + +L++ + RM  +E+A ++   M+E G  P+V TY  L +G  +  +  EA 
Sbjct: 404 IKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA-DICVRAAFFRKALEIVACMEE 507
            L+K +                +   L+P++ + + +    C   + +R AL +   MEE
Sbjct: 464 RLFKLM----------------VAKKLEPNKVIYNTMVLGYCKEGSSYR-ALRLFREMEE 506

Query: 508 HGIPPNKTKYK 518
             +PPN   Y+
Sbjct: 507 KELPPNVASYR 517



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 23/335 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P S  +  L+   +     +   R     + + D     D  ++  V+    +
Sbjct: 120 MVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVD----LDVYSFGIVIKGCCE 175

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG ++++  +L E+   G   N + Y  L+ G C++ +I+KAK+L  EM     +  +  
Sbjct: 176 AGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEW- 234

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y +LI G             + +M+  G+ P   +Y  +M       + K A K+FDEM
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEM 294

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R+  V  +IV +N L+ G CR     EA +++++MK +G  PN+ TY +L +G     K
Sbjct: 295 -RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGK 353

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
            G+AL L +++K R             L P L     L+        +      A ++V 
Sbjct: 354 LGKALSLCRDLKSR------------GLSPSLVTYNILVSGFC----KKGDTSGAGKVVK 397

Query: 504 CMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
            MEE GI P+K  Y  I ++  +RM   + A Q R
Sbjct: 398 EMEERGIKPSKITY-TILIDTFARMDNMEKAIQLR 431



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 192/416 (46%), Gaps = 34/416 (8%)

Query: 27  GPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
           G +E  K FD++V+ +R+F          P+   Y  +++ C   G+ +K   LF +M +
Sbjct: 177 GEIE--KSFDLLVE-LREFG-------FSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGK 226

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           FG   +  TY V+I    +   K     + E++ E G+   + T+  ++  +   G  + 
Sbjct: 227 FGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKD 286

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
           A  +   MRE R   C I+    L       E   ++ ++V +++  + INP        
Sbjct: 287 AFKLFDEMRE-RGVSCNIVTYNTLIGGLCR-EMKANEANKVMDQMKSDGINP-------- 336

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
                N   Y TL+ G+   G++    + L   R  +     P  VTY  +VS   K G 
Sbjct: 337 -----NLITYNTLIDGFCGVGKLG---KALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
              A +V+ EM   G+  ++ITY IL+  + +   ++KA +L R   ++  + PDV +Y+
Sbjct: 389 TSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQL-RSPMEELGLTPDVHTYS 447

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +LI GF +      A   F  M A+ + P K+ Y T++  +        A ++F EM  +
Sbjct: 448 VLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREM-EE 506

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
             +  ++ ++  ++E  C+    +EA+ ++E+M + G  P+     S+ N IS A+
Sbjct: 507 KELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPS----DSILNLISRAK 558



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 20/247 (8%)

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           Q Q   +  LL  + +    E     Y ++I+ ++       ++++FNEM  +G  P   
Sbjct: 71  QSQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSN 130

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            +  L+     SS      + F+E     +V +D+ ++ ++++G C  G +E++  ++  
Sbjct: 131 CFNNLLTFVVGSSSFNQWWRFFNE--SKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVE 188

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           ++E GF PNV  Y +L +G     K GE   + K      E+ K G+ A          +
Sbjct: 189 LREFGFSPNVVIYTTLIDGCC---KRGE---IEKAKDLFFEMGKFGLVA----------N 232

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
           E     L     +    ++  E+   M+E G+ PN   Y  + +  H +   +K A +  
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCV-MNQHCKDGRTKDAFKLF 291

Query: 539 QDRRRER 545
            D  RER
Sbjct: 292 -DEMRER 297



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 34/202 (16%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDA-------------------------------- 316
           Y +++  Y Q   +D +     EM D                                  
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 317 -KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
            K++ DV S+ I+I G     +   +     E+R  G +P  + YTTL+       + + 
Sbjct: 157 IKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEK 216

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A  +F EM +   V  +   + +L+ G  + G+ ++   + E+M+E+G +PN+ TY  + 
Sbjct: 217 AKDLFFEMGKFGLVANEW-TYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVM 275

Query: 436 NGISLARKPGEALLLWKEIKER 457
           N      +  +A  L+ E++ER
Sbjct: 276 NQHCKDGRTKDAFKLFDEMRER 297


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 149/315 (47%), Gaps = 20/315 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  LM   +  GRV D V +    R  +D    PD  ++  V+  + + G + +A +++ 
Sbjct: 49  YNKLMSSLIGRGRVHDVVALFE--RWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVE 106

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   + +T+NIL+ G C+  ++ +  E+LR +  D    P+VV++  +I G+   
Sbjct: 107 RMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 166

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+  +N+M A GI P  ++Y  L+  +        A +V+ +M R  R   D+V 
Sbjct: 167 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVT 225

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++GYCR G +++A RI   M ++   PNV T+  + + +    +  EA+ L  E+ 
Sbjct: 226 FSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNEL- 284

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                         +L P + P   + + + D+  +     +A  I   MEE G  P+K 
Sbjct: 285 --------------NLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKY 330

Query: 516 KYKKIYVE--MHSRM 528
            Y  + +   M SR+
Sbjct: 331 TYTILIIGYCMKSRI 345



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 3/247 (1%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           +P++  +  L+ G      VS    +L   R Q D    P+ VT+T+V+S   KAG ++ 
Sbjct: 114 SPDTVTHNILVDGLCRTNEVSRGHEVL--RRLQRDGVCMPNVVTFTSVISGYCKAGKLED 171

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  V  +M   G+  N +TYN+L+ GY +   +  A E+ ++M    +  PDVV+++ LI
Sbjct: 172 AMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVTFSSLI 230

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DG+        AL  +++M    I P   +++ ++ +    ++   A  + +E+   P +
Sbjct: 231 DGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDI 290

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
                 +N +++  C+ G V+EA  I + M+E G  P+  TY  L  G  +  +  EA++
Sbjct: 291 APQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIM 350

Query: 450 LWKEIKE 456
            + E+ E
Sbjct: 351 FFHEMVE 357



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 182/433 (42%), Gaps = 28/433 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD    + ++++C           L  +  EFG + +   YN ++       R H +V 
Sbjct: 8   SPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVA 67

Query: 115 VLERILEMGI-TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           + ER ++  + +  + +F  ++      G ++ A  +V+ M E       +   + ++  
Sbjct: 68  LFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGL 127

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              NE       EV  +L  + +              PN   +T+++ GY   G++ D +
Sbjct: 128 CRTNE--VSRGHEVLRRLQRDGV------------CMPNVVTFTSVISGYCKAGKLEDAM 173

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M     +   P+ VTY  +++   K G +  A +V  +MTR+  P + +T++ L+
Sbjct: 174 AVYNDMVA---SGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLI 230

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR-G 352
            GYC+  Q+D A  +  +MA   +I+P+V +++I+I      + S  A+   NE+  R  
Sbjct: 231 DGYCRCGQLDDALRIWSDMAQH-RIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPD 289

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           IAP    Y  ++       +   AN +   M  +   + D   + +L+ GYC    + EA
Sbjct: 290 IAPQAFIYNPVIDVLCKCGKVDEANLIRKGM-EEKGCRPDKYTYTILIIGYCMKSRISEA 348

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
                 M E G  P+  T     + +  A  P        E+     +   G ++  ++P
Sbjct: 349 IMFFHEMVEAGCSPDSITVNCFISCLLKAGMP-------NEVDHVMRLASGGASSIQEVP 401

Query: 473 PPLKPDEELLDAL 485
            P++   ++  AL
Sbjct: 402 SPVRQRLDISVAL 414



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 18/273 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD    + +VS+   A  +D +  +L++ +  G       YN L+     + ++     L
Sbjct: 9   PDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVAL 68

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
                 D    PDV S+N++I G   +     AL     M   G +P  +++  L+    
Sbjct: 69  FERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLC 128

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +++    ++V   + RD     ++V +  ++ GYC+ G +E+A  +   M  +G  PN 
Sbjct: 129 RTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNT 188

Query: 429 ATYGSLANGISLARKPGEALLLWKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
            TY  L NG       G A+ +++++ + RC             PP +     L+D    
Sbjct: 189 VTYNVLINGYGKVGDLGSAVEVYQQMTRLRC-------------PPDVVTFSSLIDGYC- 234

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R      AL I + M +H I PN   +  I
Sbjct: 235 ---RCGQLDDALRIWSDMAQHRIQPNVYTFSII 264


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 193/402 (48%), Gaps = 41/402 (10%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFG-AKPDVLTYNVMIK-LCARASRKHLLVFVLERILE 121
           V++     G+ +K  +L D+M   G  KP+V TYN ++     R  RK +     + IL+
Sbjct: 222 VIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGV-----DEILK 276

Query: 122 M----GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-- 175
           +     +   + T+  L+  Y   GD+E AE I + MRE  +++     E+D+  YSS  
Sbjct: 277 LMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMRE--KNI-----EMDVYVYSSMI 329

Query: 176 ---ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                 G+      +F+++    I              PN+  Y  L+ G    G++   
Sbjct: 330 SWSRRLGNMKRAFALFDEMSQRDI-------------VPNAHTYGALIGGVCKAGQMEAA 376

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L  M   +      + V + T +    + G MD A ++ A M + G+ A+  TYNIL
Sbjct: 377 EILLLEM---QSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNIL 433

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
             G C+  + D+AK +L  M +   ++P+VV++ + I+ +    + A A   F +M  +G
Sbjct: 434 ANGLCKLHRYDEAKCILNSMVEKG-VKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKG 492

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  I+Y TL+ A+    + K A+K+  EM+    +  D+  ++ L+ G C +G V+EA
Sbjct: 493 EVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLP-DLYTYSSLIHGECIVGRVDEA 551

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            ++   M+  G   NVATY S+ +G+S   +  EA  L+ E+
Sbjct: 552 LKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEM 593



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+  TY T+++A V         ++L  M +  V  +  TY+IL++ Y     I++A+++
Sbjct: 250 PNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKI 309

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             EM +   IE DV  Y+ +I     + +   A   F+EM  R I P   +Y  L+    
Sbjct: 310 FEEMRE-KNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVC 368

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + Q + A  +  EM +   V +++V +N  ++GYCR G ++EA R+   M++ G   +V
Sbjct: 369 KAGQMEAAEILLLEM-QSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADV 427

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY  LANG+    +  EA  +   + E+      GV          KP+        +I
Sbjct: 428 FTYNILANGLCKLHRYDEAKCILNSMVEK------GV----------KPNVVTFTMFIEI 471

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +A  +   ME+ G  PN   Y  +
Sbjct: 472 YCKEGNLAEAERLFRDMEKKGEVPNIITYNTL 503



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 22/261 (8%)

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRI-TYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           AL + G +D   +    M        R+ +  +++   C++ +++KAKEL+ EM     +
Sbjct: 189 ALKRCGEVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIV 248

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +P+V +YN L++ ++   D  G       M    +  +  +Y+ L++ ++ S   + A K
Sbjct: 249 KPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEK 308

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+EM R+  +++D+  ++ ++    R+G ++ A  + + M +    PN  TYG+L  G+
Sbjct: 309 IFEEM-REKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGV 367

Query: 439 SLARK--PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
             A +    E LLL        E++ +GV  D +L         + +   D   R     
Sbjct: 368 CKAGQMEAAEILLL--------EMQSKGV--DLNLV--------IFNTTMDGYCRRGKMD 409

Query: 497 KALEIVACMEEHGIPPNKTKY 517
           +AL + A ME+ GI  +   Y
Sbjct: 410 EALRLQAIMEKKGINADVFTY 430


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 190/404 (47%), Gaps = 25/404 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K +T ++N +++      +  + +++  +M ++G  PD +TYN ++    +  R +    
Sbjct: 194 KINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARD 253

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVC 162
           +L  +   G+    TTF  LV      G L+ A  +++ M +                 C
Sbjct: 254 LLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFC 313

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI--NPSSEP------PLLPKTFAPNSR 214
           K  R  +      E E      D V    L N    + SSE        +  +   PNS 
Sbjct: 314 KQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSV 373

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y  ++K ++ +G++ +  +    +R+ E++   PD VTY T++S   K G MD A +++
Sbjct: 374 TYNVMVKWFVKKGKMDEVDK---TVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLM 430

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM R G+  + +T N +L+  C++ ++D+A +LL   A       D VSY  LI G+  
Sbjct: 431 DEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCS-ARRRGYFVDEVSYGTLIIGYFK 489

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            + ++ AL  ++EM+ + I P+ I+Y +++       +   A    DE+L    V  D +
Sbjct: 490 HEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVP-DEI 548

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            +N ++ GYC+ G VE+A +   +M E  F P+V T  +L  G+
Sbjct: 549 TYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGL 592



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 137/316 (43%), Gaps = 75/316 (23%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N+  +  L+ G   E R  + +R+LG MR   D    PD++TY T++  L K G ++ AR
Sbjct: 196 NTNSFNILIHGSCMENRFGEAIRVLGKMR---DYGCPPDNITYNTILDGLCKKGRLNEAR 252

Query: 272 QVLAEMTRIGVPANRITYNIL-----------------------------------LKGY 296
            +L +M   G+  NR T+NIL                                   + G+
Sbjct: 253 DLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGF 312

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+Q +I +A  L  EM ++ K+ PDVV+YN LI+G      S        EM  RG+ P 
Sbjct: 313 CKQGRIAEAMRLREEM-ENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPN 371

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y  ++K F    +    +K   +M  +     DIV +N L+  +C++G ++EA R++
Sbjct: 372 SVTYNVMVKWFVKKGKMDEVDKTVRKM-EESGCLPDIVTYNTLISWHCKVGKMDEAFRLM 430

Query: 417 ERM-----------------------------------KENGFYPNVATYGSLANGISLA 441
           + M                                   +  G++ +  +YG+L  G    
Sbjct: 431 DEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKH 490

Query: 442 RKPGEALLLWKEIKER 457
            K  +AL LW E+KE+
Sbjct: 491 EKASQALRLWDEMKEK 506



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 196/445 (44%), Gaps = 32/445 (7%)

Query: 28  PVESVKLFDVVVKRVRKFSDP-DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
           PV+       ++   +K ++P   +  SKP          AC   G+P +  Q+F++M  
Sbjct: 96  PVDKSSSLHYLLLHPQKTNNPVSCLHISKPLLDISIGAYVAC---GRPHQAAQIFNRMKR 152

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVF---VLERILEMGITLCMTTFQSLVAAYVGFGD 143
            G +P +LT N ++    R    H +     V    +++G+ +   +F  L+        
Sbjct: 153 LGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMENR 212

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---NEGDDDDDDEVFEKLLPNSIN--- 197
              A  ++  MR+       I     L+    +   NE  D   D   + L PN      
Sbjct: 213 FGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNI 272

Query: 198 -------------PSSEPPLLPK-TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                         ++   L+ + +  P++  Y  ++ G+  +GR+++ +R+   M   E
Sbjct: 273 LVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEM---E 329

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           +    PD VTY T+++   + GS +   +++ EM   G+  N +TYN+++K + ++ ++D
Sbjct: 330 NLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMD 389

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +  + +R+M +   + PD+V+YN LI     +     A    +EM  +G+    ++  T+
Sbjct: 390 EVDKTVRKMEESGCL-PDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTM 448

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           ++A     +   A+ +     R     VD V++  L+ GY +     +A R+ + MKE  
Sbjct: 449 LRALCRERKLDEAHDLLCSARRRGYF-VDEVSYGTLIIGYFKHEKASQALRLWDEMKEKE 507

Query: 424 FYPNVATYGSLANGISLARKPGEAL 448
             P++ TY S+  G+    K  +A+
Sbjct: 508 IIPSIITYNSMIAGLCQMGKTNQAI 532



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 25/310 (8%)

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK---AGSMDRARQVLAEMT 278
            Y+  GR     ++   M+R       P  +T  T+++ALV+   + S+  ++ V  +  
Sbjct: 133 AYVACGRPHQAAQIFNRMKRL---GMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFI 189

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           +IGV  N  ++NIL+ G C + +  +A  +L +M D     PD ++YN ++DG       
Sbjct: 190 KIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYG-CPPDNITYNTILDGLCKKGRL 248

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A     +M+ +G+ P + ++  L+         K A  V  E++    V  D   +N+
Sbjct: 249 NEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVI-ELMSQNSVVPDAWTYNV 307

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           ++ G+C+ G + EA R+ E M+     P+V TY +L NG        E   L +E++ R 
Sbjct: 308 MISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGR- 366

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                           +KP+    + +    V+     +  + V  MEE G  P+   Y 
Sbjct: 367 ---------------GMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYN 411

Query: 519 KIYVEMHSRM 528
            + +  H ++
Sbjct: 412 TL-ISWHCKV 420



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 151/352 (42%), Gaps = 59/352 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++N C   G  ++  +L ++M   G KP+ +TYNVM+K   +  +   +   
Sbjct: 335 PDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKT 394

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR--DVC------KIIR 166
           + ++ E G    + T+ +L++ +   G ++ A  ++  M R+G +  DV        + R
Sbjct: 395 VRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCR 454

Query: 167 ELDLED-----YSSENEGDDDDD-----------------------DEVFEK-LLPNSIN 197
           E  L++      S+   G   D+                       DE+ EK ++P+ I 
Sbjct: 455 ERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIIT 514

Query: 198 PSSE-----------------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +S                    LL     P+   Y T++ GY  EG+V    +    M 
Sbjct: 515 YNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMV 574

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD VT  T++  L K G +++A ++       G   + ++YN ++   C++ 
Sbjct: 575 EKN---FKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEK 631

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +A +LL EM ++ K+ PD  +YN ++ G         A  F +++  +G
Sbjct: 632 RFGEAFDLLEEM-EEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKG 682



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 20/195 (10%)

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA---FALSSQPKLANKVFDE 382
           +I I  ++       A   FN M+  G+ PT ++  TL+ A   F  S   +L+  VF +
Sbjct: 128 DISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTD 187

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            ++   VK++  ++N+L+ G C      EA R++ +M++ G  P+  TY ++ +G+    
Sbjct: 188 FIK-IGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKG 246

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
           +  EA  L  ++K +                 L P+    + L   C R  + ++A  ++
Sbjct: 247 RLNEARDLLLDMKNK----------------GLFPNRTTFNILVVGCCRLGWLKEAANVI 290

Query: 503 ACMEEHGIPPNKTKY 517
             M ++ + P+   Y
Sbjct: 291 ELMSQNSVVPDAWTY 305



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 123/316 (38%), Gaps = 49/316 (15%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
            D V K VRK  +    S   PD   YN +++    +GK  +  +L D+M   G K D +
Sbjct: 388 MDEVDKTVRKMEE----SGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDV 443

Query: 95  TYNVMIKLCARASRKHLLVFVLERIL-EMGITLCMTTFQSLVAAYVGFGDLEIA----ET 149
           T N M++   R           ER L E    LC    +      V +G L I     E 
Sbjct: 444 TLNTMLRALCR-----------ERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEK 492

Query: 150 IVQAMR-----EGRRDVCKIIRE----LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS 200
             QA+R     + +  +  II        L      N+  D  D+ +   L+P+ I  ++
Sbjct: 493 ASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNT 552

Query: 201 -----------------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                               ++ K F P+     TL+ G   EG +   +++      + 
Sbjct: 553 IIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKG 612

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
            +    D V+Y T++ +L K      A  +L EM    +  +  TYN +L G     ++ 
Sbjct: 613 KDV---DAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMK 669

Query: 304 KAKELLREMADDAKIE 319
            A+E + ++A+  K E
Sbjct: 670 DAEEFISKIAEKGKSE 685



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 13/156 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L SG +P    ++T++      G              V++  +F +  +  + KPD   
Sbjct: 538 LLESGLVPDEITYNTIIHGYCQEGQ-------------VEKAFQFHNKMVEKNFKPDVVT 584

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N +L      G  +K L+LF+     G   D ++YN +I    +  R      +LE + 
Sbjct: 585 CNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEME 644

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           E  +     T+ +++      G ++ AE  +  + E
Sbjct: 645 EKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAE 680


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 188/398 (47%), Gaps = 26/398 (6%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFV--LER 118
           ++V+      G+    L L + M + G  PD+ T++++I +LC     +    F+  + R
Sbjct: 53  HSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNR 112

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
            +    + C + + SL+ +      +  A  I   M   R  V       D+  YS   +
Sbjct: 113 TISTRASSCFS-YNSLLNSLCKAKKVHQAFAIFSTMVSERSVV------PDVVSYSILID 165

Query: 179 GDDDDDD-EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           G    D+    EKL    I+ +           PN   Y   + G M +GR++D     G
Sbjct: 166 GFCKIDELGRAEKLYKQMIDLNC---------VPNVTTYNAFLNGLMRKGRIADA---QG 213

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
                      PD +TY+T++     A   D+A ++   M   G   N +TYN LL G C
Sbjct: 214 VYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLC 273

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           ++ + D+A EL R+M +    +PD V+Y  L+ GF  +     A+  F+EM ++G  P  
Sbjct: 274 KESKPDEAHELFRKMVERG-CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDV 332

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++Y  L+K F  + +P  A ++F  M+     K D V+ N++++G  +   +++A  + E
Sbjct: 333 VAYNCLLKGFFRAGKPGEARQLFQVMV-SRECKPDTVSHNIMIDGLSKAKRLDDAVEVFE 391

Query: 418 RMKE-NGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           RM++ +G  P++ TY SL  G+   ++  EA+ ++KEI
Sbjct: 392 RMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 429



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 138/317 (43%), Gaps = 27/317 (8%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           T A +   Y +L+       +V     +   M  +      PD V+Y+ ++    K   +
Sbjct: 116 TRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVV--PDVVSYSILIDGFCKIDEL 173

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
            RA ++  +M  +    N  TYN  L G  ++ +I  A+ +  EM   A   PDV++Y+ 
Sbjct: 174 GRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMIS-AGCSPDVITYST 232

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR-- 385
           LI GF L      A   F  M +RG  P  ++Y  L+      S+P  A+++F +M+   
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 386 -DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
            DP    D V +  L+ G+C +G +E+A  + + M   G  P+V  Y  L  G   A KP
Sbjct: 293 CDP----DKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKP 348

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
           GEA  L++ +  R                  KPD    + + D   +A     A+E+   
Sbjct: 349 GEARQLFQVMVSR----------------ECKPDTVSHNIMIDGLSKAKRLDDAVEVFER 392

Query: 505 MEE-HGIPPNKTKYKKI 520
           ME+ HG  P+   Y  +
Sbjct: 393 MEQDHGCSPDLVTYNSL 409



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPAN 285
           GRV   + +L  M ++      PD  T++ +++ L KA  +  A++ L  M R I   A+
Sbjct: 63  GRVDSALSLLETMIKR---GYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRAS 119

Query: 286 R-ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
              +YN LL   C+  ++ +A  +   M  +  + PDVVSY+ILIDGF  ID+   A   
Sbjct: 120 SCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKL 179

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           + +M      P   +Y   +       +   A  V++EM+       D++ ++ L+ G+ 
Sbjct: 180 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMI-SAGCSPDVITYSTLIHGFS 238

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
                ++A  + E M   G  PN  TY  L +G+    KP EA  L++++ ER
Sbjct: 239 LARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 291



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 133/313 (42%), Gaps = 23/313 (7%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N+  +T  + G    G++         M+    ++  P   T  +V+  L KAG +D A 
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE-PDVVSYNILID 330
            +L  M + G   +  T+++L+   C+  +I +A+E L+ M            SYN L++
Sbjct: 70  SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLN 129

Query: 331 GFILIDDSAGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
                     A   F+ M + R + P  +SY+ L+  F    +   A K++ +M+ D   
Sbjct: 130 SLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMI-DLNC 188

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             ++  +N  + G  R G + +A+ + E M   G  P+V TY +L +G SLARK  +A  
Sbjct: 189 VPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHE 248

Query: 450 LWKEIKER-CEVKKEGVNA-DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           L++ +  R C       N     L    KPDE               FRK       M E
Sbjct: 249 LFEAMISRGCRPNAVTYNCLLHGLCKESKPDEA-----------HELFRK-------MVE 290

Query: 508 HGIPPNKTKYKKI 520
            G  P+K  Y  +
Sbjct: 291 RGCDPDKVTYTTL 303



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 141/321 (43%), Gaps = 23/321 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y+ +++    + +  +  +L+ QM +    P+V TYN  +    R  R      V
Sbjct: 155 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 214

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDY 173
            E ++  G +  + T+ +L+  +      + A  + +AM  R  R +   +     L   
Sbjct: 215 YEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNA--VTYNCLLHGL 272

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E++   D+  E+F K++    +P             +   YTTL+ G+ N G++   V
Sbjct: 273 CKESK--PDEAHELFRKMVERGCDP-------------DKVTYTTLLYGFCNVGKIEQAV 317

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +  +   PD V Y  ++    +AG    ARQ+   M       + +++NI++
Sbjct: 318 EVFDEMVSKGHD---PDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMI 374

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G  +  ++D A E+   M  D    PD+V+YN LI G       + A+  F E+    +
Sbjct: 375 DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKL 434

Query: 354 APTKISYTTLMKA-FALSSQP 373
           +P   ++  L++A +A   +P
Sbjct: 435 SPDPHAFNVLLEAMYAAGHKP 455



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 121/283 (42%), Gaps = 55/283 (19%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           I +   PD   Y+ +++  +   K  +  +LF+ M   G +P+ +TYN ++    + S+ 
Sbjct: 219 ISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKP 278

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +  +++E G      T+ +L+  +   G +E      QA+               
Sbjct: 279 DEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIE------QAV--------------- 317

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                           EVF++             ++ K   P+   Y  L+KG+   G+ 
Sbjct: 318 ----------------EVFDE-------------MVSKGHDPDVVAYNCLLKGFFRAGKP 348

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRIT 288
            +  ++   M  +E     PD V++  ++  L KA  +D A +V   M +  G   + +T
Sbjct: 349 GEARQLFQVMVSRE---CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVT 405

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           YN L+ G C + ++ +A ++ +E+ D  K+ PD  ++N+L++ 
Sbjct: 406 YNSLIFGLCGEQRLSEAMKVFKEI-DRLKLSPDPHAFNVLLEA 447



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 94/212 (44%), Gaps = 41/212 (19%)

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMAD--------------------------DA 316
           P N + +   L G C+  +I++A E  R M +                          D+
Sbjct: 8   PLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDS 67

Query: 317 KIE-----------PDVVSYNILIDGFILIDDSAGALTFFNEMRARGI---APTKISYTT 362
            +            PD+ ++++LI+     D    A  F   M  R I   A +  SY +
Sbjct: 68  ALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMN-RTISTRASSCFSYNS 126

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+ +   + +   A  +F  M+ +  V  D+V++++L++G+C++  +  A+++ ++M + 
Sbjct: 127 LLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 186

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEI 454
              PNV TY +  NG+    +  +A  +++E+
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEM 218


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 201/491 (40%), Gaps = 92/491 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L+A   + K    + L  +M   G + D+ T+N++I       +  L + V
Sbjct: 83  PSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSV 142

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCK 163
           L ++L++G      T  SLV  +     +  A ++V  M E G R            +CK
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCK 202

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
             R  D  D+  E                           +  K   PN   YT L+ G 
Sbjct: 203 TRRVNDALDFFKE---------------------------IGRKGIRPNVVTYTALVNGL 235

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
            N GR +D  R+L  M +++     P+ +TY+ ++ A VK G +  A+++  EM R+ + 
Sbjct: 236 CNSGRWNDAARLLRDMIKRK---ITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSID 292

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            + +TY+ L+ G C   +ID+A ++   M       PDVVSYN LI+GF         + 
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCF-PDVVSYNTLINGFCKAKRVEDGMK 351

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-------------------- 383
            F +M  RG+    ++Y TL++ F        A + F +M                    
Sbjct: 352 LFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLC 411

Query: 384 --------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                         ++   + +DIV +  +++G C+ G VE+A  +   +   G  P++ 
Sbjct: 412 DNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIV 471

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY ++ +G+       E   L+ ++K+      EG+         +K D  L     DI 
Sbjct: 472 TYTTMMSGLCTKGLQHEVEALYTKMKQ------EGL---------MKNDSMLCLGDGDIT 516

Query: 490 VRAAFFRKALE 500
           + A   +K L 
Sbjct: 517 ISAELIKKMLS 527



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 178/375 (47%), Gaps = 24/375 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD     +++N      +    + L D+M E G +PD++ YN +I    +  R +  + 
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALD 211

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             + I   GI   + T+ +LV      G    A  +++ M + R+    +I    L D  
Sbjct: 212 FFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIK-RKITPNVITYSALLDAF 270

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N G   +  E+FE+++  SI+P             +   Y++L+ G     R+ +  +
Sbjct: 271 VKN-GKVLEAKEIFEEMVRMSIDP-------------DIVTYSSLINGLCLHDRIDEANQ 316

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M   M  +      PD V+Y T+++   KA  ++   ++  +M++ G+  N +TYN L++
Sbjct: 317 MFDLMVSK---GCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQ 373

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA--GALTFFNEMRARG 352
           G+ Q   +DKA+E   +M D   + PD+ +YNIL+ G  L D+     AL  F +M+   
Sbjct: 374 GFFQVGDVDKAQEFFSQM-DSFGVSPDIWTYNILLGG--LCDNGLLEKALVIFEDMQKSE 430

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +    ++YTT+++    + + + A  +F   L    +K DIV +  ++ G C  GL  E 
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCS-LSLKGLKPDIVTYTTMMSGLCTKGLQHEV 489

Query: 413 KRIIERMKENGFYPN 427
           + +  +MK+ G   N
Sbjct: 490 EALYTKMKQEGLMKN 504


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 198/444 (44%), Gaps = 36/444 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V   + ++  +  SG+D  V S  L +++ +++             PD A +N +
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSF-LKEMLKRKI------------CPDVATFNIL 199

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G  +K   L  +M + G  P ++TYN ++    +  R    + +L+ +   G+
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + T+  L+        +     +++ MR+      ++I   ++  Y++   G  ++ 
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK------RMIHPNEVT-YNTLINGFSNEG 312

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             +    L N         +L    +PN   +  L+ G+++EG   + ++M   M   E 
Sbjct: 313 KVLIASQLLN--------EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM---EA 361

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P  V+Y  ++  L K    D AR     M R GV   RITY  ++ G C+   +D+
Sbjct: 362 KGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDE 421

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  LL EM+ D  I+PD+V+Y+ LI+GF  +     A      +   G++P  I Y+TL+
Sbjct: 422 AVVLLNEMSKDG-IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                    K A ++++ M+ +   + D   +N+LV   C+ G V EA+  +  M  +G 
Sbjct: 481 YNCCRMGCLKEAIRIYEAMILEGHTR-DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539

Query: 425 YPNVATYGSLANGISLARKPGEAL 448
            PN  ++  L NG       GE L
Sbjct: 540 LPNTVSFDCLINGYG---NSGEGL 560



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 119/533 (22%), Positives = 198/533 (37%), Gaps = 79/533 (14%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L  G+   +K     V R+  +G    +      D  V  + + S   I     PD   Y
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI----DPDIVTY 441

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           +A++N    +G+ K   ++  +++  G  P+ + Y+ +I  C R       + + E ++ 
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G T    TF  LV +    G +  AE  ++ M                           
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS------------------------- 536

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                  + +LPN+++                  +  L+ GY N G   + ++       
Sbjct: 537 -------DGILPNTVS------------------FDCLINGYGNSG---EGLKAFSVFDE 568

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                 HP   TY +++  L K G +  A + L  +  +    + + YN LL   C+   
Sbjct: 569 MTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGN 628

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISY 360
           + KA  L  EM   + I PD  +Y  LI G      +  A+ F  E  ARG + P K+ Y
Sbjct: 629 LAKAVSLFGEMVQRS-ILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMY 687

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T  +     + Q K A   F E + +     DIV  N +++GY RMG +E+   ++  M 
Sbjct: 688 TCFVDGMFKAGQWK-AGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMG 746

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI--------KERCEVKKEGVNADSDLP 472
                PN+ TY  L +G S  +    + LL++ I        K  C     G+   + L 
Sbjct: 747 NQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLE 806

Query: 473 PPLK-----------PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
             LK            D    + L   C        A ++V  M   GI  +K
Sbjct: 807 IGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDK 859



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 38/335 (11%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +AP    Y T++  Y  +GR    + +L  M+ +  +A   D  TY  ++  L ++  + 
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDA---DVCTYNMLIHDLCRSNRIA 280

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +   +L +M +  +  N +TYN L+ G+  + ++  A +LL EM     + P+ V++N L
Sbjct: 281 KGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG-LSPNHVTFNAL 339

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDG I   +   AL  F  M A+G+ P+++SY  L+     +++  LA   +  M R+  
Sbjct: 340 IDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG- 398

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V V  + +  +++G C+ G ++EA  ++  M ++G  P++ TY +L NG     K G   
Sbjct: 399 VCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC---KVGR-- 453

Query: 449 LLWKEIKE-RCEVKKEGVNADSDLPPPL-------------------------KPDEELL 482
             +K  KE  C + + G++ +  +   L                           D    
Sbjct: 454 --FKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTF 511

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           + L     +A    +A E + CM   GI PN   +
Sbjct: 512 NVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 546



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 147/342 (42%), Gaps = 58/342 (16%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L +   P+   +  L+     EG    +  +   M++ E +   P  VTY TV+    K
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYL---MQKMEKSGYAPTIVTYNTVLHWYCK 240

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G    A ++L  M   GV A+  TYN+L+   C+  +I K   LLR+M     I P+ V
Sbjct: 241 KGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM-IHPNEV 299

Query: 324 SYNILIDGF-----------------------------ILIDD--SAG----ALTFFNEM 348
           +YN LI+GF                              LID   S G    AL  F  M
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
            A+G+ P+++SY  L+     +++  LA   +  M R+  V V  + +  +++G C+ G 
Sbjct: 360 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG-VCVGRITYTGMIDGLCKNGF 418

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGVNA 467
           ++EA  ++  M ++G  P++ TY +L NG     K G     +K  KE  C + + G   
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFC---KVGR----FKTAKEIVCRIYRVG--- 468

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
                  L P+  +   L   C R    ++A+ I   M   G
Sbjct: 469 -------LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 116/556 (20%), Positives = 199/556 (35%), Gaps = 105/556 (18%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M + G+ P    + +++  L   G              ++   KF        +  DT  
Sbjct: 569  MTKVGHHPTFFTYGSLLKGLCKGGH-------------LREAEKFLKSLHAVPAAVDTVM 615

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
            YN +L A    G   K + LF +M +    PD  TY  +I  LC +      ++F  E  
Sbjct: 616  YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675

Query: 120  LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
                +      +   V      G  +      + M         +     ++ YS   + 
Sbjct: 676  ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735

Query: 180  DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
            +  +D      LLP   N +           PN   Y  L+ GY     VS +  +    
Sbjct: 736  EKTND------LLPEMGNQNG---------GPNLTTYNILLHGYSKRKDVSTSFLLY--- 777

Query: 240  RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R    N   PD +T  ++V  + ++  ++   ++L      GV  +R T+N+L+   C  
Sbjct: 778  RSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCAN 837

Query: 300  LQIDKAKELLREMAD----------DA------------------------KIEPDVVSY 325
             +I+ A +L++ M            DA                         I P+   Y
Sbjct: 838  GEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897

Query: 326  NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
              LI+G   + D   A     EM A  I P  ++ + +++A A   +   A  +   ML+
Sbjct: 898  IGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLK 957

Query: 386  ----------------------------------DPRVKVDIVAWNMLVEGYCRMGLVEE 411
                                              +  +K+D+V++N+L+ G C  G +  
Sbjct: 958  MKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAL 1017

Query: 412  AKRIIERMKENGFYPNVATYGSLANGISLARKPG--EALLLWKEIKERCEVKKEGVNADS 469
            A  + E MK +GF  N  TY +L  G+ LAR+     A ++ K++  R  +    ++ DS
Sbjct: 1018 AFELYEEMKGDGFLANATTYKALIRGL-LARETAFSGADIILKDLLARGFITSMSLSQDS 1076

Query: 470  DLPPPLKPDEELLDAL 485
                 LK   E L AL
Sbjct: 1077 H--RNLKMAMEKLKAL 1090



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++L+  Y R G+++++  I   M   GF P+V T  ++   +    K GE + +W  +
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVV---KSGEDVSVWSFL 181

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           KE              L   + PD    + L ++      F K+  ++  ME+ G  P  
Sbjct: 182 KEM-------------LKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 228

Query: 515 TKYKKI 520
             Y  +
Sbjct: 229 VTYNTV 234


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 173/399 (43%), Gaps = 55/399 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +  +L + A +      L L  QM  FG  PDV T N++I       R      V
Sbjct: 110 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 169

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++L++G     TTF +L+                       R +C             
Sbjct: 170 LAKLLKLGCQPDNTTFNTLI-----------------------RGLCV------------ 194

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K              + + F P+   Y TLM G    G  S  +R+
Sbjct: 195 --EGKIGEALHLFDK-------------TIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRL 239

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L +M ++      P+ + Y T++ +L K   +  A  + +EM   G+  +  TYN L+  
Sbjct: 240 LRSMVQKN---CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHA 296

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL EM  ++KI P+VV ++ ++D        A A    + M  RG+ P
Sbjct: 297 LCNLCEWKHVTTLLNEMV-NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEP 355

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YT LM    L S+   A KVFD M+    V  ++ ++N+L+ GYC++  +++A  +
Sbjct: 356 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP-NVRSYNILINGYCQIQRMDKAMGL 414

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +E+M   G   +  TY +L +G+    +   A+ L+ E+
Sbjct: 415 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEM 453



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 180/428 (42%), Gaps = 76/428 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G  P    ++T++  L   G  G  E++ LFD   K + +   PD+V+        
Sbjct: 173 LLKLGCQPDNTTFNTLIRGLCVEGKIG--EALHLFD---KTIGEGFQPDVVT-------- 219

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +P+V+ YN +I    +  +      +   ++
Sbjct: 220 YGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMI 279

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ SL+ A     + +   T++  M                          
Sbjct: 280 TKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM-------------------------- 313

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS---DTVRMLG 237
                 V  K++PN +                  +++T++     EG ++   D V M+ 
Sbjct: 314 ------VNSKIMPNVV------------------VFSTVVDALCKEGMIAIAHDVVDMM- 348

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            ++R  +    PD VTYT ++        MD A +V   M   G   N  +YNIL+ GYC
Sbjct: 349 -IKRGVE----PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYC 403

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           Q  ++DKA  LL +M+    I  D V+YN LI G   +     A+  F+EM A G  P  
Sbjct: 404 QIQRMDKAMGLLEQMSLQGLI-ADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 462

Query: 358 ISYTTLMKAFALSSQPKLANK-VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           ++Y  L+    L     LA   V  + +    +  DI+ +N+ ++G CR G +E A+ + 
Sbjct: 463 VTYRILLD--YLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLF 520

Query: 417 ERMKENGF 424
             +   GF
Sbjct: 521 SNLSCQGF 528


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 199/425 (46%), Gaps = 24/425 (5%)

Query: 41  RVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
            V+   +  + +   P+   ++ ++      G  ++  ++  QM E G  PDV  Y  +I
Sbjct: 235 HVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATII 294

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
               +  R  +   +L R+   G++  +  + +L+         E AE ++  M +    
Sbjct: 295 DGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCP 354

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
           +  +   + L D+  +N G  D   EV E++L +                P+   YTT++
Sbjct: 355 LDDVTFNI-LVDFLCQN-GLVDRVIEVLEQMLEHGC-------------MPDVITYTTVI 399

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G+  EG + + V +L   R        P+ V+YT V+  L  A     A +++++M + 
Sbjct: 400 NGFCKEGLIDEAVMLL---RSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQ 456

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G P N +T+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG     ++  
Sbjct: 457 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLGKAGNTDE 515

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD--EMLRDPRVKVDIVAWNM 398
           AL   N M  +G++P  I Y+++  A ALS + ++ NKV    E ++D  V+ D V +N 
Sbjct: 516 ALELLNVMVKKGMSPNTIIYSSI--ASALSGEGRI-NKVIQMFENIQDTTVRSDAVLYNA 572

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           ++   C+ G  + A   +  M  +G  PN +TY  L  G++      EA  +  E+  + 
Sbjct: 573 VISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632

Query: 459 EVKKE 463
            ++K 
Sbjct: 633 ALRKH 637



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 214/479 (44%), Gaps = 41/479 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLF-DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           D    N VL A  + G   + ++L  D +  FG +PDV++YN +++    A R   +  +
Sbjct: 180 DVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDL 239

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +E ++  G    + TF +L+      G  E + E   Q    G           D+  Y+
Sbjct: 240 MEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAP--------DVRMYA 291

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +  +G   ++     + + N + PS          +PN   Y TL+KG  +  R  +   
Sbjct: 292 TIIDGVCKEERLEVARGILNRM-PS-------YGLSPNVVCYNTLLKGLCSADRWEEAEG 343

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M    D     D VT+  +V  L + G +DR  +VL +M   G   + ITY  ++ 
Sbjct: 344 LLAEMF---DKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVIN 400

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C++  ID+A  LLR MA      P+ VSY I++ G    +    A    ++M  +G  
Sbjct: 401 GFCKEGLIDEAVMLLRSMA-ACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCP 459

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  +++ TL+         + A ++  +ML +     D+++++ +++G  + G  +EA  
Sbjct: 460 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVN-GCSPDLISYSTVIDGLGKAGNTDEALE 518

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M + G  PN   Y S+A+ +S   +  + + +++ I++                  
Sbjct: 519 LLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDT----------------T 562

Query: 475 LKPDEELLDA-LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
           ++ D  L +A ++ +C R    R A+E +A M   G  PN++ Y  +   + S  F  +
Sbjct: 563 VRSDAVLYNAVISSLCKRGETDR-AIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKE 620



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 137/314 (43%), Gaps = 26/314 (8%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN+  Y  L++     GR++D + +L  M R+      P    Y   + A  +A     
Sbjct: 108 APNAYTYFPLVRALCARGRIADALAVLDDMARR---GCAPTPPMYHVTLEAACRASGFRG 164

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  VL ++   G   +    N++L+  C Q  +D+A  LLR++      EPDVVSYN ++
Sbjct: 165 AVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVL 224

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G  +            EM A G  P  ++++TL+     +   +  ++V  +M  +   
Sbjct: 225 RGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQM-AEHGC 283

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D+  +  +++G C+   +E A+ I+ RM   G  PNV  Y +L  G+  A +      
Sbjct: 284 APDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADR------ 337

Query: 450 LWKEIKERCEVKKEGVNA---DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
            W+E         EG+ A   D D P     D+   + L D   +     + +E++  M 
Sbjct: 338 -WEE--------AEGLLAEMFDKDCP----LDDVTFNILVDFLCQNGLVDRVIEVLEQML 384

Query: 507 EHGIPPNKTKYKKI 520
           EHG  P+   Y  +
Sbjct: 385 EHGCMPDVITYTTV 398



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 24/291 (8%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V RV +  +  +     PD   Y  V+N     G   + + L   M   G +P+ ++Y 
Sbjct: 372 LVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYT 431

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMRE 156
           +++K    A R      ++ ++++ G      TF +L+      G +E A E + Q +  
Sbjct: 432 IVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVN 491

Query: 157 GRRDVCKIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
           G           DL  YS+  +  G   + DE  E L            ++ K  +PN+ 
Sbjct: 492 GCSP--------DLISYSTVIDGLGKAGNTDEALELL----------NVMVKKGMSPNTI 533

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           IY+++      EGR++  ++M       +D     D V Y  V+S+L K G  DRA + L
Sbjct: 534 IYSSIASALSGEGRINKVIQMF---ENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFL 590

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           A M   G   N  TY IL++G   +  + +A+E+L E+     +   ++ +
Sbjct: 591 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGALRKHLMKH 641



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 22/233 (9%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN ++ GYC+  Q+  A+ L   +     + P+  +Y  L+         A AL   ++M
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASV----PVAPNAYTYFPLVRALCARGRIADALAVLDDM 137

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             RG APT   Y   ++A   +S  + A  V  + L      +D+   N++++  C  G 
Sbjct: 138 ARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRD-LHGRGCALDVGNCNLVLQAVCDQGP 196

Query: 409 VEEAKRII-ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
           V+EA R++ + +   G  P+V +Y ++  G+ +AR+       W  ++   ++ +E V A
Sbjct: 197 VDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARR-------WGHVQ---DLMEEMVAA 246

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               PP +     L+  L     R   F +  E+ A M EHG  P+   Y  I
Sbjct: 247 GC--PPNIVTFSTLIGHLC----RNGLFERVHEVHAQMAEHGCAPDVRMYATI 293


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 20/315 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  LM   +  GRV D V +    R  +D    PD  ++  V+  + + G + +A +++ 
Sbjct: 221 YNKLMSSLIGRGRVHDVVALFE--RWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVE 278

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   + +T+NI++ G C+  ++ +  E+LR +  D    P+VV++  +I G+   
Sbjct: 279 RMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 338

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+  +N+M A GI P  ++Y  L+  +        A +V+ +M R  R   D+V 
Sbjct: 339 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVT 397

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++GYCR G +++A RI   M ++   PNV T+  + + +    +  EA+ L  E+ 
Sbjct: 398 FSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELN 457

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            R               P + P   + + + D+  +     +A  I   MEE G  P+K 
Sbjct: 458 LR---------------PDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKY 502

Query: 516 KYKKIYVE--MHSRM 528
            Y  + +   M SR+
Sbjct: 503 TYTILIIGYCMKSRI 517



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 178/415 (42%), Gaps = 44/415 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           P   +   ++      G+    LQLFDQM   +G  PD    + ++  C  A+       
Sbjct: 145 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASAT 204

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------RDV 161
           +L +  E G  +    +  L+++ +G G +     + +   + R             + V
Sbjct: 205 LLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGV 264

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           C++              G      E+ E++  N    S           P++  +  ++ 
Sbjct: 265 CRV--------------GQVQKALELVERM--NEFGCS-----------PDTVTHNIIVD 297

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G      VS    +L   R Q D    P+ VT+T+V+S   KAG ++ A  V  +M   G
Sbjct: 298 GLCRTNEVSRGHEVL--RRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 355

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           +  N +TYN+L+ GY +   +  A E+ ++M    +  PDVV+++ LIDG+        A
Sbjct: 356 IMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVTFSSLIDGYCRCGQLDDA 414

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L  +++M    I P   +++ ++ +    ++   A  + +E+   P +      +N +++
Sbjct: 415 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVID 474

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             C+ G V+EA  I + M+E G  P+  TY  L  G  +  +  EA++ + E+ E
Sbjct: 475 VLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVE 529



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 177/424 (41%), Gaps = 28/424 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD    + ++++C           L  +  EFG + +   YN ++       R H +V 
Sbjct: 180 SPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVA 239

Query: 115 VLERILEMGI-TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           + ER ++  + +  + +F  ++      G ++ A  +V+ M E       +   + ++  
Sbjct: 240 LFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGL 299

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              NE       EV  +L  + +              PN   +T+++ GY   G++ D +
Sbjct: 300 CRTNE--VSRGHEVLRRLQRDGV------------CMPNVVTFTSVISGYCKAGKLEDAM 345

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M     +   P+ VTY  +++   K G +  A +V  +MTR+  P + +T++ L+
Sbjct: 346 AVYNDM---VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLI 402

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR-G 352
            GYC+  Q+D A  +  +MA   +I+P+V +++I+I      + S  A+   NE+  R  
Sbjct: 403 DGYCRCGQLDDALRIWSDMAQH-RIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPD 461

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           IAP    Y  ++       +   AN +   M  +   + D   + +L+ GYC    + EA
Sbjct: 462 IAPQAFIYNPVIDVLCKCGKVDEANLIRKGM-EEKGCRPDKYTYTILIIGYCMKSRISEA 520

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
                 M E G  P+  T     + +  A  P        E+     +   G ++  + P
Sbjct: 521 IMFFHEMVEAGCSPDSITVNCFISCLLKAGMP-------NEVDHVMRLASGGASSIQEFP 573

Query: 473 PPLK 476
            P++
Sbjct: 574 SPVR 577



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 128/316 (40%), Gaps = 20/316 (6%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P +  P++     ++      GR +D +++   M      +  PD    + +VS+   A 
Sbjct: 140 PLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYS--PDARFLSFLVSSCTCAN 197

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D +  +L++ +  G       YN L+     + ++     L      D    PDV S+
Sbjct: 198 LLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSF 257

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N++I G   +     AL     M   G +P  +++  ++     +++    ++V   + R
Sbjct: 258 NVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQR 317

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D     ++V +  ++ GYC+ G +E+A  +   M  +G  PN  TY  L NG       G
Sbjct: 318 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 377

Query: 446 EALLLWKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            A+ +++++ + RC                  PD     +L D   R      AL I + 
Sbjct: 378 SAVEVYQQMTRLRC-----------------PPDVVTFSSLIDGYCRCGQLDDALRIWSD 420

Query: 505 MEEHGIPPNKTKYKKI 520
           M +H I PN   +  I
Sbjct: 421 MAQHRIQPNVYTFSII 436


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 216/504 (42%), Gaps = 56/504 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L A   +G     + LF Q+H  G  P + T  ++I      +       +
Sbjct: 53  PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSL 112

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  IL+MG    M TF +L+  +       I   + +AM   R D+      LD   Y S
Sbjct: 113 LGTILKMGFQPNMVTFNTLINGFC------INGMVSKAM-AFRLDLMAKGYPLDEFSYGS 165

Query: 176 E-----NEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPK--TFAPNSRI-------- 215
                   G   D  ++ +K+      PN I  S+    L K    A   R+        
Sbjct: 166 LINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRG 225

Query: 216 -------YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
                  Y +L+ G  + G+  +  R+L  M R   N   PD  T+  +V AL K G + 
Sbjct: 226 ILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNIN---PDDYTFNILVDALCKEGRIV 282

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+ V A M + G   + +TYN L++G+C    + +A+EL   M     +EPDV++YN+L
Sbjct: 283 EAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRG-LEPDVLNYNVL 341

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G+  ID    A+  F E+R + + P   +Y +L+       +     ++ DEM  D  
Sbjct: 342 INGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMC-DRG 400

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              DIV +N+ ++ +C+    E+A  +  ++ + G +P+   Y  +          GE L
Sbjct: 401 QSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFC----KGEKL 455

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            + +E  +   +            P ++    +++AL   C     F +A+ +++ M+++
Sbjct: 456 KIAEEALQHLLIH--------GCCPNVRTYTIMINALCKDCS----FDEAMTLLSKMDDN 503

Query: 509 GIPPNKTKYKKIYVEMHSRMFTSK 532
             PP+   ++ I   +  R  T K
Sbjct: 504 DCPPDAVTFETIIGALQERNETDK 527



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 167/391 (42%), Gaps = 44/391 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP-DTA 59
           +L+ G+ P++  ++T+++    +G      + +L              D+++   P D  
Sbjct: 116 ILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRL--------------DLMAKGYPLDEF 161

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA-RASRKHLLVFVLE 117
           +Y +++N     G+ +  LQL  +M E   +P+++TY+ +I  LC  R     L +F L 
Sbjct: 162 SYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSL- 220

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKII 165
            +   GI + +  + SL+      G    A  ++  M  G  +            +CK  
Sbjct: 221 -VTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEG 279

Query: 166 RELDLED-YSSENEGDDDDDDEVFEKL-----LPNSINPSSE--PPLLPKTFAPNSRIYT 217
           R ++ +  ++   +  +  D   +  L     L N+++ + E    ++ +   P+   Y 
Sbjct: 280 RIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYN 339

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ GY     V + + +   +R +      P+  TY +++  L K G M   ++++ EM
Sbjct: 340 VLINGYCKIDMVDEAMVLFKEIRCKN---LVPNLATYNSLIDGLCKLGRMSCVQELVDEM 396

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              G   + +TYNI L  +C+    +KA  L R++     I PD   Y+++++ F   + 
Sbjct: 397 CDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQG--IWPDFYMYDVIVENFCKGEK 454

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
              A      +   G  P   +YT ++ A  
Sbjct: 455 LKIAEEALQHLLIHGCCPNVRTYTIMINALC 485



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 118/301 (39%), Gaps = 35/301 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R    P    ++ +V  L   G    VE+  +F V++KR             KPD   
Sbjct: 256 MVRGNINPDDYTFNILVDALCKEGR--IVEAQGVFAVMMKR-----------GEKPDIVT 302

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++          +  +LF++M + G +PDVL YNV+I    +       + + + I 
Sbjct: 303 YNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIR 362

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENE 178
              +   + T+ SL+      G +   + +V  M  R    D+      LD    S   E
Sbjct: 363 CKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYE 422

Query: 179 GDDDDDDEVFEKLLPN-----------------SINPSSEPPLLPKTFAPNSRIYTTLMK 221
                  ++ + + P+                  I   +   LL     PN R YT ++ 
Sbjct: 423 KAISLFRQIVQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMIN 482

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
               +    + + +L  M   +DN   PD VT+ T++ AL +    D+A ++  EM   G
Sbjct: 483 ALCKDCSFDEAMTLLSKM---DDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERG 539

Query: 282 V 282
           +
Sbjct: 540 L 540


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 127/240 (52%), Gaps = 5/240 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN   +  ++ GY  E +  D V  L  M +   N S PD+VTY T++ AL K G + 
Sbjct: 204 IVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKY--NCS-PDNVTYNTILDALCKKGRLG 260

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            AR +L +M   G+  NR TYNIL+ GYC+   + +A  ++  M  +  + PDV +YN+L
Sbjct: 261 DARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQN-NLLPDVWTYNML 319

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G         A    +EM    + P  +SY TL+      S+   A K+ +EM  +  
Sbjct: 320 INGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEM-SEKG 378

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           VK + V  N++V+ YC+ G +++A   I +M+E+GF P+  TY +L NG   A   GEA 
Sbjct: 379 VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAF 438



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/457 (22%), Positives = 185/457 (40%), Gaps = 71/457 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++N   N G+ ++  +L D+M      PDV++YN +I  C   S+      +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE + E G+     T   +V  Y   G ++ A   +  M E                   
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEES------------------ 412

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            F+P+   Y TL+ GY   G + +  R 
Sbjct: 413 --------------------------------GFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M R+       D VT  T++  L +   ++ A ++L+   + G   + ++Y  L+ G
Sbjct: 441 MDEMGRKN---MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVG 497

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +   +D+A +L  EM +  +I P  V+YN +I G      +  A++  NE+   G+ P
Sbjct: 498 YFKDGNVDRALKLWDEMKE-KEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLP 556

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            + +Y T++  +      + A +  ++M+ +   K D+   N+L+ G C  G++E+A ++
Sbjct: 557 DETTYNTILHGYCREGDVEKAFQFHNKMVENS-FKPDVFTCNILLRGLCMEGMLEKALKL 615

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
                  G   +  TY +L   +    +  +A  L  E++E+                 L
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK----------------EL 659

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
            PD    +A+      +   R+A E ++ M E G  P
Sbjct: 660 GPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%), Gaps = 24/314 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK---AGS 266
           +P+  +  T +  Y+  G+     ++   M+R       P+ +T  T++++LV+   + S
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLR---LRPNLLTCNTLLNSLVRYPSSHS 188

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  +R+   +  ++G+  N  T+NI++ GYC + +   A E L  M       PD V+YN
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMG-KYNCSPDNVTYN 247

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            ++D          A     +M++RG+ P + +Y  L+  +      K A  V  E++  
Sbjct: 248 TILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVI-ELMTQ 306

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  D+  +NML+ G C  G +EEA ++ + M+     P+V +Y +L NG     K  E
Sbjct: 307 NNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISE 366

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  L +E+ E+      GV          KP+    + +     +      A   +  ME
Sbjct: 367 AFKLLEEMSEK------GV----------KPNAVTHNIMVKWYCKEGKMDDASNTITKME 410

Query: 507 EHGIPPNKTKYKKI 520
           E G  P+   Y  +
Sbjct: 411 ESGFSPDCVTYNTL 424



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/411 (19%), Positives = 153/411 (37%), Gaps = 97/411 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDG--------------PVESVKLFDVV--VKRVRK 44
           M  SG+ P    ++T+++    +G+ G               ++SV L  ++  + R +K
Sbjct: 409 MEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKK 468

Query: 45  FSDP-DIVSDSKP-----DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             +   ++S ++      D  +Y  ++      G   + L+L+D+M E    P  +TYN 
Sbjct: 469 LEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNC 528

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I    +  +    +  L  +LE G+    TT+ +++  Y                    
Sbjct: 529 IIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGY-------------------- 568

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
              C+              EGD +   +   K++ NS             F P+      
Sbjct: 569 ---CR--------------EGDVEKAFQFHNKMVENS-------------FKPDVFTCNI 598

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L++G   EG +   +++      +       D VTY T++++L K G +D A  +L+EM 
Sbjct: 599 LLRGLCMEGMLEKALKLFNTWVSK---GKAIDTVTYNTLITSLCKEGRLDDAFNLLSEME 655

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV---------------- 322
              +  +  TYN ++       +I +A+E + +M +   +   V                
Sbjct: 656 EKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSE 715

Query: 323 ------VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
                 V+Y+  I           A+  F E + +GI   K +Y  LM   
Sbjct: 716 ESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 204/469 (43%), Gaps = 46/469 (9%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D   YN ++NA    G   +   L D M   G KP + TYN +I  LC   S +      
Sbjct: 258 DLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYER----- 312

Query: 116 LERILE--MGITLC--MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            +R+L+  +G+ LC    TF  ++       D+  AE +   M + R  V  +I    + 
Sbjct: 313 AKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQ-RGVVPDLISFSSIV 371

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
              S N G+       FEK+    +              P++ IYT L+ GY     VS 
Sbjct: 372 GVFSRN-GELGRALAYFEKMKGVGL-------------VPDTVIYTILINGYCRNDDVSG 417

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            ++M   M  +       D VTY T+++ L +   +D A ++  EM   GV  +  T   
Sbjct: 418 ALKMRNEMVER---GCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTT 474

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GYC+   + KA  L   M   + ++PDVV+YN L+DGF  + +   A   + +M +R
Sbjct: 475 LIHGYCKDGNMTKALSLFETMTLRS-LKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISR 533

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            I P+ IS++ L+  F        A +++DEM ++  +K  +V  N +++GY R G + +
Sbjct: 534 EIFPSYISFSILINGFCSLGLVSEAFRLWDEM-KEKGIKPTLVTCNTIIKGYLRAGNLSK 592

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A   +  M   G  P+  TY +L N          A  L   ++ER             L
Sbjct: 593 ANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEER------------GL 640

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            P L     +L   +    R    ++A  ++  M + GI P+K+ Y  +
Sbjct: 641 LPNLVTYNAILGGFS----RHGRMQEAEMVLHKMIDKGINPDKSTYTSL 685



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 197/436 (45%), Gaps = 51/436 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YNA++N     G  ++  ++ D+M   G  P+  T+N M+    R         
Sbjct: 291 KPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAER 350

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR------------------- 155
           V   +L+ G+   + +F S+V  +   G+L  A    + M+                   
Sbjct: 351 VFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYC 410

Query: 156 ---------EGRRDVCKIIRELDLEDYSSENEGDD-----DDDDEVFEKLLPNSINPSSE 201
                    + R ++ +    +D+  Y++   G       DD DE+F++++   +     
Sbjct: 411 RNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGV----- 465

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                    P+    TTL+ GY  +G ++  + +   M  +   +  PD VTY T++   
Sbjct: 466 --------FPDFYTLTTLIHGYCKDGNMTKALSLFETMTLR---SLKPDVVTYNTLMDGF 514

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
            K G M++A+++  +M    +  + I+++IL+ G+C    + +A  L  EM +   I+P 
Sbjct: 515 CKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKG-IKPT 573

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           +V+ N +I G++   + + A  F N M + G+ P  I+Y TL+ +F        A  + +
Sbjct: 574 LVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLIN 633

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
            M  +  +  ++V +N ++ G+ R G ++EA+ ++ +M + G  P+ +TY SL NG    
Sbjct: 634 NM-EERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSK 692

Query: 442 RKPGEALLLWKEIKER 457
               EA  +  E+ +R
Sbjct: 693 DNMKEAFRVHDEMLQR 708



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 164/372 (44%), Gaps = 20/372 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  ++++++   +  G+  + L  F++M   G  PD + Y ++I    R       + +
Sbjct: 362 PDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKM 421

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              ++E G  + + T+ +L+        L+ A+ + + M E  R V      L    +  
Sbjct: 422 RNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE--RGVFPDFYTLTTLIHGY 479

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G+      +FE +   S+ P             +   Y TLM G+   G +     +
Sbjct: 480 CKDGNMTKALSLFETMTLRSLKP-------------DVVTYNTLMDGFCKVGEMEKAKEL 526

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +E     P +++++ +++     G +  A ++  EM   G+    +T N ++KG
Sbjct: 527 WYDMISRE---IFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKG 583

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +   + KA + L  M  +  + PD ++YN LI+ F+  ++   A    N M  RG+ P
Sbjct: 584 YLRAGNLSKANDFLNTMISEG-VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLP 642

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y  ++  F+   + + A  V  +M+ D  +  D   +  L+ GY     ++EA R+
Sbjct: 643 NLVTYNAILGGFSRHGRMQEAEMVLHKMI-DKGINPDKSTYTSLINGYVSKDNMKEAFRV 701

Query: 416 IERMKENGFYPN 427
            + M + GF P+
Sbjct: 702 HDEMLQRGFVPD 713



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 147/334 (44%), Gaps = 35/334 (10%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           +   E+   + D VTY T+V+A  + G +  A  ++  M   G+     TYN L+ G C+
Sbjct: 247 LSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCK 306

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           +   ++AK +L EM     + P+  ++N ++      +D   A   FNEM  RG+ P  I
Sbjct: 307 EGSYERAKRVLDEML-GVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLI 365

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           S+++++  F+ + +   A   F++M +   +  D V + +L+ GYCR   V  A ++   
Sbjct: 366 SFSSIVGVFSRNGELGRALAYFEKM-KGVGLVPDTVIYTILINGYCRNDDVSGALKMRNE 424

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M E G   +V TY +L NG+   +   +A  L+KE+ ER      GV           PD
Sbjct: 425 MVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVER------GV----------FPD 468

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY----------------KKIYV 522
              L  L     +     KAL +   M    + P+   Y                K+++ 
Sbjct: 469 FYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWY 528

Query: 523 EMHSR-MFTSKHASQARQDRRRERKRAAEAFKFW 555
           +M SR +F S  +     +        +EAF+ W
Sbjct: 529 DMISREIFPSYISFSILINGFCSLGLVSEAFRLW 562



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 121/295 (41%), Gaps = 46/295 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P     +T++      G+    +++ LF+ +  R             KPD   
Sbjct: 460 MVERGVFPDFYTLTTLIHGYCKDGN--MTKALSLFETMTLR-----------SLKPDVVT 506

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK------LCARASRKHLLVF 114
           YN +++    +G+ +K  +L+  M      P  ++++++I       L + A R      
Sbjct: 507 YNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR------ 560

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDY 173
           + + + E GI   + T  +++  Y+  G+L  A   +  M  EG    C     L +  +
Sbjct: 561 LWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTL-INSF 619

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E    ++ D   F       IN   E  LL     PN   Y  ++ G+   GR+ +  
Sbjct: 620 VKE----ENFDRAFF------LINNMEERGLL-----PNLVTYNAILGGFSRHGRMQEAE 664

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG-VPANRI 287
            +L  M    D   +PD  TYT++++  V   +M  A +V  EM + G VP ++ 
Sbjct: 665 MVLHKMI---DKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDDKF 716



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 360 YTTLMKAFALSSQPKLAN-KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           YT  +   AL    KL N  V+   + +  V  D+V +N LV  YCR GLV EA  +++ 
Sbjct: 225 YTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDC 284

Query: 419 MKENGFYPNVATYGSLANGI 438
           M   G  P + TY +L NG+
Sbjct: 285 MAGKGLKPGLFTYNALINGL 304


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 172/399 (43%), Gaps = 55/399 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +  +L + A +      L L  QM  FG  PDV T N++I       R      V
Sbjct: 148 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 207

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++L++G     TTF +L+                       R +C             
Sbjct: 208 LAKLLKLGCQPDNTTFNTLI-----------------------RGLCV------------ 232

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K +                F P+   Y TLM G    G  S  +R+
Sbjct: 233 --EGKIGEALHLFDKTIGEG-------------FQPDVVTYGTLMNGLCKVGNTSAAIRL 277

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L +M ++      P+ + Y T++ +L K   +  A  + +EM   G+  +  TYN L+  
Sbjct: 278 LRSMVQKN---CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHA 334

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL EM  ++KI P+VV ++ ++D        A A    + M  RG+ P
Sbjct: 335 LCNLCEWKHVTTLLNEMV-NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEP 393

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YT LM    L S+   A KVFD M+    V  ++ ++N+L+ GYC++  +++A  +
Sbjct: 394 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP-NVRSYNILINGYCQIQRMDKAMGL 452

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +E+M   G   +  TY +L +G+    +   A+ L+ E+
Sbjct: 453 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEM 491



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 191/460 (41%), Gaps = 76/460 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G  P    ++T++  L   G  G  E++ LFD             I    +PD   
Sbjct: 211 LLKLGCQPDNTTFNTLIRGLCVEGKIG--EALHLFD-----------KTIGEGFQPDVVT 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +P+V+ YN +I    +  +      +   ++
Sbjct: 258 YGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMI 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ SL+ A     + +   T++  M                          
Sbjct: 318 TKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM-------------------------- 351

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS---DTVRMLG 237
                 V  K++PN +                  +++T++     EG ++   D V M+ 
Sbjct: 352 ------VNSKIMPNVV------------------VFSTVVDALCKEGMIAIAHDVVDMM- 386

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            ++R       PD VTYT ++        MD A +V   M   G   N  +YNIL+ GYC
Sbjct: 387 -IKR----GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYC 441

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           Q  ++DKA  LL +M+    I  D V+YN LI G   +     A+  F+EM A G  P  
Sbjct: 442 QIQRMDKAMGLLEQMSLQGLI-ADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 500

Query: 358 ISYTTLMKAFALSSQPKLANK-VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           ++Y  L+    L     LA   V  + +    +  DI+ +N+ ++G CR G +E A+ + 
Sbjct: 501 VTYRILLD--YLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLF 558

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             +   G  P+V TY  + +G+       EA  L++++ E
Sbjct: 559 SNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDE 598


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 206/473 (43%), Gaps = 68/473 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIK-LCARASRKHLL 112
           +P TAA+ A++ A A+ G+  + ++ F +M  EFG +P    YN +++ L A      L 
Sbjct: 136 QPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASGGAVPLA 195

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           + +  R++  G      T+  L+                         +CK         
Sbjct: 196 LALYNRMVAAGCLPNRATYNVLI-----------------------HGLCK--------- 223

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                 G   D  ++F++++   I P             N + +T L+    N G++ + 
Sbjct: 224 -----RGTPVDALKLFDEMISRGITP-------------NVKTHTILLSSMCNAGQLKEA 265

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT-YNI 291
             +L +M   ED    PD VTY   +S L KAG +D A + L  +   G     +  Y+ 
Sbjct: 266 ENLLHSM---EDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSC 322

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G     + ++  +   E+ + A + PD+V Y I+I G      +  A  FF+EM+ +
Sbjct: 323 LIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEK 382

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G  P    Y TL+KA   +     A  +  EM+R+  V +DI  +  ++ G C+  LV+E
Sbjct: 383 GFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRN-NVVLDIHTYTTMIIGLCKEQLVDE 441

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A ++ + M E G +P+V TY  L +G+  A +  EA +L+ ++       + G N    L
Sbjct: 442 AMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKM-------EVGNNPSLFL 494

Query: 472 PPPLKP----DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              L      D E L  L +   ++    KA +++  + + G+ P+   Y  +
Sbjct: 495 RLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTL 547



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 208/469 (44%), Gaps = 55/469 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P    ++ V+  L ASG   P+ ++ L++ +V            +   P+ A YN +
Sbjct: 170 GCRPTTFVYNAVLRVLVASGGAVPL-ALALYNRMV-----------AAGCLPNRATYNVL 217

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G P   L+LFD+M   G  P+V T+ +++     A +      +L  + + G 
Sbjct: 218 IHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDKGC 277

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE-----G 179
                T+ + ++     G ++ A   ++A+R     V      L L+ YS   +     G
Sbjct: 278 PPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFV------LGLKGYSCLIDGLFLAG 331

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             ++  + + ++L  +              +P+  +YT +++G    GR +D       M
Sbjct: 332 RYEEGFQCYMEVLEQA------------DVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEM 379

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +   +    PD   Y T++ AL  AG +D AR +++EM R  V  +  TY  ++ G C++
Sbjct: 380 K---EKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKE 436

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +D+A ++   M  +    P V++YN+LIDG         A   F +M   G  P+   
Sbjct: 437 QLVDEAMQVFDGMV-EVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEV-GNNPSLFL 494

Query: 360 YTT--------------LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
             T              L+++   S Q   A K+   ++ D  V  D+V +N L+ G C+
Sbjct: 495 RLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGII-DSGVVPDVVTYNTLLNGLCK 553

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +  ++ A R+   ++  GF  +  TYG+L + +  A +  +AL L+++I
Sbjct: 554 VRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDI 602



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 132/565 (23%), Positives = 226/565 (40%), Gaps = 108/565 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G LP+   ++ ++  L   G   PV+++KLFD ++ R              P+   
Sbjct: 202 MVAAGCLPNRATYNVLIHGLCKRGT--PVDALKLFDEMISR-----------GITPNVKT 248

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  +L++  N G+ K+   L   M + G  PD +TYN  +    +A R    +  LE + 
Sbjct: 249 HTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALR 308

Query: 121 EMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
             G   L +  +  L+      G  E        + E + DV   I    +        G
Sbjct: 309 HTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLE-QADVSPDIVLYTIMIRGCAEAG 367

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +D    F+++               K F P++  Y TL+K   + G +     ++  M
Sbjct: 368 RTNDAFAFFDEMKE-------------KGFTPDTFCYNTLLKALCDAGDLDGARSLMSEM 414

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY--- 296
            R   N    D  TYTT++  L K   +D A QV   M  +G   + +TYN+L+ G    
Sbjct: 415 VR---NNVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRA 471

Query: 297 ---------------------------------------------CQQLQIDKAKELLRE 311
                                                        CQ  Q+ KA +LLR 
Sbjct: 472 HRLEEARMLFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRG 531

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           + D   + PDVV+YN L++G   + +  GAL  F E++ +G    +I+Y TL+ +   + 
Sbjct: 532 IIDSGVV-PDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAH 590

Query: 372 QPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
           +   A  +F ++L     P + +    +N ++   CRM  + +A         N ++ ++
Sbjct: 591 RYNDALTLFQDILHSGGTPSMPI----YNSMMRSLCRMQKLSQAI--------NLWFDHL 638

Query: 429 A-TYGSLANG--ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
              Y  LA    IS ARK  E   L + ++E  ++ +E  + +S       P    L  L
Sbjct: 639 PRKYNLLAQDEVISSARKKFEEGCLHEAVRELIKIDQEYGSVNS------CPYTIWLIGL 692

Query: 486 ADICVRAAFFRKALEIVACMEEHGI 510
               ++A     AL+I   +EE GI
Sbjct: 693 ----IQAGRIEDALKIFHILEESGI 713



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSS 371
           A  A ++P   ++  LI           A+  F+ M    G  PT   Y  +++    S 
Sbjct: 130 AQAAGLQPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASG 189

Query: 372 QP-KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
               LA  +++ M+    +  +   +N+L+ G C+ G   +A ++ + M   G  PNV T
Sbjct: 190 GAVPLALALYNRMVAAGCLP-NRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKT 248

Query: 431 YGSLANGISLARKPGEALLLWKEIKER 457
           +  L + +  A +  EA  L   ++++
Sbjct: 249 HTILLSSMCNAGQLKEAENLLHSMEDK 275


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 148/307 (48%), Gaps = 18/307 (5%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+   +  GR  D V +  +    +D    PD  ++  V+  + + G+  +A +++ 
Sbjct: 185 YNNLLNLLIARGRAQDAVALFESW--IQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVE 242

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            MT  G   + IT+NIL+ G C+  Q+++  +LLR +  D    P+VV+Y  +I G+   
Sbjct: 243 RMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKA 302

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                AL+ +N+M   G  P  ++Y  L+  +  +   + A +++ +++   R   D+V 
Sbjct: 303 GRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR-RCPPDVVT 361

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++GYCR G +++A RI + M ++   PNV T+  + + +    +  EAL   +E+ 
Sbjct: 362 FSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELN 421

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            R ++                P   + + + DI  +     +A  IV  MEE G  P+K 
Sbjct: 422 MRADIA---------------PQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKY 466

Query: 516 KYKKIYV 522
            Y  + +
Sbjct: 467 TYTILII 473



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 193/441 (43%), Gaps = 33/441 (7%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P  +++S V++ L  SG     +++KLFD +  +          S   PD   ++ V  +
Sbjct: 109 PSEQSYSHVITLLCRSGRHR--DALKLFDQMTDQ----------SGYLPDAVFFSFVAGS 156

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI-TL 126
           C N G     + L  +  +FG + +   YN ++ L     R    V + E  ++ G+ + 
Sbjct: 157 CTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSP 216

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
              +F  ++      G+ + A  +V+ M E       I   + ++      + +   D  
Sbjct: 217 DGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHD-- 274

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           +  +L  + +              PN   YT+++ GY   GR+ D + +   M    ++ 
Sbjct: 275 LLRRLQRDGV------------CMPNVVTYTSVISGYCKAGRMEDALSVYNDML---ESG 319

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
           + P+ VTY  +++   KA  M+ A ++  ++     P + +T++ L+ GYC+  Q+D A 
Sbjct: 320 TRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAM 379

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMK 365
            + +EM     I+P+V +++I+I      + SA AL F  E+  R  IAP    Y  ++ 
Sbjct: 380 RIWKEMGQH-HIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVID 438

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                 Q + AN +  +M  +     D   + +L+ G+C  G + EA  +  +M E G  
Sbjct: 439 ILCKGGQVEEANLIVTDM-EEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCR 497

Query: 426 PNVATYGSLANGISLARKPGE 446
           P+  T  S  + +  A  P E
Sbjct: 498 PDKITVNSFISCVLKAGMPNE 518



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 192/431 (44%), Gaps = 53/431 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           P   +Y+ V+      G+ +  L+LFDQM  + G  PD + ++ +   C  A      V 
Sbjct: 109 PSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVT 168

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA-MREGR------------RDV 161
           +L +  + G  +    + +L+   +  G  + A  + ++ +++G             + V
Sbjct: 169 LLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGV 228

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           C++              G+     E+ E++        +E    P T   N  +      
Sbjct: 229 CRV--------------GNFQKALELVERM--------TEFGCSPDTITHNILVDGLCRA 266

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
             +N G   D +R     R Q D    P+ VTYT+V+S   KAG M+ A  V  +M   G
Sbjct: 267 KQVNRGH--DLLR-----RLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESG 319

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              N +TYN+L+ GY + L ++ A  + R++    +  PDVV+++ LIDG+        A
Sbjct: 320 TRPNTVTYNVLINGYGKALDMESAVRMYRQLILR-RCPPDVVTFSSLIDGYCRCGQLDDA 378

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA----WN 397
           +  + EM    I P   +++ ++   +L  Q + A  +    LR+  ++ DI      +N
Sbjct: 379 MRIWKEMGQHHIQPNVYTFSIIIH--SLCKQNRSAEAL--GFLRELNMRADIAPQTFIYN 434

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +++  C+ G VEEA  I+  M+E G +P+  TY  L  G  +  +  EA+ L+ ++ E 
Sbjct: 435 PVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVET 494

Query: 458 -CEVKKEGVNA 467
            C   K  VN+
Sbjct: 495 GCRPDKITVNS 505



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 128/316 (40%), Gaps = 20/316 (6%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P +  P+ + Y+ ++      GR  D +++   M  Q  +   PD V ++ V  +   AG
Sbjct: 104 PLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQ--SGYLPDAVFFSFVAGSCTNAG 161

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D A  +L + ++ G       YN LL     + +   A  L      D    PD  S+
Sbjct: 162 LLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSF 221

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N++I G   + +   AL     M   G +P  I++  L+     + Q    + +   + R
Sbjct: 222 NVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQR 281

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D     ++V +  ++ GYC+ G +E+A  +   M E+G  PN  TY  L NG   A    
Sbjct: 282 DGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDME 341

Query: 446 EALLLWKE-IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            A+ ++++ I  RC                  PD     +L D   R      A+ I   
Sbjct: 342 SAVRMYRQLILRRC-----------------PPDVVTFSSLIDGYCRCGQLDDAMRIWKE 384

Query: 505 MEEHGIPPNKTKYKKI 520
           M +H I PN   +  I
Sbjct: 385 MGQHHIQPNVYTFSII 400



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 147/330 (44%), Gaps = 25/330 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD  ++N V+     +G  +K L+L ++M EFG  PD +T+N+++    RA + +    
Sbjct: 215 SPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHD 274

Query: 115 VLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           +L R+   G+  CM    T+ S+++ Y   G +E A ++   M E       +   + + 
Sbjct: 275 LLRRLQRDGV--CMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLIN 332

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y      D +    ++ +L+              +   P+   +++L+ GY   G++ D
Sbjct: 333 GYGKAL--DMESAVRMYRQLIL-------------RRCPPDVVTFSSLIDGYCRCGQLDD 377

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT-RIGVPANRITYN 290
            +R+   M +       P+  T++ ++ +L K      A   L E+  R  +      YN
Sbjct: 378 AMRIWKEMGQHH---IQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYN 434

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++   C+  Q+++A  ++ +M ++    PD  +Y ILI G  +      A+T F++M  
Sbjct: 435 PVIDILCKGGQVEEANLIVTDM-EEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVE 493

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            G  P KI+  + +     +  P   +++ 
Sbjct: 494 TGCRPDKITVNSFISCVLKAGMPNEVDQIM 523


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 20/315 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  LM   +  GRV D V +    R  +D    PD  ++  V+  + + G + +A +++ 
Sbjct: 218 YNKLMSSLIGRGRVHDVVALFE--RWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVE 275

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   + +T+NIL+ G C+  ++ +  E+LR +  D    P+VV++  +I G+   
Sbjct: 276 RMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 335

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+  +N+M A GI P  ++Y  L+  +        A +V+ +M R  R   D+V 
Sbjct: 336 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVT 394

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++GYCR G +++A RI   M ++   PNV T+  + + +    +  EA+ L  E+ 
Sbjct: 395 FSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELN 454

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            R               P + P   + + + D+  +     +A  I   MEE G  P+K 
Sbjct: 455 LR---------------PDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKY 499

Query: 516 KYKKIYVE--MHSRM 528
            Y  + +   M SR+
Sbjct: 500 TYTILIIGYCMKSRI 514



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 178/415 (42%), Gaps = 44/415 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           P   +   ++      G+    LQLFDQM   +G  PD    + ++  C  A+       
Sbjct: 142 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASAT 201

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------RDV 161
           +L +  E G  +    +  L+++ +G G +     + +   + R             + V
Sbjct: 202 LLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGV 261

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           C++              G      E+ E++  N    S           P++  +  L+ 
Sbjct: 262 CRV--------------GQVQKALELVERM--NEFGCS-----------PDTVTHNILVD 294

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G      VS    +L   R Q D    P+ VT+T+V+S   KAG ++ A  V  +M   G
Sbjct: 295 GLCRTNEVSRGHEVL--RRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 352

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           +  N +TYN+L+ GY +   +  A E+ ++M    +  PDVV+++ LIDG+        A
Sbjct: 353 IMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVTFSSLIDGYCRCGQLDDA 411

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L  +++M    I P   +++ ++ +    ++   A  + +E+   P +      +N +++
Sbjct: 412 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVID 471

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             C+ G V+EA  I + M+E G  P+  TY  L  G  +  +  EA++ + E+ E
Sbjct: 472 VLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVE 526



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 178/424 (41%), Gaps = 28/424 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD    + ++++C           L  +  EFG + +   YN ++       R H +V 
Sbjct: 177 SPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVA 236

Query: 115 VLERILEMGI-TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           + ER ++  + +  + +F  ++      G ++ A  +V+ M E       +   + ++  
Sbjct: 237 LFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGL 296

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              NE       EV  +L  + +              PN   +T+++ GY   G++ D +
Sbjct: 297 CRTNE--VSRGHEVLRRLQRDGV------------CMPNVVTFTSVISGYCKAGKLEDAM 342

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M     +   P+ VTY  +++   K G +  A +V  +MTR+  P + +T++ L+
Sbjct: 343 AVYNDM---VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLI 399

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR-G 352
            GYC+  Q+D A  +  +MA   +I+P+V +++I+I      + S  A+   NE+  R  
Sbjct: 400 DGYCRCGQLDDALRIWSDMAQH-RIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPD 458

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           IAP    Y  ++       +   AN +   M  +   + D   + +L+ GYC    + EA
Sbjct: 459 IAPQAFIYNPVIDVLCKCGKVDEANLIRKGM-EEKGCRPDKYTYTILIIGYCMKSRISEA 517

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
                 M E G  P+  T     + +  A  P        E+     +   G ++  ++P
Sbjct: 518 IMFFHEMVEAGCSPDSITVNCFISCLLKAGMP-------NEVDHVMRLASGGASSIQEVP 570

Query: 473 PPLK 476
            P++
Sbjct: 571 SPVR 574



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 20/316 (6%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P +  P++     ++      GR +D +++   M      +  PD    + +VS+   A 
Sbjct: 137 PLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYS--PDARFLSFLVSSCTCAN 194

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D +  +L++ +  G       YN L+     + ++     L      D    PDV S+
Sbjct: 195 LLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSF 254

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N++I G   +     AL     M   G +P  +++  L+     +++    ++V   + R
Sbjct: 255 NVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQR 314

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D     ++V +  ++ GYC+ G +E+A  +   M  +G  PN  TY  L NG       G
Sbjct: 315 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 374

Query: 446 EALLLWKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            A+ +++++ + RC                  PD     +L D   R      AL I + 
Sbjct: 375 SAVEVYQQMTRLRC-----------------PPDVVTFSSLIDGYCRCGQLDDALRIWSD 417

Query: 505 MEEHGIPPNKTKYKKI 520
           M +H I PN   +  I
Sbjct: 418 MAQHRIQPNVYTFSII 433


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 202/422 (47%), Gaps = 52/422 (12%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKH 110
           S ++PD  AYNAV++    + + +   Q+ ++M   G  PD++TYN+MI  LC R  +  
Sbjct: 131 SHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR-RKLG 189

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-- 168
           L + VL+++L       + T+  L+ A +  G +  A  +++ M         + R L  
Sbjct: 190 LALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEM---------LARGLLP 240

Query: 169 DLEDYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           D+  Y++       EG  +   E+   L               K   P+   Y  L++ +
Sbjct: 241 DMYTYNAIIRGMCKEGMVERAAELITSLTS-------------KGCKPDVISYNILLRAF 287

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
           +N+G+  +  +++  M  +      P+ VTY+ ++S+L + G +D A  VL  M    + 
Sbjct: 288 LNQGKWDEGEKLVAEMFSR---GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELT 344

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            +  +Y+ L+   C++ ++D A  ++  M  +  + PD+V+YN ++       ++  AL 
Sbjct: 345 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCL-PDIVNYNTILAALCKNGNANQALE 403

Query: 344 FFNEMRARGIAPTKISYTTLMKAF--------ALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            FN++R  G  P   SY T++ A         AL   P + +K  D          D + 
Sbjct: 404 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDP---------DEIT 454

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N L+   CR GLVEEA  +++ M+++GF P V +Y  +  G+   R+  +A+ ++ E+ 
Sbjct: 455 YNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMI 514

Query: 456 ER 457
           E+
Sbjct: 515 EK 516



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 146/321 (45%), Gaps = 21/321 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL     P    YT L++  + EG +++ +++L  M  +      PD  TY  ++  + K
Sbjct: 198 LLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR---GLLPDMYTYNAIIRGMCK 254

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G ++RA +++  +T  G   + I+YNILL+ +  Q + D+ ++L+ EM      EP+ V
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG-CEPNKV 313

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y+ILI           A++    M  + + P   SY  L+ A     +  LA  + D M
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + +  +  DIV +N ++   C+ G   +A  I  +++  G  PNV++Y ++ + +     
Sbjct: 374 ISNGCLP-DIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGD 432

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
              AL +   +  +      GV+          PDE   ++L     R     +A+ ++ 
Sbjct: 433 RSRALGMVPAMISK------GVD----------PDEITYNSLISCLCRDGLVEEAIGLLD 476

Query: 504 CMEEHGIPPNKTKYKKIYVEM 524
            ME+ G  P    Y  + + +
Sbjct: 477 DMEQSGFRPTVISYNIVLLGL 497



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 139/317 (43%), Gaps = 22/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ K + P+  + T L+KG+ N   +    R++  +    ++ + PD   Y  V+S   K
Sbjct: 94  LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL----ESHTEPDVFAYNAVISGFCK 149

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A QVL  M   G   + +TYNI++   C + ++  A ++L ++  D    P V+
Sbjct: 150 VNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLD-NCMPTVI 208

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y ILI+  I+      A+    EM ARG+ P   +Y  +++        + A ++    
Sbjct: 209 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITS- 267

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           L     K D++++N+L+  +   G  +E ++++  M   G  PN  TY  L + +    +
Sbjct: 268 LTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGR 327

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA+ + K + E+                 L PD    D L     +      A+ I+ 
Sbjct: 328 IDEAISVLKVMIEK----------------ELTPDTYSYDPLISALCKEGRLDLAIGIMD 371

Query: 504 CMEEHGIPPNKTKYKKI 520
            M  +G  P+   Y  I
Sbjct: 372 YMISNGCLPDIVNYNTI 388



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 189/455 (41%), Gaps = 72/455 (15%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+LP +  ++ ++  L      G   ++K+ D +           ++ +  P    Y  +
Sbjct: 167 GFLPDIVTYNIMIGSLCNRRKLG--LALKVLDQL-----------LLDNCMPTVITYTIL 213

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           + A    G   + ++L ++M   G  PD+ TYN +I+ +C           ++ER  E+ 
Sbjct: 214 IEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG--------MVERAAELI 265

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQA-MREGRRDVCKIIRELDLEDYSSENEGDDD 182
            +L     +  V +Y           +++A + +G+ D                 EG   
Sbjct: 266 TSLTSKGCKPDVISY---------NILLRAFLNQGKWD-----------------EG--- 296

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                 EKL+    +   E         PN   Y+ L+      GR+ + + +L  M  +
Sbjct: 297 ------EKLVAEMFSRGCE---------PNKVTYSILISSLCRFGRIDEAISVLKVMIEK 341

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E     PD  +Y  ++SAL K G +D A  ++  M   G   + + YN +L   C+    
Sbjct: 342 E---LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNA 398

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A E+  ++       P+V SYN +I       D + AL     M ++G+ P +I+Y +
Sbjct: 399 NQALEIFNKLR-GMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNS 457

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+         + A  + D+M      +  ++++N+++ G C++  +++A  +   M E 
Sbjct: 458 LISCLCRDGLVEEAIGLLDDM-EQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEK 516

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G  PN  TY  L  GI  A    EA+ L   +  R
Sbjct: 517 GCRPNETTYILLIEGIGFAGWRTEAMELANSLFSR 551



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 157/384 (40%), Gaps = 71/384 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G LP +  ++ ++  +   G             +V+R  +          KPD  +
Sbjct: 233 MLARGLLPDMYTYNAIIRGMCKEG-------------MVERAAELITSLTSKGCKPDVIS 279

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L A  N GK  +  +L  +M   G +P+ +TY+++I    R  R    + VL+ ++
Sbjct: 280 YNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMI 339

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E  +T    ++  L++A                 +EGR D+      + + DY   N   
Sbjct: 340 EKELTPDTYSYDPLISALC---------------KEGRLDL-----AIGIMDYMISN--- 376

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                      LP+ +N                  Y T++      G  +  + +   +R
Sbjct: 377 ---------GCLPDIVN------------------YNTILAALCKNGNANQALEIFNKLR 409

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   P+  +Y T++SAL   G   RA  ++  M   GV  + ITYN L+   C+  
Sbjct: 410 GM---GCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDG 466

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +++A  LL +M + +   P V+SYNI++ G   +     A+  F EM  +G  P + +Y
Sbjct: 467 LVEEAIGLLDDM-EQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTY 525

Query: 361 TTLMKAFALSS----QPKLANKVF 380
             L++    +       +LAN +F
Sbjct: 526 ILLIEGIGFAGWRTEAMELANSLF 549



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 3/177 (1%)

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
            KAG  + +   L  +   G   + I    L+KG+     I+KA  ++  +  ++  EPD
Sbjct: 79  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL--ESHTEPD 136

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           V +YN +I GF  ++    A    N M+ARG  P  ++Y  ++ +     +  LA KV D
Sbjct: 137 VFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLD 196

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           ++L D      ++ + +L+E     G + EA +++E M   G  P++ TY ++  G+
Sbjct: 197 QLLLD-NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 252



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 21/197 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           +L F   +  +G  P  I  T L+K F      + A++V +  + +   + D+ A+N ++
Sbjct: 87  SLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME--ILESHTEPDVFAYNAVI 144

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERC- 458
            G+C++  +E A +++ RMK  GF P++ TY  +   +   RK G AL +L + + + C 
Sbjct: 145 SGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM 204

Query: 459 ------------EVKKEGVNA-----DSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
                        + + G+N      +  L   L PD    +A+     +     +A E+
Sbjct: 205 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAEL 264

Query: 502 VACMEEHGIPPNKTKYK 518
           +  +   G  P+   Y 
Sbjct: 265 ITSLTSKGCKPDVISYN 281


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 148/314 (47%), Gaps = 23/314 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P        +   ++  RV   +     MRR   +   P+  T+  V+SAL K+G ++
Sbjct: 160 FLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRIS---PNSYTFNLVLSALCKSGKLE 216

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A +VL EM  +G+  N ++YN L+ G+C +  +  A +L   M  +  +EP+VV++N L
Sbjct: 217 KAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNG-LEPNVVTFNSL 275

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I GF        A  FF+EM+   + P  ++Y TL+  +       +A KV++EM+R+  
Sbjct: 276 IHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNG- 334

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           VK DI+ +N L+ G C+ G  ++A  +++ + +    PN +TY +L +G    +    A 
Sbjct: 335 VKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAF 394

Query: 449 LLWKE-IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
            L+K  ++  C                  P+E+    L    V+   F  A  ++  M  
Sbjct: 395 QLYKSMVRSGCH-----------------PNEQTFKMLTSAFVKNEDFEGAFNVLMDMFA 437

Query: 508 HGIPPNKTKYKKIY 521
             +  +     +IY
Sbjct: 438 RSMASDSNTLLEIY 451



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 164/405 (40%), Gaps = 64/405 (15%)

Query: 31  SVKLFDVVVK---RVRKFSDP-DIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLF 81
           S ++FD + K    + KF +  D+ S  K     P   + NA L++  +  +    L  +
Sbjct: 128 SPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFY 187

Query: 82  DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
            +M      P+  T+N+++    ++ +    V VL  +  +GIT  + ++ +L+A +   
Sbjct: 188 REMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNK 247

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
           G L IA  +   M  G+  +                                        
Sbjct: 248 GLLSIATKLKNLM--GKNGL---------------------------------------- 265

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                    PN   + +L+ G+  EG++ +  R    M+        P+ VTY T+++  
Sbjct: 266 --------EPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVT---PNTVTYNTLINGY 314

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
            + G+ + A +V  EM R GV A+ +TYN L+ G C++ +  KA  L++E+ D   + P+
Sbjct: 315 GQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKEL-DKENLVPN 373

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
             +Y+ LI G     +S  A   +  M   G  P + ++  L  AF  +   + A  V  
Sbjct: 374 ASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLM 433

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
           +M     +  D      + +G C+ G    A ++   M+     P
Sbjct: 434 DMFARS-MASDSNTLLEIYDGLCQCGKENLAMKLCHEMEARRLIP 477


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 177/387 (45%), Gaps = 10/387 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ V+    +  K +K   LF +M   G  PDV TY ++I    +A       ++
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +  +G +  + T+ +L+ AY+    +  A  I   M +       +     ++    
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC- 404

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSE---PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              G+     EV+ KL+  S +  S+   P     T APN   Y  L+ G     +V   
Sbjct: 405 -KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHA 463

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L AM     +   P+H+ Y  ++    KAG +D A++V  +MT+ G   +  TY  L
Sbjct: 464 HELLDAML---SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSL 520

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +    +  ++D A ++L +M  D+   P+VV+Y  +IDG   I +S  AL   + M  +G
Sbjct: 521 IDRMFKDGRLDLAMKVLSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            +P  ++YT L+     + +  L+  +F +M R      + V + +L+   C  GL+++A
Sbjct: 580 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG-CSPNYVTYRVLINHLCAAGLLDKA 638

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + ++  MK+  +   +  Y     G S
Sbjct: 639 RLLLGEMKQTYWPKYLQGYRCAIQGFS 665



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 184/442 (41%), Gaps = 83/442 (18%)

Query: 44  KFSDPDIVSDSKP---DTAAYNAVLN---------ACANLGKPKKFLQLFDQMHEFGAKP 91
           K   PD++  ++    +  A N VLN             +GK  K  QL  +M   G  P
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 286

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           D  TY+ +I     A++      + + +  +G+T  + T+  L+ ++   G +E A+ + 
Sbjct: 287 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           + MR                                       S+  S           P
Sbjct: 347 EEMR---------------------------------------SVGCS-----------P 356

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
               YT L+  Y+   +V     +     R  D    P+ VTY  +V  L KAG++ +A 
Sbjct: 357 TVVTYTALIHAYLKAKQVPQANDIF---HRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 413

Query: 272 QVLAEMT----------------RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           +V A++                 R  +  N +TY  L+ G C+  ++D A ELL  M   
Sbjct: 414 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 473

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
              EP+ + Y+ LIDGF        A   F +M   G  P+  +YT+L+       +  L
Sbjct: 474 G-CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 532

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A KV  +ML+D     ++V +  +++G CR+G  E+A +++  M+E G  PNV TY +L 
Sbjct: 533 AMKVLSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 591

Query: 436 NGISLARKPGEALLLWKEIKER 457
           +G+  A K   +L L+ ++  +
Sbjct: 592 DGLGKAGKIDLSLDLFTQMSRK 613



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 189/476 (39%), Gaps = 78/476 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRV--RKFSDPDIVSDSK--- 55
           M+ +G  P+   +  +V  L  +G+       K F+V  K +     +D D     +   
Sbjct: 384 MVDAGCRPNDVTYGALVDGLCKAGNIS-----KAFEVYAKLIGTSDSADSDFYFPCEDRH 438

Query: 56  ---PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
              P+   Y A+++      K     +L D M   G +P+ + Y+ +I    +A +    
Sbjct: 439 TLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 498

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             V  ++ + G    + T+ SL               I +  ++GR D+           
Sbjct: 499 QEVFLQMTKCGYLPSVHTYTSL---------------IDRMFKDGRLDLAM--------- 534

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                        +V  ++L +S  P             N   YT ++ G    G     
Sbjct: 535 -------------KVLSQMLKDSCTP-------------NVVTYTAMIDGLCRIGESEKA 568

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +++L  M   E+    P+ VTYT ++  L KAG +D +  +  +M+R G   N +TY +L
Sbjct: 569 LKLLSLM---EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVV-SYNILIDGFILIDDSAGALTFFNEMRAR 351
           +   C    +DKA+ LL EM       P  +  Y   I GF        +L    EM + 
Sbjct: 626 INHLCAAGLLDKARLLLGEMKQ--TYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESY 681

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP-RVKVDIVAWNMLVEGYCRMGLVE 410
           G  P    Y  L+  F+ + + ++A ++  EM+  P  VK D   +  L++  C    VE
Sbjct: 682 GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVE 741

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           EA R+   M   GF P ++ +  L  G+   +K  EAL L   I        EGVN
Sbjct: 742 EAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICH------EGVN 791



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 130/296 (43%), Gaps = 38/296 (12%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           + V        L   G  D+A Q++ EM R G   +  TY+ ++   C   +++KA  L 
Sbjct: 252 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 311

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           +EM     + PDV +Y ILID F        A   F EMR+ G +PT ++YT L+ A+  
Sbjct: 312 QEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLK 370

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM------KENG 423
           + Q   AN +F  M+ D   + + V +  LV+G C+ G + +A  +  ++       ++ 
Sbjct: 371 AKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 424 FY----------PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           FY          PNV TYG+L +G+  A K   A  L                 D+ L  
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL----------------DAMLSS 473

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMF 529
             +P+  + DAL D   +A     A E+   M + G  P+       Y  +  RMF
Sbjct: 474 GCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS----VHTYTSLIDRMF 525



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 146/333 (43%), Gaps = 37/333 (11%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P++  Y+ ++    +  +V     +   M+        PD  TYT ++ +  K
Sbjct: 279 MMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMV---GVTPDVYTYTILIDSFCK 335

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +++A+ +  EM  +G     +TY  L+  Y +  Q+ +A ++   M D A   P+ V
Sbjct: 336 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD-AGCRPNDV 394

Query: 324 SYNILIDGF----------------ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +Y  L+DG                 I   DSA +  +F       +AP  ++Y  L+   
Sbjct: 395 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 454

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + +   A+++ D ML     + + + ++ L++G+C+ G ++ A+ +  +M + G+ P+
Sbjct: 455 CKAHKVDHAHELLDAMLSSG-CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 513

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY SL   I    K G   L  K + +              L     P+     A+ D
Sbjct: 514 VHTYTSL---IDRMFKDGRLDLAMKVLSQM-------------LKDSCTPNVVTYTAMID 557

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R     KAL++++ MEE G  PN   Y  +
Sbjct: 558 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 590



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 110/484 (22%), Positives = 186/484 (38%), Gaps = 78/484 (16%)

Query: 82  DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
           D + +FG +P  +TYN ++++ + A +  L   V + + E G   CM  F     A+   
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESG--FCMDRFTVGCFAHALC 86

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF-EKLLPNSINPSS 200
            +   A+ +    RE      K+   L     S   E    D+   F  ++  NS     
Sbjct: 87  KEGRWADALDMIEREDF----KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSC---- 138

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
                     PN   Y TL+ G++ + ++    R++  M  +  N   P+   + ++V +
Sbjct: 139 ---------IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCN---PNPSLFNSLVHS 186

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI------------------ 302
                    A ++L  MT  G P   + YNI +   C Q ++                  
Sbjct: 187 YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLA 246

Query: 303 -----------------------DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
                                  DKA +L++EM     + PD  +Y+ +I          
Sbjct: 247 ANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVE 305

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A   F EM+  G+ P   +YT L+ +F  +   + A  +F+EM R       +V +  L
Sbjct: 306 KAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTAL 364

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           +  Y +   V +A  I  RM + G  PN  TYG+L +G+  A    +A  ++ ++    +
Sbjct: 365 IHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSD 424

Query: 460 VKKEGVNADSDLPPP------LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                 +ADSD   P      L P+     AL D   +A     A E++  M   G  PN
Sbjct: 425 ------SADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 478

Query: 514 KTKY 517
              Y
Sbjct: 479 HIVY 482


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 175/402 (43%), Gaps = 21/402 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A YN ++    + G+    L  +  M    A P V+TY +++    +++R      +
Sbjct: 66  PHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCA-PSVITYTILVDALCKSARISDASLI 124

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE ++E G    + T+ +L+  +   G+++ A  +   M E           + ++ Y  
Sbjct: 125 LEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCK 184

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +    D        KLL   +    EP  +          Y TLM   +  G+  D   +
Sbjct: 185 QERPQDG------AKLLQEMVKYGCEPNFIT---------YNTLMDSLVKSGKYIDAFNL 229

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M R++     P H T+  ++    K G +D A ++   MT  G   +  TYNI++ G
Sbjct: 230 AQMMLRRD---CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISG 286

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +ID A++LL  M + A   PDVV+YN ++ G         A   +  +R  G   
Sbjct: 287 ACRANRIDDARQLLERMTE-AGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFL 345

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++ +TL+     S +   A K+  EM R+     D+VA+ +L+ G+C+   ++++   
Sbjct: 346 DVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAP-DVVAYTILIHGFCKADQLDKSLAF 404

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              M + G  P V TY  + + +  + +  +  +L K + ER
Sbjct: 405 FSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLER 446



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 184/412 (44%), Gaps = 54/412 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVES-------------------VKLFDVVVKR 41
           M + G +PH   ++T++  L    D+G V+S                     L D + K 
Sbjct: 59  MEKRGIVPHNAVYNTIIKGLC---DNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKS 115

Query: 42  VRKFSDPDIV------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
            R  SD  ++      +   P+   YN ++N    LG   + + LF+QM E    PDV T
Sbjct: 116 AR-ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 174

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           YN++I    +  R      +L+ +++ G      T+ +L+ + V  G    A  + Q M 
Sbjct: 175 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 234

Query: 156 EGRRDVCK---IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
             RRD CK       L ++ +     G  D   E+F+ +        ++   LP  +   
Sbjct: 235 --RRD-CKPSHFTFNLMIDMFCK--VGQLDLAYELFQLM--------TDRGCLPDIYT-- 279

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  ++ G     R+ D  ++L    R  +    PD VTY ++VS L KA  +D A +
Sbjct: 280 ---YNIMISGACRANRIDDARQLL---ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYE 333

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V   +   G   + +T + L+ G C+  ++D A++LLREM  +    PDVV+Y ILI GF
Sbjct: 334 VYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS-APDVVAYTILIHGF 392

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
              D    +L FF+EM  +G  PT I+Y+ ++     S++ +    +   ML
Sbjct: 393 CKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTML 444



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 135/313 (43%), Gaps = 68/313 (21%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ--------------------------- 242
           +P+S  Y+TL+ G+          R+L  M ++                           
Sbjct: 30  SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALV 89

Query: 243 --EDNASH--PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
              D   H  P  +TYT +V AL K+  +  A  +L +M   G   N +TYN L+ G+C+
Sbjct: 90  HYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 149

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
              +D+A  L  +M +++   PDV +YNILIDG+   +          EM   G  P  I
Sbjct: 150 LGNMDEAVVLFNQMLENS-CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI 208

Query: 359 SYTTLMKA-----------------------------------FALSSQPKLANKVFDEM 383
           +Y TLM +                                   F    Q  LA ++F ++
Sbjct: 209 TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELF-QL 267

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + D     DI  +N+++ G CR   +++A++++ERM E G  P+V TY S+ +G+  A +
Sbjct: 268 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 327

Query: 444 PGEALLLWKEIKE 456
             EA  +++ ++ 
Sbjct: 328 VDEAYEVYEVLRN 340



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 19/270 (7%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD +TY+T+++   KA    +A ++L EM + G+  +   YN ++KG C   ++D A   
Sbjct: 31  PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
            R+M       P V++Y IL+D        + A     +M   G AP  ++Y TL+  F 
Sbjct: 91  YRDM--QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC 148

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                  A  +F++ML +     D+  +N+L++GYC+    ++  ++++ M + G  PN 
Sbjct: 149 KLGNMDEAVVLFNQMLENS-CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNF 207

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY +L + +  + K  +A  L + +  R                  KP     + + D+
Sbjct: 208 ITYNTLMDSLVKSGKYIDAFNLAQMMLRR----------------DCKPSHFTFNLMIDM 251

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
             +      A E+   M + G  P+   Y 
Sbjct: 252 FCKVGQLDLAYELFQLMTDRGCLPDIYTYN 281



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 31/282 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+   ++T++  L  SG    +++  L  ++++R           D KP    
Sbjct: 198 MVKYGCEPNFITYNTLMDSLVKSGK--YIDAFNLAQMMLRR-----------DCKPSHFT 244

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N +++    +G+     +LF  M + G  PD+ TYN+MI    RA+R      +LER+ 
Sbjct: 245 FNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMT 304

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G    + T+ S+V+       ++ A  + + +R G   +  ++    L D   ++   
Sbjct: 305 EAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFL-DVVTCSTLIDGLCKSRRL 363

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           DD      EKLL       S         AP+   YT L+ G+    ++  ++     M 
Sbjct: 364 DDA-----EKLLREMERNGS---------APDVVAYTILIHGFCKADQLDKSLAFFSEML 409

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              D    P  +TY+ V+  L K+  +     +L  M   GV
Sbjct: 410 ---DKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 33/164 (20%)

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N L+  F+    +  A   F        +P  I+Y+TL+  F  +   + A ++ DEM +
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 386 DPRV-----------------KVD----------------IVAWNMLVEGYCRMGLVEEA 412
              V                 +VD                ++ + +LV+  C+   + +A
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDA 121

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             I+E M E G  PNV TY +L NG        EA++L+ ++ E
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE 165


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 196/493 (39%), Gaps = 76/493 (15%)

Query: 55  KPDTAAYNAVLNACANLGKP-KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           KP    YN +LN    +G P  K   LF+ M   G  PD  TYN +I  C R S      
Sbjct: 65  KPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAA 124

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V + +  MG      T+ +L+  Y                                   
Sbjct: 125 AVFKDMKSMGFVPDKVTYNALLDVY----------------------------------- 149

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                G      E  E L    +N  S          P+   Y +L+  Y  +G + + +
Sbjct: 150 -----GKSRRTKEAMEVLREMEVNGCS----------PSIVTYNSLISAYARDGLLKEAM 194

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M     N    D  TYTT++S  V+AG  + A +V AEM   G   N  T+N L+
Sbjct: 195 ELKNQMVEGGINL---DVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALI 251

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           K +  + +  +  ++  E+ +   + PD+V++N L+  F      +     F EM+  G 
Sbjct: 252 KMHGNRGKFAEMMKVFEEIKNSCCV-PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 310

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P + +Y TL+ A++       A  ++  ML +  +  D+  +N ++    R GL E+++
Sbjct: 311 VPERDTYNTLISAYSRCGSFDQAMDIYKRML-EAGITPDLSTYNAVLAALARGGLWEQSE 369

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI------------------K 455
           +I   MK+    PN  TY SL +  +  ++ G  L L +EI                   
Sbjct: 370 KIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVN 429

Query: 456 ERCEVKKEGVNADSDLP-PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
            +C++  E   A  +L      PD   L+A+  I  R   F K  EI+  M E G  P+ 
Sbjct: 430 SKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSL 489

Query: 515 TKYKKIYVEMHSR 527
             Y  + + MHSR
Sbjct: 490 ATYNSL-MYMHSR 501



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 121/570 (21%), Positives = 212/570 (37%), Gaps = 134/570 (23%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YNA+L+      + K+ +++  +M   G  P ++TYN +I   AR       + +
Sbjct: 137 PDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMEL 196

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
             +++E GI L + T+ +L++ +V  G  E A  +   MR    + ++C     + +   
Sbjct: 197 KNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHG- 255

Query: 174 SSENEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT-----------------FAP 211
              N G   +  +VFE++     +P+ +  ++   +  +                  F P
Sbjct: 256 ---NRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 312

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
               Y TL+  Y    R     + +   +R  +    PD  TY  V++AL + G  +++ 
Sbjct: 313 ERDTYNTLISAY---SRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSE 369

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++ AEM       N +TY  LL  Y    +I +   L  E+     IEP  V    L+  
Sbjct: 370 KIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGV-IEPHAV----LLKT 424

Query: 332 FILIDDSAGALT---------------------------------------FFNEMRARG 352
            +L++     L                                          N M   G
Sbjct: 425 LVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESG 484

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P+  +Y +LM   + S   + + +V  E+L    +K D +++N ++  YCR G ++EA
Sbjct: 485 FTPSLATYNSLMYMHSRSENFERSEEVLKEILAKG-IKPDTISYNTVIFAYCRNGRMKEA 543

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
            RI   M+E+G  P+V TY +     +                           ADS   
Sbjct: 544 SRIFSEMRESGLVPDVITYNTFVASYA---------------------------ADS--- 573

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI---YVEMHSR-- 527
                                 F  A+++V  M +HG  PN+  Y  +   Y + + R  
Sbjct: 574 ---------------------MFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDD 612

Query: 528 --MFTSKHASQARQDRRRERKRAAEAFKFW 555
             MF S          R E+ R +E    W
Sbjct: 613 AIMFISSLHELDPHISREEKCRLSERLTKW 642



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 150/366 (40%), Gaps = 66/366 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G++P    ++T++S  +  G          FD  +   ++  +  I     PD + 
Sbjct: 305 MKRAGFVPERDTYNTLISAYSRCGS---------FDQAMDIYKRMLEAGIT----PDLST 351

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI- 119
           YNAVL A A  G  ++  ++F +M +   KP+ LTY  ++   A       ++ + E I 
Sbjct: 352 YNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEIC 411

Query: 120 ---------LEMGITLCMTTFQSLVAAYVGFGDLEIAE-----TIVQAMRE--GRRDVCK 163
                    L   + L  +    LV A V F +L+        + + AM    GRR +  
Sbjct: 412 SGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQM-- 469

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
                    ++  NE             + N +N S         F P+   Y +LM  Y
Sbjct: 470 ---------FTKTNE-------------ILNFMNESG--------FTPSLATYNSLM--Y 497

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
           M+  R  +  R    ++        PD ++Y TV+ A  + G M  A ++ +EM   G+ 
Sbjct: 498 MHS-RSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLV 556

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            + ITYN  +  Y      + A +++R M      +P+  +YN ++DG+   +    A+ 
Sbjct: 557 PDVITYNTFVASYAADSMFEDAIDVVRYMIKHG-CKPNQNTYNSVVDGYCKHNHRDDAIM 615

Query: 344 FFNEMR 349
           F + + 
Sbjct: 616 FISSLH 621



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 17/210 (8%)

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++  A  LL ++  D     DV +Y  LI   +       A+  F +M   G  PT I+Y
Sbjct: 13  KVSVAASLLNDLHKDG-FGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITY 71

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++  +     P    K   E +++  V  D   +N L+    R  L EEA  + + MK
Sbjct: 72  NVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMK 131

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             GF P+  TY +L +    +R+  EA+ + +E++         VN  S   P +     
Sbjct: 132 SMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREME---------VNGCS---PSIVTYNS 179

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGI 510
           L+ A A    R    ++A+E+   M E GI
Sbjct: 180 LISAYA----RDGLLKEAMELKNQMVEGGI 205



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPDT +YN V+ A    G+ K+  ++F +M E G  PDV+TYN  +   A  S     + 
Sbjct: 521 KPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAID 580

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRRDVCKIIREL 168
           V+  +++ G      T+ S+V  Y      + A   + ++ E      R + C++   L
Sbjct: 581 VVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHELDPHISREEKCRLSERL 639


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 130/542 (23%), Positives = 230/542 (42%), Gaps = 69/542 (12%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLF-DVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           P ++A + V+S LA S    P  S+  F  +V  R+             P+   +N +++
Sbjct: 165 PSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLH------------PNHYTFNLLVH 212

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
              + G     L     M  FG  PD +TYN ++    R         +L R+ + G+  
Sbjct: 213 THCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAP 272

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG------- 179
              T+ +LV+AY   G ++ A  +V+AM            E DL  Y+    G       
Sbjct: 273 TRPTYNTLVSAYARLGWIKQATKVVEAMTANGF-------EPDLWTYNVLAAGLCQAGKV 325

Query: 180 DD----DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-----------------YTT 218
           D+     D+ E    LLP+ +  ++      K    +  +                 +  
Sbjct: 326 DEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNI 385

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++KG   +G +      LG + +  D+   PD +TY T++ A  KAG++ +A  ++ EM 
Sbjct: 386 VIKGLCKDGELEGA---LGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMV 442

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R G+  +  T N +L   C++ + ++A+ LL+       + PD VSY  ++  +    +S
Sbjct: 443 RRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFM-PDEVSYGTVMAAYFKEYNS 501

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             AL  ++EM  + + P+  +Y TL+K  +   + K A    +E++    V  D   +N+
Sbjct: 502 EPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVP-DDTTYNI 560

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           ++  YC+ G +E A +   +M EN F P+V T  +L NG+ L  K  +AL L++   E+ 
Sbjct: 561 IIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKG 620

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           +                K D    + L     +      AL   A ME  G+ P+   Y 
Sbjct: 621 K----------------KVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYN 664

Query: 519 KI 520
            +
Sbjct: 665 VV 666



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 186/439 (42%), Gaps = 62/439 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN + +AC         L+L ++M E G K  ++T+N++IK   +       +  
Sbjct: 343 PDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGC 402

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR----DVCKIIRELDL 170
           L ++ + G+   + T+ +L+ A+   G++  A T++  M R G +     +  ++  L  
Sbjct: 403 LNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCK 462

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSIN-----------PSSEPPL------LPKTFAPNS 213
           E    E +G      +     +P+ ++            +SEP L      + K   P+ 
Sbjct: 463 EKRYEEAQGLLQSPPQ--RGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSI 520

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y TL+KG    GR+ + +  L  +    +    PD  TY  ++ A  K G ++ A Q 
Sbjct: 521 STYNTLIKGLSRMGRLKEAIDKLNELM---EKGLVPDDTTYNIIIHAYCKEGDLENAFQF 577

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             +M       + +T N L+ G C   ++DKA +L     +  K + DV++YN LI    
Sbjct: 578 HNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGK-KVDVITYNTLIQTMC 636

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS----------------------- 370
              D   AL FF +M ARG+ P   +Y  ++ A + +                       
Sbjct: 637 KDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSF 696

Query: 371 SQPKLANKVFDEML--RDPRVKVDIV---------AWNMLVEGYCRMGLVEEAKRIIERM 419
           S P L     DE    +D + + + V         A+  LV G C  G  +EAK I++ M
Sbjct: 697 SSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEM 756

Query: 420 KENGFYPNVATYGSLANGI 438
            + G   + +TY +L  G+
Sbjct: 757 MQKGMSVDSSTYITLMEGL 775



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 188/450 (41%), Gaps = 46/450 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++A A LG  K+  ++ + M   G +PD+ TYNV+     +A +      +
Sbjct: 272 PTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRL 331

Query: 116 LERILEMGITLC-MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            + +  +G  L  + T+ +L  A         A  +++ MRE       +   + ++   
Sbjct: 332 KDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLC 391

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT-----------TLMKGY 223
            + E          E  L   +N  ++  L P     N+ I+            TLM   
Sbjct: 392 KDGE---------LEGAL-GCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEM 441

Query: 224 MNEGRVSDTVRM----------------LGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           +  G   DT  +                 G ++        PD V+Y TV++A  K  + 
Sbjct: 442 VRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNS 501

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           + A ++  EM    +  +  TYN L+KG  +  ++ +A + L E+ +   + PD  +YNI
Sbjct: 502 EPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLV-PDDTTYNI 560

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           +I  +    D   A  F N+M      P  ++  TLM    L+ +   A K+F+  +   
Sbjct: 561 IIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKG 620

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           + KVD++ +N L++  C+ G V+ A      M+  G  P+  TY  + + +S A +  EA
Sbjct: 621 K-KVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEA 679

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
             +  ++ E       G  + S   P LKP
Sbjct: 680 QNMLHKLAE------SGTLSQSFSSPLLKP 703



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 143/362 (39%), Gaps = 60/362 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  V+ A       +  L+L+D+M E    P + TYN +IK  +R  R    +  
Sbjct: 483 PDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDK 542

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  ++E G+    TT+  ++ AY                       CK            
Sbjct: 543 LNELMEKGLVPDDTTYNIIIHAY-----------------------CK------------ 567

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EGD ++  +   K++ NS             F P+     TLM G    G++   +++
Sbjct: 568 --EGDLENAFQFHNKMVENS-------------FKPDVVTCNTLMNGLCLNGKLDKALKL 612

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
             +   +       D +TY T++  + K G +D A    A+M   G+  +  TYN++L  
Sbjct: 613 FESWVEKGKKV---DVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSA 669

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +  + ++A+ +L ++A+   +     S  +L    +   +S        E        
Sbjct: 670 LSEAGRTEEAQNMLHKLAESGTLS-QSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDS 728

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +YT L+     S Q K A  + DEM++   + VD   +  L+E     GLV+  KR+
Sbjct: 729 ASEAYTKLVNGLCTSGQFKEAKAILDEMMQK-GMSVDSSTYITLME-----GLVKRQKRL 782

Query: 416 IE 417
             
Sbjct: 783 TH 784


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 174/447 (38%), Gaps = 68/447 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+V  ++TV+  L  +              VV R        I    KPD   
Sbjct: 229 MMDRGIQPNVVTYTTVIDGLCKAQ-------------VVDRAEGVFQQMIDKGVKPDNDT 275

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++   ++GK K+ +++ ++M   G KPD  TY  ++       R     F+ + ++
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMI 335

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   +  +  L+  Y   G L     ++  M E                        
Sbjct: 336 RKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVE------------------------ 371

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                        +P+  I+  +   Y  +  + + + +   M+
Sbjct: 372 --------------------------NGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK 405

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q      PD V Y  ++ AL K G +D A     +M   GV  N   +N L+ G C   
Sbjct: 406 QQ---GLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVD 462

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           + +KAKE   EM +   I PDVV +N ++           A    + M   G  P  ISY
Sbjct: 463 KWEKAKEFYFEMLNQG-IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISY 521

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTL+    L  +   A K  D ML    +K D   +N L+ GYCR G +++A  +   M 
Sbjct: 522 TTLIGGHCLVGRIDEAAKSLDVML-SVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREML 580

Query: 421 ENGFYPNVATYGSLANGISLARKPGEA 447
            NG  P V TY ++ +G+   R+  EA
Sbjct: 581 RNGITPGVVTYSTILHGLFTTRRFSEA 607



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/547 (21%), Positives = 222/547 (40%), Gaps = 92/547 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   Y+ ++     +G+ +     F  + + G + + +  N ++K LC        +  
Sbjct: 92  PDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDI 151

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK---IIRELDLE 171
           +++R+ E+G T  + ++ +L+  +      E A  ++  M + +   C    +   + + 
Sbjct: 152 LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVIN 211

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTF 209
            + +E  G  D    +F +++   I P+                          ++ K  
Sbjct: 212 GFFTE--GQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGS 266
            P++  Y  L+ GY++ G+  + VRML      E+ ++H   PD  TY ++++ L   G 
Sbjct: 270 KPDNDTYNCLIHGYLSIGKWKEVVRML------EEMSAHGLKPDCYTYGSLLNYLCNNGR 323

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA---------- 316
              AR +   M R G+  N   Y IL+ GY  +  + +  +LL  M ++           
Sbjct: 324 CREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNI 383

Query: 317 ------------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
                                    + PDVV+Y  LID    +     A+  FN+M   G
Sbjct: 384 IFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEG 443

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +AP    + +L+       + + A + + EML +  ++ D+V +N ++   C  G V +A
Sbjct: 444 VAPNIFVFNSLVYGLCTVDKWEKAKEFYFEML-NQGIRPDVVFFNTILCNLCTKGQVMKA 502

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           +R+I+ M+  G  P V +Y +L  G  L  +  EA                  + D  L 
Sbjct: 503 QRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEA----------------AKSLDVMLS 546

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             LKPDE   + L     RA     A  +   M  +GI P    Y  I   +H  +FT++
Sbjct: 547 VGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI---LHG-LFTTR 602

Query: 533 HASQARQ 539
             S+A++
Sbjct: 603 RFSEAKE 609



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 173/404 (42%), Gaps = 25/404 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y ++LN   N G+ ++   LFD M   G KP+V  Y ++I   A       +  
Sbjct: 305 KPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHD 364

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VC 162
           +L  ++E G++     F  +  AY     ++ A  I   M++                +C
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALC 424

Query: 163 KIIRELD--LEDYSSENEGDDDD----DDEVFEKLLPNSINPSSEP--PLLPKTFAPNSR 214
           K+ R  D  L+     NEG   +    +  V+     +    + E    +L +   P+  
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            + T++     +G+V    R++  M R     + P  ++YTT++      G +D A + L
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERV---GTRPGVISYTTLIGGHCLVGRIDEAAKSL 541

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M  +G+  +  TYN LL GYC+  +ID A  + REM  +  I P VV+Y+ ++ G   
Sbjct: 542 DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG-ITPGVVTYSTILHGLFT 600

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
               + A   +  M   G       Y  ++   + ++    A K+F + L     +++I 
Sbjct: 601 TRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLF-QSLCSKDFQLEIT 659

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            +N+++    + G  E+A  +   +   G  P+V TY  +A  +
Sbjct: 660 TFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENL 703


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 200/464 (43%), Gaps = 67/464 (14%)

Query: 30  ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
           E+++ F  + KR R F          P T + N +L+  A LGK     + F  M   GA
Sbjct: 78  EAIQCFSKM-KRFRVF----------PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGA 126

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           +P V TYN+MI    +         + E +   G+     T+ S++  +   G L+    
Sbjct: 127 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 186

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
             + M    +D+C    E D+  Y++            F K     I       +     
Sbjct: 187 FFEEM----KDMCC---EPDVITYNAL--------INCFCKFGKLPIGLEFYREMKGNGL 231

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN   Y+TL+  +  EG +   ++    MRR       P+  TYT+++ A  K G++  
Sbjct: 232 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRV---GLVPNEYTYTSLIDANCKIGNLSD 288

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A ++  EM ++GV  N +TY  L+ G C   ++ +A+EL  +M D A + P++ SYN LI
Sbjct: 289 AFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM-DTAGVIPNLASYNALI 347

Query: 330 DGFILIDDSAGALTFFNEMRARGIAP---------------------------------- 355
            GF+   +   AL   NE++ RGI P                                  
Sbjct: 348 HGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIK 407

Query: 356 -TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              + YTTLM A+  S  P     + DEM ++  ++V +V + +L++G C+  LV +A  
Sbjct: 408 ANSLIYTTLMDAYFKSGNPTEGLHLLDEM-KELDIEVTVVTFCVLIDGLCKNKLVSKAVD 466

Query: 415 IIERMKEN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              R+  + G   N A + ++ +G+    +   A  L++++ ++
Sbjct: 467 YFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 510



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 29/311 (9%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVR----MLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           P +R    L+  +   G+  D  R    M+GA  R       P   TY  ++  + K G 
Sbjct: 93  PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGAR-------PTVFTYNIMIDCMCKEGD 145

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           ++ AR +  EM   G+  + +TYN ++ G+ +  ++D       EM D    EPDV++YN
Sbjct: 146 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC-CEPDVITYN 204

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LI+ F         L F+ EM+  G+ P  +SY+TL+ AF      + A K + +M R 
Sbjct: 205 ALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRV 264

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V  +   +  L++  C++G + +A R+   M + G   NV TY +L +G+  A +  E
Sbjct: 265 GLVPNE-YTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKE 323

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  L+ ++                    + P+    +AL    V+A    +ALE++  ++
Sbjct: 324 AEELFGKMD----------------TAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 367

Query: 507 EHGIPPNKTKY 517
             GI P+   Y
Sbjct: 368 GRGIKPDLLLY 378



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 184/407 (45%), Gaps = 33/407 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
           +PD   YNA++N     GK    L+ + +M   G KP+V++Y+ ++   C     +  + 
Sbjct: 197 EPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIK 256

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F ++ +  +G+     T+ SL+ A    G+L        A R G  ++ ++  E ++  Y
Sbjct: 257 FYVD-MRRVGLVPNEYTYTSLIDANCKIGNLS------DAFRLG-NEMLQVGVEWNVVTY 308

Query: 174 SSENEGDDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++  +G  D     + +E+F K+    +              PN   Y  L+ G++    
Sbjct: 309 TALIDGLCDAERMKEAEELFGKMDTAGV-------------IPNLASYNALIHGFVKAKN 355

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +   + +L  ++ +      PD + Y T +  L     ++ A+ V+ EM   G+ AN + 
Sbjct: 356 MDRALELLNELKGR---GIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 412

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y  L+  Y +     +   LL EM  +  IE  VV++ +LIDG       + A+ +FN +
Sbjct: 413 YTTLMDAYFKSGNPTEGLHLLDEMK-ELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRI 471

Query: 349 RAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
               G+      +T ++      +Q + A  +F++M++   V  D  A+  L++G  + G
Sbjct: 472 SNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP-DRTAYTSLMDGNFKQG 530

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            V EA  + ++M E G   ++  Y SL  G+S   +  +A    +E+
Sbjct: 531 NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 577



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 180/413 (43%), Gaps = 34/413 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V ++ST+V        +G ++    F V ++RV             P+   
Sbjct: 226 MKGNGLKPNVVSYSTLVDAFCK---EGMMQQAIKFYVDMRRVGLV----------PNEYT 272

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++A   +G      +L ++M + G + +V+TY  +I     A R      +  ++ 
Sbjct: 273 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMD 332

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + ++ +L+  +V   +++ A  ++  ++ GR        + DL  Y +   G 
Sbjct: 333 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELK-GRG------IKPDLLLYGTFIWGL 385

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
              +     K++ N +               NS IYTTLM  Y   G  ++ + +L  M+
Sbjct: 386 CSLEKIEAAKVVMNEMKECG--------IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMK 437

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYNILLKGYCQQ 299
             +   +    VT+  ++  L K   + +A      ++   G+ AN   +  ++ G C+ 
Sbjct: 438 ELDIEVTV---VTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 494

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q++ A  L  +M     + PD  +Y  L+DG     +   AL   ++M   G+    ++
Sbjct: 495 NQVEAATTLFEQMVQKGLV-PDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLA 553

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           YT+L+   +  +Q + A    +EM+ +     +++  ++L + Y  +G ++EA
Sbjct: 554 YTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHY-ELGCIDEA 605



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 17/204 (8%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           ++ P   S N L+  F  +  +     FF +M   G  PT  +Y  ++         + A
Sbjct: 90  RVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAA 149

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +F+EM     V  D V +N +++G+ ++G +++     E MK+    P+V TY +L N
Sbjct: 150 RGLFEEMKFRGLVP-DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 208

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
                 K    L  ++E+K                   LKP+      L D   +    +
Sbjct: 209 CFCKFGKLPIGLEFYREMKGN----------------GLKPNVVSYSTLVDAFCKEGMMQ 252

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
           +A++    M   G+ PN+  Y  +
Sbjct: 253 QAIKFYVDMRRVGLVPNEYTYTSL 276



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 24/274 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+ A+YNA+++         + L+L +++   G KPD+L Y   I       +      V
Sbjct: 338 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 397

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV-----CKIIREL-- 168
           +  + E GI      + +L+ AY   G+      ++  M+E   +V     C +I  L  
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457

Query: 169 -----DLEDYSS--ENEGDDDDDDEVFEKLLP-----NSINPSSE--PPLLPKTFAPNSR 214
                   DY +   N+     +  +F  ++      N +  ++     ++ K   P+  
Sbjct: 458 NKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 517

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            YT+LM G   +G V + + +   M    +     D + YT++V  L     + +AR  L
Sbjct: 518 AYTSLMDGNFKQGNVLEALALRDKM---AEIGMKLDLLAYTSLVWGLSHCNQLQKARSFL 574

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
            EM   G+  + +    +LK + +   ID+A EL
Sbjct: 575 EEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 608


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 147/310 (47%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++  +TTL++G   EG++ + + +   M  +      P+ VTY T+++ L K   +  A
Sbjct: 113 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGE---GFQPNVVTYGTLINGLCKDRQVTEA 169

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             + +EM   G+  N +TYN L+ G C+  +      L+ EM  D+KI PDV + N ++D
Sbjct: 170 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV-DSKIMPDVFTLNTVVD 228

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                   A A    + M  RG+ P  ++Y  LM    L ++  +A KVFD M+    V 
Sbjct: 229 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV- 287

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +++++N L+ GYC++  V++A  + E M      PN  TY +L +G+    +  +A+ L
Sbjct: 288 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 347

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           + E+  R ++                PD      L+D   +     KA+ ++  +E    
Sbjct: 348 FHEMVARGQI----------------PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW 391

Query: 511 PPNKTKYKKI 520
            P+   Y  I
Sbjct: 392 DPDIQIYTTI 401



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 176/406 (43%), Gaps = 41/406 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +  +L + A +      L L  QM  FG  PDV T N++I       R      V
Sbjct: 579 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 638

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++L++G       FQ  V  Y   G L                +CK+I +    D  +
Sbjct: 639 LAKLLKLG-------FQPDVVTY---GTL-------------MNGLCKMITKGISPDIFT 675

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS---DT 232
            N       +    K +   +N      ++     PN  +++T++     EG ++   D 
Sbjct: 676 YNSLIHALCNLCEWKHVTTLLNE-----MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V M+  ++R  +    PD VTYT ++        MD A +V   M   G   N  +YNIL
Sbjct: 731 VDMM--IKRGVE----PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNIL 784

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + GYCQ  ++DKA  LL +M+    I  D V+YN LI G   +     A+  F+EM A G
Sbjct: 785 INGYCQIQRMDKAMGLLEQMSLQGLIA-DTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 843

Query: 353 IAPTKISYTTLMKAFALSSQPKLANK-VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
             P  ++Y  L+    L     LA   V  + +    +  DI+ +N+ ++G CR G +E 
Sbjct: 844 QIPDLVTYRILLD--YLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEA 901

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           A+ +   +   G  P+V TY  + +G+       EA  L++++ E 
Sbjct: 902 ARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDEN 947



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 180/437 (41%), Gaps = 55/437 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L + A        L L  QM  FG  PDV T  ++I      +R       
Sbjct: 43  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 102

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
           L +IL++G     TTF +L+      G +  A  +   M  EG +         ++  Y 
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQP--------NVVTYG 154

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +   G   D      + +  + N  SE  ++ K  +PN   Y +L+ G     ++ +   
Sbjct: 155 TLINGLCKD------RQVTEAFNIFSE--MITKGISPNIVTYNSLIHGLC---KLCEWKH 203

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M    D+   PD  T  TVV AL K G +  A  V+  M   GV  N +TYN L+ 
Sbjct: 204 VTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMD 263

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C + ++D A ++   M     +  +V+SYN LI+G+  I     A+  F EM  + + 
Sbjct: 264 GHCLRNEVDVAVKVFDTMVHKDCVA-NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT 322

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV------------------------- 389
           P  ++Y TL+       + + A  +F EM+   ++                         
Sbjct: 323 PNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMAL 382

Query: 390 ---------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                      DI  +  +++G CR G +E+A+ +   +   G  PNV TY  + +G+  
Sbjct: 383 LKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 442

Query: 441 ARKPGEALLLWKEIKER 457
                EA  L+ E+ + 
Sbjct: 443 QGLLAEASKLFSEMNKN 459



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 118/578 (20%), Positives = 221/578 (38%), Gaps = 97/578 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ S  +P V   +TVV  L   G        +  DVV   + +  +P++V+        
Sbjct: 211 MVDSKIMPDVFTLNTVVDALCKEG-----MVAEAHDVVDMMIHRGVEPNVVT-------- 257

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA+++      +    +++FD M       +V++YN +I    +       +++ E + 
Sbjct: 258 YNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 317

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              +T    T+ +L+      G L+ A ++   M   R  +  ++    L DY  +N   
Sbjct: 318 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV-ARGQIPDLVTYRTLSDYLCKNRHL 376

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           D          L  +I  S+        + P+ +IYTT++ G    G + D   +   + 
Sbjct: 377 DK------AMALLKAIEGSN--------WDPDIQIYTTILDGMCRAGELEDARDLFSNLS 422

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+  TY  ++  L K G +  A ++ +EM + G   N  TYN++ +G+ +  
Sbjct: 423 SK---GLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 479

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILI-----DGF------ILIDDSAG--------- 340
           +  +  ELL EM        DV +  +L+     DG       IL   S+          
Sbjct: 480 EALRTIELLEEMLARG-FSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMR 538

Query: 341 --------------------------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
                                     AL+ FN M      P+ + +T L+ + A      
Sbjct: 539 SLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYS 598

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
               +  +M     +  D+   N+L+  +C +  +  A  ++ ++ + GF P+V TYG+L
Sbjct: 599 TVLSLSTQM-DSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTL 657

Query: 435 ANGISLARKPG------------EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
            NG+      G             AL    E K    +  E VN+       + P+  + 
Sbjct: 658 MNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK------IMPNVVVF 711

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             + D   +      A ++V  M + G+ P+   Y  +
Sbjct: 712 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTAL 749



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 184/419 (43%), Gaps = 39/419 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P+V  + T+++ L         +  + F++  + + K   P+IV+        
Sbjct: 141 MIGEGFQPNVVTYGTLINGLCKDR-----QVTEAFNIFSEMITKGISPNIVT-------- 187

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLLVFVLE 117
           YN++++    L + K    L ++M +    PDV T N ++  LC     +  H    V++
Sbjct: 188 YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAH---DVVD 244

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
            ++  G+   + T+ +L+  +    ++++A  +   M   +  V  +I    L +   + 
Sbjct: 245 MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH-KDCVANVISYNTLINGYCKI 303

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +   D    +FE+             +  +   PN+  Y TL+ G  + GR+ D + +  
Sbjct: 304 QS-VDKAMYLFEE-------------MSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 349

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M  +      PD VTY T+   L K   +D+A  +L  +       +   Y  +L G C
Sbjct: 350 EMVAR---GQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMC 406

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  +++ A++L   ++    ++P+V +YNI+I G       A A   F+EM   G +P  
Sbjct: 407 RAGELEDARDLFSNLSSKG-LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 465

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +Y  + + F  +++     ++ +EML      VD+    +LV      GL +  K+I+
Sbjct: 466 CTYNLITRGFLRNNEALRTIELLEEMLAR-GFSVDVSTTTLLVGMLSDDGLDQSVKQIL 523



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 105/287 (36%), Gaps = 56/287 (19%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           ++ T  S  +   ++D A      M     P + + +N LL    +         L R+M
Sbjct: 12  SHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM 71

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            D   I PDV +  I+I+          +L   N +          +++ L K   L  Q
Sbjct: 72  -DSFGIPPDVYTLAIVIN----------SLCHLNRV--------DFAFSALAKILKLGHQ 112

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
           P                  D   +  L+ G C  G + EA  + ++M   GF PNV TYG
Sbjct: 113 P------------------DATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYG 154

Query: 433 SLANGISLARKPGEALLLWKEIKER-------------------CEVKKEGVNADSDLPP 473
           +L NG+   R+  EA  ++ E+  +                   CE K      +  +  
Sbjct: 155 TLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDS 214

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            + PD   L+ + D   +     +A ++V  M   G+ PN   Y  +
Sbjct: 215 KIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 261



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 107/266 (40%), Gaps = 38/266 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ S  +P+V  +STVV  L   G       V   D+++KR             +PD   
Sbjct: 699 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV--VDMMIKR-----------GVEPDVVT 745

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++      +  + +++FD M   G  P+V +YN++I    +  R    + +LE++ 
Sbjct: 746 YTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMS 805

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN--- 177
             G+     T+ +L+      G L+ A  +   M    + +  ++    L DY  +N   
Sbjct: 806 LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ-IPDLVTYRILLDYLCKNHHL 864

Query: 178 ----------EGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTL 219
                     EG + D D +   +  + +  + E          L  K   P+ R Y  +
Sbjct: 865 AEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIM 924

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDN 245
           + G    G + +  ++    R+ ++N
Sbjct: 925 IHGLCKRGLLDEANKLF---RKMDEN 947


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 125/542 (23%), Positives = 225/542 (41%), Gaps = 78/542 (14%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  + DT  Y   + A   L   K  ++  D M + G +P+V  YNV+I    R  R   
Sbjct: 170 SGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRD 229

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------R 159
              + + +  + +   + T+ +L+  Y   G+L+ A  + + M+E               
Sbjct: 230 AEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLS 289

Query: 160 DVCK---------IIRELDLE-------DYSSENEG-----DDDDDDEVFEKLLPNSI-- 196
            +CK         +++E+++         YS   +G     D +   E++E+     I  
Sbjct: 290 GLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRI 349

Query: 197 NPSSEPPLLP---------------KTFAPNSR-----IYTTLMKGYMNEGRVSDTVRML 236
           N  +   LL                K F  N       IY T + GY    R+ D  + +
Sbjct: 350 NNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYC---RIGDMNKAI 406

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             + R E     P+ +T+ +++        MD+A + + +M   GV  +  TYN L+ GY
Sbjct: 407 LTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGY 466

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            +    D+  ++L +M ++  ++P+VVSY  LI+          A     +M  RG+ P 
Sbjct: 467 GKLCTFDRCFQILEQM-EEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPN 525

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
              Y  L+    +  + K A + FDEM+R   +   +V +N+L++G C+ G + EA+  +
Sbjct: 526 AQVYNMLIDGSCMVGKVKDALRFFDEMMRS-EISPTLVTYNVLIDGLCKKGKLTEAEDFL 584

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEVKKE 463
            ++  +G  P+V TY SL +G + A    + L L++ +K                   KE
Sbjct: 585 TQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKE 644

Query: 464 GVNA-----DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           G+       +  L   L PD  + +A+          +KA  +   M + GI P+K  Y 
Sbjct: 645 GIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYN 704

Query: 519 KI 520
            +
Sbjct: 705 SL 706



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 165/407 (40%), Gaps = 66/407 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P++  +N++++   ++ +  K  +   +M E G  P V TYN +I    +         
Sbjct: 418 RPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQ 477

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +LE++ E+G+   + ++ SL+      G +  AE +++ M      +C+ +         
Sbjct: 478 ILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDM------ICRGV--------- 522

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                               PN+++Y  L+ G    G+V D +R
Sbjct: 523 -----------------------------------LPNAQVYNMLIDGSCMVGKVKDALR 547

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               M R E     P  VTY  ++  L K G +  A   L ++T  G   + ITYN L+ 
Sbjct: 548 FFDEMMRSE---ISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLIS 604

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI-----DGFILIDDSAGALTFFNEMR 349
           GY     + K   L   M  +  I+P V +Y+ LI     +G  L++        +NEM 
Sbjct: 605 GYANAGNVSKCLGLYETMK-NLGIKPTVRTYHPLISGCSKEGIELVEK------LYNEML 657

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              + P ++ Y  ++  +A     + A  +   ML D  +  D + +N L+ G+ R G +
Sbjct: 658 QMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGML-DQGIHPDKMTYNSLILGHFREGKL 716

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              K ++  MK     P   TY  L  G    +    A + ++E+ E
Sbjct: 717 SNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVE 763



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q  K  +L  E+ +++    D   Y   I   + + +    + F + MR RG+ P    Y
Sbjct: 156 QFVKVVDLFMEI-ENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIY 214

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+       + + A K+FDEM     V   IV +N L++GYC++G ++ A ++ ERMK
Sbjct: 215 NVLIGGLCREKRIRDAEKMFDEMCNINLVG-SIVTYNTLIDGYCKVGELDAAFKMRERMK 273

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           E    PN+ T+ SL +G+   RK  EA  L KE++
Sbjct: 274 EKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEME 308



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 124/307 (40%), Gaps = 56/307 (18%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V+++      E++    D   Y   + A VK  ++    + L  M + GV  N   YN+L
Sbjct: 158 VKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVL 217

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C++ +I  A+++  EM +   +   +V+YN LIDG+  + +   A      M+ + 
Sbjct: 218 IGGLCREKRIRDAEKMFDEMCN-INLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKS 276

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           +AP                                    +I+ +N L+ G C+M  ++EA
Sbjct: 277 VAP------------------------------------NIITFNSLLSGLCKMRKMKEA 300

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------------- 457
           + +++ M+ NGF P+  TY  L +G+        A+ L+++  E+               
Sbjct: 301 RSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNG 360

Query: 458 -C---EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            C   +V+K            L  DE + +   +   R     KA+  +  ME  G+ PN
Sbjct: 361 LCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPN 420

Query: 514 KTKYKKI 520
              +  +
Sbjct: 421 SITFNSL 427



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 144/355 (40%), Gaps = 45/355 (12%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V ++ ++++ L   G     E V L D++ + V             P+   YN +
Sbjct: 486 GVKPNVVSYGSLINCLCKDGKILEAEIV-LRDMICRGVL------------PNAQVYNML 532

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           ++    +GK K  L+ FD+M      P ++TYNV+I  LC +        F L +I   G
Sbjct: 533 IDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDF-LTQITSSG 591

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGDDD 182
            +  + T+ SL++ Y   G++     + + M+  G +   +         Y     G   
Sbjct: 592 HSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRT--------YHPLISGCSK 643

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           +  E+ EKL            +L     P+  +Y  ++  Y     + +T +     +  
Sbjct: 644 EGIELVEKLYN---------EMLQMNLLPDRVVYNAMIHCY---AEIGNTQKAYSLHQGM 691

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D   HPD +TY +++    + G +   + ++  M    +     TY+IL+KG+C     
Sbjct: 692 LDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDF 751

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL----TFFNEMRARGI 353
             A    REM ++  + P+    N L  G     +  G L       +EM  +GI
Sbjct: 752 SGAYVWYREMVENNFL-PNASICNELTAGL----EQEGRLQEVQVICSEMNVKGI 801


>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g22960, mitochondrial; Flags: Precursor
 gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 718

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 198/467 (42%), Gaps = 73/467 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P     N VL    +     K   +++ M E G  P V+T+N M+  C +A         
Sbjct: 201 PSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGD------- 253

Query: 116 LERI----LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
           LER+    LEM    I     T+  L+  +   G +E A      MR     V       
Sbjct: 254 LERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNP 313

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP------------------PLLPKTFA 210
            +E Y  +  G  DD   V +++L   I P++                     LL    A
Sbjct: 314 LIEGYCKQ--GLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAA 371

Query: 211 PNSRIYTTLMKGYMNEGR-----------------------------VSDTVRMLGAMRR 241
           P+   Y TLM GY+  G+                             + ++  + GA R 
Sbjct: 372 PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRL 431

Query: 242 QEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           +E+  +    PD +TYTT+V   VK G++  A +V  EM R G+  +   Y     G  +
Sbjct: 432 KEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELR 491

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
               DKA  L  EM       PD+  YN+ IDG   + +   A+ F  ++   G+ P  +
Sbjct: 492 LGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHV 551

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +YTT+++ +  + Q K+A  ++DEMLR  R+   ++ + +L+ G+ + G +E+A +    
Sbjct: 552 TYTTVIRGYLENGQFKMARNLYDEMLR-KRLYPSVITYFVLIYGHAKAGRLEQAFQYSTE 610

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
           MK+ G  PNV T+ +L  G+  A    EA       +  C++++EG+
Sbjct: 611 MKKRGVRPNVMTHNALLYGMCKAGNIDEAY------RYLCKMEEEGI 651



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 146/368 (39%), Gaps = 43/368 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGP--VESVKLFDVVVK--------RVRKFSDP 48
           ML +G  P    ++  +  L   G  DD    + S+   DVV          ++ KF + 
Sbjct: 334 MLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEA 393

Query: 49  DIV------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
            ++       D  P    YN +++     G  +   +L ++M      PDV+TY  ++K 
Sbjct: 394 SLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKG 453

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA--------------- 147
             +     +   V + +L  GI      + +     +  GD + A               
Sbjct: 454 FVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAP 513

Query: 148 -ETIVQAMREGRRDVCKIIRELDLED--YSSENEGDDDDDDEVFEKLLPNS---INPSSE 201
             TI     +G   V  +++ ++ +   +      D      V    L N    +  +  
Sbjct: 514 DLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLY 573

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
             +L K   P+   Y  L+ G+   GR+    +    M+++      P+ +T+  ++  +
Sbjct: 574 DEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKR---GVRPNVMTHNALLYGM 630

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
            KAG++D A + L +M   G+P N+ +Y +L+   C   + ++  +L +EM  D +IEPD
Sbjct: 631 CKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEML-DKEIEPD 689

Query: 322 VVSYNILI 329
             ++  L 
Sbjct: 690 GYTHRALF 697


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 170/382 (44%), Gaps = 30/382 (7%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+L+     G  ++ + +F  M      PD   Y  M+     A R      +LE  +
Sbjct: 145 YTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAM 204

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDLEDYSS 175
             G    +  + +L+  Y   G++E A  + + M   R     R   ++I  L       
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLC------ 258

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +    +F +++   +              PN   YT L++G  NEG +    R+
Sbjct: 259 -KSGKVERAMVLFSRMVEAGLE-------------PNVVTYTALIQGQCNEGHLQCAFRL 304

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M   E N   P+  T++ ++ AL K   ++ A+  L  + + GV  N + Y  L+ G
Sbjct: 305 LHLM---ETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDG 361

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +ID A EL+++M  +  + PD  SY+ LIDG       + A     +M  +GI  
Sbjct: 362 LCKTGKIDAADELMQKMISEGFV-PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQA 420

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           + ++YT ++         +   K+FD+M+    +  DIV + + V  YC  G +E+A+ +
Sbjct: 421 SPVTYTIIIDELVREVGSEGPKKIFDKMIAT-GINPDIVTYTVFVRSYCEEGRMEDAESM 479

Query: 416 IERMKENGFYPNVATYGSLANG 437
           I +M + G +PN+ TY +L  G
Sbjct: 480 IVQMVDRGVFPNLVTYNTLIRG 501



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 179/377 (47%), Gaps = 25/377 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL-LV 113
            P+   Y  +++     GK ++ + LF +M E G +P+V+TY  +I+   + +  HL   
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQ--GQCNEGHLQCA 301

Query: 114 FVLERILEM-GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           F L  ++E  G+     TF  L+ A      +E A+  + ++ +    V +++    ++ 
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDG 361

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                 G  D  DE+ +K++                F P++  Y++L+ G   + ++S  
Sbjct: 362 LC--KTGKIDAADELMQKMISEG-------------FVPDAHSYSSLIDGLCRQKKLSQA 406

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             ML  M  +   AS    VTYT ++  LV+    +  +++  +M   G+  + +TY + 
Sbjct: 407 TLMLEDMMEKGIQASP---VTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVF 463

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           ++ YC++ +++ A+ ++ +M D   + P++V+YN LI G+  +   + A + F  M  +G
Sbjct: 464 VRSYCEEGRMEDAESMIVQMVDRG-VFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKG 522

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFD--EMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             P + SYT L++     S    +  ++   +M        D + W +L+ G  + G V 
Sbjct: 523 WKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYDEIVWKILIYGLLQKGSVA 582

Query: 411 EAKRIIERMKENGFYPN 427
           E   ++  MKE+G+ P+
Sbjct: 583 EFSSLLSVMKEHGYQPS 599



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP++ +Y T++ G    GR   T      +     N   P+ V Y  ++     AG M+ 
Sbjct: 174 APDTHVYATMVHGLCEAGR---TEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEH 230

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V   M       N  TY  L+ G C+  ++++A  L   M + A +EP+VV+Y  LI
Sbjct: 231 ALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE-AGLEPNVVTYTALI 289

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G         A    + M   G+ P   +++ L+ A     + + A ++F   L    V
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEA-QLFLGSLVKKGV 348

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           KV+ V +  L++G C+ G ++ A  ++++M   GF P+  +Y SL +G+   +K  +A L
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 450 LWKEIKER 457
           + +++ E+
Sbjct: 409 MLEDMMEK 416



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 131/345 (37%), Gaps = 54/345 (15%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           A N R YTTL+  Y   G +    + L ++         PD   YT+ V    +AG +  
Sbjct: 69  ARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHA---GLAPDSYAYTSFVLGYCRAGMLTH 125

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA------------- 316
           A +V   M   G      TY  LL G      + +A  +   M  D+             
Sbjct: 126 ACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVH 185

Query: 317 ---------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
                                  EP++V YN LIDG+    +   AL  F  M     +P
Sbjct: 186 GLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSP 245

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +YT L+     S + + A  +F  M+ +  ++ ++V +  L++G C  G ++ A R+
Sbjct: 246 NVRTYTELIHGLCKSGKVERAMVLFSRMV-EAGLEPNVVTYTALIQGQCNEGHLQCAFRL 304

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M+ NG  PN  T+  L + +    K  EA L    +       K+GV          
Sbjct: 305 LHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSL------VKKGV---------- 348

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           K +E +  +L D   +      A E++  M   G  P+   Y  +
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSL 393


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 202/462 (43%), Gaps = 75/462 (16%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER--------ILEMGI---TL 126
           +QLFD+M E G   D  TY ++I    +A +  L + + E+        +   G+   +L
Sbjct: 97  VQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSL 156

Query: 127 C---MTT-----FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           C   MTT     F  ++ A +   D+ +  +++  +       C+  R  +  ++  E E
Sbjct: 157 CKDGMTTEALDMFSEMIGAGI-LPDVVVYSSLMDGL-------CRFGRLKEALEFFKEME 208

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G                           +  + +   Y +L+ G    G   +    L  
Sbjct: 209 G---------------------------RGISADVYTYNSLIHGLSRAGLWKEVTWFLNL 241

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    D    PD  T+T ++  L K G +  A+Q+L  M   G   + +TYN L+ G C 
Sbjct: 242 MV---DRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCL 298

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             Q++ A +L   +AD   I+ +V SYNILI+G+        A   F EMR +G+ P+ +
Sbjct: 299 VGQLEDATKLFESLADRG-IKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTV 357

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y TL+ A   S + + A K+F EM    +  + +  + +L++G C+ G +EEA  + + 
Sbjct: 358 TYNTLIGALCQSGRVRTAQKLFVEMQTCGQF-LKLSTYCVLLDGLCKNGHLEEAIDLFQS 416

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           +K+    PN+  +  L +G+  A K  EA   WK+     E+ K G          L+PD
Sbjct: 417 IKKTEHKPNIEVFSILLDGMCRAGKLEEA---WKQFD---EISKNG----------LEPD 460

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               + L +         +A++++  MEE G  P+   +  I
Sbjct: 461 TIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVI 502



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 174/407 (42%), Gaps = 65/407 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+++++     G+ K+ L+ F +M   G   DV TYN +I   +RA     + + 
Sbjct: 179 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF 238

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +++ G +    TF  L+      G +  A+ I++ M           +E D+  Y++
Sbjct: 239 LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKG-------KEPDILTYNT 291

Query: 176 ENE-----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   G  +D  ++FE L    I               N   Y  L+ GY  + ++ 
Sbjct: 292 LMNGLCLVGQLEDATKLFESLADRGIK-------------LNVFSYNILINGYCKDQKID 338

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  R+   MR +      P  VTY T++ AL ++G +  A+++  EM   G      TY 
Sbjct: 339 EAFRLFEEMRPK---GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYC 395

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           +LL G C+   +++A +L + +    + +P++  ++IL+DG         A   F+E+  
Sbjct: 396 VLLDGLCKNGHLEEAIDLFQSI-KKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISK 454

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G+ P                                    D +A+N+L+ G C  G++ 
Sbjct: 455 NGLEP------------------------------------DTIAYNILINGLCNKGMLS 478

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA +++ +M+E G  P+  T+  +   +    +  EA+ L +E++ R
Sbjct: 479 EAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNR 525



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 10/272 (3%)

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           FE L             L + F P++   TTL+KG   E  + D V++   M    +   
Sbjct: 52  FESLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMT---EKGL 108

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
             D  TY  +++ L KA     A + L E  +     +  TY +++   C+     +A +
Sbjct: 109 FGDAKTYGILINGLCKARKTGLAIK-LHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALD 167

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +  EM   A I PDVV Y+ L+DG         AL FF EM  RGI+    +Y +L+   
Sbjct: 168 MFSEMI-GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 226

Query: 368 ALSSQPKLANKV--FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
              S+  L  +V  F  ++ D     D   + +L++G C+ G V EA++I+E M   G  
Sbjct: 227 ---SRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKE 283

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER 457
           P++ TY +L NG+ L  +  +A  L++ + +R
Sbjct: 284 PDILTYNTLMNGLCLVGQLEDATKLFESLADR 315



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 18/200 (9%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
            EPD V+   L+ G  + +    A+  F+EM  +G+     +Y  L+     + +  LA 
Sbjct: 73  FEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAI 132

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K+ ++M      K D+  + M+++  C+ G+  EA  +   M   G  P+V  Y SL +G
Sbjct: 133 KLHEKM--KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG 190

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +    +  EAL  +KE++ R      G++AD      +     L+  L+    RA  +++
Sbjct: 191 LCRFGRLKEALEFFKEMEGR------GISAD------VYTYNSLIHGLS----RAGLWKE 234

Query: 498 ALEIVACMEEHGIPPNKTKY 517
               +  M + G  P+   +
Sbjct: 235 VTWFLNLMVDRGFSPDAFTF 254



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/329 (18%), Positives = 128/329 (38%), Gaps = 67/329 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P +  ++T+++ L   G     ++ KLF+ +  R  K            +  +
Sbjct: 277 MHHKGKEPDILTYNTLMNGLCLVGQ--LEDATKLFESLADRGIKL-----------NVFS 323

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N      K  +  +LF++M   G KP  +TYN +I    ++ R      +   + 
Sbjct: 324 YNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQ 383

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G  L ++T+  L+      G LE A  + Q++++                        
Sbjct: 384 TCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHK-------------------- 423

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         PN  +++ L+ G    G++ +  +    + 
Sbjct: 424 ------------------------------PNIEVFSILLDGMCRAGKLEEAWKQFDEIS 453

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   N   PD + Y  +++ L   G +  A ++L +M   G   + IT+N++++   ++ 
Sbjct: 454 K---NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKEN 510

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILI 329
           +I +A +LL EM  +    PD    ++L+
Sbjct: 511 EIHEAIQLLEEMR-NRNFSPDEAVTSMLL 538



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 18/147 (12%)

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V    LV+G      + +A ++ + M E G + +  TYG L NG+  ARK G A+ L 
Sbjct: 76  DAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLH 135

Query: 452 KEIKERCE------------VKKEGVNADS------DLPPPLKPDEELLDALADICVRAA 493
           +++K  C+            + K+G+  ++       +   + PD  +  +L D   R  
Sbjct: 136 EKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFG 195

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKI 520
             ++ALE    ME  GI  +   Y  +
Sbjct: 196 RLKEALEFFKEMEGRGISADVYTYNSL 222


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 204/470 (43%), Gaps = 46/470 (9%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           + +P   +YNA++N     G  K+  ++F +M   G  PDV T+ + IK   R  R H  
Sbjct: 106 NCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSA 165

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGD----LEIAETIVQAMREGRR-DVCKIIRE 167
           + +L  ++  G  L    + ++VA   GF +    +E  E     +R G   DV    + 
Sbjct: 166 LRLLNNMVSQGCQLNAVAYCTVVA---GFYEENYRVEAYELFNDMLRIGIFPDVSTFNKL 222

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           L    ++   +G+  + + +  K             +L K    N   +   ++G   +G
Sbjct: 223 L----HTLCKKGEVQESERLLNK-------------VLKKGMCSNLFTFNIFIQGLCRKG 265

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            +S  + ML ++ R+      PD VTY T++  L K  ++  A + L ++   G+  +  
Sbjct: 266 MLSGAMSMLDSVIRE---GLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGF 322

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYN L+ GYC+   +  A+++L+       + PD  +Y  LI+G    D+   AL  FN 
Sbjct: 323 TYNTLIDGYCKMGMLQNAEKILQGAICKGFV-PDEFTYCSLINGLCQNDEIDRALALFNA 381

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
              +G+ PT I Y  L+K          A ++ +EM  +     DI  +N+++ G C+MG
Sbjct: 382 ALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEM-SENGCSSDIWTYNLVINGLCKMG 440

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            V +A  ++      G+ P+V T+ +L +G              K++K    ++      
Sbjct: 441 CVSDANNLMNDAIAKGYVPDVFTFNTLIDGYC------------KQLKMETTIQILNKMW 488

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              + P +     +L+ L+    +A      +E    M E G  PNK  Y
Sbjct: 489 SHGVTPDVITYNSVLNGLS----KAVKNEDLMETFETMVEKGCVPNKITY 534



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 197/454 (43%), Gaps = 38/454 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P V  ++ ++  L   G+    ES +L + V+K+               +   
Sbjct: 207 MLRIGIFPDVSTFNKLLHTLCKKGE--VQESERLLNKVLKK-----------GMCSNLFT 253

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           +N  +      G     + + D +   G  PDV+TYN +I  LC  ++      + L ++
Sbjct: 254 FNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKY-LHKL 312

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +  G+     T+ +L+  Y   G L+ AE I+Q        +CK     D   Y S   G
Sbjct: 313 VNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGA------ICKGFVP-DEFTYCSLING 365

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              +D+      L N+         L K   P   +Y  L+KG   EG +   ++M+  M
Sbjct: 366 LCQNDEIDRALALFNAA--------LGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEM 417

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               +N    D  TY  V++ L K G +  A  ++ +    G   +  T+N L+ GYC+Q
Sbjct: 418 ---SENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQ 474

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
           L+++   ++L +M     + PDV++YN +++G      +   +  F  M  +G  P KI+
Sbjct: 475 LKMETTIQILNKMWSHG-VTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKIT 533

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L ++   + +   A  + DE+L +  +  D V++  ++ G+   G ++ A ++  RM
Sbjct: 534 YNILTESLCKAGKVNEALDLVDEIL-NKGITPDTVSFATIISGFANNGDLKGAYQLFRRM 592

Query: 420 KEN-GFYPNVATYGSLANGIS--LARKPGEALLL 450
            E        ATY  + N  +  L    GE L L
Sbjct: 593 GEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFL 626



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 108/225 (48%), Gaps = 5/225 (2%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +Y   MK Y  +G+V + V +     R +     P  ++Y  +++ LV++G   +A +V 
Sbjct: 78  VYIGAMKSYGRKGKVQEAVDVF---ERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVF 134

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M  +G+  +  T+ I +K +C+  +   A  LL  M      + + V+Y  ++ GF  
Sbjct: 135 LRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQG-CQLNAVAYCTVVAGFYE 193

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            +    A   FN+M   GI P   ++  L+       + + + ++ +++L+      ++ 
Sbjct: 194 ENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCS-NLF 252

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            +N+ ++G CR G++  A  +++ +   G  P+V TY +L  G+ 
Sbjct: 253 TFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLC 297



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L  G  P   +++T++S  A +GD     + +LF       R+  +   VS +   TA 
Sbjct: 557 ILNKGITPDTVSFATIISGFANNGDLKG--AYQLF-------RRMGEQYKVSHT---TAT 604

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YN ++NA A         +LF +M   G  PD  TY VMI   C   +      F+LE I
Sbjct: 605 YNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMI 664

Query: 120 LEMGITLCMTTFQSLV 135
            E G    +TTF  ++
Sbjct: 665 -EKGFIPSLTTFGRVI 679


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 181/412 (43%), Gaps = 69/412 (16%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           KLFDV+            + D   D  AY  +L++ +  GK ++ + +F++M+E G  P 
Sbjct: 195 KLFDVIP-----------LDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPT 243

Query: 93  VLTYNVMIKLCARASRK-HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           ++TYNVM+ +  +  R  + ++ +L+ +   G+               GF +   +  I 
Sbjct: 244 LVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGL---------------GFDEFTCSTVIS 288

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
              REG  D  K                      E F               L  + +AP
Sbjct: 289 ACGREGLLDEAK----------------------EFF-------------VGLKSQGYAP 313

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
            +  Y  L++ +   G  S+    L  M+  EDN   PD VTY  +V+A V+AG  +   
Sbjct: 314 GTVTYNALLQVFGKAGIYSEA---LSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGA 370

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            ++  MT  G+  N +TY  ++  Y +  Q+DKA  L  +M +     P+V +YN ++  
Sbjct: 371 ALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESG-CAPNVCTYNAILGM 429

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                 S   +    +M+  G AP +I++ T++         K   +VF EM +    + 
Sbjct: 430 LGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEM-KSCGFEP 488

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           D   +N L+    R G   +A++I + M E GF P+VATY +L N  +LAR+
Sbjct: 489 DRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLN--ALARR 538



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 167/373 (44%), Gaps = 24/373 (6%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           V    P+   +N +L+ C N G  K   ++F +M   G +PD  T+N +I    R     
Sbjct: 448 VDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDI 507

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
               + + +LE G T  + T+ +L+ A    GD   AE++++ M+       +    L L
Sbjct: 508 DAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLIL 567

Query: 171 EDYSSEN--EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
             Y+     +G +  + ++++  +                  P+  +  TL+        
Sbjct: 568 NSYAKGGYVKGINRIEKDIYDGHI-----------------FPSWMLLRTLILANFKCRA 610

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           ++   R   A+++       PD V + +++S   +    DRA +++  +   G+  + +T
Sbjct: 611 LAGMERAFQALQKH---GYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVT 667

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN L+  Y +  +  KA+E+LRE+ +    + D++SYN +I GF        AL   +EM
Sbjct: 668 YNSLMDLYARGGECWKAEEILRELQNSGD-KSDLISYNTVIKGFCRQGLMHEALRTLSEM 726

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
            +RGI P  ++Y T +  +A        ++V   M +    + + + + ++V+GYC+   
Sbjct: 727 ISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHD-CRPNELTYKIVVDGYCKAKK 785

Query: 409 VEEAKRIIERMKE 421
            +EA   +  + +
Sbjct: 786 FKEAMDFVSTITD 798



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 178/420 (42%), Gaps = 37/420 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   Y  ++NA     +  K L L+DQM E G  P+V TYN ++ +  + S+   ++ 
Sbjct: 382 KPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMK 441

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR----EGRRDVCKIIRELDL 170
           +L  +   G      T+ ++++     G  +  + + Q M+    E  RD    +     
Sbjct: 442 ILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLIT--- 498

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPS--SEPPLLP--------------------KT 208
              +S   G D D +++++++L     PS  +   LL                     K 
Sbjct: 499 ---ASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKG 555

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P+   Y+ ++  Y   G V    R+    +   D    P  +   T++ A  K  ++ 
Sbjct: 556 FKPSETSYSLILNSYAKGGYVKGINRI---EKDIYDGHIFPSWMLLRTLILANFKCRALA 612

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
              +    + + G   + + +N +L  + ++   D+A E++  +  +  ++PD+V+YN L
Sbjct: 613 GMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMH-LIQECGLQPDLVTYNSL 671

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +D +    +   A     E++  G     ISY T++K F        A +   EM+    
Sbjct: 672 MDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRG- 730

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           ++  IV +N  V GY   G+  E   ++  M ++   PN  TY  + +G   A+K  EA+
Sbjct: 731 IRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAM 790



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 140/346 (40%), Gaps = 53/346 (15%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +P    Y  ++  Y   GR  +  ++LG +          D  T +TV+SA  + G +D
Sbjct: 240 LSPTLVTYNVMLDVYGKMGRSWN--KILGLLDEMRSKGLGFDEFTCSTVISACGREGLLD 297

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A++    +   G     +TYN LL+ + +     +A  +++EM D+    PD V+YN L
Sbjct: 298 EAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDN-NCPPDAVTYNEL 356

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD-- 386
           +  ++            + M   GI P  ++YTT++ A+  ++Q   A  ++D+M     
Sbjct: 357 VAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGC 416

Query: 387 -PRV--------------------------KVDIVA-----WNMLVEGYCRMGLVEEAKR 414
            P V                          KVD  A     WN ++      G+ +  KR
Sbjct: 417 APNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKR 476

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           + + MK  GF P+  T+ +L           +A  ++ E+ E            +   P 
Sbjct: 477 VFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLE------------AGFTPS 524

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +     LL+ALA    R   +R A  ++  M+  G  P++T Y  I
Sbjct: 525 VATYNALLNALA----RRGDWRTAESVIKDMKNKGFKPSETSYSLI 566



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 104/500 (20%), Positives = 190/500 (38%), Gaps = 84/500 (16%)

Query: 52  SDSKPDTAAYNAVLNACANLGKP-KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           S   P    YN +L+    +G+   K L L D+M   G   D  T + +I  C R     
Sbjct: 238 SGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLD 297

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
                   +   G      T+ +L+     FG   I    +  M+E   + C        
Sbjct: 298 EAKEFFVGLKSQGYAPGTVTYNALLQV---FGKAGIYSEALSIMKEMEDNNC-------- 346

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                                   P++  Y  L+  Y+  G   
Sbjct: 347 ---------------------------------------PPDAVTYNELVAAYVRAGFYE 367

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +   ++  M    +N   P+ VTYTT+++A  +A  +D+A  +  +M   G   N  TYN
Sbjct: 368 EGAALIDTMT---ENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYN 424

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF----FN 346
            +L    ++ Q ++  ++L +M  D    P+ +++N ++     +  + G   +    F 
Sbjct: 425 AILGMLGKKSQSEEMMKILCDMKVDG-CAPNRITWNTMLS----MCGNKGMHKYVKRVFQ 479

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM++ G  P + ++ TL+ A         A K++DEML +      +  +N L+    R 
Sbjct: 480 EMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEML-EAGFTPSVATYNALLNALARR 538

Query: 407 GLVEEAKRIIERMKENGFYPNVATY---------GSLANGISLARK---PGEALLLWKEI 454
           G    A+ +I+ MK  GF P+  +Y         G    GI+   K    G     W  +
Sbjct: 539 GDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLL 598

Query: 455 KE------RCEVKKEGVNADSDLPP-PLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           +       +C        A   L     KPD  + +++  +  R     +A EI+  ++E
Sbjct: 599 RTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQE 658

Query: 508 HGIPPNKTKYKKIYVEMHSR 527
            G+ P+   Y  + +++++R
Sbjct: 659 CGLQPDLVTYNSL-MDLYAR 677



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKELLREM 312
           YTT++ +  + G  +RA  +  +M   G+    +TYN++L  Y +  +  +K   LL EM
Sbjct: 212 YTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM 271

Query: 313 ADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
                +  D  + + +I       L+D+   A  FF  ++++G AP  ++Y  L++ F  
Sbjct: 272 RSKG-LGFDEFTCSTVISACGREGLLDE---AKEFFVGLKSQGYAPGTVTYNALLQVFGK 327

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +     A  +  EM  D     D V +N LV  Y R G  EE   +I+ M ENG  PN  
Sbjct: 328 AGIYSEALSIMKEM-EDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAV 386

Query: 430 TYGSLANGISLARKPGEALLLWKEIKER-CEVKKEGVNADSDLPPPLKPDEELLDALADI 488
           TY ++ N    A +  +AL L+ ++KE  C       NA   +       EE++  L D+
Sbjct: 387 TYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDM 446

Query: 489 CV 490
            V
Sbjct: 447 KV 448



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 191/457 (41%), Gaps = 43/457 (9%)

Query: 14  STVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGK 73
           STV+S   A G +G ++  K F V +K               P T  YNA+L      G 
Sbjct: 284 STVIS---ACGREGLLDEAKEFFVGLKS----------QGYAPGTVTYNALLQVFGKAGI 330

Query: 74  PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133
             + L +  +M +    PD +TYN ++    RA        +++ + E GI     T+ +
Sbjct: 331 YSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTT 390

Query: 134 LVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
           ++ AY     ++ A ++   M+E     +VC     L +    S++E       E+ + L
Sbjct: 391 MINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSE-------EMMKIL 443

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
               ++            APN   + T++    N+G      R+   M+        PD 
Sbjct: 444 CDMKVDGC----------APNRITWNTMLSMCGNKGMHKYVKRVFQEMK---SCGFEPDR 490

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
            T+ T+++A  + GS   A ++  EM   G   +  TYN LL    ++     A+ ++++
Sbjct: 491 DTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKD 550

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M +    +P   SY+++++ +       G      ++    I P+ +   TL+ A     
Sbjct: 551 MKNKG-FKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCR 609

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
                 + F + L+    K D+V +N ++  + R  + + A  I+  ++E G  P++ TY
Sbjct: 610 ALAGMERAF-QALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTY 668

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
            SL   + L  + GE    WK  +   E++  G  +D
Sbjct: 669 NSL---MDLYARGGEC---WKAEEILRELQNSGDKSD 699



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 132/349 (37%), Gaps = 101/349 (28%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G+ P V  ++ +++ LA  GD    ES      V+K ++           KP   +
Sbjct: 516 MLEAGFTPSVATYNALLNALARRGDWRTAES------VIKDMKN-------KGFKPSETS 562

Query: 61  YNAVLNACANLGKPKKFLQL-----------------------------------FDQMH 85
           Y+ +LN+ A  G  K   ++                                   F  + 
Sbjct: 563 YSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQ 622

Query: 86  EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           + G KPD++ +N M+ + +R +       ++  I E G+   + T+ SL+  Y   G+  
Sbjct: 623 KHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECW 682

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            AE              +I+REL       +N GD  D       L+             
Sbjct: 683 KAE--------------EILREL-------QNSGDKSD-------LIS------------ 702

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                     Y T++KG+  +G + + +R L  M  +      P  VTY T V      G
Sbjct: 703 ----------YNTVIKGFCRQGLMHEALRTLSEMISR---GIRPCIVTYNTFVGGYAAKG 749

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
                 +VL+ MT+     N +TY I++ GYC+  +  +A + +  + D
Sbjct: 750 MFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMDFVSTITD 798


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 170/382 (44%), Gaps = 30/382 (7%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+L+     G  ++ + +F  M      PD   Y  M+     A R      +LE  +
Sbjct: 145 YTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAM 204

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDLEDYSS 175
             G    +  + +L+  Y   G++E A  + + M   R     R   ++I  L       
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLC------ 258

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +    +F +++   +              PN   YT L++G  NEG +    R+
Sbjct: 259 -KSGKVERAMVLFSRMVEAGLE-------------PNVVTYTALIQGQCNEGHLQCAFRL 304

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M   E N   P+  T++ ++ AL K   ++ A+  L  + + GV  N + Y  L+ G
Sbjct: 305 LHLM---ETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDG 361

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +ID A EL+++M  +  + PD  SY+ LIDG       + A     +M  +GI  
Sbjct: 362 LCKTGKIDAADELMQKMISEGFV-PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQA 420

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           + ++YT ++         +   K+FD+M+    +  DIV + + V  YC  G +E+A+ +
Sbjct: 421 SPVTYTIIIDELVREVGSEGPKKIFDKMIAT-GINPDIVTYTVFVRSYCEEGRMEDAESM 479

Query: 416 IERMKENGFYPNVATYGSLANG 437
           I +M + G +PN+ TY +L  G
Sbjct: 480 IVQMVDRGVFPNLVTYNTLIRG 501



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 172/398 (43%), Gaps = 55/398 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YNA+++   N G+ +  L++F+ M      P+V TY  +I    ++ +    + 
Sbjct: 209 EPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMV 268

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +  R++E G+   + T+ +L+      G L+ A  ++  M                    
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLM-------------------- 308

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            E  G                               PN   ++ L+       +V +   
Sbjct: 309 -ETNG-----------------------------LVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            LG++ ++       + V YT+++  L K G +D A +++ +M   G   +  +Y+ L+ 
Sbjct: 339 FLGSLVKK---GVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLID 395

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+Q ++ +A  +L +M +   I+   V+Y I+ID  +    S G    F++M A GI 
Sbjct: 396 GLCRQKKLSQATLMLEDMMEKG-IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YT  ++++    + + A  +  +M+ D  V  ++V +N L+ GY  +GLV +A  
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMV-DRGVFPNLVTYNTLIRGYANLGLVSQAFS 513

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
             E M   G+ PN  +Y  L   +        ++ +WK
Sbjct: 514 TFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 183/394 (46%), Gaps = 34/394 (8%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL-L 112
             P+   Y  +++     GK ++ + LF +M E G +P+V+TY  +I+   + +  HL  
Sbjct: 243 CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQ--GQCNEGHLQC 300

Query: 113 VFVLERILEM-GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            F L  ++E  G+     TF  L+ A      +E A+  + ++ +    V +++    ++
Sbjct: 301 AFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLID 360

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                  G  D  DE+ +K++                F P++  Y++L+ G   + ++S 
Sbjct: 361 GLC--KTGKIDAADELMQKMISEG-------------FVPDAHSYSSLIDGLCRQKKLSQ 405

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              ML  M  +   AS    VTYT ++  LV+    +  +++  +M   G+  + +TY +
Sbjct: 406 ATLMLEDMMEKGIQASP---VTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTV 462

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
            ++ YC++ +++ A+ ++ +M D   + P++V+YN LI G+  +   + A + F  M  +
Sbjct: 463 FVRSYCEEGRMEDAESMIVQMVDRG-VFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGK 521

Query: 352 GIAPTKISYTTLMKAFALSSQP-------KLAN----KVFDEMLRDPRVKVDIVAWNMLV 400
           G  P + SYT L++     S         K+A+    +V  E + + ++ +    ++  +
Sbjct: 522 GWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFI 581

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
              CR+  +EEAK     M+     P+   Y S+
Sbjct: 582 RCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSI 615



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP++ +Y T++ G    GR   T      +     N   P+ V Y  ++     AG M+ 
Sbjct: 174 APDTHVYATMVHGLCEAGR---TEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEH 230

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V   M       N  TY  L+ G C+  ++++A  L   M + A +EP+VV+Y  LI
Sbjct: 231 ALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE-AGLEPNVVTYTALI 289

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G         A    + M   G+ P   +++ L+ A     + + A ++F   L    V
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEA-QLFLGSLVKKGV 348

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           KV+ V +  L++G C+ G ++ A  ++++M   GF P+  +Y SL +G+   +K  +A L
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 450 LWKEIKER 457
           + +++ E+
Sbjct: 409 MLEDMMEK 416



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 18/261 (6%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TYTT+++A   AG +  A+Q L  +   G+  +   Y   + GYC+   +  A  +   M
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLM 133

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                +     +Y  L+ G +       A+T F  MRA   AP    Y T++     + +
Sbjct: 134 PLRGCLR-TAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGR 192

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            + A  + +E + +   + +IV +N L++GYC  G +E A ++ E M  N   PNV TY 
Sbjct: 193 TEEAEVLLEEAMSN-GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYT 251

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
            L +G+  + K   A++L+  + E                  L+P+     AL       
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVE----------------AGLEPNVVTYTALIQGQCNE 295

Query: 493 AFFRKALEIVACMEEHGIPPN 513
              + A  ++  ME +G+ PN
Sbjct: 296 GHLQCAFRLLHLMETNGLVPN 316



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 131/345 (37%), Gaps = 54/345 (15%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           A N R YTTL+  Y   G +    + L ++         PD   YT+ V    +AG +  
Sbjct: 69  ARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHA---GLAPDSYAYTSFVLGYCRAGMLTH 125

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA------------- 316
           A +V   M   G      TY  LL G      + +A  +   M  D+             
Sbjct: 126 ACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVH 185

Query: 317 ---------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
                                  EP++V YN LIDG+    +   AL  F  M     +P
Sbjct: 186 GLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSP 245

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +YT L+     S + + A  +F  M+ +  ++ ++V +  L++G C  G ++ A R+
Sbjct: 246 NVRTYTELIHGLCKSGKVERAMVLFSRMV-EAGLEPNVVTYTALIQGQCNEGHLQCAFRL 304

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M+ NG  PN  T+  L + +    K  EA L    +       K+GV          
Sbjct: 305 LHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSL------VKKGV---------- 348

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           K +E +  +L D   +      A E++  M   G  P+   Y  +
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSL 393


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 215/476 (45%), Gaps = 43/476 (9%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           KF +  I     PD  A  +++      GK +K  ++ + +   GA PDV+TYNV+I   
Sbjct: 128 KFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGY 187

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV--QAMREGRRDV 161
            ++      + VLER   M +   + T+ +++ +    G L+ A  ++  Q  RE   DV
Sbjct: 188 CKSGEIDKALQVLER---MSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDV 244

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
             I   + +E         +D       KLL           +  K   P+   Y  L+ 
Sbjct: 245 --ITYTILIEATC------NDSGVGQAMKLLDE---------MRKKGCKPDVVTYNVLIN 287

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G   EGR+ + ++ L  M         P+ +T+  ++ ++   G    A ++LA+M R G
Sbjct: 288 GICKEGRLDEAIKFLNNMPLY---GCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG 344

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              + +T+NIL+   C++  + +A ++L +M     + P+ +SYN L+ GF        A
Sbjct: 345 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCM-PNSLSYNPLLHGFCQEKKMDRA 403

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           + +   M +RG  P  ++Y TL+ A     +   A ++ +++       V ++ +N +++
Sbjct: 404 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPV-LITYNTVID 462

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           G  ++G  E A  ++E M+  G  P++ TY +L  G+    K  EA+ ++ ++       
Sbjct: 463 GLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDM------- 515

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            EG++        +KP     +A+     +A    +A++ +A M E G  P K  Y
Sbjct: 516 -EGLS--------IKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATY 562



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 198/468 (42%), Gaps = 76/468 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           M+  G +P V A ++++     SG             + G V  V  ++V++    K  +
Sbjct: 133 MIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGE 192

Query: 48  PDIV------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
            D            PD   YN +L +  + GK K+ +++ D+  +    PDV+TY ++I+
Sbjct: 193 IDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIE 252

Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD- 160
                S     + +L+ + + G    + T+  L+                   +EGR D 
Sbjct: 253 ATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC---------------KEGRLDE 297

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
             K +  + L  Y  +                                  PN   +  ++
Sbjct: 298 AIKFLNNMPL--YGCQ----------------------------------PNVITHNIIL 321

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
           +   + GR  D  R+L  M R+      P  VT+  +++ L +   + RA  VL +M + 
Sbjct: 322 RSMCSTGRWMDAERLLADMLRK---GCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKH 378

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G   N ++YN LL G+CQ+ ++D+A E L  M       PD+V+YN L+        +  
Sbjct: 379 GCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRG-CYPDIVTYNTLLTALCKDGKADA 437

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A+   N++ ++G +P  I+Y T++       + + A ++ +EM R   +K DI+ ++ L+
Sbjct: 438 AVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEM-RRKGLKPDIITYSTLL 496

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            G    G V+EA +I   M+     P+  TY ++  G+  A++   A+
Sbjct: 497 RGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAI 544



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 35/326 (10%)

Query: 193 PNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
           PN +N S       + FA N  +   +  G + EG     ++ L  M  Q D    PD +
Sbjct: 96  PNGVNGSRSF----EEFASNIHLRKLVRNGELEEG-----LKFLERMIYQGD---IPDVI 143

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
             T+++    ++G   +A +++  +   G   + ITYN+L+ GYC+  +IDKA ++L  M
Sbjct: 144 ACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM 203

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
           +    + PDVV+YN ++           A+   +    R   P  I+YT L++A    S 
Sbjct: 204 S----VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSG 259

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A K+ DEM R    K D+V +N+L+ G C+ G ++EA + +  M   G  PNV T+ 
Sbjct: 260 VGQAMKLLDEM-RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHN 318

Query: 433 SLANGI-SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            +   + S  R      LL   +++ C                  P     + L +   R
Sbjct: 319 IILRSMCSTGRWMDAERLLADMLRKGCS-----------------PSVVTFNILINFLCR 361

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKY 517
                +A++++  M +HG  PN   Y
Sbjct: 362 KRLLGRAIDVLEKMPKHGCMPNSLSY 387



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 171/401 (42%), Gaps = 35/401 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R    P V  ++T++  L  SG              +K   +  D  +  +  PD   Y 
Sbjct: 202 RMSVAPDVVTYNTILRSLCDSGK-------------LKEAMEVLDRQMQRECYPDVITYT 248

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            ++ A  N     + ++L D+M + G KPDV+TYNV+I    +  R    +  L  +   
Sbjct: 249 ILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLY 308

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDD 181
           G    + T   ++ +    G    AE ++  M R+G      ++    L ++        
Sbjct: 309 GCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSP--SVVTFNILINFLCR----- 361

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                  ++LL  +I+   + P       PNS  Y  L+ G+  E ++   +  L  M  
Sbjct: 362 -------KRLLGRAIDVLEKMP--KHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 412

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +     +PD VTY T+++AL K G  D A ++L +++  G     ITYN ++ G  +  +
Sbjct: 413 R---GCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 469

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
            + A ELL EM     ++PD+++Y+ L+ G         A+  F++M    I P+ ++Y 
Sbjct: 470 TEYAAELLEEMRRKG-LKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYN 528

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            +M     + Q   A      M+ +   K     + +L+EG
Sbjct: 529 AIMLGLCKAQQTSRAIDFLAYMV-EKGCKPTKATYTILIEG 568



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 111/300 (37%), Gaps = 76/300 (25%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P V  ++ +++ L      G     +  DV+ K  +            P++ +
Sbjct: 340 MLRKGCSPSVVTFNILINFLCRKRLLG-----RAIDVLEKMPKH--------GCMPNSLS 386

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+      K  + ++  + M   G  PD++TYN ++    +  +    V +L ++ 
Sbjct: 387 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLS 446

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
             G +  + T+ +++      G  E A  +++ MR  R+ +     + D+  YS+     
Sbjct: 447 SKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMR--RKGL-----KPDIITYSTLLRGL 499

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG  D+  ++F  +   SI PS+                                   
Sbjct: 500 GCEGKVDEAIKIFHDMEGLSIKPSA----------------------------------- 524

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                           VTY  ++  L KA    RA   LA M   G    + TY IL++G
Sbjct: 525 ----------------VTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEG 568


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 193/423 (45%), Gaps = 32/423 (7%)

Query: 36  DVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG---AKPD 92
           D++++R+ +F          PD  +Y+ +L    N  + ++ L+L   M + G     P+
Sbjct: 149 DILLRRMPEFG-------CTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPN 201

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIV 151
           V+TY  +I    +A        V + +++ G+     T+  L+  Y+  G   E+ + + 
Sbjct: 202 VVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQ 261

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           +    G +  C I   L   DY  +N G   +   +F+ ++   I P             
Sbjct: 262 EMSTHGLQPDCYIYAVL--LDYLCKN-GRCTEARNIFDSVIRKGIKP------------- 305

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N  IY  L+ GY  EG +S+    L  M     N   PDH  +  +  A  K   +D A 
Sbjct: 306 NVTIYGILLHGYATEGSLSEMHSFLDLM---VGNGVSPDHHIFNIMFCAYAKKAMIDEAM 362

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +  +M +  +  N +TY  L+   C+  ++D A     +M D+  + PD+  ++ L+ G
Sbjct: 363 HIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEG-MTPDIFVFSSLVYG 421

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
              +D    A   F E+  +GI    + + TLM       +   A ++ D MLR   V+ 
Sbjct: 422 LCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLR-VGVRP 480

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D++++N LV+G+C  G ++EA ++++ +   G  P+  TY +L +G   AR+  +A  L+
Sbjct: 481 DVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLF 540

Query: 452 KEI 454
           +E+
Sbjct: 541 REM 543



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 119/506 (23%), Positives = 209/506 (41%), Gaps = 81/506 (16%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARA---SRKHLLVFVLERIL-EMGITLCMTTFQS 133
           L+LFD+M        V  +N ++   +RA   S   L+V +  R++ E  I +  ++F  
Sbjct: 36  LKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPSSFTY 95

Query: 134 --LVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
             L+  +   G L+         ++ G R    +I    L+        D+  D  +  +
Sbjct: 96  TILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATD--ILLR 153

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
            +P       E    P  F+     Y+ L+KG+ NE R  + + +L  M    D +  P+
Sbjct: 154 RMP-------EFGCTPDVFS-----YSILLKGFCNEKRAEEALELLSMMADDGDGSHTPN 201

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE--- 307
            VTYTTV+  L KA  +DRA+ V   M   GV  N  TY  L+ GY   L I K KE   
Sbjct: 202 VVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGY---LSIGKWKEVVQ 258

Query: 308 LLREMADDA----------------------------------KIEPDVVSYNILIDGFI 333
           +L+EM+                                      I+P+V  Y IL+ G+ 
Sbjct: 259 MLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYA 318

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                +   +F + M   G++P    +  +  A+A  +    A  +FD+M R  R+  +I
Sbjct: 319 TEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKM-RQQRLSPNI 377

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +  L++  C++G V++A     +M + G  P++  + SL  G+    K  +A  L+ E
Sbjct: 378 VTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFE 437

Query: 454 IKER-------------CEVKKEGVNADSD------LPPPLKPDEELLDALADICVRAAF 494
           + ++             C + +EG   ++       L   ++PD    + L D       
Sbjct: 438 VLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGR 497

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
             +A +++  +   G+ P+K  Y  +
Sbjct: 498 IDEAAKLLDVIVSIGLKPDKVTYNTL 523



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 111/543 (20%), Positives = 221/543 (40%), Gaps = 84/543 (15%)

Query: 6   YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVL 65
           + P+V  ++TV+  L  +              +V R +      I    +P+   Y  ++
Sbjct: 198 HTPNVVTYTTVIDGLCKAQ-------------MVDRAKGVFQHMIDKGVRPNNHTYTCLI 244

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT 125
           +   ++GK K+ +Q+  +M   G +PD   Y V++    +  R      + + ++  GI 
Sbjct: 245 HGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIK 304

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
             +T +  L+  Y   G L    + +  M          I  +    Y+   +   D+  
Sbjct: 305 PNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYA--KKAMIDEAM 362

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM------ 239
            +F+K+    +             +PN   Y  L+      GRV D V     M      
Sbjct: 363 HIFDKMRQQRL-------------SPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMT 409

Query: 240 --------------------RRQE------DNASHPDHVTYTTVVSALVKAGSMDRARQV 273
                               + +E      D     D V + T++  L + G +  A+++
Sbjct: 410 PDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRL 469

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           +  M R+GV  + I+YN L+ G+C   +ID+A +LL ++     ++PD V+YN L+ G+ 
Sbjct: 470 IDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLL-DVIVSIGLKPDKVTYNTLLHGYC 528

Query: 334 ---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
               IDD   A + F EM  +G+ P  ++Y T++     + +   A +++  M+ + R +
Sbjct: 529 KARRIDD---AYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI-NSRTQ 584

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           ++I  +N+++ G C+   V+EA ++   +       ++ T   +   +    +  +A+ L
Sbjct: 585 MNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDL 644

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           +  I                    L PD E    +A+  ++     +  E+ + MEE+G 
Sbjct: 645 FATIS----------------AYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGT 688

Query: 511 PPN 513
            PN
Sbjct: 689 APN 691



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 114/277 (41%), Gaps = 23/277 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD  +YN +++     G+  +  +L D +   G KPD +TYN ++    +A R      
Sbjct: 479 RPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYS 538

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +   +L  G+T  + T+ +++      G    A+ +  +M   R        ++++  Y+
Sbjct: 539 LFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSR-------TQMNIYTYN 591

Query: 175 SENEGDDDDD--DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               G   ++  DE F+       +      L    F  N  I   L+KG    GR  D 
Sbjct: 592 IIINGLCKNNFVDEAFKMF-----HSLCSKDLQLDIFTANIMI-GALLKG----GRKEDA 641

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   +         PD  TY  +   L+K GS++   ++ + M   G   N    N L
Sbjct: 642 MDLFATISAY---GLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNAL 698

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           ++    +  I++A   L ++ D+     +  + ++LI
Sbjct: 699 VRWLLHRGDINRAGAYLSKL-DEKNFSLEASTTSMLI 734


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 207/484 (42%), Gaps = 74/484 (15%)

Query: 20  LAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS---------KPDTAAYNAVLNACAN 70
           LAAS D    +S  +FD ++K     +  D   +           P     N++L+    
Sbjct: 139 LAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLK 198

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMT 129
           L + +    L+ +M     K  V T+N+MI  LC     K    FV   +   G+   + 
Sbjct: 199 LNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFV-GHMETSGVKPNIV 257

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDD 184
           T+ ++V  Y   G +E A+ I+  M+  R+ +     E D   Y S       +G  ++ 
Sbjct: 258 TYNTIVHGYCSSGRVEAADAILTTMK--RQKI-----EPDSFTYGSLISGMCKQGRLEEA 310

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
            ++FE+++   + PS+              IY TL+ G+ N+G +         M ++  
Sbjct: 311 SKIFEEMVQKGLRPSA-------------VIYNTLIDGFCNKGNLDMASAYKDEMLKK-- 355

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P   TY +++ AL      D A  ++ E+   G+  + ITYNIL+ GYC+     K
Sbjct: 356 -GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKK 414

Query: 305 AKELLREM---------------------------ADD-------AKIEPDVVSYNILID 330
           A  L  EM                           ADD         + PDV+ +N LID
Sbjct: 415 AFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALID 474

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     +  GA     +M    + P ++++ T+M+      + + A ++FDEM R   +K
Sbjct: 475 GHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG-IK 533

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D +++N L+ GY R G +++A R+   M + GF P V TY +L  G+   ++   A  L
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEEL 593

Query: 451 WKEI 454
            KE+
Sbjct: 594 LKEM 597



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 183/415 (44%), Gaps = 31/415 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K     +N ++N     GK KK       M   G KP+++TYN ++     + R      
Sbjct: 218 KSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADA 277

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDY 173
           +L  +    I     T+ SL++     G LE A  I + M ++G R    I   L ++ +
Sbjct: 278 ILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL-IDGF 336

Query: 174 SSENEGDDDDDDEVFEKLLPNSINP--SSEPPLLPKTF--------------------AP 211
              N+G+ D      +++L   I+P  S+   L+   F                    +P
Sbjct: 337 C--NKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           ++  Y  L+ GY    R ++  +          +   P   TYT+++  L K   M  A 
Sbjct: 395 DAITYNILINGYC---RCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +  ++T  GV  + I +N L+ G+C    +  A ELL++M D  K+ PD V++N ++ G
Sbjct: 452 DLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDM-DRMKVPPDEVTFNTIMQG 510

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                    A   F+EM+ RGI P  IS+ TL+  ++     K A +V +EML D     
Sbjct: 511 HCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML-DTGFNP 569

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
            ++ +N LV+G C+    + A+ +++ M   G  P+  TY +L  GI+    P E
Sbjct: 570 TVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 152/317 (47%), Gaps = 24/317 (7%)

Query: 213 SRIYT--TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           S +YT   ++     EG++      +G M   E +   P+ VTY T+V     +G ++ A
Sbjct: 219 SSVYTFNIMINVLCKEGKLKKAKDFVGHM---ETSGVKPNIVTYNTIVHGYCSSGRVEAA 275

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L  M R  +  +  TY  L+ G C+Q ++++A ++  EM     + P  V YN LID
Sbjct: 276 DAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG-LRPSAVIYNTLID 334

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           GF    +   A  + +EM  +GI+PT  +Y +L+ A  +  +   A  +  E +++  + 
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE-IQEKGIS 393

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D + +N+L+ GYCR    ++A  + + M  +G  P   TY SL + +S   +  EA  L
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDL 453

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           +K+I        EGV           PD  + +AL D     +  + A E++  M+   +
Sbjct: 454 FKKITS------EGV----------LPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKV 497

Query: 511 PPNKTKYKKIYVEMHSR 527
           PP++  +  I ++ H R
Sbjct: 498 PPDEVTFNTI-MQGHCR 513



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 189/413 (45%), Gaps = 33/413 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P++  ++T+V    +SG    VE+       +KR +           +PD+  
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGR---VEAADAILTTMKRQK----------IEPDSFT 293

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++     G+ ++  ++F++M + G +P  + YN +I          +     + +L
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI+  M+T+ SL+ A       + AE +++ ++E       I   + +  Y      +
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYC--RCAN 411

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 + +++L + I P+              + YT+L+     + R+ +   +    +
Sbjct: 412 AKKAFLLHDEMLASGIKPTK-------------KTYTSLLHVLSKKNRMKEADDLF---K 455

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +       PD + +  ++       ++  A ++L +M R+ VP + +T+N +++G+C++ 
Sbjct: 456 KITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREG 515

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++++A+EL  EM     I+PD +S+N LI G+    D   A    NEM   G  PT ++Y
Sbjct: 516 KVEEARELFDEMKRRG-IKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTY 574

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             L++    + +  LA ++  EM+       D   +  L+EG  ++ + +E K
Sbjct: 575 NALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT-LIEGIAKVNIPDENK 626



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 264 AGSMDRARQVL----AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            G+ +  R++     A   R+G  ++ I ++ L+K  C   + D+A E    M +   + 
Sbjct: 126 GGTTNSIREIFEFLAASRDRLGFKSS-IVFDYLIKSCCDMNRADEAFECFYTMKEKG-VL 183

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P + + N L+  F+ ++ +  A   + EM    I  +  ++  ++       + K A K 
Sbjct: 184 PTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA-KD 242

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F   +    VK +IV +N +V GYC  G VE A  I+  MK     P+  TYGSL +G+ 
Sbjct: 243 FVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMC 302

Query: 440 LARKPGEALLLWKEIKER 457
              +  EA  +++E+ ++
Sbjct: 303 KQGRLEEASKIFEEMVQK 320


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 196/462 (42%), Gaps = 52/462 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVKRVRKFSDPDIV 51
           G +PHV  ++ ++      GD              G + +V+ +  ++    K  + + V
Sbjct: 231 GCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAV 290

Query: 52  SDSKPDTAA---------YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
                + AA         +N V++A    G   K  +   +M E G  PD+ TYN MI  
Sbjct: 291 DQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINF 350

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
             +  R       LE+  E G+     ++  L+ AY   GD   A  ++  + E      
Sbjct: 351 SCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAE------ 404

Query: 163 KIIRELDLEDYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
            I  + DL  Y +        G+ D    V EK++   +              P+++IY 
Sbjct: 405 -IGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGV-------------FPDAQIYN 450

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            LM G    GR      +L  M    D    PD   + T++   ++ G +D A ++   +
Sbjct: 451 VLMSGLCKNGRFPAMKLLLSEML---DRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVI 507

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            R GV    + YN ++KG+C+  ++  A   L +M  +    PD  +Y+ +IDG++   D
Sbjct: 508 IRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKM-KNVHHAPDEYTYSTVIDGYVKQHD 566

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
            + AL  F +M      P  I+YT+L+  F   +    A KVF  M +   +  ++V + 
Sbjct: 567 MSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGM-KSFDLVPNVVTYT 625

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            LV G+ + G  E+A  I E M  NG  PN AT+  L NG++
Sbjct: 626 TLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLT 667



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 179/432 (41%), Gaps = 65/432 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++     G  +   +   ++   G  P V TY  +I    +A     +  +
Sbjct: 234 PHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQL 293

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS- 174
           L  +   G+ + +  F +++ A   +G       +V    E  R + ++    D+  Y+ 
Sbjct: 294 LTEMAARGLNMNVKVFNNVIDAEFKYG-------LVTKAAETMRRMAEMGCGPDITTYNT 346

Query: 175 ----SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
               S   G   + DE  EK        + E  LLP  F+     YT LM  Y  +G   
Sbjct: 347 MINFSCKGGRIKEADEFLEK--------AKERGLLPNKFS-----YTPLMHAYCKQG--- 390

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D V+  G + R  +    PD V+Y   +  +V  G +D A  V  +M   GV  +   YN
Sbjct: 391 DYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYN 450

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           +L+ G C+  +    K LL EM D   ++PDV  +  L+DGFI   +   A+  F  +  
Sbjct: 451 VLMSGLCKNGRFPAMKLLLSEMLD-RNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIR 509

Query: 351 RGIAPTKISYTTLMKAF--------ALSSQPKLAN------------------------- 377
           +G+ P  + Y  ++K F        ALS   K+ N                         
Sbjct: 510 KGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSS 569

Query: 378 --KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
             K+F +M++  + K +++ +  L+ G+C+   +  A+++   MK     PNV TY +L 
Sbjct: 570 ALKMFGQMMKH-KFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLV 628

Query: 436 NGISLARKPGEA 447
            G   A KP +A
Sbjct: 629 GGFFKAGKPEKA 640



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 116/519 (22%), Positives = 214/519 (41%), Gaps = 56/519 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           P  +A+S ++    A G+ G ++ +++LF  V +          + +  P   A N++LN
Sbjct: 124 PTREAFSALI---LAYGESGSLDRALQLFHTVRE----------MHNCLPTVVASNSLLN 170

Query: 67  ACANLGKPKKFLQLFDQMHEF----GAKPDVLTYNVMIK-LCARASRKHLLVFVLERILE 121
                GK    LQL+D+M +     GA  D  T ++++K LC     +     V +R   
Sbjct: 171 GLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDR-WG 229

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G    +  +  ++  Y   GDL+ A   ++ ++   + V   +             G+ 
Sbjct: 230 KGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELK--MKGVLPTVETYGALINGFCKAGEF 287

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           +  D++  ++    +N              N +++  ++      G V+        MRR
Sbjct: 288 EAVDQLLTEMAARGLNM-------------NVKVFNNVIDAEFKYGLVTKAAE---TMRR 331

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             +    PD  TY T+++   K G +  A + L +    G+  N+ +Y  L+  YC+Q  
Sbjct: 332 MAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGD 391

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
             KA  +L  +A+  + +PD+VSY   I G ++  +   AL    +M  +G+ P    Y 
Sbjct: 392 YVKAAGMLFRIAEIGE-KPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYN 450

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            LM     + +      +  EML D  V+ D+  +  L++G+ R G ++EA +I + +  
Sbjct: 451 VLMSGLCKNGRFPAMKLLLSEML-DRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIR 509

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  P +  Y ++  G     K  +AL         C  K + V+          PDE  
Sbjct: 510 KGVDPGIVGYNAMIKGFCKFGKMTDAL--------SCLNKMKNVHH--------APDEYT 553

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              + D  V+      AL++   M +H   PN   Y  +
Sbjct: 554 YSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSL 592



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 183/469 (39%), Gaps = 52/469 (11%)

Query: 78  LQLFD--QMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           L+ FD      F    D + ++ ++KL A       +  VLE +    +      F +L+
Sbjct: 74  LKFFDWASTRPFSCSLDGVAHSSLLKLLASFRVFPEIELVLENMKAQHLKPTREAFSALI 133

Query: 136 AAYVGFGDLEIAETIVQAMRE---------------------GRRDVCKIIRELDLEDYS 174
            AY   G L+ A  +   +RE                     G+ DV   + +  L+   
Sbjct: 134 LAYGESGSLDRALQLFHTVREMHNCLPTVVASNSLLNGLVKSGKVDVALQLYDKMLQTDD 193

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLP----KTFAPNSRIYTTLMKGYMNEGRVS 230
                 D+    +  K L N         L+     K   P+   Y  ++ GY  +G + 
Sbjct: 194 GTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQ 253

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              R L  ++ +      P   TY  +++   KAG  +   Q+L EM   G+  N   +N
Sbjct: 254 CATRTLKELKMK---GVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFN 310

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++    +   + KA E +R MA +    PD+ +YN +I+          A  F  + + 
Sbjct: 311 NVIDAEFKYGLVTKAAETMRRMA-EMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKE 369

Query: 351 RGIAPTKISYTTLMKAFALSSQ-PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           RG+ P K SYT LM A+       K A  +F   + +   K D+V++   + G    G +
Sbjct: 370 RGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFR--IAEIGEKPDLVSYGAFIHGVVVHGEI 427

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISL-ARKPGEALLLWKEIKERCEVKKEGVNAD 468
           + A  + E+M E G +P+   Y  L +G+    R P   LLL  E+ +R           
Sbjct: 428 DVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLL-SEMLDR----------- 475

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                 ++PD  +   L D  +R     +A++I   +   G+ P    Y
Sbjct: 476 -----NVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGY 519



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 149/382 (39%), Gaps = 46/382 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD  +Y A ++     G+    L + ++M E G  PD   YNV++    +  R   +  
Sbjct: 408 KPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKL 467

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGR-----------RDVC 162
           +L  +L+  +   +  F +L+  ++  G+L+ A  I + + R+G            +  C
Sbjct: 468 LLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFC 527

Query: 163 KIIRELD-LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP-------LLPKTFAPNSR 214
           K  +  D L   +         D+  +  ++   +              ++   F PN  
Sbjct: 528 KFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVI 587

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            YT+L+ G+  +   +D +R     R  +     P+ VTYTT+V    KAG  ++A  + 
Sbjct: 588 TYTSLINGFCKK---ADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIF 644

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M   G P N  T++ L+ G    L       +L E  D  + E  ++           
Sbjct: 645 ELMLMNGCPPNDATFHYLING----LTNTATSPVLIEEKDSMENERSLI----------- 689

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                  L FF  M + G      +Y +++           A  +  +ML    + +D V
Sbjct: 690 -------LDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMVDTAQLLLTKMLTKGFL-IDSV 741

Query: 395 AWNMLVEGYCRMGLVEEAKRII 416
            +  ++ G C  G  +E + II
Sbjct: 742 CFTAMLHGLCHKGKSKEWRNII 763


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 170/383 (44%), Gaps = 30/383 (7%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y A+L+     G  ++ + +F  M      PD   Y  M+     A R      +LE  
Sbjct: 144 TYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDLEDYS 174
           +  G    +  + +L+  Y   G++E A  + + M   R     R   ++I  L      
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLC----- 258

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  +    +F +++   +              PN   YT L++G  NEG +    R
Sbjct: 259 --KSGKVERAMVLFSRMVEAGLE-------------PNVVTYTALIQGQCNEGHLQCAFR 303

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M   E N   P+  T++ ++ AL K   ++ A+  L  + + GV  N + Y  L+ 
Sbjct: 304 LLHLM---ETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLID 360

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+  +ID A EL+++M  +  + PD  SY+ LIDG       + A     +M  +GI 
Sbjct: 361 GLCKTGKIDAADELMQKMISEGFV-PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQ 419

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            + ++YT ++         +   K+FD+M+    +  DIV + + V  YC  G +E+A+ 
Sbjct: 420 ASPVTYTIIIDELVREVGSEGPKKIFDKMIATG-INPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 415 IIERMKENGFYPNVATYGSLANG 437
           +I +M + G +PN+ TY +L  G
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRG 501



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 108/503 (21%), Positives = 206/503 (40%), Gaps = 98/503 (19%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YNA+++   N G+ +  L++F+ M      P+V TY  +I    ++ +    + 
Sbjct: 209 EPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMV 268

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +  R++E G+   + T+ +L+      G L+ A  ++  M                    
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLM-------------------- 308

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            E  G                               PN   ++ L+       +V +   
Sbjct: 309 -ETNG-----------------------------LVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            LG++ ++       + V YT+++  L K G +D A +++ +M   G   +  +Y+ L+ 
Sbjct: 339 FLGSLVKK---GVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLID 395

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+Q ++ +A  +L +M +   I+   V+Y I+ID  +    S G    F++M A GI 
Sbjct: 396 GLCRQKKLSQATLMLEDMMEKG-IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YT  ++++    + + A  +  +M+ D  V  ++V +N L+ GY  +GLV +A  
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMV-DRGVFPNLVTYNTLIRGYANLGLVSQAFS 513

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK------------EIKER----- 457
             E M   G+ PN  +Y  L   +        ++ +WK            +I ER     
Sbjct: 514 TFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLA 573

Query: 458 -----------CEVKK--------EGV-NADSDLPPPLKPDEELLDALADICVRAAFFRK 497
                      C V +         G+ NA+      L P E++  ++ D C R      
Sbjct: 574 ADIYSCFIRCLCRVDRLEEAKHFFMGMQNAN------LTPSEDVYTSIIDCCCRLKILTD 627

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           AL ++  M + G  P+   Y+ I
Sbjct: 628 ALTLLDSMTKSGYLPHLESYRII 650



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP++ +Y T++ G    GR   T      +     N   P+ V Y  ++     AG M+ 
Sbjct: 174 APDTHVYATMVHGLCEAGR---TEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEH 230

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V   M       N  TY  L+ G C+  ++++A  L   M + A +EP+VV+Y  LI
Sbjct: 231 ALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE-AGLEPNVVTYTALI 289

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G         A    + M   G+ P   +++ L+ A     + + A ++F   L    V
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEA-QLFLGSLVKKGV 348

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           KV+ V +  L++G C+ G ++ A  ++++M   GF P+  +Y SL +G+   +K  +A L
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 450 LWKEIKER 457
           + +++ E+
Sbjct: 409 MLEDMMEK 416



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/488 (21%), Positives = 191/488 (39%), Gaps = 87/488 (17%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V+ ++ ++  L  SG              V+R        + +  +P+   Y A++  
Sbjct: 245 PNVRTYTELIHGLCKSGK-------------VERAMVLFSRMVEAGLEPNVVTYTALIQG 291

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERILEMGITL 126
             N G  +   +L   M   G  P+  T++V+I  LC R   +   +F L  +++ G+ +
Sbjct: 292 QCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLF-LGSLVKKGVKV 350

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAM-REGR-----------RDVCKIIR----ELDL 170
               + SL+      G ++ A+ ++Q M  EG              +C+  +     L L
Sbjct: 351 NEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLML 410

Query: 171 EDYSSEN-----------------EGDDDDDDEVFEKLLPNSINP--------------- 198
           ED   +                  E   +   ++F+K++   INP               
Sbjct: 411 EDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEE 470

Query: 199 -------SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
                  S    ++ +   PN   Y TL++GY N G VS        M  +      P+ 
Sbjct: 471 GRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGK---GWKPNE 527

Query: 252 VTYTTVVSALVKAGSMDRARQV--LAEMTRIGVPANRIT----------YNILLKGYCQQ 299
            +YT ++  +VK  S D +  +  +A+M  + V    IT          Y+  ++  C+ 
Sbjct: 528 DSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRV 587

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++++AK     M  +A + P    Y  +ID    +     ALT  + M   G  P   S
Sbjct: 588 DRLEEAKHFFMGM-QNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLES 646

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  ++ +       + A +VF ++L       D + W +L+ G  + G V E   ++  M
Sbjct: 647 YRIIISSLCEGGNFRTAKEVFGDLLLKES-NYDEIVWKILIYGLLQKGSVAEFSSLLSVM 705

Query: 420 KENGFYPN 427
           KE+G+ P+
Sbjct: 706 KEHGYQPS 713



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 131/345 (37%), Gaps = 54/345 (15%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           A N R YTTL+  Y   G +    + L ++         PD   YT+ V    +AG +  
Sbjct: 69  ARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHA---GLAPDSYAYTSFVLGYCRAGMLTH 125

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA------------- 316
           A +V   M   G      TY  LL G      + +A  +   M  D+             
Sbjct: 126 ACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVH 185

Query: 317 ---------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
                                  EP++V YN LIDG+    +   AL  F  M     +P
Sbjct: 186 GLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSP 245

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +YT L+     S + + A  +F  M+ +  ++ ++V +  L++G C  G ++ A R+
Sbjct: 246 NVRTYTELIHGLCKSGKVERAMVLFSRMV-EAGLEPNVVTYTALIQGQCNEGHLQCAFRL 304

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M+ NG  PN  T+  L + +    K  EA L    +       K+GV          
Sbjct: 305 LHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSL------VKKGV---------- 348

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           K +E +  +L D   +      A E++  M   G  P+   Y  +
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSL 393


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 213/453 (47%), Gaps = 37/453 (8%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++N     GKP +   +FD + E G +P ++TY  ++    +      +  ++ ++ E G
Sbjct: 64  LMNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENG 123

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEGDDD 182
           +      + +++ A+   G+++ A  I Q M++ G +        L ++ Y     G+  
Sbjct: 124 MKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTL-IKGY-----GNAG 177

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
             +E  + L   S++ S           PN R Y  L++ + ++  + +   +L  M   
Sbjct: 178 KPEEGLKMLHLMSLDGS---------VKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVA- 227

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
             +   PD VTY  +  A  + G   RA  ++ EM    V  N  T  I++ GYC++  +
Sbjct: 228 --SGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNM 285

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            +A   +  M  +  + P++V +N LI GF+ I D+ G       M   G+ P  I+++T
Sbjct: 286 IEALRFVYRM-KELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFST 344

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           +M A++ +       ++F++M +   ++ DI A+++L +GY R G  E A+ ++  M ++
Sbjct: 345 IMNAWSSAGLMDKCQEIFNDMAK-AGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKS 403

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G  PNV    ++ +G   A K   A ++++++   CE+          + P LK  E L+
Sbjct: 404 GVRPNVVICTTIISGWCSAGKMENAKMVYEKM---CEI---------GISPNLKTFETLI 451

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
              A+    A    KA E++  MEE G+ P K+
Sbjct: 452 WGYAE----ARQPGKAEELLQLMEEKGVFPEKS 480



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/466 (21%), Positives = 208/466 (44%), Gaps = 53/466 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+V+ L           +K F+ +   + K  +  +    KPD+  
Sbjct: 84  LVEDGHRPTLITYTTLVAALT---------KLKHFESIFLLISKVEENGM----KPDSIL 130

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI- 119
           YNA++NA +  G  K+ +++F +M + G KP   T+N +IK    A +    + +L  + 
Sbjct: 131 YNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMS 190

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+  +     T+  LV A+    ++E A  ++  M         +   +    Y+ + E 
Sbjct: 191 LDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGET 250

Query: 180 DDDDD---DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
              +D   +  +EK+                  APN R    ++ GY  EG + + +R +
Sbjct: 251 LRAEDLILEMQYEKV------------------APNERTCGIIVNGYCKEGNMIEALRFV 292

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
               R ++   HP+ V + +++   +     D   + L  M   GV  + IT++ ++  +
Sbjct: 293 ---YRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAW 349

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                +DK +E+  +MA  A IEPD+ +++IL  G++   ++  A +    M   G+ P 
Sbjct: 350 SSAGLMDKCQEIFNDMA-KAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPN 408

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +  TT++  +  + + + A  V+++M  +  +  ++  +  L+ GY       +A+ ++
Sbjct: 409 VVICTTIISGWCSAGKMENAKMVYEKMC-EIGISPNLKTFETLIWGYAEARQPGKAEELL 467

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
           + M+E G +P  +T   +A+              W+ I   CE K+
Sbjct: 468 QLMEEKGVFPEKSTIQLVADA-------------WRNIGLLCEAKR 500



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 17/259 (6%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           T +++ L+  G    A  +   +   G     ITY  L+     +L+  ++  LL    +
Sbjct: 62  TKLMNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAAL-TKLKHFESIFLLISKVE 120

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +  ++PD + YN +I+ F    +   A+  F +M+  G  PT  ++ TL+K +  + +P+
Sbjct: 121 ENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPE 180

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
              K+   M  D  VK +   +N+LV  +C    +EEA  ++ +M  +G  P+V TY  L
Sbjct: 181 EGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNIL 240

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
           A   +   + GE L     I    E++ E V           P+E     + +   +   
Sbjct: 241 ARAYA---QKGETLRAEDLI---LEMQYEKV----------APNERTCGIIVNGYCKEGN 284

Query: 495 FRKALEIVACMEEHGIPPN 513
             +AL  V  M+E G+ PN
Sbjct: 285 MIEALRFVYRMKELGVHPN 303


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 177/387 (45%), Gaps = 10/387 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ V+    +  K +K   LF +M   G  PDV TY ++I    +A       ++
Sbjct: 221 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 280

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +  +G +  + T+ +L+ AY+    +  A  I   M +       +     ++    
Sbjct: 281 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC- 339

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSE---PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              G+     EV+ KL+  S +  S+   P     T APN   Y  L+ G     +V   
Sbjct: 340 -KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHA 398

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L AM     +   P+H+ Y  ++    KAG +D A++V  +MT+ G   +  TY  L
Sbjct: 399 HELLDAML---SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSL 455

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +    +  ++D A ++L +M  D+   P+VV+Y  +IDG   I +S  AL   + M  +G
Sbjct: 456 IDRMFKDGRLDLAMKVLSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 514

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            +P  ++YT L+     + +  L+  +F +M R      + V + +L+   C  GL+++A
Sbjct: 515 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG-CSPNYVTYRVLINHLCAAGLLDKA 573

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + ++  MK+  +   +  Y     G S
Sbjct: 574 RLLLGEMKQTYWPKYLQGYRCAIQGFS 600



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 184/442 (41%), Gaps = 83/442 (18%)

Query: 44  KFSDPDIVSDSKP---DTAAYNAVLN---------ACANLGKPKKFLQLFDQMHEFGAKP 91
           K   PD++  ++    +  A N VLN             +GK  K  QL  +M   G  P
Sbjct: 162 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 221

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           D  TY+ +I     A++      + + +  +G+T  + T+  L+ ++   G +E A+ + 
Sbjct: 222 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 281

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           + MR                                       S+  S           P
Sbjct: 282 EEMR---------------------------------------SVGCS-----------P 291

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
               YT L+  Y+   +V     +     R  D    P+ VTY  +V  L KAG++ +A 
Sbjct: 292 TVVTYTALIHAYLKAKQVPQANDIF---HRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 348

Query: 272 QVLAEMT----------------RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           +V A++                 R  +  N +TY  L+ G C+  ++D A ELL  M   
Sbjct: 349 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 408

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
              EP+ + Y+ LIDGF        A   F +M   G  P+  +YT+L+       +  L
Sbjct: 409 G-CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 467

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A KV  +ML+D     ++V +  +++G CR+G  E+A +++  M+E G  PNV TY +L 
Sbjct: 468 AMKVLSQMLKD-SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 526

Query: 436 NGISLARKPGEALLLWKEIKER 457
           +G+  A K   +L L+ ++  +
Sbjct: 527 DGLGKAGKIDLSLDLFTQMSRK 548



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 189/476 (39%), Gaps = 78/476 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRV--RKFSDPDIVSDSK--- 55
           M+ +G  P+   +  +V  L  +G+       K F+V  K +     +D D     +   
Sbjct: 319 MVDAGCRPNDVTYGALVDGLCKAGNIS-----KAFEVYAKLIGTSDSADSDFYFPCEDRH 373

Query: 56  ---PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
              P+   Y A+++      K     +L D M   G +P+ + Y+ +I    +A +    
Sbjct: 374 TLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 433

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             V  ++ + G    + T+ SL               I +  ++GR D+           
Sbjct: 434 QEVFLQMTKCGYLPSVHTYTSL---------------IDRMFKDGRLDLAM--------- 469

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                        +V  ++L +S  P             N   YT ++ G    G     
Sbjct: 470 -------------KVLSQMLKDSCTP-------------NVVTYTAMIDGLCRIGESEKA 503

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +++L  M   E+    P+ VTYT ++  L KAG +D +  +  +M+R G   N +TY +L
Sbjct: 504 LKLLSLM---EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 560

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVV-SYNILIDGFILIDDSAGALTFFNEMRAR 351
           +   C    +DKA+ LL EM       P  +  Y   I GF        +L    EM + 
Sbjct: 561 INHLCAAGLLDKARLLLGEMKQ--TYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESY 616

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP-RVKVDIVAWNMLVEGYCRMGLVE 410
           G  P    Y  L+  F+ + + ++A ++  EM+  P  VK D   +  L++  C    VE
Sbjct: 617 GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVE 676

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           EA R+   M   GF P ++ +  L  G+   +K  EAL L   I        EGVN
Sbjct: 677 EAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICH------EGVN 726



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 130/296 (43%), Gaps = 38/296 (12%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           + V        L   G  D+A Q++ EM R G   +  TY+ ++   C   +++KA  L 
Sbjct: 187 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 246

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           +EM     + PDV +Y ILID F        A   F EMR+ G +PT ++YT L+ A+  
Sbjct: 247 QEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLK 305

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM------KENG 423
           + Q   AN +F  M+ D   + + V +  LV+G C+ G + +A  +  ++       ++ 
Sbjct: 306 AKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 364

Query: 424 FY----------PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           FY          PNV TYG+L +G+  A K   A  L                 D+ L  
Sbjct: 365 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL----------------DAMLSS 408

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMF 529
             +P+  + DAL D   +A     A E+   M + G  P+       Y  +  RMF
Sbjct: 409 GCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS----VHTYTSLIDRMF 460



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 146/333 (43%), Gaps = 37/333 (11%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P++  Y+ ++    +  +V     +   M+        PD  TYT ++ +  K
Sbjct: 214 MMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMV---GVTPDVYTYTILIDSFCK 270

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +++A+ +  EM  +G     +TY  L+  Y +  Q+ +A ++   M D A   P+ V
Sbjct: 271 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD-AGCRPNDV 329

Query: 324 SYNILIDGF----------------ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +Y  L+DG                 I   DSA +  +F       +AP  ++Y  L+   
Sbjct: 330 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 389

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + +   A+++ D ML     + + + ++ L++G+C+ G ++ A+ +  +M + G+ P+
Sbjct: 390 CKAHKVDHAHELLDAMLSSG-CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 448

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY SL   I    K G   L  K + +              L     P+     A+ D
Sbjct: 449 VHTYTSL---IDRMFKDGRLDLAMKVLSQM-------------LKDSCTPNVVTYTAMID 492

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R     KAL++++ MEE G  PN   Y  +
Sbjct: 493 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 525



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 139/354 (39%), Gaps = 58/354 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y TL+ G++ + ++    R++  M  +  N   P+   + ++V +         A
Sbjct: 75  PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCN---PNPSLFNSLVHSYCNEKDYAYA 131

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQI---------------------------- 302
            ++L  MT  G P   + YNI +   C Q ++                            
Sbjct: 132 YKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNV 191

Query: 303 -------------DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
                        DKA +L++EM     + PD  +Y+ +I           A   F EM+
Sbjct: 192 ANFARCLCGVGKFDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVEKAFLLFQEMK 250

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G+ P   +YT L+ +F  +   + A  +F+EM R       +V +  L+  Y +   V
Sbjct: 251 MVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQV 309

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            +A  I  RM + G  PN  TYG+L +G+  A    +A  ++ ++    +      +ADS
Sbjct: 310 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSD------SADS 363

Query: 470 DLPPP------LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           D   P      L P+     AL D   +A     A E++  M   G  PN   Y
Sbjct: 364 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVY 417



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 17/245 (6%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M+  G   +R T        C++ +   A +++    +D K+  D V    +I G +   
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIER--EDFKL--DTVLCTHMISGLMEAS 56

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A++F + MR     P  ++Y TL+  F    Q     ++ + M+ +     +   +
Sbjct: 57  YFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG-CNPNPSLF 115

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK-PGEALLLWKEIK 455
           N LV  YC       A +++ RM   G  P    Y      I    K P   LL   E  
Sbjct: 116 NSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAE-- 173

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
              ++  E + A+  L      ++  +   A        F KA +++  M   G  P+ +
Sbjct: 174 ---KIYGEMLAANCVL------NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTS 224

Query: 516 KYKKI 520
            Y K+
Sbjct: 225 TYSKV 229


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 201/486 (41%), Gaps = 79/486 (16%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           F V+ K ++    P IV+        +  ++N    +GK  + ++LFD M   G +PD  
Sbjct: 30  FSVLAKGIKLGLQPTIVT--------FTTLINGLGKVGKFAQAVELFDDMVARGCQPDDY 81

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           TY  +I    +     L   + +++ E G  L + T+ +L+                   
Sbjct: 82  TYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLI------------------- 122

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
                 +CK         Y   NE  D     +F  +    I+P+         F     
Sbjct: 123 ----HSLCK---------YRRVNEALD-----IFSYMKAKDISPT--------IFT---- 152

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            YT+L++G  N  R  +   +L  M         P+ VT+  +V    K G +  A  VL
Sbjct: 153 -YTSLIQGLCNFSRWKEASALLNEMTSLN---IMPNVVTFNVLVDTFCKEGKVLAAEGVL 208

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             MT +GV  + +TYN L+ GY    ++ +A++L   M      +PDV SY+ILI+G+  
Sbjct: 209 KTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKG-CKPDVFSYSILINGYCK 267

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 A   FNEM  +G  P  +SY TL+       + + A  +F  M  +  +  ++ 
Sbjct: 268 AKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLP-NLY 326

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + +L++G+C+ G + +A R+   M+     PN+  Y  L N +  +    +A  L+ E+
Sbjct: 327 TYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSEL 386

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
                               L+P+ ++   + +   +     +ALE    ME+ G PP++
Sbjct: 387 ----------------FVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDE 430

Query: 515 TKYKKI 520
             Y  I
Sbjct: 431 FSYNVI 436



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/504 (21%), Positives = 195/504 (38%), Gaps = 109/504 (21%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           ++ G  P +  ++T+++ L   G     ++V+LFD +V R             +PD   Y
Sbjct: 37  IKLGLQPTIVTFTTLINGLGKVGKFA--QAVELFDDMVAR-----------GCQPDDYTY 83

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAK------------------------------- 90
             ++N    +G+      LF +M E G +                               
Sbjct: 84  TTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKA 143

Query: 91  ----PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
               P + TY  +I+     SR      +L  +  + I   + TF  LV  +   G +  
Sbjct: 144 KDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLA 203

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
           AE +++ M E                                            EP ++ 
Sbjct: 204 AEGVLKTMTE-----------------------------------------MGVEPDVVT 222

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
                    Y +LM GY     V +  ++   M  +      PD  +Y+ +++   KA  
Sbjct: 223 ---------YNSLMYGYSMWTEVVEARKLFDVMITK---GCKPDVFSYSILINGYCKAKR 270

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A+Q+  EM   G   N ++YN L+ G CQ  ++ +A++L + M  +  + P++ +Y 
Sbjct: 271 IDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNL-PNLYTYA 329

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-- 384
           IL+DGF        A   F  M++  + P  + Y  L+ A   S   K A ++F E+   
Sbjct: 330 ILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVI 389

Query: 385 -RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
              P V++    +  ++ G C+ GL++EA      M+++G  P+  +Y  +  G    + 
Sbjct: 390 GLQPNVQI----YTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKD 445

Query: 444 PGEALLLWKEIKERCEVKKEGVNA 467
              A+ L  E+++R  +   G  A
Sbjct: 446 ESRAVHLIGEMRDRGFITDAGTTA 469



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 18/244 (7%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  N  T NIL+  +CQ  ++D    +L +      ++P +V++  LI+G   + 
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAK-GIKLGLQPTIVTFTTLINGLGKVG 59

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
             A A+  F++M ARG  P   +YTT++       +  LA  +F +M  +   ++++V +
Sbjct: 60  KFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKM-EEAGCQLNVVTY 118

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + L+   C+   V EA  I   MK     P + TY SL  G+    +  EA  L  E+  
Sbjct: 119 STLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTS 178

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
                             + P+    + L D   +      A  ++  M E G+ P+   
Sbjct: 179 L----------------NIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVT 222

Query: 517 YKKI 520
           Y  +
Sbjct: 223 YNSL 226



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 130/307 (42%), Gaps = 53/307 (17%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+  T   +++   +   +D    VLA+  ++G+    +T+  L+ G  +  +  +A EL
Sbjct: 8   PNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVEL 67

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSA----------------------------- 339
             +M      +PD  +Y  +I+G   I ++A                             
Sbjct: 68  FDDMVARG-CQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLC 126

Query: 340 ------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  AL  F+ M+A+ I+PT  +YT+L++     S+ K A+ + +EM     +  ++
Sbjct: 127 KYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEM-TSLNIMPNV 185

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N+LV+ +C+ G V  A+ +++ M E G  P+V TY SL  G S          +W E
Sbjct: 186 VTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYS----------MWTE 235

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           + E  ++       D  +    KPD      L +   +A    +A ++   M   G  PN
Sbjct: 236 VVEARKL------FDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPN 289

Query: 514 KTKYKKI 520
              Y  +
Sbjct: 290 NVSYNTL 296


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 182/387 (47%), Gaps = 22/387 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLV 113
           +P+   YN V+    + G+ +  L +  +M E G   P+  TY  +I    +  R    V
Sbjct: 182 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 241

Query: 114 FVLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            V + +L  G +      + +L+  Y   G L+ A      M E  R V   +   +L  
Sbjct: 242 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVE--RGVAMTVATYNLLV 299

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           ++   +G   +  E+ E++               K  A +   Y  L+ G+  EG V   
Sbjct: 300 HALFMDGRGTEAYELVEEMGG-------------KGLALDVFTYNILINGHCKEGNVKKA 346

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M R+   A+    VTYT+++ AL K G +    ++  E  R G+  + + YN L
Sbjct: 347 LEIFENMSRRGVRATV---VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 403

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +     ID+A E++ EM +  +I PD V+YN L+ G  L+     A    +EM  RG
Sbjct: 404 INSHSTSGNIDRAFEIMGEM-EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 462

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P  ++Y TL+  +++    K A ++ +EM+ +      ++ +N L++G C+ G  ++A
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDA 521

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + +++ M ENG  P+ +TY SL  G++
Sbjct: 522 ENMVKEMVENGITPDDSTYISLIEGLT 548



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 163/390 (41%), Gaps = 89/390 (22%)

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P+    LL +   PN+  Y T++ G+ + GRV   + ++  MR  E     P+  TY TV
Sbjct: 170 PARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMR--ERGGIAPNQYTYGTV 227

Query: 258 VSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQID------------- 303
           +S   K G +D A +V  EM   G V    + YN L+ GYC Q ++D             
Sbjct: 228 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERG 287

Query: 304 ----------------------KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
                                 +A EL+ EM     +  DV +YNILI+G     +   A
Sbjct: 288 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG-LALDVFTYNILINGHCKEGNVKKA 346

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---------------- 385
           L  F  M  RG+  T ++YT+L+ A +   Q +  +K+FDE +R                
Sbjct: 347 LEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 406

Query: 386 ------------------DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                               R+  D V +N L+ G C +G V+EA+++I+ M + G  P+
Sbjct: 407 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPD 466

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + TY +L +G S+     +AL      + R E+  +G N          P     +AL  
Sbjct: 467 LVTYNTLISGYSMKGDVKDAL------RIRNEMMNKGFN----------PTLLTYNALIQ 510

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              +      A  +V  M E+GI P+ + Y
Sbjct: 511 GLCKNGQGDDAENMVKEMVENGITPDDSTY 540



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 144/306 (47%), Gaps = 25/306 (8%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  +++   + G+ +  + +L  M R       P+ VTY TV++     G +  A  ++ 
Sbjct: 157 FNIMLRHLCSAGKPARALELLRQMPR-------PNAVTYNTVIAGFCSRGRVQAALDIMR 209

Query: 276 EM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
           EM  R G+  N+ TY  ++ G+C+  ++D+A ++  EM    +++P+ V YN LI G+  
Sbjct: 210 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 AL + + M  RG+A T  +Y  L+ A  +  +   A ++ +EM     + +D+ 
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM-GGKGLALDVF 328

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +N+L+ G+C+ G V++A  I E M   G    V TY SL   +S   +  E   L+ E 
Sbjct: 329 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 388

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
             R                 ++PD  L +AL +    +    +A EI+  ME+  I P+ 
Sbjct: 389 VRRG----------------IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 432

Query: 515 TKYKKI 520
             Y  +
Sbjct: 433 VTYNTL 438



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 31/365 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P+   + TV+S     G     E+VK+FD ++ +           + KP+   YN
Sbjct: 214 RGGIAPNQYTYGTVISGWCKVGRVD--EAVKVFDEMLTK----------GEVKPEAVMYN 261

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A++    + GK    L   D+M E G    V TYN+++       R      ++E +   
Sbjct: 262 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 321

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+ L + T+  L+  +   G+++ A  I + M   RR V   +       Y+   +G   
Sbjct: 322 GLALDVFTYNILINGHCKEGNVKKALEIFENM--SRRGVRATVVTYTSLIYALSKKGQVQ 379

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           + D++F++ +   I P             +  +Y  L+  +   G +     ++G M ++
Sbjct: 380 ETDKLFDEAVRRGIRP-------------DLVLYNALINSHSTSGNIDRAFEIMGEMEKK 426

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD VTY T++  L   G +D AR+++ EMT+ G+  + +TYN L+ GY  +  +
Sbjct: 427 R---IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDV 483

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A  +  EM +     P +++YN LI G         A     EM   GI P   +Y +
Sbjct: 484 KDALRIRNEMMNKG-FNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 542

Query: 363 LMKAF 367
           L++  
Sbjct: 543 LIEGL 547



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 97/186 (52%), Gaps = 6/186 (3%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  + A+M R+ +P    T+NI+L+  C   +  +A ELLR+M       P+ V+YN +I
Sbjct: 138 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP-----RPNAVTYNTVI 192

Query: 330 DGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
            GF        AL    EMR RG IAP + +Y T++  +    +   A KVFDEML    
Sbjct: 193 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 252

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           VK + V +N L+ GYC  G ++ A    +RM E G    VATY  L + + +  +  EA 
Sbjct: 253 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 312

Query: 449 LLWKEI 454
            L +E+
Sbjct: 313 ELVEEM 318



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
           SA A   F +M    +     ++  +++    + +P  A ++  +M R      + V +N
Sbjct: 135 SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRP-----NAVTYN 189

Query: 398 MLVEGYCRMGLVEEAKRIIERMKE-NGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            ++ G+C  G V+ A  I+  M+E  G  PN  TYG++ +G     +  EA+ ++ E+  
Sbjct: 190 TVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT 249

Query: 457 RCEVKKEGV 465
           + EVK E V
Sbjct: 250 KGEVKPEAV 258


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 197/442 (44%), Gaps = 26/442 (5%)

Query: 1   MLRSGYLPHVKAW--STVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           + R G+L +      S  +S+ A+S    P+ +  L    V++V             P  
Sbjct: 290 LAREGHLENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTL 349

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YNA+++      + +     F +M   G  PD++TYN M+    +A      +++L  
Sbjct: 350 VTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGD 409

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELDLEDYSSE 176
           +   G+   + T+ +L+  Y   G LE A  + + M E     DVC     ++     S 
Sbjct: 410 LRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMN----GSH 465

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
              +     E F+++L   + P          FA N+RI   L+ G  ++      V ML
Sbjct: 466 KVRNLPMAREFFDEMLSKGLQPDC--------FAYNTRICAELILGDTHKAFQLREVMML 517

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             +        +PD VTY  ++  L K G++  A+ +  +M   G+  + ITY  L+  +
Sbjct: 518 KGI--------YPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAH 569

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++  + +A++LL  M  D  ++P VV+Y ILI       +   A  +F +M   GI P 
Sbjct: 570 CERGLLSEARKLLNGMVSDG-LQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPN 628

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           +I+Y  L+ A   + +  LA   F EML +  +  +   + +L++G CR G   +A R+ 
Sbjct: 629 EITYNVLIHALCRTGRTLLAYHHFHEML-ERGLAPNKYTYTLLIDGNCREGNWADAIRLY 687

Query: 417 ERMKENGFYPNVATYGSLANGI 438
             M +NG  P+  T+ +L  G 
Sbjct: 688 FEMHQNGIPPDYCTHNALFKGF 709



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    Y TL+  ++ EGR  +   +L  M  Q       D VTY  V+S L + G ++ A
Sbjct: 241 PTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLND-VTYNVVISFLAREGHLENA 299

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++  M R+   A+  TYN L+    ++  + K + L  EM ++  I P +V+YN +I 
Sbjct: 300 AKLVDSM-RLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEG-IMPTLVTYNAIIH 357

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G +  +    A   F EMRA G+ P  I+Y +++  +  +   K A  +  + LR   + 
Sbjct: 358 GLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGD-LRRAGLA 416

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
             ++ +N L++GYCR+G +EEA+R+ E M E G +P+V TY  L NG
Sbjct: 417 PTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNG 463



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 108/509 (21%), Positives = 209/509 (41%), Gaps = 51/509 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N VL    +  +      ++ +M +   +P ++TYN ++    +  RK     +
Sbjct: 206 PDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASML 265

Query: 116 LERILEMG--ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--------------- 158
           L+ +   G    L   T+  +++     G LE A  +V +MR  +               
Sbjct: 266 LKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALL 325

Query: 159 -RDVCKIIRELDLEDYSSENEG---DDDDDDEVFEKLLPNSINPSSE---PPLLPKTFAP 211
            R   + +  L +E    ENEG        + +   LL +    +++     +      P
Sbjct: 326 ERGFVQKVEALQME---MENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLP 382

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +   Y +++ GY   G + + + +LG +RR       P  +TY T++    + G ++ AR
Sbjct: 383 DLITYNSMLNGYCKAGNLKEALWLLGDLRRA---GLAPTVLTYNTLIDGYCRLGGLEEAR 439

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++  EM   G   +  TY IL+ G  +   +  A+E   EM     ++PD  +YN  I  
Sbjct: 440 RLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKG-LQPDCFAYNTRICA 498

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
            +++ D+  A      M  +GI P  ++Y  ++     +   K A  +  +M+ D  ++ 
Sbjct: 499 ELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDG-LQP 557

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY----------GSLANGISLA 441
           D + +  L+  +C  GL+ EA++++  M  +G  P+V TY          G+L +     
Sbjct: 558 DCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWF 617

Query: 442 RKPGEALLLWKEIKER------CEVKKEGV---NADSDLPPPLKPDEELLDALADICVRA 492
           RK  +  +   EI         C   +  +   +    L   L P++     L D   R 
Sbjct: 618 RKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCRE 677

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKIY 521
             +  A+ +   M ++GIPP+   +  ++
Sbjct: 678 GNWADAIRLYFEMHQNGIPPDYCTHNALF 706


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 185/411 (45%), Gaps = 60/411 (14%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFV 115
           D+A    V+ A    G+ +    LF +M E G  P+++ Y+  I  LC R   K     V
Sbjct: 215 DSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAF-HV 273

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE ++  G+   + T  SL+      G +E      +A R                    
Sbjct: 274 LEEMVGKGLKPNVYTHTSLIDGLCKIGWME------RAFR-------------------- 307

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                      +F KL+ +S            ++ PN   YT ++ GY  EG+++    +
Sbjct: 308 -----------LFLKLVKSS------------SYKPNVHTYTVMIGGYCKEGKLARAEML 344

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           LG M  Q      P+  TYTT++    K GS DRA +++ +M   G   N  TYN ++ G
Sbjct: 345 LGRMVEQ---GLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGG 401

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C++ +I +A ++LR MA    +  D V+Y ILI           AL  F +M  +   P
Sbjct: 402 FCKKGKIQEAYKVLR-MATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHP 460

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +YTT++  +    Q + + ++FD+ L    V      +  ++ GYCR+G +  A ++
Sbjct: 461 DIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTK-QTYTSMIAGYCRLGKLTSALKV 519

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----CEVKK 462
            ERM ++G  P+  TYG+L + +    +  EA  L++ + ++    C+V +
Sbjct: 520 FERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTR 570



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 147/334 (44%), Gaps = 29/334 (8%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  +S   T +++ +  +GR  +   +    RR  +  + P+ V Y+  +  L + G + 
Sbjct: 212 FCLDSATCTVVVRAFCRQGRFRNVTDLF---RRMSEMGTPPNMVNYSAWIDGLCERGYVK 268

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  VL EM   G+  N  T+  L+ G C+   +++A  L  ++   +  +P+V +Y ++
Sbjct: 269 QAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVM 328

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G+      A A      M  +G+AP   +YTTL+           A ++ ++M  +  
Sbjct: 329 IGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGF 388

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE-- 446
           +  +I  +N ++ G+C+ G ++EA +++      G + +  TY  L   I+   K G   
Sbjct: 389 LP-NIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTIL---ITEHCKQGHIT 444

Query: 447 -ALLLWKEIKER----------------CEVKKEGVNA---DSDLPPPLKPDEELLDALA 486
            AL L+K++ E+                C+ ++   +    D  L   L P ++   ++ 
Sbjct: 445 CALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMI 504

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               R      AL++   M +HG  P+   Y  +
Sbjct: 505 AGYCRLGKLTSALKVFERMVQHGCLPDSITYGAL 538



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 111/282 (39%), Gaps = 27/282 (9%)

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLK-GYCQQLQIDKAKELLREMADDA-KIEP 320
           +AG +  A  +L E+   G+P    T N +L+ G         A+E    MA  A  + P
Sbjct: 120 EAGRLREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVRP 179

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D  S+  L+ G         A      M A+G      + T +++AF    + +    +F
Sbjct: 180 DHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLF 239

Query: 381 DEM--LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
             M  +  P   V+  AW   ++G C  G V++A  ++E M   G  PNV T+ SL +G+
Sbjct: 240 RRMSEMGTPPNMVNYSAW---IDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 439 SLARKPGEALLLWKEIKERCEVK--------------KEGVNADSDL------PPPLKPD 478
                   A  L+ ++ +    K              KEG  A +++         L P+
Sbjct: 297 CKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 356

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 L     +   F +A E++  M+  G  PN   Y  I
Sbjct: 357 TNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAI 398



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/333 (18%), Positives = 136/333 (40%), Gaps = 32/333 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  Y  +++     G   +  +L ++M   G  P++ TYN +I    +  +      V
Sbjct: 355 PNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKV 414

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L      G+ L   T+  L+  +   G +  A  + + M E     C      D+  Y++
Sbjct: 415 LRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAE---KSC----HPDIHTYTT 467

Query: 176 -----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                  +   +   ++F+K L   + P+ +              YT+++ GY   G+++
Sbjct: 468 IIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQ-------------TYTSMIAGYCRLGKLT 514

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             +++     R   +   PD +TY  ++S+L K   ++ AR +   M    +    +T  
Sbjct: 515 SALKVF---ERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRV 571

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L   YC++ +I  A   L  +  D + +      + L+     + +   A  F   +  
Sbjct: 572 TLAYEYCRRDKITIAVSFLDRL--DKRQQAHTA--DALVRKLSTVGNLDAASLFLKNVLD 627

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +  A    +YT+ + +   S++  LA+++ +++
Sbjct: 628 KHYAVDHATYTSFINSCYESNRYALASEISEKI 660


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 181/387 (46%), Gaps = 22/387 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLV 113
           +P+   YN V+      G+ +  L++  +M E G   PD  TY  +I    +  R    V
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAV 203

Query: 114 FVLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            V + +L  G +      + +L+  Y   G L++A    + M +  R +   +   +L  
Sbjct: 204 KVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQ--RGIAMTVATYNLLM 261

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           ++   +    D   V E++  N              F+P+   Y  L+ GY  EG     
Sbjct: 262 HALFMDARASDAYAVLEEMQKNG-------------FSPDVFTYNILINGYCKEGNEKKA 308

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M ++   A+    VTYT+++    + G +    ++     + G+  + + YN L
Sbjct: 309 LEVFEEMSQKGVRATA---VTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNAL 365

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +C    +++A E++ EM +  +I PD ++YN L+ GF L+     A T  +EM  RG
Sbjct: 366 INSHCTGGDMERAYEIMAEM-EKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRG 424

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P  +SY TL+  +++    K A +V DEM+ D      ++ +N L++G C++   ++A
Sbjct: 425 IQPDLVSYNTLISGYSMKGDIKDALRVRDEMM-DKGFNPTLMTYNALIQGLCKIRQGDDA 483

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + +++ M   G  P+ +TY SL  G++
Sbjct: 484 ENLMKEMVAKGITPDDSTYISLIEGLT 510



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 181/399 (45%), Gaps = 26/399 (6%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVL 116
           T  +N +L      GKP + L+L  QM     +P+ +TYN +I   CAR   +  L  + 
Sbjct: 116 TTTFNIMLRHLCATGKPVRALELLRQM----PRPNAVTYNTVIAGFCARGRVQAALEVMR 171

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSS 175
           E     GI     T+ +L++ +   G +E A  +   M  +G      ++    +  Y  
Sbjct: 172 EMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYC- 230

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            + G  D   +  E ++   I             A     Y  LM     + R SD   +
Sbjct: 231 -DVGKLDVALQYREDMVQRGI-------------AMTVATYNLLMHALFMDARASDAYAV 276

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M++   N   PD  TY  +++   K G+  +A +V  EM++ GV A  +TY  L+  
Sbjct: 277 LEEMQK---NGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYV 333

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           + ++ Q+ +   L   +A    I PDVV YN LI+      D   A     EM  + I P
Sbjct: 334 FSRKGQVQETDRLF-NVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPP 392

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y TLM+ F L  +   A  + DEM +   ++ D+V++N L+ GY   G +++A R+
Sbjct: 393 DDMTYNTLMRGFCLLGRLDEARTLIDEMTKR-GIQPDLVSYNTLISGYSMKGDIKDALRV 451

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + M + GF P + TY +L  G+   R+  +A  L KE+
Sbjct: 452 RDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEM 490



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 131/283 (46%), Gaps = 37/283 (13%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            AP+   Y TL+ G+   GR+ D V++   M  + + A  P  V Y  ++      G +D
Sbjct: 179 IAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVA--PSAVMYNALIGGYCDVGKLD 236

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A Q   +M + G+     TYN+L+       +   A  +L EM  +    PDV +YNIL
Sbjct: 237 VALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNG-FSPDVFTYNIL 295

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD-- 386
           I+G+    +   AL  F EM  +G+  T ++YT+L+  F+   Q +  +++F+  ++   
Sbjct: 296 INGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGI 355

Query: 387 --------------------------------PRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                                            R+  D + +N L+ G+C +G ++EA+ 
Sbjct: 356 RPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEART 415

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +I+ M + G  P++ +Y +L +G S+     +AL +  E+ ++
Sbjct: 416 LIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDK 458



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 18/273 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           P+ VTY TV++     G +  A +V+ EM  R G+  ++ TY  L+ G+C+  +++ A +
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +  EM    ++ P  V YN LI G+  +     AL +  +M  RGIA T  +Y  LM A 
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            + ++   A  V +EM ++     D+  +N+L+ GYC+ G  ++A  + E M + G    
Sbjct: 265 FMDARASDAYAVLEEMQKN-GFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRAT 323

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
             TY SL    S   +  E   L+        VKK            ++PD  + +AL +
Sbjct: 324 AVTYTSLIYVFSRKGQVQETDRLFN-----VAVKKG-----------IRPDVVMYNALIN 367

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    +A EI+A ME+  IPP+   Y  +
Sbjct: 368 SHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTL 400


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 143/302 (47%), Gaps = 20/302 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y T++ G    G+  D ++M   M++      +P+ + Y TV+  L K G +D A  +  
Sbjct: 178 YGTIINGLCKIGKTRDAIQMFPKMKKIR---VYPNLIMYNTVIDGLCKQGLVDEACGLCT 234

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM   G+  +  +YN ++ G+C   +   A +LL EM    K+ PDV ++NILIDG   +
Sbjct: 235 EMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKL 294

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
              + A      M  RG  P  +SY  LM  + LS     A +VFD+M+    +  ++++
Sbjct: 295 GRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALP-NVIS 353

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  L+ GYC++ +V+EA  ++  M      P+  TY  L +G+S   K G +L  W  + 
Sbjct: 354 YCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLS---KSGRSLYEWDLV- 409

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                  E + A S  P  L     LLD       +   F KAL +   + E GI PN  
Sbjct: 410 -------EAMRA-SGQPADLITYNVLLDDY----FKHEKFDKALALFQHIIEIGISPNIR 457

Query: 516 KY 517
            Y
Sbjct: 458 TY 459



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 130/255 (50%), Gaps = 6/255 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L   F  + RI TTLMKG   +GRV + V +L       D     D V Y T+++ L K
Sbjct: 131 ILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLL---HEYVDRGFRFDEVCYGTIINGLCK 187

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G    A Q+  +M +I V  N I YN ++ G C+Q  +D+A  L  EM ++  IE DV 
Sbjct: 188 IGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENG-IELDVY 246

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           SYN +I GF  +     A+   +EM  RG + P   ++  L+       +   A  V   
Sbjct: 247 SYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAV 306

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M++    K DIV++N L+ GYC  G V EAK++ ++M E    PNV +Y +L NG    R
Sbjct: 307 MIKRGW-KPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVR 365

Query: 443 KPGEALLLWKEIKER 457
              EA++L  E+  +
Sbjct: 366 MVDEAMVLLTEMHNK 380



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 188/457 (41%), Gaps = 81/457 (17%)

Query: 46  SDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105
           S P I    KP    ++ ++NA A LG+      L   + + G + DV     ++K    
Sbjct: 97  SKPTI----KPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCL 152

Query: 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG-------------------DLEI 146
             R    V +L   ++ G       + +++      G                   +L +
Sbjct: 153 KGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIM 212

Query: 147 AETIVQAM-REGRRD-VCKIIR-------ELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
             T++  + ++G  D  C +         ELD+  Y+S   G               ++ 
Sbjct: 213 YNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGR------FQAAVK 266

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
              E  +  K + P+   +  L+ G    GRVS+   ++  M ++      PD V+Y  +
Sbjct: 267 LLDEMVVRGKVY-PDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR---GWKPDIVSYNAL 322

Query: 258 VSALVKAGSMDRARQVLAEMT-RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++    +GS+  A+QV  +M  R  +P N I+Y  L+ GYC+   +D+A  LL EM  + 
Sbjct: 323 MNGYCLSGSVGEAKQVFDKMVERTALP-NVISYCTLINGYCKVRMVDEAMVLLTEM-HNK 380

Query: 317 KIEPDVVSYNILIDGF-----------------------------ILIDDSA------GA 341
            + PD V+YN L+DG                              +L+DD         A
Sbjct: 381 NLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKA 440

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L  F  +   GI+P   +Y  L+     S + K A ++F ++L     + +I  +N+++ 
Sbjct: 441 LALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIF-QLLSAKGCQPNIRTYNIMIH 499

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           G C+ G ++EA+ ++ +M  N + PN  T+ ++   I
Sbjct: 500 GLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAI 536



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 40/246 (16%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  +T++ +++A  + G M  A  +L  + ++G   +      L+KG C + ++ +A  L
Sbjct: 103 PSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSL 162

Query: 309 LREMAD------------------------DA----------KIEPDVVSYNILIDGFI- 333
           L E  D                        DA          ++ P+++ YN +IDG   
Sbjct: 163 LHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCK 222

Query: 334 --LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
             L+D++ G  T   EM   GI     SY +++  F    + + A K+ DEM+   +V  
Sbjct: 223 QGLVDEACGLCT---EMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYP 279

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D+  +N+L++G C++G V EA  ++  M + G+ P++ +Y +L NG  L+   GEA  ++
Sbjct: 280 DVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVF 339

Query: 452 KEIKER 457
            ++ ER
Sbjct: 340 DKMVER 345



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/418 (20%), Positives = 160/418 (38%), Gaps = 104/418 (24%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+   V+  +T++  L   G    +E+V L    V R  +F           D   
Sbjct: 131 ILKMGFQIDVRILTTLMKGLCLKGR--VLEAVSLLHEYVDRGFRF-----------DEVC 177

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y  ++N    +GK +  +Q+F +M +    P+++ YN +I  LC +           E +
Sbjct: 178 YGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMV 237

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------------------- 154
            E GI L + ++ S++  +   G  + A  ++  M                         
Sbjct: 238 -ENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGR 296

Query: 155 -REGRRDVCKIIRELDLEDYSSEN--------EGDDDDDDEVFEKL-----LPNSINPSS 200
             E    V  +I+     D  S N         G   +  +VF+K+     LPN I+  +
Sbjct: 297 VSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCT 356

Query: 201 ------------EPPLL-----PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ- 242
                       E  +L      K   P++  Y  L+ G    GR      ++ AMR   
Sbjct: 357 LINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASG 416

Query: 243 ------------EDNASH-------------------PDHVTYTTVVSALVKAGSMDRAR 271
                       +D   H                   P+  TY  ++  L K+G +  A+
Sbjct: 417 QPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAK 476

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           ++   ++  G   N  TYNI++ G C++  +D+A+ LL +M ++  + P+ ++++ ++
Sbjct: 477 EIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYL-PNYITFDTIV 533



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 101/266 (37%), Gaps = 49/266 (18%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           +N LL    +  + +    L   +     I+P +++++ILI+ F  +     A +    +
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKV----------FDEM--------------- 383
              G        TTLMK   L  +   A  +          FDE+               
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKT 191

Query: 384 ---------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
                    ++  RV  +++ +N +++G C+ GLV+EA  +   M ENG   +V +Y S+
Sbjct: 192 RDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSM 251

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            +G     +   A+ L  E+  R +V                PD    + L D   +   
Sbjct: 252 IHGFCSVGRFQAAVKLLDEMVVRGKV---------------YPDVYTFNILIDGLCKLGR 296

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
             +A  +VA M + G  P+   Y  +
Sbjct: 297 VSEAYNVVAVMIKRGWKPDIVSYNAL 322


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 177/387 (45%), Gaps = 10/387 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ V+    +  K +K   LF +M   G  PDV TY ++I    +A       ++
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +  +G +  + T+ +L+ AY+    +  A  I   M +       +     ++    
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC- 404

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSE---PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              G+     EV+ KL+  S +  S+   P     T APN   Y  L+ G     +V   
Sbjct: 405 -KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHA 463

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L AM     +   P+H+ Y  ++    KAG +D A++V  +MT+ G   +  TY  L
Sbjct: 464 HELLDAML---SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSL 520

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +    +  ++D A ++L +M  D+   P+VV+Y  +IDG   I +S  AL   + M  +G
Sbjct: 521 IDRMFKDGRLDLAMKVLSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            +P  ++YT L+     + +  L+  +F +M R      + V + +L+   C  GL+++A
Sbjct: 580 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG-CSPNYVTYRVLINHLCAAGLLDKA 638

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
           + ++  MK+  +   +  Y     G S
Sbjct: 639 RLLLGEMKQTYWPKYLQGYRCAIQGFS 665



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 184/442 (41%), Gaps = 83/442 (18%)

Query: 44  KFSDPDIVSDSKP---DTAAYNAVLN---------ACANLGKPKKFLQLFDQMHEFGAKP 91
           K   PD++  ++    +  A N VLN             +GK  K  QL  +M   G  P
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 286

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           D  TY+ +I     A++      + + +  +G+T  + T+  L+ ++   G +E A+ + 
Sbjct: 287 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           + MR                                       S+  S           P
Sbjct: 347 EEMR---------------------------------------SVGCS-----------P 356

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
               YT L+  Y+   +V     +     R  D    P+ VTY  +V  L KAG++ +A 
Sbjct: 357 TVVTYTALIHAYLKAKQVPQANDIF---HRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 413

Query: 272 QVLAEMT----------------RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           +V A++                 R  +  N +TY  L+ G C+  ++D A ELL  M   
Sbjct: 414 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 473

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
              EP+ + Y+ LIDGF        A   F +M   G  P+  +YT+L+       +  L
Sbjct: 474 G-CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 532

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A KV  +ML+D     ++V +  +++G CR+G  E+A +++  M+E G  PNV TY +L 
Sbjct: 533 AMKVLSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 591

Query: 436 NGISLARKPGEALLLWKEIKER 457
           +G+  A K   +L L+ ++  +
Sbjct: 592 DGLGKAGKIDLSLDLFTQMSRK 613



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/464 (23%), Positives = 185/464 (39%), Gaps = 72/464 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRV--RKFSDPDIVSDSK--- 55
           M+ +G  P+   +  +V  L  +G+       K F+V  K +     +D D     +   
Sbjct: 384 MVDAGCRPNDVTYGALVDGLCKAGNIS-----KAFEVYAKLIGTSDSADSDFYFPCEDRH 438

Query: 56  ---PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
              P+   Y A+++      K     +L D M   G +P+ + Y+ +I    +A +    
Sbjct: 439 TLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA 498

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             V  ++ + G    + T+ SL               I +  ++GR D+           
Sbjct: 499 QEVFLQMTKCGYLPSVHTYTSL---------------IDRMFKDGRLDLAM--------- 534

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                        +V  ++L +S  P             N   YT ++ G    G     
Sbjct: 535 -------------KVLSQMLKDSCTP-------------NVVTYTAMIDGLCRIGESEKA 568

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +++L  M   E+    P+ VTYT ++  L KAG +D +  +  +M+R G   N +TY +L
Sbjct: 569 LKLLSLM---EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVV-SYNILIDGFILIDDSAGALTFFNEMRAR 351
           +   C    +DKA+ LL EM       P  +  Y   I GF        +L    EM + 
Sbjct: 626 INHLCAAGLLDKARLLLGEMKQ--TYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESY 681

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP-RVKVDIVAWNMLVEGYCRMGLVE 410
           G  P    Y  L+  F+ + + ++A ++  EM+  P  VK D   +  L++  C    VE
Sbjct: 682 GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVE 741

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           EA R+   M   GF P ++ +  L  G+   +K  EAL L   I
Sbjct: 742 EAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGI 785



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 128/286 (44%), Gaps = 38/286 (13%)

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L   G  D+A Q++ EM R G   +  TY+ ++   C   +++KA  L +EM     + 
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM-KMVGVT 320

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PDV +Y ILID F        A   F EMR+ G +PT ++YT L+ A+  + Q   AN +
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 380

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM------KENGFY-------- 425
           F  M+ D   + + V +  LV+G C+ G + +A  +  ++       ++ FY        
Sbjct: 381 FHRMV-DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHT 439

Query: 426 --PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PNV TYG+L +G+  A K   A  L                 D+ L    +P+  + D
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELL----------------DAMLSSGCEPNHIVYD 483

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMF 529
           AL D   +A     A E+   M + G  P+       Y  +  RMF
Sbjct: 484 ALIDGFCKAGKIDSAQEVFLQMTKCGYLPS----VHTYTSLIDRMF 525



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 146/333 (43%), Gaps = 37/333 (11%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P++  Y+ ++    +  +V     +   M+        PD  TYT ++ +  K
Sbjct: 279 MMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMV---GVTPDVYTYTILIDSFCK 335

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +++A+ +  EM  +G     +TY  L+  Y +  Q+ +A ++   M D A   P+ V
Sbjct: 336 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD-AGCRPNDV 394

Query: 324 SYNILIDGF----------------ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +Y  L+DG                 I   DSA +  +F       +AP  ++Y  L+   
Sbjct: 395 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 454

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + +   A+++ D ML     + + + ++ L++G+C+ G ++ A+ +  +M + G+ P+
Sbjct: 455 CKAHKVDHAHELLDAMLSSG-CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 513

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY SL   I    K G   L  K + +              L     P+     A+ D
Sbjct: 514 VHTYTSL---IDRMFKDGRLDLAMKVLSQM-------------LKDSCTPNVVTYTAMID 557

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R     KAL++++ MEE G  PN   Y  +
Sbjct: 558 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 590



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 110/484 (22%), Positives = 186/484 (38%), Gaps = 78/484 (16%)

Query: 82  DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
           D + +FG +P  +TYN ++++ + A +  L   V + + E G   CM  F     A+   
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESG--FCMDRFTVGCFAHALC 86

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF-EKLLPNSINPSS 200
            +   A+ +    RE      K+   L     S   E    D+   F  ++  NS     
Sbjct: 87  KEGRWADALDMIEREDF----KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSC---- 138

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
                     PN   Y TL+ G++ + ++    R++  M  +  N   P+   + ++V +
Sbjct: 139 ---------IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCN---PNPSLFNSLVHS 186

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI------------------ 302
                    A ++L  MT  G P   + YNI +   C Q ++                  
Sbjct: 187 YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLA 246

Query: 303 -----------------------DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
                                  DKA +L++EM     + PD  +Y+ +I          
Sbjct: 247 ANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVE 305

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A   F EM+  G+ P   +YT L+ +F  +   + A  +F+EM R       +V +  L
Sbjct: 306 KAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTAL 364

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           +  Y +   V +A  I  RM + G  PN  TYG+L +G+  A    +A  ++ ++    +
Sbjct: 365 IHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSD 424

Query: 460 VKKEGVNADSDLPPP------LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                 +ADSD   P      L P+     AL D   +A     A E++  M   G  PN
Sbjct: 425 ------SADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 478

Query: 514 KTKY 517
              Y
Sbjct: 479 HIVY 482


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 185/384 (48%), Gaps = 22/384 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+   +N ++N    LG       +  ++ + G +PD++T N  IK  C +      L F
Sbjct: 101 PNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNF 160

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             ++++ +G  L   ++ +L+      G  ++ ET   A++  RR   K++ +L+   Y+
Sbjct: 161 -HDKLVALGFHLDQVSYGTLIN-----GLCKVGET-RAALQLLRRVDGKLV-QLNAVMYN 212

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +  +G   D      K + ++ +  SE  ++ K  +P+   Y+ L++G+   G++ D + 
Sbjct: 213 TVIDGMSKD------KHVNDAFDLYSE--MVAKRISPDVVTYSALIRGFFIVGKLKDAID 264

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      PD  T+  +V    K G + +A+ VL  M    +  N  T+N L+ 
Sbjct: 265 LFNKMILEN---IKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVD 321

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C+  ++ + K +   M     I+P+VV+Y  L+DG+ L+     A   FN M  RG+ 
Sbjct: 322 GFCKDRKMKEGKTVFAMMMKQG-IKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVT 380

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
               SY  ++  F    +   A K+F EM     +  D+V +N L++G C+ G +  A +
Sbjct: 381 ANVHSYNIMINGFCKIKKVDKAMKLFIEM-HHKHIIPDVVTYNSLIDGLCKSGKISYAFQ 439

Query: 415 IIERMKENGFYPNVATYGSLANGI 438
           ++  M + G  PN+ TY S+ N +
Sbjct: 440 LVNEMHDRGQPPNIITYNSILNAL 463



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 163/371 (43%), Gaps = 45/371 (12%)

Query: 188 FEKLLPNS------INPSSEPPLLPKTFA-----------PNSRIYTTLMKGYMNEGRVS 230
           FE + PN       IN   +  L+P  F+           P+     T +KG+  +G++ 
Sbjct: 96  FEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIH 155

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             +     +        H D V+Y T+++ L K G    A Q+L  +    V  N + YN
Sbjct: 156 QALNFHDKLVAL---GFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYN 212

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++ G  +   ++ A +L  EM    +I PDVV+Y+ LI GF ++     A+  FN+M  
Sbjct: 213 TVIDGMSKDKHVNDAFDLYSEMVA-KRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMIL 271

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             I P   ++  L+  F    + K A  V D M+    +K ++  +N LV+G+C+   ++
Sbjct: 272 ENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQD-IKPNVSTFNTLVDGFCKDRKMK 330

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER------------- 457
           E K +   M + G  PNV TY SL +G  L ++  +A  ++  + +R             
Sbjct: 331 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMI 390

Query: 458 ---CEVKKEGVNADSDL-----PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
              C++KK  V+    L        + PD    ++L D   ++     A ++V  M + G
Sbjct: 391 NGFCKIKK--VDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRG 448

Query: 510 IPPNKTKYKKI 520
            PPN   Y  I
Sbjct: 449 QPPNIITYNSI 459



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 151/333 (45%), Gaps = 37/333 (11%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   +  L+  +   G +     +L  + +       PD +T  T +      G + +A
Sbjct: 101 PNFVTFNILINCFCQLGLIPFAFSVLAKILKM---GYEPDIITLNTFIKGFCLKGQIHQA 157

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                ++  +G   ++++Y  L+ G C+  +   A +LLR + D   ++ + V YN +ID
Sbjct: 158 LNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRV-DGKLVQLNAVMYNTVID 216

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A   ++EM A+ I+P  ++Y+ L++ F +  + K A  +F++M+ +  +K
Sbjct: 217 GMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILE-NIK 275

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+  +N+LV+G+C+ G +++AK +++ M      PNV+T+ +L +G    RK  E   +
Sbjct: 276 PDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTV 335

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           +  +       K+G+          KP+     +L D         KA +I   M + G+
Sbjct: 336 FAMM------MKQGI----------KPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGV 379

Query: 511 PPNKTKYK----------------KIYVEMHSR 527
             N   Y                 K+++EMH +
Sbjct: 380 TANVHSYNIMINGFCKIKKVDKAMKLFIEMHHK 412



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 182/426 (42%), Gaps = 59/426 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P +   +T +      G              + +   F D  +      D  +
Sbjct: 129 ILKMGYEPDIITLNTFIKGFCLKGQ-------------IHQALNFHDKLVALGFHLDQVS 175

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G+ +  LQL  ++     + + + YN +I   ++    +    +   ++
Sbjct: 176 YGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMV 235

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
              I+  + T+ +L+  +   G L+ A  +   M         I+  +  + Y+      
Sbjct: 236 AKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKM---------ILENIKPDVYTFNILVD 286

Query: 177 ---NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               EG       V + ++   I              PN   + TL+ G+  + ++ +  
Sbjct: 287 GFCKEGRLKKAKNVLDMMMIQDI-------------KPNVSTFNTLVDGFCKDRKMKEGK 333

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M +Q      P+ VTY +++        +++A+++   M++ GV AN  +YNI++
Sbjct: 334 TVFAMMMKQ---GIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMI 390

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C+  ++DKA +L  EM     I PDVV+YN LIDG       + A    NEM  RG 
Sbjct: 391 NGFCKIKKVDKAMKLFIEM-HHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQ 449

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  I+Y +++ A        L  K+ D+ ++ P +  D +    L++G C+ G +E A+
Sbjct: 450 PPNIITYNSILNA--------LLTKLKDQGIQ-PNMHTDTI----LIKGLCQSGKLEAAR 496

Query: 414 RIIERM 419
           ++ E +
Sbjct: 497 KVFEDL 502


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 133/247 (53%), Gaps = 4/247 (1%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y TL+  +   GR+   V +L  M  +      P+ VTY  V++ L + G +++A
Sbjct: 227 PSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCL-PNDVTYNVVINGLARKGELEKA 285

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            Q L ++ R+   A+  TYN L+ G   +  ++KA  LL EM ++  I P VV+YN LID
Sbjct: 286 AQ-LVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEG-IVPTVVTYNTLID 343

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     ++  A   F+EMRA+G+ P  I+Y +L+  +  +   K A  +F ++ R   + 
Sbjct: 344 GLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKR-AGLG 402

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             ++ +N+L++GYCR+G +E A+R+ E M E    P+V TY  L NG  + R      + 
Sbjct: 403 PTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIF 462

Query: 451 WKEIKER 457
           + E+  +
Sbjct: 463 FDEMLSK 469



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 125/541 (23%), Positives = 208/541 (38%), Gaps = 116/541 (21%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N VL    +  +      ++  M + G +P + TYN ++    +A R    V +L+  +E
Sbjct: 198 NCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKD-ME 256

Query: 122 MGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC----KIIRELDLEDYS 174
                C+    T+  ++      G+LE A  +V  MR  ++        +I  L   D+ 
Sbjct: 257 ARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFV 316

Query: 175 S---------ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
                     ENEG                               P    Y TL+ G   
Sbjct: 317 EKAGALLLEMENEG-----------------------------IVPTVVTYNTLIDGLFK 347

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            G           MR +      PD +TY ++++   KAG++ +A  +  ++ R G+   
Sbjct: 348 TGNAEAAQVKFDEMRAK---GLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPT 404

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
            +TYNIL+ GYC+   ++ A+ L  EM ++  + PDV +Y IL++G  ++ + A    FF
Sbjct: 405 VLTYNILIDGYCRLGDLEGARRLKEEMTEEDCL-PDVCTYTILMNGSCMVRNLAMVRIFF 463

Query: 346 NEMRARGIAPTKISYTT----------LMKAFAL---------SSQPKLANKVFDEM--- 383
           +EM ++G+ P   +Y T          +  AF L         SS     N + D +   
Sbjct: 464 DEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKT 523

Query: 384 --LRDPRV----------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
             L+D  V          ++D V +  L+  +C  G + EAK I + M  +G  P+V TY
Sbjct: 524 GSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTY 583

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
                 I    + G   L +   ++  E   EGV          +P+E   + L     R
Sbjct: 584 TIF---IHTYCRRGNLYLAYGWFRKMLE---EGV----------EPNEVTYNVLMHALCR 627

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYK----------------KIYVEMHSRMFTSKHAS 535
                 A +    M E G+ PNK  Y                 ++Y EMH +     H +
Sbjct: 628 MGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCT 687

Query: 536 Q 536
            
Sbjct: 688 H 688



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 167/418 (39%), Gaps = 71/418 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++     G  +     FD+M   G  PD++TYN +I    +A      + +
Sbjct: 333 PTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCL 392

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G+   + T+  L+  Y   GDLE A  + + M E                   
Sbjct: 393 FGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTE------------------- 433

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                        E  LP+                     YT LM G       S  VR 
Sbjct: 434 -------------EDCLPDVCT------------------YTILMNG-------SCMVRN 455

Query: 236 LGAMRRQED----NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
           L  +R   D        PD   Y T +SA +  G++  A Q+  EM   G+ ++ +TYN+
Sbjct: 456 LAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNV 515

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G C+   +  A  L  +M  D  +  D V+Y  LI           A   F+ M A 
Sbjct: 516 LIDGLCKTGSLKDAYVLWMKMVTDG-LRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVAS 574

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G++P+ ++YT  +  +       LA   F +ML +  V+ + V +N+L+   CRMG  E 
Sbjct: 575 GLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEE-GVEPNEVTYNVLMHALCRMGRTES 633

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW-KEIKERCEVKKEGVNAD 468
           A +    M E G  PN  TY  L +G   + K G     W   I+  CE+ ++G++ D
Sbjct: 634 AYQHFHEMLERGLVPNKYTYTLLIDG---SCKEGN----WVHAIRLYCEMHQKGIHPD 684



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 125/313 (39%), Gaps = 19/313 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++    LG  +   +L ++M E    PDV TY +++          ++   
Sbjct: 403 PTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIF 462

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +L  G+      + + ++A +  G +  A  + + M    R +       ++     
Sbjct: 463 FDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMM--LRGISSDTVTYNVLIDGL 520

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D   ++ K++ + +               +   YT L+  +   GR+ +   +
Sbjct: 521 CKTGSLKDAYVLWMKMVTDGLRL-------------DCVTYTCLIHAHCERGRLIEAKNI 567

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M     +   P  VTYT  +    + G++  A     +M   GV  N +TYN+L+  
Sbjct: 568 FDGMVA---SGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHA 624

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  + + A +   EM +   + P+  +Y +LIDG     +   A+  + EM  +GI P
Sbjct: 625 LCRMGRTESAYQHFHEMLERGLV-PNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHP 683

Query: 356 TKISYTTLMKAFA 368
              ++  L K F 
Sbjct: 684 DHCTHNALFKGFG 696



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 105/268 (39%), Gaps = 20/268 (7%)

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI- 100
           VR F D  +    +PD  AYN  ++A   +G      QL ++M   G   D +TYNV+I 
Sbjct: 459 VRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLID 518

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            LC   S K   V  ++ + + G+ L   T+  L+ A+   G L  A+ I   M      
Sbjct: 519 GLCKTGSLKDAYVLWMKMVTD-GLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLS 577

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
              +   + +  Y     G+       F K+L   + P             N   Y  LM
Sbjct: 578 PSVVTYTIFIHTYC--RRGNLYLAYGWFRKMLEEGVEP-------------NEVTYNVLM 622

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
                 GR     +    M    +    P+  TYT ++    K G+   A ++  EM + 
Sbjct: 623 HALCRMGRTESAYQHFHEML---ERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQK 679

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKEL 308
           G+  +  T+N L KG+ +    D  + L
Sbjct: 680 GIHPDHCTHNALFKGFGEGHMYDAVQYL 707


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 211/448 (47%), Gaps = 40/448 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P    + T+V+ +   GD   V ++ +       +RK  +  I    K +   
Sbjct: 36  MVEEGHQPDAVTYGTIVNGMCKLGD--TVSALNM-------LRKMDESQI----KANVVI 82

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCAR---ASRKHLLVFVL 116
           Y+A+++     G   K   +F +MHE G  P+VLTYN MI   C+    +  + LL  ++
Sbjct: 83  YSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMI 142

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           ER ++  +     TF +L+ A+V  G +  AE + + M   RR++           YSS 
Sbjct: 143 ERNIDPDVV----TFSALINAFVKEGKVSGAEELYREML--RRNIFPTTIT-----YSSM 191

Query: 177 NEGDD-----DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            +G       +D   +F+ ++    +P  +   L        R    L+ G+   G V+ 
Sbjct: 192 IDGFCKHSRLEDAKHMFDLMVSKGCSP--DIITLNTLIDGCCRAKRHLIHGFCQVGNVNV 249

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +   M     N   PD VT  T+++ L + G +++A ++     +  +  +  T NI
Sbjct: 250 AQDLFQEMIS---NGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNI 306

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++ G C+  ++D+A +L   +  +  +E DVV+YNILI  F+   +   A   + EM  +
Sbjct: 307 IINGMCKGNKVDEAWDLFNSLPVNG-VETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCK 365

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           GI P+ ++Y +++  F   ++ + A ++ D M+ +     D+V ++ L++GYC+ G V++
Sbjct: 366 GIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEG-CSPDVVTFSTLIKGYCKAGRVDD 424

Query: 412 AKRIIERMKENGFYPNVATYGSLANGIS 439
              +   M + G   +  TY +L +G  
Sbjct: 425 GLELFSEMCQRGLVADTITYNALIHGFC 452



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 16/253 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++  Y T++ G     ++ DTV  L  +R+ +++    + V Y+ +V  L K G+  +A
Sbjct: 43  PDAVTYGTIVNGMC---KLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKA 99

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           + +  EM   G+  N +TYN ++ GYC   +   A++LLR+M  +  I+PDVV+++ LI+
Sbjct: 100 QNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMI-ERNIDPDVVTFSALIN 158

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            F+     +GA   + EM  R I PT I+Y++++  F   S+ + A  +FD M+      
Sbjct: 159 AFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVS-KGCS 217

Query: 391 VDIVAWNMLVE-----------GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            DI+  N L++           G+C++G V  A+ + + M  NG  P++ T  +L  G+ 
Sbjct: 218 PDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLC 277

Query: 440 LARKPGEALLLWK 452
              K  +AL ++K
Sbjct: 278 ENGKLEKALEMFK 290



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 189/450 (42%), Gaps = 78/450 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK----- 55
           M   G  P+V  ++ ++    + G     E + L D++ + +    DPD+V+ S      
Sbjct: 106 MHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQL-LRDMIERNI----DPDVVTFSALINAF 160

Query: 56  ----------------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
                                 P T  Y+++++      + +    +FD M   G  PD+
Sbjct: 161 VKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDI 220

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           +T N +I  C RA R HL+        ++G + +    FQ +++  V   D+    T++ 
Sbjct: 221 ITLNTLIDGCCRAKR-HLI----HGFCQVGNVNVAQDLFQEMISNGVS-PDIVTCNTLLA 274

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
            + E  +       E  LE +            +VF+K         S+  L       +
Sbjct: 275 GLCENGK------LEKALEMF------------KVFQK---------SKMDL-------D 300

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           +     ++ G     +V +   +  ++     N    D VTY  ++   VK G+  RA  
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPV---NGVETDVVTYNILIGVFVKEGNFLRAED 357

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +  EM   G+  + +TYN ++ G+C+Q ++++A++++  M  +    PDVV+++ LI G+
Sbjct: 358 IYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEG-CSPDVVTFSTLIKGY 416

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                    L  F+EM  RG+    I+Y  L+  F        A  +F+EM+    V  D
Sbjct: 417 CKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSG-VCPD 475

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
            + +  ++ G C    +++   ++E ++++
Sbjct: 476 TITFRSMLAGLCTKAELQKGLTMLEDLQKS 505


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 192/405 (47%), Gaps = 26/405 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
           +P +   ++V+      G+    L L + M + G  PD+ T++++I +LC     +    
Sbjct: 371 QPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE 430

Query: 114 FV--LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           F+  ++R +    +    ++ SL+ +      +  A  I   M   R  V       D+ 
Sbjct: 431 FLQGMDRKISSRSSS-CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFV------PDVV 483

Query: 172 DYSSENEGDDDDDD-EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            YS   +G    D+    EKL    I+ +           PN   Y   + G M +GR++
Sbjct: 484 SYSILIDGFCKIDELGRAEKLYKQMIDLNC---------VPNVTTYNAFLNGLMRKGRIA 534

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D     G           PD +TY+T++     A   D+A ++   M   G   N +TYN
Sbjct: 535 DA---QGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYN 591

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            LL G C++ + D+A EL R+M +    +PD V+Y  L+ GF  +     A+  F+EM +
Sbjct: 592 CLLHGLCKESKPDEAHELFRKMVERG-CDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVS 650

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P  ++Y  L+K F  + +P  A ++F  M+   + K D V+ N++++G  +   ++
Sbjct: 651 KGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMV-SRQCKPDTVSHNIMIDGLSKAKRLD 709

Query: 411 EAKRIIERMKE-NGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +A  + ERM++ +G  P++ TY SL  G+   ++  EA+ ++KEI
Sbjct: 710 DAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 754



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 135/309 (43%), Gaps = 27/309 (8%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y +L+       +V     +   M  +      PD V+Y+ ++    K   + RA ++  
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFV--PDVVSYSILIDGFCKIDELGRAEKLYK 506

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M  +    N  TYN  L G  ++ +I  A+ +  EM   A   PDV++Y+ LI GF L 
Sbjct: 507 QMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVA-AGCSPDVITYSTLIHGFSLA 565

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVD 392
                A   F  M +RG  P  ++Y  L+      S+P  A+++F +M+    DP    D
Sbjct: 566 RKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDP----D 621

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
            V +  L+ G+C +G +E+A  + + M   G  P+V  Y  L  G   A KPGEA  L++
Sbjct: 622 RVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQ 681

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE-HGIP 511
            +  R                  KPD    + + D   +A     A+E+   ME+ HG  
Sbjct: 682 VMVSR----------------QCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCS 725

Query: 512 PNKTKYKKI 520
           P+   Y  +
Sbjct: 726 PDLVTYNSL 734



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 136/313 (43%), Gaps = 22/313 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y+ +++    + +  +  +L+ QM +    P+V TYN  +    R  R      V
Sbjct: 480 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 539

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDY 173
            E ++  G +  + T+ +L+  +      + A  + + M  R  R +   +     L   
Sbjct: 540 YEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNA--VTYNCLLHGL 597

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E++   D+  E+F K++    +P             +   YTTL+ G+ N G++   V
Sbjct: 598 CKESK--PDEAHELFRKMVERGCDP-------------DRVTYTTLLYGFCNVGKIEQAV 642

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +  +   PD V Y  ++    +AG    A+Q+   M       + +++NI++
Sbjct: 643 EVFDEMVSKGHD---PDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMI 699

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G  +  ++D A E+   M  D    PD+V+YN LI G       + A+  F E+    +
Sbjct: 700 DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKL 759

Query: 354 APTKISYTTLMKA 366
           +P   ++  L++A
Sbjct: 760 SPDPHAFNVLLEA 772



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/434 (19%), Positives = 182/434 (41%), Gaps = 50/434 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K D   YN +L+        K+  Q+F++M   G  P+  TY V+++           V 
Sbjct: 126 KHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVR 185

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFG-----------DLE------------------ 145
               +++ G     T +Q +       G           DLE                  
Sbjct: 186 FFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFV 245

Query: 146 IAETIVQAMREGRRDV---CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202
           I +  ++A +  R  V   CK   +  +  Y        ++ DE F+  L  ++   S+ 
Sbjct: 246 IQDKAIEASKLFRAMVKSGCK--PDATIYSYMVLAHCKLENLDEAFKLFLEMAVE--SKA 301

Query: 203 PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
           PL       N+  +T  + G    G++         M ++  ++S P    Y  ++  L+
Sbjct: 302 PL-------NNVAWTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQP---VYDMLIRLLI 350

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           ++G +D+A +   E+    +  +  T + +++  C+  ++D A  LL  M       PD+
Sbjct: 351 ESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYC-PDM 409

Query: 323 VSYNILIDGFILIDDSAGALTFFNEM--RARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            ++++LI+     D    A  F   M  +    + +  SY +L+ +   + +   A  +F
Sbjct: 410 ATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIF 469

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             M+ +     D+V++++L++G+C++  +  A+++ ++M +    PNV TY +  NG+  
Sbjct: 470 STMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMR 529

Query: 441 ARKPGEALLLWKEI 454
             +  +A  +++E+
Sbjct: 530 KGRIADAQGVYEEM 543



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 121/283 (42%), Gaps = 55/283 (19%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +   PD   Y+ +++  +   K  +  +LF+ M   G +P+ +TYN ++    + S+ 
Sbjct: 544 VAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKP 603

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +  +++E G      T+ +L+  +   G +E      QA+               
Sbjct: 604 DEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIE------QAV--------------- 642

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                           EVF++             ++ K   P+   Y  L+KG+   G+ 
Sbjct: 643 ----------------EVFDE-------------MVSKGHDPDVVAYNCLLKGFFRAGKP 673

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRIT 288
            +  ++   M  ++     PD V++  ++  L KA  +D A +V   M +  G   + +T
Sbjct: 674 GEAKQLFQVMVSRQ---CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVT 730

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           YN L+ G C + ++ +A ++ +E+ D  K+ PD  ++N+L++ 
Sbjct: 731 YNSLIFGLCGEQRLSEAMKVFKEI-DRLKLSPDPHAFNVLLEA 772



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 35/215 (16%)

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q  N  H D  TY  ++  L++   + +A QV  +M   GV  N  TY +L++  C +  
Sbjct: 121 QARNFKH-DVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERN 179

Query: 302 IDKAKELLREMAD----------------------------------DAKIEPDVVSYNI 327
            D+A     EM D                                  + ++  +++    
Sbjct: 180 SDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKA 239

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+  F++ D +  A   F  M   G  P    Y+ ++ A         A K+F EM  + 
Sbjct: 240 LLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVES 299

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           +  ++ VAW   + G C+ G +E+A      M+E+
Sbjct: 300 KAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQES 334



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           D   ALTFF  ++AR       +Y  L+         K A +VF++M+    V  +   +
Sbjct: 109 DGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVP-NGFTY 167

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
            +LV+  C     +EA R    M + GF P+   Y  +   +    K GE
Sbjct: 168 AVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGE 217


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 130/556 (23%), Positives = 232/556 (41%), Gaps = 78/556 (14%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G  P  ++++ V+S LA +  D   +++ L+  +V R R            P T  + 
Sbjct: 132 RFGVQPSFRSYNVVLSVLARA--DCHADALALYRRMVHRDR----------VPPTTFTFG 179

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILE 121
               A   LG+  + L L   M   G  PD + Y  +I  LC +         + E +L 
Sbjct: 180 VAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLL- 238

Query: 122 MGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG-----------RRDVCKI----- 164
           MG    + TF  +V    G G + E A  + + M +G            + +C++     
Sbjct: 239 MGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADE 298

Query: 165 -------IRELDLEDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
                  + EL++  +++       EG   +  E++E +               K   P+
Sbjct: 299 ARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGL-------------KGCQPD 345

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           +  Y+ LM G    GR+   VR+L   R  E     P+ VTYT V+ +  K G  D  R 
Sbjct: 346 AHTYSILMHGLCKLGRIGSAVRLL---REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRA 402

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +L EM+  G+  N   YN ++   C+  ++D+A  L++EM       PD+ SYN +I   
Sbjct: 403 LLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQG-CNPDICSYNTIIYHL 461

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
              +    A   F  +   G+    I+Y T++ A     + + A ++  EM+      +D
Sbjct: 462 CNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH-GCSLD 520

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +V++N L++  C+ G V+ +  ++E M E G  PN  +Y  L + +   R+  +AL    
Sbjct: 521 VVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL---- 576

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                 E+ K+ +N        L PD    + L +   +  +   AL ++  +    + P
Sbjct: 577 ------ELSKQMLNQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHP 624

Query: 513 NKTKYKKIYVEMHSRM 528
           +   Y  I +  H ++
Sbjct: 625 DIITY-NILISWHCKV 639



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 191/467 (40%), Gaps = 68/467 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G +P    + TV+  L   G  G  E+  L + +           ++     D   
Sbjct: 201 MARHGCVPDAVLYQTVIHALCDQG--GVTEAATLLNEM-----------LLMGCAADVNT 247

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++ V+     LG+ ++  +L D+M   G  P V+TY  +++   R  +      +L R+ 
Sbjct: 248 FDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVP 307

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--------------------REGR-R 159
           E+ + L    F +++   +  G L  A  + + M                    + GR  
Sbjct: 308 ELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIG 363

Query: 160 DVCKIIRELDLEDYSSE------------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPK 207
              +++RE++ + ++                G  DD   + E++               K
Sbjct: 364 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSA-------------K 410

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
               NS+ Y  ++     +GR+ + + ++  MR Q  N   PD  +Y T++  L     M
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCN---PDICSYNTIIYHLCNNEQM 467

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           + A  +   +   GV AN ITYN ++    +  +   A  L +EM        DVVSYN 
Sbjct: 468 EEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-CSLDVVSYNG 526

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI       +   +L    EM  +GI P  +SY  L+       + + A ++  +ML + 
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML-NQ 585

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            +  DIV +N L+ G C+MG +  A  ++E++     +P++ TY  L
Sbjct: 586 GLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNIL 632



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 58/327 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G+ P+V  ++ V+     +G         ++D     + + S   +  +S+     
Sbjct: 372 MEKKGFAPNVVTYTIVLHSFCKNG---------MWDDTRALLEEMSAKGLTLNSQ----G 418

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++ A    G+  + + L  +M   G  PD+ +YN +I       +      + E +L
Sbjct: 419 YNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLL 478

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-RDVCKIIRELDLEDYSSE--- 176
           E G+     T+ +++ A                +R+GR +D  ++ +E+ L   S +   
Sbjct: 479 EEGVVANGITYNTIIHAL---------------LRDGRWQDAVRLAKEMILHGCSLDVVS 523

Query: 177 ---------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                     +G+ D    + E++    I P             N+  Y  L+     E 
Sbjct: 524 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKP-------------NNVSYNILISELCKER 570

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           RV D + +   M  Q      PD VTY T+++ L K G M  A  +L ++    V  + I
Sbjct: 571 RVRDALELSKQMLNQ---GLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDII 627

Query: 288 TYNILLKGYCQQLQIDKAKELL-REMA 313
           TYNIL+  +C+   +D A  LL R MA
Sbjct: 628 TYNILISWHCKVRLLDDAAMLLNRAMA 654



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 106/279 (37%), Gaps = 25/279 (8%)

Query: 269 RARQVLAEMTR-IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           RA  +L ++ R  GV  +  +YN++L    +      A  L R M    ++ P   ++ +
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
                  +  +  AL     M   G  P  + Y T++ A         A  + +EML   
Sbjct: 181 AARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLM- 239

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               D+  ++ +V G C +G V EA R+++RM   G  P V TYG L  G+   R+  EA
Sbjct: 240 GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA 299

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             +   + E   V                    L + +   C+      +A E+   M  
Sbjct: 300 RAMLGRVPELNVV--------------------LFNTVIGGCLAEGKLAEATELYETMGL 339

Query: 508 HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERK 546
            G  P+   Y    + MH      +  S  R  R  E+K
Sbjct: 340 KGCQPDAHTYS---ILMHGLCKLGRIGSAVRLLREMEKK 375


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 207/458 (45%), Gaps = 32/458 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P   +++ V+ RL    D+   +++ L  ++ K      +  + S   PD   
Sbjct: 70  MTELGCVPDAFSYAIVLKRLC--DDNRSQQALDLLRMMAK------EEGVCS---PDVVT 118

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V++     GK  K   L+ +M + G  PDV+T+N +I    +A        +L +++
Sbjct: 119 YNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMV 178

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S++  Y   G  E A  + + M  GR  +  I+      D S    G 
Sbjct: 179 DNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREM-TGRGLIPDIVSWNSFMD-SLCKHGR 236

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  E+F  +               K   PN   Y  L+ GY  EG  +D +     M+
Sbjct: 237 SKEAAEIFYSMAA-------------KGHRPNIVTYGILLHGYATEGCFADMMSFFNTMK 283

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               +    + + +T ++ A  K G MD A  +L+EM   G+  +  TY+ L+   C+  
Sbjct: 284 ---GDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMG 340

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++  A +   +M     ++P+ V Y+ LI GF    D   A     EM   GI    I++
Sbjct: 341 RLADAVDKFNQMIGTG-VQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAF 399

Query: 361 -TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
             +++ +     +   A+ +FD +++D   + DI+ +N L++GYC +G + +A  +++ M
Sbjct: 400 FNSIVHSICKEGRVMDAHHIFD-LVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAM 458

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              G  P+  TY +L NG   + +  + L L++E+ ++
Sbjct: 459 ISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDK 496



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 184/433 (42%), Gaps = 34/433 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P + +W++ +  L   G     E+ ++F  +  +             +P+   
Sbjct: 212 MTGRGLIPDIVSWNSFMDSLCKHGRSK--EAAEIFYSMAAK-----------GHRPNIVT 258

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+  A  G     +  F+ M   G   + L + ++I   A+       + +L  + 
Sbjct: 259 YGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQ 318

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
             G++  + T+ +L++A    G L +  +   Q +  G +    +   L ++ + +   G
Sbjct: 319 GQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSL-IQGFCTH--G 375

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D     E+  +++ N I         P+   PN   + +++     EGRV D   +   +
Sbjct: 376 DLVKAKELVYEMMNNGI---------PR---PNIAFFNSIVHSICKEGRVMDAHHIFDLV 423

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +   D     D + + T++      G M +A  VL  M   G+  +  TYN L+ GY + 
Sbjct: 424 K---DIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKS 480

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +ID    L REM+D  KI+P  V+YNI++DG      +  A    +EM   G   +  +
Sbjct: 481 GRIDDGLNLFREMSDK-KIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPT 539

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  ++K    ++    A  +F + L    VK +I   N ++     +   EEAK +   +
Sbjct: 540 YNIILKGLCRNNCTDEAIVMFQK-LCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAI 598

Query: 420 KENGFYPNVATYG 432
            ++G  PN +TYG
Sbjct: 599 SDSGLVPNASTYG 611



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 181/410 (44%), Gaps = 37/410 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  ++N+ +++    G+ K+  ++F  M   G +P+++TY +++   A       ++  
Sbjct: 219 PDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSF 278

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYS 174
              +   GI      F  L+ AY   G ++ A  I+  M+ +G           D+  YS
Sbjct: 279 FNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSP--------DVFTYS 330

Query: 175 SE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +        G   D  + F +++   + P             N+ +Y +L++G+   G +
Sbjct: 331 TLISALCRMGRLADAVDKFNQMIGTGVQP-------------NTVVYHSLIQGFCTHGDL 377

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
                ++  M    +    P+   + ++V ++ K G +  A  +   +  IG  ++ I +
Sbjct: 378 VKAKELVYEM--MNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMF 435

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFN 346
           N L+ GYC   ++ KA  +L  M   A I PD  +YN L++G+     IDD    L  F 
Sbjct: 436 NTLIDGYCLVGEMGKAFSVLDAMIS-AGIGPDTFTYNTLVNGYFKSGRIDD---GLNLFR 491

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  + I PT ++Y  ++     + +   A K+  EM+      V +  +N++++G CR 
Sbjct: 492 EMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMI-GCGTTVSLPTYNIILKGLCRN 550

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              +EA  + +++       N+ T  ++ N +   ++  EA  L+  I +
Sbjct: 551 NCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISD 600



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 107/477 (22%), Positives = 200/477 (41%), Gaps = 54/477 (11%)

Query: 55  KPDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL 112
           K D  A N VL   C           L  +M E G  PD  +Y +++K LC     +  L
Sbjct: 40  KADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQAL 99

Query: 113 VFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
             +     E G+  C   + T+ +++  +   G +  A  +   M + +  V  ++    
Sbjct: 100 DLLRMMAKEEGV--CSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQ-QGFVPDVVTHNS 156

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           + +   +     D+ + +  +++ N +              PN   YT+++ GY   GR 
Sbjct: 157 IINALCKARA-VDNAELLLRQMVDNGV-------------PPNKVTYTSMIHGYSTLGRW 202

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            +  +M    R        PD V++ + + +L K G    A ++   M   G   N +TY
Sbjct: 203 EEATKMF---REMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTY 259

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFN 346
            ILL GY  +            M  D  I  + + + ILID +    ++D+   A+   +
Sbjct: 260 GILLHGYATEGCFADMMSFFNTMKGDG-IVANCLVFTILIDAYAKRGMMDE---AMLILS 315

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKV--FDEMLRDPRVKVDIVAWNMLVEGYC 404
           EM+ +G++P   +Y+TL+   AL    +LA+ V  F++M+    V+ + V ++ L++G+C
Sbjct: 316 EMQGQGLSPDVFTYSTLIS--ALCRMGRLADAVDKFNQMI-GTGVQPNTVVYHSLIQGFC 372

Query: 405 RMGLVEEAKRIIERMKENGF-YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
             G + +AK ++  M  NG   PN+A + S+ + I    +  +A  ++  +K+  E    
Sbjct: 373 THGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGE---- 428

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                       + D  + + L D         KA  ++  M   GI P+   Y  +
Sbjct: 429 ------------RSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTL 473



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 140/348 (40%), Gaps = 25/348 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   +  +++A A  G   + + +  +M   G  PDV TY+ +I    R  R    V   
Sbjct: 290 NCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKF 349

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREG------------RRDVCK 163
            +++  G+      + SL+  +   GDL  A E + + M  G               +CK
Sbjct: 350 NQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICK 409

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRI 215
             R +D        +   +  D +    L +      E          ++     P++  
Sbjct: 410 EGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFT 469

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+ GY   GR+ D + +    R   D    P  VTY  ++  L +AG    A+++L 
Sbjct: 470 YNTLVNGYFKSGRIDDGLNLF---REMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLH 526

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM   G   +  TYNI+LKG C+    D+A  + +++     ++ ++ + N +I+    +
Sbjct: 527 EMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLC-TMNVKFNITTLNTMINSMYTV 585

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
                A   F+ +   G+ P   +Y  +++        + A+ +F  M
Sbjct: 586 QRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSM 633



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 89/274 (32%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA-KE 307
           P   TY  V++   +A   +        + R G+ A++   N +LK  C   + D A K 
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           LLR M +                                     G  P   SY  ++K  
Sbjct: 66  LLRRMTE------------------------------------LGCVPDAFSYAIVLKRL 89

Query: 368 ALSSQPKLANKVFDEMLRDPRV-KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
              ++ + A  +   M ++  V   D+V +N ++ G+ + G + +A  +   M + GF P
Sbjct: 90  CDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVP 149

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           +V T+ S+ N +  AR    A LL ++                                 
Sbjct: 150 DVVTHNSIINALCKARAVDNAELLLRQ--------------------------------- 176

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                             M ++G+PPNK  Y  +
Sbjct: 177 ------------------MVDNGVPPNKVTYTSM 192



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 47  DPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA 106
           D  I +   PDT  YN ++N     G+    L LF +M +   KP  +TYN+++    RA
Sbjct: 456 DAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRA 515

Query: 107 SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
            R      +L  ++  G T+ + T+  ++         +  E IV   +    +V   I 
Sbjct: 516 GRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTD--EAIVMFQKLCTMNVKFNIT 573

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
            L+    S       ++  ++F  +        S+  L+     PN+  Y  +++  + E
Sbjct: 574 TLNTMINSMYTVQRREEAKDLFSAI--------SDSGLV-----PNASTYGIMIRNLLKE 620

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           G V +   M  +M   E +   P        +  L++ G + +A   ++++
Sbjct: 621 GSVEEADNMFSSM---EKSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKV 668


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 184/380 (48%), Gaps = 23/380 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
           +P+   +N V+NA    GK  K   + + M  +G  P+V++YN +I   C       +  
Sbjct: 220 QPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYK 279

Query: 114 --FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              VL+ ++E  ++  +TTF  L+  +    +L  +  + + M +  +DV     + ++ 
Sbjct: 280 ADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLD--QDV-----KPNVI 332

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y+S   G   +  ++ E +       S    ++     PN   Y  L+ G+     + +
Sbjct: 333 SYNSLING-LCNGGKISEAI-------SMRDKMVSAGVQPNLITYNALINGFCKNDMLKE 384

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + M G+++ Q    + P    Y  ++ A  K G +D    +  EM R G+  +  TYN 
Sbjct: 385 ALDMFGSVKGQ---GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G C+   I+ AK+L  ++   +K  PD+V+++IL++G+    +S  A     EM   
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLT--SKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P  ++Y  +MK +      K A  +  +M ++ R+++++ ++N+L++GY + G +E+
Sbjct: 500 GLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559

Query: 412 AKRIIERMKENGFYPNVATY 431
           A  ++  M E G  PN  TY
Sbjct: 560 ANMLLNEMLEKGLVPNRITY 579



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 164/365 (44%), Gaps = 59/365 (16%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           LM   + E R +D   +   M R++     P+  T+  V++AL K G M++AR V+ +M 
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRK---IQPNVFTFNVVINALCKTGKMNKARDVMEDMK 250

Query: 279 RIGVPANRITYNILLKGYCQ---QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
             G   N ++YN L+ GYC+     ++ KA  +L+EM ++  + P++ ++NILIDGF   
Sbjct: 251 VYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVEN-DVSPNLTTFNILIDGFWKD 309

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLM-----------------KAFALSSQPKLA-- 376
           D+  G++  F EM  + + P  ISY +L+                 K  +   QP L   
Sbjct: 310 DNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITY 369

Query: 377 NKVFDEMLRDPRVK--VDIVA-------------WNMLVEGYCRMGLVEEAKRIIERMKE 421
           N + +   ++  +K  +D+               +NML++ YC++G +++   + E M+ 
Sbjct: 370 NALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  P+V TY  L  G+        A  L+ ++  +      G+           PD   
Sbjct: 430 EGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK------GL-----------PDLVT 472

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDR 541
              L +   R    RKA  ++  M + G+ P    Y  I ++ + +    K A+  R   
Sbjct: 473 FHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTY-NIVMKGYCKEGNLKAATNMRTQM 531

Query: 542 RRERK 546
            +ER+
Sbjct: 532 EKERR 536



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 131/329 (39%), Gaps = 69/329 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML     P+V +++++++ L   G        K+ + +  R     D  + +  +P+   
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGG--------KISEAISMR-----DKMVSAGVQPNLIT 368

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N        K+ L +F  +   GA P    YN++I    +  +      + E + 
Sbjct: 369 YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+  L+A     G++E A+ +                              
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLF----------------------------- 459

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               D++  K LP+ +                   +  LM+GY  +G       +L  M 
Sbjct: 460 ----DQLTSKGLPDLVT------------------FHILMEGYCRKGESRKAAMLLKEMS 497

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYNILLKGYCQQ 299
           +       P H+TY  V+    K G++  A  +  +M +   +  N  +YN+LL+GY Q+
Sbjct: 498 KM---GLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQK 554

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNIL 328
            +++ A  LL EM +   + P+ ++Y I+
Sbjct: 555 GKLEDANMLLNEMLEKGLV-PNRITYEIV 582


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 187/430 (43%), Gaps = 68/430 (15%)

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
           A P V TY+++I  C RA R  L       +L  G+                  D+ +  
Sbjct: 99  ALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMK----------------ADVIVVS 142

Query: 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
           ++++ + + +R                     D+  D +F ++          P L    
Sbjct: 143 SLLRGLCDAKRT--------------------DEAVDVLFHRM----------PEL---G 169

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             P++  Y+T++K   ++GR    + +L  M  ++      + V Y+TVV  L K G + 
Sbjct: 170 CVPDAISYSTVLKSVCDDGRSQWALDIL-RMAVKQGGGCPCNVVVYSTVVHGLFKEGKVG 228

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +  EMT+ GVP N +TYN ++   C+   +DKA+ +LR+M  +  ++PD V+YN L
Sbjct: 229 EACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNG-VQPDNVTYNTL 287

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G+  +     A+  F EM +RG+ P  ++ +T +       + + A + FD ML    
Sbjct: 288 IHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGH 347

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            K++I++++ L+ GY   G + +   +   M  +G  PN   +  L NG +      EA+
Sbjct: 348 -KLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAM 406

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            +++++++R                 L PD     A+     R      A++    M + 
Sbjct: 407 FIFEDMQKR----------------GLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDK 450

Query: 509 GIPPNKTKYK 518
           G+ PN   Y+
Sbjct: 451 GVEPNFAVYQ 460



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 191/455 (41%), Gaps = 34/455 (7%)

Query: 3   RSGYLP-HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           + G  P +V  +STVV  L   G  G  E+  LF  + ++              P+   Y
Sbjct: 203 QGGGCPCNVVVYSTVVHGLFKEGKVG--EACDLFHEMTQQ-----------GVPPNVVTY 249

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N+V++A        K   +  QM   G +PD +TYN +I   +   +    V + + +  
Sbjct: 250 NSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTS 309

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+     T  + VA     G +E A     +M      +  I     L  Y++   G  
Sbjct: 310 RGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATA--GCL 367

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
            D   +F  ++ + I              PN  ++  L+ GY   G V + + +   M++
Sbjct: 368 VDMSNLFNLMVRDGI-------------VPNQHVFNILVNGYAKCGMVREAMFIFEDMQK 414

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +  N   PD +TY  V+ A  + GSMD A      M   GV  N   Y  L++G+C    
Sbjct: 415 RGLN---PDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGD 471

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + KA+EL+ E+ +   + P ++S+  LI+          A   F+ +   G       +T
Sbjct: 472 LVKAEELVYEIRNKG-LGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFT 530

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +L+  + L  +   A +V D M+    ++ DIV +  LV G C+ G +++   +   +  
Sbjct: 531 SLIDGYCLIGKMSEAFRVHDAMV-SVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLH 589

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            G  P   TYG + +G+  A +   A  +++E+ E
Sbjct: 590 KGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIE 624



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 176/431 (40%), Gaps = 68/431 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G+  ++ ++ST++   A +G    V+   LF+++V+         IV    P+   
Sbjct: 342 MLAKGHKLNIISYSTLLHGYATAG--CLVDMSNLFNLMVR-------DGIV----PNQHV 388

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++N  A  G  ++ + +F+ M + G  PDVLTY  +I    R       +     ++
Sbjct: 389 FNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMI 448

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+      +Q L+  +   GDL  AE +V  +R                         
Sbjct: 449 DKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRN------------------------ 484

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K   P    + +L+     EGRV +  R+   + 
Sbjct: 485 --------------------------KGLGPCILSFASLINHLCKEGRVFEAQRIFDMII 518

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R  + A   D   +T+++      G M  A +V   M  +G+  + +TY  L+ G C+  
Sbjct: 519 RTGEKA---DVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNG 575

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID    L RE+     ++P   +Y I++DG      +A A   F EM   GIA T  +Y
Sbjct: 576 RIDDGLILFRELLHKG-VKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTY 634

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L+     ++  + A  VF + L    VK DIV  N+++    +    EEA+ +   + 
Sbjct: 635 SILLTGLCRNNCTEEAITVFQK-LCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIP 693

Query: 421 ENGFYPNVATY 431
           + G  P V TY
Sbjct: 694 DYGLVPTVQTY 704


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/517 (23%), Positives = 213/517 (41%), Gaps = 87/517 (16%)

Query: 4   SGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           +G  P+V A++ V+  L  +G  +DG              ++ F D    S   P    Y
Sbjct: 392 AGCSPNVVAYTAVIDGLLKAGRIEDG--------------LKNFEDMS-GSSCVPTRTTY 436

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
             V++            ++F+QM + G  PD +TY  +I   ++AS+      +L+ +L 
Sbjct: 437 TVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLT 496

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G      T+ S+V  +     +  A+ ++  MRE                         
Sbjct: 497 KGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRE------------------------- 531

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                              EP L          I+T+L+  Y+++GR  +  ++L  M  
Sbjct: 532 ----------------RGCEPGLF---------IFTSLLSYYLSKGRAEEAYQVLTEMTA 566

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +      PD + YT+++  L   G +  AR V   M   G   + +TY  +++ + +   
Sbjct: 567 R---GCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGN 623

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ++ A E+L  MA    + PD  +YN L+DG++ ++    A   ++ M A GI P  +++ 
Sbjct: 624 VEAAGEILELMAKSG-VGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFN 682

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            LM       +   A  +F EML    V   +V++ +L++G  + G V EA    + M +
Sbjct: 683 VLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMID 742

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  P   TY SL   ++ A +  EA    K++ E  ++ K GVN          PD + 
Sbjct: 743 RGIIPECHTYTSLIYSLAKAGRIPEA----KKLVE--DMVKLGVN----------PDVQA 786

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
             AL    + ++    A ++   M + G  PN+  YK
Sbjct: 787 YSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYK 823



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 229/537 (42%), Gaps = 80/537 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  GY P+++   +++  L  +G     E+ +++  VV +         V+ S+    A
Sbjct: 220 MIERGYEPYLEVQDSLIFALCKAGKVD--EANEIYQTVVAKK--------VATSR---VA 266

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++    LG+    L+L  QM E    PD+ TYN+++   +RA+R       L+  L
Sbjct: 267 YNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANR-------LDDAL 319

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRE-LDLEDYSSEN 177
           E+   L     +   A Y          TI+Q + + +R  +      E LD+  Y++  
Sbjct: 320 ELFKLLSSYGCKPNAATYT---------TIIQGLYDAQRMEEAKAFFDEALDVISYTTVI 370

Query: 178 EG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           +G       D+  E+FEKL     +P             N   YT ++ G +  GR+ D 
Sbjct: 371 KGLADSKRIDEACELFEKLKTAGCSP-------------NVVAYTAVIDGLLKAGRIEDG 417

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           ++    M     ++  P   TYT V+  L KA  +  A +V  +M + G   + ITY  L
Sbjct: 418 LKNFEDM---SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTL 474

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+ +  ++D+A++LL  M      EP  V+Y  ++ GF  +D    A     +MR RG
Sbjct: 475 IDGFSKASKMDEARKLLDVMLTKGP-EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG 533

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P    +T+L+  +    + + A +V  EM        D++ +  L++     G V EA
Sbjct: 534 CEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARG-CAPDVILYTSLIDLLFSTGRVPEA 592

Query: 413 KRIIERMKENGFYPNVATYGSLANGISL---ARKPGEALLLWKEIKERCEVKKEGVNADS 469
           + + + M E G  P+  TYG++    S        GE L L         + K GV    
Sbjct: 593 RHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILEL---------MAKSGVG--- 640

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
                  PD    ++L D  V+     +A  +   M   GI PN   +    V MH 
Sbjct: 641 -------PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFN---VLMHG 687



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 124/555 (22%), Positives = 236/555 (42%), Gaps = 61/555 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N VLN      K  K ++LF +M   G +P +++YN +I   A   +       
Sbjct: 18  PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKF 77

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYS 174
              +++ G    +  F +L+  +   G  ++   ++ QA++  R DV   +    +  Y 
Sbjct: 78  FNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDV--FLYTSVIHGYC 135

Query: 175 SENEGDDDDDDEVFEKLL-----PNS------INPSSEPPLLPKTFAPNSRI-------- 215
               GD D   ++ E++L     P++      I+P  +   + + +    R+        
Sbjct: 136 --KAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGD 193

Query: 216 ---YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              + TL++   N G++ +   +    R   +    P      +++ AL KAG +D A +
Sbjct: 194 YVTFMTLIEALSNHGKLDEACELY---REMIERGYEPYLEVQDSLIFALCKAGKVDEANE 250

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +   +    V  +R+ YN L+ GYC+  ++D   +LL +M +     PD+ +YNIL+ GF
Sbjct: 251 IYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF-PDIQTYNILVAGF 309

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
              +    AL  F  + + G  P   +YTT+++    + + + A   FDE L       D
Sbjct: 310 SRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEAL-------D 362

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           ++++  +++G      ++EA  + E++K  G  PNV  Y ++ +G+  A +  + L  ++
Sbjct: 363 VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFE 422

Query: 453 EIK-ERC-------EVKKEGVNADSDLPPPLK-----------PDEELLDALADICVRAA 493
           ++    C        V  +G+     LP   K           PD      L D   +A+
Sbjct: 423 DMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 482

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFK 553
              +A +++  M   G  P    Y  I V    ++      ++A++   + R+R  E   
Sbjct: 483 KMDEARKLLDVMLTKGPEPTAVTYGSI-VHGFCKL---DMINEAKEVIAQMRERGCEPGL 538

Query: 554 FWLGLPNSYYGSEWR 568
           F      SYY S+ R
Sbjct: 539 FIFTSLLSYYLSKGR 553



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 124/586 (21%), Positives = 237/586 (40%), Gaps = 75/586 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVR--------------KFS 46
           M+ +G  P V A++T++     +G   P     L +  +KR R              K  
Sbjct: 81  MIDNGCEPDVIAFTTLIHGFCKAGQ--PQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAG 138

Query: 47  DPD---------IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           D D         + +   PD AAY  +++    LG+  +  +LF++M + G   D +T+ 
Sbjct: 139 DLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFM 198

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I+  +   +      +   ++E G    +    SL+ A    G ++ A  I Q +   
Sbjct: 199 TLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAK 258

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
           +    ++     ++ Y      DD        KLL   +   + P +         + Y 
Sbjct: 259 KVATSRVAYNSLMDGYCKLGRVDDG------LKLLLQMVECDNFPDI---------QTYN 303

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ G+    R+ D + +    +        P+  TYTT++  L  A  M+ A+    E 
Sbjct: 304 ILVAGFSRANRLDDALELF---KLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEA 360

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
             +      I+Y  ++KG     +ID+A EL  ++   A   P+VV+Y  +IDG +    
Sbjct: 361 LDV------ISYTTVIKGLADSKRIDEACELFEKL-KTAGCSPNVVAYTAVIDGLLKAGR 413

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
               L  F +M      PT+ +YT ++     +     A KVF++M++   V  D + + 
Sbjct: 414 IEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVP-DTITYT 472

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            L++G+ +   ++EA+++++ M   G  P   TYGS+ +G        EA  +  +++ER
Sbjct: 473 TLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRER 532

Query: 458 -CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
            CE                 P   +  +L    +      +A +++  M   G  P+   
Sbjct: 533 GCE-----------------PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVI- 574

Query: 517 YKKIYVEMHSRMFTSKHASQARQ--DRRRERKRAAEAFKFWLGLPN 560
              +Y  +   +F++    +AR   D   E+  A +A  +   + N
Sbjct: 575 ---LYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQN 617



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 3/190 (1%)

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           M+ A   L EM   G+  + +  NI+L G C+  +IDKA EL  EM      EP +VSYN
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPS-MGCEPTIVSYN 59

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +I G   ID    A  FFN M   G  P  I++TTL+  F  + QP++ + + ++ L+ 
Sbjct: 60  TVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK- 118

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
            R + D+  +  ++ GYC+ G ++   +I+E M   G  P+ A Y  L + +    +  E
Sbjct: 119 -RFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDE 177

Query: 447 ALLLWKEIKE 456
           A  L++ +++
Sbjct: 178 AYELFERMRK 187



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 125/332 (37%), Gaps = 66/332 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V  +++++  L ++G              V   R   D  I     PD   
Sbjct: 564 MTARGCAPDVILYTSLIDLLFSTGR-------------VPEARHVFDSMIEKGCAPDALT 610

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++   + +G  +   ++ + M + G  PD   YN ++    +  R      V +R++
Sbjct: 611 YGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMV 670

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI     TF  L+      G  + A ++ + M E                        
Sbjct: 671 ASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE------------------------ 706

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               DEV              PP L          YT L+ G    GRVS+       M 
Sbjct: 707 ---KDEV--------------PPTLVS--------YTILIDGLGKAGRVSEAFSQFQEMI 741

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              D    P+  TYT+++ +L KAG +  A++++ +M ++GV  +   Y+ L+ G     
Sbjct: 742 ---DRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSS 798

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            +D A ++ +EM       P+ V+Y +L  GF
Sbjct: 799 MVDTAWDVFQEMMKRG-CAPNEVTYKVLRRGF 829



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 29/232 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M +SG  P   A+++++        DG V+  +     V +     D  + S  KP+   
Sbjct: 634 MAKSGVGPDCFAYNSLM--------DGYVKLER-----VDQAFGVYDRMVASGIKPNAVT 680

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFG-AKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           +N +++     GK  +   LF +M E     P +++Y ++I    +A R        + +
Sbjct: 681 FNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEM 740

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++ GI     T+ SL+ +    G +  A+ +V+       D+ K+    D++ YS+   G
Sbjct: 741 IDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE-------DMVKLGVNPDVQAYSALITG 793

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             D        ++  + +   E  ++ +  APN   Y  L +G+   GR  D
Sbjct: 794 LID------SSMVDTAWDVFQE--MMKRGCAPNEVTYKVLRRGFRAAGRALD 837


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 5/240 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN   +  ++ GY  E +  D V  L  M +   N S PD+VTY T++  L K G + 
Sbjct: 204 IVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKY--NCS-PDNVTYNTILDTLCKKGRLG 260

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            AR +L +M   G+  NR TYNIL+ GYC+   + +A  ++  M  +  + PDV +YN+L
Sbjct: 261 DARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQN-NLLPDVWTYNML 319

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G         A    +EM    + P  +SY TL+      S+   A K+ +EM  +  
Sbjct: 320 INGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEM-SEKG 378

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           VK + V  N++V+ YC+ G +++A   I +M+E+GF P+  TY +L NG   A   GEA 
Sbjct: 379 VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAF 438



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 187/459 (40%), Gaps = 71/459 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++N   N G+ ++  +L D+M      PDV++YN +I  C   S+      +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE + E G+     T   +V  Y   G ++ A   +  M E                   
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEES------------------ 412

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                            F+P+   Y TL+ GY   G + +  R 
Sbjct: 413 --------------------------------GFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M R+       D VT  T++  L +   ++ A ++L+   + G   + ++Y  L+ G
Sbjct: 441 MDEMGRKN---MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVG 497

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +   +D+A +L  EM +  +I P  V+YN +I G      +  A++  NE+   G+ P
Sbjct: 498 YFKDGNVDRALKLWDEMKE-KEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLP 556

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            + +Y T++  +      + A +  ++M+ +   K D+   N+L+ G C  G++E+A ++
Sbjct: 557 DETTYNTILHGYCREGDVEKAFQFHNKMVENS-FKPDVFTCNILLRGLCMEGVLEKALKL 615

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
                  G   +  TY +L   +    +  +A  L  E++E+                 L
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK----------------EL 659

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
            PD    +A+      +   R+A E ++ M E G  P++
Sbjct: 660 GPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQ 698



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/489 (22%), Positives = 209/489 (42%), Gaps = 48/489 (9%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           I+  + P  A  +  + A    G+P    Q+F +M     +P++LT N ++    R    
Sbjct: 127 ILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSS 186

Query: 110 HLLVFVLERI---LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
           H + F  E     +++GI   + TF  ++  Y      + A   +  M +       +  
Sbjct: 187 HSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTY 246

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
              L+    +    D  D      LL +         +  +   PN   Y  L+ GY   
Sbjct: 247 NTILDTLCKKGRLGDARD------LLMD---------MKSRGLLPNRNTYNILVYGYCKM 291

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G + +   ++  M +   N   PD  TY  +++ L   G ++ A ++  EM  + +  + 
Sbjct: 292 GWLKEAANVIELMTQ---NNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDV 348

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL---IDDSAGALT 343
           ++YN L+ G  +  +I +A +LL EM++   ++P+ V++NI++  +     +DD++  +T
Sbjct: 349 VSYNTLINGCLEWSKISEAFKLLEEMSEKG-VKPNAVTHNIMVKWYCKEGKMDDASNTIT 407

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
              +M   G +P  ++Y TL+  +  +     A +  DEM R   +K+D V  N ++   
Sbjct: 408 ---KMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR-KNMKMDSVTLNTILRTL 463

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER------ 457
           CR   +EEA +++   ++ G++ +  +YG+L  G         AL LW E+KE+      
Sbjct: 464 CREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPST 523

Query: 458 ------------CEVKKEGVNADSD-LPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
                       C   ++ ++  ++ L   L PDE   + +     R     KA +    
Sbjct: 524 VTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNK 583

Query: 505 MEEHGIPPN 513
           M E+   P+
Sbjct: 584 MVENSFKPD 592



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/411 (19%), Positives = 152/411 (36%), Gaps = 97/411 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDG--------------PVESVKLFDVV--VKRVRK 44
           M  SG+ P    ++T+++    +G+ G               ++SV L  ++  + R +K
Sbjct: 409 MEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKK 468

Query: 45  FSDP-DIVSDSKP-----DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             +   ++S ++      D  +Y  ++      G   + L+L+D+M E    P  +TYN 
Sbjct: 469 LEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNC 528

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I    +  +    +  L  +LE G+    TT+ +++  Y   GD+E A           
Sbjct: 529 IIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAF---------- 578

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                                      +   K++ NS             F P+      
Sbjct: 579 ---------------------------QFHNKMVENS-------------FKPDVFTCNI 598

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L++G   EG +   +++      +       D VTY T++++L K G +D A  +L+EM 
Sbjct: 599 LLRGLCMEGVLEKALKLFNTWVSK---GKAIDTVTYNTLITSLCKEGRLDDAFNLLSEME 655

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV---------------- 322
              +  +  TYN ++       +I +A+E + +M +   +   V                
Sbjct: 656 EKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSE 715

Query: 323 ------VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
                 V+Y+  I           A+  F E + +GI   K +Y  LM   
Sbjct: 716 ESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 20/315 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  LM   +  GRV D V +    R  +D    PD  ++  V+  + + G + +A +++ 
Sbjct: 216 YNKLMSSLIGRGRVHDVVALFE--RWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVE 273

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   + +T+NI++ G C+  ++ +  E+LR +  D    P+VV++  +I G+   
Sbjct: 274 RMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 333

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+  +N+M A GI P  ++Y  L+  +        A +V+ +M R  R   D+V 
Sbjct: 334 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVT 392

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++GYCR G +++A RI   M ++   PNV T+  + + +    +  EA+ L  E+ 
Sbjct: 393 FSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELN 452

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            R               P + P   + + + D+  +     +A  I   MEE G  P+K 
Sbjct: 453 LR---------------PDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKY 497

Query: 516 KYKKIYVE--MHSRM 528
            Y  + +   M SR+
Sbjct: 498 TYTILIIGYCMKSRI 512



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 179/415 (43%), Gaps = 44/415 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           P   +   ++      G+    LQLFDQM   +G  PD    + ++  C  A+       
Sbjct: 140 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASAT 199

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------RDV 161
           +L +  E G  +    +  L+++ +G G +     + +   + R             + V
Sbjct: 200 LLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGV 259

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           C++              G      E+ E++  N    S           P++  +  ++ 
Sbjct: 260 CRV--------------GQVQKALELVERM--NEFGCS-----------PDTVTHNIIVD 292

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G      VS    +L   R Q D    P+ VT+T+V+S   KAG ++ A  V  +M   G
Sbjct: 293 GLCRTNEVSRGHEVL--RRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 350

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           +  N +TYN+L+ GY +   +  A E+ ++M    +  PDVV+++ LIDG+        A
Sbjct: 351 IMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVTFSSLIDGYCRCGQLDDA 409

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L  +++M    I P   +++ ++ +    ++   A ++ +E+   P +      +N +++
Sbjct: 410 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVID 469

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             C+ G V+EA  I + M+E G  P+  TY  L  G  +  +  EA++ + E+ E
Sbjct: 470 VLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVE 524



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 177/424 (41%), Gaps = 28/424 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD    + ++++C           L  +  EFG + +   YN ++       R H +V 
Sbjct: 175 SPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVA 234

Query: 115 VLERILEMGI-TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           + ER ++  + +  + +F  ++      G ++ A  +V+ M E       +   + ++  
Sbjct: 235 LFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGL 294

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              NE       EV  +L  + +              PN   +T+++ GY   G++ D +
Sbjct: 295 CRTNE--VSRGHEVLRRLQRDGV------------CMPNVVTFTSVISGYCKAGKLEDAM 340

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M     +   P+ VTY  +++   K G +  A +V  +MTR+  P + +T++ L+
Sbjct: 341 AVYNDM---VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLI 397

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR-G 352
            GYC+  Q+D A  +  +MA   +I+P+V +++I+I      + S  A+   NE+  R  
Sbjct: 398 DGYCRCGQLDDALRIWSDMAQH-RIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPD 456

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           IAP    Y  ++       +   AN +   M  +   + D   + +L+ GYC    + EA
Sbjct: 457 IAPQAFIYNPVIDVLCKCGKVDEANLIRKGM-EEKGCRPDKYTYTILIIGYCMKSRISEA 515

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
                 M E G  P+  T     + +  A  P        E+     +   G ++  + P
Sbjct: 516 IMFFHEMVEAGCSPDSITVNCFISCLLKAGMP-------NEVDHVMRLASGGASSIQEFP 568

Query: 473 PPLK 476
            P++
Sbjct: 569 SPVR 572



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 128/316 (40%), Gaps = 20/316 (6%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P +  P++     ++      GR +D +++   M      +  PD    + +VS+   A 
Sbjct: 135 PLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYS--PDARFLSFLVSSCTCAN 192

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D +  +L++ +  G       YN L+     + ++     L      D    PDV S+
Sbjct: 193 LLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSF 252

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N++I G   +     AL     M   G +P  +++  ++     +++    ++V   + R
Sbjct: 253 NVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQR 312

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D     ++V +  ++ GYC+ G +E+A  +   M  +G  PN  TY  L NG       G
Sbjct: 313 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 372

Query: 446 EALLLWKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            A+ +++++ + RC                  PD     +L D   R      AL I + 
Sbjct: 373 SAVEVYQQMTRLRC-----------------PPDVVTFSSLIDGYCRCGQLDDALRIWSD 415

Query: 505 MEEHGIPPNKTKYKKI 520
           M +H I PN   +  I
Sbjct: 416 MAQHRIQPNVYTFSII 431


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 182/380 (47%), Gaps = 23/380 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
           +P+   +N V+NA    GK  K   + + M  +G  P+V++YN +I   C       +  
Sbjct: 220 QPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYK 279

Query: 114 --FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              VL+ ++E  ++  +TTF  L+  +    +L  +  + + M +  +DV   +   +  
Sbjct: 280 ADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLD--QDVIPNVITYNSL 337

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                N G  ++   + +K++   +              PN   Y +L+ G+   G + +
Sbjct: 338 INGLCNGGKINEAIGMRDKMVSAGVQ-------------PNLITYHSLINGFCKNGMMKE 384

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + M  +++ Q    + P    Y  ++ A  K G +D    +  EM R G+  +  TYN 
Sbjct: 385 ALDMFDSVKGQ---GTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G C+   I+ AK+L  ++ +  K  PD+V+++IL++G+    +S  A     EM   
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTN--KGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKM 499

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P  ++Y  +MK +      K A  +  +M ++ R+++++ ++N+L++GY + G +E+
Sbjct: 500 GLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559

Query: 412 AKRIIERMKENGFYPNVATY 431
           A  ++  M E G  PN  TY
Sbjct: 560 ANMLLNEMLEKGLVPNRITY 579



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 168/350 (48%), Gaps = 29/350 (8%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           LM   + + R +D   +   M R++     P+  T+  V++AL K G M++AR V+ +M 
Sbjct: 194 LMVALLKQNRSADVEYLYKEMIRRK---IQPNVFTFNVVINALCKTGKMNKARDVMEDMK 250

Query: 279 RIGVPANRITYNILLKGYCQ---QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
             G   N ++YN L+ GYC+     ++ KA  +L+EM ++ ++ P++ ++NILIDGF   
Sbjct: 251 VYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVEN-EVSPNLTTFNILIDGFWKD 309

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           D+  G+L  F EM  + + P  I+Y +L+       +   A  + D+M+    V+ +++ 
Sbjct: 310 DNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMV-SAGVQPNLIT 368

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L+ G+C+ G+++EA  + + +K  G  P    Y  L +      K  +   L +E++
Sbjct: 369 YHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428

Query: 456 ERCEVKK--------EGVNADSDLPPPLKPDEELLD-ALADI----------CVRAAFFR 496
               V           G+  + ++    K  ++L +  L D+          C R    R
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGE-SR 487

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERK 546
           KA  ++  M + G+ P    Y  I ++ + +    K A+  R    +ER+
Sbjct: 488 KAAMLLKEMSKMGLKPRHLTY-NIMMKGYCKEGNLKAATNMRTQMEKERR 536



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 162/357 (45%), Gaps = 31/357 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY P+V +++T++      G +G +      D V+K +       + ++  P+   +N +
Sbjct: 253 GYSPNVVSYNTLIDGYCKLGGNGKMYKA---DAVLKEM-------VENEVSPNLTTFNIL 302

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++           L++F +M +    P+V+TYN +I       + +  + + ++++  G+
Sbjct: 303 IDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGV 362

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENEGDDDD 183
              + T+ SL+  +   G ++ A  +  +++ +G R   ++   L ++ Y     G  DD
Sbjct: 363 QPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNML-IDAYCKL--GKIDD 419

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
              + E++    I              P+   Y  L+ G    G +    ++      Q 
Sbjct: 420 GFALKEEMEREGI-------------VPDVGTYNCLIAGLCRNGNIEAAKKLFD----QL 462

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
            N   PD VT+  ++      G   +A  +L EM+++G+    +TYNI++KGYC++  + 
Sbjct: 463 TNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLK 522

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            A  +  +M  + ++  +V SYN+L+ G+        A    NEM  +G+ P +I+Y
Sbjct: 523 AATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 147/358 (41%), Gaps = 53/358 (14%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           L+ +M     +P+V T+NV+I    +  + +    V+E +   G +  + ++ +L+  Y 
Sbjct: 210 LYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYC 269

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             G                                    G     D V ++++ N +   
Sbjct: 270 KLG----------------------------------GNGKMYKADAVLKEMVENEV--- 292

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                     +PN   +  L+ G+  +  +  ++++   M  Q+     P+ +TY ++++
Sbjct: 293 ----------SPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQD---VIPNVITYNSLIN 339

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L   G ++ A  +  +M   GV  N ITY+ L+ G+C+   + +A ++   +       
Sbjct: 340 GLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQG-TR 398

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P    YN+LID +  +           EM   GI P   +Y  L+     +   + A K+
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKL 458

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           FD++    +   D+V +++L+EGYC  G   +A  +++ M + G  P   TY  +  G
Sbjct: 459 FDQLTN--KGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKG 514



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 49/301 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML    +P+V  ++++++ L   G        K+ + +  R     D  + +  +P+   
Sbjct: 322 MLDQDVIPNVITYNSLINGLCNGG--------KINEAIGMR-----DKMVSAGVQPNLIT 368

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y++++N     G  K+ L +FD +   G +P    YN++I    +  +      + E + 
Sbjct: 369 YHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSENEG 179
             GI   + T+  L+A     G++E A+ +  Q   +G  D+  +   + +E Y S  E 
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDL--VTFHILMEGYCSRGE- 485

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFA-----PNSRIYTTLMKGYMNEGRVSDTVR 234
                              S +  +L K  +     P    Y  +MKGY  EG +     
Sbjct: 486 -------------------SRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATN 526

Query: 235 MLGAM---RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
           M   M   RR   N +     +Y  ++    + G ++ A  +L EM   G+  NRITY I
Sbjct: 527 MRTQMEKERRLRMNVA-----SYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI 581

Query: 292 L 292
           +
Sbjct: 582 V 582


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 203/504 (40%), Gaps = 78/504 (15%)

Query: 39  VKRVRKFSDPDIVSDSKPD--TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
           +KR   FS  + + D +P    +++N +L A A + +    + L+ +M   G  PD +T 
Sbjct: 71  IKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITL 130

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-R 155
           N++I      ++    + VL  +L  G +    TF SLV        +  A  +++ M R
Sbjct: 131 NILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVR 190

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
            G R                                                   PN   
Sbjct: 191 MGYR---------------------------------------------------PNVVT 199

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS---HPDHVTYTTVVSALVKAGSMDRARQ 272
           Y TL+ G    G     V++   M            P+ V Y T++ +L K G +D+ ++
Sbjct: 200 YGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKE 259

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +  EM   G+  + + Y+ ++ G C   + + AK L  EM D+  + P+VV++N+LID  
Sbjct: 260 LFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEG-VHPNVVTFNVLIDAL 318

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                   A      M  RG +P   +Y TL+  F L  +   A  +F  M     ++ D
Sbjct: 319 CKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSM-ESKGIETD 377

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
            V++N+L+ GYC+ G + EAK++   M      P V TY +L  G+    K  +A  L+ 
Sbjct: 378 AVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFG 437

Query: 453 EIK------ERC--EVKKEGVNADSDLPPPL-----------KPDEELLDALADICVRAA 493
           E+K      E C   +  +G+  ++ L   +           +P  ++ + L D   +A 
Sbjct: 438 EMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKAR 497

Query: 494 FFRKALEIVACMEEHGIPPNKTKY 517
               A E+   +   G+ PN   Y
Sbjct: 498 KIEIARELFNRLSHEGLEPNVITY 521



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/524 (20%), Positives = 219/524 (41%), Gaps = 77/524 (14%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK------- 55
           +SG++   +A+S V + L       P+ S       V +++++ D  ++S  K       
Sbjct: 67  KSGHIKRSEAFS-VFNHLIDMQPTPPISSFNTLLGAVAKIKRYFD--VISLYKRMSLIGL 123

Query: 56  -PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD    N ++N   NL K    L +  +M   G  P+ +T+  ++K     SR      
Sbjct: 124 APDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATG 183

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY- 173
           +L +++ MG    + T+ +L+      G+  +A  + + M  G       I+  +L  Y 
Sbjct: 184 LLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKP-NLVCYC 242

Query: 174 ----SSENEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPK 207
               S   +G  D   E+F ++    I+P                           ++ +
Sbjct: 243 TIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDE 302

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              PN   +  L+      G++ +   +L  M ++ ++   PD  TY T++      G +
Sbjct: 303 GVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGES---PDTFTYNTLIDGFCLEGRI 359

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           D AR +   M   G+  + ++YN+L+ GYC+  ++ +AK+L REM    +I P V++YN 
Sbjct: 360 DDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCK-EIMPTVITYNT 418

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS---------------- 371
           L+ G         A   F EM+   + P   +Y  L+     ++                
Sbjct: 419 LLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHD 478

Query: 372 -QP--KLANKVFDEMLRDPRVKV---------------DIVAWNMLVEGYCRMGLVEEAK 413
            QP  ++ N + D + +  ++++               +++ + +++ G C+ G +E AK
Sbjct: 479 FQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAK 538

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +   M+E G  PN+ T+ +L  G     +  + + L +E+ E+
Sbjct: 539 DLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEK 582



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 194/450 (43%), Gaps = 27/450 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R GY P+V  + T+++ L  +G+   + +VKL + ++     F         KP+   
Sbjct: 188 MVRMGYRPNVVTYGTLLNGLCMTGNT--MLAVKLHEEMLNGNGGFG-----VTIKPNLVC 240

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++++    G   K  +LF +M   G  PDV+ Y+ +I       R      +   ++
Sbjct: 241 YCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMV 300

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+   + TF  L+ A    G +E A  +++ M +             ++ +  E   D
Sbjct: 301 DEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRID 360

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           D  D  V                +  K    ++  Y  L+ GY   GR+ +  ++   M 
Sbjct: 361 DARDLFV---------------SMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMM 405

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +E     P  +TY T+++ L + G +  A  +  EM    +     TYNILL G C+  
Sbjct: 406 CKE---IMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNN 462

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            + +A EL   + ++   +P +  +N LIDG         A   FN +   G+ P  I+Y
Sbjct: 463 HLSEAMELFHYL-ENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITY 521

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T ++     S Q + A  +F  M  +     ++V +N L+ G+C+   +++   +++ M 
Sbjct: 522 TVMIHGLCKSGQLENAKDLFLGM-EEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMA 580

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLL 450
           E  F P+ +T   + + +S   K  E L L
Sbjct: 581 EKDFSPDASTISIVVDLLSKDEKYREYLHL 610


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 175/385 (45%), Gaps = 24/385 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YNA+++      + +     F +M   G  PDV+TYN ++    +A      +++
Sbjct: 341 PTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWL 400

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELDLEDY 173
           L  +   G+   + T+ +L+  Y   GDL  A  + + M E     DVC     ++    
Sbjct: 401 LGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMN---- 456

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            S    +     E F+++L   + P          FA N+RI   L             V
Sbjct: 457 GSRKVRNLAMAREFFDEMLSKGLQPDC--------FAYNTRICAELTLSSTPMAFQLREV 508

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ML  +        +PD VTY  ++  L K G++  A+++  +M   G+  + ITY  L+
Sbjct: 509 MMLKGI--------YPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLI 560

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
             +C++  + +A++LL  M  D  ++P VV+Y IL+       +   A  +F +M   GI
Sbjct: 561 HAHCERGLLREARKLLNGMVSDG-LQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGI 619

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P +I+Y  L+ A  ++ +  LA + F EML +  +  +   + +L++G CR G   +A 
Sbjct: 620 EPNEITYNVLIHALCMTGRTPLAFRHFHEML-ERGLAPNKYTYTLLIDGNCREGNWADAI 678

Query: 414 RIIERMKENGFYPNVATYGSLANGI 438
           R+   M +NG  P+  T+ +L  G 
Sbjct: 679 RLYFEMHQNGIPPDYCTHNALFKGF 703



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    Y TL+  ++ EGR  +   +L  M  Q    S  D VT+  V+S L + G ++ A
Sbjct: 235 PTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLND-VTFNVVISFLAREGHLENA 293

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++  M R+   A+  TYN L+    ++  + KA+ L  EM ++  I P VV+YN +I 
Sbjct: 294 VKLVDSM-RLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEG-IMPTVVTYNAIIH 351

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G +  + +  A   F EMRA G+ P  I+Y +L+  +  +   K A  +  + LR   + 
Sbjct: 352 GLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGD-LRRAGLA 410

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
             ++ +N L++GYCR+G + EA+R+ E M E G +P+V TY  L NG
Sbjct: 411 PTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNG 457



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/521 (21%), Positives = 200/521 (38%), Gaps = 75/521 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N VL    +  +      ++ +M +   +P ++TYN ++    +  RK     +
Sbjct: 200 PDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASML 259

Query: 116 LERILEMG--ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC----------- 162
           L+ +   G   +L   TF  +++     G LE A  +V +MR  ++              
Sbjct: 260 LKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKASSFTYNPLITALL 319

Query: 163 --KIIRELDLEDYSSENEG---DDDDDDEVFEKLLPNSINPSSE---PPLLPKTFAPNSR 214
               +R+ +      ENEG        + +   LL      +++     +      P+  
Sbjct: 320 ERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVI 379

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y +L+  Y   G + + + +LG +RR       P  +TY T++    + G +  AR++ 
Sbjct: 380 TYNSLLNRYCKAGNLKEALWLLGDLRRA---GLAPTVLTYNTLIDGYCRLGDLAEARRLK 436

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA------------------ 316
            EM   G   +  TY IL+ G  +   +  A+E   EM                      
Sbjct: 437 EEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTL 496

Query: 317 ----------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
                            I PD V+YN++IDG     +   A     +M + G+ P  I+Y
Sbjct: 497 SSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITY 556

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T L+ A       + A K+ + M+ D  ++  +V + +LV   CR G +  A     +M 
Sbjct: 557 TCLIHAHCERGLLREARKLLNGMVSDG-LQPSVVTYTILVHTCCRRGNLYSAYGWFRKML 615

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  PN  TY  L + + +  +   A   + E+ ER                 L P++ 
Sbjct: 616 DVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLER----------------GLAPNKY 659

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
               L D   R   +  A+ +   M ++GIPP+   +  ++
Sbjct: 660 TYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALF 700



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 8/250 (3%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP+ R    +++   +  R  D   + G M +       P  VTY T++ + +K G  D 
Sbjct: 199 APDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLR---VEPTIVTYNTLLDSFLKEGRKDE 255

Query: 270 ARQVLAEMTRIG--VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           A  +L EM   G     N +T+N+++    ++  ++ A +L+  M    K      +YN 
Sbjct: 256 ASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKASS--FTYNP 313

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI   +       A     EM   GI PT ++Y  ++       Q + A   F EM R  
Sbjct: 314 LITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEM-RAM 372

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            +  D++ +N L+  YC+ G ++EA  ++  ++  G  P V TY +L +G        EA
Sbjct: 373 GLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEA 432

Query: 448 LLLWKEIKER 457
             L +E+ E+
Sbjct: 433 RRLKEEMVEQ 442



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 66/257 (25%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    ++ ++  L  +G+             +K  ++     +    +PD   
Sbjct: 509 MMLKGIYPDTVTYNVIIDGLCKTGN-------------LKDAKRLKTKMVSDGLQPDCIT 555

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++A    G  ++  +L + M   G +P V+TY +++  C R    +       ++L
Sbjct: 556 YTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKML 615

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           ++GI     T+  L+ A    G   +A      M E                        
Sbjct: 616 DVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLE------------------------ 651

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     +  APN   YT L+ G   EG  +D +R+   M 
Sbjct: 652 --------------------------RGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMH 685

Query: 241 RQEDNASHPDHVTYTTV 257
           +   N   PD+ T+  +
Sbjct: 686 Q---NGIPPDYCTHNAL 699


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 201/471 (42%), Gaps = 37/471 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +PD   Y A+L      G+  +  + FD+M      P+V   +++I    +A R    +
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
                +   GI      + +L++       L+ A  I+  MR+   +   +     ++  
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              NE   D   E+FE +   S+  S           P+   Y TL+ G    G++   +
Sbjct: 125 CKNNE--PDRAQELFEHM--KSVECS-----------PSMVTYNTLLDGLFRTGKLERAM 169

Query: 234 RMLGAM--RRQED--NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            +   M  RR  D  +   P+ +TY+ ++  L KA  + +A ++L  M   G   + ITY
Sbjct: 170 ALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITY 229

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
            IL+ G C++ ++  A E+LREM  DA   P++V+YN L+ G       + AL    +M 
Sbjct: 230 TILVDGLCKESKVAAAWEVLREML-DAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 288

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RG  P  ++Y TL+       + K A  +  +M+ D     D++ +NML+ G C+   V
Sbjct: 289 CRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI-DKGGTPDLMIYNMLINGLCKADQV 347

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +E+  ++ R    G  P+V TY S+  G+  + +  EA  L   +K R            
Sbjct: 348 DESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR------------ 395

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             PP +     L+D L     +A    +A ++   M   G   +   Y  +
Sbjct: 396 GCPPDVILYSTLIDGLC----KAGKVDEAFDLYEVMAGDGCDADVVTYSTL 442



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 186/426 (43%), Gaps = 32/426 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           DT  Y A+L+      +  + L +  +M + G +P+V+TYN +I    + +       + 
Sbjct: 78  DTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELF 137

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD---------------- 160
           E +  +  +  M T+ +L+      G LE A  + Q M + R                  
Sbjct: 138 EHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVL 197

Query: 161 ---VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTF 209
              +CK  R     +     +      D +   +L + +   S+          +L    
Sbjct: 198 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 257

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN   Y +L+ G     RVSD    L  MR        P+ VTY T++  L K G +  
Sbjct: 258 VPNLVTYNSLLHGLCRARRVSDA---LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKD 314

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +LA+M   G   + + YN+L+ G C+  Q+D++  LLR  A    I+PDVV+Y+ +I
Sbjct: 315 ACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR-AVSGGIKPDVVTYSSVI 373

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G    +    A      +++RG  P  I Y+TL+     + +   A  +++ M  D   
Sbjct: 374 YGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDG-C 432

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D+V ++ L++G C+ G V+EA  ++ RM   G  P+  TY SL  G+       EA+ 
Sbjct: 433 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 492

Query: 450 LWKEIK 455
           L +E++
Sbjct: 493 LVEEME 498



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 168/385 (43%), Gaps = 54/385 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN++L+      +    L L   M   G  P+V+TY  +I    +  R      +
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +++ G T  +  +  L+        L  A+ + +++   RR V   I+  D+  YSS
Sbjct: 319 LADMIDKGGTPDLMIYNMLING------LCKADQVDESIALLRRAVSGGIKP-DVVTYSS 371

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--PNSRIYTTLMKGYMNEGRVSDTV 233
                      ++     N ++ +    L  K+    P+  +Y+TL+ G    G+V +  
Sbjct: 372 V----------IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 421

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M     +    D VTY+T++  L KAG +D A  +LA M R+G P + +TYN L+
Sbjct: 422 DLYEVM---AGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLI 478

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           KG C    +D+A EL+ EM + +   P  V+YNILI G   ++    A+    + +AR +
Sbjct: 479 KGLCDLNHLDEAIELVEEM-ERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCV 537

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           A    +                               +D +A++ L++G C+ G V EA 
Sbjct: 538 AAGGTA-------------------------------LDTIAYSSLIDGLCKAGRVAEAL 566

Query: 414 RIIERMKENGFYPNVATYGSLANGI 438
              + M +NG  P+  TY  L  G+
Sbjct: 567 DYFQEMIDNGVIPDHITYSILLEGL 591



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 123/514 (23%), Positives = 217/514 (42%), Gaps = 55/514 (10%)

Query: 25  DDGPVESVKLFDVVVKRVRKFSDPDIVSD---------SKPDTAAYNAVLNACANLGKPK 75
           D G   +V  ++ ++  + K ++PD   +           P    YN +L+     GK +
Sbjct: 107 DHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLE 166

Query: 76  KFLQLFDQM-----HEFG--AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
           + + LF +M     H+      P+V+TY+V+I    +A+R    V +LE +   G +  +
Sbjct: 167 RAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDV 226

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF 188
            T+  LV       D    E+ V A  E  R++       +L  Y+S   G         
Sbjct: 227 ITYTILV-------DGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHG--------- 270

Query: 189 EKLLPNSINPSSEPPLL----PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
              L  +   S    L+     +   PN   Y TL+ G    GRV D   ML  M    D
Sbjct: 271 ---LCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI---D 324

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD + Y  +++ L KA  +D +  +L      G+  + +TY+ ++ G C+  ++D+
Sbjct: 325 KGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDE 384

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  LL  +       PDV+ Y+ LIDG         A   +  M   G     ++Y+TL+
Sbjct: 385 ACRLLLYVKSRG-CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLI 443

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                + +   A+ +   M+R        + +N L++G C +  ++EA  ++E M+ +  
Sbjct: 444 DGLCKAGRVDEAHLLLARMVR-MGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNC 502

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            P+  TY  L +G+    +   A++L ++ K RC V   G   D+           L+D 
Sbjct: 503 APSAVTYNILIHGMCRMERVDSAVVLLEQAKARC-VAAGGTALDT------IAYSSLIDG 555

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           L     +A    +AL+    M ++G+ P+   Y 
Sbjct: 556 LC----KAGRVAEALDYFQEMIDNGVIPDHITYS 585



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 22/137 (16%)

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
           P  + D+  +  L+ G+CR G +++A+R  + M+     PNV     L +G+  A++  +
Sbjct: 3   PICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSID 62

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPD---EELLDALADICVRAAFFRKALEIVA 503
           AL  ++ +      +  G+ AD+ +   L      E+ LD             +AL I+ 
Sbjct: 63  ALRCFRAM------QGSGIVADTVIYTALLSGLWKEKRLD-------------QALAILH 103

Query: 504 CMEEHGIPPNKTKYKKI 520
            M +HG  PN   Y  +
Sbjct: 104 EMRDHGCEPNVVTYNSL 120


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 146/307 (47%), Gaps = 18/307 (5%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+   +  GR  D V +  +    +D    PD  ++  V+  + + G++ +A +++ 
Sbjct: 49  YNNLLNTLIAHGRAQDAVALFESWI--QDGLYSPDVWSFNVVIKGVCRVGNLQKALELVE 106

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            MT  G   + IT NIL+ G C+  Q++K  E+LR +  D    P+VV+Y  +I G+   
Sbjct: 107 RMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKA 166

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A + +N+M   G  P  ++Y  L+  +  +   + A +++ +++       D+V 
Sbjct: 167 GRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHS-CPPDVVT 225

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N L++GYCR G +++A RI   M ++   PNV T+  + + +    +  EAL L +E+ 
Sbjct: 226 FNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELN 285

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            R ++                P   + + + DI  +     +A  IV  MEE G  P+K 
Sbjct: 286 MRADI---------------VPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKY 330

Query: 516 KYKKIYV 522
            Y  + +
Sbjct: 331 TYTILII 337



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 185/447 (41%), Gaps = 71/447 (15%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           +SGY+P    +S V      +G         L D     + K S        + +  AYN
Sbjct: 4   QSGYVPDAGFFSFVAGSCTNAG---------LLDAAANLLTKGS----WFGCRIEWYAYN 50

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
            +LN     G+ +  + LF+   + G   PDV ++NV+IK   R       + ++ER+ E
Sbjct: 51  NLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTE 110

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQ-AMREGRRDVCKIIRELDLEDYSSENEGD 180
            G +                      +TI Q  + +G   +C++            N+G 
Sbjct: 111 FGCS---------------------PDTITQNILVDG---LCRV---------KQVNKGH 137

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                EV  +L  + +              PN   YT+++ GY   GR+ D   +   M 
Sbjct: 138 -----EVLRRLQRDGV------------CMPNVVTYTSVISGYCKAGRMKDAFSVYNDML 180

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   + + P+ VTY  +++   KA  M+ A ++  ++     P + +T+N L+ GYC+  
Sbjct: 181 Q---SGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCG 237

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKIS 359
           Q+D A  +  EM     I+P+V +++I+I      + SA AL+   E+  R  I P    
Sbjct: 238 QLDDAMRIWMEMGQH-HIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFI 296

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  ++       +   AN +  +M  +     D   + +L+ G+C  G + EA  +  +M
Sbjct: 297 YNPIIDILCKGGKVDEANLIVTDM-EEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKM 355

Query: 420 KENGFYPNVATYGSLANGISLARKPGE 446
            E G  P+  T  S  + +  A  P E
Sbjct: 356 VETGCRPDNITINSFISCVLKAGMPNE 382



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 9/221 (4%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R Q D    P+ VTYT+V+S   KAG M  A  V  +M + G   N +TYN+L+ GY + 
Sbjct: 142 RLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKA 201

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
           L ++ A  +  ++   +   PDVV++N LIDG+        A+  + EM    I P   +
Sbjct: 202 LDMESAVRMYWQLILHS-CPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYT 260

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV----AWNMLVEGYCRMGLVEEAKRI 415
           ++ ++   +L +Q + A  +   +LR+  ++ DIV     +N +++  C+ G V+EA  I
Sbjct: 261 FSIIIH--SLCTQNRSAEAL--SLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLI 316

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           +  M+E G +P+  TY  L  G  +  +  EA+ L+ ++ E
Sbjct: 317 VTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVE 357



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 147/366 (40%), Gaps = 61/366 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD  ++N V+     +G  +K L+L ++M EFG  PD +T N+++    R  + +    
Sbjct: 79  SPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHE 138

Query: 115 VLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDL 170
           VL R+   G+  CM    T+ S+++ Y   G ++ A ++   M + G R           
Sbjct: 139 VLRRLQRDGV--CMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTR----------- 185

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                                   PN+  Y  L+ GY     + 
Sbjct: 186 ----------------------------------------PNTVTYNVLINGYGKALDME 205

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             VRM   +      +  PD VT+ +++    + G +D A ++  EM +  +  N  T++
Sbjct: 206 SAVRMYWQLILH---SCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFS 262

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           I++   C Q +  +A  LLRE+   A I P    YN +ID          A     +M  
Sbjct: 263 IIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEE 322

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P K +YT L+    +  +   A  +F +M+ +   + D +  N  +    + G+  
Sbjct: 323 KGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMV-ETGCRPDNITINSFISCVLKAGMPN 381

Query: 411 EAKRII 416
           E  +I+
Sbjct: 382 EVHQIM 387



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 118/301 (39%), Gaps = 22/301 (7%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD   ++ V  +   AG +D A  +L + +  G       YN LL       +   A  L
Sbjct: 9   PDAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVAL 68

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
                 D    PDV S+N++I G   + +   AL     M   G +P  I+   L+    
Sbjct: 69  FESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLC 128

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              Q    ++V   + RD     ++V +  ++ GYC+ G +++A  +   M ++G  PN 
Sbjct: 129 RVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNT 188

Query: 429 ATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
            TY  L NG   A     A+ + W+ I   C                  PD    ++L D
Sbjct: 189 VTYNVLINGYGKALDMESAVRMYWQLILHSC-----------------PPDVVTFNSLID 231

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKR 547
              R      A+ I   M +H I PN   +  I   +HS + T   +++A    R    R
Sbjct: 232 GYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSII---IHS-LCTQNRSAEALSLLRELNMR 287

Query: 548 A 548
           A
Sbjct: 288 A 288


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 10/387 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ V+       K +K   LF +M   G  PDV TY ++I    +          
Sbjct: 453 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSW 512

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +  +G +  + T+ +L+ AY+    +  A  I   M +       I     ++    
Sbjct: 513 FDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLC- 571

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK---TFAPNSRIYTTLMKGYMNEGRVSDT 232
              G+     EV+ K++  S N  S+     +   + APN   Y  L+ G     +V D 
Sbjct: 572 -KAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDA 630

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L  M     N   P+H+ Y  ++    K G +D A++V   M++ G      TY  L
Sbjct: 631 QELLDVM---SSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSL 687

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +    +  ++D A ++L +M + +   P+VV+Y  +IDG   I +   AL   + M  RG
Sbjct: 688 IDAMFKDRRLDLAIKVLSQMLESS-CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRG 746

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  ++YT+L+     S +  ++ ++F +M+       + V + +L+   C  GL++EA
Sbjct: 747 CNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQG-CAPNYVTYRVLINHCCAAGLLDEA 805

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
             ++  MK+  +   V  Y S+  G S
Sbjct: 806 HSLLSEMKQTYWPKYVQGYCSVVQGFS 832



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 175/417 (41%), Gaps = 74/417 (17%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           +K +TA +   L     +GK  K  Q+   M   G  PD  TY+ +I     A +     
Sbjct: 419 NKVNTANFARCL---CGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAF 475

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            + + +  +G+   + T+  L+ ++   G +E A +    M                   
Sbjct: 476 LLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEM------------------- 516

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E+ G                              +P+   YT L+  Y+   +V    
Sbjct: 517 --ESVG-----------------------------CSPSVVTYTALLHAYLKTKQVPQAS 545

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT----RIG-------- 281
            +     R  D    P+ +TY+ +V  L KAG   +A +V A+M      +G        
Sbjct: 546 DIF---HRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGE 602

Query: 282 ----VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
               +  N +TY  L+ G C+  ++  A+ELL  M+ +   EP+ + Y+ LIDGF  +  
Sbjct: 603 HTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNG-CEPNHIIYDALIDGFCKVGK 661

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A   F  M   G  PT  +YT+L+ A     +  LA KV  +ML +     ++V + 
Sbjct: 662 LDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQML-ESSCTPNVVTYT 720

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++G CR+G  ++A +++  M++ G  PNV TY SL +G+  + K   +L L+ ++
Sbjct: 721 AMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQM 777



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 156/351 (44%), Gaps = 45/351 (12%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P++  Y+ ++       +V     +   M+        PD  TYT ++ +  K
Sbjct: 446 MMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSV---GVIPDVYTYTILIDSFCK 502

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +++AR    EM  +G   + +TY  LL  Y +  Q+ +A ++   M  DA   P+ +
Sbjct: 503 VGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMV-DAGCAPNTI 561

Query: 324 SYNILIDGF----------------ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +Y+ L+DG                 I   D+ G+  +F       IAP  ++Y  L+   
Sbjct: 562 TYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGL 621

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + +   A ++ D M  +   + + + ++ L++G+C++G ++ A+ +  RM + G+ P 
Sbjct: 622 CKAHKVVDAQELLDVMSSNG-CEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPT 680

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY SL + +   R+   A+ +  ++ E            S   P +     ++D L  
Sbjct: 681 VHTYTSLIDAMFKDRRLDLAIKVLSQMLE------------SSCTPNVVTYTAMIDGLC- 727

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY--------VEMHSRMFT 530
              R    +KAL++++ ME+ G  PN   Y  +         V+M  ++FT
Sbjct: 728 ---RIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFT 775



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 116/510 (22%), Positives = 203/510 (39%), Gaps = 70/510 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +P  A YNA++   A  G+     ++  +M E G   D  T     + LC        LV
Sbjct: 204 RPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALV 263

Query: 114 FVLERILEMGITLCMTTFQSLVAAYV---------------GFGDLEIAETIVQA-MREG 157
            +     ++   LC      L+ A +                  ++    T++   +++ 
Sbjct: 264 MIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKK 323

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP---PLLPK---TFAP 211
           +   CK I  + +      NEG + +   +F  L+ +  N    P    LL +      P
Sbjct: 324 QLGWCKRIISMMM------NEGCNPNPS-LFNSLVHSYCNARDYPYAYKLLNRMAGCGCP 376

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRR--QEDNASHP--DHVTYTTVVSALVKAGSM 267
              +   +  G +  G    +  +L    +  +E  AS    + V        L   G  
Sbjct: 377 PGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKF 436

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           D+A Q++  M R G   +  TY+ ++   C+ ++++KA  L +EM     I PDV +Y I
Sbjct: 437 DKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVI-PDVYTYTI 495

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LID F  +     A ++F+EM + G +P+ ++YT L+ A+  + Q   A+ +F  M+ D 
Sbjct: 496 LIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMV-DA 554

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG------FY----------PNVATY 431
               + + ++ LV+G C+ G  ++A  +  +M          FY          PNV TY
Sbjct: 555 GCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTY 614

Query: 432 GSLANGISLARKPGEALLLWKEIKER-CEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           G+L +G+  A K  +A  L   +    CE                 P+  + DAL D   
Sbjct: 615 GALIDGLCKAHKVVDAQELLDVMSSNGCE-----------------PNHIIYDALIDGFC 657

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +      A E+   M + G  P    Y  +
Sbjct: 658 KVGKLDNAQEVFFRMSKCGYLPTVHTYTSL 687



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 113/545 (20%), Positives = 209/545 (38%), Gaps = 102/545 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G++P    +S V++ L         E++K    V K    F +   V    PD   
Sbjct: 446 MMRKGFVPDTSTYSKVITFLC--------EAMK----VEKAFLLFQEMKSVG-VIPDVYT 492

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++++   +G  ++    FD+M   G  P V+TY  ++    +  +      +  R++
Sbjct: 493 YTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMV 552

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLE-----------------------------IAETIV 151
           + G      T+ +LV      G+ +                             IA  +V
Sbjct: 553 DAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVV 612

Query: 152 Q--AMREGRRDVCKIIRELDLEDYSSENE------------------GDDDDDDEVFEKL 191
              A+ +G     K++   +L D  S N                   G  D+  EVF ++
Sbjct: 613 TYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRM 672

Query: 192 LPNSINPSSE----------------------PPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                 P+                          +L  +  PN   YT ++ G    G  
Sbjct: 673 SKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGEC 732

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
              +++L  M ++  N   P+ VTYT+++  L K+G +D + Q+  +M   G   N +TY
Sbjct: 733 QKALKLLSMMEKRGCN---PNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTY 789

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVV-SYNILIDGFILIDDSAGALTFFNEM 348
            +L+   C    +D+A  LL EM       P  V  Y  ++ GF        +L    E+
Sbjct: 790 RVLINHCCAAGLLDEAHSLLSEMKQ--TYWPKYVQGYCSVVQGF--SKKFIASLGLLEEL 845

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA---WNMLVEGYCR 405
            + G+      Y  L+ +F+ + + + A ++  EM+ +    ++I +   +  L++  C 
Sbjct: 846 ESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMM-EVSSSLNITSKDTYTSLIQALCL 904

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
              +E+A  +   +   G  P ++ +  L  G+    K  EAL L   + +      EGV
Sbjct: 905 ASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCD------EGV 958

Query: 466 NADSD 470
           N  S+
Sbjct: 959 NWQSN 963



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 125/322 (38%), Gaps = 48/322 (14%)

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
           R+   +++     G  +  +  LG   R +D    P   TY  +V  L  AG MD   +V
Sbjct: 173 RLLNVIVRKCCRHGAWAKALEELG---RLKDFGYRPSGATYNALVQVLATAGQMDMGFRV 229

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM+ +G   ++ T     +  C++ +   A  ++    +D K+  D V    +I G +
Sbjct: 230 QKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIER--EDFKL--DTVLCTQMISGLM 285

Query: 334 ---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
              L D+   A++F + MR     P  ++Y TL+  F    Q     ++   M+ +    
Sbjct: 286 EASLFDE---AISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEG-CN 341

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY----GSLANG--------I 438
            +   +N LV  YC       A +++ RM   G  P    Y    GS+ +G        +
Sbjct: 342 PNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLL 401

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
           +LA K  E +L        C + K  VN  +                A        F KA
Sbjct: 402 ALAEKVYEEML-----ASSCVLNK--VNTAN---------------FARCLCGMGKFDKA 439

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
            +I+  M   G  P+ + Y K+
Sbjct: 440 FQIIKLMMRKGFVPDTSTYSKV 461


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 151/316 (47%), Gaps = 22/316 (6%)

Query: 207 KTFAPNSRI--YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           +   P++ I  Y T++ GY   G +    RM+ ++         PD  TY  ++ AL   
Sbjct: 120 EALGPSATIITYNTMVNGYCRAGNIDAARRMIDSV------PFAPDTFTYNPLIRALCVR 173

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +  A  V  +M   G   + +TY+ILL   C++    +A  LL EM      EPD+V+
Sbjct: 174 GCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKG-CEPDIVT 232

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN+LI+      D   AL   N + + G  P  ++YT ++K+   S + + A+K+  +M 
Sbjct: 233 YNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMF 292

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
            +     D V +N ++   C+ G V  A +++ +M E+G  P++ TY S+ +G+   R+ 
Sbjct: 293 SN-DCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRV 351

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            EA+ L KE+     V K  +           PD+   + +     +   F +A+++V  
Sbjct: 352 DEAIKLLKELLAE-MVSKNCI-----------PDQVTFNTIITSLCQKGLFDRAIKVVDE 399

Query: 505 MEEHGIPPNKTKYKKI 520
           M EHG  P+ T Y  I
Sbjct: 400 MSEHGCIPDITTYNCI 415



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 201/462 (43%), Gaps = 51/462 (11%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDD----------GPVESVKLFDVVVKRVRKFSDPDIVS- 52
           SG  P V   + ++ +L A G            GP  ++  ++ +V    +  + D    
Sbjct: 90  SGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATIITYNTMVNGYCRAGNIDAARR 149

Query: 53  --DS---KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107
             DS    PDT  YN ++ A    G     L +FD M   G  P V+TY++++    + S
Sbjct: 150 MIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKES 209

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
                V +L+ +   G    + T+  L+ A    GD+  A  ++ ++         +   
Sbjct: 210 GYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYT 269

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
             L+   S      ++ D++  K+  N               AP+   +  ++     +G
Sbjct: 270 PVLKSLCSSERW--EEADKLLTKMFSNDC-------------APDEVTFNAVITSLCQKG 314

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA----RQVLAEMTRIGVP 283
            V    ++L  M    ++   PD +TY++++  L K   +D A    +++LAEM      
Sbjct: 315 FVGRATKVLAQM---SEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCI 371

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID-DSAGAL 342
            +++T+N ++   CQ+   D+A +++ EM++   I PD+ +YN ++DGF+     +  AL
Sbjct: 372 PDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCI-PDITTYNCIVDGFLCKSCKTEEAL 430

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV-----DIVAWN 397
              N M + G+ P   +Y +L  AF LS + ++   +   M R  RV+      D + +N
Sbjct: 431 DLLNLMVSNGLCPDTTTYKSL--AFGLSREDEMERAI--GMFR--RVQAMGLSPDKMLYN 484

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            ++ G C+    + A      M  NG  P+ +TY  L  GI+
Sbjct: 485 AILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIA 526



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 132/302 (43%), Gaps = 29/302 (9%)

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           ++G +  G +   +R++ ++     +   P  +    ++  L   G +  A +V+  +  
Sbjct: 68  LRGLVQRGELDGALRLVHSI---SGSGKDPAVIPCNILIKKLCADGRVADAERVVEAL-- 122

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G  A  ITYN ++ GYC+   ID A    R M D     PD  +YN LI    +     
Sbjct: 123 -GPSATIITYNTMVNGYCRAGNIDAA----RRMIDSVPFAPDTFTYNPLIRALCVRGCVL 177

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            AL  F++M  RG +P+ ++Y+ L+ A    S  K A  + DEM R    + DIV +N+L
Sbjct: 178 DALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEM-RSKGCEPDIVTYNVL 236

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-LLLWKEIKERC 458
           +   C  G V EA +++  +   G  P+  TY  +   +  + +  EA  LL K     C
Sbjct: 237 INAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                             PDE   +A+     +  F  +A +++A M EHG  P+   Y 
Sbjct: 297 -----------------APDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYS 339

Query: 519 KI 520
            I
Sbjct: 340 SI 341



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 208/471 (44%), Gaps = 64/471 (13%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILE-MGITLCMTTFQSLV 135
           L+L   +   G  P V+  N++IK LCA        V   ER++E +G +  + T+ ++V
Sbjct: 81  LRLVHSISGSGKDPAVIPCNILIKKLCADGR-----VADAERVVEALGPSATIITYNTMV 135

Query: 136 AAYVGFGDLEIAETIVQAMREGRRDVC--KIIRELDLEDYSSENEGDDDDDDEVFEKLLP 193
             Y   G+++ A  ++ ++           +IR L +        G   D   VF+ +L 
Sbjct: 136 NGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVR-------GCVLDALAVFDDMLH 188

Query: 194 NSINPS--SEPPLL--------------------PKTFAPNSRIYTTLMKGYMNEGRVSD 231
              +PS  +   LL                     K   P+   Y  L+    ++G V +
Sbjct: 189 RGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGE 248

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            +++L ++         PD VTYT V+ +L  +   + A ++L +M       + +T+N 
Sbjct: 249 ALKVLNSL---PSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNA 305

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALT-FFNE 347
           ++   CQ+  + +A ++L +M++     PD+++Y+ ++DG      +D++   L     E
Sbjct: 306 VITSLCQKGFVGRATKVLAQMSEHG-CTPDIITYSSIMDGLCKERRVDEAIKLLKELLAE 364

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY-CRM 406
           M ++   P ++++ T++ +         A KV DEM     +  DI  +N +V+G+ C+ 
Sbjct: 365 MVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIP-DITTYNCIVDGFLCKS 423

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
              EEA  ++  M  NG  P+  TY SLA G+S   +   A+ +++ ++           
Sbjct: 424 CKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAM--------- 474

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                   L PD+ L +A+     +      A++  A M  +G  P+++ Y
Sbjct: 475 -------GLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTY 518



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 179/421 (42%), Gaps = 67/421 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P V  +S ++   A   + G  ++V L D   +   K  +PDIV+        
Sbjct: 186 MLHRGCSPSVVTYSILLD--ATCKESGYKQAVVLLD---EMRSKGCEPDIVT-------- 232

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++NA  + G   + L++ + +  +G KPD +TY  ++K    + R      +L ++ 
Sbjct: 233 YNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMF 292

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                    TF +++ +    G +  A  ++  M E                        
Sbjct: 293 SNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSE------------------------ 328

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P+   Y+++M G   E RV + +++L  + 
Sbjct: 329 --------------------------HGCTPDIITYSSIMDGLCKERRVDEAIKLLKELL 362

Query: 241 RQEDNASH-PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY-CQ 298
            +  + +  PD VT+ T++++L + G  DRA +V+ EM+  G   +  TYN ++ G+ C+
Sbjct: 363 AEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCK 422

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             + ++A +LL  M  +  + PD  +Y  L  G    D+   A+  F  ++A G++P K+
Sbjct: 423 SCKTEEALDLLNLMVSNG-LCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKM 481

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            Y  ++       +  LA   F  M+ +  +  D   + +LVEG    G +EEAK ++  
Sbjct: 482 LYNAILLGLCKKWRTDLAIDFFAYMVSNGCMP-DESTYIILVEGIAYEGFLEEAKELLGN 540

Query: 419 M 419
           +
Sbjct: 541 L 541



 Score = 45.8 bits (107), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 23/188 (12%)

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
           GAL   + +   G  P  I    L+K      +   A +V + +   P     I+ +N +
Sbjct: 79  GALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEAL--GPSAT--IITYNTM 134

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           V GYCR G ++ A+R+I+ +    F P+  TY  L   + +     +AL ++ ++  R  
Sbjct: 135 VNGYCRAGNIDAARRMIDSVP---FAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHR-- 189

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                        P +     LLDA      + + +++A+ ++  M   G  P+   Y  
Sbjct: 190 ----------GCSPSVVTYSILLDATC----KESGYKQAVVLLDEMRSKGCEPDIVTYNV 235

Query: 520 IYVEMHSR 527
           +   M S+
Sbjct: 236 LINAMCSQ 243


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 155/322 (48%), Gaps = 22/322 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K   P+   YT L+ G+  + R  +   +  +M     N   P+  TYT ++   +K
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN---PNRFTYTALIDGFIK 358

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G+++ A ++  EM   G+  N +TYN ++ G  +  ++ KA  L  EM   A IEPD  
Sbjct: 359 EGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM-AGIEPDTW 417

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN+LIDG++   D A A     EM+AR + P+  +Y+ L+     SS  + AN+V D+M
Sbjct: 418 TYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +R+  VK ++  +  L++ Y +    E A  +++ M  NG  P++  Y  L  G+  A+K
Sbjct: 478 IRNG-VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKK 536

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA +L  ++ E+                 +KP+     A  ++  ++   + A     
Sbjct: 537 VEEAKMLLVDMGEK----------------GIKPNAHTYGAFINLYSKSGEIQVAERYFK 580

Query: 504 CMEEHGIPPNKTKYKKIYVEMH 525
            M   GI PN   Y  I ++ H
Sbjct: 581 DMLSSGIVPNNVIY-TILIKGH 601



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 198/452 (43%), Gaps = 38/452 (8%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   P+   Y A+++     G  ++ L++ D+M   G K +V+TYN MI   A+A     
Sbjct: 340 SGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAK 399

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + +   +L  GI     T+  L+  Y+   D+  A  ++  M+  +         + + 
Sbjct: 400 AMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLIS 459

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                +  D    +EV ++++ N +              PN  +Y TL+K Y+ E R   
Sbjct: 460 GLC--HSSDLQKANEVLDQMIRNGVK-------------PNVFMYGTLIKAYVQESRYEM 504

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + +L  M     N   PD   Y  ++  L +A  ++ A+ +L +M   G+  N  TY  
Sbjct: 505 AIELLKIMIA---NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
            +  Y +  +I  A+   ++M     I P+ V Y ILI G   + ++  AL+ F  M  +
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSG-IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEK 620

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P   +Y+ ++ + + + + K A  VF + L+   V  D+  +N L+ G+C+ G +E+
Sbjct: 621 GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVP-DVFLYNSLISGFCKEGDIEK 679

Query: 412 AKRIIERMKENGFYPNVATYGSLAN--GISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           A ++ + M  NG  PN+  Y +L N  G   +    EA  L+ E+               
Sbjct: 680 ASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEM--------------- 724

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEI 501
            +   + PD  +   L D C +     KAL +
Sbjct: 725 -ISKGISPDGYIYCILIDGCGKEGNLEKALSL 755



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/520 (22%), Positives = 221/520 (42%), Gaps = 50/520 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +  +P V  ++ V+      GD            V+K     S+ +   + KP+   
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGD------------VIKGKMVLSEME--KECKPNLFT 278

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA +      G   + L++   M E G  PD  TY +++    +  R      + E + 
Sbjct: 279 YNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMP 338

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     T+ +L+  ++  G++E      +A+R     + + ++ L++  Y++   G 
Sbjct: 339 SSGLNPNRFTYTALIDGFIKEGNIE------EALRIKDEMITRGLK-LNVVTYNAMIGGI 391

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               +      L N         +L     P++  Y  L+ GY+    ++    +L  M+
Sbjct: 392 AKAGEMAKAMSLFNE--------MLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            ++     P   TY+ ++S L  +  + +A +VL +M R GV  N   Y  L+K Y Q+ 
Sbjct: 444 ARKLT---PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           + + A ELL+ M  +  + PD+  YN LI G         A     +M  +GI P   +Y
Sbjct: 501 RYEMAIELLKIMIANG-VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              +  ++ S + ++A + F +ML    V  +++ + +L++G+C +G   EA    + M 
Sbjct: 560 GAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVI-YTILIKGHCDVGNTVEALSTFKCML 618

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           E G  P++  Y ++ + +S   K  EA+ ++ +                 L   + PD  
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKF----------------LKTGVVPDVF 662

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L ++L     +     KA ++   M  +GI PN   Y  +
Sbjct: 663 LYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 181/404 (44%), Gaps = 23/404 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y+ +++   +    +K  ++ DQM   G KP+V  Y  +IK   + SR  + + +
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL 508

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ ++  G+   +  +  L+        +E A+ ++  M E             +  YS 
Sbjct: 509 LKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSK 568

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G+    +  F+ +L + I              PN+ IYT L+KG+ +   V +TV  
Sbjct: 569 S--GEIQVAERYFKDMLSSGI-------------VPNNVIYTILIKGHCD---VGNTVEA 610

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   +   +    PD   Y+ ++ +L K G    A  V  +  + GV  +   YN L+ G
Sbjct: 611 LSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG 670

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILID--GFILIDDSAGALTFFNEMRARGI 353
           +C++  I+KA +L  EM  +  I P++V YN LI+  G+    +   A   F+EM ++GI
Sbjct: 671 FCKEGDIEKASQLYDEMLHNG-INPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGI 729

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           +P    Y  L+         + A  +F E     +    + A+N L++ +C+ G V EA+
Sbjct: 730 SPDGYIYCILIDGCGKEGNLEKALSLFHE--AQQKSVGSLSAFNSLIDSFCKHGKVIEAR 787

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            + + M +    PN+ TY  L +    A    EA  L+ +++ R
Sbjct: 788 ELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETR 831



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 190/450 (42%), Gaps = 40/450 (8%)

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
           F +++  M E    PDV TY  +IK   +         VL   +E      + T+ + + 
Sbjct: 226 FWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSE-MEKECKPNLFTYNAFIG 284

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
                G ++ A  + + M E           L ++ +  +      +   +FE +  + +
Sbjct: 285 GLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKR--SKEAKLIFESMPSSGL 342

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
           N             PN   YT L+ G++ EG + + +R+   M  +       + VTY  
Sbjct: 343 N-------------PNRFTYTALIDGFIKEGNIEEALRIKDEMITR---GLKLNVVTYNA 386

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  + KAG M +A  +  EM   G+  +  TYN+L+ GY +   + KA ELL EM    
Sbjct: 387 MIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEM-KAR 445

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           K+ P   +Y++LI G     D   A    ++M   G+ P    Y TL+KA+   S+ ++A
Sbjct: 446 KLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMA 505

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            ++   M+ +  V  D+  +N L+ G CR   VEEAK ++  M E G  PN  TYG+  N
Sbjct: 506 IELLKIMIANG-VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
              L  K GE  +  +  K+              L   + P+  +   L           
Sbjct: 565 ---LYSKSGEIQVAERYFKDM-------------LSSGIVPNNVIYTILIKGHCDVGNTV 608

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
           +AL    CM E G+ P+   Y  I   +HS
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAI---IHS 635



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 203/467 (43%), Gaps = 39/467 (8%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P    +S ++S L  S D             +++  +  D  I +  KP+   Y  ++ A
Sbjct: 449 PSPFTYSVLISGLCHSSD-------------LQKANEVLDQMIRNGVKPNVFMYGTLIKA 495

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
                + +  ++L   M   G  PD+  YN +I    RA +      +L  + E GI   
Sbjct: 496 YVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPN 555

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             T+ + +  Y   G++++AE   + M         +I  + ++ +         D    
Sbjct: 556 AHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHC--------DVGNT 607

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
            E L       S+   +L K   P+ R Y+ ++      G+   T   +G   +      
Sbjct: 608 VEAL-------STFKCMLEKGLIPDIRAYSAIIHSLSKNGK---TKEAMGVFLKFLKTGV 657

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK--GYCQQLQIDKA 305
            PD   Y +++S   K G +++A Q+  EM   G+  N + YN L+   GYC+   + +A
Sbjct: 658 VPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEA 717

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +L  EM     I PD   Y ILIDG     +   AL+ F+E + + +     ++ +L+ 
Sbjct: 718 FKLFDEMISKG-ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS-AFNSLID 775

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           +F    +   A ++FD+M+ D ++  +IV + +L++ Y +  ++EEA+++   M+     
Sbjct: 776 SFCKHGKVIEARELFDDMV-DKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNII 834

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER---CEVKKEGVNADS 469
           PN  TY SL    +      + + L+K+++ R   C+    GV A +
Sbjct: 835 PNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASA 881



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 179/421 (42%), Gaps = 73/421 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+   +   ++  + SG+    E            R F D  + S   P+   
Sbjct: 547 MGEKGIKPNAHTYGAFINLYSKSGEIQVAE------------RYFKDM-LSSGIVPNNVI 593

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++    ++G   + L  F  M E G  PD+  Y+ +I   ++  +    + V  + L
Sbjct: 594 YTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL 653

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+   +  + SL++ +                       CK              EGD
Sbjct: 654 KTGVVPDVFLYNSLISGF-----------------------CK--------------EGD 676

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK--GYMNEGRVSDTVRMLGA 238
            +   ++++++L N INP             N  +Y TL+   GY   G +++  ++   
Sbjct: 677 IEKASQLYDEMLHNGINP-------------NIVVYNTLINDYGYCKSGNLTEAFKLFDE 723

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      PD   Y  ++    K G++++A  +  E  +  V  +   +N L+  +C+
Sbjct: 724 MISK---GISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCK 779

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ +A+EL  +M D  K+ P++V+Y ILID +   +    A   F +M  R I P  +
Sbjct: 780 HGKVIEARELFDDMVDK-KLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTL 838

Query: 359 SYTTLMKAF-ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           +YT+L+ ++  + ++ K+ + +F +M     +  D +A+ ++   YC+ G   EA +++ 
Sbjct: 839 TYTSLLLSYNQIGNRFKMIS-LFKDM-EARGIACDAIAYGVMASAYCKEGKSLEALKLLN 896

Query: 418 R 418
           +
Sbjct: 897 K 897



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 147/356 (41%), Gaps = 48/356 (13%)

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV--- 233
           N G     D + EKLL      + +PPL          I  +L++ Y   G  + TV   
Sbjct: 132 NSGLIHQADNMLEKLLQ-----TRKPPL---------EILDSLVRCYREFGGSNLTVFDI 177

Query: 234 -----RMLGAMRRQED-------NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
                R+LG +                P  +    ++  L+KA  M    +V   M    
Sbjct: 178 FIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAK 237

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           +  +  TY  ++K +C+   + K K +L EM  + K  P++ +YN  I G         A
Sbjct: 238 IVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECK--PNLFTYNAFIGGLCQTGAVDEA 295

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L     M  +G+ P   +YT L+  F    + K A  +F+ M     +  +   +  L++
Sbjct: 296 LEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM-PSSGLNPNRFTYTALID 354

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           G+ + G +EEA RI + M   G   NV TY ++  GI+ A +  +A+ L+ E+       
Sbjct: 355 GFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM------- 407

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                    L   ++PD    + L D  +++    KA E++A M+   + P+   Y
Sbjct: 408 ---------LMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 154/383 (40%), Gaps = 40/383 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G +P ++A+S ++  L+ +G       V L         KF    +V    PD   
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFL---------KFLKTGVV----PDVFL 663

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL--VFVLER 118
           YN++++     G  +K  QL+D+M   G  P+++ YN +I         +L     + + 
Sbjct: 664 YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDE 723

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN- 177
           ++  GI+     +  L+      G+LE A ++    ++           L ++ +     
Sbjct: 724 MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSL-IDSFCKHGK 782

Query: 178 --EGDDDDDDEVFEKLLPNSINPS--------------SEPPLL---PKTFAPNSRIYTT 218
             E  +  DD V +KL PN +  +              +E   L    +   PN+  YT+
Sbjct: 783 VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 842

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+  Y    ++ +  +M+   +  E      D + Y  + SA  K G    A ++L +  
Sbjct: 843 LLLSY---NQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSL 899

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+      ++ L+   C++ QI    ELL EM  + ++     + N L+ GF    + 
Sbjct: 900 VEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKE-ELSLSSKTCNTLLLGFYKSGNE 958

Query: 339 AGALTFFNEMRARGIAPTKISYT 361
             A      M+  G  PT +S T
Sbjct: 959 DEASKVLGVMQRLGWVPTSLSLT 981


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 178/394 (45%), Gaps = 57/394 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   Y +++N     G  ++ L+LF++      KPD++ YN ++K LC +    H L  
Sbjct: 252 PDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQ- 310

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V+  ++E G    + T+  ++      G++  A  ++                       
Sbjct: 311 VMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVM----------------------- 347

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                    +D + +  LP+                     + T++ GY    ++   ++
Sbjct: 348 ---------NDAIVKGYLPDVFT------------------FNTMIDGYCKRLKLDSALQ 380

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++    R       PD +TY +V++ L KAG      +   EM   G   N ITYNIL++
Sbjct: 381 LV---ERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIE 437

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C+  Q+++A  ++  M+ D  + PD +S+N LI GF    D  GA   F ++  +G +
Sbjct: 438 NFCKINQLEEASGVIVRMSQDGLV-PDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYS 496

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            T  ++  L+ A++     ++A K+F EM+     K D+  + +LV+G C+   V+ A  
Sbjct: 497 ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGY-KPDLYTYRVLVDGSCKAANVDRAYV 555

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            +  M   GF P++AT+G + N +++  +  EA+
Sbjct: 556 HLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAV 589



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 198/447 (44%), Gaps = 50/447 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR---VRKFSDPDIVSDSKPD 57
           MLR    P V  ++ V+  L   GD   +ES  L   V+KR   V KF+           
Sbjct: 106 MLRRDVFPDVATFNNVLHALCQKGD--IMESGALLAKVLKRGMSVNKFT----------- 152

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
               N  +      G+ ++ + L + M  + A PDV+TYN +++   + S+       L 
Sbjct: 153 ---CNIWIRGLCEGGRLEEAVALVESMDAYIA-PDVVTYNTLMRGLCKDSKVQEAAQYLR 208

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREG----RRDVCKIIRELDLED 172
           R++  G      T+ +++  Y     L E  E +  A+ +G    R   C +I  L    
Sbjct: 209 RMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLC--- 265

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                EGD +   E+F +                K   P+  +Y +L+KG   +G +   
Sbjct: 266 ----AEGDVERALELFNEAQA-------------KDLKPDLVVYNSLVKGLCRQGLI--- 305

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +  L  M    ++  HPD  TY  V++ L K G++  A  V+ +    G   +  T+N +
Sbjct: 306 LHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTM 365

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + GYC++L++D A +L+  M     I PD ++YN +++G      +      F EM  +G
Sbjct: 366 IDGYCKRLKLDSALQLVERMWMYG-IAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKG 424

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  I+Y  L++ F   +Q + A+ V   M +D  V  D +++N L+ G+CR G ++ A
Sbjct: 425 CRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVP-DTISFNTLIHGFCRNGDLDGA 483

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
             + +++ E G+     T+  L    S
Sbjct: 484 YLLFQKLDEKGYSATADTFNILIGAYS 510



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 178/395 (45%), Gaps = 21/395 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   AYNA+++A  N     +  +++ +M   G  PD  T+ V IK      R H+ + +
Sbjct: 8   PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRL 67

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G  +    + ++V      G    A  +   M   RRDV   +   +   ++ 
Sbjct: 68  LRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEML--RRDVFPDVATFNNVLHAL 125

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +GD  +   +  K+L   ++ +         F  N  I     +G    GR+ + V +
Sbjct: 126 CQKGDIMESGALLAKVLKRGMSVNK--------FTCNIWI-----RGLCEGGRLEEAVAL 172

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           + +M    D    PD VTY T++  L K   +  A Q L  M   G   +  TYN ++ G
Sbjct: 173 VESM----DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDG 228

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++  + +A ELL++      + PD V+Y  LI+G     D   AL  FNE +A+ + P
Sbjct: 229 YCKRDMLQEATELLKDAIFKGFV-PDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKP 287

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             + Y +L+K          A +V +EM+ D     DI  +N+++ G C+MG + +A  +
Sbjct: 288 DLVVYNSLVKGLCRQGLILHALQVMNEMVEDG-CHPDIWTYNIVINGLCKMGNISDAAVV 346

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           +      G+ P+V T+ ++ +G     K   AL L
Sbjct: 347 MNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQL 381



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 67/319 (21%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GYLP V  ++T++        DG  + +KL D  ++ V +     I     PD   YN+V
Sbjct: 354 GYLPDVFTFNTMI--------DGYCKRLKL-DSALQLVERMWMYGIA----PDAITYNSV 400

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           LN     GK K+  + F++M   G +P+ +TYN++I+   + ++      V+ R+ + G+
Sbjct: 401 LNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGL 460

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                +F +L+  +   GDL+ A  + Q + E                            
Sbjct: 461 VPDTISFNTLIHGFCRNGDLDGAYLLFQKLDE---------------------------- 492

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                                 K ++  +  +  L+  Y ++  +    ++ G M  +  
Sbjct: 493 ----------------------KGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISK-- 528

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD  TY  +V    KA ++DRA   LAEM   G   +  T+  +L       ++ +
Sbjct: 529 -GYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSE 587

Query: 305 AKELLREMADDAKIEPDVV 323
           A  ++  M     + P+VV
Sbjct: 588 AVAIIHIMV-RMGVVPEVV 605


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 202/436 (46%), Gaps = 40/436 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR GY   + A++ ++  LA   D    ++ K+F+ + +R             +PDT  
Sbjct: 214 MLRCGYSLDIFAFNMLLDALAK--DQKVDKAYKVFEDMKRR-----------HCEPDTFT 260

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++      GK  + L LF  M E G   +++ YN MI+  A+       V +  +++
Sbjct: 261 YTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMV 320

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDVCKIIRELDLEDYSSENE 178
           E G      T+  L+   V  G L   + IV+  ++   ++     +R L    +SSE  
Sbjct: 321 ENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAH 380

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                      +L  N  N   +          +   Y ++++   + G++++ + +L  
Sbjct: 381 -----------RLFCNMWNVHDKG---------DKDAYMSMLESLCSSGKIAEAIDLLN- 419

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
             R  +     D + Y TV +AL +   +     +  +M + G P +  TYNIL+  Y +
Sbjct: 420 --RFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGR 477

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++D A ++  E+ +++  +PDV+SYN LI+      D   A   F EM+ +G+ P  +
Sbjct: 478 AGRVDSAVKIFEEL-ENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVV 536

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y+TL++ F  + + ++A  +FDEM+ +     ++V +N+L++   R G   EA  +  +
Sbjct: 537 TYSTLIECFGKTDKVEMACSLFDEMIAEG-CSPNLVTYNILLDCLERSGRTAEAVDLYAK 595

Query: 419 MKENGFYPNVATYGSL 434
           +K+ G  P+  TY  L
Sbjct: 596 LKQQGLTPDSITYAVL 611



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 104/523 (19%), Positives = 199/523 (38%), Gaps = 92/523 (17%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           K D   YN +    +      +F Q   L D M + G K  + T N++I       R   
Sbjct: 118 KNDPFIYNRLFLTLSRSSSQLRFEQTESLLDDMEKRGVKGSISTVNILIGFFGDLDR--- 174

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI-VQAMREGRR-DVCKIIRELD 169
               +  + + G+     +++ L+  Y+   D + A  + +  +R G   D+      LD
Sbjct: 175 ---CVGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLD 231

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPK 207
               +   +   D   +VFE +      P +                         +L K
Sbjct: 232 ----ALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEK 287

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
            F  N   Y T+++  + +GR++D   +L    +  +N   P+  TY+ +++ LV  G +
Sbjct: 288 GFTLNLIAYNTMIEA-LAKGRMADKAVLL--FSKMVENGCQPNEFTYSVLLNVLVAEGQL 344

Query: 268 DR--------------------------------ARQVLAEMTRIGVPANRITYNILLKG 295
           ++                                A ++   M  +    ++  Y  +L+ 
Sbjct: 345 NKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLES 404

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +I +A +LL    +   I  D + YN +      +   +     + +M+  G  P
Sbjct: 405 LCSSGKIAEAIDLLNRFHEKC-ITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPP 463

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +Y  L+ ++  + +   A K+F+E L +   + D++++N L+    + G V+EA   
Sbjct: 464 DIFTYNILISSYGRAGRVDSAVKIFEE-LENSNCQPDVISYNSLINCLGKNGDVDEAHMR 522

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKKEGVNADSDLPPP 474
            + M+E G  P+V TY +L        K   A  L+ E I E C              P 
Sbjct: 523 FKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCS-------------PN 569

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           L     LLD L     R+    +A+++ A +++ G+ P+   Y
Sbjct: 570 LVTYNILLDCLE----RSGRTAEAVDLYAKLKQQGLTPDSITY 608



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/305 (20%), Positives = 122/305 (40%), Gaps = 24/305 (7%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  L+     + +V    ++   M+R+      PD  TYT ++    KAG  D +  +  
Sbjct: 226 FNMLLDALAKDQKVDKAYKVFEDMKRRH---CEPDTFTYTIMIRMTGKAGKTDESLALFQ 282

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   N I YN +++   +    DKA  L  +M ++   +P+  +Y++L++  ++ 
Sbjct: 283 AMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENG-CQPNEFTYSVLLN-VLVA 340

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           +     L    EM  + +   K  Y   ++  +       A+++F  M  +   K D  A
Sbjct: 341 EGQLNKLDNIVEMSKKYM--NKQIYAYFVRTLSKLGHSSEAHRLFCNMW-NVHDKGDKDA 397

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  ++E  C  G + EA  ++ R  E     +   Y ++   +   ++      L++++K
Sbjct: 398 YMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMK 457

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +             D PP   PD    + L     RA     A++I   +E     P+  
Sbjct: 458 Q-------------DGPP---PDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVI 501

Query: 516 KYKKI 520
            Y  +
Sbjct: 502 SYNSL 506


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 184/413 (44%), Gaps = 56/413 (13%)

Query: 81  FDQMHEF-GAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
           F   H+  G  P+ +T+  +IK LC +      L+F  + ++ MG  L    + +L+   
Sbjct: 114 FQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLF-HDNVVAMGFQLDQVGYGTLIH-- 170

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
              G  ++ ET  +A  +  R V   + + ++  YS+  +G   D      K + ++ + 
Sbjct: 171 ---GLCKVGET--RAALDLLRRVDGNLVQPNVVMYSTIIDGMCKD------KHVNDAFDL 219

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
            SE  ++ K  +PN   Y+ L+ G+   G++ D + +   M  +      PD  T+  +V
Sbjct: 220 YSE--MVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIK---PDVYTFNILV 274

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
               K G M   + V A M + G+  N +TY  L+ GYC   +++KAK +L  M+    +
Sbjct: 275 DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRG-V 333

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            PD+ SYNILIDGF  I     A+  F EM  + I P  ++Y +L+       +   A K
Sbjct: 334 NPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALK 393

Query: 379 VFDEM----------------------------------LRDPRVKVDIVAWNMLVEGYC 404
           + DEM                                  L+D  ++ ++  + +L++G C
Sbjct: 394 LVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLC 453

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           + G +E+A  I E +   G+   V TY  + +G        EAL L  ++K+ 
Sbjct: 454 KGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDN 506



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 21/302 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+ G     +V +T   L  +RR + N   P+ V Y+T++  + K   ++ A  + +
Sbjct: 165 YGTLIHGLC---KVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYS 221

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM   G+  N +TY+ L+ G+    Q+  A +L  +M  +  I+PDV ++NIL+DGF   
Sbjct: 222 EMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILE-NIKPDVYTFNILVDGFCKD 280

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                  T F  M  +GI P  ++Y +LM  + L  +   A  +   M     V  DI +
Sbjct: 281 GKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM-SQRGVNPDIQS 339

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L++G+C++  V+EA  + + M      P+V TY SL +G+    K   AL L  E+ 
Sbjct: 340 YNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMH 399

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +R      GV      PP +     +LDAL     +     KA+ ++  +++ GI PN  
Sbjct: 400 DR------GV------PPDIITYSSILDALC----KNHQVDKAIALLTKLKDQGIRPNMY 443

Query: 516 KY 517
            Y
Sbjct: 444 TY 445



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 148/292 (50%), Gaps = 21/292 (7%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           HP+ +T+TT++  L   G + +A      +  +G   +++ Y  L+ G C+  +   A +
Sbjct: 124 HPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALD 183

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           LLR + D   ++P+VV Y+ +IDG         A   ++EM ++GI+P  ++Y+ L+  F
Sbjct: 184 LLRRV-DGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               Q K A  +F++M+ +  +K D+  +N+LV+G+C+ G ++E K +   M + G  PN
Sbjct: 243 FTVGQLKDAIDLFNKMILE-NIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPN 301

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKER----------------CEVKK--EGVNADS 469
           V TY SL +G  L ++  +A  +   + +R                C++KK  E +N   
Sbjct: 302 VVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFK 361

Query: 470 DL-PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++    + PD    ++L D   +      AL++V  M + G+PP+   Y  I
Sbjct: 362 EMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSI 413



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 168/383 (43%), Gaps = 72/383 (18%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  +ST++  +     D  V     FD+  + V K   P++V+        Y+A+++ 
Sbjct: 195 PNVVMYSTIIDGMCK---DKHVNDA--FDLYSEMVSKGISPNVVT--------YSALISG 241

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
              +G+ K  + LF++M     KPDV T+N+++    +  +      V   +++ GI   
Sbjct: 242 FFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPN 301

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
           + T+ SL+  Y    ++  A++I+  M +  R V       D++ Y+   +G        
Sbjct: 302 VVTYCSLMDGYCLVKEVNKAKSILYTMSQ--RGV-----NPDIQSYNILIDG-------- 346

Query: 188 FEKL--LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           F K+  +  ++N   E  +  K   P+   Y +L+ G    G++S  ++++  M    D 
Sbjct: 347 FCKIKKVDEAMNLFKE--MHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMH---DR 401

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL------------ 293
              PD +TY++++ AL K   +D+A  +L ++   G+  N  TY IL+            
Sbjct: 402 GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDA 461

Query: 294 -----------------------KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                                   G+C +   D+A  LL +M D++ I PD V+Y I+I 
Sbjct: 462 HNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCI-PDAVTYEIIIR 520

Query: 331 GFILIDDSAGALTFFNEMRARGI 353
                D++  A     EM  RG+
Sbjct: 521 SLFDKDENDKAEK-LREMITRGL 542


>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 981

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 203/463 (43%), Gaps = 74/463 (15%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLL 112
           ++PD   YN +L+AC N G   +  QL ++M +    + D +TYN +IK C R  R +  
Sbjct: 388 NQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDA 447

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           + + E +  +GI     +F SL+ + V    + IA    + MR+                
Sbjct: 448 LNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRK---------------- 491

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY-MNEGRVSD 231
                                       +  + P  F      Y+ L+ G   N     +
Sbjct: 492 ----------------------------QYGIFPDNFT-----YSILVNGIKTNHSNRDE 518

Query: 232 TVRMLGAMRR-QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
            +R +  + + QE     PD + Y +++ A VK   + +  ++  EM    +  + +TY 
Sbjct: 519 LLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYG 578

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           IL+K Y +Q  ++ A ++  EM    KI  + V+Y  L+D  +  D    AL F ++M++
Sbjct: 579 ILIKAYGKQNDLNGAFKIFEEMKQ-KKIPINDVTYGCLVDACVRNDRLDQALQFIDQMKS 637

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + +    + YTT++K F   +Q + A K FD M + P+   +++ +N L++G  + GL+ 
Sbjct: 638 QNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSPKTYPNLITYNSLLDGMVKNGLLN 697

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A ++ + + ++   P++ T+ +L  G    RK        K + E  ++   G+     
Sbjct: 698 QADKLFQELVDSKIKPDLITFSTLLKG--HCRKGN-----MKRLNETVQIMT-GL----- 744

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIV--ACMEEHGIP 511
               + PDE LL  + + C+    +   ++I    C   H IP
Sbjct: 745 ---QISPDESLLQLILEACLNQQQYHIGVQIFDQFC---HQIP 781



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 117/273 (42%), Gaps = 49/273 (17%)

Query: 247 SHPDHVTYTTVVSALVKAGSMDR--ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           + PD+ TYTT+++ L  + +MD   A  +  E  +   P ++I YN LL        +++
Sbjct: 352 TKPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYKQYNQP-DQIIYNCLLDACINAGDLNR 410

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
             +LL EM     I+ D ++YN LI G         AL  F EM+  GI P +IS+ +L+
Sbjct: 411 GFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLL 470

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            +    ++  +A + F+EM                                    K+ G 
Sbjct: 471 DSCVKCNKMNIAWRYFEEM-----------------------------------RKQYGI 495

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
           +P+  TY  L NGI       + LL    + E  ++++ G           KPDE L ++
Sbjct: 496 FPDNFTYSILVNGIKTNHSNRDELLRAITLLE--QIQETG---------QFKPDEILYNS 544

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           L D CV+    +K +E+   M+   I P+   Y
Sbjct: 545 LIDACVKFNEIQKGMELFREMKNKQIEPSSVTY 577


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 123/548 (22%), Positives = 234/548 (42%), Gaps = 65/548 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M+  G+ P   A S +V  L   G  DD        +++VVK V +F          P+ 
Sbjct: 321 MVELGFSPTEAAVSGLVDGLRKQGKIDDA-------YELVVK-VGRFG-------FVPNL 365

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YNA++N+    G   K   L+  M     +P+ +TY+++I    R+ R  + +   +R
Sbjct: 366 FVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDR 425

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETI-VQAMREGRRDVCKIIRELDLEDYSSEN 177
           +++ GI   +  + SL+     FGDL  AE++ ++   +G          L +  Y  + 
Sbjct: 426 MIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSL-ISGYCKDL 484

Query: 178 EGDDDDDDEVFEKLLPNSINP--------------------SSE--PPLLPKTFAPNSRI 215
           +       +++ K++ N I P                    +SE    L+ +   P    
Sbjct: 485 Q--VQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVT 542

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L++GY  +G++     +L  M ++      PD  TY  ++S L   G + +A+  + 
Sbjct: 543 YNVLIEGYCRDGKIDKAFELLEDMHQK---GLVPDTYTYRPLISGLCSTGRVSKAKDFID 599

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           ++ +  V  N + Y+ LL GYCQ+ ++ +A     EM     I  D+V + +LIDG +  
Sbjct: 600 DLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRG-INMDLVCHAVLIDGALKQ 658

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            D         +M  +G+ P  + YT+++  ++     K A + +D M+ +     ++V 
Sbjct: 659 PDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFP-NVVT 717

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +  L+ G C+ G ++ A  + +RM+     PN  TYG   + ++   K G          
Sbjct: 718 YTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLT---KEGNM-------- 766

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                 KE +     +   L  +    + +     +   F +A ++++ M E+GI P+  
Sbjct: 767 ------KEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCV 820

Query: 516 KYKKIYVE 523
            Y  +  E
Sbjct: 821 TYSTLIYE 828



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 185/459 (40%), Gaps = 53/459 (11%)

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G   DV+TY  ++    R  +    + +++ ++E+G +        LV      G ++ A
Sbjct: 290 GLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDA 349

Query: 148 -ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
            E +V+  R G      +   L     +S  +G D D  E+            S   L+ 
Sbjct: 350 YELVVKVGRFGFVPNLFVYNAL----INSLCKGGDLDKAELL----------YSNMSLM- 394

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
               PN   Y+ L+  +   GR+   +      R  +D      +  Y ++++   K G 
Sbjct: 395 -NLRPNGITYSILIDSFCRSGRLDVAISYFD--RMIQDGIGETVY-AYNSLINGQCKFGD 450

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A  +  EMT  GV     T+  L+ GYC+ LQ+ KA +L  +M D+  I P+V ++ 
Sbjct: 451 LSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNG-ITPNVYTFT 509

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LI G    +  A A   F+E+  R I PT+++Y  L++ +    +   A ++ ++M + 
Sbjct: 510 ALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQK 569

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V  D   +  L+ G C  G V +AK  I+ + +     N   Y +L +G     +  E
Sbjct: 570 GLVP-DTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLME 628

Query: 447 ALLLWKEIKERCEVKKEGVNA---------DSDLPPP----------------LKPDEEL 481
           AL         CE+ + G+N          D  L  P                L+PD  +
Sbjct: 629 AL------SASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVI 682

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             ++ D   +   F+KA E    M      PN   Y  +
Sbjct: 683 YTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTAL 721



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 143/373 (38%), Gaps = 86/373 (23%)

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           + D +R    +R  E N      VTY  ++  L K   +  A +V   +   G+ A+ +T
Sbjct: 238 LKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVT 297

Query: 289 YNILLKGYCQQLQIDKAKELLREMA------------------------DDA-------- 316
           Y  L+ G+C+  Q +   +L+ EM                         DDA        
Sbjct: 298 YCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVG 357

Query: 317 --KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
                P++  YN LI+      D   A   ++ M    + P  I+Y+ L+ +F  S +  
Sbjct: 358 RFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLD 417

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG--------------------------- 407
           +A   FD M++D  +   + A+N L+ G C+ G                           
Sbjct: 418 VAISYFDRMIQDG-IGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSL 476

Query: 408 --------LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
                    V++A ++  +M +NG  PNV T+ +L +G+    K  EA  L+ E+ ER  
Sbjct: 477 ISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVER-- 534

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                          +KP E   + L +   R     KA E++  M + G+ P+   Y+ 
Sbjct: 535 --------------KIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRP 580

Query: 520 IYVEMHSRMFTSK 532
           +   + S    SK
Sbjct: 581 LISGLCSTGRVSK 593



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 112/239 (46%), Gaps = 5/239 (2%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  L++ Y+   R+ D V ++  M     N   P+  T + +++ L+K        ++  
Sbjct: 158 FNLLVQNYVLSSRIFDAVVIVKLMFA---NNLLPEVRTLSALLNGLLKVRKFITVWELFD 214

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           E    GV  +  T + +++  C+     +AKE +R M  +   +  +V+YN+LI G    
Sbjct: 215 ESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANG-FDLSIVTYNVLIHGLCKG 273

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           D  + A+     +  +G+A   ++Y TL+  F    Q +   ++ DEM+       +  A
Sbjct: 274 DRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTE-AA 332

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + LV+G  + G +++A  ++ ++   GF PN+  Y +L N +       +A LL+  +
Sbjct: 333 VSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNM 391



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 104/233 (44%), Gaps = 9/233 (3%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +      P  R  + L+ G +   +V   + +        +    PD  T + VV ++ +
Sbjct: 181 MFANNLLPEVRTLSALLNGLL---KVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCE 237

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
                RA++ +  M   G   + +TYN+L+ G C+  ++ +A E+ R +     +  DVV
Sbjct: 238 LKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKG-LAADVV 296

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  L+ GF  +      +   +EM   G +PT+ + + L+    L  Q K+ +  ++ +
Sbjct: 297 TYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVD--GLRKQGKI-DDAYELV 353

Query: 384 LRDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           ++  R     ++  +N L+   C+ G +++A+ +   M      PN  TY  L
Sbjct: 354 VKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSIL 406



 Score = 42.0 bits (97), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 45/238 (18%), Positives = 94/238 (39%), Gaps = 20/238 (8%)

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
           ++ + +N+L++ Y    +I  A  +++ M  +  + P+V + + L++G + +        
Sbjct: 153 SSTLGFNLLVQNYVLSSRIFDAVVIVKLMFAN-NLLPEVRTLSALLNGLLKVRKFITVWE 211

Query: 344 FFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            F+E    G+ P   + + ++++   L    +   K+    +      + IV +N+L+ G
Sbjct: 212 LFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKI--RWMEANGFDLSIVTYNVLIHG 269

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
            C+   V EA  +   +   G   +V TY +L  G    ++    + L  E+ E      
Sbjct: 270 LCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVEL----- 324

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                         P E  +  L D   +      A E+V  +   G  PN   Y  +
Sbjct: 325 -----------GFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNAL 371



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P    +ST++     SG+ G   SVKL+D ++ R             +PD  A
Sbjct: 810 MTENGIFPDCVTYSTLIYEYCRSGNVGA--SVKLWDTMLNR-----------GLEPDLVA 856

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           YN ++  C   G+  K  +L D M   G  PD
Sbjct: 857 YNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 33/233 (14%)

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM-RARGIAPTKISY 360
           I + K+  +   +DA I   +  +++       +DD+  AL FFN +   + +  +  SY
Sbjct: 47  IVRGKQSWKVAFNDASISSTLRPHHVEQVLMNTLDDAKLALRFFNFLGLHKNMNHSTTSY 106

Query: 361 TTLMKAFALSSQPKLANKVFDEML-RDPRVKV---------------DIVAWNMLVEGYC 404
             ++ A   S     AN +   +L R+   K                  + +N+LV+ Y 
Sbjct: 107 AIMVHALVHSRLFWPANSLLHTLLLRESHPKCVFSHFLDSYKRCKFSSTLGFNLLVQNYV 166

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG 464
               + +A  I++ M  N   P V T  +L NG+   RK    + +W       E+  E 
Sbjct: 167 LSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRK---FITVW-------ELFDES 216

Query: 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           VNA       ++PD     A+         F +A E +  ME +G   +   Y
Sbjct: 217 VNAG------VRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTY 263


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 181/402 (45%), Gaps = 56/402 (13%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFV 115
           D+A    V+ A    G+ +    LF +M E G  P+V+ Y   +  LC R   K     V
Sbjct: 215 DSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAF-HV 273

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE ++  G+   + T  SL+                         +CKI           
Sbjct: 274 LEEMVGKGLKPNVYTHTSLIDG-----------------------LCKI----------- 299

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +    +F KL+ +S            ++ PN   YT ++ GY  EG+++    +
Sbjct: 300 ---GWTERAFRLFLKLVKSS------------SYKPNVHTYTVMIGGYCKEGKLARAEML 344

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           LG M  Q      P+  TYTT++    + GS DRA +++ +M   G   N  TYN ++ G
Sbjct: 345 LGRMVEQ---GLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGG 401

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C++ +I +A ++LR MA    + PD V+Y +LI           AL  FN+M      P
Sbjct: 402 FCKKGKIQQAYKVLR-MATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHP 460

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +YTT++  +    Q + + ++FD+ L    V      +  ++ GYCR+G    A ++
Sbjct: 461 DIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTK-QTYTSMIAGYCRVGKSTSALKV 519

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            ERM ++G  P+  TYG+L +G+    +  EA  L++ + ++
Sbjct: 520 FERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDK 561



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 156/381 (40%), Gaps = 56/381 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P+   Y A ++     G  K+   + ++M   G KP+V T+  +I  LC     +     
Sbjct: 249 PNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRL 308

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            L+ +        + T+  ++  Y   G L  AE ++  M E                  
Sbjct: 309 FLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVE------------------ 350

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                           +  APN+  YTTL+ G+   G       
Sbjct: 351 --------------------------------QGLAPNTNTYTTLIDGHCRGGSFDRAFE 378

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M+ +      P+  TY  ++    K G + +A +VL   T  G+  +++TY +L+ 
Sbjct: 379 LMNKMKLE---GFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLIT 435

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C+Q  I  A +L  +MA+++   PD+ +Y  +I  +        +   F++  + G+ 
Sbjct: 436 EHCKQGHITYALDLFNQMAENS-CHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLV 494

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PTK +YT+++  +    +   A KVF+ M++   +  D + +  L+ G C+   +EEA+ 
Sbjct: 495 PTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLP-DPITYGALISGLCKESRLEEARA 553

Query: 415 IIERMKENGFYPNVATYGSLA 435
           + E M +    P   T  +LA
Sbjct: 554 LFETMLDKHMVPCDVTCVTLA 574



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F+ +S   T +++ +  +GR  D   + G   R  +  + P+ V YT  V  L K G + 
Sbjct: 212 FSLDSATCTVVVRAFCRQGRFRDVPGLFG---RMVEMGNPPNVVNYTAWVDGLCKRGYVK 268

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  VL EM   G+  N  T+  L+ G C+    ++A  L  ++   +  +P+V +Y ++
Sbjct: 269 QAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVM 328

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G+      A A      M  +G+AP   +YTTL+           A ++ ++M  +  
Sbjct: 329 IGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGF 388

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           +  +I  +N ++ G+C+ G +++A +++      G  P+  TY  L
Sbjct: 389 LP-NIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTML 433



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 6/229 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++R +  L+ G   EGR  +   +L AM R+  +    D  T T VV A  + G     
Sbjct: 179 PDARSFRALVLGCCQEGRFEEADALLAAMWREGFSL---DSATCTVVVRAFCRQGRFRDV 235

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +   M  +G P N + Y   + G C++  + +A  +L EM     ++P+V ++  LID
Sbjct: 236 PGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKG-LKPNVYTHTSLID 294

Query: 331 GFILIDDSAGALTFFNEM-RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           G   I  +  A   F ++ ++    P   +YT ++  +    +   A  +   M+ +  +
Sbjct: 295 GLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV-EQGL 353

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
             +   +  L++G+CR G  + A  ++ +MK  GF PN+ TY ++  G 
Sbjct: 354 APNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGF 402



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/407 (19%), Positives = 174/407 (42%), Gaps = 30/407 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLV 113
           KP+   + ++++    +G  ++  +LF ++ +  + KP+V TY VMI    +  +     
Sbjct: 283 KPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAE 342

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLED 172
            +L R++E G+     T+ +L+  +   G  + A  ++  M+ EG           ++  
Sbjct: 343 MLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLP--------NIYT 394

Query: 173 YSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           Y++   G        + ++ L   +           +   P+   YT L+  +  +G ++
Sbjct: 395 YNAIIGGFCKKGKIQQAYKVLRMAT----------SQGLCPDKVTYTMLITEHCKQGHIT 444

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             + +   M    +N+ HPD  TYTT+++   +   M++++Q+  +   IG+   + TY 
Sbjct: 445 YALDLFNQM---AENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYT 501

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++ GYC+  +   A ++   M     + PD ++Y  LI G         A   F  M  
Sbjct: 502 SMIAGYCRVGKSTSALKVFERMVQHGCL-PDPITYGALISGLCKESRLEEARALFETMLD 560

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + + P  ++  TL   +    +  +A    D +  D R +    A + LV     +  ++
Sbjct: 561 KHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGL--DKRQQAH--AADALVRKLSAVDNLD 616

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            A   ++ + +  +  + ATY S  N    + +   A  + ++I +R
Sbjct: 617 AASLFLKNVLDKHYAVDHATYTSFINSCYESNRYALASEISEKISKR 663



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 109/274 (39%), Gaps = 30/274 (10%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLK-GYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           A  +L E+   G+P    T N +L+ G  Q+     A    R+  D   + PD  S+  L
Sbjct: 132 ATDMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHA----RQAFDGMGVRPDARSFRAL 187

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR--D 386
           + G         A      M   G +    + T +++AF    + +    +F  M+   +
Sbjct: 188 VLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGN 247

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
           P   V+  AW   V+G C+ G V++A  ++E M   G  PNV T+ SL +G+        
Sbjct: 248 PPNVVNYTAW---VDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTER 304

Query: 447 ALLLWKEIKERCEVK--------------KEGVNADSDL------PPPLKPDEELLDALA 486
           A  L+ ++ +    K              KEG  A +++         L P+      L 
Sbjct: 305 AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D   R   F +A E++  M+  G  PN   Y  I
Sbjct: 365 DGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAI 398



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 17/152 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+LP++  ++ ++      G               K +R  +   +     PD   Y  +
Sbjct: 387 GFLPNIYTYNAIIGGFCKKGK---------IQQAYKVLRMATSQGLC----PDKVTYTML 433

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +      G     L LF+QM E    PD+ TY  +I +  +  +      + ++ L +G+
Sbjct: 434 ITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGL 493

Query: 125 TLCMTTFQSLVAAYVGFGD----LEIAETIVQ 152
                T+ S++A Y   G     L++ E +VQ
Sbjct: 494 VPTKQTYTSMIAGYCRVGKSTSALKVFERMVQ 525


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 201/457 (43%), Gaps = 68/457 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P+V   +T++  L   G              + +  +F D  +      +  +
Sbjct: 133 ILKMGYEPNVITLTTLIKGLCLKGQ-------------IHQALQFHDKVVALGFHLNKVS 179

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G+    LQL  ++     +P+V+ YN +I    +    +    +   ++
Sbjct: 180 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 239

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T+ +L++ +   G ++                                   
Sbjct: 240 SKGISPDVVTYNALISGFCIVGKMK----------------------------------- 264

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D  ++F K++  +IN             PN   +  L+ G+  E R+ +   +L  M 
Sbjct: 265 --DATDLFNKMIFENIN-------------PNVYTFNILVDGFCKERRLKEAKNVLAMMM 309

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q      PD  TY +++        +++A+ +   +++ GV  N  +Y+I++ G+C+  
Sbjct: 310 KQ---GIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIK 366

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+A  L +EM  +  I PDVV+YN LIDG   +   + AL   +EM  RG+   KI+Y
Sbjct: 367 KVDEAMNLFKEMHCN-NIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITY 425

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++ A   + Q   A  +  +M +D  ++ DI  +  LV+G C+ G +E+A+ + E + 
Sbjct: 426 NSILDALCKNHQVDKAIALLTKM-KDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLL 484

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             G+  +V  Y ++  G        E+L L  +++E 
Sbjct: 485 VKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEEN 521



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 215/472 (45%), Gaps = 38/472 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D    + ++N  + LG+      +  ++ + G +P+V+T   +IK LC +      L F 
Sbjct: 106 DLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQF- 164

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            ++++ +G  L   ++ +L+      G    A  ++      RR   K+++  ++  Y++
Sbjct: 165 HDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLL------RRVDGKLVQP-NVVMYNT 217

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                   D     KL+  + +  SE  ++ K  +P+   Y  L+ G+   G++ D   +
Sbjct: 218 I------IDSMCKVKLVNEAFDLYSE--MVSKGISPDVVTYNALISGFCIVGKMKDATDL 269

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +  N   P+  T+  +V    K   +  A+ VLA M + G+  +  TYN L+  
Sbjct: 270 FNKMIFENIN---PNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDR 326

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC   +++KAK +   ++    + P++ SY+I+I GF  I     A+  F EM    I P
Sbjct: 327 YCLVKEVNKAKHIFNTISQRG-VNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIP 385

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y +L+       +   A K+ DEM  D  V  D + +N +++  C+   V++A  +
Sbjct: 386 DVVTYNSLIDGLCKLGKISYALKLVDEM-HDRGVPHDKITYNSILDALCKNHQVDKAIAL 444

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           + +MK+ G  P++ TY +L +G+    +  +A ++++++                L    
Sbjct: 445 LTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDL----------------LVKGY 488

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
             D  +  A+         F ++L++++ MEE+G  PN   Y+ I   +  +
Sbjct: 489 ILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDK 540



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 177/404 (43%), Gaps = 73/404 (18%)

Query: 173 YSSENEGDDDDDDEV--FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           YS  +E DD+  + V  F +LL    NP       P  F      +  ++   +     S
Sbjct: 42  YSQFHENDDNKHNLVSSFNRLLHQK-NPK------PSIFQ-----FGKILGSLVKSNHYS 89

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             V +    R+ E N    D V  + +++   + G    +  VLA++ ++G   N IT  
Sbjct: 90  TVVSL---HRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLT 146

Query: 291 ILLKGYCQQLQIDK-----------------------------------AKELLREMADD 315
            L+KG C + QI +                                   A +LLR + D 
Sbjct: 147 TLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRV-DG 205

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             ++P+VV YN +ID    +     A   ++EM ++GI+P  ++Y  L+  F +  + K 
Sbjct: 206 KLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKD 265

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A  +F++M+ +  +  ++  +N+LV+G+C+   ++EAK ++  M + G  P+V TY SL 
Sbjct: 266 ATDLFNKMIFE-NINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLM 324

Query: 436 NGISLARKPGEALLLWKEIKER----------------CEVKK--EGVNADSDLP-PPLK 476
           +   L ++  +A  ++  I +R                C++KK  E +N   ++    + 
Sbjct: 325 DRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNII 384

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           PD    ++L D   +      AL++V  M + G+P +K  Y  I
Sbjct: 385 PDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSI 428



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 159/382 (41%), Gaps = 69/382 (18%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKL----FDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           P+V  ++T++  +           VKL    FD+  + V K   PD+V+        YNA
Sbjct: 210 PNVVMYNTIIDSMC---------KVKLVNEAFDLYSEMVSKGISPDVVT--------YNA 252

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++    +GK K    LF++M      P+V T+N+++    +  R      VL  +++ G
Sbjct: 253 LISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQG 312

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I   + T+ SL+  Y    ++  A+ I   + +  R V   I    +  +        D+
Sbjct: 313 IKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQ--RGVNPNIHSYSIMIHGFCKIKKVDE 370

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR--- 240
              +F+++  N+I              P+   Y +L+ G    G++S  ++++  M    
Sbjct: 371 AMNLFKEMHCNNI-------------IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 417

Query: 241 -----------------------------RQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
                                        + +D    PD  TYTT+V  L K G ++ AR
Sbjct: 418 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDAR 477

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            V  ++   G   +   Y  +++G+C     D++ +LL +M ++  I P+ V+Y I+I  
Sbjct: 478 IVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCI-PNAVTYEIIICS 536

Query: 332 FILIDDSAGALTFFNEMRARGI 353
               D++  A     EM  RG+
Sbjct: 537 LFDKDENDKAEKLLREMITRGL 558


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 216/479 (45%), Gaps = 49/479 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+T  +N +LN     G+  + ++L D M      PD++T N ++       R    V 
Sbjct: 157 EPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVD 216

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++ R++  G      T+  ++      G+   A  +++ M   +     +   + +++  
Sbjct: 217 LIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLC 276

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +   DD             +++  SE  +  K    N   Y +L+  + + GR  D  +
Sbjct: 277 KDGRLDD-------------ALSFFSE--METKGIKANVFTYNSLIGSFCSFGRWDDGAQ 321

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M  ++     P+ VT++ ++ +LVK G +  A+ +  EM   G+  N ITYN L+ 
Sbjct: 322 LLRDMITRKIT---PNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIY 378

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C   ++D+A +++  M      +PD+ +YNILI+GF         +  F +M  RG+ 
Sbjct: 379 GLCNDKRLDEANQMMDLMVSKG-CDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMI 437

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++Y+TL++ F  S +  +A KVF EM+    V   I+ + +L++G C  G +EEA  
Sbjct: 438 ADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQG-VHPGIMTYAILLDGLCDNGELEEALG 496

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           I+++M +     ++  Y  + +G+  A K  +A  L+      C +  +GV  D      
Sbjct: 497 ILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLF------CSLPSKGVKRDIQSYNI 550

Query: 475 LKPDEELLDALADICVRA------AFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           +         L+ +C R+      A FRK       M+E G  P+   Y  + +  H R
Sbjct: 551 M---------LSGLCKRSSLSEADALFRK-------MKEDGYEPDGCTYNTL-IRAHLR 592



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 187/440 (42%), Gaps = 48/440 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +    A   +    L L  QM   G   D+ T N+MI    R  +       
Sbjct: 88  PTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSA 147

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR-----DVCKIIRELDL 170
           + +I ++G      TF +L+      G +  A  +V  M   +       +  I+  L L
Sbjct: 148 MGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCL 207

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           +D  SE         ++  +++ N   P             N   Y  ++      G   
Sbjct: 208 KDRVSEAV-------DLIARMMANGCQP-------------NQFTYGPILNRMCKSG--- 244

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +T   L  +R+ E     P  VTYT ++  L K G +D A    +EM   G+ AN  TYN
Sbjct: 245 NTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYN 304

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+  +C   + D   +LLR+M    KI P+VV+++ LID  +       A   +NEM  
Sbjct: 305 SLIGSFCSFGRWDDGAQLLRDMI-TRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMIT 363

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMG 407
           RGI P  I+Y +L+       +   AN++ D M+    DP    DI  +N+L+ G+C+  
Sbjct: 364 RGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDP----DIWTYNILINGFCKAK 419

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            V++  R+  +M   G   +  TY +L  G   +RK    L++ K++ +  E+  +GV+ 
Sbjct: 420 QVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRK----LIVAKKVFQ--EMVSQGVH- 472

Query: 468 DSDLPPPLKPDEELLDALAD 487
                P +     LLD L D
Sbjct: 473 -----PGIMTYAILLDGLCD 487



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 225/513 (43%), Gaps = 51/513 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR------------VRKFSDP 48
           + + GY P+   ++T+++ L   G     E+V+L D +V              V      
Sbjct: 151 IFKLGYEPNTVTFNTLLNGLCLEGR--VFEAVELVDCMVLSQHVPDLITLNTIVNGLCLK 208

Query: 49  DIVSDS------------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
           D VS++            +P+   Y  +LN     G     L L  +M     KP V+TY
Sbjct: 209 DRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTY 268

Query: 97  NVMI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
            ++I  LC        L F  E +   GI   + T+ SL+ ++  FG  +    +++ M 
Sbjct: 269 TIIIDNLCKDGRLDDALSFFSE-METKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMI 327

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
             R+    ++    L D S   EG   +  +++ +++   I P             N+  
Sbjct: 328 T-RKITPNVVTFSALID-SLVKEGKLTEAKDLYNEMITRGIEP-------------NTIT 372

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y +L+ G  N+ R+ +  +M+  M  +      PD  TY  +++   KA  +D   ++  
Sbjct: 373 YNSLIYGLCNDKRLDEANQMMDLMVSK---GCDPDIWTYNILINGFCKAKQVDDGMRLFR 429

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M+  G+ A+ +TY+ L++G+CQ  ++  AK++ +EM     + P +++Y IL+DG    
Sbjct: 430 KMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQG-VHPGIMTYAILLDGLCDN 488

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            +   AL   ++M    +      Y  ++     +++   A  +F   L    VK DI +
Sbjct: 489 GELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCS-LPSKGVKRDIQS 547

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+++ G C+   + EA  +  +MKE+G+ P+  TY +L            ++ L +E+K
Sbjct: 548 YNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMK 607

Query: 456 ERCEVKKEG--VNADSDLPPPLKPDEELLDALA 486
            RC    +   V    D+    + D+  L+ L+
Sbjct: 608 -RCGFSSDASTVKIVMDMLSSGELDKSFLNMLS 639


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 190/405 (46%), Gaps = 33/405 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P++  Y A+++    +G  ++   L  +M E    P+V+TY+ +I    +       + V
Sbjct: 376 PNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINV 435

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++++L+  I      +  L+  Y   G  EIA  +   M+     V  ++ ++ + +   
Sbjct: 436 MKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKR 495

Query: 176 ENEGDDDDD---DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               D+ ++   D     LL + +N                  YT+LM G+   G+ S  
Sbjct: 496 GKRMDEAEELLKDVTSRGLLLDHVN------------------YTSLMDGFFKAGKESAA 537

Query: 233 VRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
           + M+  M  +    S P D VTY  +++ L++ G  + A+ V + M  +G+  N+ TYNI
Sbjct: 538 LNMVEEMTEK----SIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNI 592

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++K YC+Q ++D A EL  EM    KI P  ++ N L+ G     +   A+   NEM   
Sbjct: 593 MIKAYCKQGELDNALELWNEMKSH-KIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVM 651

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFD--EMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           GI P  + +  L+ A   SS+   AN V    E L D  +K++  A+N L+  +CR+ + 
Sbjct: 652 GIHPNLVIHRVLLNA---SSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMT 708

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++A  +++ M  +GF  +  TY +L  G   +    +AL  + ++
Sbjct: 709 KKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQM 753



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/487 (20%), Positives = 210/487 (43%), Gaps = 29/487 (5%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V +   F    +  D+  DT   N ++     +G  K   ++ D +   G   DV+ +N
Sbjct: 92  LVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFN 151

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I    +A    L + ++ER+ + G+   + ++ +L+  +   G+ + A++++  + E 
Sbjct: 152 TLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISES 211

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS-------EPPLLPKTFA 210
           R     +   +D +    ++  + + D   +  ++                  ++   F 
Sbjct: 212 RGVKDSVFFNID-DRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFL 270

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y++++ G   +GR+S+   +L  M++       P+HV YTT++ +L KAGS   A
Sbjct: 271 PDVVTYSSIVNGLCKDGRLSEAQELLREMKKM---GVDPNHVAYTTLIDSLFKAGSAWEA 327

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
               +++   G+  + +    L+ G  +  +  +A+++ R ++    + P+ ++Y  LID
Sbjct: 328 FACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALS-KLNLIPNSITYTALID 386

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+  + D     +   EM  + I P  I+Y++++  +        A  V  +ML D  + 
Sbjct: 387 GYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKML-DQNII 445

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +   + +L++GYC+ G  E A  +   MK +G   N   +  L N +   ++  EA  L
Sbjct: 446 PNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEEL 505

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            K++  R                 L  D     +L D   +A     AL +V  M E  I
Sbjct: 506 LKDVTSR----------------GLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSI 549

Query: 511 PPNKTKY 517
           P +   Y
Sbjct: 550 PFDVVTY 556



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 178/423 (42%), Gaps = 70/423 (16%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D + DT  YN V+      G   +       M +     D +T N+++K   R       
Sbjct: 72  DVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYG 131

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +++ ++  G    +  F +L+  Y   G++ +A  +V+ MR+                
Sbjct: 132 ERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRK---------------- 175

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                           E LL + ++                  Y TL+ G+   G     
Sbjct: 176 ----------------EGLLSDIVS------------------YNTLINGFCKRGEYDKA 201

Query: 233 VRMLGAMR-----------------RQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVL 274
             +L  +                  +++DN +   D +TYTT++S   K   ++ AR + 
Sbjct: 202 KSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALY 261

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM   G   + +TY+ ++ G C+  ++ +A+ELLREM     ++P+ V+Y  LID    
Sbjct: 262 EEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKK-MGVDPNHVAYTTLIDSLFK 320

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
              +  A    +++  RG+    +  TTL+     SS+PK A  +F   L    +  + +
Sbjct: 321 AGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMF-RALSKLNLIPNSI 379

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +  L++GYC++G +E  + +++ M+E    PNV TY S+ NG +      EA+ + K++
Sbjct: 380 TYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKM 439

Query: 455 KER 457
            ++
Sbjct: 440 LDQ 442



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 113/536 (21%), Positives = 220/536 (41%), Gaps = 75/536 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESV------------KLFDVVVKRVRKFSDP 48
           M + G L  + +++T+++     G+    +S+             +F  +  R++K  + 
Sbjct: 173 MRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNL 232

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           ++    + D   Y  +++        ++   L+++M   G  PDV+TY+ ++    +  R
Sbjct: 233 NL----EADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGR 288

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK---II 165
                 +L  + +MG+      + +L+            +++ +A        C+   ++
Sbjct: 289 LSEAQELLREMKKMGVDPNHVAYTTLI------------DSLFKAGSAWEAFACQSQLVV 336

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP--------PLLPKTFAPNSRIYT 217
           R + L              D V    L + +  SS+P         L      PNS  YT
Sbjct: 337 RGMTL--------------DLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYT 382

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ GY    +V D  R+   ++  E+   +P+ +TY+++++   K G +D A  V+ +M
Sbjct: 383 ALIDGYC---KVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKM 439

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
               +  N   Y IL+ GYC+  + + A +L  EM     ++ + V +++L++       
Sbjct: 440 LDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSG-LKVNNVLFDVLVNNLKRGKR 498

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A     ++ +RG+    ++YT+LM  F  + +   A  + +EM  +  +  D+V +N
Sbjct: 499 MDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEM-TEKSIPFDVVTYN 557

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +L+ G    G   EAK +   M E G  PN ATY  +        +   AL LW E+K  
Sbjct: 558 VLINGLLEHGKY-EAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSH 616

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                            + P     + L      A    KA+ ++  M   GI PN
Sbjct: 617 ----------------KIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPN 656



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 185/421 (43%), Gaps = 31/421 (7%)

Query: 34  LFDVVVKRVRKFSDPDIVSDSKPDTAA---------YNAVLNACANLGKPKKFLQLFDQM 84
           LFDV+V  +++    D   +   D  +         Y ++++     GK    L + ++M
Sbjct: 485 LFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEM 544

Query: 85  HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
            E     DV+TYNV+I        K+    V   ++EMG+     T+  ++ AY   G+L
Sbjct: 545 TEKSIPFDVVTYNVLINGLLEHG-KYEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGEL 603

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
           + A  +   M+  +     I     +   S   E             +  ++N  +E  +
Sbjct: 604 DNALELWNEMKSHKIMPSSITCNTLVVGLSEAGE-------------IEKAMNVLNEMSV 650

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           +     PN  I+  L+      G+ +  ++M     +  D     +   Y  ++    + 
Sbjct: 651 MG--IHPNLVIHRVLLNASSKSGKANAVLQM---HEQLVDMGLKINQEAYNNLIVVFCRL 705

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
               +A  VL  M R G  A+ +TYN L++GYC+   + KA     +M ++  + P++V+
Sbjct: 706 RMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEG-VSPNIVT 764

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN+L+ G +     A     F++M+  G+ P   +Y TL+  +      K + +++ EM+
Sbjct: 765 YNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMV 824

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARK 443
               V      +N+L+  + ++G +++A+ ++  M+  G  P+ +TY  L  G  +L++ 
Sbjct: 825 AQGFVP-KTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKH 883

Query: 444 P 444
           P
Sbjct: 884 P 884



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 5/213 (2%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + +  ++      G + +   +  EM    VP N  T+N+L+  +C+   +  A +L
Sbjct: 8   PTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGNLILALDL 67

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           LR    +  +E D V+YN +I GF        A  F + M  +      I+   L+K F 
Sbjct: 68  LR----NVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFC 123

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                K   ++ D ++     K D++ +N L++GYC+ G +  A  ++ERM++ G   ++
Sbjct: 124 RIGLAKYGERIMDNLVSGGTCK-DVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDI 182

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
            +Y +L NG     +  +A  L  EI E   VK
Sbjct: 183 VSYNTLINGFCKRGEYDKAKSLLHEISESRGVK 215



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 152/342 (44%), Gaps = 33/342 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P +   N ++   +  G+ +K + + ++M   G  P+++ + V++   +++ + + ++ +
Sbjct: 620 PSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQM 679

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
            E++++MG+ +    + +L+  +      + A ++++ M R+G           D   Y+
Sbjct: 680 HEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFV--------ADTVTYN 731

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +   G  +      +K L      ++   +L +  +PN   Y  L+ G +  G +++   
Sbjct: 732 ALIRGYCESSH--VKKAL------ATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDE 783

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M+   +N  +PD  TY T++S   K G+   + ++  EM   G      TYN+L+ 
Sbjct: 784 LFDKMK---ENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLIS 840

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS------------AGAL 342
            + +  ++D+A+ELL EM     + P   +Y+ILI G+  +                 A 
Sbjct: 841 DFAKVGKMDQARELLNEMQVRG-VPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAK 899

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
               EM  +G  P K +   +   FA   +   A K+  E+ 
Sbjct: 900 NLITEMNDKGFVPCKSTIACISSTFARPGKMLDAEKLLKEIF 941


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/517 (23%), Positives = 213/517 (41%), Gaps = 87/517 (16%)

Query: 4   SGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           +G  P+V A++ V+  L  +G  +DG           +K   + S    V    P    Y
Sbjct: 137 AGCSPNVVAYTAVIDGLLKAGRIEDG-----------LKNFEEMSGSSCV----PTRTTY 181

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
             V++            ++F+QM + G  PD +TY  +I   ++AS+      +L+ +L 
Sbjct: 182 TVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLT 241

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G      T+ S+V  +     +  A+ ++  MRE                         
Sbjct: 242 KGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRE------------------------- 276

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                              EP L          I+T+L+  Y+++GR  +  ++L  M  
Sbjct: 277 ----------------RGCEPGLF---------IFTSLLSYYLSKGRAEEAYQVLTEMTA 311

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +      PD + YT+++  L   G +  AR V   M   G   + +TY  +++ + +   
Sbjct: 312 R---GCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGN 368

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ++ A E+L  MA    + PD  +YN L+DG++ ++    A   ++ M A GI P  +++ 
Sbjct: 369 VEAAGEILELMAKSG-VGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFN 427

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            LM       +   A  +F EML    V   +V++ +L++G  + G V EA    + M +
Sbjct: 428 VLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMID 487

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  P   TY SL   ++ A +  EA    K++ E  ++ K GVN          PD + 
Sbjct: 488 RGIIPECHTYTSLIYSLAKAGRIPEA----KKLVE--DMVKLGVN----------PDVQA 531

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
             AL    + ++    A ++   M + G  PN+  YK
Sbjct: 532 YSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYK 568



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 127/548 (23%), Positives = 232/548 (42%), Gaps = 85/548 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P   +YN V++  A++ K  +  + F+ M + G +PDV+ +  +I    +A +  +   
Sbjct: 4   EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHK 63

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIA----------------ETIVQAMREGR 158
           +L + L+      +  + S++  Y   GDL+                   T+++ + + +
Sbjct: 64  LLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSK 122

Query: 159 R--DVCKIIRELDLEDYSSE------------NEGDDDDDDEVFEKLLPNSINPS----- 199
           R  + C++  EL     S                G  +D  + FE++  +S  P+     
Sbjct: 123 RIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYT 182

Query: 200 ------SEPPLLP-----------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                  +  +LP           K   P++  YTTL+ G+    ++ +  ++L  M  +
Sbjct: 183 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 242

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 P  VTY ++V    K   ++ A++V+A+M   G       +  LL  Y  + + 
Sbjct: 243 ---GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRA 299

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A ++L EM       PDV+ Y  LID          A   F+ M  +G AP  ++Y T
Sbjct: 300 EEAYQVLTEMTARG-CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGT 358

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           +++ F+     + A ++  E++    V  D  A+N L++GY ++  V++A  + +RM  +
Sbjct: 359 IIQNFSKIGNVEAAGEIL-ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVAS 417

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G  PN  T+  L +G+    K   A  L+KE+ E+ EV           PP L     L+
Sbjct: 418 GIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEV-----------PPTLVSYTILI 466

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRR 542
           D L     +A    +A      M + GI P          E H+  +TS   S A+  R 
Sbjct: 467 DGLG----KAGRVSEAFLQFQEMIDRGIIP----------ECHT--YTSLIYSLAKAGRI 510

Query: 543 RERKRAAE 550
            E K+  E
Sbjct: 511 PEAKKLVE 518



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 34/327 (10%)

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P  V+Y TV+S L     MD A +    M   G   + I +  L+ G+C+  Q    
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK----ISYT 361
            +LL +     +  PDV  Y  +I G+    D        +    R + P      ISYT
Sbjct: 62  HKLLNQALK--RFRPDVFLYTSVIHGYCKAGD-------LDTGYFRAVTPKASLDVISYT 112

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           T++K  A S +   A ++F+E L+      ++VA+  +++G  + G +E+  +  E M  
Sbjct: 113 TVIKGLADSKRIDEACELFEE-LKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSG 171

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
           +   P   TY  + +G+  A+   +A  +++++ ++  V                PD   
Sbjct: 172 SSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCV----------------PDTIT 215

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDR 541
              L D   +A+   +A +++  M   G  P    Y  I V    ++      ++A++  
Sbjct: 216 YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSI-VHGFCKL---DMINEAKEVI 271

Query: 542 RRERKRAAEAFKFWLGLPNSYYGSEWR 568
            + R+R  E   F      SYY S+ R
Sbjct: 272 AQMRERGCEPGLFIFTSLLSYYLSKGR 298



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 26/188 (13%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG-AKPDVLTYNVMIKLCARASR 108
           + S  KP+   +N +++     GK  +   LF +M E     P +++Y ++I    +A R
Sbjct: 415 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGR 474

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                   + +++ GI     T+ SL+ +    G +  A+ +V+       D+ K+    
Sbjct: 475 VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE-------DMVKLGVNP 527

Query: 169 DLEDYSSENEGDDDDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           D++ YS+   G  D        +VF++++                 APN   Y  L +G+
Sbjct: 528 DVQAYSALITGLIDSSMVDTAWDVFQEMMKRGC-------------APNEVTYKVLRRGF 574

Query: 224 MNEGRVSD 231
              GR  D
Sbjct: 575 RAAGRALD 582


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 206/484 (42%), Gaps = 74/484 (15%)

Query: 20  LAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS---------KPDTAAYNAVLNACAN 70
           LAAS D    +S  +FD ++K     +  D   +           P     N++L+    
Sbjct: 139 LAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLK 198

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMT 129
           L + +    L+ +M     K  V T+N+MI  LC     K    FV   +   G+   + 
Sbjct: 199 LNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFV-GHMETSGVKPNIV 257

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDD 184
           T+ ++V  Y   G +E A+ I+  M+  R+ +     E D   Y S       +G  ++ 
Sbjct: 258 TYNTIVHGYCSSGRVEAADAILTTMK--RQKI-----EPDSFTYGSLISGMCKQGRLEEA 310

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
            ++FE+++   + PS+              IY TL+ G+ N+G +         M ++  
Sbjct: 311 SKIFEEMVQKGLRPSA-------------VIYNTLIDGFCNKGNLDMASAYKDEMLKK-- 355

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P   TY +++ AL      D A  ++ E+   G+  + ITYNIL+ GYC+     K
Sbjct: 356 -GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKK 414

Query: 305 AKELLREM---------------------------ADD-------AKIEPDVVSYNILID 330
           A  L  EM                           ADD         + PD + +N LID
Sbjct: 415 AFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALID 474

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     +  GA     +M    + P ++++ T+M+      + + A ++FDEM R   +K
Sbjct: 475 GHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG-IK 533

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D +++N L+ GY R G +++A R+   M + GF P V TY +L  G+   ++   A  L
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEEL 593

Query: 451 WKEI 454
            KE+
Sbjct: 594 LKEM 597



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 183/415 (44%), Gaps = 31/415 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K     +N ++N     GK KK       M   G KP+++TYN ++     + R      
Sbjct: 218 KSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADA 277

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDY 173
           +L  +    I     T+ SL++     G LE A  I + M ++G R    I   L ++ +
Sbjct: 278 ILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL-IDGF 336

Query: 174 SSENEGDDDDDDEVFEKLLPNSINP--SSEPPLLPKTF--------------------AP 211
              N+G+ D      +++L   I+P  S+   L+   F                    +P
Sbjct: 337 C--NKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           ++  Y  L+ GY    R ++  +          +   P   TYT+++  L K   M  A 
Sbjct: 395 DAITYNILINGYC---RCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +  ++T  GV  + I +N L+ G+C    +  A ELL++M D  K+ PD V++N ++ G
Sbjct: 452 DLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDM-DRMKVPPDEVTFNTIMQG 510

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                    A   F+EM+ RGI P  IS+ TL+  ++     K A +V +EML D     
Sbjct: 511 HCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML-DTGFNP 569

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
            ++ +N LV+G C+    + A+ +++ M   G  P+  TY +L  GI+    P E
Sbjct: 570 TVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 152/317 (47%), Gaps = 24/317 (7%)

Query: 213 SRIYT--TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           S +YT   ++     EG++      +G M   E +   P+ VTY T+V     +G ++ A
Sbjct: 219 SSVYTFNIMINVLCKEGKLKKAKDFVGHM---ETSGVKPNIVTYNTIVHGYCSSGRVEAA 275

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L  M R  +  +  TY  L+ G C+Q ++++A ++  EM     + P  V YN LID
Sbjct: 276 DAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG-LRPSAVIYNTLID 334

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           GF    +   A  + +EM  +GI+PT  +Y +L+ A  +  +   A  +  E +++  + 
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE-IQEKGIS 393

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D + +N+L+ GYCR    ++A  + + M  +G  P   TY SL + +S   +  EA  L
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDL 453

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           +K+I        EGV           PD  + +AL D     +  + A E++  M+   +
Sbjct: 454 FKKITS------EGV----------LPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKV 497

Query: 511 PPNKTKYKKIYVEMHSR 527
           PP++  +  I ++ H R
Sbjct: 498 PPDEVTFNTI-MQGHCR 513



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 189/413 (45%), Gaps = 33/413 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P++  ++T+V    +SG    VE+       +KR +           +PD+  
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGR---VEAADAILTTMKRQK----------IEPDSFT 293

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++     G+ ++  ++F++M + G +P  + YN +I          +     + +L
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI+  M+T+ SL+ A       + AE +++ ++E       I   + +  Y      +
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYC--RCAN 411

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 + +++L + I P+              + YT+L+     + R+ +   +    +
Sbjct: 412 AKKAFLLHDEMLASGIKPTK-------------KTYTSLLHVLSKKNRMKEADDLF---K 455

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +       PD + +  ++       ++  A ++L +M R+ VP + +T+N +++G+C++ 
Sbjct: 456 KITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREG 515

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++++A+EL  EM     I+PD +S+N LI G+    D   A    NEM   G  PT ++Y
Sbjct: 516 KVEEARELFDEMKRRG-IKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTY 574

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             L++    + +  LA ++  EM+       D   +  L+EG  ++ + +E K
Sbjct: 575 NALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT-LIEGIAKVNIPDENK 626



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 264 AGSMDRARQVL----AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            G+ +  R++     A   R+G  ++ I ++ L+K  C   + D+A E    M +   + 
Sbjct: 126 GGTTNSIREIFEFLAASRDRLGFKSS-IVFDYLIKSCCDMNRADEAFECFYTMKEKG-VL 183

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P + + N L+  F+ ++ +  A   + EM    I  +  ++  ++       + K A K 
Sbjct: 184 PTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA-KD 242

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F   +    VK +IV +N +V GYC  G VE A  I+  MK     P+  TYGSL +G+ 
Sbjct: 243 FVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMC 302

Query: 440 LARKPGEALLLWKEIKER 457
              +  EA  +++E+ ++
Sbjct: 303 KQGRLEEASKIFEEMVQK 320


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 193/413 (46%), Gaps = 22/413 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLL 112
           P+   YN +LN     G+ K  L++ D M + G + D+ TYN+MI KLC   R++R +LL
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLE 171
              L+R+ E+ +T    ++ +L+  + G G + +A  I  Q +R+  +        L ++
Sbjct: 322 ---LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTAL-ID 377

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINP---SSEPPLLPKTFA----PNSRIYTTLMKGYM 224
            Y     G  D+   V  ++    + P   S    +L    A    P+   Y+ L+ G  
Sbjct: 378 GYC--RNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMC 435

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
             G + +T  +L    R + +   P++V YTT+V    KAG    A +   ++ R G+ A
Sbjct: 436 KMGMIHETKEILS---RMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVA 492

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N + +N LL  + ++  I +A++  + M+   KI  DV S+N +ID +    +   A + 
Sbjct: 493 NSVIHNALLCSFYREGMIAEAEQFKQYMS-RMKISFDVASFNCIIDSYCQRGNVLEAFSV 551

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           ++ M   G  P   +Y +L++          A K F   L +    +D    N L+ G C
Sbjct: 552 YDNMVRHGWPPDICTYGSLLRGLCQGGHLVQA-KEFMVYLLEKACAIDEKTLNTLLVGIC 610

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           + G ++EA  + E+M      P+  TY  L +G     K   AL+L + + E+
Sbjct: 611 KHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEK 663



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 119/535 (22%), Positives = 216/535 (40%), Gaps = 87/535 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           + D   YN +++    L +  +   L  +M E    PD  +YN +I       + +L ++
Sbjct: 296 EADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIY 355

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR---RDVCKIIREL--- 168
           +  ++L   +   + T+ +L+  Y   G  + A  ++  M+      R+V K  + L   
Sbjct: 356 IFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCM 415

Query: 169 -------DLEDYSSE-----NEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT--- 208
                  D+  YS+        G   +  E+  ++     LPN++  ++      K    
Sbjct: 416 LADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHA 475

Query: 209 --------------FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE---DNASH--- 248
                            NS I+  L+  +  EG +++  +    M R +   D AS    
Sbjct: 476 KEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCI 535

Query: 249 --------------------------PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
                                     PD  TY +++  L + G + +A++ +  +     
Sbjct: 536 IDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKAC 595

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             +  T N LL G C+   +D+A +L  +M     I PD  +Y IL+DGF        AL
Sbjct: 596 AIDEKTLNTLLVGICKHGTLDEALDLCEKMVTR-NILPDTYTYTILLDGFCKRGKIVPAL 654

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
                M  +G+ P  I+YT L+       Q K A+ +F E++    +  D +A+N ++ G
Sbjct: 655 ILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNG 714

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
           Y + G + E +R++  M EN  YP+ A+Y  L +G     +    L L++++       K
Sbjct: 715 YLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDM------VK 768

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           EG+  D ++   L         L +I V+  F  K +     +EE G+ P  T Y
Sbjct: 769 EGIKPD-NVTYRLLIFGLCEYGLIEIAVK--FLEKMV-----LEESGLQPKHTHY 815



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 195/465 (41%), Gaps = 75/465 (16%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARA---SRKHLL 112
           D A++N ++++    G   +   ++D M   G  PD+ TY  +++ LC        K  +
Sbjct: 528 DVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFM 587

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM---------------REG 157
           V++LE+   +       T  +L+      G L+ A  + + M                +G
Sbjct: 588 VYLLEKACAID----EKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDG 643

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS--------EPPLLPKTF 209
                KI+  L L     E       D   +  LL   +N           +  +  +  
Sbjct: 644 FCKRGKIVPALILLQMMLEK--GLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGL 701

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
             +   Y ++M GY+  G++++  R+   MR   +N  +P   +Y  ++   +K G + R
Sbjct: 702 YADCIAYNSMMNGYLKGGQINEIERL---MRNMHENEVYPSSASYNILMHGYIKKGQLSR 758

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA-DDAKIEPDVVSYNIL 328
              +  +M + G+  + +TY +L+ G C+   I+ A + L +M  +++ ++P    Y  L
Sbjct: 759 TLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIAL 818

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+    + D  GA     +M+A G+ P++++ +++++      + + A  VF  ++R   
Sbjct: 819 INAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGM 878

Query: 389 V----------------------------------KVDIVAWNMLVEGYCRMGLVEEAKR 414
           V                                  KVD+V +N+L+ G C    + +A  
Sbjct: 879 VPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALD 938

Query: 415 IIERMKENGFYPNVATYGSLANGI--SLARKPGEALLLWKEIKER 457
           + E MK  G  PN+ TY +L   +  +   + GE LL  K+I++R
Sbjct: 939 LYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLL--KDIEDR 981



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 156/354 (44%), Gaps = 43/354 (12%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           L + F  +      ++     +G++S    ML  M+    N   P+ VTY T+++  VK 
Sbjct: 222 LDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMK----NCRLPNAVTYNTILNWYVKK 277

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G    A ++L +M + G+ A+  TYNI++   C+  +  +A  LL+ M  +  + PD  S
Sbjct: 278 GRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRM-REVNLTPDECS 336

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN LI GF        A+  FN+M  + + P+  +YT L+  +  + +   A +V  EM 
Sbjct: 337 YNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQ 396

Query: 385 RD---PR----------------VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                PR                +  D++ ++ L+ G C+MG++ E K I+ RM+++G  
Sbjct: 397 ITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVL 456

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEVKKEGVNADSDLP 472
           PN   Y +L      A    EAL  + +I                C   +EG+ A+++  
Sbjct: 457 PNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQF 516

Query: 473 PPLKPDEEL-LDALADICVRAAFFRK-----ALEIVACMEEHGIPPNKTKYKKI 520
                  ++  D  +  C+  ++ ++     A  +   M  HG PP+   Y  +
Sbjct: 517 KQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSL 570



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 129/335 (38%), Gaps = 68/335 (20%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+  Y+ EG+V D      A+   ++        +   +++ALV     +     L E  
Sbjct: 166 LVNAYVKEGKVLDAA---AAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKESL 222

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMA------------------------- 313
               P +  T NI+L   C Q ++ KA+ +L++M                          
Sbjct: 223 DRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYVKKGRCKS 282

Query: 314 -----DDAK---IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
                DD +   IE D+ +YNI+ID    +  SA A      MR   + P + SY TL+ 
Sbjct: 283 ALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIH 342

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            F    +  LA  +F++MLR   +K  +  +  L++GYCR G  +EA+R++  M+  G  
Sbjct: 343 GFFGEGKINLAIYIFNQMLRQS-LKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVR 401

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           P                                EV K        L   + PD     AL
Sbjct: 402 PR-------------------------------EVSKAKQILKCMLADGIDPDVITYSAL 430

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            +   +     +  EI++ M++ G+ PN   Y  +
Sbjct: 431 INGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTL 465



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 121/303 (39%), Gaps = 56/303 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P +A+YN +++     G+  + L L+  M + G KPD +TY ++I  LC     +  + F
Sbjct: 738 PSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKF 797

Query: 115 VLERIL-EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           + + +L E G+    T + +L+ A    GD++ A  + + M+                  
Sbjct: 798 LEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKA----------------- 840

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                            ++P+ +  SS                  +++G    G+V + +
Sbjct: 841 ---------------LGVVPSEVAESS------------------IVRGLCKCGKVEEAI 867

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +  ++ R       P   T+TT++  L K   +D A  +   M   G+  + +TYN+L+
Sbjct: 868 IVFSSIMRA---GMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLI 924

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C +  I  A +L  EM     + P++ +Y  L                  ++  RGI
Sbjct: 925 TGLCNKKCICDALDLYEEMKSKGLL-PNITTYITLTGAMYATGTMQDGEKLLKDIEDRGI 983

Query: 354 APT 356
            P+
Sbjct: 984 VPS 986


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 190/445 (42%), Gaps = 47/445 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY PH   ++T++  L   G              V +   F D  +    K D  +
Sbjct: 120 ILKRGYQPHTITFTTLIKGLCLKGQ-------------VNKALHFHDKLLAQGIKFDQVS 166

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G  +  ++L  ++     KP+V  YN +I    +         +   + 
Sbjct: 167 YGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMT 226

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             GI+  + T+ +L+  +     L+ A  ++  M         +++ ++   Y+      
Sbjct: 227 AKGISADVVTYTTLIYGFCIASKLKEAIGLLNEM---------VLKTINPNVYTYNILVD 277

Query: 177 ---NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               EG   +   V   +L   + P             +   Y+TLM GY     +    
Sbjct: 278 ALCKEGKVKEAKNVLAVMLKACVKP-------------DVITYSTLMDGYFLVYELKKAQ 324

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +  AM         PD  +YT +++   K   +D A  +  EM +  +    +TY+ L+
Sbjct: 325 HVFNAMSLM---GVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  +I    +L+ EM D   I  +V++YN LIDG         A+  FN+M+ +GI
Sbjct: 382 DGLCKSGRISYVWDLIDEMRDRG-IPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGI 440

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P   ++T L+       + K A + F ++L      +D+  +N+++ G+C+ GL+EEA 
Sbjct: 441 RPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGY-HLDVYKYNVMINGHCKQGLLEEAL 499

Query: 414 RIIERMKENGFYPNVATYGSLANGI 438
            ++ +M+ENG  PN  T+  + N +
Sbjct: 500 TMLSKMEENGCVPNAVTFDIIINAL 524



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 183/457 (40%), Gaps = 71/457 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L++ A +      + L  ++   G +PD++T N++I       +      V
Sbjct: 57  PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL+ G      TF +L+      G +                     + L   D   
Sbjct: 117 LAKILKRGYQPHTITFTTLIKGLCLKGQVN--------------------KALHFHD--- 153

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                         KLL   I                   Y TL+ G     ++ DT   
Sbjct: 154 --------------KLLAQGIKFDQVS-------------YGTLINGVC---KIGDTRGA 183

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  +R+ +   + P+   Y T++ AL K   +  A  + +EMT  G+ A+ +TY  L+ G
Sbjct: 184 IKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYG 243

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   ++ +A  LL EM     I P+V +YNIL+D          A      M    + P
Sbjct: 244 FCIASKLKEAIGLLNEMVLKT-INPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKP 302

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y+TLM  + L  + K A  VF+ M     V  D+ ++ +L+ G+C+  +V+EA  +
Sbjct: 303 DVITYSTLMDGYFLVYELKKAQHVFNAM-SLMGVTPDVHSYTILINGFCKNKMVDEALNL 361

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            + M +    P + TY SL +G+    K G    +W  I E           D  +P  +
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLC---KSGRISYVWDLIDEM---------RDRGIPANV 409

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
                L+D L     +     +A+ +   M++ GI P
Sbjct: 410 ITYNSLIDGLC----KNGHLDRAIALFNKMKDQGIRP 442



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 31/295 (10%)

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           VS   RML  MR        P  + +  ++ +  K      A  +   +   G+  + IT
Sbjct: 44  VSQFNRML-CMRHT------PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
            NIL+  +C   QI     +L ++      +P  +++  LI G  L      AL F +++
Sbjct: 97  LNILINCFCHMGQITFGFSVLAKILKRG-YQPHTITFTTLIKGLCLKGQVNKALHFHDKL 155

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKV---FDEMLRDPRVKVDIVAWNMLVEGYCR 405
            A+GI   ++SY TL+         + A K+    D  L  P V++    +N +++  C+
Sbjct: 156 LAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEM----YNTIIDALCK 211

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
             LV EA  +   M   G   +V TY +L  G  +A K  EA+ L  E+           
Sbjct: 212 YQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEM----------- 260

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                +   + P+    + L D   +    ++A  ++A M +  + P+   Y  +
Sbjct: 261 -----VLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTL 310



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 18/227 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  ++N         + L LF +MH+    P ++TY+ +I    ++ R   +  +
Sbjct: 337 PDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDL 396

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++ + + GI   + T+ SL+      G L+ A  +   M++     C     + L+    
Sbjct: 397 IDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCK 456

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D  E F+              LL K +  +   Y  ++ G+  +G + + + M
Sbjct: 457 --GGRLKDAQEAFQD-------------LLTKGYHLDVYKYNVMINGHCKQGLLEEALTM 501

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           L  M   E+N   P+ VT+  +++AL K    D+A ++L +M   G+
Sbjct: 502 LSKM---EENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 192/446 (43%), Gaps = 45/446 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  ++TV+  L  +         +LFD      ++  D  +    KP+   YN +++ 
Sbjct: 205 PNVVTYTTVIDGLCKA---------QLFDRAEGVFQQMIDNGV----KPNNDTYNCLIHG 251

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
             ++GK K+ +Q+ ++M   G KPD  TY  ++      S  H     L+ ++E G++  
Sbjct: 252 YLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSF---LDLMVENGLSPD 308

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
              F    +AY   G ++ A  I   MR+       ++    L D   +  G  DD +  
Sbjct: 309 HHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSP-NVVNYGALIDALCK-LGRVDDAEVK 366

Query: 188 FEKLLPNSINPS-------------------SEP---PLLPKTFAPNSRIYTTLMKGYMN 225
           F +++   + P+                   +E     +L +   PN+  + TL+    N
Sbjct: 367 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 426

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            GRV +  R++  M   E     PD  +YT ++S    AG  D A +V   M  IG+   
Sbjct: 427 VGRVMEGRRLIDLM---EHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPT 483

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
            +TYN LL GYC   +ID A  L REM     + P VV+YN ++ G       + A   +
Sbjct: 484 EVTYNTLLHGYCSASRIDDAYCLFREMLRKG-VTPGVVTYNTILHGLFQTKRFSEAKELY 542

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
             M   G      +Y  ++     S+    A K+F + L    ++++I+ + +++    +
Sbjct: 543 LNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMF-QSLCSKGLQLNIITFTIMIGALLK 601

Query: 406 MGLVEEAKRIIERMKENGFYPNVATY 431
            G  E+A  +   +  NG  PNV TY
Sbjct: 602 GGRKEDAMDLFAAIPANGLVPNVVTY 627



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 178/420 (42%), Gaps = 35/420 (8%)

Query: 36  DVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQM---HEFGAKPD 92
           DV+++R+     P++     PDT +Y+ +L    N  + ++ L+L   M   H     P+
Sbjct: 154 DVLLQRM-----PEL--GCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPN 206

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIV 151
           V+TY  +I    +A        V +++++ G+     T+  L+  Y+  G   E+ + + 
Sbjct: 207 VVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLE 266

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           +    G +         D   Y S           +   L   S   S    ++    +P
Sbjct: 267 KMSARGLKP--------DCYTYGS-----------LLNYLCALSEMHSFLDLMVENGLSP 307

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +  I+      Y   G +   + +   MR+       P+ V Y  ++ AL K G +D A 
Sbjct: 308 DHHIFNIFFSAYAKCGMIDKAMDIFNKMRQH---GLSPNVVNYGALIDALCKLGRVDDAE 364

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
               +M   GV  N + +N L+ G C   + ++A+EL+ EM D   I P+ V +N LI  
Sbjct: 365 VKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG-ICPNAVFFNTLICN 423

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
              +          + M   G+ P   SYT L+  + L+ +   A KVFD M+       
Sbjct: 424 LCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPT 483

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           + V +N L+ GYC    +++A  +   M   G  P V TY ++ +G+   ++  EA  L+
Sbjct: 484 E-VTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELY 542



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 184/434 (42%), Gaps = 54/434 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+T  Y+ ++     +G+ K     F  + + G + + +  N ++K LC        +  
Sbjct: 96  PNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDV 155

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+R+ E+G T    ++  L+  +      E A  +++ M       C      ++  Y+
Sbjct: 156 LLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPP----NVVTYT 211

Query: 175 SENEGDD-----DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +  +G       D  + VF++++ N + P             N+  Y  L+ GY++ G+ 
Sbjct: 212 TVIDGLCKAQLFDRAEGVFQQMIDNGVKP-------------NNDTYNCLIHGYLSIGKW 258

Query: 230 SDTVRMLGAMRRQE-----------------------------DNASHPDHVTYTTVVSA 260
            + V+ML  M  +                              +N   PDH  +    SA
Sbjct: 259 KEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSA 318

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
             K G +D+A  +  +M + G+  N + Y  L+   C+  ++D A+    +M ++  + P
Sbjct: 319 YAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEG-VTP 377

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           ++V +N L+ G   +D    A     EM  +GI P  + + TL+       +     ++ 
Sbjct: 378 NIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI 437

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           D ++    V+ D  ++  L+ GYC  G  +EA+++ + M   G  P   TY +L +G   
Sbjct: 438 D-LMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCS 496

Query: 441 ARKPGEALLLWKEI 454
           A +  +A  L++E+
Sbjct: 497 ASRIDDAYCLFREM 510



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 124/292 (42%), Gaps = 23/292 (7%)

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V +   M R+      P+  TY+ ++  L + G +  +      + + G   N I  N 
Sbjct: 79  VVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQ 138

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM--- 348
           LLKG C   ++ +A ++L +   +    PD VSY+IL+ GF   + +  AL     M   
Sbjct: 139 LLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMAND 198

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             R   P  ++YTT++     +     A  VF +M+ D  VK +   +N L+ GY  +G 
Sbjct: 199 HGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMI-DNGVKPNNDTYNCLIHGYLSIGK 257

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
            +E  +++E+M   G  P+  TYGSL N +                   C + +     D
Sbjct: 258 WKEVVQMLEKMSARGLKPDCYTYGSLLNYL-------------------CALSEMHSFLD 298

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +   L PD  + +       +     KA++I   M +HG+ PN   Y  +
Sbjct: 299 LMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGAL 350


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 121/491 (24%), Positives = 218/491 (44%), Gaps = 49/491 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P   A+ T++  L  +G      ++ L   ++    ++    I    +PD   
Sbjct: 296 MKKLGCRPDAIAYGTLMKGLCQTGKINI--ALHLHQEMLNDTSQYGIKCI----RPDVTT 349

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            + +++     GK  +  +L + M + G   D++TY+ +IK      R     ++   + 
Sbjct: 350 SSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQ 409

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDV-CKIIRELDLEDYSSEN 177
           ++G      T+ +L+      G++ IA  + Q M    GR  + CK      L  YS   
Sbjct: 410 KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKP----TLISYSIII 465

Query: 178 EG-----DDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFA 210
           +G      +D+  E+FE++    I P                           +L     
Sbjct: 466 DGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQ 525

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+    + L+     +G+V +  ++L  + ++       D VT TT+V  L     + +A
Sbjct: 526 PDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR---GCILDVVTCTTLVKGLCMKHRISKA 582

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-----KIEPDVVSY 325
            Q+  +M ++G   N +T   L+KG CQ   I  A EL + M  D        +P+ +SY
Sbjct: 583 TQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISY 642

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           +I+IDG         A   F EM+A G+ P  ISYT+L+  F  S + K A  +F+EM+ 
Sbjct: 643 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV- 701

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D  V+ D+  +++L++  C+ G V EA  ++E M + G  PN  TY +L  G+ +  +  
Sbjct: 702 DIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRIS 761

Query: 446 EALLLWKEIKE 456
           EA  L+ ++++
Sbjct: 762 EATQLFMKMQK 772



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 199/441 (45%), Gaps = 56/441 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y ++++   + GK +K   LF++M + G +PDV T  V+I +  +  +      +
Sbjct: 198 PDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANEL 257

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYS 174
           LE ++  G  L + T+ +L+        +  A  +  +M++ G R         D   Y 
Sbjct: 258 LEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRP--------DAIAYG 309

Query: 175 SENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           +  +G        +   L    +N +S+  +  K   P+    + L+     EG+V +  
Sbjct: 310 TLMKGLCQTGKINIALHLHQEMLNDTSQYGI--KCIRPDVTTSSMLIDILCKEGKVIEAN 367

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M ++       D VTY+T++  L     +  A  +   M ++G   + ITY  L+
Sbjct: 368 ELLEVMIQR---GCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLM 424

Query: 294 KGYCQQLQIDKAKELLREMADDA-----KIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           KG CQ   I+ A +L +EM +D      K +P ++SY+I+IDG         A   F EM
Sbjct: 425 KGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEM 484

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
           +A+GI P  ISYTTL+  F LS + + A  +F+EML D  ++ D+   ++L++  C+ G 
Sbjct: 485 KAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML-DVGIQPDVTTSSVLIDMLCKKGK 543

Query: 409 VEEAKRIIE-----------------------------------RMKENGFYPNVATYGS 433
           V EA +++E                                   +M++ G  PNV T  +
Sbjct: 544 VIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCAT 603

Query: 434 LANGISLARKPGEALLLWKEI 454
           L  G+  +     AL L K +
Sbjct: 604 LMKGLCQSGNIKIALELHKNM 624



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 198/408 (48%), Gaps = 20/408 (4%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  +++     GK +K   LF++M + G +PDV T +V+I +  +  +      +
Sbjct: 491 PDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKL 550

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE +++ G  L + T  +LV        +  A  +   M+       K+    ++   ++
Sbjct: 551 LEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQ-------KLGCMPNVVTCAT 603

Query: 176 ENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             +G     + ++  +L  N ++ +S   +  K   PN+  Y+ ++ G    GR  +   
Sbjct: 604 LMKGLCQSGNIKIALELHKNMLSDTSPYGINCK---PNAISYSIIIDGLCKCGREDEARE 660

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M+        PD ++YT+++    ++G    A+ +  EM  IGV  +  T+++L+ 
Sbjct: 661 LFKEMKAL---GVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLID 717

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C++ ++ +A ELL  M     I P+ V+Y  L+ G  + D  + A   F +M+  G  
Sbjct: 718 MLCKEGKVIEANELLEVMIQRGCI-PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCL 776

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDP-----RVKVDIVAWNMLVEGYCRMGLV 409
           P  ++Y TLMK    +   K A ++  +ML D        K D+++++++++G C+ G  
Sbjct: 777 PDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGRE 836

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +EA+ + + MK  G  PNV +Y SL +G   + K  +A  L+ E+ ++
Sbjct: 837 DEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQ 884



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 9/260 (3%)

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
           P ++  +  P+    + L+     EG+V +   +L  M ++       D VTY+T++  L
Sbjct: 43  PDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQR---GCILDIVTYSTLIKGL 99

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA----- 316
                +  A  +   M ++G   + ITY  L+KG CQ   I+ A +L +EM +D      
Sbjct: 100 CMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGI 159

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           K +P ++SY+I+IDG         A   F EM+A+G+ P  ISYT+L+  F  S + + A
Sbjct: 160 KCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKA 219

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +F+EML D  ++ D+    +L++ +C+ G V EA  ++E M   G   ++ TY +L  
Sbjct: 220 KCLFNEML-DVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIK 278

Query: 437 GISLARKPGEALLLWKEIKE 456
           G+ +  +  EA  L+  +K+
Sbjct: 279 GLCMKHRISEATQLFMSMKK 298



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 211/461 (45%), Gaps = 66/461 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESV--KLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M   G +P V +++T++     SG     + +  ++ DV ++               PD 
Sbjct: 484 MKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQ---------------PDV 528

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLE 117
              + +++     GK  +  +L + + + G   DV+T   ++K LC     KH +    +
Sbjct: 529 TTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCM----KHRISKATQ 584

Query: 118 RILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV---CK---IIREL 168
             L+M    CM    T  +L+      G+++IA  + + M          CK   I   +
Sbjct: 585 LFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSI 644

Query: 169 DLEDYSSENEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT--------------- 208
            ++       G +D+  E+F+++     +P+ I+ +S      ++               
Sbjct: 645 IIDGLC--KCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 702

Query: 209 --FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
               P+   ++ L+     EG+V +   +L  M ++      P+ VTYTT+V  L     
Sbjct: 703 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQR---GCIPNTVTYTTLVKGLCMNDR 759

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-----KIEPD 321
           +  A Q+  +M ++G   + +TY  L+KG CQ   I  A EL ++M  D        +PD
Sbjct: 760 ISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPD 819

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           V+SY+I+IDG         A   F EM+A G+ P  ISYT+L+  F  S + + A  +F+
Sbjct: 820 VISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFN 879

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           EM+ D  V+++ V +++++ G+C+ G +++A  + ++M+ N
Sbjct: 880 EMV-DQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEAN 917



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 122/572 (21%), Positives = 231/572 (40%), Gaps = 99/572 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P V     ++      G    +E+ +L +V+V R               D   
Sbjct: 226 MLDVGIQPDVTTSGVLIDMFCKEGK--VIEANELLEVMVHR-----------GCILDIVT 272

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++       +  +  QLF  M + G +PD + Y  ++K   +  + ++ + + + +L
Sbjct: 273 YSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEML 332

Query: 121 ----EMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
               + GI      +TT   L+      G +  A  +++ M + R  +      LD+  Y
Sbjct: 333 NDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQ-RGCI------LDIVTY 385

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--PNSRIYTTLMKGYMNEGRVSD 231
           S+  +G            + + I+ ++   +  +     P++  Y TLMKG    G ++ 
Sbjct: 386 STLIKG----------LCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINI 435

Query: 232 TVRMLGAMRRQEDN---ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
            +++   M            P  ++Y+ ++  L K    D AR++  EM   G+  + I+
Sbjct: 436 ALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVIS 495

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID------------------ 330
           Y  L+ G+C   + +KAK L  EM D   I+PDV + ++LID                  
Sbjct: 496 YTTLIHGFCLSGKWEKAKCLFNEMLD-VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVV 554

Query: 331 -----------------GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
                            G  +    + A   F +M+  G  P  ++  TLMK    S   
Sbjct: 555 IQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNI 614

Query: 374 KLANKVFDEMLRDP-----RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
           K+A ++   ML D        K + ++++++++G C+ G  +EA+ + + MK  G  P+V
Sbjct: 615 KIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDV 674

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            +Y SL +G   + K  +A  L+ E+                +   ++PD      L D+
Sbjct: 675 ISYTSLIHGFCRSGKWKDAKYLFNEM----------------VDIGVQPDVTTFSVLIDM 718

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     +A E++  M + G  PN   Y  +
Sbjct: 719 LCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 750



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 216/522 (41%), Gaps = 96/522 (18%)

Query: 42  VRKFSDPDIVSDS-KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           +R+   PDIV+ S +PD    + +++     GK  +  +L + M + G   D++TY+ +I
Sbjct: 37  MRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLI 96

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GR 158
           K      R     ++   + ++G      T+ +L+      G++ IA  + Q M    GR
Sbjct: 97  KGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGR 156

Query: 159 RDV-CKIIRELDLEDYSSENEG-----DDDDDDEVFEK-----LLPNSINPSSE------ 201
             + CK      L  YS   +G      +D+  E+F++     ++P+ I+ +S       
Sbjct: 157 YGIKCKP----TLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCH 212

Query: 202 -----------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
                        +L     P+      L+  +  EG+V +   +L  M  +       D
Sbjct: 213 SGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHR---GCILD 269

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY+T++  L     +  A Q+   M ++G   + I Y  L+KG CQ  +I+ A  L +
Sbjct: 270 IVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQ 329

Query: 311 EMADDAK------IEPDV-----------------------------------VSYNILI 329
           EM +D        I PDV                                   V+Y+ LI
Sbjct: 330 EMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLI 389

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP-- 387
            G  +    + A   F  M+  G  P  I+Y TLMK    +    +A ++  EML D   
Sbjct: 390 KGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGR 449

Query: 388 ---RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
              + K  +++++++++G C+    +EA+ + E MK  G  P+V +Y +L +G  L+ K 
Sbjct: 450 YGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKW 509

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
            +A  L+ E+             D  + P +     L+D L 
Sbjct: 510 EKAKCLFNEM------------LDVGIQPDVTTSSVLIDMLC 539



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 183/416 (43%), Gaps = 31/416 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            KP   +Y+ +++      +  +  +LF +M   G  PDV++Y  +I     + +     
Sbjct: 161 CKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAK 220

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +   +L++GI   +TT   L+  +   G +  A  +++ M   R  +      LD+  Y
Sbjct: 221 CLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVH-RGCI------LDIVTY 273

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--PNSRIYTTLMKGYMNEGRVSD 231
           S+  +G            + + I+ +++  +  K     P++  Y TLMKG    G+++ 
Sbjct: 274 STLIKG----------LCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINI 323

Query: 232 TVR----MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            +     ML    +       PD  T + ++  L K G +  A ++L  M + G   + +
Sbjct: 324 ALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIV 383

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY+ L+KG C + +I +A  L   M       PD ++Y  L+ G     +   AL    E
Sbjct: 384 TYSTLIKGLCMEHRISEATWLFMSM-QKLGCRPDAITYGTLMKGLCQTGNINIALQLHQE 442

Query: 348 MRA----RGIA--PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           M       GI   PT ISY+ ++       +   A ++F+EM +   +  D++++  L+ 
Sbjct: 443 MLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEM-KAQGIMPDVISYTTLIH 501

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G+C  G  E+AK +   M + G  P+V T   L + +    K  EA  L + + +R
Sbjct: 502 GFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR 557



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 15/220 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI---------LLKGYCQQ 299
           PD  T+  +++ L     ++     +A + R G   + +TY+I         L+   C++
Sbjct: 8   PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKE 67

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A ELL  M     I  D+V+Y+ LI G  +    + A   F  M+  G  P  I+
Sbjct: 68  GKVIEANELLEVMIQRGCI-LDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAIT 126

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDP-----RVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           Y TLMK    +    +A ++  EML D      + K  +++++++++G C+    +EA+ 
Sbjct: 127 YGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARE 186

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           + + MK  G  P+V +Y SL +G   + K  +A  L+ E+
Sbjct: 187 LFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEM 226


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y T++      G       +L AM  +   A  P+ V+YT ++ AL      D+A  +L 
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   GV A+ +TY  L++G C   ++DKA EL+ EM +   IEP+VV Y+ L+ G+   
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG-IEPNVVVYSSLLQGYCKS 198

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                    F EM  +GI P  + YT L+ +     + K A+ V D M+R   ++ ++V 
Sbjct: 199 GRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRG-LEPNVVT 257

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L+   C+ G V+EA  ++++M E G  P+V TY +L  G+S   +  EA+ L +E+ 
Sbjct: 258 YNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEM- 316

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                    V   + + P +     ++  L DI       R+A ++ A MEE G   N  
Sbjct: 317 ---------VRGKNIVKPNVVTFNSVIQGLCDI----GRMRQAFQVRAMMEETGCMVNLV 363

Query: 516 KY 517
            Y
Sbjct: 364 TY 365



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 186/404 (46%), Gaps = 23/404 (5%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           +L D  V  +R      +    + D   Y  ++    +  +  K ++L  +M E G +P+
Sbjct: 129 RLADQAVGLLRSMRSAGV----RADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPN 184

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           V+ Y+ +++   ++ R   +  V   + E GI   +  +  L+ +    G  + A  ++ 
Sbjct: 185 VVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMD 244

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
            M   RR +   +   ++       EG   +   V +K+        SE     K  AP+
Sbjct: 245 MMV--RRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM--------SE-----KGVAPD 289

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y TL+KG  +   + + + +L  M R + N   P+ VT+ +V+  L   G M +A Q
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMVRGK-NIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V A M   G   N +TYN+L+ G  +  ++ KA EL+ EM     +EPD  +Y+ILI GF
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMT-SLGLEPDSFTYSILIKGF 407

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
             +     A    + MR RGI P    Y  L+ A       + A  +F+EM  D    +D
Sbjct: 408 CKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM--DNNFPLD 465

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
           +VA++ ++ G C+ G ++ AK +++ + + G  P+  TY  + N
Sbjct: 466 VVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVIN 509



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 206/455 (45%), Gaps = 69/455 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P+V  +S+++     SG          ++ V K   + S+  I    +PD   
Sbjct: 176 MCESGIEPNVVVYSSLLQGYCKSGR---------WEDVGKVFVEMSEKGI----EPDVVM 222

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++++   +GK KK   + D M   G +P+V+TYNV+I  +C   S K   + VL+++
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEA-IGVLKKM 281

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            E G+   + T+ +L+       +++ A  +++ M  G+  V                  
Sbjct: 282 SEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIV------------------ 323

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                          PN   + ++++G  + GR+    ++   M
Sbjct: 324 ------------------------------KPNVVTFNSVIQGLCDIGRMRQAFQVRAMM 353

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
              E+     + VTY  ++  L++   + +A +++ EMT +G+  +  TY+IL+KG+C+ 
Sbjct: 354 ---EETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKM 410

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+D+A++LL  M D   IEP++  Y  L+           A   FNEM         ++
Sbjct: 411 WQVDRAEDLLSTMRDRG-IEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDVVA 468

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+T++     +   K A ++   ++ D  +  D V +++++  + + G +E A  ++++M
Sbjct: 469 YSTMIHGACKAGDLKTAKELLKSIV-DEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             +GF P+VA + SL  G S   +  + L L +E+
Sbjct: 528 TASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 153/349 (43%), Gaps = 54/349 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  YT LM+    + R++D  + +G +R         D VTY T++  L  A  +D+A
Sbjct: 113 PNAVSYTVLMRALCAD-RLAD--QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKA 169

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------- 316
            +++ EM   G+  N + Y+ LL+GYC+  + +   ++  EM++                
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDS 229

Query: 317 --------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                                +EP+VV+YN+LI+          A+    +M  +G+AP 
Sbjct: 230 LCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPR-VKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            ++Y TL+K  +   +   A  + +EM+R    VK ++V +N +++G C +G + +A ++
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
              M+E G   N+ TY  L  G+    K  +A+ L  E+                    L
Sbjct: 350 RAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSL----------------GL 393

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
           +PD      L     +     +A ++++ M + GI P    Y  + V M
Sbjct: 394 EPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  AY+ +++     G  K   +L   + + G  PD +TY+++I + A++        VL
Sbjct: 465 DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVL 524

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIREL------- 168
           +++   G    +  F SL+  Y   G++ ++ E I + + +      KII  L       
Sbjct: 525 KQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVAS 584

Query: 169 --------DLEDYSSENEGDDDDDDEVFEKLLPNSIN---PSSE 201
                    L D+S+E    + +  +   K+L N+I+   PS++
Sbjct: 585 NEGKALLQSLPDFSAEISKGNINSPQELMKVLHNAISFKAPSNQ 628


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 202/461 (43%), Gaps = 43/461 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P V  ++ V+  LA  GD             ++  R   +       +PD   
Sbjct: 242 MVVAGLSPSVFTYNMVIGCLAREGD-------------LEAARSLFEEMKAKGLRPDIVT 288

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++    +G     + +F++M + G +PDV+TYN +I    +  R       L  + 
Sbjct: 289 YNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMK 348

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           + G+   + T+ +L+ A+   G L E  +  V  +R G          L   +++  +  
Sbjct: 349 QRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVG----------LQPNEFTYTSLI 398

Query: 180 DDD----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           D +    D +E F+           E  +       N   YT L+ G   +GR+ +   +
Sbjct: 399 DANCKIGDLNEAFKL----------ESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEEL 448

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            GA+ +        +   YT++    +KA  M++A  +L EM +  +  + + Y   + G
Sbjct: 449 FGALLKA---GWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWG 505

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+Q +I+ +  ++REM D   +  +   Y  LID +  +  +  A+    EM+  GI  
Sbjct: 506 LCRQNEIEDSMAVIREMMD-CGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKI 564

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T ++Y  L+         + A + FD M R+  ++ +I+ +  L++G C+   +EEAK +
Sbjct: 565 TVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNG-LQPNIMIYTALIDGLCKNDCLEEAKNL 623

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              M + G  P+   Y SL +G      PGEAL L   + E
Sbjct: 624 FNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVE 664



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 201/451 (44%), Gaps = 33/451 (7%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP V++ + ++ RL+ S   G   S             F    +V+   P    YN V+ 
Sbjct: 213 LPKVRSCNELLHRLSKSSKGGLALS-------------FFKDMVVAGLSPSVFTYNMVIG 259

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
             A  G  +    LF++M   G +PD++TYN +I    +       V V E + + G   
Sbjct: 260 CLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEP 319

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+ SL+  +  F  +  A   +  M++ R     ++    L D   +  G   + ++
Sbjct: 320 DVITYNSLINCFCKFERIPQAFEYLHGMKQ-RGLQPNVVTYSTLIDAFCK-AGMLLEANK 377

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
            F  ++   + P             N   YT+L+      G +++  ++   M++   N 
Sbjct: 378 FFVDMIRVGLQP-------------NEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNL 424

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
              + VTYT ++  L + G M  A ++   + + G   N+  Y  L  GY +   ++KA 
Sbjct: 425 ---NIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAM 481

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           ++L EM +   ++PD++ Y   I G    ++   ++    EM   G+      YTTL+ A
Sbjct: 482 DILEEM-NKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDA 540

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
           +    +   A  +  EM +D  +K+ +V + +L++G C++GLV++A R  + M  NG  P
Sbjct: 541 YFKVGKTTEAVNLLQEM-QDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQP 599

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKER 457
           N+  Y +L +G+       EA  L+ E+ ++
Sbjct: 600 NIMIYTALIDGLCKNDCLEEAKNLFNEMLDK 630



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 181/424 (42%), Gaps = 33/424 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V  +ST++     +G             ++    KF    I    +P+   
Sbjct: 347 MKQRGLQPNVVTYSTLIDAFCKAG-------------MLLEANKFFVDMIRVGLQPNEFT 393

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++A   +G   +  +L  +M + G   +++TY  ++       R      +   +L
Sbjct: 394 YTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALL 453

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G TL    + SL   Y+    +E A  I++ M +       ++    +     +NE  
Sbjct: 454 KAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNE-- 511

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +D   V  +++   +               NS IYTTL+  Y   G+ ++ V +L  M 
Sbjct: 512 IEDSMAVIREMMDCGLTA-------------NSYIYTTLIDAYFKVGKTTEAVNLLQEM- 557

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             +D       VTY  ++  L K G + +A +    MTR G+  N + Y  L+ G C+  
Sbjct: 558 --QDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKND 615

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +++AK L  EM D   I PD + Y  LIDG +   +   AL+  N M   G+     +Y
Sbjct: 616 CLEEAKNLFNEMLDKG-ISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAY 674

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T+L+  F+   Q +LA  + DEMLR   +  D V    L+  Y  +G + EA  + + M 
Sbjct: 675 TSLIWGFSRYGQVQLAKSLLDEMLRKGIIP-DQVLCICLLRKYYELGDINEALALHDDMA 733

Query: 421 ENGF 424
             G 
Sbjct: 734 RRGL 737



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 22/290 (7%)

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D   ML + R    N   P    + T+ + LV  G ++ ARQ   +M +  V     + N
Sbjct: 165 DFFDMLWSTR----NVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCN 220

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            LL    +  +   A    ++M   A + P V +YN++I       D   A + F EM+A
Sbjct: 221 ELLHRLSKSSKGGLALSFFKDMVV-AGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKA 279

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+ P  ++Y +L+  +        A  VF+EM +D   + D++ +N L+  +C+   + 
Sbjct: 280 KGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEM-KDAGCEPDVITYNSLINCFCKFERIP 338

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A   +  MK+ G  PNV TY +L +         +A +L +  K   ++ + G      
Sbjct: 339 QAFEYLHGMKQRGLQPNVVTYSTLIDAFC------KAGMLLEANKFFVDMIRVG------ 386

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               L+P+E    +L D   +     +A ++ + M++ G+  N   Y  +
Sbjct: 387 ----LQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTAL 432


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1202

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 188/422 (44%), Gaps = 29/422 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++    + + K   QLFD+M      P ++TYN +I    +         V
Sbjct: 585 PTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKV 644

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            ER+    I   + TF +L+      G +E AE ++  M++           +  + YSS
Sbjct: 645 RERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSS 704

Query: 176 ENEGDDDDDDEVFEKLLPNSI--NPSSEPPLL--------------------PKTFAPNS 213
            ++ D      V+E  + + +  N  +   LL                     K   PN 
Sbjct: 705 NDKADAALG--VYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNE 762

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
            +Y T++ GY  +G +      + AM +Q      PDH+ Y  ++    + G M+ A Q 
Sbjct: 763 VLYNTMIDGYSRKGDLVGARMKIDAMEKQ---GMKPDHLAYNCLIRTFCELGDMENAEQE 819

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           + +M   GV  +  TYNIL+ GY ++ + DK  +LL+EM D+  + P+VVSY  LI+   
Sbjct: 820 VNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTM-PNVVSYGTLINCLC 878

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A     +M  RG++P    Y  L+       + + A +  +EM +   +++++
Sbjct: 879 KGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKG-IELNL 937

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L++G    G + EA+ ++  +   G  P+V TY SL +G   A      + L++E
Sbjct: 938 VTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEE 997

Query: 454 IK 455
           +K
Sbjct: 998 MK 999



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 206/518 (39%), Gaps = 89/518 (17%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            ML    LP +  ++T++      G+  P +S K+      R R  +D     + +P    
Sbjct: 613  MLARRLLPSLITYNTLIDGYCKDGN--PEKSFKV------RERMKAD-----NIEPSLIT 659

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            +N +L      G  +    +  +M + G  PD  T++++    +   +    + V E  +
Sbjct: 660  FNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAV 719

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            + G+ +   T   L+ A    G +E AE I+     GR     ++    L  Y++  +G 
Sbjct: 720  DSGLKMNAYTCSILLNALCKEGQIEKAEEIL-----GREMAKGLVPNEVL--YNTMIDGY 772

Query: 181  DDDDDEVFEKLLPNSINPSSEPP------LLPKTF---------------------APNS 213
                D V  ++  +++      P       L +TF                     +P+ 
Sbjct: 773  SRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSV 832

Query: 214  RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
              Y  L+ GY   GR  +  +    ++  EDN + P+ V+Y T+++ L K   +  A+ V
Sbjct: 833  ETYNILIGGY---GRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIV 889

Query: 274  LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM--------------------- 312
              +M   GV  N   YN+L+ G C + +I+ A     EM                     
Sbjct: 890  KRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSM 949

Query: 313  ------ADDAKIE-------PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
                  A+D  +E       PDV +YN LI G+    +    +  + EM+  GI PT  +
Sbjct: 950  NGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKT 1009

Query: 360  YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
            Y  L+ +       +L  K+F EM   P    D++ +N ++  Y   G +++A  + ++M
Sbjct: 1010 YHLLI-SLCTKEGIELTKKIFGEMSLQP----DLLVYNGVLHCYAVHGDMDKAFNLQKQM 1064

Query: 420  KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             E     +  TY SL  G     K  E   L  E+K R
Sbjct: 1065 IEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAR 1102



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 150/356 (42%), Gaps = 30/356 (8%)

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNS-----RIYTTLMKGYMNEGR-VSDTVRMLGAMR 240
           V   LL +   P + P  L   F+ +S          L+   +NE + +S+   +  A+R
Sbjct: 450 VLYSLLRSDSAPFTSPKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAADLFFALR 509

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P   + T ++  LVK         V   +       ++  Y   ++   +  
Sbjct: 510 NE---GIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLS 566

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            + K  EL   M  D +I P V  YN+LIDG   +     A   F+EM AR + P+ I+Y
Sbjct: 567 DVGKGLELFNRMKHD-RISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITY 625

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            TL+  +     P+ + KV + M  D  ++  ++ +N L++G  + G+VE+A+ ++  MK
Sbjct: 626 NTLIDGYCKDGNPEKSFKVRERMKAD-NIEPSLITFNTLLKGLFKAGMVEDAENVLTEMK 684

Query: 421 ENGFYPNVATYGSLANGISLARKPGEAL-------------------LLWKEIKERCEVK 461
           + GF P+  T+  L +G S   K   AL                   +L   + +  +++
Sbjct: 685 DQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIE 744

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           K       ++   L P+E L + + D   R      A   +  ME+ G+ P+   Y
Sbjct: 745 KAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAY 800



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 144/340 (42%), Gaps = 47/340 (13%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
            P+  +Y  ++N    L K  K L+   +   M + G  P+V  YN++I  C    +    
Sbjct: 865  PNVVSYGTLINC---LCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDA 921

Query: 113  VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE-TIVQAMREGRRDVCKIIRELDLE 171
                E + + GI L + T+ +L+      G L  AE  +++  R+G +         D+ 
Sbjct: 922  FRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKP--------DVF 973

Query: 172  DYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
             Y+S        G+      ++E++  + I P+              + Y  L+     E
Sbjct: 974  TYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTL-------------KTYHLLISLCTKE 1020

Query: 227  GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            G +  T ++ G M  Q      PD + Y  V+      G MD+A  +  +M    +  ++
Sbjct: 1021 G-IELTKKIFGEMSLQ------PDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDK 1073

Query: 287  ITYNILLKGYCQQLQIDKAKELLREMADDAK---IEPDVVSYNILIDGFILIDDSAGALT 343
             TYN L+ G   QL++ K  E+ R + D+ K   +EP+  +Y+I++ G   + D  GA  
Sbjct: 1074 TTYNSLILG---QLKVGKLCEV-RSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYV 1129

Query: 344  FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            ++ EM+ +G+         L+       + K A  V  EM
Sbjct: 1130 WYREMQEKGLLLDVCIGDELVSGLKEEWRSKEAENVISEM 1169



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 68/376 (18%), Positives = 136/376 (36%), Gaps = 80/376 (21%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVV-------- 39
            M  +G +P+V ++ T+++ L                 D G   +V+++++++        
Sbjct: 858  MEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGK 917

Query: 40   -KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             +   +FS+       + +   YN +++  +  GK  +   +  ++   G KPDV TYN 
Sbjct: 918  IEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNS 977

Query: 99   MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
            +I     A      + + E +   GI   + T+  L++                  +EG 
Sbjct: 978  LISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISL---------------CTKEGI 1022

Query: 159  RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                KI  E+ L+                                       P+  +Y  
Sbjct: 1023 ELTKKIFGEMSLQ---------------------------------------PDLLVYNG 1043

Query: 219  LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
            ++  Y   G   D  +     ++  + +   D  TY +++   +K G +   R ++ EM 
Sbjct: 1044 VLHCYAVHG---DMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMK 1100

Query: 279  RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
               +     TY+I++KG+C+      A    REM +   +  DV   + L+ G      S
Sbjct: 1101 AREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLL-LDVCIGDELVSGLKEEWRS 1159

Query: 339  AGALTFFNEMRARGIA 354
              A    +EM  R + 
Sbjct: 1160 KEAENVISEMNGRKLG 1175


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 18/288 (6%)

Query: 151 VQAMRE-GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           + A RE     V   I+E +L   +  +E   DD   V+ ++L   I PS          
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIV-------- 232

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
                 Y TL+  +  EGRV    ++L  M  +      P  VTY  V++ L + G +++
Sbjct: 233 -----TYNTLLDSFFREGRVDQAAKLLREMEARPGGCL-PSDVTYNVVINGLARKGELEK 286

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A Q++  M R+   A+  T+N L+ GY  +  ++KA  L  EM ++  I P VV+YN +I
Sbjct: 287 AAQLVDRM-RMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEG-IVPTVVTYNTII 344

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G     +   A   F EMRA G+ P  I+Y +L+  +  +   K A  +F ++ R   +
Sbjct: 345 HGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKR-AGL 403

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
              ++ +N+L++GYCR+G +EEA+R  + M E G  P+V+TY  L NG
Sbjct: 404 APSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNG 451



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 168/388 (43%), Gaps = 30/388 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++     G  +     F +M   G  PD++TYN +I    +A      +++
Sbjct: 335 PTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWL 394

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G+   + T+  L+  Y   GDLE A    Q M E     C    + D+  Y+ 
Sbjct: 395 FGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVE---QGC----QPDVSTYTI 447

Query: 176 ENEGDDDDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
              G     +     E F+++L   + P          FA N+RI   L+ G  +E    
Sbjct: 448 LMNGSRKVRNLAMVREFFDEMLSKGLQPD--------CFAYNTRISAELILGSTSEAFQL 499

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             V +              D VTY   +  L K+G++  A  +  +M   G+  + ITY 
Sbjct: 500 TEVMI--------SRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYT 551

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+  +C++ ++ +A+++   M     + P  V+Y + I  +    +   A  +F +M  
Sbjct: 552 CLIHAHCERGRLREARDIFDGMLVSG-LPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLE 610

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G+ P +++Y  L+ A     +  LA + F EML +  +  +   + +L++G C+ G  E
Sbjct: 611 EGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEML-ERGLSPNKYTYTLLIDGNCKEGNWE 669

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGI 438
           EA R+   M ++G +P+  T+ +L  G 
Sbjct: 670 EAIRLYSEMHQHGIHPDHCTHNALFKGF 697



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 183/458 (39%), Gaps = 42/458 (9%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
            G LP    ++ V++ LA  G+      ++    +V R+R           K     +N 
Sbjct: 262 GGCLPSDVTYNVVINGLARKGE------LEKAAQLVDRMRM--------SKKASAFTFNP 307

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++      G  +K   L  +M   G  P V+TYN +I    R+            +  MG
Sbjct: 308 LITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMG 367

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +   + T+ SL+  Y   G+L+ A  +   ++        +   + L+ Y     GD ++
Sbjct: 368 LLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYC--RLGDLEE 425

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                ++++                  P+   YT LM G       S  VR L  +R   
Sbjct: 426 ARRFKQEMVEQGCQ-------------PDVSTYTILMNG-------SRKVRNLAMVREFF 465

Query: 244 D----NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           D        PD   Y T +SA +  GS   A Q+   M   G+ ++ +TYNI L G C+ 
Sbjct: 466 DEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKS 525

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +  A  L  +M  D  ++PD ++Y  LI           A   F+ M   G+ P+ ++
Sbjct: 526 GNLKDAYVLWMKMVSDG-LQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVT 584

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT  + A+        A   F +ML +  V+ + V +N+L+   CRMG    A +    M
Sbjct: 585 YTVFIHAYCRRGNLYSAYGWFQKMLEE-GVRPNEVTYNVLIHALCRMGRTNLAYQHFHEM 643

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            E G  PN  TY  L +G        EA+ L+ E+ + 
Sbjct: 644 LERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQH 681



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 191/488 (39%), Gaps = 45/488 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P    YN V+N  A  G+ +K  QL D+M     K    T+N +I    AR S +     
Sbjct: 266 PSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAFTFNPLITGYFARGSVEKAGAL 324

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            LE   E GI   + T+ +++      G++E A      MR        +    DL  Y+
Sbjct: 325 QLEMENE-GIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMR-------AMGLLPDLITYN 376

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S   G     +      L   +  +          AP+   Y  L+ GY   G + +  R
Sbjct: 377 SLINGYCKAGNLKEALWLFGDLKRAG--------LAPSVLTYNILLDGYCRLGDLEEARR 428

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               M  Q      PD  TYT +++   K  ++   R+   EM   G+  +   YN  + 
Sbjct: 429 FKQEMVEQ---GCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRIS 485

Query: 295 GYCQQLQIDKAKEL--LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
               +L +    E   L E+     I  D V+YNI +DG     +   A   + +M + G
Sbjct: 486 A---ELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDG 542

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  I+YT L+ A     + + A  +FD ML    +    V + + +  YCR G +  A
Sbjct: 543 LQPDCITYTCLIHAHCERGRLREARDIFDGMLVSG-LPPSAVTYTVFIHAYCRRGNLYSA 601

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
               ++M E G  PN  TY  L + +    +   A   + E+ ER               
Sbjct: 602 YGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLER--------------- 646

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             L P++     L D   +   + +A+ + + M +HGI P+   +  ++         SK
Sbjct: 647 -GLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQ--SK 703

Query: 533 HASQARQD 540
           HA Q  ++
Sbjct: 704 HAIQYMEN 711



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 129/331 (38%), Gaps = 34/331 (10%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R+G  P V  ++ ++      GD             ++  R+F    +    +PD + Y 
Sbjct: 400 RAGLAPSVLTYNILLDGYCRLGD-------------LEEARRFKQEMVEQGCQPDVSTYT 446

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            ++N    +       + FD+M   G +PD   YN  I              + E ++  
Sbjct: 447 ILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISR 506

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDD 181
           GI+    T+   +      G+L+ A  +   M  +G +  C     L    ++    G  
Sbjct: 507 GISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCL---IHAHCERGRL 563

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
            +  ++F+ +L + + PS+               YT  +  Y   G +       G  ++
Sbjct: 564 REARDIFDGMLVSGLPPSAV-------------TYTVFIHAYCRRGNLYSAY---GWFQK 607

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             +    P+ VTY  ++ AL + G  + A Q   EM   G+  N+ TY +L+ G C++  
Sbjct: 608 MLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGN 667

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            ++A  L  EM     I PD  ++N L  GF
Sbjct: 668 WEEAIRLYSEMHQHG-IHPDHCTHNALFKGF 697


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 200/464 (43%), Gaps = 67/464 (14%)

Query: 30  ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
           E+++ F  + KR R F          P T + N +L+  A LGK     + F  M   GA
Sbjct: 210 EAIQCFSKM-KRFRVF----------PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGA 258

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           +P V TYN+MI    +         + E +   G+     T+ S++  +   G L+    
Sbjct: 259 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 318

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
             + M    +D+C    E D+  Y++            F K     I       +     
Sbjct: 319 FFEEM----KDMCC---EPDVITYNAL--------INCFCKFGKLPIGLEFYREMKGNGL 363

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN   Y+TL+  +  EG +   ++    MRR       P+  TYT+++ A  K G++  
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRV---GLVPNEYTYTSLIDANCKIGNLSD 420

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A ++  EM ++GV  N +TY  L+ G C   ++ +A+EL  +M D A + P++ SYN LI
Sbjct: 421 AFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM-DTAGVIPNLASYNALI 479

Query: 330 DGFILIDDSAGALTFFNEMRARGIAP---------------------------------- 355
            GF+   +   AL   NE++ RGI P                                  
Sbjct: 480 HGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIK 539

Query: 356 -TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              + YTTLM A+  S  P     + DEM ++  ++V +V + +L++G C+  LV +A  
Sbjct: 540 ANSLIYTTLMDAYFKSGNPTEGLHLLDEM-KELDIEVTVVTFCVLIDGLCKNKLVSKAVD 598

Query: 415 IIERMKEN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              R+  + G   N A + ++ +G+    +   A  L++++ ++
Sbjct: 599 YFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 642



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 181/401 (45%), Gaps = 33/401 (8%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLL 112
            +PD   YNA++N     GK    L+ + +M   G KP+V++Y+ ++   C     +  +
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            F ++ +  +G+     T+ SL+ A    G+L        A R G  ++ ++  E ++  
Sbjct: 388 KFYVD-MRRVGLVPNEYTYTSLIDANCKIGNLS------DAFRLG-NEMLQVGVEWNVVT 439

Query: 173 YSSENEGDDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y++  +G  D     + +E+F K+    +              PN   Y  L+ G++   
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGV-------------IPNLASYNALIHGFVKAK 486

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            +   + +L  ++ +      PD + Y T +  L     ++ A+ V+ EM   G+ AN +
Sbjct: 487 NMDRALELLNELKGR---GIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSL 543

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            Y  L+  Y +     +   LL EM  +  IE  VV++ +LIDG       + A+ +FN 
Sbjct: 544 IYTTLMDAYFKSGNPTEGLHLLDEMK-ELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 602

Query: 348 MRAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +    G+      +T ++      +Q + A  +F++M++   V  D  A+  L++G  + 
Sbjct: 603 ISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP-DRTAYTSLMDGNFKQ 661

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           G V EA  + ++M E G   ++  Y SL  G+S   +  +A
Sbjct: 662 GNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 702



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 182/413 (44%), Gaps = 34/413 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V ++ST+V    A   +G ++    F V ++RV             P+   
Sbjct: 358 MKGNGLKPNVVSYSTLVD---AFCKEGMMQQAIKFYVDMRRV----------GLVPNEYT 404

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++A   +G      +L ++M + G + +V+TY  +I     A R      +  ++ 
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMD 464

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + ++ +L+  +V   +++ A  ++  ++ GR      I+  DL  Y +   G 
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELK-GRG-----IKP-DLLLYGTFIWGL 517

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
              +     K++ N +               NS IYTTLM  Y   G  ++ + +L  M+
Sbjct: 518 CSLEKIEAAKVVMNEMKECG--------IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMK 569

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYNILLKGYCQQ 299
             +   +    VT+  ++  L K   + +A      ++   G+ AN   +  ++ G C+ 
Sbjct: 570 ELDIEVTV---VTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 626

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q++ A  L  +M     + PD  +Y  L+DG     +   AL   ++M   G+    ++
Sbjct: 627 NQVEAATTLFEQMVQKGLV-PDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLA 685

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           YT+L+   +  +Q + A    +EM+ +     +++  ++L + Y  +G ++EA
Sbjct: 686 YTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHY-ELGCIDEA 737



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 99/276 (35%), Gaps = 53/276 (19%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N   P    +  + S L+  G ++ A Q  ++M R                         
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRF------------------------ 221

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
                       ++ P   S N L+  F  +  +     FF +M   G  PT  +Y  ++
Sbjct: 222 ------------RVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMI 269

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                    + A  +F+EM     V  D V +N +++G+ ++G +++     E MK+   
Sbjct: 270 DCMCKEGDVEAARGLFEEMKFRGLVP-DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 328

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            P+V TY +L N      K    L  ++E+K                   LKP+      
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGN----------------GLKPNVVSYST 372

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L D   +    ++A++    M   G+ PN+  Y  +
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 408



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 26/275 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+ A+YNA+++         + L+L +++   G KPD+L Y   I       +      V
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV-----CKIIREL-- 168
           +  + E GI      + +L+ AY   G+      ++  M+E   +V     C +I  L  
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589

Query: 169 -----DLEDYSS--ENEGDDDDDDEVFEKLLP-----NSINPSSE--PPLLPKTFAPNSR 214
                   DY +   N+     +  +F  ++      N +  ++     ++ K   P+  
Sbjct: 590 NKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 649

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMR-RQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
            YT+LM G   +G V + +    A+R +  +     D + YT++V  L     + +AR  
Sbjct: 650 AYTSLMDGNFKQGNVLEAL----ALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSF 705

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           L EM   G+  + +    +LK + +   ID+A EL
Sbjct: 706 LEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/496 (23%), Positives = 215/496 (43%), Gaps = 66/496 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD A +  +++ C + G          Q+ + G + D + +  +++ LCA+      +  
Sbjct: 11  PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAMNI 70

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL R+ E+G T  + ++ +L+         E A  ++  M E   +    +       + 
Sbjct: 71  VLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHG 130

Query: 175 SENEGDDDDDDEVFEKLL-----PNSINPSSEPPLLPKTFA-----------------PN 212
              EGD      +F K+L     PN +  +S    L K  A                 PN
Sbjct: 131 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPN 190

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y +L+ GY++ G+ ++ VR+L  M R   +   P+ VTY  ++  L K+G    AR+
Sbjct: 191 CTTYNSLIHGYLSSGQWTEAVRILKEMSR---DGQRPNVVTYNMLIDCLCKSGFHAEARE 247

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQ---LQIDKAKELLREMA---------------- 313
           +   M + G   +  TY  LL GY  +   ++++  K+L+ +                  
Sbjct: 248 IFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYC 307

Query: 314 -----DDAKIE----------PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
                D+A +           PD+V+Y  +IDG   I     A++ F +M   G++P  I
Sbjct: 308 KCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNII 367

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++TTL+  F++  + + A ++F EM+ D  +  D+  +  +++   + G V EA+++ + 
Sbjct: 368 TFTTLIHGFSMYGKWEKAEELFYEMM-DRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDL 426

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN----ADSDLPPP 474
           M   G  PNV +Y ++ +G  +A + GE + L  ++     +K   V      D  +   
Sbjct: 427 MPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML-LIGLKPTAVTFNTLLDGMVSMG 485

Query: 475 LKPDEELLDALADICV 490
           LKPD +    L D C 
Sbjct: 486 LKPDVDTCKTLIDSCC 501



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 200/462 (43%), Gaps = 65/462 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V ++ST++  L A  +    E+ +L  ++ +      D D   +  PD  +Y+ V
Sbjct: 79  GCTPDVFSYSTLLKGLCA--EKKCEEAAELIHMMAE------DGD---NCPPDVVSYSTV 127

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G   K   LF +M + G  P+V+T N +I    +         VL+++++  I
Sbjct: 128 IHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHI 187

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDD 183
               TT+ SL+  Y+  G    A  I++ M R+G+R    ++    L D   ++ G   +
Sbjct: 188 MPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP--NVVTYNMLIDCLCKS-GFHAE 244

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             E+F  ++ +           PK   P++  Y +L+ GY  EG + +   +   M +  
Sbjct: 245 AREIFNSMIQSG----------PK---PDATTYGSLLHGYATEGNLVEMNNVKDLMVQNG 291

Query: 244 DNASH--------------------------------PDHVTYTTVVSALVKAGSMDRAR 271
             ++H                                PD VTYTTV+  L K G +D A 
Sbjct: 292 MRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAM 351

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
               +M   G+  N IT+  L+ G+    + +KA+EL  EM D   I PDV  +  +ID 
Sbjct: 352 SRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRG-IPPDVTIFTAMIDR 410

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                    A   F+ M   G  P  +SY T++  + ++ +     K+ D+ML    +K 
Sbjct: 411 LFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLL-IGLKP 469

Query: 392 DIVAWNMLVEGYCRMGL---VEEAKRIIERMKENGFYPNVAT 430
             V +N L++G   MGL   V+  K +I+   E+G   ++ T
Sbjct: 470 TAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILT 511



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 158/365 (43%), Gaps = 58/365 (15%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   Y+TL+KG   E +  +   ++  M    DN   PD V+Y+TV+    K G + +
Sbjct: 81  TPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCP-PDVVSYSTVIHGFFKEGDVGK 139

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +  +M   G+P N +T N ++ G C+   +DKA+ +L++M D+  I P+  +YN LI
Sbjct: 140 AYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE-HIMPNCTTYNSLI 198

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G++       A+    EM   G  P  ++Y  L+     S     A ++F+ M++    
Sbjct: 199 HGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGP- 257

Query: 390 KVDIVAWNMLVEG-----------------------------------YCRMGLVEEAKR 414
           K D   +  L+ G                                   YC+ G ++EA  
Sbjct: 258 KPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASL 317

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
              +M++ GF P++ TY ++ +G+    +  +A+         C++  +G      L P 
Sbjct: 318 TFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAM------SRFCQMIDDG------LSPN 365

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           +     L+   +        + KA E+   M + GIPP+ T    I+  M  R+F     
Sbjct: 366 IITFTTLIHGFS----MYGKWEKAEELFYEMMDRGIPPDVT----IFTAMIDRLFKEGKV 417

Query: 535 SQARQ 539
           ++A++
Sbjct: 418 TEAQK 422


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 216/474 (45%), Gaps = 44/474 (9%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRK 109
           V   +PD    N ++N   +LG+      +  ++ + G +P+ +T N ++K LC +   K
Sbjct: 38  VKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVK 97

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRE 167
             L F  ++++  G  +   ++ +L+      G+   A  +++ +  R  R +V      
Sbjct: 98  KSLHFH-DKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVM---- 152

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                Y++  +G   D      KL+  + +  SE  +  +   PN   Y+TL+ G+   G
Sbjct: 153 -----YNTIIDGLCKD------KLVNEAYDLYSE--MDARGIFPNVITYSTLIYGFCLAG 199

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           ++ +   +L  M  +  N   P+  TYT ++ AL K G +  A+ +LA MT+ GV  N +
Sbjct: 200 QLMEAFGLLNEMILKNIN---PNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVV 256

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           +YN L+ GYC   ++  AK++   M     + P+V SYNI+ID          A+    E
Sbjct: 257 SYNTLMDGYCLIGEVQNAKQMFHTMVQKG-VNPNVYSYNIMIDRLCKSKRVDEAMNLLRE 315

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           +  + + P  ++Y++L+  F    +   A  +  EM    +   D+V +  L++  C+  
Sbjct: 316 VLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ-PADVVTYTSLLDALCKNQ 374

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CEVKKEGVN 466
            +++A  +  +MKE G  PN  TY +L +G+    +   A  L++ +  + C +     N
Sbjct: 375 NLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYN 434

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                             ++ +C +     +AL + + MEE+G  P+   ++ I
Sbjct: 435 V----------------MISGLC-KEGMLDEALAMKSKMEENGCIPDAVTFEII 471



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 126/272 (46%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + +  +V +LVK      A  +  +M   G+  +  T NIL+  +C   Q+  +  +
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L ++      +P+ ++ N L+ G  L  +   +L F +++ A+G    ++SY TL+    
Sbjct: 68  LGKIL-KLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLC 126

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              + + A K+   M+ D   + ++V +N +++G C+  LV EA  +   M   G +PNV
Sbjct: 127 KIGETRSALKLL-RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNV 185

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY +L  G  LA +  EA  L  E+  +            ++ P +     L+DAL   
Sbjct: 186 ITYSTLIYGFCLAGQLMEAFGLLNEMILK------------NINPNVYTYTILMDALC-- 231

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +    ++A  ++A M + G+ PN   Y  +
Sbjct: 232 --KEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 116/258 (44%), Gaps = 18/258 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+  +YN +++    +G+ +   Q+F  M + G  P+V +YN+MI    ++ R    + 
Sbjct: 252 KPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMN 311

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +L   +     T+ SL+  +   G +  A  +++ M   R     ++    L D  
Sbjct: 312 LLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYH-RGQPADVVTYTSLLDAL 370

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N+ + D    +F K+    I P             N   YT L+ G    GR  +  +
Sbjct: 371 CKNQ-NLDKATALFMKMKERGIQP-------------NKYTYTALIDGLCKGGRHKNAQK 416

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   +  +       +  TY  ++S L K G +D A  + ++M   G   + +T+ I+++
Sbjct: 417 LFQHLLVK---GCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIR 473

Query: 295 GYCQQLQIDKAKELLREM 312
              ++ Q DKA++LL EM
Sbjct: 474 SLFEKDQNDKAEKLLHEM 491



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/442 (19%), Positives = 167/442 (37%), Gaps = 109/442 (24%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P+    +T++  L   G+             VK+   F D  +    + D  +
Sbjct: 71  ILKLGYQPNTITLNTLMKGLCLKGE-------------VKKSLHFHDKVVAQGFQMDQVS 117

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  +LN    +G+ +  L+L   + +   +P+V+ YN +I  LC    +  L+    +  
Sbjct: 118 YATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLC----KDKLVNEAYDLY 173

Query: 120 LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM---------------------- 154
            EM   GI   + T+ +L+  +   G L  A  ++  M                      
Sbjct: 174 SEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKE 233

Query: 155 ---REGRRDVCKIIRELDLEDYSSENE--------GDDDDDDEVFEKLLPNSINPSSEP- 202
              +E +  +  + +E    +  S N         G+  +  ++F  ++   +NP+    
Sbjct: 234 GKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSY 293

Query: 203 ---------------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM-- 239
                                 +L K   PN+  Y++L+ G+   GR++  + +L  M  
Sbjct: 294 NIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYH 353

Query: 240 ------------------------------RRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
                                          + ++    P+  TYT ++  L K G    
Sbjct: 354 RGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKN 413

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A+++   +   G   N  TYN+++ G C++  +D+A  +  +M ++  I PD V++ I+I
Sbjct: 414 AQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCI-PDAVTFEIII 472

Query: 330 DGFILIDDSAGALTFFNEMRAR 351
                 D +  A    +EM A+
Sbjct: 473 RSLFEKDQNDKAEKLLHEMIAK 494


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 210/495 (42%), Gaps = 57/495 (11%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           ++  P+  ++N V+ A   LG   + +++F +M     +PDV TY  ++    +  R   
Sbjct: 166 TNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDE 225

Query: 112 LVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCK 163
            V +L+   EM I  C     TF  L+      GD+     +V  M              
Sbjct: 226 AVLLLD---EMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNT 282

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           II  L L+       G  D    + ++++ +                PN   Y TL+ G 
Sbjct: 283 IINGLCLK-------GKLDKAVSLLDRMVASKC-------------VPNDVTYGTLINGL 322

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
           + +GR  D V +L ++   E+   H +   Y+T++S L K    + A  +  +M   G  
Sbjct: 323 VKQGRSVDGVHLLSSL---EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQ 379

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N + Y+ L+ G C++ ++D+AKE+L EM +     P+  +Y+ LI GF    +S  A+ 
Sbjct: 380 PNIVVYSALIDGLCREGKLDEAKEILCEMVNKG-CTPNAFTYSSLIKGFFKTGNSQKAIR 438

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
            + EM      P +I Y+ L+       + + A  ++  ML    ++ D+VA++ ++ G 
Sbjct: 439 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHML-GRGLRPDVVAYSSMIHGL 497

Query: 404 CRMGLVEEAKRIIERM--KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           C  G VE   ++   M  +E+   P+V TY  L   +        A+ L   + +R    
Sbjct: 498 CNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR---- 553

Query: 462 KEGVNAD------------SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
             G N D              L PP +   E LD L     +      A +I+  M +  
Sbjct: 554 --GCNPDLITCNIFLNALREKLNPP-QDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKF 610

Query: 510 IPPNKTKYKKIYVEM 524
           +PPN + +++I  E+
Sbjct: 611 LPPNASTWERIIPEL 625



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/429 (21%), Positives = 167/429 (38%), Gaps = 49/429 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P    ++ +++ L   GD             + RV K  D   +    P+   YN +
Sbjct: 237 GCFPSSVTFNVLINGLCKKGD-------------MVRVTKLVDNMFLKGCVPNEVTYNTI 283

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     GK  K + L D+M      P+ +TY  +I    +  R    V +L  + E G 
Sbjct: 284 INGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH 343

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                 + +L++        E A  + + M E       ++    ++      EG  D+ 
Sbjct: 344 HANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLC--REGKLDEA 401

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
            E+  +             ++ K   PN+  Y++L+KG+   G     +R+   M +   
Sbjct: 402 KEILCE-------------MVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK--- 445

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N   P+ + Y+ ++  L + G +  A  +   M   G+  + + Y+ ++ G C    ++ 
Sbjct: 446 NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEV 505

Query: 305 AKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
             +L  EM   ++  +PDVV+YNIL+      +  + A+   N M  RG  P  I+    
Sbjct: 506 GLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIF 565

Query: 364 MKAFALSSQPKLANKVF-DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           + A      P    + F DE++     +  IV                 A +IIE M + 
Sbjct: 566 LNALREKLNPPQDGREFLDELVVRLHKRQRIVG----------------AAKIIEVMLQK 609

Query: 423 GFYPNVATY 431
              PN +T+
Sbjct: 610 FLPPNASTW 618



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 107/254 (42%), Gaps = 7/254 (2%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           ++      + +L++ Y N G      ++   M+R+       +   +  V  A  KA   
Sbjct: 59  SYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKN---FILVFRAYGKAHLP 115

Query: 268 DRARQVLAEMT-RIGVPANRITYNILLKGYCQQLQIDKAKELLR-EMADDAKIEPDVVSY 325
           ++A ++   M           ++N +L    Q+    +A E     +     I P+V+S+
Sbjct: 116 EKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSF 175

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N++I     +     A+  F EM  +   P   +Y TLM       +   A  + DEM  
Sbjct: 176 NLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQI 235

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           +       V +N+L+ G C+ G +    ++++ M   G  PN  TY ++ NG+ L  K  
Sbjct: 236 EGCFPSS-VTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLD 294

Query: 446 EAL-LLWKEIKERC 458
           +A+ LL + +  +C
Sbjct: 295 KAVSLLDRMVASKC 308



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G  P V A+S+++  L  +G    VE  +KLF+ ++ +          SDS+PD  
Sbjct: 478 MLGRGLRPDVVAYSSMIHGLCNAGS---VEVGLKLFNEMLCQE---------SDSQPDVV 525

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
            YN +L A          + L + M + G  PD++T N+ +
Sbjct: 526 TYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFL 566


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 143/276 (51%), Gaps = 9/276 (3%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   P    Y T++ G    GR+ + + +   M R+      PD  TY+ +++ L  +  
Sbjct: 269 KGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPH--LKPDMFTYSALINGLNLSNR 326

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            ++A ++  EM   G   + +TYN LL G C+    DKA E+ R+M      +P+V++Y 
Sbjct: 327 GEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYT 386

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +LID F  +D    A+    EM  R + P  +++TT+++     S+   A+++F+ + + 
Sbjct: 387 VLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGK- 445

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
              K D V +N ++ GYC++  +++AK++ +RM ++G  P +ATY +L  G     +  +
Sbjct: 446 -TCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSD 504

Query: 447 ALLLWKEIKERCEVKKEGV-----NADSDLPPPLKP 477
           AL+++ E+ E     +  +        +D PPP +P
Sbjct: 505 ALIMYHEMIEMGFPPERHLAELVDRTRTDHPPPRRP 540



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 129/250 (51%), Gaps = 6/250 (2%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           +   F P+   Y TLM G+   G V   + + G M+    ++      ++  V+  L   
Sbjct: 129 MKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMK----DSGIAVLRSHNIVLRGLCSG 184

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +  A +V  +M+ I  P N I+Y I++ G C+  ++DKA  L ++M D A I PDVV+
Sbjct: 185 GKISMAWEVFKDMSGIFSP-NLISYTIMIDGLCKSRKVDKAITLFKQMVDKA-IYPDVVT 242

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y  LIDG         A   F E RA+G  PT ++Y T++       + + A  ++D+M+
Sbjct: 243 YGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMV 302

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           R+P +K D+  ++ L+ G       E+A  + E M + G  P+V TY +L +G+  +   
Sbjct: 303 REPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCE 362

Query: 445 GEALLLWKEI 454
            +A+ +++++
Sbjct: 363 DKAMEIFRKM 372



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 120/251 (47%), Gaps = 3/251 (1%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F+PN   YT ++ G     +V   + +    ++  D A +PD VTY  ++  L K   + 
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLF---KQMVDKAIYPDVVTYGALIDGLGKQRRVK 257

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +  E    G     +TYN ++ G C+  +I+ A  L  +M  +  ++PD+ +Y+ L
Sbjct: 258 EAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSAL 317

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G  L +    A   + EM   G +P  ++Y TL+     S     A ++F +M     
Sbjct: 318 INGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNV 377

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              +++ + +L++ +C++  + +A ++ + M+     P+  T+ ++   +    +  EA 
Sbjct: 378 CDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAH 437

Query: 449 LLWKEIKERCE 459
            L++ I + C+
Sbjct: 438 ELFESIGKTCK 448



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 31/326 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +Y  +++      K  K + LF QM +    PDV+TY  +I    +  R      +
Sbjct: 203 PNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDL 262

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
            E     G    + T+ +++      G +E A T+   M RE             +   +
Sbjct: 263 FEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLN 322

Query: 175 SENEGDDDDDDEVFEKLLPNSINPS--SEPPLL---------------------PKTFAP 211
             N G  +   E++E++L    +P   +   LL                          P
Sbjct: 323 LSNRG--EKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDP 380

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N   YT L+  +    R+ D V++   M   E  +  PD VT+TTV+  L K   +D A 
Sbjct: 381 NVITYTVLIDRFCKVDRLGDAVKLAKEM---EGRSLLPDAVTFTTVIQKLCKESRIDEAH 437

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++   + +   P + + +N +L GYC+  +ID AK+L   M D     P + +Y  L+ G
Sbjct: 438 ELFESIGKTCKP-DSVLFNTMLAGYCKITRIDDAKKLHDRMLDSG-CAPTLATYTALVTG 495

Query: 332 FILIDDSAGALTFFNEMRARGIAPTK 357
           F      + AL  ++EM   G  P +
Sbjct: 496 FCRTGRYSDALIMYHEMIEMGFPPER 521



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 50/269 (18%)

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           NR T N LL  Y +  +++ A    +    +   EPD VSYN L++GF    D   AL  
Sbjct: 101 NRFTCNNLLSVYVKARRVEDAHLFFQSHMKNV-FEPDEVSYNTLMNGFFKAGDVKKALAL 159

Query: 345 FNEMRARGIA---------------------------------PTKISYTTLMKAFALSS 371
           F EM+  GIA                                 P  ISYT ++     S 
Sbjct: 160 FGEMKDSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSR 219

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +   A  +F +M+ D  +  D+V +  L++G  +   V+EA  + E  +  G +P V TY
Sbjct: 220 KVDKAITLFKQMV-DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTY 278

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            ++ +G+    +   AL L+ ++                  P LKPD     AL +    
Sbjct: 279 NTMIDGLCKCGRIENALTLYDDMVRE---------------PHLKPDMFTYSALINGLNL 323

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +    KA E+   M + G  P+   Y  +
Sbjct: 324 SNRGEKAYELYEEMLDTGCSPDVVTYNTL 352



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 54/294 (18%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G  P V  ++T++  L   G    +E ++ L+D +V+      +P +    KPD   Y+A
Sbjct: 270 GCHPTVVTYNTMIDGLCKCGR---IENALTLYDDMVR------EPHL----KPDMFTYSA 316

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEM 122
           ++N      + +K  +L+++M + G  PDV+TYN ++  LC            +E   +M
Sbjct: 317 LINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDK----AMEIFRKM 372

Query: 123 GI-TLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRR------DVCKIIRELDLED 172
           G+  +C   + T+  L+  +     L  A  + + M EGR           +I++L    
Sbjct: 373 GVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEM-EGRSLLPDAVTFTTVIQKL---- 427

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                E   D+  E+FE               + KT  P+S ++ T++ GY    R+ D 
Sbjct: 428 ---CKESRIDEAHELFES--------------IGKTCKPDSVLFNTMLAGYCKITRIDDA 470

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            ++     R  D+   P   TYT +V+   + G    A  +  EM  +G P  R
Sbjct: 471 KKL---HDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPER 521


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y T++      G       +L AM  +   A  P+ V+YT ++ AL      D+A  +L 
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   GV A+ +TY  L++G C   ++DKA EL+ EM +   IEP+VV Y+ L+ G+   
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG-IEPNVVVYSSLLQGYCKS 198

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                    F EM  +GI P  + YT L+ +     + K A+ V D M+R   ++ ++V 
Sbjct: 199 GRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRG-LEPNVVT 257

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L+   C+ G V+EA  ++++M E G  P+V TY +L  G+S   +  EA+ L +E+ 
Sbjct: 258 YNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEM- 316

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                    V   + + P +     ++  L DI       R+A ++ A MEE G   N  
Sbjct: 317 ---------VRGKNIVKPNVVTFNSVIQGLCDI----GRMRQAFQVRAMMEETGCMVNLV 363

Query: 516 KY 517
            Y
Sbjct: 364 TY 365



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 186/404 (46%), Gaps = 23/404 (5%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           +L D  V  +R      +    + D   Y  ++    +  +  K ++L  +M E G +P+
Sbjct: 129 RLADQAVGLLRSMRSAGV----RADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPN 184

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           V+ Y+ +++   ++ R   +  V   + E GI   +  +  L+ +    G  + A  ++ 
Sbjct: 185 VVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMD 244

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
            M   RR +   +   ++       EG   +   V +K+        SE     K  AP+
Sbjct: 245 MMV--RRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM--------SE-----KGVAPD 289

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y TL+KG  +   + + + +L  M R + N   P+ VT+ +V+  L   G M +A Q
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMVRGK-NIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V A M   G   N +TYN+L+ G  +  ++ KA EL+ EM     +EPD  +Y+ILI GF
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMT-SLGLEPDSFTYSILIKGF 407

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
             +     A    + MR RGI P    Y  L+ A       + A  +F+EM  D    +D
Sbjct: 408 CKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM--DNNFPLD 465

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
           +VA++ ++ G C+ G ++ AK +++ + + G  P+  TY  + N
Sbjct: 466 VVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVIN 509



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 206/455 (45%), Gaps = 69/455 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P+V  +S+++     SG          ++ V K   + S+  I    +PD   
Sbjct: 176 MCESGIEPNVVVYSSLLQGYCKSGR---------WEDVGKVFVEMSEKGI----EPDVVM 222

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++++   +GK KK   + D M   G +P+V+TYNV+I  +C   S K   + VL+++
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEA-IGVLKKM 281

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            E G+   + T+ +L+       +++ A  +++ M  G+  V                  
Sbjct: 282 SEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIV------------------ 323

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                          PN   + ++++G  + GR+    ++   M
Sbjct: 324 ------------------------------KPNVVTFNSVIQGLCDIGRMRQAFQVRAMM 353

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
              E+     + VTY  ++  L++   + +A +++ EMT +G+  +  TY+IL+KG+C+ 
Sbjct: 354 ---EETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKM 410

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+D+A++LL  M D   IEP++  Y  L+           A   FNEM         ++
Sbjct: 411 WQVDRAEDLLSTMRDRG-IEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDVVA 468

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+T++     +   K A ++   ++ D  +  D V +++++  + + G +E A  ++++M
Sbjct: 469 YSTMIHGACKAGDLKTAKELLKSIV-DEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             +GF P+VA + SL  G S   +  + L L +E+
Sbjct: 528 TASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 153/349 (43%), Gaps = 54/349 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  YT LM+    + R++D  + +G +R         D VTY T++  L  A  +D+A
Sbjct: 113 PNAVSYTVLMRALCAD-RLAD--QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKA 169

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------- 316
            +++ EM   G+  N + Y+ LL+GYC+  + +   ++  EM++                
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDS 229

Query: 317 --------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                                +EP+VV+YN+LI+          A+    +M  +G+AP 
Sbjct: 230 LCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPR-VKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            ++Y TL+K  +   +   A  + +EM+R    VK ++V +N +++G C +G + +A ++
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
              M+E G   N+ TY  L  G+    K  +A+ L  E+                    L
Sbjct: 350 RAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSL----------------GL 393

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
           +PD      L     +     +A ++++ M + GI P    Y  + V M
Sbjct: 394 EPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 194/412 (47%), Gaps = 25/412 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  ++  ++ AC N+G+  +  +  + M E G   D  T  ++I    +    + +V  
Sbjct: 222 PDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGY 281

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
             +++EMG+   +  F +L+      G ++ A  +++ M R G +    +     L D  
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKP--NVYTHTTLIDGL 339

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            + +G  +    +F KL+ +              + PN   YT ++ GY  E +++    
Sbjct: 340 CK-KGWTEKAFRLFLKLVRSD------------GYKPNVHTYTAMINGYCKEDKLNRAEM 386

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M+ Q      P+  TYTT++    K G+  RA +++  M + G   N  TYN ++ 
Sbjct: 387 LLSRMQEQ---GLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C++  +D+A  LL +++    ++ D V+Y IL+       D+  +L FFN+M   G  
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHG-LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFT 502

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   SYTTL+  F    Q K + ++F+E +    +       +M+  GYCR G    A +
Sbjct: 503 PDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMIC-GYCRYGNTSLAVK 561

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----CEVKK 462
           + +RM  +G  P+  TYG+L +G+    K  +A  L+  + ++    CEV +
Sbjct: 562 LFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTR 613



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 188/465 (40%), Gaps = 50/465 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVK-LFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+  G  P+V  ++ +++ L   G      S+K  F+++ + VR+          KP+  
Sbjct: 285 MVEMGLAPNVINFTALINGLCKQG------SIKQAFELLEEMVRR--------GWKPNVY 330

Query: 60  AYNAVLNACANLGKPKKFLQLFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
            +  +++     G  +K  +LF ++    G KP+V TY  MI    +  + +    +L R
Sbjct: 331 THTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSR 390

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSEN 177
           + E G+     T+ +L+  +   G+   A  ++  M +EG           ++  Y++  
Sbjct: 391 MQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSP--------NIYTYNAII 442

Query: 178 EG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +G       DE +  L   S++              +   YT LM  +    R +DT R 
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHG----------LQADGVTYTILMSVHC---RQADTNRS 489

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    +       PD  +YTT++S   +   M  + ++  E   +G+   + TY  ++ G
Sbjct: 490 LVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICG 549

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+      A +L + M++     PD ++Y  LI G         A   ++ M  +G++P
Sbjct: 550 YCRYGNTSLAVKLFQRMSNHG-CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSP 608

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            +++  TL   +        A  V D + +   ++      N LV   C  G ++ A   
Sbjct: 609 CEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIR----TVNTLVRKLCSEGKLDMAALF 664

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CE 459
             ++ +     N  T     N    + K G    L  E+ ER CE
Sbjct: 665 FHKLLDKEPNVNRVTLLGFMNKCYESNKYG----LVSELSERICE 705



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 129/316 (40%), Gaps = 56/316 (17%)

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           + +   ++  +   G++ + V M+  M+ Q      P   T   V+   V  G ++ A  
Sbjct: 154 NEVMQCMVMNFAENGKLKEAVNMVVEMQNQ---GLVPSTQTLNCVLDVAVGMGLVEIAEN 210

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +  EM + GV  + +++ +++   C   ++ +A+  L  M +   I  D  +  ++ID F
Sbjct: 211 MFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFI-VDNATCTLIIDAF 269

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                    + +F +M   G+AP  I++T L                             
Sbjct: 270 CQKGYVNRVVGYFWKMVEMGLAPNVINFTAL----------------------------- 300

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
                  + G C+ G +++A  ++E M   G+ PNV T+ +L +G+    K G     W 
Sbjct: 301 -------INGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLC---KKG-----WT 345

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E   R  +K   V +D       KP+     A+ +   +     +A  +++ M+E G+ P
Sbjct: 346 EKAFRLFLKL--VRSDG-----YKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVP 398

Query: 513 NKTKYKKIYVEMHSRM 528
           N   Y  + ++ H ++
Sbjct: 399 NTNTYTTL-IDGHCKV 413


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 208/485 (42%), Gaps = 45/485 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++     G P+K  ++ ++M     +P ++T+N ++K   +A        V
Sbjct: 247 PSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENV 306

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA----ETIVQAMREGRRDVCKIIRELDLE 171
           L+ + ++G      TF  L   Y      E A    ET V +  +     C I+      
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLN---- 362

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             +   EG  +  +E+  + +              K   PN  IY T++ GY  +G +  
Sbjct: 363 --ALCKEGKIEKAEEILGREMA-------------KGLVPNEVIYNTMIDGYCRKGDLVG 407

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
               + AM +Q      PDH+ Y  ++    + G M+ A + + +M   GV  +  TYNI
Sbjct: 408 ARMKIEAMEKQ---GMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNI 464

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GY ++ + DK  ++L+EM D+  + P+VVSY  LI+          A     +M  R
Sbjct: 465 LIGGYGRKYEFDKCFDILKEMEDNGTM-PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDR 523

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G++P    Y  L+       + + A +   EML+   +++++V +N L++G    G + E
Sbjct: 524 GVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKG-IELNLVTYNTLIDGLSMTGKLSE 582

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK---------- 461
           A+ ++  +   G  P+V TY SL +G   A      + L++E+K R  +K          
Sbjct: 583 AEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMK-RSGIKPTLKTYHLLI 641

Query: 462 ----KEGVNADSDL--PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
               KEG+     L     LKPD  + + +           KA  +   M E  I  +KT
Sbjct: 642 SLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKT 701

Query: 516 KYKKI 520
            Y  +
Sbjct: 702 TYNSL 706



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/509 (23%), Positives = 215/509 (42%), Gaps = 56/509 (11%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           SD +P    Y   + A   L    K L+LF++M      P V  YNV+I    +  R + 
Sbjct: 173 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND 232

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              + + +L   +   + T+ +L+  Y   G+ E +  + + M+    +   I     L+
Sbjct: 233 AEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLK 292

Query: 172 DYSSENEGDDDDDDEVFEKL-----LPN-----------SINPSSEPPLLPKTFAPNSRI 215
                  G  +D + V +++     +P+           S N  +E  L     A +S +
Sbjct: 293 GLF--KAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGV 350

Query: 216 ----YTT--LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
               YT   L+     EG++     +LG   R+      P+ V Y T++    + G +  
Sbjct: 351 KMNAYTCSILLNALCKEGKIEKAEEILG---REMAKGLVPNEVIYNTMIDGYCRKGDLVG 407

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR  +  M + G+  + + YN L++ +C+  +++ A++ + +M     + P V +YNILI
Sbjct: 408 ARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKG-VSPSVETYNILI 466

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G+    +         EM   G  P  +SY TL+      S+  L  ++    + D  V
Sbjct: 467 GGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKL-LEAQIVKRDMEDRGV 525

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-- 447
              +  +NML++G C  G +E+A R  + M + G   N+ TY +L +G+S+  K  EA  
Sbjct: 526 SPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAED 585

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           LLL        E+ ++G          LKPD    ++L      A   ++ + +   M+ 
Sbjct: 586 LLL--------EISRKG----------LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKR 627

Query: 508 HGIPPNKTKYK-------KIYVEMHSRMF 529
            GI P    Y        K  +E+  R+F
Sbjct: 628 SGIKPTLKTYHLLISLCTKEGIELTERLF 656



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 32/337 (9%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L   F P+  +Y   ++  +   ++SD  + L    R + +  +P    Y  ++  L K
Sbjct: 170 ILESDFRPSKFMYGKAIQAAV---KLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCK 226

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              M+ A Q+  EM    +  + ITYN L+ GYC+    +K+ ++   M  D  IEP ++
Sbjct: 227 GKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD-HIEPSLI 285

Query: 324 SYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           ++N L+ G     +++D+   L    EM+  G  P   +++ L   ++ + + + A  V+
Sbjct: 286 TFNTLLKGLFKAGMVEDAENVL---KEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVY 342

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG--- 437
           +  + D  VK++    ++L+   C+ G +E+A+ I+ R    G  PN   Y ++ +G   
Sbjct: 343 ETAV-DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCR 401

Query: 438 ----------ISLARKPG---EALLLWKEIKERCEVKKEGVNADSDLP----PPLKPDEE 480
                     I    K G   + L     I+  CE+  E  NA+ ++       + P  E
Sbjct: 402 KGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCEL-GEMENAEKEVNKMKLKGVSPSVE 460

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             + L     R   F K  +I+  ME++G  PN   Y
Sbjct: 461 TYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSY 497



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 175/404 (43%), Gaps = 26/404 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD  AYN ++     LG+ +   +  ++M   G  P V TYN++I    R         
Sbjct: 421 KPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFD 480

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+ + + G    + ++ +L+        L  A+ + + M +  R V   +R  ++    
Sbjct: 481 ILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMED--RGVSPKVRIYNMLIDG 538

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             ++G  +D           +   S E  +L K    N   Y TL+ G    G++S+   
Sbjct: 539 CCSKGKIED-----------AFRFSKE--MLKKGIELNLVTYNTLIDGLSMTGKLSEAED 585

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  + R+      PD  TY +++S    AG++ R   +  EM R G+     TY++L+ 
Sbjct: 586 LLLEISRK---GLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI- 641

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C +  I+  + L  EM+    ++PD++ YN ++  + +  D   A     +M  + I 
Sbjct: 642 SLCTKEGIELTERLFGEMS----LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIG 697

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             K +Y +L+       +      + DEM  R+   + D   +N++V+G+C +     A 
Sbjct: 698 LDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEAD--TYNIIVKGHCEVKDYMSAY 755

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
                M+E GF  +V     L +G+    +  EA ++  E+  R
Sbjct: 756 VWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGR 799



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 168/408 (41%), Gaps = 58/408 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V+ ++ ++      G     E  K FD++    ++  D    + + P+  +Y  +
Sbjct: 454 GVSPSVETYNILIG-----GYGRKYEFDKCFDIL----KEMED----NGTMPNVVSYGTL 500

Query: 65  LNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           +N    L K  K L+   +   M + G  P V  YN++I  C    +        + +L+
Sbjct: 501 INC---LCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLK 557

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAE-TIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            GI L + T+ +L+      G L  AE  +++  R+G +         D+  Y+S   G 
Sbjct: 558 KGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKP--------DVFTYNSLISGY 609

Query: 181 DDDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               +      ++E++  + I P+              + Y  L+     EG +  T R+
Sbjct: 610 GFAGNVQRCIALYEEMKRSGIKPTL-------------KTYHLLISLCTKEG-IELTERL 655

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G M  +      PD + Y  V+      G M++A  +  +M    +  ++ TYN L+ G
Sbjct: 656 FGEMSLK------PDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILG 709

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +  ++ + + L+ EM +  ++EP+  +YNI++ G   + D   A  ++ EM+ +G   
Sbjct: 710 QLKVGKLCEVRSLIDEM-NAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLL 768

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDE----MLRDPRVKVDIVAWNML 399
                  L+       + K A  V  E    ML D  V  D+ A   L
Sbjct: 769 DVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDVTVDEDLSATEKL 816



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/355 (20%), Positives = 143/355 (40%), Gaps = 36/355 (10%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           +G +P+V ++ T+++ L            KL +  + + R   D  +     P    YN 
Sbjct: 488 NGTMPNVVSYGTLINCLCKGS--------KLLEAQIVK-RDMEDRGV----SPKVRIYNM 534

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++ C + GK +   +   +M + G + +++TYN +I   +   +      +L  I   G
Sbjct: 535 LIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +   + T+ SL++ Y   G+++    + + M+  R  +   ++   L       EG    
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMK--RSGIKPTLKTYHLLISLCTKEGI--- 649

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             E+ E+L                +  P+  +Y  ++  Y   G   D  +     ++  
Sbjct: 650 --ELTERLFGE------------MSLKPDLLVYNGVLHCYAVHG---DMEKAFNLQKQMI 692

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           + +   D  TY +++   +K G +   R ++ EM    +     TYNI++KG+C+     
Sbjct: 693 EKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYM 752

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
            A    REM +   +  DV   N L+ G      S  A    +EM  R +    +
Sbjct: 753 SAYVWYREMQEKGFL-LDVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDVTV 806



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML+ G   ++  ++T++  L+ +G     E     D++++  RK          KPD   
Sbjct: 555 MLKKGIELNLVTYNTLIDGLSMTGKLSEAE-----DLLLEISRK--------GLKPDVFT 601

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G  ++ + L+++M   G KP + TY+++I LC +       + + ER+ 
Sbjct: 602 YNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG-----IELTERLF 656

Query: 121 -EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
            EM +   +  +  ++  Y   GD+E A  + + M E
Sbjct: 657 GEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIE 693


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 194/412 (47%), Gaps = 25/412 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  ++  ++ AC N+G+  +  +  + M E G   D  T  ++I    +    + +V  
Sbjct: 222 PDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGY 281

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
             +++EMG+   +  F +L+      G ++ A  +++ M R G +    +     L D  
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKP--NVYTHTTLIDGL 339

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            + +G  +    +F KL+ +              + PN   YT ++ GY  E +++    
Sbjct: 340 CK-KGWTEKAFRLFLKLVRSD------------GYKPNVHTYTAMINGYCKEDKLNRAEM 386

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M+ Q      P+  TYTT++    K G+  RA +++  M + G   N  TYN ++ 
Sbjct: 387 LLSRMQEQ---GLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C++  +D+A  LL +++    ++ D V+Y IL+       D+  +L FFN+M   G  
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHG-LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFT 502

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   SYTTL+  F    Q K + ++F+E +    +       +M+  GYCR G    A +
Sbjct: 503 PDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMIC-GYCRYGNTSLAVK 561

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----CEVKK 462
           + +RM  +G  P+  TYG+L +G+    K  +A  L+  + ++    CEV +
Sbjct: 562 LFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTR 613



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 188/465 (40%), Gaps = 50/465 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVK-LFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+  G  P+V  ++ +++ L   G      S+K  F+++ + VR+          KP+  
Sbjct: 285 MVEMGLAPNVINFTALINGLCKQG------SIKQAFELLEEMVRR--------GWKPNVY 330

Query: 60  AYNAVLNACANLGKPKKFLQLFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
            +  +++     G  +K  +LF ++    G KP+V TY  MI    +  + +    +L R
Sbjct: 331 THTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSR 390

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSEN 177
           + E G+     T+ +L+  +   G+   A  ++  M +EG           ++  Y++  
Sbjct: 391 MQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSP--------NIYTYNAII 442

Query: 178 EG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +G       DE +  L   S++              +   YT LM  +    R +DT R 
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHG----------LQADGVTYTILMSVHC---RQADTNRS 489

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    +       PD  +YTT++S   +   M  + ++  E   +G+   + TY  ++ G
Sbjct: 490 LVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICG 549

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+      A +L + M++     PD ++Y  LI G         A   ++ M  +G++P
Sbjct: 550 YCRYGNTSLAVKLFQRMSNHG-CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSP 608

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            +++  TL   +        A  V D + +   ++      N LV   C  G ++ A   
Sbjct: 609 CEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIR----TVNTLVRKLCSEGKLDMAALF 664

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CE 459
             ++ +     N  T     N    + K G    L  E+ ER CE
Sbjct: 665 FHKLLDKEPNVNRVTLLGFMNKCYESNKYG----LVSELSERICE 705



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 119/274 (43%), Gaps = 22/274 (8%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           +V    + G +  A  ++ EM   G+  +  T N +L        ++ A+ +  EM    
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            + PD VS+ +++     +     A  + N M  RG      + T ++ AF    Q    
Sbjct: 220 -VSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFC---QKGYV 275

Query: 377 NKVFDEMLRDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           N+V     +   + +  +++ +  L+ G C+ G +++A  ++E M   G+ PNV T+ +L
Sbjct: 276 NRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTL 335

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            +G+    K G     W E   R  +K   V +D       KP+     A+ +   +   
Sbjct: 336 IDGLC---KKG-----WTEKAFRLFLKL--VRSDG-----YKPNVHTYTAMINGYCKEDK 380

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
             +A  +++ M+E G+ PN   Y  + ++ H ++
Sbjct: 381 LNRAEMLLSRMQEQGLVPNTNTYTTL-IDGHCKV 413


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 173/447 (38%), Gaps = 68/447 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+V  ++TV+  L  +              VV R        I    KPD   
Sbjct: 229 MMDRGIQPNVVTYTTVIDGLCKAQ-------------VVDRAEGVFQQMIDKGVKPDNDT 275

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++   ++GK K+ +++ ++M   G KPD  TY  ++       R     F  + ++
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMI 335

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   +  +  L+  Y   G L     ++  M E                        
Sbjct: 336 RKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVE------------------------ 371

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                        +P+  I+  +   Y  +  + + + +   M+
Sbjct: 372 --------------------------NGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK 405

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q      PD V +  ++ AL K G +D A     +M   GV  N   +N L+ G C   
Sbjct: 406 QQ---GLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVD 462

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           + +KAKE   EM +   I PDVV +N ++           A    + M   G  P  ISY
Sbjct: 463 KWEKAKEFYFEMLNQG-IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISY 521

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTL+    L  +   A K  D ML    +K D   +N L+ GYCR G +++A  +   M 
Sbjct: 522 TTLIGGHCLVGRIDEAAKSLDVML-SVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREML 580

Query: 421 ENGFYPNVATYGSLANGISLARKPGEA 447
            NG  P V TY ++ +G+   R+  EA
Sbjct: 581 RNGITPGVVTYSTILHGLFTTRRFSEA 607



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 192/449 (42%), Gaps = 48/449 (10%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRK-------HLLVFVLERILE---MGITLC 127
           L+LFD +        ++ +N ++   +R S +        L+V +  R++    + +T  
Sbjct: 34  LKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTPD 93

Query: 128 MTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIREL--DLEDYSSENEGDDDDD 184
           + T+  L+  +   G LE    T    ++ G R    +I +L   L D     E  D   
Sbjct: 94  LCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMD--- 150

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             +  K +P       E    P   +     Y TL+KG+ NE R  + + +L  M   + 
Sbjct: 151 --ILIKRMP-------ELGCTPDVVS-----YNTLLKGFCNEKRAEEALELLHMMADSQG 196

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
            +  P+ V+Y TV++     G +D+A  +  EM   G+  N +TY  ++ G C+   +D+
Sbjct: 197 RSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDR 256

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A+ + ++M D   ++PD  +YN LI G++ I      +    EM A G+ P   +Y +L+
Sbjct: 257 AEGVFQQMIDKG-VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLL 315

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                + + + A   FD M+R   +K ++  + +L+ GY   G + E   ++  M ENG 
Sbjct: 316 NYLCNNGRCREARFFFDSMIRKG-IKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGL 374

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            P+   +  +    +      EA+ ++ ++K++                 L PD     A
Sbjct: 375 SPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ----------------GLSPDVVNFGA 418

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPN 513
           L D   +      A+     M   G+ PN
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPN 447



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/549 (21%), Positives = 223/549 (40%), Gaps = 96/549 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   Y+ ++     +G+ +     F  + + G + + +  N ++K LC     +  +  
Sbjct: 92  PDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDI 151

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++R+ E+G T  + ++ +L+  +      E A  ++  M + +   C      ++  Y+
Sbjct: 152 LIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPP----NVVSYA 207

Query: 175 SE-----NEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPK 207
           +       EG  D    +F +++   I P+                          ++ K
Sbjct: 208 TVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK 267

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKA 264
              P++  Y  L+ GY++ G+  + VRML      E+ ++H   PD  TY ++++ L   
Sbjct: 268 GVKPDNDTYNCLIHGYLSIGKWKEVVRML------EEMSAHGLKPDCYTYGSLLNYLCNN 321

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-------- 316
           G    AR     M R G+  N   Y IL+ GY  +  + +  +LL  M ++         
Sbjct: 322 GRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIF 381

Query: 317 --------------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
                                      + PDVV++  LID    +     A+  FN+M  
Sbjct: 382 NIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMN 441

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G+AP    + +L+       + + A + + EML +  ++ D+V +N ++   C  G V 
Sbjct: 442 EGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEML-NQGIRPDVVFFNTILCNLCTKGQVM 500

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A+R+I+ M+  G  P+V +Y +L  G  L  +  EA                  + D  
Sbjct: 501 KAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEA----------------AKSLDVM 544

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
           L   LKPDE   + L     RA     A  +   M  +GI P    Y  I   +H  +FT
Sbjct: 545 LSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI---LHG-LFT 600

Query: 531 SKHASQARQ 539
           ++  S+A++
Sbjct: 601 TRRFSEAKE 609



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 173/404 (42%), Gaps = 25/404 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y ++LN   N G+ ++    FD M   G KP+V  Y ++I   A       +  
Sbjct: 305 KPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHD 364

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VC 162
           +L  ++E G++     F  +  AY     ++ A  I   M++                +C
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALC 424

Query: 163 KIIRELD--LEDYSSENEGDDDD----DDEVFEKLLPNSINPSSEP--PLLPKTFAPNSR 214
           K+ R  D  L+     NEG   +    +  V+     +    + E    +L +   P+  
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            + T++     +G+V    R++  M R     + PD ++YTT++      G +D A + L
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERV---GTRPDVISYTTLIGGHCLVGRIDEAAKSL 541

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M  +G+  +  TYN LL GYC+  +ID A  + REM  +  I P VV+Y+ ++ G   
Sbjct: 542 DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG-ITPGVVTYSTILHGLFT 600

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
               + A   +  M   G       Y  ++   + ++    A K+F + L     +++I 
Sbjct: 601 TRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLF-QSLCSKDFQLEIT 659

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            +N+++    + G  E+A  +   +   G  P+V TY  +A  +
Sbjct: 660 TFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENL 703



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 124/300 (41%), Gaps = 39/300 (13%)

Query: 257 VVSALVKAGSM--DRARQVLAEMTRIGVPANRITYNILLKGYCQ-----------QLQID 303
           V+ +  ++GS+  D A ++   +     PA+ I +N LL    +           +L + 
Sbjct: 18  VIGSRARSGSLGLDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVS 77

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
               ++RE     K+ PD+ +Y+ILI  F  +         F  +   G     I    L
Sbjct: 78  LFNRMIRECT--IKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQL 135

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN- 422
           +K    + + + A  +  + + +     D+V++N L++G+C     EEA  ++  M ++ 
Sbjct: 136 LKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQ 195

Query: 423 --GFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CEV---- 460
                PNV +Y ++ NG     +  +A  L+ E+ +R                C+     
Sbjct: 196 GRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVD 255

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + EGV     +   +KPD +  + L    +    +++ + ++  M  HG+ P+   Y  +
Sbjct: 256 RAEGV-FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSL 314


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 210/495 (42%), Gaps = 57/495 (11%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           ++  P+  ++N V+ A   LG   + +++F +M     +PDV TY  ++    +  R   
Sbjct: 182 TNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDE 241

Query: 112 LVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCK 163
            V +L+   EM I  C     TF  L+      GD+     +V  M              
Sbjct: 242 AVLLLD---EMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNT 298

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           II  L L+       G  D    + ++++ +                PN   Y TL+ G 
Sbjct: 299 IINGLCLK-------GKLDKAVSLLDRMVASKC-------------VPNDVTYGTLINGL 338

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
           + +GR  D V +L ++   E+   H +   Y+T++S L K    + A  +  +M   G  
Sbjct: 339 VKQGRSVDGVHLLSSL---EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQ 395

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N + Y+ L+ G C++ ++D+AKE+L EM +     P+  +Y+ LI GF    +S  A+ 
Sbjct: 396 PNIVVYSALIDGLCREGKLDEAKEILCEMVNKG-CTPNAFTYSSLIKGFFKTGNSQKAIR 454

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
            + EM      P +I Y+ L+       + + A  ++  ML    ++ D+VA++ ++ G 
Sbjct: 455 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHML-GRGLRPDVVAYSSMIHGL 513

Query: 404 CRMGLVEEAKRIIERM--KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           C  G VE   ++   M  +E+   P+V TY  L   +        A+ L   + +R    
Sbjct: 514 CNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR---- 569

Query: 462 KEGVNAD------------SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
             G N D              L PP +   E LD L     +      A +I+  M +  
Sbjct: 570 --GCNPDLITCNIFLNALREKLNPP-QDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKF 626

Query: 510 IPPNKTKYKKIYVEM 524
           +PPN + +++I  E+
Sbjct: 627 LPPNASTWERIIPEL 641



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/429 (21%), Positives = 167/429 (38%), Gaps = 49/429 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P    ++ +++ L   GD             + RV K  D   +    P+   YN +
Sbjct: 253 GCFPSSVTFNVLINGLCKKGD-------------MVRVTKLVDNMFLKGCVPNEVTYNTI 299

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     GK  K + L D+M      P+ +TY  +I    +  R    V +L  + E G 
Sbjct: 300 INGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH 359

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                 + +L++        E A  + + M E       ++    ++      EG  D+ 
Sbjct: 360 HANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLC--REGKLDEA 417

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
            E+  +             ++ K   PN+  Y++L+KG+   G     +R+   M +   
Sbjct: 418 KEILCE-------------MVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK--- 461

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N   P+ + Y+ ++  L + G +  A  +   M   G+  + + Y+ ++ G C    ++ 
Sbjct: 462 NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEV 521

Query: 305 AKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
             +L  EM   ++  +PDVV+YNIL+      +  + A+   N M  RG  P  I+    
Sbjct: 522 GLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIF 581

Query: 364 MKAFALSSQPKLANKVF-DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           + A      P    + F DE++     +  IV                 A +IIE M + 
Sbjct: 582 LNALREKLNPPQDGREFLDELVVRLHKRQRIVG----------------AAKIIEVMLQK 625

Query: 423 GFYPNVATY 431
              PN +T+
Sbjct: 626 FLPPNASTW 634



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 107/254 (42%), Gaps = 7/254 (2%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           ++      + +L++ Y N G      ++   M+R+       +   +  V  A  KA   
Sbjct: 75  SYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKN---FILVFRAYGKAHLP 131

Query: 268 DRARQVLAEMT-RIGVPANRITYNILLKGYCQQLQIDKAKELLR-EMADDAKIEPDVVSY 325
           ++A ++   M           ++N +L    Q+    +A E     +     I P+V+S+
Sbjct: 132 EKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSF 191

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N++I     +     A+  F EM  +   P   +Y TLM       +   A  + DEM  
Sbjct: 192 NLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQI 251

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           +       V +N+L+ G C+ G +    ++++ M   G  PN  TY ++ NG+ L  K  
Sbjct: 252 EGCFPSS-VTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLD 310

Query: 446 EAL-LLWKEIKERC 458
           +A+ LL + +  +C
Sbjct: 311 KAVSLLDRMVASKC 324



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G  P V A+S+++  L  +G    VE  +KLF+ ++ +          SDS+PD  
Sbjct: 494 MLGRGLRPDVVAYSSMIHGLCNAGS---VEVGLKLFNEMLCQE---------SDSQPDVV 541

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
            YN +L A          + L + M + G  PD++T N+ +
Sbjct: 542 TYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFL 582


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 130/611 (21%), Positives = 240/611 (39%), Gaps = 127/611 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G++P   A S++V  L   G     + V  FD+V  RV+K         + P    
Sbjct: 322 MIELGFVPTEAALSSLVEGLRRKG-----KVVDAFDLV-NRVKKVG-------AMPSLFV 368

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N+    GK  +   LF +M E G   + +TY+++I    R  +    +  L +++
Sbjct: 369 YNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMI 428

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI + +  + SL+  +   G+L  A +    M +       +     +  Y   N+G 
Sbjct: 429 MAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYC--NKGK 486

Query: 181 DDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTT 218
             +   ++ ++    I P++                         +L +   PN   Y  
Sbjct: 487 LHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNV 546

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           +++G+  EG   +TV+    + +       PD  TY  ++S+L   G +  A++ + ++ 
Sbjct: 547 MIEGHCKEG---NTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLH 603

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMA------------------------- 313
           R     N + Y+ LL GYC++ ++  A  + REM                          
Sbjct: 604 REHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTS 663

Query: 314 ---------DDAKIEPDVVSYNILIDGF--------------ILIDDSAGA-----LTFF 345
                     D ++ PD V Y  +IDG+              I+ID+          T  
Sbjct: 664 AVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLI 723

Query: 346 NEMRARGI----------------APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           NE+   G+                 P  ++Y   +   A     + A ++ ++ML+   +
Sbjct: 724 NELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKG--L 781

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             + V++N+LV G+C++G VEEA ++++ M +N  +P+  TY ++            A+ 
Sbjct: 782 LANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIE 841

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            W                D+ L   LKPD    + L   C  A    KA E+   M   G
Sbjct: 842 FW----------------DTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRG 885

Query: 510 IPPNKTKYKKI 520
           + PN+  +K +
Sbjct: 886 VKPNQATHKSL 896



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 186/414 (44%), Gaps = 46/414 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  +  +++A     +     +LFD+M E    P+ +TYNVMI+   +         +
Sbjct: 504 PNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFEL 563

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFG---------------DLEIAETIVQAM-----R 155
           L ++++ G+     T++ L+++    G                 ++ E    A+     +
Sbjct: 564 LNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCK 623

Query: 156 EGR-RDVCKIIREL-------DLEDYSSENEGD--DDDDDEVFEKLLPNSINPSSEPPLL 205
           EGR RD   + RE+       DL  Y+   +G   + D   VF  LL N         + 
Sbjct: 624 EGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVF-GLLKN---------MH 673

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            +   P+  IYT+++ GY   G V    +  G      D    P+ VTYTT+++ L KAG
Sbjct: 674 DQRLRPDKVIYTSMIDGYSKAGSVK---KAFGIWDIMIDEGCTPNIVTYTTLINELCKAG 730

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            MD+A  +  EM       N +TY   L    ++  ++KA +L  +M     +  + VSY
Sbjct: 731 LMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKG--LLANTVSY 788

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           NIL+ GF  +     A    +EM    I P  I+Y+T++           A + +D ML 
Sbjct: 789 NILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTML- 847

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           +  +K D +A+N L+ G C  G + +A  + + M   G  PN AT+ SL++G S
Sbjct: 848 NKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGAS 901



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 116/539 (21%), Positives = 210/539 (38%), Gaps = 106/539 (19%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   Y AV+ +   L    K  ++  +M    +  +V+ YNV+I    +  R    V 
Sbjct: 225 RPDIYIYVAVIRSFCELKNFAKAKEMIQRMES--SDLNVVVYNVLIHGLCKNKRVWEAVE 282

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIA---------------ETIVQAMREGRR 159
           +   +++ G+T    T+ +LV       + E+                E  + ++ EG R
Sbjct: 283 IKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLR 342

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
              K++   DL                         +N   +   +P  F  N+ I +  
Sbjct: 343 RKGKVVDAFDL-------------------------VNRVKKVGAMPSLFVYNALINSLC 377

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
             G  +E  +          +   +     + VTY+ ++ +  + G +D A   L +M  
Sbjct: 378 KDGKFDEAEL--------LFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIM 429

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G+      YN L+ G+C+   +  A     EM D   ++P VVSY  LI G+       
Sbjct: 430 AGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKG-LKPTVVSYTSLISGYCNKGKLH 488

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A   ++EM  +GIAP   ++TTL+ A   +++   A ++FDEML    +  + V +N++
Sbjct: 489 EAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNE-VTYNVM 547

Query: 400 VEGYCR-----------------------------------MGLVEEAKRIIERMKENGF 424
           +EG+C+                                    G V EAK+ I+ +    F
Sbjct: 548 IEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHF 607

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKER-------C-------EVKKEGVNADSD 470
             N   Y +L +G     +  +AL + +E+ +R       C        +K++  +A   
Sbjct: 608 KLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFG 667

Query: 471 L-----PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
           L        L+PD+ +  ++ D   +A   +KA  I   M + G  PN   Y  +  E+
Sbjct: 668 LLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINEL 726



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 130/275 (47%), Gaps = 17/275 (6%)

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           D  EVFE LL              K    +S  +  L++ Y+ E R+ D+V +   MR+ 
Sbjct: 138 DPREVFEALLD----------CFEKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQC 187

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E     P   T   V++ L K   +D    +  E+  +G+  +   Y  +++ +C+    
Sbjct: 188 E---LMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNF 244

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            KAKE+++ M      + +VV YN+LI G         A+   N +  +G+  ++++Y T
Sbjct: 245 AKAKEMIQRMESS---DLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCT 301

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+       + ++   V DEM+    V  +  A + LVEG  R G V +A  ++ R+K+ 
Sbjct: 302 LVLGLCKVQEFEVGAGVMDEMIELGFVPTE-AALSSLVEGLRRKGKVVDAFDLVNRVKKV 360

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G  P++  Y +L N +    K  EA LL+KE+ E+
Sbjct: 361 GAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEK 395


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 204/467 (43%), Gaps = 73/467 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G  P  +++  +V        +G VE V   D ++  + ++           D A 
Sbjct: 172 MTRAGVCPDERSFRALV---VVCCREGKVEEV---DALLAAMWRYG-------FSLDNAT 218

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
              V+ +    G+ K   + F +M E G  P+V+ Y   I  LC R   K     VLE +
Sbjct: 219 CTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAF-HVLEEM 277

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +  G+   + T  +L+                         +CKI              G
Sbjct: 278 VGRGLKPNVYTHTTLIDG-----------------------LCKI--------------G 300

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +    +F KL+ +S            ++ PN   YT ++ GY  EG+++    +L  M
Sbjct: 301 WTERAFRLFLKLIKSS------------SYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 348

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             Q      P+  TYTT++    K GS DRA +++ +M + G   N  TYN ++ G+C++
Sbjct: 349 VEQ---GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKK 405

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +I +A ++LR MA    ++ D ++Y ILI           AL  F+ M   G  P   +
Sbjct: 406 GKIQEAYKVLR-MATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEA 464

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT+L+  +    Q + + K FD+ L    +      +  ++ GYC++G    A R+ ERM
Sbjct: 465 YTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK-QTYTSMIAGYCKVGRSTLALRVFERM 523

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----CEVKK 462
            +NG + +  TYG+L +G+    +  EA  L++ + ++    CEV +
Sbjct: 524 VQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTR 570



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/462 (21%), Positives = 179/462 (38%), Gaps = 68/462 (14%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           K V +F    + + + P+   Y A ++        K+   + ++M   G KP+V T+  +
Sbjct: 233 KDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTL 292

Query: 100 I-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           I  LC     +      L+ I        + T+  ++  Y   G L  AE ++  M E  
Sbjct: 293 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVE-- 350

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                                                           +   PN+  YTT
Sbjct: 351 ------------------------------------------------QGLKPNTNTYTT 362

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G+   G       ++  M+++      P+  TY  V+    K G +  A +VL   T
Sbjct: 363 LIGGHCKGGSFDRAFELMNKMKQE---GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMAT 419

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+  ++ITY IL+  +C+Q  I  A +L   M ++    PD+ +Y  LI  +      
Sbjct: 420 SQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCC-PDIEAYTSLISTYCQQRQM 478

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             +  FF++    G+ PTK +YT+++  +    +  LA +VF+ M+++     D + +  
Sbjct: 479 EESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNG-CFADSITYGA 537

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           L+ G C+   +EEAK + E M +    P   T  +L        K   A+ +   + +R 
Sbjct: 538 LISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ 597

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
           +V    V                L AL D+   + F +K L+
Sbjct: 598 QVHTVDVVVRK------------LSALGDVDAASLFLKKVLD 627



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/437 (19%), Positives = 170/437 (38%), Gaps = 72/437 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+V   +T++  L   G      + + F + +K ++        S  KP+   
Sbjct: 277 MVGRGLKPNVYTHTTLIDGLCKIG-----WTERAFRLFLKLIKS-------SSYKPNVHT 324

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++      GK  +   L  +M E G KP+  TY  +I    +         ++ ++ 
Sbjct: 325 YTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMK 384

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + T+ +++  +   G ++ A  +++          KI   + + ++    +G 
Sbjct: 385 QEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC--KQGH 442

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG-RVSDTVRMLGAM 239
                ++F++++ N   P  E        A  S I T   +  M E  +  D   M+G +
Sbjct: 443 ITYALDLFDRMVENGCCPDIE--------AYTSLISTYCQQRQMEESQKFFDKCLMIGLL 494

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                    P   TYT++++   K G    A +V   M + G  A+ ITY  L+ G C++
Sbjct: 495 ---------PTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKE 545

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++++AK L   M D                                    + + P +++
Sbjct: 546 SRLEEAKALYEGMLD------------------------------------KRLVPCEVT 569

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
             TL   +    +  +A  V D +  D R +V  V  +++V     +G V+ A   ++++
Sbjct: 570 RVTLTFEYCRREKTSIAVSVLDRL--DKRQQVHTV--DVVVRKLSALGDVDAASLFLKKV 625

Query: 420 KENGFYPNVATYGSLAN 436
            +  +  + ATY    N
Sbjct: 626 LDEDYAVDHATYTGFIN 642



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 119/335 (35%), Gaps = 78/335 (23%)

Query: 246 ASHPD----HVTYTTVVSALVKAGSMDRARQVL--------------------AEMTRIG 281
           AS PD       Y T  +A V  GS+  A +V+                     EM   G
Sbjct: 82  ASRPDLRRLMRLYVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHG 141

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI------------ 329
           +P    T N +L+   +      A+++   M   A + PD  S+  L+            
Sbjct: 142 LPLCVETANWVLRVGLETGSFVYARKVFDGMT-RAGVCPDERSFRALVVVCCREGKVEEV 200

Query: 330 ---------DGFILIDDSAGALT--------------FFNEMRARGIAPTKISYTTLMKA 366
                     GF L + +   +               FF  M   G  P  ++YT  +  
Sbjct: 201 DALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDG 260

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI-IERMKENGFY 425
                  K A  V +EM+    +K ++     L++G C++G  E A R+ ++ +K + + 
Sbjct: 261 LCKRRYVKQAFHVLEEMV-GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYK 319

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           PNV TY  +  G     K   A +L   + E+                 LKP+      L
Sbjct: 320 PNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ----------------GLKPNTNTYTTL 363

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                +   F +A E++  M++ G  PN   Y  +
Sbjct: 364 IGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAV 398


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 131/248 (52%), Gaps = 5/248 (2%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   PN  +Y T+M G    G    T+ +L   R  E   + PD  TY+ V+ AL K  +
Sbjct: 162 KICEPNEVMYGTVMNGLSKRGHTEKTLSLL---RIMEQGNTKPDVRTYSIVIDALCKDIN 218

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A  +L EM +  +P N  TYN L+ G C+  Q +K K LL EM  +  I P+V +++
Sbjct: 219 LDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMV-NLNINPNVHTFS 277

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILIDG         A      M  +G+ P  I+Y+ +M  + L  Q   A +VF+ +LRD
Sbjct: 278 ILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFN-VLRD 336

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +K +I ++++L+ GYC+   + +A ++   + + G  P+  TY ++ +G+    + G+
Sbjct: 337 KGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGD 396

Query: 447 ALLLWKEI 454
           A  ++ E+
Sbjct: 397 AKKIFDEM 404



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/489 (23%), Positives = 208/489 (42%), Gaps = 48/489 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +     N+      + LF +M   G        N++        R      V
Sbjct: 60  PSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSV 119

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------IIRE 167
           L   L+ GI   + TF +L+     F + ++ + +V   +  R  +C+        ++  
Sbjct: 120 LPIYLKTGIPFNVVTFNTLLGGL--FAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNG 177

Query: 168 LDLEDYSSEN--------EGDDDDDDEVFEKL---LPNSINPSSEPPLL----PKTFAPN 212
           L    ++ +         +G+   D   +  +   L   IN  +   LL     K   PN
Sbjct: 178 LSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPN 237

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y +L+ G    G+      +L  M     N   P+  T++ ++  L K G ++ A +
Sbjct: 238 IFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNIN---PNVHTFSILIDGLCKEGKVEDADE 294

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V+  M   GV  + ITY+ ++ GYC + Q+D+A+ +   + D   I+P++ SY+ILI+G+
Sbjct: 295 VMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKG-IKPNIFSYSILINGY 353

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
               + A A+  F E+  +G+ P  ++Y+T++       +   A K+FDEMLR      D
Sbjct: 354 CKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTP-D 412

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           I   + L+ GY + GLVEEA  +  +++ N    N++ Y  + NG+    +  EA  +++
Sbjct: 413 ICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFE 472

Query: 453 EIKERCEVKKEGVNADSDLPP-PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           +                 LP   L PD    + +     R   F +   I+  ME++G P
Sbjct: 473 K-----------------LPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCP 515

Query: 512 PNKTKYKKI 520
            N   Y  I
Sbjct: 516 ANNITYNVI 524



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 205/493 (41%), Gaps = 106/493 (21%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L++G   +V  ++T++  L A  ++   ++V LF  +V+              +P+   Y
Sbjct: 124 LKTGIPFNVVTFNTLLGGLFA--ENKVTDAVVLFKKLVRE----------KICEPNEVMY 171

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
             V+N  +  G  +K L L   M +   KPDV TY+++I    +       + +L  + +
Sbjct: 172 GTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQ 231

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
             I   + T+ SL+      G  E  +T++                              
Sbjct: 232 KNIPPNIFTYNSLIDGLCKLGQWEKVKTLLS----------------------------- 262

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                   +++  +INP             N   ++ L+ G   EG+V D   +   MR 
Sbjct: 263 --------EMVNLNINP-------------NVHTFSILIDGLCKEGKVEDADEV---MRH 298

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             +    PD +TY+ ++      G +DRAR+V   +   G+  N  +Y+IL+ GYC++  
Sbjct: 299 MIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKN 358

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP------ 355
           + KA +L  E++    ++PD V+Y+ ++ G I +     A   F+EM   G  P      
Sbjct: 359 LAKAMQLFGEISQKG-LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHS 417

Query: 356 ----------------------------TKIS-YTTLMKAFALSSQPKLANKVFDEMLRD 386
                                       T IS YT ++     + + + A+ +F+++   
Sbjct: 418 TLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKL--- 474

Query: 387 PRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           P + +  D+  +N+++ G+CR GL +E K I+ +M++NG   N  TY  +  G   + K 
Sbjct: 475 PSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKI 534

Query: 445 GEALLLWKEIKER 457
            E +   KE+  R
Sbjct: 535 SEIVSFMKEMAGR 547



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 28/244 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+  +Y+ ++N         K +QLF ++ + G KPD +TY+ ++       R      
Sbjct: 340 KPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKK 399

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + +L +G T  +    +L+  Y  +G +E A  +   +   R D        ++  Y+
Sbjct: 400 IFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDT-------NISFYT 452

Query: 175 SENEGDDDDD-----DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
               G   +D       +FEKL      PS           P+ R Y  ++ G+  EG +
Sbjct: 453 VVINGLCKNDRVREAHAIFEKL------PSI-------GLIPDVRTYNVMITGFCREG-L 498

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D V+  G +R+ EDN    +++TY  ++    ++  +      + EM   G   +  T 
Sbjct: 499 FDEVK--GILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTT 556

Query: 290 NILL 293
            +L+
Sbjct: 557 GVLI 560


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 184/402 (45%), Gaps = 20/402 (4%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   +N V++     G+  +   LF +M   G  PDV+TYN +I    +      +  +
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  + + G    + T+ +L+  +  FG +E A +    M+  R  V   +  L     + 
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMK--RLGVMANVVTLSTFVDAF 314

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +  ++F +             +  +   PN   YT+L+ G    GR+ D + +
Sbjct: 315 CKEGLVREAMKLFAQ-------------MRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVL 361

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  Q      P+ VTYT +V  L K G +  A  VL+ M R GV AN + Y  L+ G
Sbjct: 362 LDEMVHQ---GLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHG 418

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +      ++A +LL EM +   +E DV  Y  LI G   +     A +  ++M   G+ P
Sbjct: 419 HFMNKNSERALDLLNEMKNKG-MELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRP 477

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             + YTT+M AF  + +   A  +  + + D  ++ ++V +  L++G C+ G + EA   
Sbjct: 478 NTVIYTTIMDAFFKAGKESEAVALLHK-IPDSGLQPNVVTYCALIDGLCKAGSIYEAISH 536

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            ++M+E G  PNV  Y +L +G        +A+ L  E+ ++
Sbjct: 537 FDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDK 578



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 122/520 (23%), Positives = 207/520 (39%), Gaps = 98/520 (18%)

Query: 8   PHVKA----WSTVVSRLAASGDDGPVESVKLFDVVVK---RVRKFSDPDIVSDSKPDTAA 60
           PH  A    + T++S LA  G         L D  V+   RVR+   P       P+T  
Sbjct: 127 PHRSALPSVFDTLLSLLADHG---------LLDDAVRALARVRQLRVP-------PNTRT 170

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N +L   A   +     +LF+ +      P+V T+N++I    +         +  R+ 
Sbjct: 171 CNHILLRLARNRQGGLVRRLFEHL----PAPNVFTFNIVIDFLCKQGELVEARALFVRMK 226

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            MG +  + T+ SL+  Y   G+LE  E +V  MR+                        
Sbjct: 227 AMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRK------------------------ 262

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                        A +   Y  L+  +   G +       G M+
Sbjct: 263 --------------------------SGCAADVVTYNALINCFSKFGWIEKAYSYFGEMK 296

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R    A   + VT +T V A  K G +  A ++ A+M   G+  N  TY  L+ G C+  
Sbjct: 297 RLGVMA---NVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 353

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D A  LL EM     + P+VV+Y +++DG       A A    + M   G+   ++ Y
Sbjct: 354 RLDDAIVLLDEMVHQGLV-PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLY 412

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTL+    ++   + A  + +EM ++  +++D+  +  L+ G C++  ++EAK ++ +M 
Sbjct: 413 TTLIHGHFMNKNSERALDLLNEM-KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMD 471

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  PN   Y ++ +    A K  EA+ L  +I             DS L P +     
Sbjct: 472 DCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIP------------DSGLQPNVVTYCA 519

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L+D L     +A    +A+     M E G+ PN   Y  +
Sbjct: 520 LIDGLC----KAGSIYEAISHFDKMRELGLDPNVQVYTTL 555



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 178/426 (41%), Gaps = 43/426 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M R G + +V   ST V    A   +G V E++KLF  +  RVR            P+  
Sbjct: 295 MKRLGVMANVVTLSTFVD---AFCKEGLVREAMKLFAQM--RVRGM---------MPNEF 340

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y ++++     G+    + L D+M   G  P+V+TY VM+    +  +  +   VL  +
Sbjct: 341 TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLM 400

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G+      + +L+  +    + E A  ++  M+           ELD+  Y +   G
Sbjct: 401 ERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGM-------ELDVSLYGTLIWG 453

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKT----FAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                       L           LL K       PN+ IYTT+M  +   G+ S+ V +
Sbjct: 454 ------------LCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVAL 501

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    +  D+   P+ VTY  ++  L KAGS+  A     +M  +G+  N   Y  L+ G
Sbjct: 502 L---HKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDG 558

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+   + KA  L+ EM D   +  D V Y  LIDG +   D  GA     +M   G+  
Sbjct: 559 FCKIGSLSKAVHLMNEMVDKG-MSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQL 617

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
               YT  +  F   +  + A  V  EM+    +  D  A+N L+  Y ++G +EEA  +
Sbjct: 618 DLYCYTCFISGFCNMNMMQEARGVLSEMI-GTGITPDKTAYNCLIRKYQKLGNMEEASSL 676

Query: 416 IERMKE 421
              M+ 
Sbjct: 677 QNEMES 682



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 31/324 (9%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           ++ TL+    + G + D VR L  +R+       P+  T   ++  L +       R++ 
Sbjct: 135 VFDTLLSLLADHGLLDDAVRALARVRQLR---VPPNTRTCNHILLRLARNRQGGLVRRLF 191

Query: 275 AEMTRIGVPA-NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             +     PA N  T+NI++   C+Q ++ +A+ L   M       PDVV+YN LIDG+ 
Sbjct: 192 EHL-----PAPNVFTFNIVIDFLCKQGELVEARALFVRM-KAMGCSPDVVTYNSLIDGYG 245

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
              +        +EMR  G A   ++Y  L+  F+     + A   F EM R   V  ++
Sbjct: 246 KCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKR-LGVMANV 304

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V  +  V+ +C+ GLV EA ++  +M+  G  PN  TY SL +G   A +  +A++L  E
Sbjct: 305 VTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDE 364

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +  +                 L P+      + D   +      A ++++ ME  G+  N
Sbjct: 365 MVHQ----------------GLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKAN 408

Query: 514 KTKYKKIYVEMHSRMFTSKHASQA 537
           +  Y  +   +H   F +K++ +A
Sbjct: 409 ELLYTTL---IHGH-FMNKNSERA 428


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 127/535 (23%), Positives = 232/535 (43%), Gaps = 62/535 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+   +S ++S     GD             V+   ++    +  +   +   
Sbjct: 253 MEAEGVSPNAATYSVIISGYGRLGD-------------VEAAERWFQRALSENWHHNDVI 299

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK--LCARASRKHLLVF-VLE 117
           YN +++A    G  ++   +   M E G +  +  YN+++   +  RA  K L VF  L+
Sbjct: 300 YNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLK 359

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-----QAMREGRRDVCKIIRELDLED 172
              E G++  + ++  L+  Y   G ++ A  I      Q ++  R+    II     + 
Sbjct: 360 ARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMII-----DG 414

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           Y     GD  +   VFE +    I              P+   Y  LM  +   G+++  
Sbjct: 415 YV--QLGDTANAFSVFEDMSNAGIK-------------PDGITYNILMNAFCKNGQMNRA 459

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +L    R E     P   TYT ++   +K G +  A + + +M   G   +  TYN++
Sbjct: 460 LELLA---RMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVI 516

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G  Q  Q+D+A  ++ EM   A + P+  SY  LI+G+  I D   A  +FN ++  G
Sbjct: 517 MHGLAQAGQMDRAASIIDEMV-VAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVG 575

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  I+Y +L+KA   + + +    +  EM     V ++   +N+L++G+ + G + EA
Sbjct: 576 LKPDVIAYASLLKACCKAGRMQSTLAITAEMAA-AGVPMNNYIYNILLDGWAQRGDMWEA 634

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             I+++M+  G  P++ +Y S  N      K G+ L   + I+   ++K++GV       
Sbjct: 635 SDIMQKMRHEGLTPDIHSYTSFINACC---KAGDMLKATETIE---QMKQQGVQ------ 682

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           P L+    L+   A     A++  KAL     M+  G+ P+K  Y  I   + SR
Sbjct: 683 PNLQAYTTLIHGWAS----ASYPEKALICYDEMKSAGMIPDKPLYHCIMTSLLSR 733



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 114/493 (23%), Positives = 200/493 (40%), Gaps = 45/493 (9%)

Query: 25  DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQM 84
           +D P ++ K+ D   KR++K           P    +  ++N     G        F+ M
Sbjct: 171 EDHPKDARKVVDAF-KRIKK-----------PKQRDHTLLVNYYGKRGDKHSARAAFESM 218

Query: 85  HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
              G +P+V +Y  +I   A A      +  +E +   G++    T+  +++ Y   GD+
Sbjct: 219 RAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDV 278

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
           E AE   Q           +I    +  Y      +  +           +I  + E   
Sbjct: 279 EAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAE-----------AIMTAMEEQG 327

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           L  T      +Y  LM GY++   V   + +   ++ + +    P  V+Y  +++   K 
Sbjct: 328 LEATLG----LYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKL 383

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G MD+A Q+  EM   G+  NR TY++++ GY Q      A  +  +M+ +A I+PD ++
Sbjct: 384 GKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMS-NAGIKPDGIT 442

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YNIL++ F        AL     M +    PT  +YT ++  F      ++A +   +M 
Sbjct: 443 YNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDM- 501

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           +    +     +N+++ G  + G ++ A  II+ M   G +PN  +Y +L  G +     
Sbjct: 502 KMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDM 561

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
           G A   +  IKE                  LKPD     +L   C +A   +  L I A 
Sbjct: 562 GLAFKYFNRIKE----------------VGLKPDVIAYASLLKACCKAGRMQSTLAITAE 605

Query: 505 MEEHGIPPNKTKY 517
           M   G+P N   Y
Sbjct: 606 MAAAGVPMNNYIY 618



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 181/451 (40%), Gaps = 76/451 (16%)

Query: 1   MLRSGYLPHVKAWS---TVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD---IVSDS 54
           ML  GY+ H +A      V  RL A  + G   +V  +  ++    K    D    +S+ 
Sbjct: 337 MLMDGYV-HCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNE 395

Query: 55  KPDTA------AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
             D         Y+ +++    LG       +F+ M   G KPD +TYN+++    +  +
Sbjct: 396 MEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQ 455

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRE 167
            +  + +L R+        + T+  ++  ++  GDL +A   V+ M+  G R        
Sbjct: 456 MNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAAT--- 512

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
            ++  +     G  D    + ++++   ++P             N R YTTL++GY    
Sbjct: 513 YNVIMHGLAQAGQMDRAASIIDEMVVAGVHP-------------NERSYTTLIEGY---A 556

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            + D         R ++    PD + Y +++ A  KAG M     + AEM   GVP N  
Sbjct: 557 CIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNY 616

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDA------------------------------- 316
            YNILL G+ Q+  + +A +++++M  +                                
Sbjct: 617 IYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQM 676

Query: 317 ---KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
               ++P++ +Y  LI G+        AL  ++EM++ G+ P K  Y  +M +  LS   
Sbjct: 677 KQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSL-LSRAA 735

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
                VFD +LR        V   M+ +G C
Sbjct: 736 VARETVFDGVLR--------VTSEMVDQGIC 758



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 19/258 (7%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR+V+    RI  P  R  + +L+  Y ++     A+     M   A IEP+V SY  LI
Sbjct: 177 ARKVVDAFKRIKKPKQR-DHTLLVNYYGKRGDKHSARAAFESMRA-AGIEPNVHSYTNLI 234

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
             + +  D  GA+    EM A G++P   +Y+ ++  +      + A + F   L +   
Sbjct: 235 HAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWH 294

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D++ +N ++  YC+ G +E A+ I+  M+E G    +  Y  L +G    R   + L 
Sbjct: 295 HNDVI-YNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLN 353

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           +++ +K R E               L P       L ++  +     KAL+I   ME+ G
Sbjct: 354 VFRRLKARTETG-------------LSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQG 400

Query: 510 IPPNKTKYKKI---YVEM 524
           I  N+  Y  I   YV++
Sbjct: 401 IKHNRKTYSMIIDGYVQL 418


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 207/452 (45%), Gaps = 28/452 (6%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           V  ++  D  +        P++     P  A ++  L+A  + GKP   LQ+F +M    
Sbjct: 102 VSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLK 161

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVF---VLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
            KP++LT N ++    R      +     V + ++++G++L + TF  LV  Y   G LE
Sbjct: 162 LKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLE 221

Query: 146 IAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDD---DEVFEKLLPNSINPSSE 201
            A  +++ M  E + +   +     L+  S +    D  +   D     L+PN +  ++ 
Sbjct: 222 DALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNL 281

Query: 202 ----------------PPLLPKT-FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                             L+ +T   P+   Y  L+ G  N G + + + ++ AM+  + 
Sbjct: 282 VYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLK- 340

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD VTY T++    + G    AR+++ +M   GV AN++T+NI LK  C++ + + 
Sbjct: 341 --LQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREA 398

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
               ++E+ D     PD+V+Y+ LI  ++ + D +GAL    EM  +GI    I+  T++
Sbjct: 399 VTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTIL 458

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            A     +   A+ + +   +   + VD V +  L+ G+ R   VE+A  + + MK+   
Sbjct: 459 DALCKERKLDEAHNLLNSAHKRGFI-VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKI 517

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            P V+T+ SL  G+    K   A+  + E+ E
Sbjct: 518 TPTVSTFNSLIGGLCHHGKTELAMEKFDELAE 549



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 149/317 (47%), Gaps = 30/317 (9%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK---AGSM 267
           P+  ++   +  Y++EG+    +++   M R +     P+ +T  T++  LV+   + S+
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLK---LKPNLLTCNTLLIGLVRYPSSFSI 185

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             AR+V  +M +IGV  N  T+N+L+ GYC + +++ A  +L  M  + K+ PD V+YN 
Sbjct: 186 SSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNT 245

Query: 328 LIDGFILIDDSAGALTFFNE----MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++          G L+   E    M+  G+ P +++Y  L+  +      K A ++  E+
Sbjct: 246 ILKAM----SKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIV-EL 300

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++   V  D+  +N+L+ G C  G + E   +++ MK     P+V TY +L +G      
Sbjct: 301 MKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGL 360

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  L +++ E   VK   V  +  L    K ++           R A  RK  E+V 
Sbjct: 361 SLEARKLMEQM-ENDGVKANQVTHNISLKWLCKEEK-----------REAVTRKVKELV- 407

Query: 504 CMEEHGIPPNKTKYKKI 520
             + HG  P+   Y  +
Sbjct: 408 --DMHGFSPDIVTYHTL 422



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 166/365 (45%), Gaps = 22/365 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PD   YN +++ C  LG   +  +L +QM   G K + +T+N+ +K LC    R+ +  
Sbjct: 342 QPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTR 401

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V E +   G +  + T+ +L+ AY+  GDL  A  +++ M +    +  I     L+  
Sbjct: 402 KVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDAL 461

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
             E + D+  +       L NS +         + F  +   Y TL+ G+  E +V   +
Sbjct: 462 CKERKLDEAHN-------LLNSAH--------KRGFIVDEVTYGTLIMGFFREEKVEKAL 506

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            M   M++ +     P   T+ +++  L   G  + A +   E+   G+  +  T+N ++
Sbjct: 507 EMWDEMKKVKIT---PTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSII 563

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GYC++ +++KA E   E    +  +PD  + NIL++G      +  AL FFN +     
Sbjct: 564 LGYCKEGRVEKAFEFYNESIKHS-FKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEERE 622

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             T ++Y T++ AF    + K A  +  EM  +  ++ D   +N  +      G + E  
Sbjct: 623 VDT-VTYNTMISAFCKDKKLKEAYDLLSEM-EEKGLEPDRFTYNSFISLLMEDGKLSETD 680

Query: 414 RIIER 418
            ++++
Sbjct: 681 ELLKK 685



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/481 (20%), Positives = 192/481 (39%), Gaps = 65/481 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+   YN ++     LG  K+  Q+ + M +    PD+ TYN++I  LC   S +  L  
Sbjct: 273 PNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLE- 331

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++ +  + +   + T+ +L+      G    A  +++ M        ++   + L+   
Sbjct: 332 LMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLC 391

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            E + +              ++    +  +    F+P+   Y TL+K Y+  G +S  + 
Sbjct: 392 KEEKRE--------------AVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALE 437

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M   MR         + +T  T++ AL K   +D A  +L    + G   + +TY  L+ 
Sbjct: 438 M---MREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIM 494

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF--------------------IL 334
           G+ ++ +++KA E+  EM    KI P V ++N LI G                     +L
Sbjct: 495 GFFREEKVEKALEMWDEMKK-VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLL 553

Query: 335 IDDSA---------------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
            DDS                 A  F+NE       P   +   L+         + A   
Sbjct: 554 PDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNF 613

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F+ ++ +   +VD V +N ++  +C+   ++EA  ++  M+E G  P+  TY S  + + 
Sbjct: 614 FNTLIEER--EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLM 671

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL--------DALADICVR 491
              K  E   L K+   +    K  +  +++  P     +E L        D + ++C R
Sbjct: 672 EDGKLSETDELLKKFSGKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDVIDELCSR 731

Query: 492 A 492
            
Sbjct: 732 G 732



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 123/318 (38%), Gaps = 50/318 (15%)

Query: 5   GYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G+ P +  + T++      GD  G +E           +R+     I    K +T   N 
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALE----------MMREMGQKGI----KMNTITLNT 456

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +L+A     K  +   L +  H+ G   D +TY  +I    R  +    + + + + ++ 
Sbjct: 457 ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN------ 177
           IT  ++TF SL+      G  E+A      + E             L D S+ N      
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGL----------LPDDSTFNSIILGY 566

Query: 178 --EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG  +   E + + + +S             F P++     L+ G   EG     +  
Sbjct: 567 CKEGRVEKAFEFYNESIKHS-------------FKPDNYTCNILLNGLCKEGMTEKALNF 613

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              +  + +     D VTY T++SA  K   +  A  +L+EM   G+  +R TYN  +  
Sbjct: 614 FNTLIEERE----VDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISL 669

Query: 296 YCQQLQIDKAKELLREMA 313
             +  ++ +  ELL++ +
Sbjct: 670 LMEDGKLSETDELLKKFS 687


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 40/339 (11%)

Query: 188 FEKLLPNSINPSSEPPLLPK-TFAPNSRIY--TTLMKGYMNEGR---VSDTVRMLGAMRR 241
           F+       +P ++PP  P+ +   N  ++   T ++G +N  R   VS   + LG M  
Sbjct: 166 FDSFKSTGTSPKNDPPQEPENSVISNGMLFAEVTSLRGDVNNLRECFVSFMFQYLGMMAP 225

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                           VS   K G +  A+ V A M + G   N +TY+ L+ GYC   +
Sbjct: 226 ----------------VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKE 269

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ++KAK +   MA    + PD+ SYNILI+GF  I  +  A+  F EM  R I P  ++Y 
Sbjct: 270 VNKAKSIFNNMAQGG-VNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYN 328

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +L+     S +   A K+ DEM  D     DI+ ++ L++  C+    ++A  ++ ++K+
Sbjct: 329 SLIDGLCKSGKISYALKLVDEM-HDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKD 387

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  PN+ TY  L NG+    +P +A    + I E   VK   +N ++            
Sbjct: 388 QGLQPNMYTYTILINGLCKGGRPEDA----QNIFEDLLVKGYNINVNT------------ 431

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +  +      F +AL +++ MEE+G  PN   Y+ I
Sbjct: 432 YTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEII 470



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y +L+ G    G++S  ++++  M    D    PD +TY++++ AL K    D+A
Sbjct: 322 PNVVTYNSLIDGLCKSGKISYALKLVDEMH---DRGQPPDIITYSSLLDALCKNHPGDKA 378

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L ++   G+  N  TY IL+ G C+  + + A+ +  ++        +V +Y ++I 
Sbjct: 379 IALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKG-YNINVNTYTVMIH 437

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
            F        AL   ++M   G  P  ++Y  ++++     +   A K+  EM+
Sbjct: 438 VFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDENDKAEKLLLEMI 491



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 118/308 (38%), Gaps = 83/308 (26%)

Query: 1   MLRSGYLPHVKAWST----------------VVSRLAASGDDGPVES----------VKL 34
           M++ G+ P+V  +S+                + + +A  G +  ++S          +K+
Sbjct: 245 MMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKM 304

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
            D  +    +     I+    P+   YN++++     GK    L+L D+MH+ G  PD++
Sbjct: 305 TDAAMNLFEEMHCRKII----PNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDII 360

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           TY+ ++    +       + +L ++ + G+   M T+  L+                   
Sbjct: 361 TYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILI------------------- 401

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
                 +CK               G  +D   +FE              LL K +  N  
Sbjct: 402 ----NGLCK--------------GGRPEDAQNIFED-------------LLVKGYNINVN 430

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            YT ++  + N G   + + ML  M   E+N   P+ VTY  ++ +L      D+A ++L
Sbjct: 431 TYTVMIHVFCNNGMFGEALAMLSKM---EENGCIPNAVTYEIIIRSLFDKDENDKAEKLL 487

Query: 275 AEMTRIGV 282
            EM   G+
Sbjct: 488 LEMITRGL 495



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 18/258 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   Y+++++    + +  K   +F+ M + G  PD+ +YN++I    +       + 
Sbjct: 251 KPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMN 310

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + E +    I   + T+ SL+      G +  A  +V  M + R     II    L D  
Sbjct: 311 LFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHD-RGQPPDIITYSSLLDAL 369

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N   D     + +              L  +   PN   YT L+ G    GR  D   
Sbjct: 370 CKNHPGDKAIALLTK--------------LKDQGLQPNMYTYTILINGLCKGGRPEDAQN 415

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   +  +  N    +  TYT ++      G    A  +L++M   G   N +TY I+++
Sbjct: 416 IFEDLLVKGYNI---NVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIR 472

Query: 295 GYCQQLQIDKAKELLREM 312
               + + DKA++LL EM
Sbjct: 473 SLFDKDENDKAEKLLLEM 490


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 149/309 (48%), Gaps = 25/309 (8%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH-PDHVTYTTVVSALVKAGSMDR 269
           P+   YT L+ G    GR+ D V++L  M     +A H PD+ T T VV +L     +D 
Sbjct: 147 PDFLTYTKLVHGLSKAGRLRDAVQVLQEMV----SARHVPDNTTLTVVVQSLCLGDRVDD 202

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR+++ EM   G+ AN ITY+ L+ G C+  ++D+A  LL          PD+V+Y+ +I
Sbjct: 203 ARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVI 262

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DG         A+  F EM     APT I+Y +L+  +  +     A ++  +M+ D   
Sbjct: 263 DGLCKAGRLRDAVDIFEEMSC---APTAITYNSLIGGYCRAGDMDEAIRLLGKMV-DDNC 318

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D++ +  L+  +C+MG +++A  + ++M  N   P+V T+ SL +G+    +  +AL 
Sbjct: 319 APDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALE 378

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L +EI  R              PP +     ++D       ++   RKA E+VA     G
Sbjct: 379 LLEEITRR------------GCPPTIYTYNCVVDGYC----KSNQVRKAEELVADFRSRG 422

Query: 510 IPPNKTKYK 518
             PN   Y 
Sbjct: 423 FVPNTVTYN 431



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 209/478 (43%), Gaps = 61/478 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG---DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD 57
           ML +GY      ++ V+  L AS      GP+    L D +  R R  S         PD
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPL----LLDEI--RDRGLS---------PD 45

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
               N +L    +       + LFD+M E GA      YN++  LC    +  LL   + 
Sbjct: 46  PVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLC----KARLLDEAMG 101

Query: 118 RILEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-------------------R 155
            +L+M   G+         ++      G L  A  + + M                   +
Sbjct: 102 LLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSK 161

Query: 156 EGR-RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL-LPNSINPSSE--PPLLPKTFAP 211
            GR RD  ++++E+     S+ +  D+     V + L L + ++ + E    +L +  A 
Sbjct: 162 AGRLRDAVQVLQEM----VSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAA 217

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRML-GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           N+  Y+ L+ G     R+ + V +L G + R+      PD VTY+TV+  L KAG +  A
Sbjct: 218 NAITYSALVDGLCKCERLDEAVALLLGEVTRR---GFTPDIVTYSTVIDGLCKAGRLRDA 274

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +  EM+        ITYN L+ GYC+   +D+A  LL +M DD    PDV++Y  L+ 
Sbjct: 275 VDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDD-NCAPDVITYTTLMS 330

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            F  +     A   F +M A  ++P  +++T+L+       + + A ++ +E+ R     
Sbjct: 331 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG-CP 389

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
             I  +N +V+GYC+   V +A+ ++   +  GF PN  TY  L  G   A +  +AL
Sbjct: 390 PTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQAL 447



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 184/407 (45%), Gaps = 36/407 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  +++  +  G+ +  +Q+  +M      PD  T  V+++      R      +
Sbjct: 147 PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 206

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLE--IAETIVQAMREGRRDVCKIIRELDLEDY 173
           +E +L  G+     T+ +LV        L+  +A  + +  R G           D+  Y
Sbjct: 207 VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTP--------DIVTY 258

Query: 174 SSENEGDDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           S+  +G        D  ++FE++                + AP +  Y +L+ GY   G 
Sbjct: 259 STVIDGLCKAGRLRDAVDIFEEM----------------SCAPTAITYNSLIGGYCRAGD 302

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           + + +R+LG M   +DN + PD +TYTT++SA  K G +D A ++  +M    +  + +T
Sbjct: 303 MDEAIRLLGKM--VDDNCA-PDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVT 359

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           +  L+ G C + +++ A ELL E+       P + +YN ++DG+   +    A     + 
Sbjct: 360 FTSLVDGLCGEGRMEDALELLEEITRRG-CPPTIYTYNCVVDGYCKSNQVRKAEELVADF 418

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-VKVDIVAWNMLVEGYCRMG 407
           R+RG  P  ++Y  L+     + +   A +  D++  +       +  + ++++  CR G
Sbjct: 419 RSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG 478

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             ++A +  E M + G+ P  AT+ ++   +  A +P +A  L +E+
Sbjct: 479 RTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEM 525



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 163/347 (46%), Gaps = 33/347 (9%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           L  ++   G  PD++TY+ +I    +A R    V + E   EM       T+ SL+  Y 
Sbjct: 242 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE---EMSCAPTAITYNSLIGGYC 298

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE-----GDDDDDDEVFEKLLPN 194
             GD++ A  ++  M +   D C      D+  Y++        G  DD  E+F++++ N
Sbjct: 299 RAGDMDEAIRLLGKMVD---DNCAP----DVITYTTLMSAFCKMGRLDDAYELFQQMVAN 351

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
            ++P             +   +T+L+ G   EGR+ D + +L  + R+      P   TY
Sbjct: 352 KLSP-------------DVVTFTSLVDGLCGEGRMEDALELLEEITRR---GCPPTIYTY 395

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
             VV    K+  + +A +++A+    G   N +TYNIL+ G C+  + D+A + L ++  
Sbjct: 396 NCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 455

Query: 315 DAKIEPDVVS-YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
           +    P  V+ Y I++D       +  A+ F+ EM  RG  P   ++ T++ A   + QP
Sbjct: 456 EGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQP 515

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + A+++ +EM++           + +V  YCR G++++A  +   ++
Sbjct: 516 QQAHELLEEMIKYGHTP-GPGTCDAVVSAYCRAGMIQKADELASELR 561



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 28/312 (8%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P + ++  ++ G    GR+   +     + RQ ++A  PD +TYT +V  L KAG +  A
Sbjct: 113 PGTLLHNVVIGGLCRAGRLRHAL----GVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDA 168

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            QVL EM       +  T  ++++  C   ++D A+EL+ EM     +  + ++Y+ L+D
Sbjct: 169 VQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRG-MAANAITYSALVD 227

Query: 331 GFILID--DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           G    +  D A AL    E+  RG  P  ++Y+T++     + + + A  +F+EM   P 
Sbjct: 228 GLCKCERLDEAVAL-LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPT 286

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
                + +N L+ GYCR G ++EA R++ +M ++   P+V TY +L +      +  +A 
Sbjct: 287 A----ITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAY 342

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L++++                +   L PD     +L D          ALE++  +   
Sbjct: 343 ELFQQM----------------VANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 386

Query: 509 GIPPNKTKYKKI 520
           G PP    Y  +
Sbjct: 387 GCPPTIYTYNCV 398



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 104/207 (50%), Gaps = 4/207 (1%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           +H TY  ++  L KA  +D A  +L +M   G+    + +N+++ G C+  ++  A  + 
Sbjct: 79  NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVY 138

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           R+M D     PD ++Y  L+ G         A+    EM +    P   + T ++++  L
Sbjct: 139 RQMND--AHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCL 196

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA-KRIIERMKENGFYPNV 428
             +   A ++ +EML    +  + + ++ LV+G C+   ++EA   ++  +   GF P++
Sbjct: 197 GDRVDDARELVEEMLHRG-MAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDI 255

Query: 429 ATYGSLANGISLARKPGEALLLWKEIK 455
            TY ++ +G+  A +  +A+ +++E+ 
Sbjct: 256 VTYSTVIDGLCKAGRLRDAVDIFEEMS 282



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G P++  T+ ++L+G     ++     LL +   D  + PD V  N ++       
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML--RDPRVKVDIV 394
           D+  A+  F++M   G     +++TT         + +L ++    +L  +   +    +
Sbjct: 61  DTTTAMALFDKMAELG----AVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTL 116

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             N+++ G CR G +  A  +  +M +    P+  TY  L +G+S A +  +A+ + +E+
Sbjct: 117 LHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEM 175


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 188/402 (46%), Gaps = 42/402 (10%)

Query: 48  PDIVSDSK--------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           P +VS S+        PD    N ++N   +LG+      +  ++ ++G +PD +T   +
Sbjct: 80  PTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTL 139

Query: 100 IK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR--E 156
           IK LC +   K  L F  +++L  G  L   ++ +L+      G+   A   +Q +R  +
Sbjct: 140 IKGLCLKGQVKKALHF-HDKLLAQGFRLDQVSYGTLINGVCKIGETRAA---IQLLRRID 195

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
           GR      + E ++  Y++        D     KL+  + N  SE  +  K  + N   Y
Sbjct: 196 GR------LTEPNVVMYNT------IIDCLCKRKLVSEACNLFSEMSV--KGISANVVTY 241

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           + ++ G+   G++++ +  L  M  +  N   PD   Y T+V AL K G +  A+ VLA 
Sbjct: 242 SAIIHGFCIVGKLTEALGFLNEMVLKAIN---PDVYIYNTLVDALHKEGKVKEAKNVLAV 298

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           + +  +  N ITYN L+ GY        AK +   +     + PDV SYNI+I+    I 
Sbjct: 299 IVKTCLKPNVITYNTLIDGY--------AKHVFNAVGLMG-VTPDVWSYNIMINRLCKIK 349

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               AL  + EM  + + P  ++Y +L+     S +   A  + DEM  D     +++ +
Sbjct: 350 RVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEM-HDRGHHANVITY 408

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           N L+ G C+ G +++A  +I +MK+ G  P++ T   L +G+
Sbjct: 409 NSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGL 450



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 189/438 (43%), Gaps = 54/438 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P     +T++  L   G              VK+   F D  +    + D  +
Sbjct: 124 ILKWGYQPDTVTLTTLIKGLCLKGQ-------------VKKALHFHDKLLAQGFRLDQVS 170

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++N    +G+ +  +QL  ++     +P+V+ YN +I  LC R           E  
Sbjct: 171 YGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMS 230

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS---- 175
           ++ GI+  + T+ +++  +   G L  A   +  M      V K I   D+  Y++    
Sbjct: 231 VK-GISANVVTYSAIIHGFCIVGKLTEALGFLNEM------VLKAINP-DVYIYNTLVDA 282

Query: 176 -ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG   +   V   ++   + P             N   Y TL+ GY     V + V 
Sbjct: 283 LHKEGKVKEAKNVLAVIVKTCLKP-------------NVITYNTLIDGYAKH--VFNAVG 327

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++G           PD  +Y  +++ L K   ++ A  +  EM +  +  N +TYN L+ 
Sbjct: 328 LMGVT---------PDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLID 378

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+  +I  A +L+ EM D      +V++YN LI+G         A+   N+M+ +GI 
Sbjct: 379 GLCKSGRISYAWDLIDEMHDRGH-HANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQ 437

Query: 355 PTKISYTTLMKAFALSSQP-KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           P   +   L+       +  K A  +F ++L D     ++  +N+++ G+C+ GL++EA 
Sbjct: 438 PDMYTLNILLHGLLCKGKRLKNAQGLFQDLL-DKGYHPNVYTYNIIIYGHCKEGLLDEAY 496

Query: 414 RIIERMKENGFYPNVATY 431
            +  +M+++G  PN  T+
Sbjct: 497 ALQSKMEDSGCSPNAITF 514



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 137/327 (41%), Gaps = 48/327 (14%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           RR E  A  PD  T   +++     G ++ A  VL+++ + G   + +T   L+KG C +
Sbjct: 87  RRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLK 146

Query: 300 LQIDKAK-----------------------------------ELLREMADDAKIEPDVVS 324
            Q+ KA                                    +LLR + D    EP+VV 
Sbjct: 147 GQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRI-DGRLTEPNVVM 205

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN +ID        + A   F+EM  +GI+   ++Y+ ++  F +  +   A    +EM+
Sbjct: 206 YNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMV 265

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               +  D+  +N LV+   + G V+EAK ++  + +    PNV TY +L +G +     
Sbjct: 266 LKA-INPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFN 324

Query: 445 GEALL-----LWKE---IKERCEVKK--EGVNADSDLPPP-LKPDEELLDALADICVRAA 493
              L+     +W     I   C++K+  E +N   ++    + P+    ++L D   ++ 
Sbjct: 325 AVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSG 384

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKI 520
               A +++  M + G   N   Y  +
Sbjct: 385 RISYAWDLIDEMHDRGHHANVITYNSL 411



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 107/227 (47%), Gaps = 17/227 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YN ++N    + + ++ L L+ +MH+    P+ +TYN +I    ++ R      +
Sbjct: 333 PDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDL 392

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++ + + G    + T+ SL+      G L+ A  ++  M++  + +   +  L++  +  
Sbjct: 393 IDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKD--QGIQPDMYTLNILLHGL 450

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G          K L N+     +  LL K + PN   Y  ++ G+  EG + +   +
Sbjct: 451 LCKG----------KRLKNAQGLFQD--LLDKGYHPNVYTYNIIIYGHCKEGLLDEAYAL 498

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              M   ED+   P+ +T+  ++ AL++ G  D+A ++L EM   G+
Sbjct: 499 QSKM---EDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGL 542


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 127/538 (23%), Positives = 231/538 (42%), Gaps = 54/538 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P   A+S++V     +G+       K  DV  +   K  +PDIV+        +N +
Sbjct: 74  GHPPTPHAYSSIVQSFCKTGNVS-----KAMDVFAEMPAKGCEPDIVN--------FNVL 120

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           L+      K  +  +LF  M+  G KPDV+TYN MI    +  +    VF+LER+ +  +
Sbjct: 121 LSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDV 180

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
           +    T+ +L+     F  L+ A  + + M EG     +    +       +  G   + 
Sbjct: 181 SPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKL--QRAGKLVEA 238

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             V+  +   ++               N+     L    M+ G V +  +++  M  ++ 
Sbjct: 239 SRVYSDMCRKNV-----------CMTDNTYSLVVLGLSKMDGGNV-EAAKLVTEMMGKK- 285

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD   Y+ +++ L KA     A+++  EM   G+    +TYN LL+G     ++  
Sbjct: 286 --IAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQD 343

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A EL   M D  ++ PD  SYN++I GF    D+  A   F +M   GI     +Y  ++
Sbjct: 344 AMELTYFMLDQGRL-PDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMI 402

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
             F        A  +F  M      KV   ++  + +L+   C+   VEEA +++  M++
Sbjct: 403 VGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRD 462

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            GF P++  +  L + ++ A +  +A  L+KE+     +  + +   S++         L
Sbjct: 463 KGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSR---INCQQLVGSSNI---------L 510

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
           LD +    +R     +A + +  M + GI P+K  Y K+ V +  +      A QAR+
Sbjct: 511 LDGI----LRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQ----GKADQARK 560



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 155/349 (44%), Gaps = 57/349 (16%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           +P+  APN   Y  ++ GY    +  +  + L  +R  E+    P    Y+++V +  K 
Sbjct: 36  MPQHCAPNVVSYNIIIDGYC---KARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKT 92

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G++ +A  V AEM   G   + + +N+LL G  +  +I +A+EL R M +    +PDVV+
Sbjct: 93  GNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSM-NSRGCKPDVVT 151

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN +I G         A+     M+   ++PT ++YTTL+      ++ + A +VF++M 
Sbjct: 152 YNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMA 211

Query: 385 RDP-------------------------RVKVDIV---------AWNMLVEGYCRM--GL 408
             P                         RV  D+           ++++V G  +M  G 
Sbjct: 212 EGPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGN 271

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           VE AK + E M +    P+   Y  L NG+  AR+PGEA  +++E++ R           
Sbjct: 272 VEAAKLVTEMMGKK-IAPDFYAYSILINGLCKARRPGEAKEMFQEMRGR----------- 319

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             + P +     LL+ L    +  A  + A+E+   M + G  P+   Y
Sbjct: 320 -GISPTVVTYNTLLEGL----LSTAKLQDAMELTYFMLDQGRLPDTCSY 363



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 107/208 (51%), Gaps = 3/208 (1%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+ + Y  ++S L KAG +  A   L  M +   P N ++YNI++ GYC+   I+KA   
Sbjct: 8   PNAILYNNLISCLCKAGMLAEAESYLKRMPQHCAP-NVVSYNIIIDGYCKARNIEKALAF 66

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           LREM ++    P   +Y+ ++  F    + + A+  F EM A+G  P  +++  L+    
Sbjct: 67  LREM-EELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 125

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + +   A ++F  M      K D+V +N ++ G C+   ++EA  ++ERMK+    P  
Sbjct: 126 RARKIHEARELFRSM-NSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTF 184

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKE 456
            TY +L + +    +  +A  +++++ E
Sbjct: 185 VTYTTLIDHLCKFTRLQQAYEVFEKMAE 212



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 3/180 (1%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  N I YN L+   C+   + +A+  L+ M       P+VVSYNI+IDG+    
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCA--PNVVSYNIIIDGYCKAR 58

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   AL F  EM   G  PT  +Y++++++F  +     A  VF EM      + DIV +
Sbjct: 59  NIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEM-PAKGCEPDIVNF 117

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N+L+ G  R   + EA+ +   M   G  P+V TY ++  G+   +K  EA+ L + +K+
Sbjct: 118 NVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQ 177



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 8/245 (3%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L     PN+ +Y  L+      G +++    L  M +       P+ V+Y  ++    K
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQH----CAPNVVSYNIIIDGYCK 56

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A ++++A   L EM  +G P     Y+ +++ +C+   + KA ++  EM      EPD+V
Sbjct: 57  ARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKG-CEPDIV 115

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD-E 382
           ++N+L+ G         A   F  M +RG  P  ++Y T++    L    KL   VF  E
Sbjct: 116 NFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAG--LCKWKKLDEAVFLLE 173

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
            ++   V    V +  L++  C+   +++A  + E+M E         Y  L N +  A 
Sbjct: 174 RMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAG 233

Query: 443 KPGEA 447
           K  EA
Sbjct: 234 KLVEA 238



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 23/321 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P    YN +L    +  K +  ++L   M + G  PD  +YN+MI+  CA          
Sbjct: 323 PTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYC- 381

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + +++ GI L   T+  ++  ++       A  + + M+ G+ D          E   
Sbjct: 382 LFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILI 441

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S +    D  +E F+ L            +  K F P+ +I+  L+      GR+ D   
Sbjct: 442 S-SLCKTDQVEEAFKLL----------SAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFE 490

Query: 235 MLGAMRR---QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
           +   M R   Q+   S         ++  +++ GS+D A+  L +MT  G+  ++ TY+ 
Sbjct: 491 LYKEMSRINCQQLVGSS------NILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDK 544

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G C Q + D+A++L+ E+  D K  P+      L+       D  GA  F+  + + 
Sbjct: 545 LVVGLCWQGKADQARKLVEELVRDGK-RPENQGLRQLLGALCAQGDFQGAYEFYCWLPSV 603

Query: 352 GIAPTKISYTTLMKAFALSSQ 372
           G+  T   + TL+ +  L+ +
Sbjct: 604 GVEVTLGMHNTLVTSCCLARK 624



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 168/444 (37%), Gaps = 65/444 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLF-DVVVKRVRKFSDPDIVSDSKPDTA 59
           M R         +S VV  L+   D G VE+ KL  +++ K++             PD  
Sbjct: 245 MCRKNVCMTDNTYSLVVLGLSKM-DGGNVEAAKLVTEMMGKKI------------APDFY 291

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           AY+ ++N      +P +  ++F +M   G  P V+TYN +++     ++    + +   +
Sbjct: 292 AYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFM 351

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+ G      ++  ++  +   GD   A  + Q       D+ K    L+   Y+    G
Sbjct: 352 LDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQ-------DMIKDGIVLNTWTYNFMIVG 404

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              D+      +L   +          K  APN   Y  L+       +V +  ++L AM
Sbjct: 405 FIKDEAWSSAWMLFKRMQSGKND----KVPAPNMFTYEILISSLCKTDQVEEAFKLLSAM 460

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R   D    P    +  ++S L +AG +D A ++  EM+RI                CQQ
Sbjct: 461 R---DKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRIN---------------CQQ 502

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
           L                     V S NIL+DG +       A  F  +M   GI P K +
Sbjct: 503 L---------------------VGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFT 541

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+       +   A K+ +E++RD + + +      L+   C  G  + A      +
Sbjct: 542 YDKLVVGLCWQGKADQARKLVEELVRDGK-RPENQGLRQLLGALCAQGDFQGAYEFYCWL 600

Query: 420 KENGFYPNVATYGSLANGISLARK 443
              G    +  + +L     LARK
Sbjct: 601 PSVGVEVTLGMHNTLVTSCCLARK 624


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 147/302 (48%), Gaps = 16/302 (5%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y T++     +G +   + +L  M  +   AS P+ ++YTT++ AL       +A  +L 
Sbjct: 59  YNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLR 118

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   GV  + +TY  L++G C    +D A ELL EM +   IEP+VV Y+ L+ G+   
Sbjct: 119 SMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESG-IEPNVVVYSCLLHGYCKT 177

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                    F EM  RGI P  + YT L+ +     + K A +V D M+ +  ++ ++V 
Sbjct: 178 GRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMD-MMTERGLEPNVVT 236

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L+   C+ G V EA  + + M E G  P+V TY +L  G+S   +  EA+ L +E+ 
Sbjct: 237 YNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEM- 295

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                    +  ++ + P L     ++  L  I     + R+AL++ A M E+G   N  
Sbjct: 296 ---------MQGETRVRPDLMTFNSVIHGLCKI----GWMRQALQVRAMMAENGCRCNLV 342

Query: 516 KY 517
            +
Sbjct: 343 AF 344



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 197/451 (43%), Gaps = 43/451 (9%)

Query: 7   LPHVK---AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFS-DPDIVSDSKPDTAAYN 62
           LP V+   +++TV++ L   G           D  +  +R  S +P + S  +P+  +Y 
Sbjct: 50  LPSVRDAVSYNTVLAALCRQG---------CLDAALFLLRVMSHEPRLAS--RPNAISYT 98

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            ++ A     +  + + L   M + G +PDV+TY  +I+    A+     V +L  + E 
Sbjct: 99  TLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCES 158

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           GI   +  +  L+  Y   G  E    + + M  GR     ++    L D S    G   
Sbjct: 159 GIEPNVVVYSCLLHGYCKTGRWESVGKVFEEM-SGRGIEPDVVMYTALID-SLCRHGKVK 216

Query: 183 DDDEVFEKLLPNSINPSS----------------------EPPLLPKTFAPNSRIYTTLM 220
               V + +    + P+                          +  K   P+   Y TL+
Sbjct: 217 KAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLI 276

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G  +   + + + +L  M + E     PD +T+ +V+  L K G M +A QV A M   
Sbjct: 277 TGLSSVLEMDEAMALLEEMMQGETRV-RPDLMTFNSVIHGLCKIGWMRQALQVRAMMAEN 335

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G   N + +N+L+ G  +  ++ KA EL+ EMA    ++PD  +Y+ILI+GF  +     
Sbjct: 336 GCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSG-LQPDSFTYSILINGFCKMRQVER 394

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A ++ +EMR +G+ P  + Y  L+KA         A  +F+EM  D   K+D  A++ ++
Sbjct: 395 AESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEM--DRNCKLDAAAYSTMI 452

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
            G  + G  + A+  ++ M + G  P+  TY
Sbjct: 453 HGAFKSGEKKIAEEFLKDMIDEGLIPDAVTY 483



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 41/291 (14%)

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
           S EP L  +   PN+  YTTLM+    + R +  V   G +R  +D    PD VTY T++
Sbjct: 83  SHEPRLASR---PNAISYTTLMRALCADRRAAQAV---GLLRSMQDCGVRPDVVTYGTLI 136

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD---- 314
             L  A  +D A ++L EM   G+  N + Y+ LL GYC+  + +   ++  EM+     
Sbjct: 137 RGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIE 196

Query: 315 ------------------------------DAKIEPDVVSYNILIDGFILIDDSAGALTF 344
                                         +  +EP+VV+YN+LI+          AL  
Sbjct: 197 PDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDL 256

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR-DPRVKVDIVAWNMLVEGY 403
              M  +G+ P  ++Y TL+   +   +   A  + +EM++ + RV+ D++ +N ++ G 
Sbjct: 257 RKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGL 316

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           C++G + +A ++   M ENG   N+  +  L  G+    K  +A+ L  E+
Sbjct: 317 CKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEM 367



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 95/239 (39%), Gaps = 52/239 (21%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           ++YN +L   C+Q  +D A  LLR M+     EP + S                      
Sbjct: 57  VSYNTVLAALCRQGCLDAALFLLRVMSH----EPRLASR--------------------- 91

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
                   P  ISYTTLM+A     +   A  +   M +D  V+ D+V +  L+ G C  
Sbjct: 92  --------PNAISYTTLMRALCADRRAAQAVGLLRSM-QDCGVRPDVVTYGTLIRGLCDA 142

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI-KERCEVKKEGV 465
             V+ A  ++  M E+G  PNV  Y  L +G     K G     W+ + K   E+   G+
Sbjct: 143 ADVDTAVELLNEMCESGIEPNVVVYSCLLHGYC---KTGR----WESVGKVFEEMSGRGI 195

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
                     +PD  +  AL D   R    +KA  ++  M E G+ PN   Y  +   M
Sbjct: 196 ----------EPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSM 244



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 120/271 (44%), Gaps = 20/271 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   +N+V++    +G  ++ LQ+   M E G + +++ +N++I    R  +    + 
Sbjct: 303 RPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAME 362

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++ +   G+     T+  L+  +     +E AE+ +  MR    +  + +  + L    
Sbjct: 363 LMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEP-EPVHYIPLLKAM 421

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             ++G      ++F ++  N                 ++  Y+T++ G    G       
Sbjct: 422 C-DQGMMGQARDLFNEMDRNC--------------KLDAAAYSTMIHGAFKSGEKKIAEE 466

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            L  M    D    PD VTY+  ++   K+G +  A +VL +MT  G   +   ++ L++
Sbjct: 467 FLKDMI---DEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQ 523

Query: 295 GYCQQLQIDKAKELLREM-ADDAKIEPDVVS 324
           GY  +   +K  EL REM A D  ++P ++S
Sbjct: 524 GYGAKGDTEKILELTREMTAKDVALDPKIIS 554


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 203/468 (43%), Gaps = 68/468 (14%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           ++A+ A++ A ++ G+    +Q F +M EF ++P    YN ++K    +    L + +  
Sbjct: 137 SSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYN 196

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           R++  G      T+  L+                         +CK              
Sbjct: 197 RMVAAGCAPNRATYNVLMDG-----------------------LCK-------------- 219

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +G   D  ++F+++L   I              PN +IYT L+    N G++ + V++LG
Sbjct: 220 QGMAGDALKMFDEMLDRGI-------------MPNVKIYTVLLSSLCNAGKIDEAVQLLG 266

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           +M+   D    PD VTY   +S L K G ++ A Q L  +   G       Y+ L+ G  
Sbjct: 267 SMK---DKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLF 323

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           Q  + D+     + M +   I PDVV Y I+I G         AL+F + M+ +G  P  
Sbjct: 324 QARRFDEGFGYYKTMLER-NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDT 382

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             Y T++K        + A+ +  EML++  V +D     +++ G C+ GLV+EA +I +
Sbjct: 383 FCYNTVLKVLCDHGDLERAHTLRSEMLQNNLV-LDSTTQTIMICGLCKRGLVDEAMQIFD 441

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL-- 475
            M E+G  P V TY +L +G     +  EA +L+ ++       + G N    L   L  
Sbjct: 442 EMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKM-------EMGNNPSLFLRLTLGA 494

Query: 476 ---KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +  E L   + D+C ++    KA +++  + + G+ P+   Y  +
Sbjct: 495 NQVRDSESLRKLVHDMC-QSGQVLKAYKLLRSIIDSGVVPDVVTYNTL 541



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 189/423 (44%), Gaps = 39/423 (9%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +   P+ A YN +++     G     L++FD+M + G  P+V  Y V++     A + 
Sbjct: 199 VAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
              V +L  + + G      T+ + ++     G +  A   +  +++G          L 
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGG-------FALG 311

Query: 170 LEDYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           L+ YS   +G       DE F               +L +  +P+  +YT +++G    G
Sbjct: 312 LKGYSCLIDGLFQARRFDEGF----------GYYKTMLERNISPDVVLYTIMIRGCAEAG 361

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ D +  L  M+++      PD   Y TV+  L   G ++RA  + +EM +  +  +  
Sbjct: 362 RIEDALSFLDVMKKK---GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDST 418

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           T  I++ G C++  +D+A ++  EM +    +P V++YN LIDGF        A   F++
Sbjct: 419 TQTIMICGLCKRGLVDEAMQIFDEMGEHG-CDPTVMTYNALIDGFYREGRLEEARMLFHK 477

Query: 348 MRARGIAPTKI--------------SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           M   G  P+                S   L+     S Q   A K+   ++ D  V  D+
Sbjct: 478 MEM-GNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSII-DSGVVPDV 535

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L+ G C+   ++ A R+ + ++  G  P+  TYG+L +G+  A +  +A++L++ 
Sbjct: 536 VTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQN 595

Query: 454 IKE 456
           I +
Sbjct: 596 ILQ 598



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 124/309 (40%), Gaps = 56/309 (18%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +S  +  L+  + + GR +D V+   A  R ++  S P    Y T++ ALV +G +  A 
Sbjct: 136 SSSAFAALVAAHSSAGRHADAVQ---AFSRMDEFQSRPTAFVYNTILKALVDSGVILLAL 192

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +   M   G   NR TYN+L+ G C+Q            MA DA               
Sbjct: 193 ALYNRMVAAGCAPNRATYNVLMDGLCKQ-----------GMAGDA--------------- 226

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                     L  F+EM  RGI P    YT L+ +   + +   A ++   M +D     
Sbjct: 227 ----------LKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM-KDKGCLP 275

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V +N  + G C++G V EA + +  +++ GF   +  Y  L +G+  AR+  E    +
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           K + ER                 + PD  L   +   C  A     AL  +  M++ G  
Sbjct: 336 KTMLER----------------NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFV 379

Query: 512 PNKTKYKKI 520
           P+   Y  +
Sbjct: 380 PDTFCYNTV 388



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           K +R   D  +V    PD   YN ++N           ++LF ++   G  PD +TY  +
Sbjct: 521 KLLRSIIDSGVV----PDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTL 576

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           I    RA R++  + + + IL+ G +  ++ + S++
Sbjct: 577 IDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMM 612


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 120/482 (24%), Positives = 200/482 (41%), Gaps = 69/482 (14%)

Query: 18  SRLAASGDDGPVESVKLFDVVVKRVRK-------FSDPDIVSDSKPDTAAYNAVLNACAN 70
           SRL  S       S +L  V++  V+        F       D +     YN    A   
Sbjct: 43  SRLGFSMKWNGQLSQRLVGVILHMVKNGESAMVFFGWAGTRQDFRHTVHTYNCFYEALIR 102

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
            G+ ++  +LF +       PD +TY ++I+      +  L   + E +++ G+   + T
Sbjct: 103 TGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLT 162

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
            + L+ A    G+LE+A    + M       C     + +              D +F  
Sbjct: 163 CKFLLNALCKSGNLELALRYFEKMSS---IPCAATWTILI--------------DGLFRA 205

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +  +      E   +  T  PN+  YT ++ G +  G+V++  R+L  M         P 
Sbjct: 206 IRVDEACYYFEE--MKHTAIPNNWTYTVVINGLVKAGKVAEAERVLQEM-------PVPT 256

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
              YT+V+    KAG M +A  +L +M R G   + +TYN L+ G+C+  +ID+A ELL 
Sbjct: 257 LANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLE 316

Query: 311 EMADD------------------AK-----------------IEPDVVSYNILIDGFILI 335
           EM  +                  AK                   P+VVSYN LIDGF   
Sbjct: 317 EMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKA 376

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A   F EM   G  P  ++Y+TL++    + +   A+   +EM+   ++   +  
Sbjct: 377 ARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMV-GKKILPKVPV 435

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ ++ G CR G ++ A  + + M  NG  PN+A Y SL  G+    +  +A L  KE+ 
Sbjct: 436 YSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMT 495

Query: 456 ER 457
           ER
Sbjct: 496 ER 497



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 179/447 (40%), Gaps = 71/447 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+    LP V  +S+V+S L  +G+     +V  FD +V            +  +P+ A 
Sbjct: 424 MVGKKILPKVPVYSSVISGLCRAGELDAASTV--FDSMV-----------ANGCQPNLAV 470

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++      G+         +M E G  PD +TY  +I    R SR      +  R L
Sbjct: 471 YNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSL 530

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E GI +  T+   ++A+      LE A+ +++                            
Sbjct: 531 EQGIEISETSCNVVIAS---LRCLEQAQRVLRV--------------------------- 560

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                  +L    +P +  Y T+++    E  +++  ++L  M 
Sbjct: 561 -----------------------VLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMI 597

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD  T   +V A+ +      A   L EM R+G   +  TY+ LL    +  
Sbjct: 598 ---GAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAG 654

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +  +A  +LR +       PD + Y  LI  +   D    A     E++++    + ++Y
Sbjct: 655 KPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAY 714

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            TL+K    +   ++  ++  EM R+  V V+   +N+L++G+CR+G  + A R++  MK
Sbjct: 715 NTLLKGLFRTRNLQMVYELLREMKRNEFV-VNEATFNILIQGFCRLGQTDRAVRVLSEMK 773

Query: 421 ENGFYPNVATYGSLANGISLARKPGEA 447
           +    P+ A    L + ++ A +  E+
Sbjct: 774 KV-LTPSAAIIKFLVDELARAEREQES 799



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 98/474 (20%), Positives = 173/474 (36%), Gaps = 127/474 (26%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC--ARASRK 109
           D  P+  +YN +++  +   +     QLF +M   G  PDV+TY+ +I+ LC   RAS  
Sbjct: 358 DCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEA 417

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
           H     LE ++   I   +  + S+++     G+L+ A T                    
Sbjct: 418 H---SYLEEMVGKKILPKVPVYSSVISGLCRAGELDAAST-------------------- 454

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                            VF+ ++ N   P             N  +Y +L+ G    GR+
Sbjct: 455 -----------------VFDSMVANGCQP-------------NLAVYNSLIYGLCKTGRL 484

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD--------------------- 268
            D    +  M    +    PD VTY T++  L +    D                     
Sbjct: 485 CDAKLRVKEM---TERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSC 541

Query: 269 -----------RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
                      +A++VL  +   G       Y  +++  C++  + +A++LL +M   A 
Sbjct: 542 NVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIG-AG 600

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I+PD  + + L+      D +  A+ F  EM   G  P+  +Y+TL+ A   + +P  A+
Sbjct: 601 IKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAH 660

Query: 378 KVFDEMLRDPRVKVD-----------------------------------IVAWNMLVEG 402
            V   ++       D                                   IVA+N L++G
Sbjct: 661 VVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKG 720

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             R   ++    ++  MK N F  N AT+  L  G     +   A+ +  E+K+
Sbjct: 721 LFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMKK 774



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 171/422 (40%), Gaps = 33/422 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A Y +V+      G   K   L + M   G + D LTYN +I    R         +
Sbjct: 255 PTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYEL 314

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE +        + T+  L+A       L  A  ++  +R        ++    L D  S
Sbjct: 315 LEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFS 374

Query: 176 ENEGDDDDDDEVFEKLLPNSINP-----------------SSEP-----PLLPKTFAPNS 213
           +     +D  ++F +++    +P                 +SE       ++ K   P  
Sbjct: 375 K-AARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKV 433

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
            +Y++++ G    G +     +  +M     N   P+   Y +++  L K G +  A+  
Sbjct: 434 PVYSSVISGLCRAGELDAASTVFDSM---VANGCQPNLAVYNSLIYGLCKTGRLCDAKLR 490

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGF 332
           + EMT  G   + +TY  L+ G C+  + D+A +L +R +  +  IE    S N++I   
Sbjct: 491 VKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSL--EQGIEISETSCNVVIASL 548

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
             ++ +   L     + A G +PT   Y T++++    +    A ++ ++M+    +K D
Sbjct: 549 RCLEQAQRVLRV---VLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMI-GAGIKPD 604

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
               + LV   CR      A   +E M   G  P+V TY +L N +  A KP EA ++ +
Sbjct: 605 GSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLR 664

Query: 453 EI 454
            +
Sbjct: 665 RL 666


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 219/490 (44%), Gaps = 51/490 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T ++N ++       K K  L   ++M EFG  PD ++YN ++    +   + LL   
Sbjct: 211 PNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLK---RRLLQEA 267

Query: 116 LERILEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
            + +L+M   G++    T+  LV  Y   G L+ A  +++ M   R ++   +   ++  
Sbjct: 268 RDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMT--RNNLLPTVWTYNMLV 325

Query: 173 YSSENEGDDDDDDEV---FEKL--LPNSIN------------PSSEPPLL-----PKTFA 210
               N+G  D+   +    EK+  LP+ +              SSE   L      K   
Sbjct: 326 NGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVK 385

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
            N+  Y  ++K    +G +++    L  M   E+N   PD VTY T++ A  KAG M +A
Sbjct: 386 CNAVTYNIILKWMCKKGNMTEATTTLDKM---EENGLSPDCVTYNTLIGAYCKAGKMGKA 442

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++ EMT  G+  +  T N +L   C + ++D+A  LL   +    I  D VSY ILI 
Sbjct: 443 FRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYI-LDEVSYGILIL 501

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+   +    AL  ++EM+ R I P+ I+Y +++     S +   A    +EML +  V 
Sbjct: 502 GYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVP 561

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D   +N+++ G+C  G VE+A +    M EN F P+V T   L  G+       +AL L
Sbjct: 562 -DETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKL 620

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           +  +          V+   D+      D    + +     +   F  A +++  ME   +
Sbjct: 621 FNTL----------VSKGKDI------DVVTYNTIISSLCKEGKFENAYDLLTEMEAKKL 664

Query: 511 PPNKTKYKKI 520
            P++  YK I
Sbjct: 665 GPDQYTYKVI 674



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 138/313 (44%), Gaps = 59/313 (18%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK---AGSM 267
           P+  +  T +  Y+   +     ++   M+R       P+ +T  T++++LV+   + S+
Sbjct: 138 PSKELLDTSIGAYVQMDQPHLATQIFNKMKRLN---YRPNLLTCNTLMNSLVRYPSSSSI 194

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             ARQVL +  ++GV  N  ++NIL+ GYC + ++  A + + +M++   + PD VSYN 
Sbjct: 195 LLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCV-PDTVSYNT 253

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           ++D  +       A     +M+++G++P K +Y                           
Sbjct: 254 ILDALLKRRLLQEARDLLLDMKSKGLSPNKHTY--------------------------- 286

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
                    NMLV GYCR+GL++EA ++IE M  N   P V TY  L NG     K  EA
Sbjct: 287 ---------NMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEA 337

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             +      R E++K  V           PD    + L D C +     +   ++  M++
Sbjct: 338 FRI------RDEMEKMNV----------LPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDK 381

Query: 508 HGIPPNKTKYKKI 520
            G+  N   Y  I
Sbjct: 382 KGVKCNAVTYNII 394



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 129/314 (41%), Gaps = 19/314 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K +   YN +L      G   +     D+M E G  PD +TYN +I    +A +      
Sbjct: 385 KCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFR 444

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++ +   G+ +   T  +++        L+ A  ++ +  +    + ++   + +  Y 
Sbjct: 445 MMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYF 504

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            + +GD              ++N   E  +  +   P++  Y +++ G     +V   + 
Sbjct: 505 KDEKGD-------------RALNLWDE--MKERQIMPSTITYNSVIGGLCQSRKVDQAID 549

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            L  M    +N   PD  TY  ++      G++++A Q   EM       +  T NILL+
Sbjct: 550 KLNEML---ENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLR 606

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C++  ++KA +L   +    K + DVV+YN +I           A     EM A+ + 
Sbjct: 607 GLCREGMLEKALKLFNTLVSKGK-DIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLG 665

Query: 355 PTKISYTTLMKAFA 368
           P + +Y  ++ A  
Sbjct: 666 PDQYTYKVIIAALT 679



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 134/374 (35%), Gaps = 85/374 (22%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++ A    GK  K  ++ D+M   G K D  T N ++         H L  V
Sbjct: 421 PDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTIL---------HCLC-V 470

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            +++ E    LC  + +  +   V +G L     I+   ++ + D     R L+L D   
Sbjct: 471 EKKLDEAYNLLCSASKRGYILDEVSYGIL-----ILGYFKDEKGD-----RALNLWDEMK 520

Query: 176 ENE---------------GDDDDDDEVFEKL---LPNSINPSS----------------- 200
           E +                     D+  +KL   L N + P                   
Sbjct: 521 ERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVE 580

Query: 201 -----EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                   ++   F P+      L++G   EG +   +++   +  +  +    D VTY 
Sbjct: 581 KAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDI---DVVTYN 637

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           T++S+L K G  + A  +L EM    +  ++ TY +++       +I +A+E   +M + 
Sbjct: 638 TIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVES 697

Query: 316 AKIEPD----------------------VVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
             +                          ++Y+  I+          A+  F E+   G+
Sbjct: 698 GIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGV 757

Query: 354 APTKISYTTLMKAF 367
           A  K +Y  LM+  
Sbjct: 758 ALNKYTYLNLMEGL 771



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 28/206 (13%)

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA---FALSSQPKL 375
           EP     +  I  ++ +D    A   FN+M+     P  ++  TLM +   +  SS   L
Sbjct: 137 EPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILL 196

Query: 376 ANKVFDEMLRDPRVKVDIV----AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           A +V    L+D  +K+ +V    ++N+L+ GYC    V++A   + +M E G  P+  +Y
Sbjct: 197 ARQV----LKDS-IKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSY 251

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            ++ + +   R   EA  L  ++K +                 L P++   + L     R
Sbjct: 252 NTILDALLKRRLLQEARDLLLDMKSK----------------GLSPNKHTYNMLVCGYCR 295

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKY 517
               ++A +++  M  + + P    Y
Sbjct: 296 LGLLKEATKVIEIMTRNNLLPTVWTY 321



 Score = 38.5 bits (88), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 13/157 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G +P    ++ ++      G+             V++  +F +  I +  KPD   
Sbjct: 554 MLENGLVPDETTYNIIIHGFCLEGN-------------VEKAFQFHNEMIENLFKPDVYT 600

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N +L      G  +K L+LF+ +   G   DV+TYN +I    +  +      +L  + 
Sbjct: 601 CNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEME 660

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
              +     T++ ++AA    G ++ AE     M E 
Sbjct: 661 AKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVES 697


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 147/302 (48%), Gaps = 22/302 (7%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E     PD VT+  ++ A  +AG +D A  ++  M   G+    +TYN +LKG C+  + 
Sbjct: 184 EKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRF 243

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           DKAKE+ R M D   + PDV S+NILI GF  + +   A+ F+ EM+ R + P  +S++ 
Sbjct: 244 DKAKEVFRTM-DQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSC 302

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  F+   +   A     EM +   +  D V + M++ G+CR G + EA R+ + M   
Sbjct: 303 LIGLFSRRGEMDHAGAYLREM-KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGF 361

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER------CEVK-------KEG--VNA 467
           G  P+V TY +L NG+    +  +A  L  E++ER      C          ++G   NA
Sbjct: 362 GCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENA 421

Query: 468 ----DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
               D+ L   L+PD    ++L D   R     KA E+   M    I PN   Y  I ++
Sbjct: 422 LQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITY-SILID 480

Query: 524 MH 525
            H
Sbjct: 481 SH 482



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 184/421 (43%), Gaps = 58/421 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  ++N ++     +G+ K+ ++ + +M      PDV++++ +I L +R          
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAY 319

Query: 116 LERILEMGITLCMTTFQSLVAAY----------------VGFG---DLEIAETIVQAMRE 156
           L  +  +G+      +  ++  +                VGFG   D+    T++  +  
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGL-- 377

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
                CK  R LD E   +E E                            +   P+   +
Sbjct: 378 -----CKQHRLLDAEKLLNEME---------------------------ERGVTPDLCTF 405

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           TTL+ GY  +G   + +++   + RQ      PD VTY +++  + + G + +A ++  +
Sbjct: 406 TTLIHGYCRQGNFENALQLFDTLLRQR---LRPDVVTYNSLIDGMCRKGDLAKANELWDD 462

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M    +  N ITY+IL+  +C++ Q++ A   L EM     + P++ +YN +I G+    
Sbjct: 463 MHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNL-PNIRTYNSIIKGYCRSG 521

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +      F  +MR   + P  I++ TL+  +        A  VF+ M ++  V+ D V +
Sbjct: 522 NVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE-MVRPDAVTY 580

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           NM++ G+   G +++A R+ + M ++G  P+  TY SL NG   A    +A  L  E+  
Sbjct: 581 NMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIH 640

Query: 457 R 457
           R
Sbjct: 641 R 641



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 166/376 (44%), Gaps = 63/376 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV- 113
           PD   Y  V+      G   + L++ D+M  FG  PDV+TYN ++  LC    ++H L+ 
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLC----KQHRLLD 385

Query: 114 --FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              +L  + E G+T  + TF +L+  Y   G+ E A                    L L 
Sbjct: 386 AEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENA--------------------LQLF 425

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           D                               LL +   P+   Y +L+ G   +G ++ 
Sbjct: 426 D------------------------------TLLRQRLRPDVVTYNSLIDGMCRKGDLAK 455

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +   M  +E     P+H+TY+ ++ +  + G ++ A   L EM + G   N  TYN 
Sbjct: 456 ANELWDDMHARE---ILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS 512

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++KGYC+   + K ++ L++M  D  + PD++++N LI G+I  ++  GA   FN M   
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMRQD-NVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE 571

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            + P  ++Y  ++  F+     + A +VF  M  D  ++ D   +  L+ G+   G  ++
Sbjct: 572 MVRPDAVTYNMIINGFSEQGNMQDAGRVFKGM-GDSGIEPDRYTYMSLINGHVTAGNSKQ 630

Query: 412 AKRIIERMKENGFYPN 427
           A ++ + M   GF P+
Sbjct: 631 AFQLHDEMIHRGFAPD 646



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 193/476 (40%), Gaps = 91/476 (19%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + S   P    ++ ++       KP++  + F  + +          N ++ + +RA   
Sbjct: 79  LASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWP 138

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
           HL       +L     +   T   +V +Y    + + A+T++  M E R     ++    
Sbjct: 139 HLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEM-EKRCVFPDVVTHNV 197

Query: 170 LEDYSSENEGDDDD-----DDEVFEKLLPNSINPSSEPPLLPK----------------- 207
           L D +    GD D      D      L P  +  +S    L K                 
Sbjct: 198 LID-ARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQC 256

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM--------------------RRQE-DNA 246
           + AP+ R +  L+ G+   G V + V+    M                    RR E D+A
Sbjct: 257 SVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHA 316

Query: 247 SH-----------PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                        PD V YT V+    +AGSM  A +V  EM   G   + +TYN LL G
Sbjct: 317 GAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNG 376

Query: 296 YCQQLQIDKAKELLREMADDA----------------------------------KIEPD 321
            C+Q ++  A++LL EM +                                    ++ PD
Sbjct: 377 LCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPD 436

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           VV+YN LIDG     D A A   +++M AR I P  I+Y+ L+ +     Q + A    D
Sbjct: 437 VVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLD 496

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           EM++   +  +I  +N +++GYCR G V++ ++ +++M+++  +P++ T+ +L +G
Sbjct: 497 EMVKKGNLP-NIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHG 551



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 8/243 (3%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL  +  P  +++  L++ Y    +  +      A R   D+           +++ L +
Sbjct: 78  LLASSPTPQPQVFDLLIRTYTQSRKPREAFE---AFRLLLDHRVPVPASASNALLAVLSR 134

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG    A++    +       N  T NI++  YC+ L+ D A  ++ EM +   + PDVV
Sbjct: 135 AGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEM-EKRCVFPDVV 193

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++N+LID      D   A+   + M  RG+ P  ++Y +++K      +   A +VF  M
Sbjct: 194 THNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTM 253

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                V  D+ ++N+L+ G+CR+G V+EA +  + M+     P+V ++  L   I L  +
Sbjct: 254 -DQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCL---IGLFSR 309

Query: 444 PGE 446
            GE
Sbjct: 310 RGE 312



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 124/314 (39%), Gaps = 70/314 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVK-RVRKFSDPDIVSDSKPDTA 59
           M   G  P +  ++T++      G+     +++LFD +++ R+R            PD  
Sbjct: 393 MEERGVTPDLCTFTTLIHGYCRQGN--FENALQLFDTLLRQRLR------------PDVV 438

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER 118
            YN++++     G   K  +L+D MH     P+ +TY+++I   C +   +    F L+ 
Sbjct: 439 TYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGF-LDE 497

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +++ G    + T+ S++  Y   G+++  +  +Q MR+                      
Sbjct: 498 MVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQ---------------------- 535

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                 D VF  L+                       + TL+ GY+ E  +     +   
Sbjct: 536 ------DNVFPDLI----------------------TFNTLIHGYIKEENMHGAFNVFNI 567

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M   E     PD VTY  +++   + G+M  A +V   M   G+  +R TY  L+ G+  
Sbjct: 568 M---EKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVT 624

Query: 299 QLQIDKAKELLREM 312
                +A +L  EM
Sbjct: 625 AGNSKQAFQLHDEM 638


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 186/457 (40%), Gaps = 68/457 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G  P   +++T++  L   G  G  E++ LFD +           I    +PD   
Sbjct: 135 ILKLGCQPDTASFTTLIKGLCLEGQIG--EALHLFDKM-----------IWEGFQPDVVI 181

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N     G     ++L   M +   +PDV+ Y  +I    +  ++     +   ++
Sbjct: 182 YATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMI 241

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI+  + T  SLV A    G+ +   T++  M                          
Sbjct: 242 TKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEM-------------------------- 275

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 V  K++PN+I+                   TT++     EG V+    ++  M 
Sbjct: 276 ------VDSKIMPNAIS------------------LTTVVDALCKEGMVAQAHDVVDMMF 311

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   +   PD VTYT ++        MD A +V   M   G   N  +YN L+ GYC+  
Sbjct: 312 Q---SGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIE 368

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++DKA  L  EM    K+ P+ V+YN LI G   +     A+  F EM A G  P  ++Y
Sbjct: 369 RMDKAMYLFEEMCRQ-KLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTY 427

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+     +     A  +  + +    +  DI  + ++++G CR G +E+A+ +   + 
Sbjct: 428 RILLDYLCKNCHLDKAMALL-KAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLS 486

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             G  PNV TY  + +G+       EA  L+ E+ E 
Sbjct: 487 SKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDEN 523



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 190/482 (39%), Gaps = 74/482 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +L +   + +    L L  +M  FG   +V T NV+I      +R +    V
Sbjct: 72  PSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSV 131

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G      +F +L+                       + +C             
Sbjct: 132 LAKILKLGCQPDTASFTTLI-----------------------KGLCL------------ 156

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +   +F+K++                F P+  IY TL+ G    G  S  +R+
Sbjct: 157 --EGQIGEALHLFDKMIWEG-------------FQPDVVIYATLINGLCKTGHTSAAIRL 201

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R  E     PD V Y T++ +L K     +A  + +EM   G+  N +T N L+  
Sbjct: 202 L---RSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYA 258

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   +      LL EM  D+KI P+ +S   ++D        A A    + M   G+ P
Sbjct: 259 LCNLGEWKHVNTLLNEMV-DSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEP 317

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YT L+    L S+   A KVFD M+       ++ ++N L+ GYC++  +++A  +
Sbjct: 318 DVVTYTALIDGHCLRSEMDEAVKVFDMMVHKG-CAPNVFSYNTLINGYCKIERMDKAMYL 376

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE-------------------IKE 456
            E M      PN  TY +L +G+    +  +A+ L++E                   + +
Sbjct: 377 FEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCK 436

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
            C + K      +     L PD ++   + D   RA     A ++ + +   G+ PN   
Sbjct: 437 NCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWT 496

Query: 517 YK 518
           Y 
Sbjct: 497 YN 498



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 126/312 (40%), Gaps = 31/312 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ S  +P+  + +TVV  L   G             +V +     D    S  +PD   
Sbjct: 275 MVDSKIMPNAISLTTVVDALCKEG-------------MVAQAHDVVDMMFQSGVEPDVVT 321

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++      +  + +++FD M   G  P+V +YN +I    +  R    +++ E + 
Sbjct: 322 YTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMC 381

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              +     T+ +L+      G L+ A  + + M    + +  ++    L DY  +N   
Sbjct: 382 RQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQ-IPDLVTYRILLDYLCKNCHL 440

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           D          L  +I  S+          P+ +IYT ++ G    G + D   +   + 
Sbjct: 441 DK------AMALLKAIEGSN--------LDPDIQIYTIVIDGMCRAGELEDARDLFSNLS 486

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+  TY  +   L K G +D A ++  EM      A+  TYN + +G+ +  
Sbjct: 487 SK---GLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNN 543

Query: 301 QIDKAKELLREM 312
           +  +A +LL EM
Sbjct: 544 ETSRAIQLLEEM 555


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 191/466 (40%), Gaps = 71/466 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    Y+A++ A    G  +K + L ++M   G +P++ TY + I+   RA R      
Sbjct: 232 KPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWG 291

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + + + G    + T+  L+ A    G L+ A+ +   MR                   
Sbjct: 292 IFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMR------------------- 332

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                            + +P+   Y TLM  +   G+V D   
Sbjct: 333 -------------------------------ASSHSPDRVTYITLMDKF---GKVGDLET 358

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +       E +   PD VTYT ++ AL K+G +DRA  +L  MT  G+  N  TYN ++ 
Sbjct: 359 VKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMIC 418

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G  +  ++D+A ELL  M +   ++P   SY + ID +    D A A+  F  M+ RGI 
Sbjct: 419 GLLKARRLDEALELLENM-ESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIM 477

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P+  +    +   A + +   A  +F++ L    +  D V +NML++ Y + G +++A +
Sbjct: 478 PSIAACNASLYTLAETGRISEAEDIFND-LHKCGLSPDSVTYNMLMKCYSKAGQIDKATQ 536

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M   G  P+V    SL N +    K G     WK       +K         L P 
Sbjct: 537 LLSEMISKGCEPDVMIINSLINTL---YKAGRVDAAWKMFGRLKNLK---------LAPT 584

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +     LL  L     +     KALE+   M E G PPN   +  +
Sbjct: 585 VVTYNILLTGLG----KEGKILKALELFGSMTESGCPPNTITFNSL 626



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 214/497 (43%), Gaps = 79/497 (15%)

Query: 5    GYLPHVKAWSTVVSR---LAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            G L ++K   TVV+    L   G +G + ++++LF  + +           S   P+T  
Sbjct: 574  GRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTE-----------SGCPPNTIT 622

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            +N++L+  +        L++F +M      PDVLTYN +I    R  R     +   ++ 
Sbjct: 623  FNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMK 682

Query: 121  EM----GITLCMTTFQSLVAAYVGFGDLE-----IAETIVQAMRE------GRRDVCKII 165
            +      +TLC     +L+   V  G +E     + E + QA  +      G    C I+
Sbjct: 683  KFLSPDYVTLC-----TLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMEC-IL 736

Query: 166  RELDLEDYSSENE-------GDDD-----------------DDDEVFEKLLPN-SINPSS 200
             E ++E+  S  E         DD                 D   VF+K   N  I+P+ 
Sbjct: 737  TEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTL 796

Query: 201  EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
            E              Y  LM G +        + +   M+      +HP++ TY  ++ A
Sbjct: 797  ES-------------YNCLMDGLLGSNFTEKALELFEDMKSA---GTHPNNFTYNLLLDA 840

Query: 261  LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
              K+  +++   + +EM   G   N IT+NI++    +   ++KA +L  E+       P
Sbjct: 841  HGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMS-GDFSP 899

Query: 321  DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
               +Y  LIDG +    S  A+  F EM   G  P  + Y  L+  F  S +   A ++F
Sbjct: 900  TPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELF 959

Query: 381  DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             +M+++  ++ D+ ++ +LVE  C  G ++EA +  E +K  G  P+  +Y  + NG+  
Sbjct: 960  KKMVKEG-IRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGK 1018

Query: 441  ARKPGEALLLWKEIKER 457
            +R+  EAL L+ E+K R
Sbjct: 1019 SRRLDEALSLFSEMKNR 1035



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 129/571 (22%), Positives = 225/571 (39%), Gaps = 59/571 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  S + P    + T++ +    GD             ++ V++F +   V    PD   
Sbjct: 331 MRASSHSPDRVTYITLMDKFGKVGD-------------LETVKRFWNEMEVDGYAPDVVT 377

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++ A    G   +   + D M   G  P++ TYN MI    +A R    + +LE + 
Sbjct: 378 YTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENME 437

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            +G+     ++   +  Y   GD   A    + M+  +R +   I   +   Y+    G 
Sbjct: 438 SLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMK--KRGIMPSIAACNASLYTLAETGR 495

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + +++F  L    +             +P+S  Y  LMK Y   G++    ++L  M 
Sbjct: 496 ISEAEDIFNDLHKCGL-------------SPDSVTYNMLMKCYSKAGQIDKATQLLSEMI 542

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD +   ++++ L KAG +D A ++   +  + +    +TYNILL G  ++ 
Sbjct: 543 SK---GCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEG 599

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I KA EL   M +     P+ +++N L+D     D    AL  F  M      P  ++Y
Sbjct: 600 KILKALELFGSMTESG-CPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTY 658

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA-KRIIERM 419
            T++       +   A   F +M +   +  D V    L+ G  R G VE+A K ++E +
Sbjct: 659 NTIIYGLIREGRIDYAFWFFHQMKK--FLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFV 716

Query: 420 KENGFYPNVATYGSLANGISLARKPGEAL----------------LLWKEIKERCEVKK- 462
            +     N   +G L   I    +  EA+                ++   IK  C+ KK 
Sbjct: 717 HQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKA 776

Query: 463 -EGVNADSDLPPPL--KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
            +  N        L   P  E  + L D  + + F  KALE+   M+  G  PN   Y  
Sbjct: 777 LDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTY-N 835

Query: 520 IYVEMHSRMFTSKHASQARQDRRRERKRAAE 550
           + ++ H +   SK  ++        R R  E
Sbjct: 836 LLLDAHGK---SKRINKLYDLYSEMRSRGCE 863



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/511 (21%), Positives = 211/511 (41%), Gaps = 84/511 (16%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P   ++   +     SGD  P +++  F+ + KR              P  AA NA 
Sbjct: 440 GVKPTAFSYVLFIDYYGKSGD--PAKAIDTFETMKKR-----------GIMPSIAACNAS 486

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           L   A  G+  +   +F+ +H+ G  PD +TYN+++K  ++A +      +L  ++  G 
Sbjct: 487 LYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGC 546

Query: 125 TLCMTTFQSLV----------AAYVGFG---DLEIAETIV--QAMREGRRDVCKIIRELD 169
              +    SL+          AA+  FG   +L++A T+V    +  G     KI++ L+
Sbjct: 547 EPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALE 606

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--------PNSRIYTTLMK 221
           L  + S  E     +   F  LL + ++ +    L  K F         P+   Y T++ 
Sbjct: 607 L--FGSMTESGCPPNTITFNSLL-DCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIY 663

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-- 279
           G + EGR+         M++       PD+VT  T++  +V+ G ++ A +V+ E     
Sbjct: 664 GLIREGRIDYAFWFFHQMKK----FLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQA 719

Query: 280 -------------------------IGVPANRITYNI---------LLKGYCQQLQIDKA 305
                                    I      +  ++         L+K  C++ +   A
Sbjct: 720 CLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDA 779

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           + +  +   +  I P + SYN L+DG +  + +  AL  F +M++ G  P   +Y  L+ 
Sbjct: 780 QNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLD 839

Query: 366 AFALSSQPKLANKVFD--EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           A     + K  NK++D    +R    + + +  N+++    +   + +A  +   +    
Sbjct: 840 A---HGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGD 896

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEI 454
           F P   TYG L +G+  A +  +A+ +++E+
Sbjct: 897 FSPTPCTYGPLIDGLLKAGRSEQAMKIFEEM 927



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 137/312 (43%), Gaps = 19/312 (6%)

Query: 52   SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
            + + P+   YN +L+A     +  K   L+ +M   G +P+ +T+N++I    +++  + 
Sbjct: 825  AGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNK 884

Query: 112  LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
             + +   ++    +    T+  L+   +  G  E A  I + M +       +I  + + 
Sbjct: 885  ALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILIN 944

Query: 172  DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             +     G+ D   E+F+K++   I P             + + YT L++     GR+ +
Sbjct: 945  GFGKS--GEIDFACELFKKMVKEGIRP-------------DLKSYTILVECLCITGRIDE 989

Query: 232  TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             V+    ++        PD V+Y  +++ L K+  +D A  + +EM   G+  +  TYN 
Sbjct: 990  AVQYFEELKL---TGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNA 1046

Query: 292  LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
            L+       ++D A ++  E+     +EP V +YN LI G  L  +   A + F +M   
Sbjct: 1047 LILHLGIAGKVDVAVKMYEEL-QLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVV 1105

Query: 352  GIAPTKISYTTL 363
            G +P   ++  L
Sbjct: 1106 GCSPNTETFAQL 1117



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 123/298 (41%), Gaps = 74/298 (24%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ D V +   M+++     + +  TY T+  AL   G + RA   L +MT +G   N  
Sbjct: 146 RIEDMVFVFDLMQKK---VIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAY 202

Query: 288 TYN----ILLKGYCQQ-LQI-----------------------------DKAKELLREMA 313
           +YN    +LL G+C + L++                              K   LL EM 
Sbjct: 203 SYNGLIHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEM- 261

Query: 314 DDAKIEPDVVSYNILIDGF-----------------------------ILIDD--SAGAL 342
               + P++ +Y I I                                +LID   +AG L
Sbjct: 262 KSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKL 321

Query: 343 ----TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
                 + +MRA   +P +++Y TLM  F      +   + ++EM  D     D+V + +
Sbjct: 322 DKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAP-DVVTYTI 380

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           L+E  C+ G V+ A  +++ M   G +PN+ TY ++  G+  AR+  EAL L + ++ 
Sbjct: 381 LIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMES 438



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 19/157 (12%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M++ G  P +K+++ +V  L  +G     E+V+ F+ +     K +  D      PDT +
Sbjct: 962  MVKEGIRPDLKSYTILVECLCITGRID--EAVQYFEEL-----KLTGLD------PDTVS 1008

Query: 61   YNAVLNACANLGKPKKF---LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
            YN ++N    LGK ++    L LF +M   G  PD+ TYN +I     A +  + V + E
Sbjct: 1009 YNFIING---LGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYE 1065

Query: 118  RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
             +  +G+   + T+ +L+  +   G+ + A ++ + M
Sbjct: 1066 ELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKM 1102


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 194/432 (44%), Gaps = 46/432 (10%)

Query: 12  AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
            +ST++  L  SG+ DG             RV K    + VS   PD   YN +LN    
Sbjct: 267 TYSTLIHGLCGSGNLDGAT-----------RVYKEMAENGVS---PDVVVYNTMLNGYLR 312

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
            G+ ++ L+L+  M + G +  V++YN++I+     ++    + + E + E        T
Sbjct: 313 AGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMT 371

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDDD 185
           +  LV      G L  A +I++    GR D       LD   YSS       EG  D+  
Sbjct: 372 YGVLVHGLCKNGYLNKALSILEEAENGRGD-------LDTFAYSSMINGLCREGRLDEVA 424

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            V +++  +   P             N  +   ++ G++   ++ D +R  G M  +   
Sbjct: 425 GVLDQMTKHGCKP-------------NPYVCNAVINGFVRASKLEDALRFFGNMVSK--- 468

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P  VTY T+++ L KA     A  ++ EM + G   N ITY++L+ G CQ  ++D A
Sbjct: 469 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMA 528

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             L  + A +   +PDV  +NI+I G         AL  ++EM+ R   P  +++ TLM+
Sbjct: 529 LNLWCQ-ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLME 587

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            F      + A+K++D +L+   ++ DI+++N+ ++G C    + +A   +    + G  
Sbjct: 588 GFYKVRDFERASKIWDHILQYG-LQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVL 646

Query: 426 PNVATYGSLANG 437
           P   T+  L  G
Sbjct: 647 PTAITWNILVQG 658



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 206/483 (42%), Gaps = 56/483 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRK-------------FSD 47
           M   G+ P V ++ T+++ LA +G     +++KLFD + +R                F  
Sbjct: 150 MWGQGFSPDVFSYGTLINSLAKNGYMS--DALKLFDEMPERGVTPDVACYNILIDGFFKK 207

Query: 48  PDIVSDSK------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
            DI++ S+            P+  +YN ++N     GK  +  +++ +M +     D+ T
Sbjct: 208 GDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYT 267

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM- 154
           Y+ +I     +        V + + E G++  +  + +++  Y+  G +E    + + M 
Sbjct: 268 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVME 327

Query: 155 REGRRDVCK---IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           +EG R V     +IR L       EN    D+   ++E LLP             K    
Sbjct: 328 KEGCRTVVSYNILIRGL------FEN-AKVDEAISIWE-LLPE------------KDCCA 367

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +S  Y  L+ G    G ++   + L  +   E+     D   Y+++++ L + G +D   
Sbjct: 368 DSMTYGVLVHGLCKNGYLN---KALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVA 424

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            VL +MT+ G   N    N ++ G+ +  +++ A      M       P VV+YN LI+G
Sbjct: 425 GVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCF-PTVVTYNTLING 483

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
               +  + A     EM  +G  P  I+Y+ LM       +  +A  ++ + L +   K 
Sbjct: 484 LSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL-EKGFKP 542

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D+   N+++ G C  G VE+A ++   MK+    PN+ T+ +L  G    R    A  +W
Sbjct: 543 DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIW 602

Query: 452 KEI 454
             I
Sbjct: 603 DHI 605



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 17/270 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R  E     P   +Y ++++AL+++   D A         +G+  N  TYNIL+K  C++
Sbjct: 78  RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 137

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q DKAKELL  M       PDV SY  LI+        + AL  F+EM  RG+ P    
Sbjct: 138 KQFDKAKELLNWMWGQG-FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 196

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+  F        A+++++ +L+ P V  +I ++N+++ G C+ G  +E+  I  RM
Sbjct: 197 YNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 256

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           K+N    ++ TY +L +G+  +     A  ++KE+ E       GV+          PD 
Sbjct: 257 KKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAE------NGVS----------PDV 300

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHG 509
            + + + +  +RA    + LE+   ME+ G
Sbjct: 301 VVYNTMLNGYLRAGRIEECLELWKVMEKEG 330



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 122/554 (22%), Positives = 225/554 (40%), Gaps = 86/554 (15%)

Query: 33  KLFD--VVVKRVRKFSDPDIVSD----------SKPDTAAYNAVLNACANLGKPKKFLQL 80
           +LFD  +V     K S PD   D           +P   +YN++LNA     K  +    
Sbjct: 52  RLFDPKLVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESF 111

Query: 81  FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140
           F      G  P++ TYN++IK+  R  +      +L  +   G +  + ++ +L+ +   
Sbjct: 112 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAK 171

Query: 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS 200
            G +  A  +   M E  R V   +   ++       +GD  +  E++E+LL        
Sbjct: 172 NGYMSDALKLFDEMPE--RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKG------ 223

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
                P  + PN   Y  ++ G    G+  ++  +   M++ E      D  TY+T++  
Sbjct: 224 -----PSVY-PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ---DLYTYSTLIHG 274

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L  +G++D A +V  EM   GV  + + YN +L GY +  +I++  EL + M  +     
Sbjct: 275 LCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC--R 332

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            VVSYNILI G         A++ +  +  +      ++Y  L+     +     A  + 
Sbjct: 333 TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 392

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE--------------NGF-- 424
           +E   + R  +D  A++ ++ G CR G ++E   ++++M +              NGF  
Sbjct: 393 EEA-ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVR 451

Query: 425 -------------------YPNVATYGSLANGISLARKPGEALLLWKEIKER-------- 457
                              +P V TY +L NG+S A +  EA  L KE+ ++        
Sbjct: 452 ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMIT 511

Query: 458 --------CEVKKEGVNAD---SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
                   C+ KK  +  +     L    KPD ++ + +      +     AL++ + M+
Sbjct: 512 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 571

Query: 507 EHGIPPNKTKYKKI 520
           +    PN   +  +
Sbjct: 572 QRNCVPNLVTHNTL 585



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 15/141 (10%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           L  G+ P VK  + ++  L +SG    VE +++L+  + +R           +  P+   
Sbjct: 536 LEKGFKPDVKMHNIIIHGLCSSGK---VEDALQLYSEMKQR-----------NCVPNLVT 581

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++     +   ++  +++D + ++G +PD+++YN+ +K      R    V  L   +
Sbjct: 582 HNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAV 641

Query: 121 EMGITLCMTTFQSLVAAYVGF 141
           + G+     T+  LV  Y+  
Sbjct: 642 DRGVLPTAITWNILVQGYLAL 662


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 130/571 (22%), Positives = 224/571 (39%), Gaps = 126/571 (22%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP  ++ +  + RL+ +G+ G +             R F    + +   P    YN ++ 
Sbjct: 94  LPKARSCNAFLHRLSKAGE-GDLS------------RDFFRDMVGAGIAPTVFTYNIMIG 140

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                G       LF+QM + G  PD++TYN +I    +       V + E +  MG   
Sbjct: 141 HVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEP 200

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+ +L+ ++  F  +  A    + M++                              
Sbjct: 201 DVITYNALINSFCKFKGMLRAFEFFREMKD------------------------------ 230

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
                               K   PN   Y+TL+     EG +   ++    M R     
Sbjct: 231 --------------------KDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRV---G 267

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P+  TY++++ A  KAG++  A  +  EM +  V  N +TY  LL G C++  +++A+
Sbjct: 268 LLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAE 327

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR--------------- 351
           EL R M   A + P++ +Y  LI G I +     A+  FNEMR +               
Sbjct: 328 ELFRAMGK-AGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWG 386

Query: 352 --------------------GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                               GI    + YTTLM A+  +     A  + +EM RD   +V
Sbjct: 387 LCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEM-RDLGTEV 445

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            +V +  L++G C+ GLV+EA     RM ++   PNVA Y +L +G+      G+A  L+
Sbjct: 446 TVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLF 505

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
            E++++                 + PD+    A+ D  ++   F++AL +   M E GI 
Sbjct: 506 DEMQDK----------------NMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIE 549

Query: 512 PNKTKYKKIYVEMHSRMFTSKHASQARQDRR 542
            +   Y        S ++      Q +Q R+
Sbjct: 550 LDLYAYT-------SLVWGLSQCGQVQQARK 573



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 199/449 (44%), Gaps = 37/449 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M + G  P +  ++T++      G  G + ESV LF+ +     KF         +PD  
Sbjct: 158 MKKMGLTPDIVTYNTLID---GYGKIGLLDESVCLFEEM-----KFMG------CEPDVI 203

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER 118
            YNA++N+        +  + F +M +   KP+V++Y+ +I  LC     +  + F ++ 
Sbjct: 204 TYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVD- 262

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +  +G+     T+ SL+ A    G+L  A  +   M +   D+  I+    L D   E E
Sbjct: 263 MTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDL-NIVTYTTLLDGLCE-E 320

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G  ++ +E+F  +    +              PN + YT L+ G++    +   + +   
Sbjct: 321 GMMNEAEELFRAMGKAGV-------------TPNLQAYTALIHGHIKVRSMDKAMELFNE 367

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           MR ++     PD + + T+V  L     ++  + ++ EM   G+ AN + Y  L+  Y +
Sbjct: 368 MREKD---IKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFK 424

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
                +A  LL EM  D   E  VV++  LIDG         A+ +F  M    + P   
Sbjct: 425 AGNRTEAINLLEEMR-DLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVA 483

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            YT L+     ++    A K+FDEM +D  +  D +A+  +++G  + G  +EA  +  +
Sbjct: 484 VYTALIDGLCKNNCIGDAKKLFDEM-QDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNK 542

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEA 447
           M E G   ++  Y SL  G+S   +  +A
Sbjct: 543 MMEMGIELDLYAYTSLVWGLSQCGQVQQA 571



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 168/413 (40%), Gaps = 47/413 (11%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D KP+  +Y+ +++A    G  +  ++ F  M   G  P+  TY+ +I    +A      
Sbjct: 232 DLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEA 291

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             + + +L+  + L + T+ +L+      G +  AE + +AM  G+  V       +L+ 
Sbjct: 292 FMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAM--GKAGVTP-----NLQA 344

Query: 173 YSSENEG-----DDDDDDEVFEKLLPNSINP------------SSEPPL----------L 205
           Y++   G       D   E+F ++    I P             SE  L           
Sbjct: 345 YTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMK 404

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                 N  IYTTLM  Y   G  ++ + +L  MR   D  +    VT+  ++  L K G
Sbjct: 405 ESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMR---DLGTEVTVVTFCALIDGLCKRG 461

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +  A      M    +  N   Y  L+ G C+   I  AK+L  EM D   I PD ++Y
Sbjct: 462 LVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMI-PDKIAY 520

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             +IDG +   +   AL   N+M   GI     +YT+L+   +   Q + A K   EM+ 
Sbjct: 521 TAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIG 580

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF--------YPNVAT 430
              +  + +   +L + Y  +G ++EA  +   + E G          PN+ T
Sbjct: 581 KGIIPDETLCTRLLRKHY-ELGNIDEAIELQNELVEKGLIHGNSNPAVPNIQT 632



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 133/326 (40%), Gaps = 57/326 (17%)

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI--------- 280
           SD   +L   R    N   P    +  + S LV+ G ++ A Q    MT+          
Sbjct: 45  SDVFEILWTTR----NVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSC 100

Query: 281 --------------------------GVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
                                     G+     TYNI++   C++  +  A+ L  +M  
Sbjct: 101 NAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQM-K 159

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
              + PD+V+YN LIDG+  I     ++  F EM+  G  P  I+Y  L+ +F       
Sbjct: 160 KMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGML 219

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A + F EM +D  +K ++++++ L++  C+ G+++ A +    M   G  PN  TY SL
Sbjct: 220 RAFEFFREM-KDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSL 278

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            +    A   GEA +L  E+ +      E V+ +      +     LLD L +       
Sbjct: 279 IDANCKAGNLGEAFMLADEMLQ------EHVDLN------IVTYTTLLDGLCE----EGM 322

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
             +A E+   M + G+ PN   Y  +
Sbjct: 323 MNEAEELFRAMGKAGVTPNLQAYTAL 348


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 183/411 (44%), Gaps = 60/411 (14%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFV 115
           D A    V+ +    G+ K   + F +M E G  P+V+ Y   I  LC R   K     V
Sbjct: 107 DNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAF-HV 165

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE ++  G+   + T  +L+                         +CKI           
Sbjct: 166 LEEMVGRGLKPNVYTHTTLIDG-----------------------LCKI----------- 191

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +    +F KL+ +S            ++ PN   YT ++ GY  EG+++    +
Sbjct: 192 ---GWTERAFRLFLKLIKSS------------SYKPNVHTYTVMIGGYCREGKLARAEML 236

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  Q      P+  TYTT++    K GS DRA +++ +M + G   N  TYN ++ G
Sbjct: 237 LVRMVEQ---GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDG 293

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C++ +I +A ++LR MA    ++ D ++Y ILI           AL  F+ M   G  P
Sbjct: 294 FCKKGKIQEAYKVLR-MATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 352

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +YT+L+  +    Q + + K FD+ L    +      +  ++ GYC++G    A R+
Sbjct: 353 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK-QTYTSMIAGYCKVGRSTLALRV 411

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----CEVKK 462
            ERM +NG + +  TYG+L +G+    +  EA  L++ + ++    CEV +
Sbjct: 412 FERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTR 462



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/462 (21%), Positives = 179/462 (38%), Gaps = 68/462 (14%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           K V +F    + + + P+   Y A ++        K+   + ++M   G KP+V T+  +
Sbjct: 125 KDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTL 184

Query: 100 I-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           I  LC     +      L+ I        + T+  ++  Y   G L  AE ++  M E  
Sbjct: 185 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVE-- 242

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                                                           +   PN+  YTT
Sbjct: 243 ------------------------------------------------QGLKPNTNTYTT 254

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G+   G       ++  M+++      P+  TY  V+    K G +  A +VL   T
Sbjct: 255 LIGGHCKGGSFDRAFELMNKMKQE---GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMAT 311

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+  ++ITY IL+  +C+Q  I  A +L   M ++    PD+ +Y  LI  +      
Sbjct: 312 SQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCC-PDIEAYTSLISTYCQQRQM 370

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             +  FF++    G+ PTK +YT+++  +    +  LA +VF+ M+++     D + +  
Sbjct: 371 EESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNG-CFADSITYGA 429

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           L+ G C+   +EEAK + E M +    P   T  +L        K   A+ +   + +R 
Sbjct: 430 LISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ 489

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
           +V    V                L AL D+   + F +K L+
Sbjct: 490 QVHTVDVVVRK------------LSALGDVDAASLFLKKVLD 519



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 1/189 (0%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P +  +  +V    + G ++    +LA M R G   +  T  ++++  C++ +     E 
Sbjct: 71  PMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEF 130

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
            R M +     P+VV+Y   IDG         A     EM  RG+ P   ++TTL+    
Sbjct: 131 FRRMLETG-TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLC 189

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                + A ++F ++++    K ++  + +++ GYCR G +  A+ ++ RM E G  PN 
Sbjct: 190 KIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNT 249

Query: 429 ATYGSLANG 437
            TY +L  G
Sbjct: 250 NTYTTLIGG 258



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 116/273 (42%), Gaps = 37/273 (13%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F+ ++   T +++    +GR  D        RR  +  + P+ V YT  +  L K   + 
Sbjct: 104 FSLDNATCTVVVRSLCEKGRFKDVSEFF---RRMLETGTPPNVVNYTAWIDGLCKRRYVK 160

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  VL EM   G+  N  T+  L+ G C+    ++A  L  ++   +  +P+V +Y ++
Sbjct: 161 QAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVM 220

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM----------KAFALSSQPK---- 374
           I G+      A A      M  +G+ P   +YTTL+          +AF L ++ K    
Sbjct: 221 IGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF 280

Query: 375 -----LANKVFDEMLRDPRV---------------KVDIVAWNMLVEGYCRMGLVEEAKR 414
                  N V D   +  ++               K D + + +L+  +C+ G +  A  
Sbjct: 281 LPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALD 340

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           + +RM ENG  P++  Y SL +     R+  E+
Sbjct: 341 LFDRMVENGCCPDIEAYTSLISTYCQQRQMEES 373



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 135/331 (40%), Gaps = 32/331 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+V   +T++  L   G      + + F + +K ++        S  KP+   
Sbjct: 169 MVGRGLKPNVYTHTTLIDGLCKIG-----WTERAFRLFLKLIKS-------SSYKPNVHT 216

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++      GK  +   L  +M E G KP+  TY  +I    +         ++ ++ 
Sbjct: 217 YTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMK 276

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + T+ +++  +   G ++ A  +++          KI   + + ++    +G 
Sbjct: 277 QEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC--KQGH 334

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG-RVSDTVRMLGAM 239
                ++F++++ N   P  E        A  S I T   +  M E  +  D   M+G +
Sbjct: 335 ITYALDLFDRMVENGCCPDIE--------AYTSLISTYCQQRQMEESQKFFDKCLMIGLL 386

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                    P   TYT++++   K G    A +V   M + G  A+ ITY  L+ G C++
Sbjct: 387 ---------PTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKE 437

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++++AK L   M D   +  +V    +  +
Sbjct: 438 SRLEEAKALYEGMLDKRLVPCEVTRVTLTFE 468



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 105/285 (36%), Gaps = 59/285 (20%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGV-PANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           V+   ++ GS   AR+V   MTR GV P NR  +  L+   C++ ++++   LL  M   
Sbjct: 44  VLRVGLETGSFVYARKVFDGMTRAGVSPMNR-GFGALVVVCCREGKVEEVDALLAAMWRY 102

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
                D  +  +++              FF  M   G  P  ++YT              
Sbjct: 103 G-FSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYT-------------- 147

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
                              AW   ++G C+   V++A  ++E M   G  PNV T+ +L 
Sbjct: 148 -------------------AW---IDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLI 185

Query: 436 NGISLARKPGEALLLWKEIKERCEVK--------------KEGVNADSDL------PPPL 475
           +G+        A  L+ ++ +    K              +EG  A +++         L
Sbjct: 186 DGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGL 245

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           KP+      L     +   F +A E++  M++ G  PN   Y  +
Sbjct: 246 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAV 290


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 203/468 (43%), Gaps = 68/468 (14%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           ++A+ A++ A ++ G+    +Q F +M EF ++P    YN ++K    +    L + +  
Sbjct: 137 SSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYN 196

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           R++  G      T+  L+                         +CK              
Sbjct: 197 RMVAAGCAPNRATYNVLMDG-----------------------LCK-------------- 219

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +G   D  ++F+++L   I              PN +IYT L+    N G++ + V++LG
Sbjct: 220 QGMAGDALKMFDEMLDRGI-------------MPNVKIYTVLLSSLCNAGKIDEAVQLLG 266

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           +M+   D    PD VTY   +S L K G ++ A Q L  +   G       Y+ L+ G  
Sbjct: 267 SMK---DKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLF 323

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           Q  + D+     + M +   I PDVV Y I+I G         AL+F + M+ +G  P  
Sbjct: 324 QARRFDEGFGYYKTMLER-NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDT 382

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             Y T++K        + A+ +  EML++  V +D     +++ G C+ GLV+EA +I +
Sbjct: 383 FCYNTVLKVLCDHGDLERAHTLRSEMLQNNLV-LDSTTQTIMICGLCKRGLVDEAMQIFD 441

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
            M E+G  P V TY +L +G     +  EA +L+ ++       + G N    L   L  
Sbjct: 442 EMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKM-------EMGNNPSLFLRLTLGA 494

Query: 478 D-----EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +     E L   + D+C ++    KA +++  + + G+ P+   Y  +
Sbjct: 495 NQVCDSESLRKLVHDMC-QSGQVLKAYKLLRSIIDSGVVPDVVTYNTL 541



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 189/423 (44%), Gaps = 39/423 (9%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +   P+ A YN +++     G     L++FD+M + G  P+V  Y V++     A + 
Sbjct: 199 VAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
              V +L  + + G      T+ + ++     G +  A   +  +++G          L 
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGG-------FALG 311

Query: 170 LEDYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           L+ YS   +G       DE F               +L +  +P+  +YT +++G    G
Sbjct: 312 LKGYSCLIDGLFQARRFDEGF----------GYYKTMLERNISPDVVLYTIMIRGCAEAG 361

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ D +  L  M+++      PD   Y TV+  L   G ++RA  + +EM +  +  +  
Sbjct: 362 RIEDALSFLDVMKKK---GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDST 418

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           T  I++ G C++  +D+A ++  EM +    +P V++YN LIDGF        A   F++
Sbjct: 419 TQTIMICGLCKRGLVDEAMQIFDEMGEHG-CDPTVMTYNALIDGFYREGRLEEARMLFHK 477

Query: 348 MRARGIAPTKI--------------SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           M   G  P+                S   L+     S Q   A K+   ++ D  V  D+
Sbjct: 478 MEM-GNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSII-DSGVVPDV 535

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L+ G C+   ++ A R+ + ++  G  P+  TYG+L +G+  A +  +A++L++ 
Sbjct: 536 VTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQN 595

Query: 454 IKE 456
           I +
Sbjct: 596 ILQ 598



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 124/309 (40%), Gaps = 56/309 (18%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +S  +  L+  + + GR +D V+   A  R ++  S P    Y T++ ALV +G +  A 
Sbjct: 136 SSSAFAALVAAHSSAGRHADAVQ---AFSRMDEFQSRPTAFVYNTILKALVDSGVILLAL 192

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +   M   G   NR TYN+L+ G C+Q            MA DA               
Sbjct: 193 ALYNRMVAAGCAPNRATYNVLMDGLCKQ-----------GMAGDA--------------- 226

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                     L  F+EM  RGI P    YT L+ +   + +   A ++   M +D     
Sbjct: 227 ----------LKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM-KDKGCLP 275

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V +N  + G C++G V EA + +  +++ GF   +  Y  L +G+  AR+  E    +
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           K + ER                 + PD  L   +   C  A     AL  +  M++ G  
Sbjct: 336 KTMLER----------------NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFV 379

Query: 512 PNKTKYKKI 520
           P+   Y  +
Sbjct: 380 PDTFCYNTV 388



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           K +R   D  +V    PD   YN ++N           ++LF ++   G  PD +TY  +
Sbjct: 521 KLLRSIIDSGVV----PDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTL 576

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           I    RA R++  + + + IL+ G +  ++ + S++
Sbjct: 577 IDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMM 612


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 182/402 (45%), Gaps = 59/402 (14%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD    N VL    +  +      + ++M E G +P ++TYN ++    +  RK  +  +
Sbjct: 1082 PDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAML 1141

Query: 116  LERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------- 158
            L+ +   G + C+    T+  ++      GDLE A  +V+ MR  +              
Sbjct: 1142 LKEMETRG-SGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGL 1200

Query: 159  --RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
              R   K + +L LE    ENEG                        ++P     N+ I+
Sbjct: 1201 LARGCVKKVYDLQLE---MENEG------------------------IMPTVVTYNAMIH 1233

Query: 217  TTLMKGYMNEGRVS-DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
              L  G +   +V    +R +G +         PD +TY ++++   KAG++  A  +  
Sbjct: 1234 GLLQSGLVEAAQVKFAEMRAMGLL---------PDVITYNSLLNGYCKAGNLKEALLLFG 1284

Query: 276  EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            ++ R G+    +TYNIL+ GYC+   +++A+ L  EM +   + P+V +Y IL+ G + +
Sbjct: 1285 DLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCL-PNVCTYTILMKGSLNV 1343

Query: 336  DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
               A A  FF+EM ++G+ P   +Y T + A  +      A ++  E+L    +  D V 
Sbjct: 1344 RSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFEL-REVLMLEGISSDTVT 1402

Query: 396  WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +N+L+ G C+ G +++AK +  +M  NG  P+  TY  L + 
Sbjct: 1403 YNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHA 1444



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 170/383 (44%), Gaps = 20/383 (5%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            P    YNA+++     G  +     F +M   G  PDV+TYN ++    +A      + +
Sbjct: 1223 PTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLL 1282

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
               +   G+   + T+  L+  Y   GDLE A  + + M  G +     +    +    S
Sbjct: 1283 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEM--GEQGCLPNVCTYTILMKGS 1340

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             N        E F+++L   + P          FA N+RI   L+ G +        V M
Sbjct: 1341 LNVRSLAMAREFFDEMLSKGLQPDC--------FAYNTRICAELILGDIARAFELREVLM 1392

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            L  +          D VTY  ++  L K G++  A+++  +M   G+  + ITY  L+  
Sbjct: 1393 LEGISS--------DTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHA 1444

Query: 296  YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            +C++  + +A+++   M  D  + P  V++ ++I  +    +   A  +F +M   G+ P
Sbjct: 1445 HCERGLLREARKIFNNMISDGLL-PSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 1503

Query: 356  TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +I+Y  L+ A     + +LA+  F EML    V  +   + +L++G C++G  E+A R 
Sbjct: 1504 NEITYNVLIHALCRMGRTQLASHHFHEMLERGLV-ANKYTYTLLIDGNCKVGNWEDAMRF 1562

Query: 416  IERMKENGFYPNVATYGSLANGI 438
               M +NG +P+  T+ +L  G 
Sbjct: 1563 YFEMHQNGIHPDYLTHKALLKGF 1585



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 150/320 (46%), Gaps = 43/320 (13%)

Query: 120  LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSEN 177
            L+   TLC++ F+ + +  V   D++    +++ +R+  R  D+C               
Sbjct: 1061 LDTCSTLCLSAFREMASHGVA-PDVKDCNRVLRVLRDAARWDDICA-------------- 1105

Query: 178  EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                     V E++L   I PS                Y TL+  ++ EGR  D V ML 
Sbjct: 1106 ---------VHEEMLELGIEPSI-------------VTYNTLLDSFLKEGR-KDKVAMLL 1142

Query: 238  AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
                   +   P+ VTY  V++ L + G ++ A + L E  R+   A+  TYN L+ G  
Sbjct: 1143 KEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAE-LVEGMRLSKKASSFTYNPLITGLL 1201

Query: 298  QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
             +  + K  +L  EM ++  I P VV+YN +I G +       A   F EMRA G+ P  
Sbjct: 1202 ARGCVKKVYDLQLEMENEG-IMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDV 1260

Query: 358  ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            I+Y +L+  +  +   K A  +F + LR   +   ++ +N+L++GYCR+G +EEA+ + E
Sbjct: 1261 ITYNSLLNGYCKAGNLKEALLLFGD-LRRAGLAPTVLTYNILIDGYCRLGDLEEARILKE 1319

Query: 418  RMKENGFYPNVATYGSLANG 437
             M E G  PNV TY  L  G
Sbjct: 1320 EMGEQGCLPNVCTYTILMKG 1339



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            L A R    +   PD      V+  L  A   D    V  EM  +G+  + +TYN LL  
Sbjct: 1069 LSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDS 1128

Query: 296  YCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            + ++ + DK   LL+EM    +   P+ V+YN++I G     D   A      MR    A
Sbjct: 1129 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA 1188

Query: 355  PTKISYTTLMKAFALSSQPKLANKVFDEMLR--DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             +  +Y  L+         K   KV+D  L   +  +   +V +N ++ G  + GLVE A
Sbjct: 1189 -SSFTYNPLITGLLARGCVK---KVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAA 1244

Query: 413  KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            +     M+  G  P+V TY SL NG   A    EALLL+ +++
Sbjct: 1245 QVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLR 1287



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 45/110 (40%)

Query: 38   VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
            +++  RK  +  I     P    +  +++A    G        F +M E G +P+ +TYN
Sbjct: 1450 LLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYN 1509

Query: 98   VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
            V+I    R  R  L       +LE G+     T+  L+      G+ E A
Sbjct: 1510 VLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDA 1559


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 130/593 (21%), Positives = 250/593 (42%), Gaps = 119/593 (20%)

Query: 6   YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVL 65
           + P V +++T++SR    G         L DV     + F    +     PDT +YN ++
Sbjct: 181 FAPSVVSFNTIMSRYCKLG---------LADVA----KSFFCMMLKYGILPDTYSYNILI 227

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF------VLERI 119
           +     G  ++ L+L + M + G +PD++TY ++      A   HLL        +++++
Sbjct: 228 HGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIV------AKGFHLLGLMSGAREIIQKM 281

Query: 120 L-EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS--- 175
           L + G+   + T+  L+  +   G++E      +A+R  RRD+     +L++  YS    
Sbjct: 282 LTDEGLKPDLVTYTVLICGHCQMGNIE------EALRL-RRDLLSSGFQLNVILYSVLLS 334

Query: 176 ----------------ENEGDDDDDDEV--------------------------FEKLLP 193
                           E E ++   D V                          F ++ P
Sbjct: 335 SLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFP 394

Query: 194 NSINPSS-----------------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
           NS   S                     L+     P+  +Y  ++ GY+  G V + VR+ 
Sbjct: 395 NSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRL- 453

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              +R  D A  P  VT+ +++    K   +  AR++L  +   G+  + +TY  L+  Y
Sbjct: 454 --YKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAY 511

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++  I+K  ELL EM +   IEP VV+Y ++I G         ++    +MRA+G+AP 
Sbjct: 512 CEEGNINKLHELLLEM-NLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPD 570

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           +I+Y T+++ F  +   + A ++ D+ML    ++     +N+L++G CR G VE+A R++
Sbjct: 571 QITYNTIIQCFCKAKDMRKAFELLDDMLIH-NLEPTPATYNVLIDGLCRYGDVEDADRVL 629

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-------------------R 457
             +++         Y ++     +      A+ ++ ++ E                   R
Sbjct: 630 VSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKR 689

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           C + +        L   + PD+E+ + + +   RA       E++A M + G+
Sbjct: 690 CLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGL 742



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 147/314 (46%), Gaps = 20/314 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K FAP+   + T+M  Y   G ++D  +    M  +      PD  +Y  ++  L+ AGS
Sbjct: 179 KEFAPSVVSFNTIMSRYCKLG-LADVAKSFFCMMLKY--GILPDTYSYNILIHGLIVAGS 235

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           M+ A ++  +M + G+  + +TY I+ KG+     +  A+E++++M  D  ++PD+V+Y 
Sbjct: 236 MEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYT 295

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +LI G   + +   AL    ++ + G     I Y+ L+ +     Q   A ++  EM   
Sbjct: 296 VLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEM-EA 354

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             ++ D+V +++L+ G C+ G V++A ++ + M  N  +PN   +  +  G+       +
Sbjct: 355 NNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSD 414

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A + +                DS +   L+PD  L + + D  V+     +A+ +   + 
Sbjct: 415 ARMYF----------------DSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLR 458

Query: 507 EHGIPPNKTKYKKI 520
           +  I P+   +  +
Sbjct: 459 DKAITPSIVTFNSL 472



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 42/262 (16%)

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V D + +L  M+ Q      P   TY +++  L      D    V  ++   G P +  T
Sbjct: 99  VHDALFVLVKMKEQN---LRPSIQTYNSLLYNLRHT---DIMWDVYNDIKDSGTPQSART 152

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY----------------------- 325
            +I++ G C Q +   A   LR+  D  +  P VVS+                       
Sbjct: 153 SSIIVDGLCGQSRFRDAVLFLRQ-NDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMM 211

Query: 326 ------------NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
                       NILI G I+      AL   N+M  +G+ P  ++Y  + K F L    
Sbjct: 212 LKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLM 271

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             A ++  +ML D  +K D+V + +L+ G+C+MG +EEA R+   +  +GF  NV  Y  
Sbjct: 272 SGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSV 331

Query: 434 LANGISLARKPGEALLLWKEIK 455
           L + +    +  EAL L  E++
Sbjct: 332 LLSSLCKRGQVDEALQLLYEME 353


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 209/486 (43%), Gaps = 41/486 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L +   +      + L  QM   G  P ++T +++I              V
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSV 135

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGD----LEIAETIVQA------MREGR--RDVCK 163
           L  +L+ G  L   T  +++      G+    LE  +++V        +  G     +CK
Sbjct: 136 LGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCK 195

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS--------EPPLLPKTFAPNSRI 215
           I    +  +   + EG     + V   ++ + +               ++ +   P+   
Sbjct: 196 IGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFT 255

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           YT L+ G+   G+  +  R+L  M  +  N    +  TY  ++ AL K G + +A  +  
Sbjct: 256 YTCLIHGFCGLGQWREVTRLLCDMVDRNVNL---NVYTYNILIDALCKKGMLGKAHDMRN 312

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   + +T+N L+ GYC    + +A++L    A+   I PDV SYNILI G+   
Sbjct: 313 LMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAE-CGITPDVWSYNILIIGYCKN 371

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           +    AL+ FN+M  + +AP  ++Y++L+     S +   A ++F   + D     +++ 
Sbjct: 372 NRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSA-IHDGGPSPNVIT 430

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N++++  C++ LV++A  +   M E G  PNV++Y  L NG   +++  EA+ L++E+ 
Sbjct: 431 YNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMH 490

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            R                 L PD    + L D   ++     A E+   M + G P +  
Sbjct: 491 RR----------------NLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVI 534

Query: 516 KYKKIY 521
            Y  ++
Sbjct: 535 TYNILF 540



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 184/444 (41%), Gaps = 43/444 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY  +    +T++  L  +G+             V++  +F D  +      D   
Sbjct: 139 VLKRGYQLNAITLTTIMKGLCINGE-------------VRKALEFHDSVVAQGFLLDEVT 185

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARA---SRKHLLVFVL 116
           Y  ++N    +G  ++  +L  +M     +P+V+ YN+++  LC        + L   V+
Sbjct: 186 YGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVV 245

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII-RELDLEDYSS 175
            R    GI   + T+  L+  + G G            RE  R +C ++ R ++L  Y+ 
Sbjct: 246 GR----GIDPDVFTYTCLIHGFCGLGQ----------WREVTRLLCDMVDRNVNLNVYTY 291

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               D      +  K             ++ +   P+   + TLM GY     V +  ++
Sbjct: 292 NILIDALCKKGMLGK------AHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKL 345

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                   +    PD  +Y  ++    K   +D A  +  +M    +  N +TY+ L+ G
Sbjct: 346 FDTF---AECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDG 402

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +I  A EL   + D     P+V++YNI++D    I     A+  FN M  RG+ P
Sbjct: 403 LCKSGRISYAWELFSAIHDGGP-SPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTP 461

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              SY  L+  +  S +   A  +F+EM R   V  D V +N L++G C+ G +  A  +
Sbjct: 462 NVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVP-DSVTYNCLIDGLCKSGRISHAWEL 520

Query: 416 IERMKENGFYPNVATYGSLANGIS 439
              M + G   +V TY  L +  S
Sbjct: 521 FNVMHDGGPPVDVITYNILFDAFS 544



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 163/354 (46%), Gaps = 24/354 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +P+   YN +++     G   +   L+  +   G  PDV TY  +I   C     + +  
Sbjct: 215 RPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTR 274

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLED 172
            + + +++  + L + T+  L+ A    G L  A  +   M E G+R         DL  
Sbjct: 275 LLCD-MVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRP--------DLVT 325

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           +++   G    +D V  + L ++    +E  + P  ++     Y  L+ GY    R+ + 
Sbjct: 326 FNTLMSGYCLYNDVVEARKLFDTF---AECGITPDVWS-----YNILIIGYCKNNRIDEA 377

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M  ++     P+ VTY++++  L K+G +  A ++ + +   G   N ITYNI+
Sbjct: 378 LSLFNKMNYKK---LAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIM 434

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L   C+   +DKA EL   M +   + P+V SYNILI+G+        A+  F EM  R 
Sbjct: 435 LDALCKIQLVDKAIELFNLMFERG-LTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRN 493

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           + P  ++Y  L+     S +   A ++F+ M  D    VD++ +N+L + + ++
Sbjct: 494 LVPDSVTYNCLIDGLCKSGRISHAWELFNVM-HDGGPPVDVITYNILFDAFSKI 546


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 182/387 (47%), Gaps = 24/387 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI----KLCARASRKHL 111
           P    +N +L +          L L  +M   G KP++   N++I    +L     + H 
Sbjct: 84  PPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQ 143

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
                ++++ +G  L   ++ +L+      G+   A  ++Q + +G+      + +L+  
Sbjct: 144 AFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRV-DGK------LVQLNAV 196

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y++   G   D      K + ++ +  SE  ++ K  +PN   Y+ L+ G+   G++ D
Sbjct: 197 MYNTVIYGMCKD------KHVNDAFDLYSE--MVSKGISPNVVTYSALISGFFVVGKLKD 248

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            + +   +  +      PD  T+  +V    K   M   + V A M + G+  + +TYN 
Sbjct: 249 AIDLFNKIILEN---IKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNS 305

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GYC   +++ AK +   MA    + PD+ SYNILI+GF  I     A+  FNEM  +
Sbjct: 306 LMDGYCLVKEVNTAKSIFNTMAQGG-VNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCK 364

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            I P  ++Y +L+   + S +   A ++ D+M  D  V  +I+ +N +++   +   V++
Sbjct: 365 NIIPNVVTYNSLIDGLSKSGRISYALQLVDQM-HDRGVPPNILTYNSIIDALFKTHQVDK 423

Query: 412 AKRIIERMKENGFYPNVATYGSLANGI 438
           A  +I + K+ G  P++ TY  L +G+
Sbjct: 424 AIALITKFKDQGIQPSMYTYTILIDGL 450



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 130/273 (47%), Gaps = 18/273 (6%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           H D V+Y T++  L K G    A  +L  +    V  N + YN ++ G C+   ++ A +
Sbjct: 157 HLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFD 216

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           L  EM     I P+VV+Y+ LI GF ++     A+  FN++    I P   ++  L+  F
Sbjct: 217 LYSEMVSKG-ISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGF 275

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               + K    VF  M++   +  D+V +N L++GYC +  V  AK I   M + G  P+
Sbjct: 276 CKDRKMKEGKTVFAMMMKQGIIP-DVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPD 334

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + +Y  L NG    +K  +A+ L+ E+   C+          ++ P +     L+D L+ 
Sbjct: 335 IRSYNILINGFCKIKKVDKAMNLFNEM--HCK----------NIIPNVVTYNSLIDGLS- 381

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              ++     AL++V  M + G+PPN   Y  I
Sbjct: 382 ---KSGRISYALQLVDQMHDRGVPPNILTYNSI 411



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 47/329 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA-RASRKHLLV 113
           P+   Y+A+++    +GK K  + LF+++     KPD  T+N+++   C  R  ++   V
Sbjct: 228 PNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTV 287

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F +  +++ GI   + T+ SL+  Y    ++  A++I   M +G  +        D+  Y
Sbjct: 288 FAM--MMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNP-------DIRSY 338

Query: 174 SSENEGDDDDDDEVFEKL--LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           +    G        F K+  +  ++N  +E  +  K   PN   Y +L+ G    GR+S 
Sbjct: 339 NILING--------FCKIKKVDKAMNLFNE--MHCKNIIPNVVTYNSLIDGLSKSGRISY 388

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY-- 289
            ++++  M    D    P+ +TY +++ AL K   +D+A  ++ +    G+  +  TY  
Sbjct: 389 ALQLVDQM---HDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTI 445

Query: 290 ------------------NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
                             N+++ G+C++   D+A  LL +M D + I P+ V+Y I I  
Sbjct: 446 LIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCI-PNAVTYEITIRS 504

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISY 360
            +  +++  A   F EM  RG+     SY
Sbjct: 505 LLDNNENDKAEKLFREMITRGLLNRSASY 533


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 183/388 (47%), Gaps = 21/388 (5%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P++ TY ++I  C  A R  L    L  +++ G  +    
Sbjct: 69  PAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIA 128

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+       D   ++ +   +R   +  C  I  +   +   +   D++   E  E 
Sbjct: 129 FTPLLKGLCA--DKRTSDAMDIVLRRMTQLGC--IPNVFSYNILLKGLCDENRSQEALE- 183

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           LL    +   + P       P+   YTT++ G+  EG   D  +  G      D    P+
Sbjct: 184 LLQMMPDDGGDCP-------PDVVSYTTVINGFFKEG---DLDKAYGTYHEMLDRGILPN 233

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY+++++AL KA +MD+A +VL  M + GV  N  TYN ++ GYC   Q  +A   L+
Sbjct: 234 VVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           +M  D  +EPDVV+YN L+D          A   F+ M  RG+ P   +Y TL++ +A  
Sbjct: 294 KMHSDG-VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
                 + + D M+R+  +  +   +++L+  Y + G V++A  +  +M++ G  P+  T
Sbjct: 353 GALVEMHGLLDLMVRNG-IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 431 YGSLANGISLARKPGEALLLWKE-IKER 457
           YG++   +  + +  +A+  +++ I ER
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDER 439



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 130/259 (50%), Gaps = 9/259 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y  L+KG  +E R  + + +L  M   +     PD V+YTTV++   K G +D+A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELL-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                EM   G+  N +TY+ ++   C+   +DKA E+L  M  +  + P+  +YN ++ 
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG-VMPNCRTYNSIVH 277

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+        A+ F  +M + G+ P  ++Y +LM     + +   A K+FD M +   +K
Sbjct: 278 GYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG-LK 336

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +I  +  L++GY   G + E   +++ M  NG +PN   +  L    +   K  +A+L+
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLV 396

Query: 451 WKEIKERCEVKKEGVNADS 469
           + ++++      +G+N D+
Sbjct: 397 FSKMRQ------QGLNPDT 409



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 166/386 (43%), Gaps = 38/386 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+   Y  ++ +C   G+          + + G + D + +  ++K LCA       +  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL R+ ++G    + ++  L+         + A  ++Q M +   D        D+  Y+
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC-----PPDVVSYT 203

Query: 175 SE-----NEGDDDDDDEVFEKLL-----PNSINPSSEPPLLPKTFA-------------- 210
           +       EGD D     + ++L     PN +  SS    L K  A              
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN 263

Query: 211 ---PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              PN R Y +++ GY + G+  + +   G +++   +   PD VTY +++  L K G  
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAI---GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             AR++   MT+ G+     TY  LL+GY  +  + +   LL  M  +  I P+   ++I
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG-IHPNHYVFSI 379

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI  +        A+  F++MR +G+ P  ++Y T++     S + + A + F++M+ D 
Sbjct: 380 LICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI-DE 438

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAK 413
           R+    + +N L+   C     ++AK
Sbjct: 439 RLSPGNIVYNSLIHSLCIFDKWDKAK 464



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 154/345 (44%), Gaps = 30/345 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+V +++ ++  L    ++   E+++L  ++         PD   D  PD  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLC--DENRSQEALELLQMM---------PDDGGDCPPDVVS 201

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  V+N     G   K    + +M + G  P+V+TY+ +I    +A      + VL  ++
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S+V  Y   G  + A   ++ M     +   ++    L DY  +N G 
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP-DVVTYNSLMDYLCKN-GR 319

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F+ +    + P                 Y TL++GY  +G + +   +L  M 
Sbjct: 320 CTEARKMFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMHGLLDLMV 366

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R   N  HP+H  ++ ++ A  K G +D+A  V ++M + G+  + +TY  ++   C+  
Sbjct: 367 R---NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
           +++ A     +M D+ ++ P  + YN LI    + D    A  +F
Sbjct: 424 RVEDAMRYFEQMIDE-RLSPGNIVYNSLIHSLCIFDKWDKAKDYF 467



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 103/256 (40%), Gaps = 23/256 (8%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQ---LQIDKAKELLREMADDAKIEPDVVSYN 326
           AR V  E+ R G  A+    N  L    +      + +   + R  AD+  + P++ +Y 
Sbjct: 38  ARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADE--VTPNLCTYG 95

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILI                  +  +G     I++T L+K      +   A  +    +  
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG--FYPNVATYGSLANGISLARKP 444
                ++ ++N+L++G C     +EA  +++ M ++G    P+V +Y ++ NG       
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            +A   + E+ +R             + P +     ++ AL     +A    KA+E++  
Sbjct: 216 DKAYGTYHEMLDR------------GILPNVVTYSSIIAALC----KAQAMDKAMEVLTS 259

Query: 505 MEEHGIPPNKTKYKKI 520
           M ++G+ PN   Y  I
Sbjct: 260 MVKNGVMPNCRTYNSI 275


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 131/590 (22%), Positives = 244/590 (41%), Gaps = 117/590 (19%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P   +++TV+  L      G   S +  D++++  +            PD  +Y  V
Sbjct: 231 GCVPDAFSYNTVIKSLC-----GGSRSQEALDMLLRMTKG-------DGCSPDVVSYTMV 278

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC-ARASRKHLLVFVLERILEM 122
           ++     G+  K   LF++M + G  P+V+TYN ++  LC ARA  K  LV  L ++ + 
Sbjct: 279 IHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELV--LRQMFDN 336

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REG--------------------RRDV 161
            I     T+ +++  Y   G  + A  + + M REG                     ++ 
Sbjct: 337 SIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEA 396

Query: 162 CKIIREL-------DLEDYS-----SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
            +I   +       D+  YS        EG   D + +F  +  N I             
Sbjct: 397 AEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGI------------- 443

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
             +S  +  L+  +   G + + + +   MR Q      P+ VTY TV++AL + G +  
Sbjct: 444 VADSHCFNILINAHAKRGMMDEALLIFTEMRGQ---GVSPNVVTYATVIAALCRMGRLAD 500

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD--------------- 314
           A + L++M  IG+  N + Y+ L++G+C    + KAKEL+ EM D               
Sbjct: 501 AMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSII 560

Query: 315 -----DAKI---------------EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
                + ++                PD+ ++N LIDG+ L+     A    + M + G  
Sbjct: 561 HSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTE 620

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++Y+TL+  +  S +      +F EML   RVK   V ++++++G  R G    AK+
Sbjct: 621 PDVVTYSTLINGYFKSGRIDDGLILFREMLCK-RVKPTTVTYSLVLDGLFRAGRTSAAKK 679

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +   M E+G   +++TY  +  G+       EA+ L+ ++                    
Sbjct: 680 MFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAM----------------N 723

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
           LK +  +L+ +     +     +A ++ A +   G+ PN + Y  + + +
Sbjct: 724 LKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINL 773



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 201/479 (41%), Gaps = 80/479 (16%)

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVL-----TYNVMIKLCARASRKHLLVFVLERILE 121
           AC++   P   + LF+++    A P V+     TY +++  C RA R  L      R+L 
Sbjct: 136 ACSD--APALAVALFNRICREEAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLR 193

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+                  D  +  T ++ +   +R                      
Sbjct: 194 AGLRT----------------DGIVTNTFLKCLCYAKRT--------------------- 216

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
              DE    LL    +  SE   +P  F+     Y T++K      R  + + ML  +R 
Sbjct: 217 ---DEALSMLL----HRMSELGCVPDAFS-----YNTVIKSLCGGSRSQEALDML--LRM 262

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            + +   PD V+YT V+  L   G + +A  +  EM + GV  N +TYN ++   C+   
Sbjct: 263 TKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARA 322

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +DKA+ +LR+M D++ I+PD V+Y  +I G+  +     A   F EM   G+ P  +++ 
Sbjct: 323 MDKAELVLRQMFDNS-IQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFN 381

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +LM +     + K A ++F  +      K DI+++++L+ GY   G   +   +   M +
Sbjct: 382 SLMDSLCKHKRSKEAAEIFHSIATKGH-KPDIISYSILLHGYATEGRFVDMNNLFHSMTD 440

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEVKKEGVNAD 468
           NG   +   +  L N  +      EALL++ E++ +               + + G  AD
Sbjct: 441 NGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLAD 500

Query: 469 S------DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP-PNKTKYKKI 520
           +       +   LKP+  +  +L           KA E+V+ M + GIP PN T +  I
Sbjct: 501 AMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSI 559



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 180/432 (41%), Gaps = 62/432 (14%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVL---------------------- 116
           L  +M E G  PD  +YN +IK LC  +  +  L  +L                      
Sbjct: 223 LLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGL 282

Query: 117 -------------ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
                          +++ G+   + T+ S+V A      ++ AE +++ M +      +
Sbjct: 283 FMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDE 342

Query: 164 IIRELDLEDYSSEN---EGDDDDDDEVFEKLLPNSINPSSE-----------------PP 203
           +     +  YS      E      +   E L+P+ +  +S                    
Sbjct: 343 VTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHS 402

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +  K   P+   Y+ L+ GY  EGR  D   +  +M    DN    D   +  +++A  K
Sbjct: 403 IATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSM---TDNGIVADSHCFNILINAHAK 459

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G MD A  +  EM   GV  N +TY  ++   C+  ++  A E L +M     ++P+ V
Sbjct: 460 RGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMI-SIGLKPNTV 518

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTTLMKAFALSSQPKLANKVFDE 382
            Y+ LI GF    D   A    +EM  +GI  P    +++++ +     +   A  VF+ 
Sbjct: 519 VYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNL 578

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           ++     + DI  +N L++GYC +G +++A  +++ M   G  P+V TY +L NG   + 
Sbjct: 579 VIHIGD-RPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSG 637

Query: 443 KPGEALLLWKEI 454
           +  + L+L++E+
Sbjct: 638 RIDDGLILFREM 649



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 169/407 (41%), Gaps = 52/407 (12%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P + ++S ++   A  G    V+   LF          +D  IV+DS      +N +
Sbjct: 407 GHKPDIISYSILLHGYATEGR--FVDMNNLF-------HSMTDNGIVADSH----CFNIL 453

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +NA A  G   + L +F +M   G  P+V+TY  +I    R  R    +  L +++ +G+
Sbjct: 454 INAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGL 513

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----ENEG 179
                 + SL+  +   GDL  A+ +V  M +      + I   ++  +SS      NEG
Sbjct: 514 KPNTVVYHSLIQGFCTHGDLIKAKELVSEMMD------QGIPRPNITFFSSIIHSLCNEG 567

Query: 180 DDDDDDEVFEKLLP----------NS-INPSSEPPLLPKTFA-----------PNSRIYT 217
              +  +VF  ++           NS I+       + K F            P+   Y+
Sbjct: 568 RVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYS 627

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TL+ GY   GR+ D + +    R        P  VTY+ V+  L +AG    A+++  EM
Sbjct: 628 TLINGYFKSGRIDDGLILF---REMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEM 684

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILID 336
              G   +  TY I+L+G C+    D+A  L  ++ A + K E  ++  N +I     + 
Sbjct: 685 IESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAIL--NTMIHALYKVK 742

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
               A   F  + A G+ P   +Y  ++         + A+ +F  M
Sbjct: 743 RREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSM 789


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 212/455 (46%), Gaps = 38/455 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G +P V +++++++ L   G    V E++ LF+V+ K            D++P+++ YN 
Sbjct: 215 GCIPSVVSFNSILTCL---GKKRKVDEALSLFEVMKK------------DAEPNSSTYNI 259

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++     G+ ++  ++ D+M      P++LT N+M+    +A +      + E   + G
Sbjct: 260 IIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG 319

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
                 T+ SL+      G ++ A  + + M +   +   ++    + ++     G  +D
Sbjct: 320 CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI--HGRKED 377

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMRRQ 242
             +VF++L+     P  +  LL      N+ +      G + +GR + + +R  G +   
Sbjct: 378 GHKVFKELIRRGCKP--DLTLL------NTYMDCVFKAGEVEKGRMIFEDIRSYGFL--- 426

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD  +Y+ ++  L KAG       +   M + G   +   YN ++ G+C+  ++
Sbjct: 427 ------PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV 480

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            KA E+L EM +   ++P V +Y  ++DG   ID    A   F E +++GI    + Y++
Sbjct: 481 HKAYEILEEMKEKC-VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSS 539

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  F    +   A  + +EM++   +  ++  WN L++   +   + EA    + MKE 
Sbjct: 540 LIDGFGKVGRIDEAYLILEEMMKKG-LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEM 598

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              PN  TY  L NG+   +K  +A + W++++++
Sbjct: 599 KCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ 633



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 123/568 (21%), Positives = 224/568 (39%), Gaps = 82/568 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   GY   V  ++T+V  LA  G     +++ L D V             S  +PD   
Sbjct: 71  MQEVGYEVGVHLFTTLVRALAREGQ--VADALALVDEVKG-----------SCLEPDIVL 117

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN  ++     G      + F ++   G KPD ++Y  MI +  +A R      +  ++ 
Sbjct: 118 YNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME 177

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                 C   + +++  Y   G  E A  +++ +RE  R     +   +        +  
Sbjct: 178 AERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRE--RGCIPSVVSFNSILTCLGKKRK 235

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM- 239
            D+   +FE              ++ K   PNS  Y  ++      GRV +  R+L  M 
Sbjct: 236 VDEALSLFE--------------VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEME 281

Query: 240 ---------------------RRQED----------NASHPDHVTYTTVVSALVKAGSMD 268
                                R+ E+             +PD VTY +++  L K G +D
Sbjct: 282 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 341

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A ++  +M   G  AN + Y  L++ +    + +   ++ +E+      +PD+   N  
Sbjct: 342 EAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRG-CKPDLTLLNTY 400

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +D      +       F ++R+ G  P   SY+ L+     + Q +  + +F  M +   
Sbjct: 401 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM-KQQG 459

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
             +D  A+N +V+G+C+ G V +A  I+E MKE    P VATYG++ +G++   +  EA 
Sbjct: 460 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAY 519

Query: 449 LLWKEIKER-------------------CEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           +L++E K +                     + +  +  +  +   L P+    ++L D  
Sbjct: 520 MLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 579

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKY 517
           V+A    +AL     M+E   PPN   Y
Sbjct: 580 VKAEEINEALVCFQSMKEMKCPPNTYTY 607



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 5/244 (2%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ D V  +  MRR +     P    YT ++ AL +A   +RA ++L +M  +G      
Sbjct: 25  RLDDAVLAVAVMRRLK---FRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVH 81

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            +  L++   ++ Q+  A  L+ E+     +EPD+V YN+ ID F    +   A  FF+E
Sbjct: 82  LFTTLVRALAREGQVADALALVDEVKGSC-LEPDIVLYNVCIDCFGKAGNVDMACKFFHE 140

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           ++A+G+ P  +SYT+++     + +   A ++F +M  +  V     A+N ++ GY   G
Sbjct: 141 LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPC-AYAYNTMIMGYGSAG 199

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
             E+A +++ER++E G  P+V ++ S+   +   RK  EAL L++ +K+  E      N 
Sbjct: 200 RFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNI 259

Query: 468 DSDL 471
             D+
Sbjct: 260 IIDM 263



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 109/490 (22%), Positives = 203/490 (41%), Gaps = 73/490 (14%)

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M     +P    Y V+I   A A R    + +L ++ E+G  + +  F +LV A    G 
Sbjct: 36  MRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQ 95

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF-----EKLLPNSINP 198
           +  A  +V  ++    +   ++  + ++ +     G+ D   + F     + L P+ ++ 
Sbjct: 96  VADALALVDEVKGSCLEPDIVLYNVCIDCFG--KAGNVDMACKFFHELKAQGLKPDDVSY 153

Query: 199 SSEPPLLPKT---------FA--------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMR- 240
           +S   +L K          FA        P +  Y T++ GY + GR  D  ++L  +R 
Sbjct: 154 TSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRE 213

Query: 241 --------------------RQEDNA----------SHPDHVTYTTVVSALVKAGSMDRA 270
                               R+ D A          + P+  TY  ++  L   G ++ A
Sbjct: 214 RGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEA 273

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EM    +  N +T NI++   C+  ++++A ++  E A      PD V+Y  LID
Sbjct: 274 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF-ESASQRGCNPDCVTYCSLID 332

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A   F +M   G     + YT+L++ F +  + +  +KVF E++R    K
Sbjct: 333 GLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRG-CK 391

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+   N  ++   + G VE+ + I E ++  GF P+V +Y  L +G++ A +  E   +
Sbjct: 392 PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 451

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           +  +K++                    D    +A+ D   ++    KA EI+  M+E  +
Sbjct: 452 FHAMKQQ----------------GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 495

Query: 511 PPNKTKYKKI 520
            P    Y  I
Sbjct: 496 QPTVATYGAI 505


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 212/455 (46%), Gaps = 38/455 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G +P V +++++++ L   G    V E++ LF+V+ K            D++P+++ YN 
Sbjct: 83  GCIPSVVSFNSILTCL---GKKRKVDEALSLFEVMKK------------DAEPNSSTYNI 127

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++     G+ ++  ++ D+M      P++LT N+M+    +A +      + E   + G
Sbjct: 128 IIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG 187

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
                 T+ SL+      G ++ A  + + M +   +   ++    + ++     G  +D
Sbjct: 188 CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI--HGRKED 245

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMRRQ 242
             ++F++L+     P  +  LL      N+ +      G + +GR + + +R  G +   
Sbjct: 246 GHKIFKELIRRGCKP--DLTLL------NTYMDCVFKAGEVEKGRMIFEDIRSYGFL--- 294

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD  +Y+ ++  L KAG       +   M + G   +   YN ++ G+C+  ++
Sbjct: 295 ------PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV 348

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            KA E+L EM +   ++P V +Y  ++DG   ID    A   F E +++GI    + Y++
Sbjct: 349 HKAYEILEEMKEKC-VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSS 407

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  F    +   A  + +EM++   +  ++  WN L++   +   + EA    + MKE 
Sbjct: 408 LIDGFGKVGRIDEAYLILEEMMKKG-LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEM 466

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              PN  TY  L NG+   +K  +A + W++++++
Sbjct: 467 KCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ 501



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 128/314 (40%), Gaps = 22/314 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L  +   P+   YT+++      GR+ +   +   M   E   S P    Y T++     
Sbjct: 9   LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQM---EAERSVPCAYAYNTMIMGYGS 65

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG  + A ++L  +   G   + +++N +L    ++ ++D+A  L   M  DA  EP+  
Sbjct: 66  AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA--EPNSS 123

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YNI+ID   L      A    +EM    + P  ++   ++     + + + A K+F E 
Sbjct: 124 TYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF-ES 182

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                   D V +  L++G  + G V+EA R+ E+M + G   N   Y SL     +  +
Sbjct: 183 ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGR 242

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +   ++KE+  R                  KPD  LL+   D   +A    K   I  
Sbjct: 243 KEDGHKIFKELIRR----------------GCKPDLTLLNTYMDCVFKAGEVEKGRMIFE 286

Query: 504 CMEEHGIPPNKTKY 517
            +  +G  P+   Y
Sbjct: 287 DIRSYGFLPDVRSY 300



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 18/173 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A  FF+E++A+G+ P  +SYT+++     + +   A ++F +M  +  V     A+N ++
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPC-AYAYNTMI 60

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            GY   G  E+A +++ER++E G  P+V ++ S+   +   RK  EAL L++ +K+  E 
Sbjct: 61  MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE- 119

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                           P+    + + D+        +A  I+  ME   + PN
Sbjct: 120 ----------------PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 156


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 209/493 (42%), Gaps = 85/493 (17%)

Query: 27  GPVESVKLFDVVVKRVRKFSDPDIVSD---------SKPDTAAYNAVLNACANLGKPKKF 77
           G   +V  F +V+K +  F++ D               P++  Y  +++A +   +  + 
Sbjct: 213 GVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEA 272

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+L ++M   G  PDV T+N +I    + ++ H    +++R+L  G      T+  L+  
Sbjct: 273 LKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHG 332

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKI------IRELDLEDYSSENEGDDDDDDEVFEKL 191
               G L           E R+ + KI      I    +  Y     G   +      + 
Sbjct: 333 LCRIGKLN----------EARKILIKIPCPNNAILNTLINGYVMS--GQLKEAQSFLNET 380

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
           + N              F P+   Y  LM G   EG +S    ++  M R+      P+ 
Sbjct: 381 MINF------------GFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR---GCEPNV 425

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           +TY  +V+ L KAG ++ A  VL EM+  G+  N + YN L+   C++ ++  A  LL E
Sbjct: 426 ITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSE 485

Query: 312 MADDAKIEPDVVSYNILIDGF---------------ILIDDSAG---------------- 340
           M      +PD+ +YN LI G                +L+D +                  
Sbjct: 486 MCTKG-CKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRG 544

Query: 341 ----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               ALT  N+M  RG    KI+Y  L+KAF      +   +++++M+ D  +  D ++ 
Sbjct: 545 AFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDG-LGADTISC 603

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N+++ G C++G V+ A   +      GF P++ TY S+ NG+    +  EAL L+    +
Sbjct: 604 NIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLF----D 659

Query: 457 RCEVKKEGVNADS 469
           R +V  EGV  D+
Sbjct: 660 RLQV--EGVRPDA 670



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 29/385 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQ-MHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           P+ A  N ++N     G+ K+     ++ M  FG +PD+ TYN+++  LC   S    L 
Sbjct: 352 PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS----LS 407

Query: 114 FVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
           F  + + EM    C   + T+  LV      G LE A  ++  M      +  +I    +
Sbjct: 408 FARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLI 467

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                +      +   V   LL        +P L    F  NS IY     G     R+ 
Sbjct: 468 CALCRK------EKVHVALNLLSEMCTKGCKPDL----FTYNSLIY-----GLCKVDRID 512

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  R+   M     + +  ++VTY T++ AL++ G+  +A  ++ +M   G   ++ITYN
Sbjct: 513 EAFRLFHNMLL---DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYN 569

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+K +C+   I+K  EL  +M  D  +  D +S NI+I+G   +     A  F  +   
Sbjct: 570 GLIKAFCKVGNIEKGLELYEQMIMDG-LGADTISCNIMINGLCKVGKVDNAFEFLRDAIN 628

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RG  P  ++Y +++       + K A  +FD  L+   V+ D   +N  +   C+ G+V 
Sbjct: 629 RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDR-LQVEGVRPDAFTYNTFISWQCKEGMVN 687

Query: 411 EAKRIIERMKENGFYPNVATYGSLA 435
           +A     R  ENGF P+  T+  L 
Sbjct: 688 DACSFFYRGIENGFVPSNLTWNVLV 712



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 14/257 (5%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L K  +P    +  +MK       V     +L   R    +   P+ + Y T++ AL +
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLL---RDMTKHGCVPNSIVYQTLIHALSQ 265

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +  A ++L EM  +G   +  T+N ++ G C+  +I  A +L+  M       PD +
Sbjct: 266 KNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRG-FYPDNM 324

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGI---APTKISYTTLMKAFALSSQPKLANKVF 380
           +Y  L+ G   I          NE R   I    P      TL+  + +S Q K A    
Sbjct: 325 TYGFLLHGLCRIGK-------LNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFL 377

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +E + +   + DI  +N+L+ G C+ G +  A+ ++  M   G  PNV TY  L NG+  
Sbjct: 378 NETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCK 437

Query: 441 ARKPGEALLLWKEIKER 457
           A    EA L+  E+  R
Sbjct: 438 AGLLEEAGLVLHEMSAR 454



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 34/229 (14%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
            Y   ++ L   G      ++L +M   G+      + I++K Y +  Q  +A  LL +M
Sbjct: 114 VYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                 EP   SY+++++  +  +    A   F +M ++G++PT  ++  +MKA  + ++
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNE 233

Query: 373 PKLANKVFDEMLRDPRVKVDIV----------------------------------AWNM 398
              A  +  +M +   V   IV                                   +N 
Sbjct: 234 VDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFND 293

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           ++ G C++  + +A ++++RM   GFYP+  TYG L +G+    K  EA
Sbjct: 294 VIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA 342



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 18/246 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            KPD   YN+++     + +  +  +LF  M   GA  + +TYN +I    R       +
Sbjct: 491 CKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKAL 550

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            ++  +L  G TL   T+  L+ A+   G++E    + + M         I   + +   
Sbjct: 551 TLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGL 610

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               + D+      FE  L ++IN         + F P+   Y +++ G    GR+ + +
Sbjct: 611 CKVGKVDN-----AFE-FLRDAIN---------RGFVPDIVTYNSVLNGLCKVGRIKEAL 655

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +     R +     PD  TY T +S   K G ++ A          G   + +T+N+L+
Sbjct: 656 NLF---DRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLV 712

Query: 294 KGYCQQ 299
               +Q
Sbjct: 713 YTLLKQ 718


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 176/383 (45%), Gaps = 18/383 (4%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   Y+ +++   + G   +   LFD+M E G  P+V+ Y+ +I    +         VL
Sbjct: 79  DVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVL 138

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             + E GI   + T+  ++      G    A  +   M E   +   +   + +      
Sbjct: 139 HTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLC-- 196

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            EG   D  ++FE +L              K     S  Y TL+ G  N G++ + +++ 
Sbjct: 197 KEGCIGDAFKIFETMLEKG-----------KRLEVVS--YNTLIMGLCNNGKLDEAMKLF 243

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            ++  ++ N   PD +T+ TV+  L K G +D+A ++   M   G   N  T +IL+  Y
Sbjct: 244 SSLL-EDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEY 302

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            +   IDKA EL + +     + P   +Y+++IDGF  +     A   F+ M+  G++PT
Sbjct: 303 IKSGIIDKAMELWKRVHKLGLV-PSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPT 361

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
              Y TLM +    S  + A ++F EM ++   + D +++N++++G  + G +  AK ++
Sbjct: 362 LFDYNTLMASLCKESSLEQARRLFQEM-KESNCEPDTISFNIMIDGTLKAGDIHSAKELL 420

Query: 417 ERMKENGFYPNVATYGSLANGIS 439
             M++ G  P+  TY S  N +S
Sbjct: 421 NDMQQMGLTPDAYTYSSFINRLS 443



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y T++ G   E R+   V +L  M   E ++  P+  TY  ++  L K G ++ A
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEM---EGSSCEPNSFTYCILMDGLCKEGRVEEA 64

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EM R G+  + + Y+ L+ G+C +  +D+ K L  EM +   I P+VV Y+ LI+
Sbjct: 65  MRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKG-ISPNVVVYSCLIN 123

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           GF        A    + M  RGI P   +YT ++       + + A  +FD ++ +   +
Sbjct: 124 GFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFD-LMTEKGEE 182

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
              V +N+L+ G C+ G + +A +I E M E G    V +Y +L  G+    K  EA+ L
Sbjct: 183 PSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKL 242

Query: 451 WKEIKE 456
           +  + E
Sbjct: 243 FSSLLE 248



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 179/424 (42%), Gaps = 33/424 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P+V  +S +++     G         L+      +   ++  I    +PD   
Sbjct: 106 MLEKGISPNVVVYSCLINGFCKKG---------LWREATAVLHTMTERGI----QPDVYT 152

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++      G+ +K L LFD M E G +P  +TYNV+I  LC           + E +
Sbjct: 153 YTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFK-IFETM 211

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           LE G  L + ++ +L+      G L+ A  +  ++ E    V   +   +        EG
Sbjct: 212 LEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEG 271

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             D   E+++ ++               +F  N      L+  Y+  G +   + +    
Sbjct: 272 RLDKAVEIYDTMIERG------------SFG-NLFTCHILIGEYIKSGIIDKAMEL---W 315

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +R       P   TY+ ++    K   ++ A+ + + M   G+      YN L+   C++
Sbjct: 316 KRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKE 375

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +++A+ L +EM + +  EPD +S+NI+IDG +   D   A    N+M+  G+ P   +
Sbjct: 376 SSLEQARRLFQEMKE-SNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYT 434

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y++ +   +   Q + A   FD M+    +  D   ++ L++G+     +EE   ++ +M
Sbjct: 435 YSSFINRLSKLGQMEEAKGAFDSMIASG-ITPDNHVYDSLIKGFGLNDEIEEVINLLRQM 493

Query: 420 KENG 423
            + G
Sbjct: 494 ADMG 497



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/464 (19%), Positives = 193/464 (41%), Gaps = 38/464 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YN ++N      + +K + L  +M     +P+  TY +++    +  R    + +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +   G+ + +  + +L++ +   G L+  + +   M E       ++    +  +  
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFC- 126

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   +   V   +    I P             +   YT ++ G   +GR    + +
Sbjct: 127 -KKGLWREATAVLHTMTERGIQP-------------DVYTYTCMIGGLCKDGRARKALDL 172

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +      P  VTY  +++ L K G +  A ++   M   G     ++YN L+ G
Sbjct: 173 FDLMTEK---GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMG 229

Query: 296 YCQQLQIDKAKELLREMADDAK-IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            C   ++D+A +L   + +D   +EPDV+++N +I G         A+  ++ M  RG  
Sbjct: 230 LCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSF 289

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
               +   L+  +  S     A +++  + +   V      ++++++G+C+M ++  AK 
Sbjct: 290 GNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSS-TTYSVMIDGFCKMHMLNFAKG 348

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGVNADSDLPP 473
           +  RMK +G  P +  Y +L   +       +A  L++E+KE  CE              
Sbjct: 349 LFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCE-------------- 394

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              PD    + + D  ++A     A E++  M++ G+ P+   Y
Sbjct: 395 ---PDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTY 435



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 98/183 (53%), Gaps = 2/183 (1%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M RI +  + ++YN ++ G C++ +++KA +LL EM + +  EP+  +Y IL+DG     
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEM-EGSSCEPNSFTYCILMDGLCKEG 59

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A+    EM+ +G+    + Y+TL+  F           +FDEML +  +  ++V +
Sbjct: 60  RVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEML-EKGISPNVVVY 118

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           + L+ G+C+ GL  EA  ++  M E G  P+V TY  +  G+    +  +AL L+  + E
Sbjct: 119 SCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTE 178

Query: 457 RCE 459
           + E
Sbjct: 179 KGE 181



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 61/341 (17%), Positives = 134/341 (39%), Gaps = 44/341 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G    V +++T++  L  +G     E++KLF  +++      D + V   +PD   
Sbjct: 211 MLEKGKRLEVVSYNTLIMGLCNNGKLD--EAMKLFSSLLE------DGNYV---EPDVIT 259

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N V+      G+  K ++++D M E G+  ++ T +++I    ++      + + +R+ 
Sbjct: 260 FNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVH 319

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR---------EGRRDVCKIIRELDLE 171
           ++G+    TT+  ++  +     L  A+ +   M+         +    +  + +E  LE
Sbjct: 320 KLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLE 379

Query: 172 D----YSSENEGDDDDDDEVFEKLLPNSI------------NPSSEPPLLPKTFAPNSRI 215
                +    E + + D   F  ++  ++            N   +  L P  +  +S I
Sbjct: 380 QARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFI 439

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
                 G M E +        GA      +   PD+  Y +++        ++    +L 
Sbjct: 440 NRLSKLGQMEEAK--------GAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLR 491

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           +M  +GV  +    N +L   C   +     ELL   + ++
Sbjct: 492 QMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFSSES 532


>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
 gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
          Length = 500

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 142/263 (53%), Gaps = 21/263 (7%)

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
           S  PP       PN   + +L+       R+ D  R L  M    D   HPD VT+T ++
Sbjct: 4   SGTPP-------PNQHAFASLIDALSKSNRLGDAARALELM---CDAGIHPDVVTFTALI 53

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRIT-----YNILLKGYCQQLQIDKAKELLREMA 313
               K   ++RA ++  EM    + +NR       Y +L+ GYC++L++D+A ELLREM 
Sbjct: 54  RGFCKNRMVERAWEIFQEM----IKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMR 109

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSSQ 372
            + +I+PDVV YN ++DG    +    A  F +E   R G +PT ++YT+L++    + +
Sbjct: 110 VERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKK 169

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            KLA  +++ ML + +++  IV+++++++G  + G V +A R++  M+  G   NV  Y 
Sbjct: 170 MKLAMTIWNAML-ERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYT 228

Query: 433 SLANGISLARKPGEALLLWKEIK 455
           +L +G+  +    +A  L++ +K
Sbjct: 229 TLIDGLCKSGFLDDAYALYRIMK 251



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 150/338 (44%), Gaps = 38/338 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQ----LFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           +PD   YN++++    L +  +FL+    L + M   G  P V+TY  +I+   +A +  
Sbjct: 115 QPDVVIYNSIVDG---LCRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMK 171

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
           L + +   +LE  I   + ++  ++      G +  A  +V+ M         +  EL++
Sbjct: 172 LAMTIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREME-------TLGCELNV 224

Query: 171 EDYSSENEGDDD----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
             Y++  +G       DD     +++  S             F PN R Y TL+  +   
Sbjct: 225 VIYTTLIDGLCKSGFLDDAYALYRIMKRS-----------GAF-PNQRTYATLIDTFCRN 272

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            R    + +   +R    +    D   YT VVS L +   +D AR +  EM   GV A+ 
Sbjct: 273 DRTETALGLFDHIR----DYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADT 328

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
             YN+LL G  +  + ++A  +L E+ DD     ++++YN +I G  L       +  F 
Sbjct: 329 HAYNVLLHGAFRSGRSEEAFRILEELGDDPGCVANLLTYNTVIAGCCL----ESGMVLFY 384

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           EMR RGIAP   +Y+ L+     S + + A  + +EML
Sbjct: 385 EMRQRGIAPDFATYSALIDRLLGSGEIRRAFDLCEEML 422



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 156/385 (40%), Gaps = 61/385 (15%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASR-KHL 111
            +PD   Y  +++      +  + L+L  +M  E   +PDV+ YN ++    R++R    
Sbjct: 78  CQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEA 137

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
             F+ E ++  G +  + T+ SL+        +++A TI  AM E               
Sbjct: 138 WKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLE--------------- 182

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                             K+ P  ++                  Y+ ++ G    GRV D
Sbjct: 183 -----------------RKIQPTIVS------------------YSVIIDGLSKAGRVYD 207

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             R++   R  E      + V YTT++  L K+G +D A  +   M R G   N+ TY  
Sbjct: 208 AYRVV---REMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYAT 264

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+  +C+  + + A  L   + D   +  DV  Y  ++ G         A   F EMR  
Sbjct: 265 LIDTFCRNDRTETALGLFDHIRDYCPL--DVAMYTAVVSGLCRERRLDDARALFREMRLA 322

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G++    +Y  L+     S + + A ++ +E+  DP    +++ +N ++ G C    +E 
Sbjct: 323 GVSADTHAYNVLLHGAFRSGRSEEAFRILEELGDDPGCVANLLTYNTVIAGCC----LES 378

Query: 412 AKRIIERMKENGFYPNVATYGSLAN 436
              +   M++ G  P+ ATY +L +
Sbjct: 379 GMVLFYEMRQRGIAPDFATYSALID 403



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 18/168 (10%)

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P + ++ +L+ A + S++   A +   E++ D  +  D+V +  L+ G+C+  +VE A  
Sbjct: 9   PNQHAFASLIDALSKSNRLGDAARAL-ELMCDAGIHPDVVTFTALIRGFCKNRMVERAWE 67

Query: 415 IIERM-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           I + M K N   P+   YG L +G     +   AL L +E++    V++           
Sbjct: 68  IFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMR----VERR---------- 113

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIV-ACMEEHGIPPNKTKYKKI 520
            ++PD  + +++ D   R+  F +A + +   M   G  P    Y  +
Sbjct: 114 -IQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVRQGCSPTVVTYTSL 160


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 203/468 (43%), Gaps = 68/468 (14%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           ++A+ A++ A ++ G+    +Q F +M EF ++P    YN ++K    +    L + +  
Sbjct: 137 SSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYN 196

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           R++  G      T+  L+                         +CK              
Sbjct: 197 RMVAAGCAPNRATYNVLMDG-----------------------LCK-------------- 219

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +G   D  ++F+++L   I              PN +IYT L+    N G++ + V++LG
Sbjct: 220 QGMAGDALKMFDEMLDRGI-------------MPNVKIYTVLLSSLCNAGKIDEAVQLLG 266

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           +M+   D    PD VTY   +S L K G ++ A Q L  +   G       Y+ L+ G  
Sbjct: 267 SMK---DKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLF 323

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           Q  + D+     + M +   I PDVV Y I+I G         AL+F + M+ +G  P  
Sbjct: 324 QARRFDEGFGYYKTMLER-NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDT 382

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             Y T++K        + A+ +  EML++  V +D     +++ G C+ GLV+EA +I +
Sbjct: 383 FCYNTVLKVLCDHGDLERAHTLRSEMLQNNLV-LDSTTQTIMICGLCKRGLVDEAMQIFD 441

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
            M E+G  P V TY +L +G     +  EA +L+ ++       + G N    L   L  
Sbjct: 442 EMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKM-------EMGNNPSLFLRLTLGA 494

Query: 478 D-----EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +     E L   + D+C ++    KA +++  + + G+ P+   Y  +
Sbjct: 495 NQVCDSESLRKLVHDMC-QSGQVLKAYKLLRSIIDSGVVPDVVTYNTL 541



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 189/423 (44%), Gaps = 39/423 (9%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +   P+ A YN +++     G     L++FD+M + G  P+V  Y V++     A + 
Sbjct: 199 VAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
              V +L  + + G      T+ + ++     G +  A   +  +++G          L 
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGG-------FALG 311

Query: 170 LEDYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           L+ YS   +G       DE F               +L +  +P+  +YT +++G    G
Sbjct: 312 LKGYSCLIDGLFQARRFDEGF----------GYYKTMLERNISPDVVLYTIMIRGCAEAG 361

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ D +  L  M+++      PD   Y TV+  L   G ++RA  + +EM +  +  +  
Sbjct: 362 RIEDALSFLDVMKKK---GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDST 418

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           T  I++ G C++  +D+A ++  EM +    +P V++YN LIDGF        A   F++
Sbjct: 419 TQTIMICGLCKRGLVDEAMQIFDEMGEHG-CDPTVMTYNALIDGFYREGRLEEARMLFHK 477

Query: 348 MRARGIAPTKI--------------SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           M   G  P+                S   L+     S Q   A K+   ++ D  V  D+
Sbjct: 478 MEM-GNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSII-DSGVVPDV 535

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L+ G C+   ++ A R+ + ++  G  P+  TYG+L +G+  A +  +A++L++ 
Sbjct: 536 VTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQN 595

Query: 454 IKE 456
           I +
Sbjct: 596 ILQ 598



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 124/309 (40%), Gaps = 56/309 (18%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +S  +  L+  + + GR +D V+   A  R ++  S P    Y T++ ALV +G +  A 
Sbjct: 136 SSSAFAALVAAHSSAGRNADAVQ---AFSRMDEFQSRPTAFVYNTILKALVDSGVILLAL 192

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +   M   G   NR TYN+L+ G C+Q            MA DA               
Sbjct: 193 ALYNRMVAAGCAPNRATYNVLMDGLCKQ-----------GMAGDA--------------- 226

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                     L  F+EM  RGI P    YT L+ +   + +   A ++   M +D     
Sbjct: 227 ----------LKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM-KDKGCLP 275

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V +N  + G C++G V EA + +  +++ GF   +  Y  L +G+  AR+  E    +
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           K + ER                 + PD  L   +   C  A     AL  +  M++ G  
Sbjct: 336 KTMLER----------------NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFV 379

Query: 512 PNKTKYKKI 520
           P+   Y  +
Sbjct: 380 PDTFCYNTV 388



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           K +R   D  +V    PD   YN ++N           ++LF ++   G  PD +TY  +
Sbjct: 521 KLLRSIIDSGVV----PDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTL 576

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           I    RA R++  + + + IL+ G +  ++ + S++
Sbjct: 577 IDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMM 612


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 18/278 (6%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           + N   PD +T+ ++++   + G  + AR +  EMT   +  +  +YN LL   C+  Q+
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQM 390

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D A E+L +M    +I P+VVSY+ +IDGF        AL  F EMR  GIA  ++SY T
Sbjct: 391 DLAFEILAQMPVK-RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNT 449

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  +    + + A  +  EM     +K D+V +N L+ GY + G  +E K++   MK  
Sbjct: 450 LLSIYTKVGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE 508

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
              PN+ TY +L +G S      EA+ +++E K                   L+ D  L 
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKS----------------AGLRADVVLY 552

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            AL D   +      A+ ++  M + GI PN   Y  I
Sbjct: 553 SALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSI 590



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 168/376 (44%), Gaps = 56/376 (14%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF-VLER 118
           A++A+++A    G  ++ + +F+ M E+G +P+++TYN +I  C +   +   V    + 
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +   G+     TF SL+A     G  E A  +   M   R                    
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR-------------------- 369

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                + +VF                           Y TL+      G++     +L  
Sbjct: 370 ----IEQDVFS--------------------------YNTLLDAICKGGQMDLAFEILAQ 399

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  +      P+ V+Y+TV+    KAG  D A  +  EM  +G+  +R++YN LL  Y +
Sbjct: 400 MPVKR---IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTK 456

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             + ++A ++LREMA    I+ DVV+YN L+ G+            F EM+   + P  +
Sbjct: 457 VGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLL 515

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y+TL+  ++     K A ++F E  +   ++ D+V ++ L++  C+ GLV  A  +I+ 
Sbjct: 516 TYSTLIDGYSKGGLYKEAMEIFRE-FKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574

Query: 419 MKENGFYPNVATYGSL 434
           M + G  PNV TY S+
Sbjct: 575 MTKEGISPNVVTYNSI 590



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 180/402 (44%), Gaps = 69/402 (17%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY   V A+S ++S    SG     E++ +F+ + +              +P+   YNAV
Sbjct: 263 GYGNTVYAFSALISAYGRSGLH--EEAISVFNSMKEY-----------GLRPNLVTYNAV 309

Query: 65  LNACANLG-KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++AC   G + K+  + FD+M   G +PD +T+N ++ +C+R         + + +    
Sbjct: 310 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR 369

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I   + ++ +L+ A    G +++A  I+  M                             
Sbjct: 370 IEQDVFSYNTLLDAICKGGQMDLAFEILAQM----------------------------- 400

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                ++++PN ++                  Y+T++ G+   GR  + + + G MR   
Sbjct: 401 ---PVKRIMPNVVS------------------YSTVIDGFAKAGRFDEALNLFGEMRYL- 438

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                 D V+Y T++S   K G  + A  +L EM  +G+  + +TYN LL GY +Q + D
Sbjct: 439 --GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           + K++  EM  +  + P++++Y+ LIDG+        A+  F E ++ G+    + Y+ L
Sbjct: 497 EVKKVFTEMKRE-HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSAL 555

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
           + A   +     A  + DEM ++  +  ++V +N +++ + R
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGR 596



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 114/253 (45%), Gaps = 22/253 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  +YN +L+A    G+     ++  QM      P+V++Y+ +I   A+A R    + + 
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLF 432

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDYS 174
             +  +GI L   ++ +L++ Y   G  E A  I++ M     ++DV  +     L  Y 
Sbjct: 433 GEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDV--VTYNALLGGYG 490

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G  D+  +VF ++    +              PN   Y+TL+ GY   G   + + 
Sbjct: 491 --KQGKYDEVKKVFTEMKREHV-------------LPNLLTYSTLIDGYSKGGLYKEAME 535

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +    R  +      D V Y+ ++ AL K G +  A  ++ EMT+ G+  N +TYN ++ 
Sbjct: 536 IF---REFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592

Query: 295 GYCQQLQIDKAKE 307
            + +   +D++ +
Sbjct: 593 AFGRSATMDRSAD 605



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           + A++ L+  Y R GL EEA  +   MKE G  PN+ TY ++ +        G+  + +K
Sbjct: 268 VYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDAC------GKGGMEFK 321

Query: 453 EIKERC-EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           ++ +   E+++ GV          +PD    ++L  +C R   +  A  +   M    I 
Sbjct: 322 QVAKFFDEMQRNGV----------QPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIE 371

Query: 512 PNKTKYKKI 520
            +   Y  +
Sbjct: 372 QDVFSYNTL 380


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 197/463 (42%), Gaps = 36/463 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    Y  +++  A  G        F+ M     KP+V  Y  +I   A A      V 
Sbjct: 128 KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 187

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             E +L  GI L    F S+++ Y   G+ E AE   +  +        I+    ++ Y 
Sbjct: 188 CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYC 247

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                    + E  E LL           +  + F  N  +YTT++ G+     + D  +
Sbjct: 248 QAG------NMETVEALLAQ---------MEEEGFQGNLGLYTTVLNGF---AEIRDEEK 289

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            L    R +     P   TY  +V    KAG+M +A  +L EM + GV  N++ Y +++ 
Sbjct: 290 CLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMD 349

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GY +      A ++  +M   A ++PD+V+YNIL+  F        AL     ++A  + 
Sbjct: 350 GYARGGDFTAAFKVWEDMVS-AGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLL 408

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT  +YT+++  +      + A +VFD  ++   ++  +V++N L+ G  +   +E A+ 
Sbjct: 409 PTIETYTSILDGYVKGGHIQKALEVFDR-IKTAGLRPGVVSYNSLLSGLAKARQMENARL 467

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +++ M  NG  PN  +Y +L  G + A    +A  +++ +K+                  
Sbjct: 468 MLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKE----------------N 511

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           L  D     AL   C ++   ++A+E+   + + G+  N+  Y
Sbjct: 512 LAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITY 554



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 192/434 (44%), Gaps = 33/434 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G   +   + +++S  A++G++   E             KF   ++V    P    
Sbjct: 192 MLSQGIQLNEAVFCSIISGYASAGNNEAAE---------HWFEKFKAENLV----PGGIV 238

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++ A    G  +    L  QM E G + ++  Y  ++   A    +   +    R+ 
Sbjct: 239 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 298

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G++    T+  +V  +   G++  A  I++ M +      K+I  + ++ Y+    GD
Sbjct: 299 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYA--RGGD 356

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                +V+E ++   + P             +   Y  L+  +   GR+    + LG + 
Sbjct: 357 FTAAFKVWEDMVSAGLKP-------------DIVTYNILVHAFCKAGRMD---KALGVLE 400

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             + N   P   TYT+++   VK G + +A +V   +   G+    ++YN LL G  +  
Sbjct: 401 NIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKAR 460

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q++ A+ +L EM  +  + P+  SY  L +G+    D   A   F  M+   +A   ++Y
Sbjct: 461 QMENARLMLDEMLANGVV-PNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAY 519

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S   + A +VF + + D  +K + + +  +++G+ R G + +A+ +++ M+
Sbjct: 520 GALLKACCKSGAMQRAVEVFQQ-ITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQ 578

Query: 421 ENGFYPNVATYGSL 434
           ++GF+ +   Y S 
Sbjct: 579 KHGFHLDTICYTSF 592



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 22/348 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  +++  A  G      ++++ M   G KPD++TYN+++    +A R    + V
Sbjct: 339 PNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGV 398

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYS 174
           LE I    +   + T+ S++  YV  G ++ A  +   ++  G R          +  Y+
Sbjct: 399 LENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRP--------GVVSYN 450

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S   G          +L+ +         +L     PN R YT L +GY    R  D  +
Sbjct: 451 SLLSGLAKARQMENARLMLDE--------MLANGVVPNERSYTALTEGY---ARAGDVEK 499

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
             G  +R +      D V Y  ++ A  K+G+M RA +V  ++T  G+  NRITY  +L 
Sbjct: 500 AFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLD 559

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ ++ ++ KA++LL++M        D + Y   I       D+         MR + + 
Sbjct: 560 GWARKGELSKARDLLKDMQKHG-FHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLE 618

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
               +YTTL+  +  ++ P  A   + E  +   +++D    N L+ G
Sbjct: 619 VNARTYTTLIHGWLAAADPDQAISCY-EQAKASGLQLDSALSNCLLSG 665



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
           + I+P+V  Y  LI  +    D  GA+    EM ++GI   +  + +++  +A +   + 
Sbjct: 160 SHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEA 219

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A   F++   +  V   IV +N +V+ YC+ G +E  + ++ +M+E GF  N+  Y ++ 
Sbjct: 220 AEHWFEKFKAENLVPGGIV-YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVL 278

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           NG +  R   + L  +  +K                   L P       +  +  +A   
Sbjct: 279 NGFAEIRDEEKCLSFFHRLK----------------ACGLSPTAATYGCIVKLFTKAGNM 322

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            KAL+I+  M++HG+ PNK  Y  I
Sbjct: 323 AKALDILEEMDKHGVSPNKMIYAMI 347



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G +P+ ++++ +    A +GD   VE  K F +  +R++K        +   D  A
Sbjct: 472 MLANGVVPNERSYTALTEGYARAGD---VE--KAFGMF-QRMKK-------ENLAIDIVA 518

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+L AC   G  ++ +++F Q+ + G K + +TY  M+   AR         +L+ + 
Sbjct: 519 YGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQ 578

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
           + G  L    + S + A    GD E     +  MRE + +V
Sbjct: 579 KHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEV 619


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 192/485 (39%), Gaps = 75/485 (15%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +P T  Y  ++ A  ++G   K +++ D+M      P+V TY ++I    R  +     
Sbjct: 296 CQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEAN 355

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V  ++L+ G+   + TF +L+  Y   G +  A  ++  M +G    CK          
Sbjct: 356 GVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN---CK---------- 402

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                                PN R Y  LM+G     RVS + 
Sbjct: 403 -------------------------------------PNIRTYNELMEGLC---RVSKSY 422

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +    +RR  DN   PD VTY  +V    K G ++ A  +   M   G+  +  T+  L+
Sbjct: 423 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 482

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++++A  +L  M     I  D V++  LIDG   I  +      F  M     
Sbjct: 483 DGLCKLGRLEQANGILGSMVKKG-ISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 541

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             T  ++   + A     +   AN +  +M++   V   +V   +L+EG+CR G    + 
Sbjct: 542 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVP-SVVTHTILIEGHCRAGETALSL 600

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           +++ERMK+ G  PNV TY  + NG+    +  EA  +   +         GV+       
Sbjct: 601 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF------GVS------- 647

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
              P+      L    V+A    +A +IV+ M ++G  PN      IY  + S    S  
Sbjct: 648 ---PNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN----SHIYSALLSGFVLSNT 700

Query: 534 ASQAR 538
           A  AR
Sbjct: 701 AIGAR 705



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 112/484 (23%), Positives = 205/484 (42%), Gaps = 65/484 (13%)

Query: 76  KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           K +   D M E G +     Y+ ++   A+ +   +   V  R++  G  L    ++++V
Sbjct: 142 KLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVV 201

Query: 136 AAYVGFGDLEIAETIVQAMREGRRDVCKIIR---ELDLEDYSSENEGDDDDDD-----EV 187
            A    G ++ AE             CK++R    LD    +S    +   DD      V
Sbjct: 202 NALCKNGFVQAAEMFC----------CKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRV 251

Query: 188 FEKLL------PNSINPSS-----------------EPPLLPKTFAPNSRIYTTLMKGYM 224
           FEK+       PNS+  S                  +  ++ K   P++R YT L+K   
Sbjct: 252 FEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 311

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           + G     ++ML  M  +   A  P+  TYT ++  L + G ++ A  V  +M + G+  
Sbjct: 312 DIGMTDKAMKMLDEMATK---ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 368

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
             IT+N L+ GYC++  +  A +LL  M +    +P++ +YN L++G   +  S  A   
Sbjct: 369 GIITFNALINGYCKEGWVVSAFQLLSVM-EKGNCKPNIRTYNELMEGLCRVSKSYKAFLL 427

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
              +   G+ P +++Y  L+  F    Q  +A  +F+ M     ++ D   +  L++G C
Sbjct: 428 LRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSM-NSAGLEPDGFTFTALIDGLC 486

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKE 463
           ++G +E+A  I+  M + G   +  T+ +L +G     K  +   L++ + E RC     
Sbjct: 487 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 546

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
             N               LDAL     +     +A  ++  M ++G+ P+   +  I +E
Sbjct: 547 TFNC-------------FLDALG----KDYKLNEANAMLGKMMKYGLVPSVVTH-TILIE 588

Query: 524 MHSR 527
            H R
Sbjct: 589 GHCR 592



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/484 (21%), Positives = 205/484 (42%), Gaps = 88/484 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M     +P+V  ++ ++ RL     +G +E      V  K ++    P I++        
Sbjct: 326 MATKACVPNVHTYTILIDRLC---REGKIEEAN--GVFRKMLKHGLCPGIIT-------- 372

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA++N     G      QL   M +   KP++ TYN +++   R S+ +    +L R++
Sbjct: 373 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 432

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIR-- 166
           + G+     T+  LV  +   G L +A  I  +M     +            +CK+ R  
Sbjct: 433 DNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLE 492

Query: 167 --------------ELDLEDYSSENEGD-----DDDDDEVFEKLLPNSINPSSEP----- 202
                          LD   +++  +G        D   +FE ++ N    ++       
Sbjct: 493 QANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFL 552

Query: 203 -----------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                             ++     P+   +T L++G+   G  + +++ML    R +  
Sbjct: 553 DALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML---ERMKQA 609

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P+  TYT +++ L   G ++ A  +L  M+  GV  N  TY +L+K + +  ++D+A
Sbjct: 610 GCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRA 669

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +++  M  +   +P+   Y+ L+ GF+L + + GA       RA       +S T  + 
Sbjct: 670 FQIVSTMVKNG-CQPNSHIYSALLSGFVLSNTAIGA-------RA-------LSSTGDLD 714

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           A +LSS+    N + +E+ +      D+  +N LV G C+ G + EA ++ + M ++G +
Sbjct: 715 ARSLSSEENDNNCLSNEIKKCGVPTEDL--YNFLVVGLCKEGRIIEADQLTQDMVKHGLF 772

Query: 426 PNVA 429
           P+ A
Sbjct: 773 PDKA 776



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 131/323 (40%), Gaps = 52/323 (16%)

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVV------------------------------- 258
           +  V+++GA+    +      +  Y+T++                               
Sbjct: 138 NGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 197

Query: 259 ----SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
               +AL K G +  A     ++ R+G   +      L+   C++  + +A  +  +M+ 
Sbjct: 198 RTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSK 257

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +    P+ V+Y+ILI G         A     EM  +G  P+  +YT L+KA        
Sbjct: 258 EENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTD 317

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A K+ DEM     V  ++  + +L++  CR G +EEA  +  +M ++G  P + T+ +L
Sbjct: 318 KAMKMLDEMATKACVP-NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 376

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            NG     K G  +  ++ +          V    +  P ++   EL++ L     R + 
Sbjct: 377 INGYC---KEGWVVSAFQLLS---------VMEKGNCKPNIRTYNELMEGLC----RVSK 420

Query: 495 FRKALEIVACMEEHGIPPNKTKY 517
             KA  ++  + ++G+ P++  Y
Sbjct: 421 SYKAFLLLRRVVDNGLLPDRVTY 443



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 58/322 (18%), Positives = 128/322 (39%), Gaps = 47/322 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G +P V   + ++     +G+     S+K+ +    R+++       +   P+   
Sbjct: 571 MMKYGLVPSVVTHTILIEGHCRAGETAL--SLKMLE----RMKQ-------AGCSPNVYT 617

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N   N G+ ++   +   M  FG  P+  TY V++K   +A R      ++  ++
Sbjct: 618 YTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 677

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G       + +L++ +V      ++ T + A             +LD    SSE E D
Sbjct: 678 KNGCQPNSHIYSALLSGFV------LSNTAIGARALSSTG------DLDARSLSSE-END 724

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           ++         L N I          K   P   +Y  L+ G   EGR+ +  ++   M 
Sbjct: 725 NN--------CLSNEI---------KKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMV 767

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +       PD    ++++    K    D   + +  +       +  +Y  ++ G   + 
Sbjct: 768 KH---GLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEG 823

Query: 301 QIDKAKELLREMADDAKIEPDV 322
           ++ +A++L+ ++     IE +V
Sbjct: 824 RVQEAQKLVSDLVRHTGIEEEV 845


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 138/621 (22%), Positives = 241/621 (38%), Gaps = 134/621 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+  GY+P   A S ++  L   G  +G  E       ++ +V K           P+  
Sbjct: 321 MIELGYVPSEAAVSGLIEGLIKMGSIEGAFE-------LLNKVGKLG-------VVPNLF 366

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN+++N+    GK ++   LF  M E G  P+ +TY ++I    R ++  +  +   ++
Sbjct: 367 VYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKM 426

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYS---- 174
           +E GI+  + ++ S++     FG +++AE + + M + G +        L +  Y     
Sbjct: 427 IECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSL-ISGYCKDGL 485

Query: 175 --------SENEGDDDDDDEV-FEKLLPN--SINPSSEPP-----LLPKTFAPNSRIYTT 218
                    E  G     + V F  L+     IN  +E       ++     PN   Y  
Sbjct: 486 VPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNV 545

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L++G+  EG  +    +L  M ++      PD  TY  +++ L   G +  A++ + ++ 
Sbjct: 546 LIEGHCREGNTTRAFELLDEMIKK---GLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLH 602

Query: 279 RIGVPANRITYNILLKGYCQQ-----------------LQIDKAK--------------- 306
                 + + Y  LL+G+C++                 LQ+D                  
Sbjct: 603 HKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRI 662

Query: 307 --ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
             ELLREM     ++PD V Y ILIDGFI   +   A  F+  M   G  P  ++YT L+
Sbjct: 663 LFELLREMHGKG-MQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALV 721

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDI------------------------------- 393
                +     A  +F  ML    +   I                               
Sbjct: 722 NGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFA 781

Query: 394 --VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
             V +N+L+ GYC++G  +EA ++++ M   G  P+  TY +                  
Sbjct: 782 NTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTF----------------- 824

Query: 452 KEIKERCEVKKEGVNADSD-----LPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
             I E C  K+  V+A  D     L   LKPD  + + L   C       +AL++   M 
Sbjct: 825 --IYEYC--KRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMM 880

Query: 507 EHGIPPNKTKYKKIYVEMHSR 527
             G+ P ++ Y  + V++  R
Sbjct: 881 LRGLKPTQSTYHSLMVQLAQR 901



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 192/465 (41%), Gaps = 77/465 (16%)

Query: 5   GYLPHVKAWSTVVSRLA-------------ASGDDGPVESVKLFDVVVKRVRKFSD---- 47
           G LP V+  S +++ LA                + G      ++ VVVK + +  D    
Sbjct: 185 GLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKA 244

Query: 48  PDIVSDSKPDTAA-----YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
            +I++ ++ +  +     YN  +N      +  + +++   + E G K D++TY  ++  
Sbjct: 245 KEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLG 304

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
             R     + + +++ ++E+G          L+   +  G +E A               
Sbjct: 305 LCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGA--------------- 349

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
                                    FE L     N   +  ++P  F  NS I +    G
Sbjct: 350 -------------------------FELL-----NKVGKLGVVPNLFVYNSMINSLCKTG 379

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
            + E  +  +V          +   +P+ VTYT ++    +   +D A     +M   G+
Sbjct: 380 KLEEAELLFSV--------MAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGI 431

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
            A   +YN ++   C+  ++  A+ L +EM D   ++P V +Y  LI G+        A 
Sbjct: 432 SATVYSYNSMINCQCKFGKMKMAELLFKEMVDKG-LKPTVATYTSLISGYCKDGLVPKAF 490

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             ++EM  +GIAP  +++T L+      ++   A+K+FDEM+ + ++  + V +N+L+EG
Sbjct: 491 KLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMV-ELKILPNEVTYNVLIEG 549

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           +CR G    A  +++ M + G  P+  TY  L  G+    +  EA
Sbjct: 550 HCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEA 594



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/394 (20%), Positives = 159/394 (40%), Gaps = 60/394 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+  IYT ++K       + D  +    + + E N      VTY   ++ L K+  +  A
Sbjct: 223 PDCYIYTVVVKCLC---ELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEA 279

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +V   +   G+ A+ +TY  L+ G C+  + +   E++ EM +   + P   + + LI+
Sbjct: 280 VEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYV-PSEAAVSGLIE 338

Query: 331 GFILIDDSAGALTFFNE-----------------------------------MRARGIAP 355
           G I +    GA    N+                                   M  RG+ P
Sbjct: 339 GLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNP 398

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YT L+  F   ++  +A   F++M+ +  +   + ++N ++   C+ G ++ A+ +
Sbjct: 399 NDVTYTILIDGFGRRAKLDVAFYYFNKMI-ECGISATVYSYNSMINCQCKFGKMKMAELL 457

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CE 459
            + M + G  P VATY SL +G        +A  L+ E+  +                C+
Sbjct: 458 FKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQ 517

Query: 460 VKKEGVNA---DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           + K    +   D  +   + P+E   + L +   R     +A E++  M + G+ P+   
Sbjct: 518 INKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYT 577

Query: 517 YKKIYVEMHSRMFTSKHASQARQDRRRERKRAAE 550
           Y+ +   + S    S+ A +   D   + +R  E
Sbjct: 578 YRPLIAGLCSTGRVSE-AKEFINDLHHKHQRLDE 610



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 92/216 (42%), Gaps = 20/216 (9%)

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            +++LI  ++        +   N MR  G+ P   + + L+ A A   + +   ++FD +
Sbjct: 157 GFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTL 216

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + +  VK D   + ++V+  C +    +AK II + + NG   ++ TY    NG+  +++
Sbjct: 217 V-NAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKR 275

Query: 444 PGEALLLWKEIKER----------------CEVKKEGVN---ADSDLPPPLKPDEELLDA 484
             EA+ + + + E+                C +++  V     D  +     P E  +  
Sbjct: 276 VWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSG 335

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L +  ++      A E++  + + G+ PN   Y  +
Sbjct: 336 LIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSM 371


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 219/493 (44%), Gaps = 57/493 (11%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D KPD  +Y  V+N     G     L++FD+M E G  PDV+ YN+MI    +       
Sbjct: 179 DLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQG 238

Query: 113 VFVLERILEMGITL-CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
             + ER+++       + T+  ++      G  + +  + + M   +++ C    E+DL 
Sbjct: 239 KEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERM---KKNEC----EMDLF 291

Query: 172 DYSSE-----NEGDDDDDDEVFEKLLPNS-----------INPSSEPPLLPKTF------ 209
            YSS      + G+ D   EV+++++  S           +N       + ++F      
Sbjct: 292 TYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMM 351

Query: 210 ----APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                 N   Y   ++G     +V + + +   +RR+    S  D  TY  ++  L K G
Sbjct: 352 GKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRR---GSGADSTTYGVLIHGLCKNG 408

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD-DAKIEPDVVS 324
            +++A ++L E    G   +   Y+ ++ G  +Q ++D+A  ++ +M     ++ P V  
Sbjct: 409 HLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVC- 467

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
            N LI+GF+       A+ FF EM  +G +PT +SY TL+     + +   A     EML
Sbjct: 468 -NPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEML 526

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
            +   K D++ +++L++G C+   ++ A  +  ++   G  P+V  +  L +G+  A K 
Sbjct: 527 -EKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKI 585

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            +ALLL+  +K+            S+  P L     L+D L     +A     A  I AC
Sbjct: 586 EDALLLYSNMKQ------------SNCLPNLVTHNTLMDGL----YKARECEMASVIWAC 629

Query: 505 MEEHGIPPNKTKY 517
           M ++G  P+   Y
Sbjct: 630 MFKNGFQPDIISY 642



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 193/420 (45%), Gaps = 34/420 (8%)

Query: 45  FSDPDIVSDSKPDTAAYNAVLNAC--ANL-GKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
           F   + +   KP   +YNA+LNA   ANL  K + FL  F+ +   G  P++ TYN++IK
Sbjct: 101 FQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETV---GILPNLQTYNILIK 157

Query: 102 LCARASR----KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
           +  +  +    K LL ++  + L+  +     ++ +++   V  GDL  A  +   M E 
Sbjct: 158 ISVKKRQFVEAKGLLDWMWSKDLKPDV----YSYGTVINGMVKSGDLVSALEVFDEMFE- 212

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
            R +   +   ++        GD     E++E+L+  S               PN   Y 
Sbjct: 213 -RGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGS------------CVYPNVVTYN 259

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            ++ G    GR  +++ M   M++ E      D  TY++++  L   G++D A +V  EM
Sbjct: 260 VMINGLCKMGRFDESLEMWERMKKNE---CEMDLFTYSSLICGLCDVGNVDGAVEVYKEM 316

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            +  V  + +TYN LL G+C+  +I ++ EL   M  +     +VVSYNI I G      
Sbjct: 317 VKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENC--HNVVSYNIFIRGLFENRK 374

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A++ +  +R RG      +Y  L+     +     A K+  E  +D   K+D  A++
Sbjct: 375 VEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEA-KDGGDKLDAFAYS 433

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +V+G  + G V+EA  I+ +M + G   +      L NG   A K  EA+  ++E++ +
Sbjct: 434 SIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETK 493



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +  T++K Y      ++ +     M  +E     P   +Y  +++A ++A  +++A   L
Sbjct: 80  VVLTVLKAYAKSKMPNEALDCFQKM--EEIFGCKPGIRSYNALLNAFIEANLLEKAESFL 137

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
           A    +G+  N  TYNIL+K   ++ Q  +AK LL  M     ++PDV SY  +I+G + 
Sbjct: 138 AYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSK-DLKPDVYSYGTVINGMVK 196

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
             D   AL  F+EM  RG+ P  + Y  ++  F          ++++ +++   V  ++V
Sbjct: 197 SGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVV 256

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +N+++ G C+MG  +E+  + ERMK+N    ++ TY SL  G+        A+ ++KE+
Sbjct: 257 TYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEM 316

Query: 455 KER 457
            +R
Sbjct: 317 VKR 319



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 183/433 (42%), Gaps = 46/433 (10%)

Query: 12  AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
            +S+++  L   G+ DG VE   ++  +VKR               D   YNA+LN    
Sbjct: 292 TYSSLICGLCDVGNVDGAVE---VYKEMVKR-----------SVVVDVVTYNALLNGFCR 337

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
            GK K+  +L+  M +     +V++YN+ I+      +    + V E +   G     TT
Sbjct: 338 AGKIKESFELWVMMGKENCH-NVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTT 396

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDV-----CKIIRELDLEDYSSENEGDDDDDD 185
           +  L+      G L  A  I++  ++G   +       I+  L  +    E  G     D
Sbjct: 397 YGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMD 456

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           +   +L P+  NP                    L+ G++   ++ + +      R  E  
Sbjct: 457 KYGCELSPHVCNP--------------------LINGFVRASKLEEAICFF---REMETK 493

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P  V+Y T+++ L KA     A   + EM       + ITY++L+ G CQ  +ID A
Sbjct: 494 GCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMA 553

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             L R++     +EPDV  +NIL+ G         AL  ++ M+     P  +++ TLM 
Sbjct: 554 LNLWRQVLVKG-LEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMD 612

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
               + + ++A+ ++  M ++   + DI+++N+ ++G C  G + +   + +   +NG  
Sbjct: 613 GLYKARECEMASVIWACMFKNG-FQPDIISYNITLKGLCSCGRISDGIALFDDALKNGIL 671

Query: 426 PNVATYGSLANGI 438
           P   T+  L   +
Sbjct: 672 PTSITWYILVRAV 684



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/498 (21%), Positives = 207/498 (41%), Gaps = 83/498 (16%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V ++ TV++ +  SGD   V ++++FD + +R              PD   YN +++ 
Sbjct: 182 PDVYSYGTVINGMVKSGD--LVSALEVFDEMFER-----------GLVPDVMCYNIMIDG 228

Query: 68  CANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
               G   +  ++++++ +     P+V+TYNVMI    +  R    + + ER+ +    +
Sbjct: 229 FFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEM 288

Query: 127 CMTTFQSLVAAYVGFGDL----EIAETIVQ-----------AMREGRRDVCKIIRELDLE 171
            + T+ SL+      G++    E+ + +V+           A+  G     KI    +L 
Sbjct: 289 DLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELW 348

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINP----SSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
               +    +     +F + L  +       S    L  +    +S  Y  L+ G    G
Sbjct: 349 VMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNG 408

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            ++  +++L   +  +D     D   Y+++V  L K G +D A  ++ +M + G   +  
Sbjct: 409 HLNKALKIL---KEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPH 465

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
             N L+ G+ +  ++++A    REM +     P VVSYN LI+G    +  + A +F  E
Sbjct: 466 VCNPLINGFVRASKLEEAICFFREM-ETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKE 524

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +   P  I+Y+ LM       +  +A  ++ ++L    ++ D+   N+L+ G C  G
Sbjct: 525 MLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKG-LEPDVTMHNILMHGLCSAG 583

Query: 408 LVEEAKRIIERMKE-----------------------------------NGFYPNVATY- 431
            +E+A  +   MK+                                   NGF P++ +Y 
Sbjct: 584 KIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYN 643

Query: 432 ---------GSLANGISL 440
                    G +++GI+L
Sbjct: 644 ITLKGLCSCGRISDGIAL 661



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           T++KA+A S  P  A   F +M      K  I ++N L+  +    L+E+A+  +   + 
Sbjct: 83  TVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFET 142

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  PN+ TY                +L+   +K+R  V+ +G+  D      LKPD   
Sbjct: 143 VGILPNLQTYN---------------ILIKISVKKRQFVEAKGL-LDWMWSKDLKPDVYS 186

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              + +  V++     ALE+   M E G+ P+   Y
Sbjct: 187 YGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCY 222


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 215/476 (45%), Gaps = 43/476 (9%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           KF +  I     PD  A  +++      GK KK  ++ + +   GA PDV+TYNV+I   
Sbjct: 127 KFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGY 186

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV--QAMREGRRDV 161
            ++      + VLER   M +   + T+ +++ +    G L+ A  ++  Q  RE   DV
Sbjct: 187 CKSGEIDKALEVLER---MSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDV 243

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
              I    L + +  + G          KLL           +  K   P+   Y  L+ 
Sbjct: 244 ---ITYTILIEATCNDSGVGQA-----MKLLDE---------MRKKGCKPDVVTYNVLIN 286

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G   EGR+ + ++ L  M         P+ +T+  ++ ++   G    A ++L++M R G
Sbjct: 287 GICKEGRLDEAIKFLNNM---PSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKG 343

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              + +T+NIL+   C++  + +A ++L +M     + P+ +SYN L+ GF        A
Sbjct: 344 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCV-PNSLSYNPLLHGFCQEKKMDRA 402

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           + +   M +RG  P  ++Y TL+ A     +   A ++ +++       V ++ +N +++
Sbjct: 403 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPV-LITYNTVID 461

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           G  ++G  E A  ++E M+  G  P++ TY +L  G+    K  EA+ ++ ++       
Sbjct: 462 GLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDM------- 514

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            EG++        +KP     +A+     +A    +A++ +A M E G  P +  Y
Sbjct: 515 -EGLS--------IKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATY 561



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 205/457 (44%), Gaps = 54/457 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P V A ++++     SG               K+  +  +    S + PD   
Sbjct: 132 MIYQGDIPDVIACTSLIRGFCRSGK-------------TKKATRIMEILENSGAVPDVIT 178

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN ++      G+  K L++ ++M      PDV+TYN +++ LC     K  +  VL+R 
Sbjct: 179 YNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAME-VLDRQ 234

Query: 120 LEMGITLCMTTFQSLVAAYV---GFGDLEIAETIVQAMR---EGRRDVCKIIRELDLEDY 173
           L+      + T+  L+ A     G G         QAM+   E R+  CK     D+  Y
Sbjct: 235 LQRECYPDVITYTILIEATCNDSGVG---------QAMKLLDEMRKKGCKP----DVVTY 281

Query: 174 SSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           +    G   +   DE   K L N   PS           PN   +  +++   + GR  D
Sbjct: 282 NVLINGICKEGRLDEAI-KFLNNM--PSY-------GCKPNVITHNIILRSMCSTGRWMD 331

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             R+L  M R+      P  VT+  +++ L +   + RA  VL +M + G   N ++YN 
Sbjct: 332 AERLLSDMLRK---GCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNP 388

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           LL G+CQ+ ++D+A E L  M       PD+V+YN L+           A+   N++ ++
Sbjct: 389 LLHGFCQEKKMDRAIEYLEIMVSRG-CYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSK 447

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G +P  I+Y T++       + + A ++ +EM R   +K DI+ ++ L+ G  R G V+E
Sbjct: 448 GCSPVLITYNTVIDGLTKVGKTEYAVELLEEM-RRKGLKPDIITYSTLLRGLGREGKVDE 506

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           A +I   M+     P+  TY ++  G+  A++   A+
Sbjct: 507 AIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAI 543



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 139/310 (44%), Gaps = 31/310 (10%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           FA N  +   +  G + EG     ++ L  M  Q D    PD +  T+++    ++G   
Sbjct: 107 FASNIHLRKLVRNGELEEG-----LKFLERMIYQGD---IPDVIACTSLIRGFCRSGKTK 158

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A +++  +   G   + ITYN+L+ GYC+  +IDKA E+L  M+    + PDVV+YN +
Sbjct: 159 KATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMS----VAPDVVTYNTI 214

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +           A+   +    R   P  I+YT L++A    S    A K+ DEM R   
Sbjct: 215 LRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM-RKKG 273

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI-SLARKPGEA 447
            K D+V +N+L+ G C+ G ++EA + +  M   G  PNV T+  +   + S  R     
Sbjct: 274 CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAE 333

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
            LL   +++ C                  P     + L +   R     +A++++  M +
Sbjct: 334 RLLSDMLRKGCS-----------------PSVVTFNILINFLCRKRLLGRAIDVLEKMPK 376

Query: 508 HGIPPNKTKY 517
           HG  PN   Y
Sbjct: 377 HGCVPNSLSY 386



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 172/401 (42%), Gaps = 35/401 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R    P V  ++T++  L  SG              +K   +  D  +  +  PD   Y 
Sbjct: 201 RMSVAPDVVTYNTILRSLCDSGK-------------LKEAMEVLDRQLQRECYPDVITYT 247

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            ++ A  N     + ++L D+M + G KPDV+TYNV+I    +  R    +  L  +   
Sbjct: 248 ILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSY 307

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDD 181
           G    + T   ++ +    G    AE ++  M R+G      ++    L ++        
Sbjct: 308 GCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSP--SVVTFNILINFLCR----- 360

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                  ++LL  +I+   + P       PNS  Y  L+ G+  E ++   +  L  M  
Sbjct: 361 -------KRLLGRAIDVLEKMP--KHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 411

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +     +PD VTY T+++AL K G +D A ++L +++  G     ITYN ++ G  +  +
Sbjct: 412 R---GCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 468

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
            + A ELL EM     ++PD+++Y+ L+ G         A+  F++M    I P+ ++Y 
Sbjct: 469 TEYAVELLEEMRRKG-LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYN 527

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            +M     + Q   A      M+ +   K     + +L+EG
Sbjct: 528 AIMLGLCKAQQTSRAIDFLAYMV-EKGCKPTEATYTILIEG 567



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 144/352 (40%), Gaps = 51/352 (14%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS--------------- 52
           P V  ++ ++   A   D G  +++KL D + K   K   PD+V+               
Sbjct: 241 PDVITYTILIE--ATCNDSGVGQAMKLLDEMRK---KGCKPDVVTYNVLINGICKEGRLD 295

Query: 53  ------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
                         KP+   +N +L +  + G+     +L   M   G  P V+T+N++I
Sbjct: 296 EAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILI 355

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
               R       + VLE++ + G      ++  L+  +     ++ A   ++ M    R 
Sbjct: 356 NFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS--RG 413

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
               I   +    +   +G  D   E+  +L       SS      K  +P    Y T++
Sbjct: 414 CYPDIVTYNTLLTALCKDGKVDAAVEILNQL-------SS------KGCSPVLITYNTVI 460

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G    G+    V +L  MRR+      PD +TY+T++  L + G +D A ++  +M  +
Sbjct: 461 DGLTKVGKTEYAVELLEEMRRK---GLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGL 517

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            +  + +TYN ++ G C+  Q  +A + L  M +    +P   +Y ILI+G 
Sbjct: 518 SIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKG-CKPTEATYTILIEGI 568



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 105/266 (39%), Gaps = 41/266 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P V  ++ +++ L            +L    +  + K      V    P++ +
Sbjct: 339 MLRKGCSPSVVTFNILINFLCRK---------RLLGRAIDVLEKMPKHGCV----PNSLS 385

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+      K  + ++  + M   G  PD++TYN ++    +  +    V +L ++ 
Sbjct: 386 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLS 445

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
             G +  + T+ +++      G  E A  +++ MR  R+ +     + D+  YS+     
Sbjct: 446 SKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMR--RKGL-----KPDIITYSTLLRGL 498

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG  D+  ++F  +   SI PS+               Y  +M G     + S  +  
Sbjct: 499 GREGKVDEAIKIFHDMEGLSIKPSAVT-------------YNAIMLGLCKAQQTSRAIDF 545

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSAL 261
           L  M    +    P   TYT ++  +
Sbjct: 546 LAYM---VEKGCKPTEATYTILIEGI 568


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 209/493 (42%), Gaps = 85/493 (17%)

Query: 27  GPVESVKLFDVVVKRVRKFSDPDIVSD---------SKPDTAAYNAVLNACANLGKPKKF 77
           G   +V  F +V+K +  F++ D               P++  Y  +++A +   +  + 
Sbjct: 213 GVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEA 272

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+L ++M   G  PDV T+N +I    + ++ H    +++R+L  G      T+  L+  
Sbjct: 273 LKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHG 332

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKI------IRELDLEDYSSENEGDDDDDDEVFEKL 191
               G L           E R+ + KI      I    +  Y     G   +      + 
Sbjct: 333 LCRIGKLN----------EARKILIKIPCPNNAILNTLINGYVMS--GQLKEAQSFLNET 380

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
           + N              F P+   Y  LM G   EG +S    ++  M R+      P+ 
Sbjct: 381 MINF------------GFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR---GCEPNV 425

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           +TY  +V+ L KAG ++ A  VL EM+  G+  N + YN L+   C++ ++  A  LL E
Sbjct: 426 ITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSE 485

Query: 312 MADDAKIEPDVVSYNILIDGF---------------ILIDDSAG---------------- 340
           M      +PD+ +YN LI G                +L+D +                  
Sbjct: 486 MCTKG-CKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRG 544

Query: 341 ----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               ALT  N+M  RG    KI+Y  L+KAF      +   +++++M+ D  +  D ++ 
Sbjct: 545 AFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDG-LGADTISC 603

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N+++ G C++G V+ A   +      GF P++ TY S+ NG+    +  EAL L+    +
Sbjct: 604 NIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLF----D 659

Query: 457 RCEVKKEGVNADS 469
           R +V  EGV  D+
Sbjct: 660 RLQV--EGVRPDA 670



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 29/385 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQ-MHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           P+ A  N ++N     G+ K+     ++ M  FG +PD+ TYN+++  LC   S    L 
Sbjct: 352 PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS----LS 407

Query: 114 FVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
           F  + + EM    C   + T+  LV      G LE A  ++  M      +  +I    +
Sbjct: 408 FARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLI 467

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                +      +   V   LL        +P L    F  NS IY     G     R+ 
Sbjct: 468 CALCRK------EKVHVALNLLSEMCTKGCKPDL----FTYNSLIY-----GLCKVDRID 512

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  R+   M     + +  ++VTY T++ AL++ G+  +A  ++ +M   G   ++ITYN
Sbjct: 513 EAFRLFHNMLL---DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYN 569

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+K +C+   I+K  EL  +M  D  +  D +S NI+I+G   +     A  F  +   
Sbjct: 570 GLIKAFCKVGNIEKGLELYEQMIMDG-LGADTISCNIMINGLCKVGKVDNAFEFLRDAIN 628

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RG  P  ++Y +++       + K A  +FD  L+   V+ D   +N  +   C+ G+V 
Sbjct: 629 RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDR-LQVEGVRPDAFTYNTFISWQCKEGMVN 687

Query: 411 EAKRIIERMKENGFYPNVATYGSLA 435
           +A     R  ENGF P+  T+  L 
Sbjct: 688 DACLFFYRGIENGFVPSNLTWNVLV 712



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 14/257 (5%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L K  +P    +  +MK       V     +L   R    +   P+ + Y T++ AL +
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLL---RDMTKHGCVPNSIVYQTLIHALSQ 265

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +  A ++L EM  +G   +  T+N ++ G C+  +I  A +L+  M       PD +
Sbjct: 266 KNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRG-FYPDNM 324

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGI---APTKISYTTLMKAFALSSQPKLANKVF 380
           +Y  L+ G   I          NE R   I    P      TL+  + +S Q K A    
Sbjct: 325 TYGFLLHGLCRIGK-------LNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFL 377

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +E + +   + DI  +N+L+ G C+ G +  A+ ++  M   G  PNV TY  L NG+  
Sbjct: 378 NETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCK 437

Query: 441 ARKPGEALLLWKEIKER 457
           A    EA L+  E+  R
Sbjct: 438 AGLLEEAGLVLHEMSAR 454



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 34/229 (14%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
            Y   ++ L   G      ++L +M   G+      + I++K Y +  Q  +A  LL +M
Sbjct: 114 VYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                 EP   SY+++++  +  +    A   F +M ++G++PT  ++  +MKA  + ++
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNE 233

Query: 373 PKLANKVFDEMLRDPRVKVDIV----------------------------------AWNM 398
              A  +  +M +   V   IV                                   +N 
Sbjct: 234 VDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFND 293

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           ++ G C++  + +A ++++RM   GFYP+  TYG L +G+    K  EA
Sbjct: 294 VIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA 342



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 18/246 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            KPD   YN+++     + +  +  +LF  M   GA  + +TYN +I    R       +
Sbjct: 491 CKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKAL 550

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            ++  +L  G TL   T+  L+ A+   G++E    + + M         I   + +   
Sbjct: 551 TLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGL 610

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               + D+      FE  L ++IN         + F P+   Y +++ G    GR+ + +
Sbjct: 611 CKVGKVDN-----AFE-FLRDAIN---------RGFVPDIVTYNSVLNGLCKVGRIKEAL 655

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +     R +     PD  TY T +S   K G ++ A          G   + +T+N+L+
Sbjct: 656 NLF---DRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLV 712

Query: 294 KGYCQQ 299
               +Q
Sbjct: 713 YTLLKQ 718


>gi|125527993|gb|EAY76107.1| hypothetical protein OsI_04033 [Oryza sativa Indica Group]
          Length = 262

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 144/282 (51%), Gaps = 22/282 (7%)

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           MT  G       Y+ +LK YC++ +  +A +L+ E++  A ++ D  SY+ LID  +   
Sbjct: 1   MTAQGASVGLGVYSSILKAYCKEQRTAEAAQLVSEISA-AGLQLDAGSYDALIDASMTAH 59

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           D   A + F EMR   +   + SY T+M     +++P+L     D ++ DPR+++    W
Sbjct: 60  DFLSAFSLFKEMREARLPDLRTSYLTIMTGLTENNRPELMASFLDTVVDDPRIEIATHDW 119

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N ++  +C++G +E+A+R   RM    + PN  TY SL NG   A K    L+LW     
Sbjct: 120 NSIIHAFCKVGRLEDARRTYRRMVFLRYEPNNQTYLSLINGYVSAEKYFSVLILW----- 174

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
             EV+++G +           + EL+DA     V+  FF  A++++   +E  I  +K +
Sbjct: 175 -TEVRRKGAD----------FNHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWR 223

Query: 517 YKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558
           +K+ ++E H ++  +K   + R  R+ E   A  AFK W GL
Sbjct: 224 HKQAFMETHKKLKVAK--LRKRNFRKME---ALIAFKNWAGL 260


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 201/500 (40%), Gaps = 69/500 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN V+NAC   G  KK L+L  +M   G  PD++T+N+++      S+    +  
Sbjct: 223 PSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAY 282

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +    I     T   ++   V  G    A  ++ +MRE R      +       +S 
Sbjct: 283 FEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSY 342

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +D   VF+ ++   + P             N   Y  L+  Y + G  +D    
Sbjct: 343 YVCGKVEDCKAVFDMMVAEGVKP-------------NIVSYNALLGAYASRGMHADA--- 386

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           LG  +  + N   PD V+YTT+++A  ++G  ++AR+   EM +     N ++YN L+  
Sbjct: 387 LGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDA 446

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVS------------------------------- 324
           Y       +A  LL EM  D  I PDVVS                               
Sbjct: 447 YGSAGMFKEAISLLHEMEKDG-IPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKL 505

Query: 325 ----YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
               YN  I  ++   D   AL  +  M A  + P  ++Y  L+       +   + K F
Sbjct: 506 NIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFF 565

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           ++M+ D R+ +    ++ L+  Y + G + EA+     MKE+G  P+V TY ++   I  
Sbjct: 566 EDMV-DLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAM---IEA 621

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
               G     W   KE      EG          ++PD  +  +L +   R +   + L+
Sbjct: 622 YNDDGSWRNAWDLFKE-----MEG--------NTVQPDAIICSSLMEALNRGSQHERVLQ 668

Query: 501 IVACMEEHGIPPNKTKYKKI 520
           ++  M+E  IP N+  Y +I
Sbjct: 669 LMELMKEKCIPLNQKAYFEI 688



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 193/477 (40%), Gaps = 77/477 (16%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           LF +M E+  KPD   YN +I   ARA +    + +++ +L   I    TT+ +++ A  
Sbjct: 177 LFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACG 236

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             G+ + A  + + M         +   + L  +  +N          FE +   +I P 
Sbjct: 237 AAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAF--KNGSQYSKAIAYFEMMKGANIAPD 294

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                   TF  N  I+  +      +G+  + + +L +MR +      PD VTYT+++ 
Sbjct: 295 --------TFTLNIVIHCLV-----KDGQYGEAIELLNSMREKRTQCP-PDVVTYTSIMH 340

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYN----------------------------- 290
           +    G ++  + V   M   GV  N ++YN                             
Sbjct: 341 SYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRP 400

Query: 291 ------ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG---- 340
                  LL  Y +  Q +KA+E  +EM  ++   P++VSYN LID +     SAG    
Sbjct: 401 DVVSYTTLLNAYGRSGQPEKAREAFKEMRKNS-CRPNIVSYNALIDAY----GSAGMFKE 455

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A++  +EM   GI P  +S +TL+ A     Q    + +  E  +   +K++IV +N  +
Sbjct: 456 AISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTIL-EAAKSRGIKLNIVCYNSGI 514

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             Y   G   +A  +   M  +   P+  TY  L +G+    K  E+L  ++++      
Sbjct: 515 GSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDM------ 568

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                    DL  PL   +E+  +L    V+     +A    + M+E G  P+   Y
Sbjct: 569 --------VDLRIPLT--KEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTY 615



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 104/489 (21%), Positives = 199/489 (40%), Gaps = 50/489 (10%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V+  +   D  +    KP+  +YNA+L A A+ G     L +F  + + G +PDV++Y  
Sbjct: 348 VEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTT 407

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           ++    R+ +        E   EM    C   + ++ +L+ AY   G  + A +++  M 
Sbjct: 408 LLNAYGRSGQPEK---AREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEME 464

Query: 156 EGR--RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
           +     DV  I   L       +        D + E      I               N 
Sbjct: 465 KDGIPPDVVSISTLLTACGRCRQ----ITKIDTILEAAKSRGIK-------------LNI 507

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y + +  Y+N G     + +   M     N   PD VTY  ++S L K G    + + 
Sbjct: 508 VCYNSGIGSYLNFGDYGKALELYAVMMASNVN---PDAVTYNILISGLCKVGKYAESLKF 564

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             +M  + +P  +  Y+ L+  Y +Q ++ +A+     M +   + PDV++Y  +I+ + 
Sbjct: 565 FEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCL-PDVLTYTAMIEAY- 622

Query: 334 LIDDSA--GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
             DD +   A   F EM    + P  I  ++LM+A    SQ +   ++  E++++  + +
Sbjct: 623 -NDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLM-ELMKEKCIPL 680

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           +  A+  ++     +   + A  IIE +  +    +V T   L   +    K    + L+
Sbjct: 681 NQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSISVGTLNHLLTFLGKCGKTECMMKLF 740

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
            ++   C     GV+  + L         L + LA        +RK +E++  ME+ G+ 
Sbjct: 741 YKMMSSCSTV--GVSTYTVL---------LRNLLA-----VGKWRKYIEVLQWMEDAGVS 784

Query: 512 PNKTKYKKI 520
           P    Y+ +
Sbjct: 785 PTLYMYQNV 793



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/432 (18%), Positives = 175/432 (40%), Gaps = 68/432 (15%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           ++G  P V +++T+++    SG   P ++ + F    K +RK S        +P+  +YN
Sbjct: 395 QNGLRPDVVSYTTLLNAYGRSGQ--PEKAREAF----KEMRKNS-------CRPNIVSYN 441

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A+++A  + G  K+ + L  +M + G  PDV++ + ++  C R  +   +  +LE     
Sbjct: 442 ALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSR 501

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           GI L +  + S + +Y+ FGD   A                                   
Sbjct: 502 GIKLNIVCYNSGIGSYLNFGDYGKAL---------------------------------- 527

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
              E++  ++ +++N             P++  Y  L+ G    G+ +++++    M   
Sbjct: 528 ---ELYAVMMASNVN-------------PDAVTYNILISGLCKVGKYAESLKFFEDM--- 568

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D         Y++++ + VK G +  A    + M   G   + +TY  +++ Y      
Sbjct: 569 VDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSW 628

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
             A +L +EM  +  ++PD +  + L++           L     M+ + I   + +Y  
Sbjct: 629 RNAWDLFKEMEGNT-VQPDAIICSSLMEALNRGSQHERVLQLMELMKEKCIPLNQKAYFE 687

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++ + ++    K A+++  E L      + +   N L+    + G  E   ++  +M  +
Sbjct: 688 IIASCSMLRDWKTASEII-EHLDSSLSSISVGTLNHLLTFLGKCGKTECMMKLFYKMMSS 746

Query: 423 GFYPNVATYGSL 434
                V+TY  L
Sbjct: 747 CSTVGVSTYTVL 758



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 144/350 (41%), Gaps = 41/350 (11%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFD 82
           V S+        R R+ +  D + ++      K +   YN+ + +  N G   K L+L+ 
Sbjct: 472 VVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYA 531

Query: 83  QMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
            M      PD +TYN++I  LC        L F  E ++++ I L    + SL+ +YV  
Sbjct: 532 VMMASNVNPDAVTYNILISGLCKVGKYAESLKF-FEDMVDLRIPLTKEVYSSLICSYVKQ 590

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD-----EVFEKLLPNSI 196
           G L  AE+   +M+E     C      D+  Y++  E  +DD       ++F+++  N++
Sbjct: 591 GKLTEAESTFSSMKESG---CLP----DVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTV 643

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                         P++ I ++LM+  +N G  S   R+L  M   ++     +   Y  
Sbjct: 644 Q-------------PDAIICSSLMEA-LNRG--SQHERVLQLMELMKEKCIPLNQKAYFE 687

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK--GYCQQLQIDKAKELLREMAD 314
           ++++         A +++  +       +  T N LL   G C + +    K   + M+ 
Sbjct: 688 IIASCSMLRDWKTASEIIEHLDSSLSSISVGTLNHLLTFLGKCGKTEC-MMKLFYKMMSS 746

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
            + +   V +Y +L+   + +      +     M   G++PT   Y  ++
Sbjct: 747 CSTV--GVSTYTVLLRNLLAVGKWRKYIEVLQWMEDAGVSPTLYMYQNVL 794


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 192/485 (39%), Gaps = 75/485 (15%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +P T  Y  ++ A  ++G   K +++ D+M      P+V TY ++I    R  +     
Sbjct: 273 CQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEAN 332

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V  ++L+ G+   + TF +L+  Y   G +  A  ++  M +G    CK          
Sbjct: 333 GVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN---CK---------- 379

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                                PN R Y  LM+G     RVS + 
Sbjct: 380 -------------------------------------PNIRTYNELMEGLC---RVSKSY 399

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +    +RR  DN   PD VTY  +V    K G ++ A  +   M   G+  +  T+  L+
Sbjct: 400 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 459

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++++A  +L  M     I  D V++  LIDG   I  +      F  M     
Sbjct: 460 DGLCKLGRLEQANGILGSMVKKG-ISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 518

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             T  ++   + A     +   AN +  +M++   V   +V   +L+EG+CR G    + 
Sbjct: 519 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVP-SVVTHTILIEGHCRAGETALSL 577

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           +++ERMK+ G  PNV TY  + NG+    +  EA  +   +         GV+       
Sbjct: 578 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF------GVS------- 624

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
              P+      L    V+A    +A +IV+ M ++G  PN      IY  + S    S  
Sbjct: 625 ---PNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN----SHIYSALLSGFVLSNT 677

Query: 534 ASQAR 538
           A  AR
Sbjct: 678 AIGAR 682



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 112/484 (23%), Positives = 205/484 (42%), Gaps = 65/484 (13%)

Query: 76  KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           K +   D M E G +     Y+ ++   A+ +   +   V  R++  G  L    ++++V
Sbjct: 119 KLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVV 178

Query: 136 AAYVGFGDLEIAETIVQAMREGRRDVCKIIR---ELDLEDYSSENEGDDDDDD-----EV 187
            A    G ++ AE             CK++R    LD    +S    +   DD      V
Sbjct: 179 NALCKNGFVQAAEMFC----------CKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRV 228

Query: 188 FEKLL------PNSINPSS-----------------EPPLLPKTFAPNSRIYTTLMKGYM 224
           FEK+       PNS+  S                  +  ++ K   P++R YT L+K   
Sbjct: 229 FEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 288

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           + G     ++ML  M  +   A  P+  TYT ++  L + G ++ A  V  +M + G+  
Sbjct: 289 DIGMTDKAMKMLDEMATK---ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 345

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
             IT+N L+ GYC++  +  A +LL  M +    +P++ +YN L++G   +  S  A   
Sbjct: 346 GIITFNALINGYCKEGWVVSAFQLLSVM-EKGNCKPNIRTYNELMEGLCRVSKSYKAFLL 404

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
              +   G+ P +++Y  L+  F    Q  +A  +F+ M     ++ D   +  L++G C
Sbjct: 405 LRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSM-NSAGLEPDGFTFTALIDGLC 463

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKE 463
           ++G +E+A  I+  M + G   +  T+ +L +G     K  +   L++ + E RC     
Sbjct: 464 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 523

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
             N               LDAL     +     +A  ++  M ++G+ P+   +  I +E
Sbjct: 524 TFNC-------------FLDALG----KDYKLNEANAMLGKMMKYGLVPSVVTH-TILIE 565

Query: 524 MHSR 527
            H R
Sbjct: 566 GHCR 569



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 102/486 (20%), Positives = 204/486 (41%), Gaps = 76/486 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M     +P+V  ++ ++ RL     +G +E      V  K ++    P I++        
Sbjct: 303 MATKACVPNVHTYTILIDRLCR---EGKIEEAN--GVFRKMLKHGLCPGIIT-------- 349

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA++N     G      QL   M +   KP++ TYN +++   R S+ +    +L R++
Sbjct: 350 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 409

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIR-- 166
           + G+     T+  LV  +   G L +A  I  +M     +            +CK+ R  
Sbjct: 410 DNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLE 469

Query: 167 --------------ELDLEDYSSENEGD-----DDDDDEVFEKLLPNSINPSSEP----- 202
                          LD   +++  +G        D   +FE ++ N    ++       
Sbjct: 470 QANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFL 529

Query: 203 -----------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                             ++     P+   +T L++G+   G  + +++ML    R +  
Sbjct: 530 DALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML---ERMKQA 586

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P+  TYT +++ L   G ++ A  +L  M+  GV  N  TY +L+K + +  ++D+A
Sbjct: 587 GCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRA 646

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAG--ALTFFNEMRARGIAPTKISYTTL 363
            +++  M  +   +P+   Y+ L+ GF+L + + G  AL+   ++ AR ++  +     L
Sbjct: 647 FQIVSTMVKNG-CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCL 705

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
                       A K+ DE+ +      D+  +N LV G C+ G + EA ++ + M ++G
Sbjct: 706 SSHVFRLMDVDHALKIRDEIKKCGVPTEDL--YNFLVVGLCKEGRIIEADQLTQDMVKHG 763

Query: 424 FYPNVA 429
            +P+ A
Sbjct: 764 LFPDKA 769



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 131/323 (40%), Gaps = 52/323 (16%)

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVV------------------------------- 258
           +  V+++GA+    +      +  Y+T++                               
Sbjct: 115 NGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 174

Query: 259 ----SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
               +AL K G +  A     ++ R+G   +      L+   C++  + +A  +  +M+ 
Sbjct: 175 RTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSK 234

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +    P+ V+Y+ILI G         A     EM  +G  P+  +YT L+KA        
Sbjct: 235 EENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTD 294

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A K+ DEM     V  ++  + +L++  CR G +EEA  +  +M ++G  P + T+ +L
Sbjct: 295 KAMKMLDEMATKACVP-NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 353

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            NG     K G  +  ++ +          V    +  P ++   EL++ L     R + 
Sbjct: 354 INGYC---KEGWVVSAFQLLS---------VMEKGNCKPNIRTYNELMEGLC----RVSK 397

Query: 495 FRKALEIVACMEEHGIPPNKTKY 517
             KA  ++  + ++G+ P++  Y
Sbjct: 398 SYKAFLLLRRVVDNGLLPDRVTY 420



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/323 (17%), Positives = 132/323 (40%), Gaps = 33/323 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G +P V   + ++     +G+     S+K+ +    R+++       +   P+   
Sbjct: 548 MMKYGLVPSVVTHTILIEGHCRAGETAL--SLKMLE----RMKQ-------AGCSPNVYT 594

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N   N G+ ++   +   M  FG  P+  TY V++K   +A R      ++  ++
Sbjct: 595 YTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 654

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G       + +L++ +V      ++ T + A             +LD    SSE   +
Sbjct: 655 KNGCQPNSHIYSALLSGFV------LSNTAIGARALSSTG------DLDARSLSSEENDN 702

Query: 181 DDDDDEVFEKL-LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           +     VF  + + +++    E   + K   P   +Y  L+ G   EGR+ +  ++   M
Sbjct: 703 NCLSSHVFRLMDVDHALKIRDE---IKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDM 759

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            +       PD    ++++    K    D   + +  +       +  +Y  ++ G   +
Sbjct: 760 VKH---GLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 815

Query: 300 LQIDKAKELLREMADDAKIEPDV 322
            ++ +A++L+ ++     IE +V
Sbjct: 816 GRVQEAQKLVSDLVRHTGIEEEV 838


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 221/487 (45%), Gaps = 56/487 (11%)

Query: 48  PDIVSDSK--------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           P ++S SK        PD    + ++N   +LG+      +  ++ + G +P+ +  N +
Sbjct: 27  PTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTL 86

Query: 100 IK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--RE 156
           +K LC +   K  L F  ++++  G  +   ++  L+      G+   A  +++ +  R 
Sbjct: 87  MKGLCLKGEVKKSLHF-HDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRS 145

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
            R DV           YS+  +G   D      KL+  + +  SE  +  +   P+   Y
Sbjct: 146 TRPDVVM---------YSTIIDGLCKD------KLVDEAYDLYSE--MNARGIFPDVITY 188

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           TTL+ G+   G++ +   +L  M  +  N   P+  TY T++  L K G +  ++ +LA 
Sbjct: 189 TTLICGFCLAGQLMEAFGLLNEMILKNIN---PNIYTYNTLIDTLCKEGKVKESKNLLAV 245

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           MT+ GV  + + Y+IL+ GYC   ++ KAK++   M     + PDV SYNI+I+G     
Sbjct: 246 MTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTG-VNPDVYSYNIIINGLCKGK 304

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A+    EM  + + P  ++Y++L+       +      +  EM    +   ++V +
Sbjct: 305 RVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQ-PANLVTY 363

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA--RKPGEALLLWKEI 454
           N L++G C+   +++A  +  +MKE G  PN  TY +L +G+      K G+AL     +
Sbjct: 364 NSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLV 423

Query: 455 KERC-EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           K  C +V    V                   ++ +C +   F +AL + + ME++G  PN
Sbjct: 424 KGYCIDVWTYTV------------------MISGLC-KEGMFDEALAMKSKMEDNGCIPN 464

Query: 514 KTKYKKI 520
              ++ I
Sbjct: 465 AVTFEII 471



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 161/396 (40%), Gaps = 65/396 (16%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           +K +R   D      ++PD   Y+ +++         +   L+ +M+  G  PDV+TY  
Sbjct: 135 IKLLRTIED----RSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTT 190

Query: 99  MI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-RE 156
           +I   C           + E IL+  I   + T+ +L+      G ++ ++ ++  M ++
Sbjct: 191 LICGFCLAGQLMEAFGLLNEMILK-NINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKK 249

Query: 157 GRR-DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
           G + DV  +I  + ++ Y     G+     ++F  ++   +NP                 
Sbjct: 250 GVKPDV--VIYSILMDGYCLV--GEVQKAKQIFLVMVQTGVNPDVYS------------- 292

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  ++ G     RV + + +L  M  +      PD VTY++++  L K G +     +  
Sbjct: 293 YNIIINGLCKGKRVDEAMNLLREMLHKN---MIPDTVTYSSLIDGLCKLGRITTILDLTK 349

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM   G PAN +TYN LL G C+   +DKA  L  +M +   I+P+  +Y  LIDG    
Sbjct: 350 EMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERG-IQPNKYTYTALIDGLCKG 408

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                    F  +  +G                                      +D+  
Sbjct: 409 GRLKKGQALFQHLLVKGYC------------------------------------IDVWT 432

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           + +++ G C+ G+ +EA  +  +M++NG  PN  T+
Sbjct: 433 YTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTF 468



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 120/269 (44%), Gaps = 18/269 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + +  ++ +LVK         +  +M   G+  + +T +IL+  +C   Q+  +  +
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L ++      +P+ +  N L+ G  L  +   +L F +++ A+G    ++SY  L+    
Sbjct: 68  LGKIL-KLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLC 126

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              + + A K+    + D   + D+V ++ +++G C+  LV+EA  +   M   G +P+V
Sbjct: 127 KIGETRCAIKLL-RTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDV 185

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY +L  G  LA +  EA  L  E+                +   + P+    + L D 
Sbjct: 186 ITYTTLICGFCLAGQLMEAFGLLNEM----------------ILKNINPNIYTYNTLIDT 229

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             +    +++  ++A M + G+ P+   Y
Sbjct: 230 LCKEGKVKESKNLLAVMTKKGVKPDVVIY 258


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 206/475 (43%), Gaps = 77/475 (16%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPK---KFLQLFDQMHEFGAKPDVLTYNVMIKLCARA 106
           I+   +P    Y++++     LGK +     + L  +M   G KP+V T+ + I++  RA
Sbjct: 215 ILEGFRPSLQTYSSLM---VGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRA 271

Query: 107 SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
            + +    +L+R+ + G    + T+  L+ A      L+ A+ + + M+ GR        
Sbjct: 272 GKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH------- 324

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                                                       P+   Y TL+  + ++
Sbjct: 325 -------------------------------------------KPDRVTYITLLDRF-SD 340

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            R  D+V+   +    E +   PD VT+T +V AL KAG+   A   L  M   G+  N 
Sbjct: 341 NRDLDSVKQFWS--EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            TYN L+ G  +  ++D A EL   M +   ++P   +Y + ID +    DS  AL  F 
Sbjct: 399 HTYNTLICGLLRVHRLDDALELFGNM-ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFE 457

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +M+ +GIAP  ++    + + A + + + A ++F   L+D  +  D V +NM+++ Y ++
Sbjct: 458 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF-YGLKDIGLVPDSVTYNMMMKCYSKV 516

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G ++EA +++  M ENG  P+V    SL N +  A +  EA   WK      E+K     
Sbjct: 517 GEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEA---WKMFMRMKEMK----- 568

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
               L P +     LL  L     +    ++A+E+   M + G PPN   +  ++
Sbjct: 569 ----LKPTVVTYNTLLAGLG----KNGKIQEAIELFEGMVQKGCPPNTITFNTLF 615



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 114/477 (23%), Positives = 202/477 (42%), Gaps = 53/477 (11%)

Query: 8    PHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
            P V  ++T+   LA  G +G + E+++LF+ +V++              P+T  +N + +
Sbjct: 571  PTVVTYNTL---LAGLGKNGKIQEAIELFEGMVQK-----------GCPPNTITFNTLFD 616

Query: 67   ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER---ILEM 122
                  +    L++  +M + G  PDV TYN +I  L      K  + F  +    +   
Sbjct: 617  CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPD 676

Query: 123  GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD----------VCKIIRELDLED 172
             +TLC     +L+   V    +E A  I+        D          +  I+ E  +++
Sbjct: 677  FVTLC-----TLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDN 731

Query: 173  YSSENE-----GDDDDDDEVFEKLLPNSI---NPSSEPPLLPK-----TFAPNSRIYTTL 219
              S +E     G   D D +   ++  S    N S    L  K        P    Y  L
Sbjct: 732  AVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLL 791

Query: 220  MKGYMNEGRVSDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
            + G +     +D + +   +  Q +     PD  TY  ++ A  K+G +D   ++  EM+
Sbjct: 792  IGGLLE----ADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMS 847

Query: 279  RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
                 AN IT+NI++ G  +   +D A +L  ++  D    P   +Y  LIDG       
Sbjct: 848  THECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRL 907

Query: 339  AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
              A   F  M   G  P    Y  L+  F  + +   A  +F  M+++  V+ D+  +++
Sbjct: 908  YEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG-VRPDLKTYSV 966

Query: 399  LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            LV+  C +G V+E     + +KE+G  P+V  Y  + NG+  + +  EAL+L+ E+K
Sbjct: 967  LVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMK 1023



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 161/359 (44%), Gaps = 21/359 (5%)

Query: 80   LFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
            LF++   + G +P + TYN++I     A    +   V  ++   G    + T+  L+ AY
Sbjct: 771  LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830

Query: 139  VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
               G ++    + + M     +   I   + +        G+ DD  +++  L+ +    
Sbjct: 831  GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKA--GNVDDALDLYYDLMSD---- 884

Query: 199  SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                    + F+P +  Y  L+ G    GR+ +  ++   M    D    P+   Y  ++
Sbjct: 885  --------RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGML---DYGCRPNCAIYNILI 933

Query: 259  SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
            +   KAG  D A  +   M + GV  +  TY++L+   C   ++D+     +E+ +   +
Sbjct: 934  NGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG-L 992

Query: 319  EPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKISYTTLMKAFALSSQPKLAN 377
             PDVV YN++I+G         AL  FNEM+ +RGI P   +Y +L+    ++   + A 
Sbjct: 993  NPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAG 1052

Query: 378  KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            K+++E+ R   ++ ++  +N L+ GY   G  E A  + + M   GF PN  TY  L N
Sbjct: 1053 KIYNEIQR-AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 193/448 (43%), Gaps = 56/448 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YN +L      GK ++ ++LF+ M + G  P+ +T+N +     +     L + 
Sbjct: 570 KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALK 629

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR---------------- 158
           +L ++++MG    + T+ +++   V  G ++ A      M++                  
Sbjct: 630 MLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVK 689

Query: 159 ----RDVCKIIRE-----------LDLEDY--SSENEGDDDDDDEVFEKLLPNSINPSSE 201
                D  KII             L  ED   S   E   D+     E+L+ N I    +
Sbjct: 690 ASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGD 749

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
             L+P            +++       VS    +     +  D    P   TY  ++  L
Sbjct: 750 SILVP------------IIRYSCKHNNVSGARTLFEKFTK--DLGVQPKLPTYNLLIGGL 795

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
           ++A  ++ A+ V  ++   G   +  TYN LL  Y +  +ID+  EL +EM+   + E +
Sbjct: 796 LEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTH-ECEAN 854

Query: 322 VVSYNILIDGFILIDDSAGAL-TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            +++NI+I G +   +   AL  +++ M  R  +PT  +Y  L+   + S +   A ++F
Sbjct: 855 TITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF 914

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           + ML D   + +   +N+L+ G+ + G  + A  + +RM + G  P++ TY  L + + +
Sbjct: 915 EGML-DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCM 973

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNAD 468
             +  E L  +KE+KE       G+N D
Sbjct: 974 VGRVDEGLHYFKELKE------SGLNPD 995



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 118/243 (48%), Gaps = 3/243 (1%)

Query: 212  NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
            N+  +  ++ G +  G V D + +   +    D +  P   TY  ++  L K+G +  A+
Sbjct: 854  NTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS--PTACTYGPLIDGLSKSGRLYEAK 911

Query: 272  QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            Q+   M   G   N   YNIL+ G+ +  + D A  L + M  +  + PD+ +Y++L+D 
Sbjct: 912  QLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG-VRPDLKTYSVLVDC 970

Query: 332  FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
              ++      L +F E++  G+ P  + Y  ++     S + + A  +F+EM     +  
Sbjct: 971  LCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITP 1030

Query: 392  DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            D+  +N L+      G+VEEA +I   ++  G  PNV T+ +L  G SL+ KP  A  ++
Sbjct: 1031 DLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVY 1090

Query: 452  KEI 454
            + +
Sbjct: 1091 QTM 1093



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 177/427 (41%), Gaps = 41/427 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G++P V  ++ +V  L  +G+ G  E+    DV+        D  I+    P+   
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFG--EAFDTLDVM-------RDQGIL----PNLHT 400

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++     + +    L+LF  M   G KP   TY V I    ++      +   E++ 
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMK 460

Query: 121 EMGI----TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             GI      C  +  SL  A    G    A+ I   +++       +   + ++ YS  
Sbjct: 461 TKGIAPNIVACNASLYSLAKA----GRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKV 516

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            E D+        KLL   +    EP ++         +  +L+       RV +  +M 
Sbjct: 517 GEIDEA------IKLLSEMMENGCEPDVI---------VVNSLINTLYKADRVDEAWKMF 561

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M+  +     P  VTY T+++ L K G +  A ++   M + G P N IT+N L    
Sbjct: 562 MRMKEMK---LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCL 618

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+  ++  A ++L +M D   + PDV +YN +I G +       A+ FF++M+ + + P 
Sbjct: 619 CKNDEVTLALKMLFKMMDMGCV-PDVFTYNTIIFGLVKNGQVKEAMCFFHQMK-KLVYPD 676

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++  TL+     +S  + A K+    L +   +   + W  L+        ++ A    
Sbjct: 677 FVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFS 736

Query: 417 ERMKENG 423
           ER+  NG
Sbjct: 737 ERLVANG 743



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 106/487 (21%), Positives = 196/487 (40%), Gaps = 48/487 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  A NA L + A  G+ ++  Q+F  + + G  PD +TYN+M+K  ++       + +
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKL 525

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  ++E G    +    SL+        ++ A  +   M+E +     +     L     
Sbjct: 526 LSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK 585

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   +  E+FE ++              K   PN+  + TL         V+  ++M
Sbjct: 586 N--GKIQEAIELFEGMVQ-------------KGCPPNTITFNTLFDCLCKNDEVTLALKM 630

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M    D    PD  TY T++  LVK G +  A     +M ++  P + +T   LL G
Sbjct: 631 LFKMM---DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYP-DFVTLCTLLPG 686

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +   I+ A +++     +   +P  + +  LI   +       A++F   + A GI  
Sbjct: 687 VVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICR 746

Query: 356 TKISYTT-LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              S    +++     +    A  +F++  +D  V+  +  +N+L+ G     ++E A+ 
Sbjct: 747 DGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQD 806

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK-ERCE-------------V 460
           +  ++K  G  P+VATY  L +    + K  E   L+KE+    CE             V
Sbjct: 807 VFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLV 866

Query: 461 KKEGVN----------ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           K   V+          +D D  P       L+D L+    ++    +A ++   M ++G 
Sbjct: 867 KAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS----KSGRLYEAKQLFEGMLDYGC 922

Query: 511 PPNKTKY 517
            PN   Y
Sbjct: 923 RPNCAIY 929



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 136/313 (43%), Gaps = 27/313 (8%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR---KHLL 112
            PD A YN +L+A    GK  +  +L+ +M     + + +T+N++I    +A        L
Sbjct: 818  PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877

Query: 113  VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLE 171
             + L    +   T C  T+  L+      G L  A+ + + M + G R  C I   L + 
Sbjct: 878  YYDLMSDRDFSPTAC--TYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNIL-IN 934

Query: 172  DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             +     G+ D    +F++++   +              P+ + Y+ L+      GRV +
Sbjct: 935  GFGK--AGEADAACALFKRMVKEGVR-------------PDLKTYSVLVDCLCMVGRVDE 979

Query: 232  TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYN 290
             +      +  +++  +PD V Y  +++ L K+  ++ A  +  EM T  G+  +  TYN
Sbjct: 980  GLHYF---KELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036

Query: 291  ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
             L+        +++A ++  E+   A +EP+V ++N LI G+ L      A   +  M  
Sbjct: 1037 SLILNLGIAGMVEEAGKIYNEI-QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVT 1095

Query: 351  RGIAPTKISYTTL 363
             G +P   +Y  L
Sbjct: 1096 GGFSPNTGTYEQL 1108



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/282 (19%), Positives = 111/282 (39%), Gaps = 55/282 (19%)

Query: 49   DIVSDS--KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA 106
            D++SD    P    Y  +++  +  G+  +  QLF+ M ++G +P+   YN++I    +A
Sbjct: 880  DLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKA 939

Query: 107  SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
                    + +R+++ G+   + T+  LV                         +C +  
Sbjct: 940  GEADAACALFKRMVKEGVRPDLKTYSVLVDC-----------------------LCMV-- 974

Query: 167  ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                        G  D+    F++L  + +N             P+   Y  ++ G    
Sbjct: 975  ------------GRVDEGLHYFKELKESGLN-------------PDVVCYNLIINGLGKS 1009

Query: 227  GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
             R+ + + +   M+        PD  TY +++  L  AG ++ A ++  E+ R G+  N 
Sbjct: 1010 HRLEEALVLFNEMKTSR--GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV 1067

Query: 287  ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
             T+N L++GY    + + A  + + M       P+  +Y  L
Sbjct: 1068 FTFNALIRGYSLSGKPEHAYAVYQTMVTGG-FSPNTGTYEQL 1108


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 11/238 (4%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVR-MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +P+      L+    N  RV + +  M G +RR       PD VTYTT++  L     + 
Sbjct: 128 SPDCCTLNILLNCLCNVNRVGEGLAVMAGILRR----GYIPDIVTYTTLIKGLCMEHRIS 183

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI-----EPDVV 323
           +A  +   M ++G   N ITY  L+KG C+   I  A +L +EM +D+ +     +P V+
Sbjct: 184 KAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVI 243

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           SY+I+ID          A   F EM+ +G+ PT ISYT+L+  F    + + A ++F+EM
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEM 303

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           + +  V+ ++V +N+L++  C+ G V EAK ++E M + G  PN+ TY SL  G  L 
Sbjct: 304 V-NQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLV 360



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 204/478 (42%), Gaps = 46/478 (9%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RAS 107
           +S   PD    N +LN   N+ +  + L +   +   G  PD++TY  +IK LC   R S
Sbjct: 124 LSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRIS 183

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRRDVC 162
           +  LL     R+ ++G T    T+ +L+      G++ IA  + Q M       G     
Sbjct: 184 KAALL---FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKP 240

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
            +I    + D   ++  +D+  D +FE++    + P+                YT+L+ G
Sbjct: 241 VVISYSIIIDALCKDRREDEARD-LFEEMKVQGMTPTVIS-------------YTSLIHG 286

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           +   G+  +  R+   M  Q      P+ VT+  ++  L K G +  A+ +L  M + G+
Sbjct: 287 FCCGGKWEEAKRLFNEMVNQ---GVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGI 343

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N +TYN L++G+C    ++ A+EL   M      EPDV+ Y +LI+G+        A+
Sbjct: 344 VPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKG-CEPDVICYTVLINGYCKTSKVEEAM 402

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             +N M   G  P   +Y  L+       +   A K+F  M +   +  D+  + + + G
Sbjct: 403 KLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVM-KVYGIPGDLYIYGIFLNG 461

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
            C+ G + EA  +  ++K      ++  +  L +G+  A K   A  L++++ +      
Sbjct: 462 LCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE----- 516

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                       L+PD    + +     R     KA  +   ME++G  P+K  Y  +
Sbjct: 517 -----------ELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATL 563



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 168/407 (41%), Gaps = 90/407 (22%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           V    P   +Y ++++     GK ++  +LF++M   G +P+V+T+NV+I +  +  +  
Sbjct: 270 VQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVI 329

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
               +LE +++ GI   + T+ SL+  +   GDL  A  +  +M                
Sbjct: 330 EAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSM---------------- 373

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                      PS       K   P+   YT L+ GY    +V 
Sbjct: 374 ---------------------------PS-------KGCEPDVICYTVLINGYCKTSKVE 399

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +++   M +       PD  TY  +++ L + G +  A+++   M   G+P +   Y 
Sbjct: 400 EAMKLYNGMLQV---GKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYG 456

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           I L G C+   + +A EL  ++     I+ D+  +N LIDG                   
Sbjct: 457 IFLNGLCKNGCLFEAMELFNKL-KSYNIKLDIECFNCLIDG------------------- 496

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
                       L KA  L +  +L  K+  E L+      D+V +N+++  +CR G V 
Sbjct: 497 ------------LCKAGKLETAWELFEKLPQEELQP-----DVVTYNIMIHEFCRGGQVV 539

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +A  + ++M++NG  P+  TY +L  G   ++K  + + L   + +R
Sbjct: 540 KANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQR 586



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P + S+  L+ G   I   +     +N+MR  GI+P   +   L+      ++      V
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
              +LR   +  DIV +  L++G C    + +A  +  RM++ G  PN  TYG+L  G+ 
Sbjct: 154 MAGILRRGYIP-DIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLC 212

Query: 440 LARKPGEALLLWKEI 454
                  AL L +E+
Sbjct: 213 RTGNISIALKLHQEM 227


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 5/246 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P        +   +N  R    +     MRR      +P+  T   V+ A  K G +D
Sbjct: 199 FLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSR---IYPNSYTLNLVICACCKLGRLD 255

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  V  EM  +G   N  +YN L+ GYC +  +  A +L R + +   + PDVV++N L
Sbjct: 256 KANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKL-RSVMEKNGVPPDVVTFNTL 314

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ++GF  +     A   F EM+   ++PT ++Y  L+  ++ +   ++ N++F+EM R  +
Sbjct: 315 VNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRF-Q 373

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           VK DI+ +N L+ G C+ G  ++A  ++  + E G  PN +T+ +L  G  + ++   A 
Sbjct: 374 VKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAF 433

Query: 449 LLWKEI 454
            ++K +
Sbjct: 434 QIYKSM 439



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 5/249 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F+PN   Y TL+ GY N+G +S  +++   M   E N   PD VT+ T+V+   K G + 
Sbjct: 269 FSPNVASYNTLIAGYCNKGLLSSAMKLRSVM---EKNGVPPDVVTFNTLVNGFCKVGKLQ 325

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A ++  EM  + +    +TYNIL+ GY +    +    L  EM+   +++ D+++YN L
Sbjct: 326 EASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSR-FQVKADILTYNAL 384

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G      +  A     E+  +G+ P   +++ L+    +  Q + A +++  M++   
Sbjct: 385 ILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSF 444

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              D   + ML+  +C     + A +++E M      P+V     L  G+    K   A+
Sbjct: 445 TPCD-QTFRMLLSTFCENEDYDGAVQLLEEMLNRHKAPDVNNLYELCAGLGQCGKVKTAM 503

Query: 449 LLWKEIKER 457
           +L  E++ +
Sbjct: 504 MLCSELEAQ 512



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 145/371 (39%), Gaps = 55/371 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   + NA L++  N  +    L  + +M      P+  T N++I  C +  R      V
Sbjct: 201 PTVESCNAYLSSLLNFSRGDIALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVV 260

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +  MG +  + ++ +L+A Y   G L  A  +   M                     
Sbjct: 261 FEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVM--------------------- 299

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E  G                               P+   + TL+ G+   G++ +  ++
Sbjct: 300 EKNG-----------------------------VPPDVVTFNTLVNGFCKVGKLQEASKL 330

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G M+     +  P  VTY  +++   KAG+ +   ++  EM+R  V A+ +TYN L+ G
Sbjct: 331 FGEMKGM---SLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILG 387

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C++ +  KA  L+RE+ D+  + P+  +++ LI G  +   S  A   +  M      P
Sbjct: 388 LCKEGKTKKAAYLVREL-DEKGLVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSFTP 446

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              ++  L+  F  +     A ++ +EML   +   D+     L  G  + G V+ A  +
Sbjct: 447 CDQTFRMLLSTFCENEDYDGAVQLLEEMLNRHKAP-DVNNLYELCAGLGQCGKVKTAMML 505

Query: 416 IERMKENGFYP 426
              ++     P
Sbjct: 506 CSELEAQRLLP 516



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 123/279 (44%), Gaps = 22/279 (7%)

Query: 182 DDDDEVFEKLLPNSINPSSEPP---LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           D   ++FE LL +     S P    LL KTFA         +K + N    SDT      
Sbjct: 148 DFPSKLFESLLYSYRLCDSSPHVFDLLFKTFAH--------LKKFRN---ASDT------ 190

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
             R +D    P   +    +S+L+     D A     EM R  +  N  T N+++   C+
Sbjct: 191 FCRMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSRIYPNSYTLNLVICACCK 250

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++DKA  +  EM       P+V SYN LI G+      + A+   + M   G+ P  +
Sbjct: 251 LGRLDKANVVFEEMGT-MGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVV 309

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++ TL+  F    + + A+K+F EM +   +    V +N+L+ GY + G  E   R+ E 
Sbjct: 310 TFNTLVNGFCKVGKLQEASKLFGEM-KGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEE 368

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           M       ++ TY +L  G+    K  +A  L +E+ E+
Sbjct: 369 MSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEK 407



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVES-VKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G+ P+V +++T++   A   + G + S +KL  V+ K           +   PD   +N 
Sbjct: 268 GFSPNVASYNTLI---AGYCNKGLLSSAMKLRSVMEK-----------NGVPPDVVTFNT 313

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++N    +GK ++  +LF +M      P  +TYN++I   ++A    +   + E +    
Sbjct: 314 LVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQ 373

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           +   + T+ +L+      G  + A  +V+ + E
Sbjct: 374 VKADILTYNALILGLCKEGKTKKAAYLVRELDE 406


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 186/434 (42%), Gaps = 104/434 (23%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L+ GY   V A+S ++S    SG     E++K+FD +             +   P+   Y
Sbjct: 217 LKEGYGKTVYAFSALISAYGRSGYCN--EAIKVFDSMKS-----------NGLMPNLVTY 263

Query: 62  NAVLNACANLG-KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           NAV++AC   G + KK +++FD M   G +PD +T+N ++ +C+R         +   ++
Sbjct: 264 NAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMV 323

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI   + T+ +L+ A    G +++A  I+                             
Sbjct: 324 DKGIDQDIFTYNTLLDAVCKGGQMDLAFEIM----------------------------- 354

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                              SE P   K   PN   Y+T++ GY   GR+ D + M   M+
Sbjct: 355 -------------------SEMP--TKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMK 393

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                    D V+Y T++S   K G  ++A  V  EM   G+  + +TYN LL GY +Q 
Sbjct: 394 FL---GVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQY 450

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           + D+ + +  EM    ++ P++++Y+ LID +     S G L                  
Sbjct: 451 RYDEVRRVFEEM-KRGRVSPNLLTYSTLIDVY-----SKGGLY----------------- 487

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
                        K A +VF E  +   +K D+V ++ L++  C+ GLVE +  +++ M 
Sbjct: 488 -------------KEAMEVFRE-FKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMT 533

Query: 421 ENGFYPNVATYGSL 434
           + G  PNV TY S+
Sbjct: 534 KEGIRPNVVTYNSI 547



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 135/276 (48%), Gaps = 18/276 (6%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N   PD +T+ ++++   + G  + AR++ + M   G+  +  TYN LL   C+  Q+D 
Sbjct: 290 NGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDL 349

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A E++ EM     I P+VV+Y+ +IDG+  +     AL  FNEM+  G+   ++SY TL+
Sbjct: 350 AFEIMSEMPTK-NILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLL 408

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             +A   + + A  V  EM  +  ++ D+V +N L+ GY +    +E +R+ E MK    
Sbjct: 409 SVYAKLGRFEQALDVCKEM-ENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRV 467

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            PN+ TY +L +  S      EA+ +++E K+                  LK D  L  A
Sbjct: 468 SPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQ----------------AGLKADVVLYSA 511

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L D   +      ++ ++  M + GI PN   Y  I
Sbjct: 512 LIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSI 547



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 16/147 (10%)

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           +LA  VFD  L++   K  + A++ L+  Y R G   EA ++ + MK NG  PN+ TY +
Sbjct: 207 ELAKAVFDTALKEGYGKT-VYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNA 265

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           +   I    K G       E K+  E+       D  L   ++PD    ++L  +C R  
Sbjct: 266 V---IDACGKGG------VEFKKVVEI------FDGMLSNGVQPDRITFNSLLAVCSRGG 310

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKI 520
            +  A  + + M + GI  +   Y  +
Sbjct: 311 LWEAARRLFSAMVDKGIDQDIFTYNTL 337



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/259 (18%), Positives = 113/259 (43%), Gaps = 32/259 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y+ +++  +  G  K+ +++F +  + G K DV+ Y+ +I    +       V +
Sbjct: 469 PNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTL 528

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ + + GI   + T+ S++ A   FG    A+ +V    E      + +  + +++   
Sbjct: 529 LDEMTKEGIRPNVVTYNSIIDA---FGRSASAQCVVDDSGETTALQVESLSSIVVQEAIE 585

Query: 176 ENEGDDDDDD--EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               D +D+   E+F KL       ++E     K                 N G+  + +
Sbjct: 586 SQAADKEDNRIIEIFGKL-------AAEKACEAK-----------------NSGK-QEIL 620

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +LG  ++  +    P+ VT++ +++A  +  S + A  +L E+         + + +L+
Sbjct: 621 CILGVFQKMHELKIKPNVVTFSAILNACSRCDSFEDASMLLEELRLFDNQVYGVAHGLLM 680

Query: 294 KGYCQQLQIDKAKELLREM 312
            GY + + + +A+ L  E+
Sbjct: 681 -GYRENVWL-QAQSLFDEV 697



 Score = 38.9 bits (89), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R    P++  +ST++   +  G         L+   ++  R+F    +    K D   
Sbjct: 462 MKRGRVSPNLLTYSTLIDVYSKGG---------LYKEAMEVFREFKQAGL----KADVVL 508

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           Y+A+++A    G  +  + L D+M + G +P+V+TYN +I    R++    +V
Sbjct: 509 YSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVV 561


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 184/437 (42%), Gaps = 53/437 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YN +L++    GK ++ L L  +M   G  P+ +TYNV+I   ++         
Sbjct: 231 KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKG 290

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++  +L+ G+ +   T+  L+  Y   G L  A ++ + M    +     +   +   Y 
Sbjct: 291 LIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMV--LKGASPTVATYNSFIYG 348

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G   D  +    +L N+        LLP   +     Y TL+ GY   G +     
Sbjct: 349 LCKLGRMSDAMQQLSDMLANN--------LLPDVVS-----YNTLIYGYCRLGNLMKAFL 395

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   +R        P  VTY T++  L + G ++ A+Q+  EM   G+  + +TY IL+ 
Sbjct: 396 LFDELR---SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 295 GYCQQLQIDKAKELLREMADDA----------------------------------KIEP 320
           G C+   +  A+E   EM  +                                      P
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPP 512

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D++ YN+++DG   + +   A     +M + G+ P  ++YT+++ A   + + +   ++F
Sbjct: 513 DLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            EML    +   +V + +L+ G+   G +E A      M+E G  PNV TY SL NG+  
Sbjct: 573 YEML-SKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCK 631

Query: 441 ARKPGEALLLWKEIKER 457
            R+  +A   + E+ E+
Sbjct: 632 VRRMDQAYNFFAEMVEK 648



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 191/413 (46%), Gaps = 29/413 (7%)

Query: 31  SVKLFDVVVKRVRKFS---------DPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLF 81
           SVK+ D+++    K S         D  I S   PD    N +L    +     K ++++
Sbjct: 163 SVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVY 222

Query: 82  DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
             M EFG KP ++TYN ++    +  +    + +L  +   G      T+  L+      
Sbjct: 223 RTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKK 282

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
           G+ E A+ ++  M +    V        +  Y   N+G           +L  +++   E
Sbjct: 283 GEFEQAKGLIGEMLKTGLKVSAYTYNPLI--YGYFNKG-----------MLAEALSLQEE 329

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
             ++ K  +P    Y + + G    GR+SD ++ L  M     N   PD V+Y T++   
Sbjct: 330 --MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLA---NNLLPDVVSYNTLIYGY 384

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
            + G++ +A  +  E+  I +    +TYN LL G C+Q +++ A++L  EM ++  I PD
Sbjct: 385 CRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG-IAPD 443

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           +V+Y IL++G   +   + A  FF+EM   G+     +Y T +           A  + +
Sbjct: 444 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQE 503

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           EML       D++ +N++V+G C++G +EEA  ++++M  +G  P+  TY S+
Sbjct: 504 EMLAKG-FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSI 555



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 166/381 (43%), Gaps = 59/381 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           PD  +YN ++     LG   K   LFD++      P ++TYN ++  LC +   +     
Sbjct: 372 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL 431

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDY 173
            +E I E GI   + T+  LV      G L +A+     M  EG         ELD   Y
Sbjct: 432 KVEMINE-GIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL--------ELDSYAY 482

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           ++   G+         KL   S   S +  +L K F P+  IY  ++ G    G + +  
Sbjct: 483 ATRIVGE--------LKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEAS 534

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L   ++   +   PD+VTYT+++ A ++ G + + R++  EM   G+  + +TY +L+
Sbjct: 535 ELL---QKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLI 591

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+  + ++++A     EM +   I P+V++YN LI+G   +     A  FF EM  +GI
Sbjct: 592 HGHAGKGRLERAFIYFSEMQEKG-ILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P K SYT                                    +L+   C MG  +EA 
Sbjct: 651 FPNKYSYT------------------------------------ILINENCNMGNWQEAL 674

Query: 414 RIIERMKENGFYPNVATYGSL 434
            + ++M + G  P+  T+ +L
Sbjct: 675 SLYKQMLDRGVQPDSCTHSAL 695



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + KA E+ R M +   I+P +V+YN L+D +         L   +EM+ RG AP  ++Y 
Sbjct: 215 MSKAVEVYRTMGEFG-IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 273

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+   +   + + A  +  EML+   +KV    +N L+ GY   G++ EA  + E M  
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTG-LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVL 332

Query: 422 NGFYPNVATYGSLANGI 438
            G  P VATY S   G+
Sbjct: 333 KGASPTVATYNSFIYGL 349



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
           +K  IV +N L++ YC+ G V++   ++  M+  G  PN  TY  L NG+S   K GE
Sbjct: 230 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLS---KKGE 284


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 174/381 (45%), Gaps = 29/381 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLLV 113
           +  ++N V+N    +GK  +   + + M  +G  P+V+TYN +I   C   R  + +   
Sbjct: 154 NVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKAD 213

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLED 172
            +L+ ++  GI     T+  L+  +    ++  A  +   M R+G R         ++  
Sbjct: 214 AILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRP--------NVVT 265

Query: 173 YSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           Y+    G   D   DE            +    ++     PN   +  L+ G+     V+
Sbjct: 266 YNILINGLCSDGKVDEAV----------ALRDQMVSSDLEPNVVTHNVLINGFCKNKTVN 315

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + + +   M +Q      P+ +TYTT++ A  K G M+ A  +   M   G+     TYN
Sbjct: 316 EAINLFNDMEKQ---GVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYN 372

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ G C++  +  A+ L+ EM    K+  DVV+YNILID      +S  A+   +EM  
Sbjct: 373 CLIAGLCRKGDVKAARSLMNEMV-SKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFE 431

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+ P+ ++Y TLM  +      + A  V   M R  + + ++V  N+L++G+C  G +E
Sbjct: 432 KGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGK-QANVVTHNVLIKGFCLKGRLE 490

Query: 411 EAKRIIERMKENGFYPNVATY 431
           +A  ++  M E G  PN  TY
Sbjct: 491 DANGLLNEMLERGLVPNRTTY 511



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 147/304 (48%), Gaps = 18/304 (5%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           +PN   Y TL+ GY   GR+    +    ++        P+ VTY  ++    K  ++  
Sbjct: 187 SPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSG 246

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +V  EM R G+  N +TYNIL+ G C   ++D+A  L  +M   + +EP+VV++N+LI
Sbjct: 247 AMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMV-SSDLEPNVVTHNVLI 305

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +GF        A+  FN+M  +G+ P  ++YTTL+ A+    + + A  +++ M+ D  +
Sbjct: 306 NGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMI-DRGI 364

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             ++  +N L+ G CR G V+ A+ ++  M       +V TY  L + +    K GE+  
Sbjct: 365 FPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLC---KKGES-- 419

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
             K +K   E+ ++G+N          P     + L D   R    R AL +   ME  G
Sbjct: 420 -RKAVKLLDEMFEKGLN----------PSHVTYNTLMDGYCREGNLRAALIVRTRMERKG 468

Query: 510 IPPN 513
              N
Sbjct: 469 KQAN 472



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 154/323 (47%), Gaps = 33/323 (10%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID---KAKEL 308
           +++  VV+ L K G ++RA  V+ +M   GV  N ITYN L+ GYC+  +I    KA  +
Sbjct: 156 ISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAI 215

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L+EM     I P+ V+YNILIDGF   ++ +GA+  F EM+ +G+ P  ++Y  L+    
Sbjct: 216 LKEMVAKG-ICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILIN--G 272

Query: 369 LSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
           L S  K+   V    LRD  V  D    +V  N+L+ G+C+   V EA  +   M++ G 
Sbjct: 273 LCSDGKVDEAV---ALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGV 329

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKER----------CEV----KKEGVNADSD 470
            PN  TY +L +      +  +A  L+  + +R          C +    +K  V A   
Sbjct: 330 DPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARS 389

Query: 471 L-----PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
           L        L  D    + L D   +    RKA++++  M E G+ P+   Y  + ++ +
Sbjct: 390 LMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTL-MDGY 448

Query: 526 SRMFTSKHASQARQDRRRERKRA 548
            R    + A   R    R+ K+A
Sbjct: 449 CREGNLRAALIVRTRMERKGKQA 471



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 174/415 (41%), Gaps = 52/415 (12%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
            + F +  ++G K  +++ N ++    + S    + FV   +++  I L + +F  +V  
Sbjct: 105 FEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNG 164

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE-GDDDDDDEVFEKLLPNSI 196
               G L  A  +++ M+        I     ++ Y      G     D + ++++   I
Sbjct: 165 LCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGI 224

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                         PN   Y  L+ G+  +  VS  +R+ G M+RQ      P+ VTY  
Sbjct: 225 -------------CPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQ---GLRPNVVTYNI 268

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM---- 312
           +++ L   G +D A  +  +M    +  N +T+N+L+ G+C+   +++A  L  +M    
Sbjct: 269 LINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQG 328

Query: 313 ---------------ADDAKIE---------------PDVVSYNILIDGFILIDDSAGAL 342
                            D ++E               P+V +YN LI G     D   A 
Sbjct: 329 VDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAAR 388

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
           +  NEM ++ ++   ++Y  L+ +     + + A K+ DEM  +  +    V +N L++G
Sbjct: 389 SLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMF-EKGLNPSHVTYNTLMDG 447

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           YCR G +  A  +  RM+  G   NV T+  L  G  L  +  +A  L  E+ ER
Sbjct: 448 YCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLER 502



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 145/313 (46%), Gaps = 24/313 (7%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           +F  NS +   L+  ++   ++   +R   A +R  D       ++   ++S LVK    
Sbjct: 80  SFCVNSILADMLVLAFVRNLKI---LRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESEN 136

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
                V  EM +  +  N I++NI++ G C+  ++++A +++ +M     + P+V++YN 
Sbjct: 137 GDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWG-VSPNVITYNT 195

Query: 328 LIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           LIDG+     I     A     EM A+GI P +++Y  L+  F        A +VF EM 
Sbjct: 196 LIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQ 255

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           R   ++ ++V +N+L+ G C  G V+EA  + ++M  +   PNV T+  L NG    +  
Sbjct: 256 RQG-LRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTV 314

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            EA+ L+ ++      +K+GV+          P+      L D   +      A  +   
Sbjct: 315 NEAINLFNDM------EKQGVD----------PNAMTYTTLIDAYCKDGRMEDAFALYNM 358

Query: 505 MEEHGIPPNKTKY 517
           M + GI P  + Y
Sbjct: 359 MIDRGIFPEVSTY 371



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 158/362 (43%), Gaps = 35/362 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V  ++T++      G  G +      D ++K +       +     P+   YN +
Sbjct: 185 GVSPNVITYNTLIDGYCKMGRIGKMYKA---DAILKEM-------VAKGICPNEVTYNIL 234

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++           +++F +M   G +P+V+TYN++I       +    V + ++++   +
Sbjct: 235 IDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDL 294

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + T   L+  +     +  A  +   M +   D   +     ++ Y    +G  +D 
Sbjct: 295 EPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCK--DGRMEDA 352

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             ++  ++   I P                 Y  L+ G   +G V     ++  M  ++ 
Sbjct: 353 FALYNMMIDRGIFPEVST-------------YNCLIAGLCRKGDVKAARSLMNEMVSKKL 399

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           +A   D VTY  ++ +L K G   +A ++L EM   G+  + +TYN L+ GYC++  + +
Sbjct: 400 SA---DVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNL-R 455

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFIL---IDDSAGALTFFNEMRARGIAPTKISYT 361
           A  ++R   +    + +VV++N+LI GF L   ++D+ G L   NEM  RG+ P + +Y 
Sbjct: 456 AALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLL---NEMLERGLVPNRTTYE 512

Query: 362 TL 363
            +
Sbjct: 513 II 514



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 41/297 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M R G  P+V  ++ +++ L +   DG V E+V L D +V            SD +P+  
Sbjct: 254 MQRQGLRPNVVTYNILINGLCS---DGKVDEAVALRDQMVS-----------SDLEPNVV 299

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            +N ++N         + + LF+ M + G  P+ +TY  +I    +  R      +   +
Sbjct: 300 THNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMM 359

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++ GI   ++T+  L+A     GD++ A +++  M   +     +   + ++    + E 
Sbjct: 360 IDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGES 419

Query: 180 DDDDD--DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG--RVSDTVRM 235
                  DE+FEK     +NPS                Y TLM GY  EG  R +  VR 
Sbjct: 420 RKAVKLLDEMFEK----GLNPSHVT-------------YNTLMDGYCREGNLRAALIVR- 461

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
                R E      + VT+  ++      G ++ A  +L EM   G+  NR TY I+
Sbjct: 462 ----TRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 192/485 (39%), Gaps = 75/485 (15%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +P T  Y  ++ A  ++G   K +++ D+M      P+V TY ++I    R  +     
Sbjct: 230 CQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEAN 289

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V  ++L+ G+   + TF +L+  Y   G +  A  ++  M +G    CK          
Sbjct: 290 GVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN---CK---------- 336

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                                PN R Y  LM+G     RVS + 
Sbjct: 337 -------------------------------------PNIRTYNELMEGLC---RVSKSY 356

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +    +RR  DN   PD VTY  +V    K G ++ A  +   M   G+  +  T+  L+
Sbjct: 357 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 416

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++++A  +L  M     I  D V++  LIDG   I  +      F  M     
Sbjct: 417 DGLCKLGRLEQANGILGSMVKKG-ISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRC 475

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             T  ++   + A     +   AN +  +M++   V   +V   +L+EG+CR G    + 
Sbjct: 476 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVP-SVVTHTILIEGHCRAGETALSL 534

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           +++ERMK+ G  PNV TY  + NG+    +  EA  +   +         GV+       
Sbjct: 535 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF------GVS------- 581

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
              P+      L    V+A    +A +IV+ M ++G  PN      IY  + S    S  
Sbjct: 582 ---PNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN----SHIYSALLSGFVLSNT 634

Query: 534 ASQAR 538
           A  AR
Sbjct: 635 AIGAR 639



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 112/484 (23%), Positives = 205/484 (42%), Gaps = 65/484 (13%)

Query: 76  KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135
           K +   D M E G +     Y+ ++   A+ +   +   V  R++  G  L    ++++V
Sbjct: 76  KLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVV 135

Query: 136 AAYVGFGDLEIAETIVQAMREGRRDVCKIIR---ELDLEDYSSENEGDDDDDD-----EV 187
            A    G ++ AE             CK++R    LD    +S    +   DD      V
Sbjct: 136 NALCKNGFVQAAEMFC----------CKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRV 185

Query: 188 FEKLL------PNSINPSS-----------------EPPLLPKTFAPNSRIYTTLMKGYM 224
           FEK+       PNS+  S                  +  ++ K   P++R YT L+K   
Sbjct: 186 FEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 245

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           + G     ++ML  M  +   A  P+  TYT ++  L + G ++ A  V  +M + G+  
Sbjct: 246 DIGMTDKAMKMLDEMATK---ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 302

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
             IT+N L+ GYC++  +  A +LL  M +    +P++ +YN L++G   +  S  A   
Sbjct: 303 GIITFNALINGYCKEGWVVSAFQLLSVM-EKGNCKPNIRTYNELMEGLCRVSKSYKAFLL 361

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
              +   G+ P +++Y  L+  F    Q  +A  +F+ M     ++ D   +  L++G C
Sbjct: 362 LRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSM-NSAGLEPDGFTFTALIDGLC 420

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKE 463
           ++G +E+A  I+  M + G   +  T+ +L +G     K  +   L++ + E RC     
Sbjct: 421 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 480

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
             N               LDAL     +     +A  ++  M ++G+ P+   +  I +E
Sbjct: 481 TFNC-------------FLDALG----KDYKLNEANAMLGKMMKYGLVPSVVTH-TILIE 522

Query: 524 MHSR 527
            H R
Sbjct: 523 GHCR 526



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 102/486 (20%), Positives = 204/486 (41%), Gaps = 76/486 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M     +P+V  ++ ++ RL     +G +E      V  K ++    P I++        
Sbjct: 260 MATKACVPNVHTYTILIDRLC---REGKIEEAN--GVFRKMLKHGLCPGIIT-------- 306

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA++N     G      QL   M +   KP++ TYN +++   R S+ +    +L R++
Sbjct: 307 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 366

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIR-- 166
           + G+     T+  LV  +   G L +A  I  +M     +            +CK+ R  
Sbjct: 367 DNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLE 426

Query: 167 --------------ELDLEDYSSENEGD-----DDDDDEVFEKLLPNSINPSSEP----- 202
                          LD   +++  +G        D   +FE ++ N    ++       
Sbjct: 427 QANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFL 486

Query: 203 -----------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                             ++     P+   +T L++G+   G  + +++ML    R +  
Sbjct: 487 DALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKML---ERMKQA 543

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P+  TYT +++ L   G ++ A  +L  M+  GV  N  TY +L+K + +  ++D+A
Sbjct: 544 GCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRA 603

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAG--ALTFFNEMRARGIAPTKISYTTL 363
            +++  M  +   +P+   Y+ L+ GF+L + + G  AL+   ++ AR ++  +     L
Sbjct: 604 FQIVSTMVKNG-CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCL 662

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
                       A K+ DE+ +      D+  +N LV G C+ G + EA ++ + M ++G
Sbjct: 663 SSHVFRLMDVDHALKIRDEIKKCGVPTEDL--YNFLVVGLCKEGRIIEADQLTQDMVKHG 720

Query: 424 FYPNVA 429
            +P+ A
Sbjct: 721 LFPDKA 726



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 131/323 (40%), Gaps = 52/323 (16%)

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVV------------------------------- 258
           +  V+++GA+    +      +  Y+T++                               
Sbjct: 72  NGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDY 131

Query: 259 ----SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
               +AL K G +  A     ++ R+G   +      L+   C++  + +A  +  +M+ 
Sbjct: 132 RTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSK 191

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +    P+ V+Y+ILI G         A     EM  +G  P+  +YT L+KA        
Sbjct: 192 EESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTD 251

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A K+ DEM     V  ++  + +L++  CR G +EEA  +  +M ++G  P + T+ +L
Sbjct: 252 KAMKMLDEMATKACVP-NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 310

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            NG     K G  +  ++ +          V    +  P ++   EL++ L     R + 
Sbjct: 311 INGYC---KEGWVVSAFQLLS---------VMEKGNCKPNIRTYNELMEGLC----RVSK 354

Query: 495 FRKALEIVACMEEHGIPPNKTKY 517
             KA  ++  + ++G+ P++  Y
Sbjct: 355 SYKAFLLLRRVVDNGLLPDRVTY 377



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/323 (17%), Positives = 132/323 (40%), Gaps = 33/323 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G +P V   + ++     +G+     S+K+ +    R+++       +   P+   
Sbjct: 505 MMKYGLVPSVVTHTILIEGHCRAGETAL--SLKMLE----RMKQ-------AGCSPNVYT 551

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N   N G+ ++   +   M  FG  P+  TY V++K   +A R      ++  ++
Sbjct: 552 YTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 611

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G       + +L++ +V      ++ T + A             +LD    SSE   +
Sbjct: 612 KNGCQPNSHIYSALLSGFV------LSNTAIGARALSSTG------DLDARSLSSEENDN 659

Query: 181 DDDDDEVFEKL-LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           +     VF  + + +++    E   + K   P   +Y  L+ G   EGR+ +  ++   M
Sbjct: 660 NCLSSHVFRLMDVDHALKIRDE---IKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDM 716

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            +       PD    ++++    K    D   + +  +       +  +Y  ++ G   +
Sbjct: 717 VKH---GLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 772

Query: 300 LQIDKAKELLREMADDAKIEPDV 322
            ++ +A++L+ ++     IE +V
Sbjct: 773 GRVQEAQKLVSDLVRHTGIEEEV 795


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 183/383 (47%), Gaps = 22/383 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N +L    +     K L+++  M E+G +P V TYN M+    +       + +
Sbjct: 200 PDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDL 259

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           + ++ E G      TF  L+      G+L+ A+ ++Q M +    V        +  Y  
Sbjct: 260 VPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCK 319

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +G   +   ++E+++   ++P+                + T+M G+  EG++SD  + 
Sbjct: 320 --KGLLVEALALWEEMVTRGVSPTVAS-------------HNTIMYGFCKEGKMSDARQQ 364

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M ++      PD ++Y T++    + G++  A  +L E+    +  N +TYN L+ G
Sbjct: 365 LSDMLKKN---LMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDG 421

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   ++ A +L  +M +   I PDVV+Y +L++G   + +   A  FF+EM   G+AP
Sbjct: 422 LCRLGDLETALKLKEDMINRG-IHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAP 480

Query: 356 TKISYTT-LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            + +YT  ++    L    K A K+ +EML       D++ +N+ V G C++G +EEA  
Sbjct: 481 DQFAYTARIVGELKLGDTAK-AFKLQEEMLTKG-FPPDVITYNVFVNGLCKLGNLEEAGE 538

Query: 415 IIERMKENGFYPNVATYGSLANG 437
           ++++M  +G  P+  TY S  + 
Sbjct: 539 LLQKMIRDGHVPDHVTYTSFMHA 561



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 200/460 (43%), Gaps = 70/460 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    YN +L++    G+ ++ L L  +M E G  P  +T+NV+I   ++         
Sbjct: 234 RPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKG 293

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +++ + + G+ +   T+  L+  Y   G L  A  + + M    R V   +   +   Y 
Sbjct: 294 LIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVT--RGVSPTVASHNTIMYG 351

Query: 175 SENEGDDDD-----DDEVFEKLLPNSINPSS------------EPPLLP-----KTFAPN 212
              EG   D      D + + L+P+ I+ ++            E  +L      +  + N
Sbjct: 352 FCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFN 411

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED---NASHPDHVTYTTVVSALVKAGSMDR 269
              Y TL+ G    G +        A++ +ED      HPD VTYT +V+   K G+M  
Sbjct: 412 IVTYNTLIDGLCRLGDLET------ALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLM 465

Query: 270 ARQVLAEMTRIGV-----------------------------------PANRITYNILLK 294
           A++   EM  +G+                                   P + ITYN+ + 
Sbjct: 466 AKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVN 525

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+   +++A ELL++M  D  + PD V+Y   +   +           F +M +RG  
Sbjct: 526 GLCKLGNLEEAGELLQKMIRDGHV-PDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQT 584

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT ++YT L+ A AL+ +   A   F EM ++  V  +++ +N+L+ G+C++  +++A +
Sbjct: 585 PTVVTYTVLIHAHALNGRLDWAMAYFLEM-QEKGVVPNVITYNVLINGFCKVRKMDQACK 643

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
               M+E G +PN  TY  L N      K  EAL L+ ++
Sbjct: 644 FFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQM 683



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 153/334 (45%), Gaps = 22/334 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    Y T++  +   G V    R L  + + ++   +P  VT+  +++ L K G + +A
Sbjct: 235 PTVTTYNTMLHSFCKGGEVQ---RALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQA 291

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           + ++ EM + G+  +  TYN L+ GYC++  + +A  L  EM     + P V S+N ++ 
Sbjct: 292 KGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRG-VSPTVASHNTIMY 350

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           GF      + A    ++M  + + P  ISY TL+  F        A  + DE LR   + 
Sbjct: 351 GFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDE-LRFRNLS 409

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +IV +N L++G CR+G +E A ++ E M   G +P+V TY  L NG   A K G  +L+
Sbjct: 410 FNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNG---ACKLGN-MLM 465

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            KE              D  L   L PD+    A     ++     KA ++   M   G 
Sbjct: 466 AKEF------------FDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGF 513

Query: 511 PPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRE 544
           PP+   Y  ++V    ++   + A +  Q   R+
Sbjct: 514 PPDVITY-NVFVNGLCKLGNLEEAGELLQKMIRD 546



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 30/384 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A++N ++      GK     Q    M +    PD+++YN +I    R         +
Sbjct: 340 PTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFIL 399

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDY 173
           L+ +    ++  + T+ +L+      GDLE A  + + M  R    DV      ++    
Sbjct: 400 LDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVN---- 455

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            +   G+     E F+++L           L P  FA  +RI        + E ++ DT 
Sbjct: 456 GACKLGNMLMAKEFFDEML--------HVGLAPDQFAYTARI--------VGELKLGDTA 499

Query: 234 RMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +   A + QE+  +    PD +TY   V+ L K G+++ A ++L +M R G   + +TY 
Sbjct: 500 K---AFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYT 556

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
             +  + +   + + +E+  +M    +  P VV+Y +LI    L      A+ +F EM+ 
Sbjct: 557 SFMHAHMENGHLREGREIFYDMLSRGQ-TPTVVTYTVLIHAHALNGRLDWAMAYFLEMQE 615

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+ P  I+Y  L+  F    +   A K F EM ++  +  +   + +L+   C MG  +
Sbjct: 616 KGVVPNVITYNVLINGFCKVRKMDQACKFFIEM-QEKGIFPNKYTYTILINENCNMGKWQ 674

Query: 411 EAKRIIERMKENGFYPNVATYGSL 434
           EA R+  +M      P+  T+G+L
Sbjct: 675 EALRLYAQMLGKRIRPDSCTHGAL 698



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V+ L   R   +    P   TY T++ +  K G + RA  ++ +M   G   + +T+N+L
Sbjct: 219 VKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVL 278

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G  ++ ++ +AK L++EMA  A +     +YN LI G+        AL  + EM  RG
Sbjct: 279 INGLSKKGELQQAKGLIQEMA-KAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRG 337

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           ++PT  S+ T+M  F    +   A +   +ML+   +  DI+++N L+ G+CR+G + EA
Sbjct: 338 VSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKK-NLMPDIISYNTLIYGFCRLGNIGEA 396

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
             +++ ++      N+ TY +L +G+ 
Sbjct: 397 FILLDELRFRNLSFNIVTYNTLIDGLC 423



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 122/329 (37%), Gaps = 67/329 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++ +V+     G+             +   ++F D  +     PD  A
Sbjct: 438 MINRGIHPDVVTYTVLVNGACKLGN-------------MLMAKEFFDEMLHVGLAPDQFA 484

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A +     LG   K  +L ++M   G  PDV+TYNV +    +         +L++++
Sbjct: 485 YTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMI 544

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G      T+ S + A++  G L          REGR                      
Sbjct: 545 RDGHVPDHVTYTSFMHAHMENGHL----------REGR---------------------- 572

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E+F  +L     P+                YT L+  +   GR+   +     M 
Sbjct: 573 -----EIFYDMLSRGQTPTVVT-------------YTVLIHAHALNGRLDWAMAYFLEM- 613

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             ++    P+ +TY  +++   K   MD+A +   EM   G+  N+ TY IL+   C   
Sbjct: 614 --QEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMG 671

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILI 329
           +  +A  L  +M    +I PD  ++  L+
Sbjct: 672 KWQEALRLYAQMLGK-RIRPDSCTHGALL 699



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M+ +  ++  +  +N ++  +C+ G V+ A  ++ +M+E G YP+  T+  L NG+S   
Sbjct: 227 MMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLS--- 283

Query: 443 KPGE 446
           K GE
Sbjct: 284 KKGE 287


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 152/321 (47%), Gaps = 23/321 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL +    N   Y TL+ G+   G +    ++L  M+   +    PD VT++++V AL  
Sbjct: 96  LLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMK---ERGHSPDVVTHSSIVQALCN 152

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G++ RA Q   E   +    + + +NIL+ G C+  Q+ +A++++ EM++   I PDVV
Sbjct: 153 TGNLSRAMQYFRE--SVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERG-IVPDVV 209

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN LIDG         A      M  R + P  ++Y TL+  +  +    LA+++ + M
Sbjct: 210 TYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERM 269

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++      D+V +N L+ G+C+   +++A  ++  MK+    PN+ TY  L +G+  A +
Sbjct: 270 IQSG-THPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGR 328

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  L  E+  R                 + PD    ++L  I  R     +A +I  
Sbjct: 329 ANEACELLSEMDGR----------------GILPDIITYNSLIGIFCRNFQIEQAFQIQN 372

Query: 504 CMEEHGIPPNKTKYKKIYVEM 524
            M E G+ P+   Y  + V +
Sbjct: 373 LMVERGVIPDGISYCTLAVAL 393



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 150/301 (49%), Gaps = 29/301 (9%)

Query: 241 RQEDNASHPD--HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           R E    H D  H+TY T++    KAG M+RA Q+LAEM   G   + +T++ +++  C 
Sbjct: 93  RDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCN 152

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
              + +A +  RE  + A   PD V +NIL+ G    +  + A     EM  RGI P  +
Sbjct: 153 TGNLSRAMQYFRESVECA---PDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVV 209

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y +L+     S + + A ++ + M++  +V+ ++V +N L+ GYC+ G    A ++IER
Sbjct: 210 TYNSLIDGLCKSYRMEEARQLLETMVK-RKVRPNLVTYNTLIYGYCKTGCTGLAHQLIER 268

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV---KKEGVNADSDLPPPL 475
           M ++G +P+V T+ SL +G     K          I + CEV    K+G+ A     P L
Sbjct: 269 MIQSGTHPDVVTFNSLISGFCQKSK----------IDKACEVLHLMKKGLCA-----PNL 313

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
                L+  L D    A    +A E+++ M+  GI P+   Y  + + +  R F  + A 
Sbjct: 314 VTYNVLISGLCD----AGRANEACELLSEMDGRGILPDIITYNSL-IGIFCRNFQIEQAF 368

Query: 536 Q 536
           Q
Sbjct: 369 Q 369



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 176/408 (43%), Gaps = 32/408 (7%)

Query: 45  FSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC 103
           F D  +      +   YN ++      G  ++  QL  +M E G  PDV+T++ +++ LC
Sbjct: 92  FRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALC 151

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
              +    + +  E +     ++    F  LV        L  A  +++ M E  R +  
Sbjct: 152 NTGNLSRAMQYFRESVECAPDSV---LFNILVHGLCKANQLSEARQMIEEMSE--RGIVP 206

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL----PKTFAPNSRIYTTL 219
                D+  Y+S  +G            L  S        LL     +   PN   Y TL
Sbjct: 207 -----DVVTYNSLIDG------------LCKSYRMEEARQLLETMVKRKVRPNLVTYNTL 249

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + GY   G      +++    R   + +HPD VT+ +++S   +   +D+A +VL  M +
Sbjct: 250 IYGYCKTGCTGLAHQLI---ERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKK 306

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
                N +TYN+L+ G C   + ++A ELL EM D   I PD+++YN LI  F       
Sbjct: 307 GLCAPNLVTYNVLISGLCDAGRANEACELLSEM-DGRGILPDIITYNSLIGIFCRNFQIE 365

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A    N M  RG+ P  ISY TL  A   S +   A  + D M  D     ++  +N L
Sbjct: 366 QAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMF-DAGAIPNLFTFNSL 424

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           +EG C    ++EA+ ++  M+  G  P  +TY  L  G+  A +  +A
Sbjct: 425 MEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDA 472



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/453 (21%), Positives = 189/453 (41%), Gaps = 78/453 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G+ P V   S++V  L  +G+             + R  ++    +  +  PD+  
Sbjct: 131 MKERGHSPDVVTHSSIVQALCNTGN-------------LSRAMQYFRESV--ECAPDSVL 175

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N +++      +  +  Q+ ++M E G  PDV+TYN +I    ++ R      +LE ++
Sbjct: 176 FNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMV 235

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +  +   + T+ +L+  Y   G   +A  +++ M                          
Sbjct: 236 KRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERM-------------------------- 269

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                          I   + P ++          + +L+ G+  + ++     +L  M+
Sbjct: 270 ---------------IQSGTHPDVVT---------FNSLISGFCQKSKIDKACEVLHLMK 305

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +       P+ VTY  ++S L  AG  + A ++L+EM   G+  + ITYN L+  +C+  
Sbjct: 306 K---GLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNF 362

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           QI++A ++   M +   I PD +SY  L    +  +    A    + M   G  P   ++
Sbjct: 363 QIEQAFQIQNLMVERGVI-PDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTF 421

Query: 361 TTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            +LM+    S +   A  +   M R   DP        + +LV G C+ G V++AK ++ 
Sbjct: 422 NSLMEGLCCSRRLDEARHLLAVMRRVGCDPAAS----TYEVLVTGLCKAGRVDDAKEVLV 477

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            M   G  P V++ G++ +  +LAR+  + L L
Sbjct: 478 MMVSEGIQPLVSSSGTIVH--TLAREGKQDLAL 508



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N  T N LL+   +  +  +A ++ R+       + + ++YN LI GF    D   A   
Sbjct: 68  NNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQL 127

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
             EM+ RG +P  ++++++++A   +     A + F E +       D V +N+LV G C
Sbjct: 128 LAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE---CAPDSVLFNILVHGLC 184

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +   + EA+++IE M E G  P+V TY SL +G+  + +  EA  L + + +R
Sbjct: 185 KANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKR 237


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 212/455 (46%), Gaps = 38/455 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G +P V +++++++ L   G    V E++ LF+V+ K            D++P+++ YN 
Sbjct: 349 GCIPSVVSFNSILTCL---GKKRKVDEALSLFEVMKK------------DAEPNSSTYNI 393

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++     G+ ++  ++ D+M      P++LT N+M+    +A +      + E   + G
Sbjct: 394 IIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG 453

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
                 T+ SL+      G ++ A  + + M +   +   ++    + ++     G  +D
Sbjct: 454 CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI--HGRKED 511

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMRRQ 242
             ++F++L+     P  +  LL      N+ +      G + +GR + + +R  G +   
Sbjct: 512 GHKIFKELIRRGCKP--DLTLL------NTYMDCVFKAGEVEKGRMIFEDIRSYGFL--- 560

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD  +Y+ ++  L KAG       +   M + G   +   YN ++ G+C+  ++
Sbjct: 561 ------PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV 614

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            KA E+L EM +   ++P V +Y  ++DG   ID    A   F E +++GI    + Y++
Sbjct: 615 HKAYEILEEMKEKC-VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSS 673

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  F    +   A  + +EM++   +  ++  WN L++   +   + EA    + MKE 
Sbjct: 674 LIDGFGKVGRIDEAYLILEEMMKKG-LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEM 732

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              PN  TY  L NG+   +K  +A + W++++++
Sbjct: 733 KCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ 767



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 123/568 (21%), Positives = 224/568 (39%), Gaps = 82/568 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   GY   V  ++T+V  LA  G     +++ L D V             S  +PD   
Sbjct: 205 MQEVGYEVGVHLFTTLVRALAREGQ--VADALALVDEVKG-----------SCLEPDIVL 251

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN  ++     G      + F ++   G KPD ++Y  MI +  +A R      +  ++ 
Sbjct: 252 YNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME 311

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                 C   + +++  Y   G  E A  +++ +RE  R     +   +        +  
Sbjct: 312 AERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRE--RGCIPSVVSFNSILTCLGKKRK 369

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM- 239
            D+   +FE              ++ K   PNS  Y  ++      GRV +  R+L  M 
Sbjct: 370 VDEALSLFE--------------VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEME 415

Query: 240 ---------------------RRQED----------NASHPDHVTYTTVVSALVKAGSMD 268
                                R+ E+             +PD VTY +++  L K G +D
Sbjct: 416 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 475

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A ++  +M   G  AN + Y  L++ +    + +   ++ +E+      +PD+   N  
Sbjct: 476 EAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG-CKPDLTLLNTY 534

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +D      +       F ++R+ G  P   SY+ L+     + Q +  + +F  M +   
Sbjct: 535 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM-KQQG 593

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
             +D  A+N +V+G+C+ G V +A  I+E MKE    P VATYG++ +G++   +  EA 
Sbjct: 594 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAY 653

Query: 449 LLWKEIKER-------------------CEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           +L++E K +                     + +  +  +  +   L P+    ++L D  
Sbjct: 654 MLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 713

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKY 517
           V+A    +AL     M+E   PPN   Y
Sbjct: 714 VKAEEINEALVCFQSMKEMKCPPNTYTY 741



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 139/363 (38%), Gaps = 67/363 (18%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+LP V+++S ++  L  +G     E+  +F  + ++               D  AYNAV
Sbjct: 558 GFLPDVRSYSILIHGLTKAGQ--ARETSNIFHAMKQQGFAL-----------DARAYNAV 604

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K  ++ ++M E   +P V TY  ++   A+  R      + E     GI
Sbjct: 605 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 664

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            L +  + SL+    GFG +            GR D   +I E                 
Sbjct: 665 ELNVVLYSSLID---GFGKV------------GRIDEAYLILE----------------- 692

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              ++ K   PN   + +L+   +    +++ +    +M+  + 
Sbjct: 693 ------------------EMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK- 733

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+  TY+ +++ L +    ++A     +M + G+  N +TY  ++ G  +   I  
Sbjct: 734 --CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITD 791

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  L      +  I PD  S+N LI+G    + +  A   F E R RG      S  +L+
Sbjct: 792 AYSLFERFKANGGI-PDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLL 850

Query: 365 KAF 367
            A 
Sbjct: 851 DAL 853



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 16/164 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+V  W++++  L  +      E +    V  + +++   P       P+T  
Sbjct: 694 MMKKGLTPNVYTWNSLLDALVKA------EEINEALVCFQSMKEMKCP-------PNTYT 740

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++N    + K  K    +  M + G  P+V+TY  MI   A+         + ER  
Sbjct: 741 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 800

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
             G      +F +L+    G  +   A    Q   E R   C+I
Sbjct: 801 ANGGIPDAASFNALIE---GMSNANRAMEAYQVFEETRLRGCRI 841


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 202/474 (42%), Gaps = 53/474 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T + N +L+  A LGK     + F  M   G+KP V TYN+MI    +         +
Sbjct: 96  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGL 155

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +   G+     T+ S++  Y   G L+      + M+        +  E D+  Y+S
Sbjct: 156 FEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMK-------SMSCEPDVITYNS 208

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSRIYTTLMKGYMNEG 227
                           L N    S + P        +      PN   Y+TL+  +  E 
Sbjct: 209 ----------------LINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKED 252

Query: 228 RVSDTVRMLGAMRRQEDNASH-PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            +   ++    MRR      H P+  TYT++V A  K G++  A ++  EM  +GV  N 
Sbjct: 253 MMQQAIKFYVDMRR----VGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNV 308

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +TY  L+ G C   ++ +A++L  +M   A + P++ SYN LI GF+   +   AL   N
Sbjct: 309 VTYTALIDGLCDAERMKEAEKLFGKMV-TAGVIPNLASYNALIHGFVKAKNMDRALELLN 367

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           E++ RGI P  + Y T +       + + A  V +EM ++  +K + + +  L++ Y + 
Sbjct: 368 ELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEM-QENGIKANTLIYTTLMDAYFKS 426

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G   E   ++E M+E      V T+  L +G+   +   +A+  +  +            
Sbjct: 427 GNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMS----------- 475

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +D    L+P+  +  A+ D   +    + A  +   M + G+ P++T Y  +
Sbjct: 476 --NDF--GLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSL 525



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/450 (23%), Positives = 181/450 (40%), Gaps = 54/450 (12%)

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
           V++F    I + SKP    YN +++     G  +    LF++M   G  PD +TYN MI 
Sbjct: 117 VKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMID 176

Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
              +  R    V+  E +  M     + T+ SL+  +   G L       + M++     
Sbjct: 177 GYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKP 236

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
             +     ++ +  E         ++ ++ +   ++      +      PN   YT+L+ 
Sbjct: 237 NVVSYSTLVDAFCKE---------DMMQQAIKFYVD------MRRVGHVPNEFTYTSLVD 281

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
                G +SD  R+   M    +     + VTYT ++  L  A  M  A ++  +M   G
Sbjct: 282 ANCKIGNLSDAFRLANEML---EVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAG 338

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           V  N  +YN L+ G+ +   +D+A ELL E+     I+PD++ Y   I G   ++    A
Sbjct: 339 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRG-IQPDLLLYGTFIWGLCGLEKIEAA 397

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQP---------------------------- 373
               NEM+  GI    + YTTLM A+  S  P                            
Sbjct: 398 KVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDG 457

Query: 374 ----KLANKV---FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
               KL +K    F  M  D  ++ +   +  +++G C+   V+ A  + E+M + G  P
Sbjct: 458 LCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVP 517

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKE 456
           +   Y SL +G        EAL L  ++ E
Sbjct: 518 DRTAYTSLMDGNLKQGNMLEALALRDKMAE 547



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 182/407 (44%), Gaps = 33/407 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
           +PD   YN+++N     GK  K L+ + +M + G KP+V++Y+ ++   C     +  + 
Sbjct: 200 EPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIK 259

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F ++ +  +G      T+ SLV A    G+L  A  +   M E       +  E ++  Y
Sbjct: 260 FYVD-MRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLE-------VGVEWNVVTY 311

Query: 174 SSENEGDDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++  +G  D     + +++F K++   +              PN   Y  L+ G++    
Sbjct: 312 TALIDGLCDAERMKEAEKLFGKMVTAGV-------------IPNLASYNALIHGFVKAKN 358

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +   + +L  ++ +      PD + Y T +  L     ++ A+ V+ EM   G+ AN + 
Sbjct: 359 MDRALELLNELKGR---GIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLI 415

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y  L+  Y +     +   LL EM  +   E  VV++ +LIDG       + A+ +F  M
Sbjct: 416 YTTLMDAYFKSGNPTEGLHLLEEM-QELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRM 474

Query: 349 RAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
               G+ P    YT ++      +Q K A  +F++M ++  V  D  A+  L++G  + G
Sbjct: 475 SNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVP-DRTAYTSLMDGNLKQG 533

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + EA  + ++M E G   ++  Y SL  G S   +  +A    +E+
Sbjct: 534 NMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEM 580



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 189/413 (45%), Gaps = 34/413 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M +SG  P+V ++ST+V   A   +D   +++K + V ++RV             P+   
Sbjct: 229 MKQSGLKPNVVSYSTLVD--AFCKEDMMQQAIKFY-VDMRRVGHV----------PNEFT 275

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++A   +G      +L ++M E G + +V+TY  +I     A R      +  +++
Sbjct: 276 YTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMV 335

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + ++ +L+  +V   +++ A  ++  ++ GR        + DL  Y +   G 
Sbjct: 336 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELK-GRG------IQPDLLLYGTFIWGL 388

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
              +     K++ N +  +            N+ IYTTLM  Y   G  ++ + +L  M+
Sbjct: 389 CGLEKIEAAKVVMNEMQENG--------IKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQ 440

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYNILLKGYCQQ 299
             +   +    VT+  ++  L K   + +A      M+   G+  N   Y  ++ G C++
Sbjct: 441 ELDHEVTV---VTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKE 497

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+  A  L  +MA +  + PD  +Y  L+DG +   +   AL   ++M   G+    ++
Sbjct: 498 NQVKAATTLFEQMAQEGLV-PDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLA 556

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           YT+L+  F+  +Q + A    +EM+ +  +  +++   +L + Y  +G ++EA
Sbjct: 557 YTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKHY-ELGCIDEA 608



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 160/373 (42%), Gaps = 29/373 (7%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  KP+  +Y+ +++A       ++ ++ +  M   G  P+  TY  ++    +      
Sbjct: 232 SGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSD 291

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL--- 168
              +   +LE+G+   + T+ +L+    G  D E        M+E  +   K++      
Sbjct: 292 AFRLANEMLEVGVEWNVVTYTALID---GLCDAE-------RMKEAEKLFGKMVTAGVIP 341

Query: 169 DLEDYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
           +L  Y++   G     + D   E L            L  +   P+  +Y T + G    
Sbjct: 342 NLASYNALIHGFVKAKNMDRALELL----------NELKGRGIQPDLLLYGTFIWGLCGL 391

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            ++     ++  M   ++N    + + YTT++ A  K+G+      +L EM  +      
Sbjct: 392 EKIEAAKVVMNEM---QENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTV 448

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +T+ +L+ G C+   + KA +    M++D  ++P+   Y  +IDG    +    A T F 
Sbjct: 449 VTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFE 508

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +M   G+ P + +YT+LM    L     L      + + +  +K+D++A+  LV G+ + 
Sbjct: 509 QMAQEGLVPDRTAYTSLMDG-NLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQC 567

Query: 407 GLVEEAKRIIERM 419
             +++A+  +E M
Sbjct: 568 NQLQKARSFLEEM 580



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 137/312 (43%), Gaps = 25/312 (8%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           +K   K     + +   P+ A+YNA+++         + L+L +++   G +PD+L Y  
Sbjct: 324 MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGT 383

Query: 99  MI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            I  LC     +   V V+  + E GI      + +L+ AY   G+      +++ M+E 
Sbjct: 384 FIWGLCGLEKIEAAKV-VMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQEL 442

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--PNSRI 215
             +V  ++    L D   +N            KL+  +I+       +   F   PN+ +
Sbjct: 443 DHEV-TVVTFCVLIDGLCKN------------KLVSKAIDYFGR---MSNDFGLQPNAAV 486

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           YT ++ G   E +V     +   M ++      PD   YT+++   +K G+M  A  +  
Sbjct: 487 YTAMIDGLCKENQVKAATTLFEQMAQE---GLVPDRTAYTSLMDGNLKQGNMLEALALRD 543

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL- 334
           +M  IG+  + + Y  L+ G+ Q  Q+ KA+  L EM  +  +  +V+   +L   + L 
Sbjct: 544 KMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKHYELG 603

Query: 335 -IDDSAGALTFF 345
            ID++ G  ++ 
Sbjct: 604 CIDEAVGLQSYL 615



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 17/204 (8%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           ++ P   S N L+  F  +  + G   FF +M   G  PT  +Y  ++         + A
Sbjct: 93  RVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAA 152

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +F+EM     +  D V +N +++GY ++G +++     E MK     P+V TY SL N
Sbjct: 153 RGLFEEMKFRGLIP-DTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLIN 211

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
               + K  + L  ++E+K+                  LKP+      L D   +    +
Sbjct: 212 CFCKSGKLPKGLEFYREMKQ----------------SGLKPNVVSYSTLVDAFCKEDMMQ 255

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
           +A++    M   G  PN+  Y  +
Sbjct: 256 QAIKFYVDMRRVGHVPNEFTYTSL 279


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 193/400 (48%), Gaps = 22/400 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  +   ++N     G+P++   +F+ + E G KP ++TY  ++    R    H L+ ++
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSS 175
            ++ + G+      F +++ A    G+L+ A  I + M+E G +        L ++ Y  
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTL-IKGYGK 436

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  ++   + + +L + +              PN R    L++ + N+ ++ +   +
Sbjct: 437 --IGKLEESSRLLDMMLRDEM------------LQPNDRTCNILVQAWCNQRKIEEAWNI 482

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR-QVLAEMTRIGVPANRITYNILLK 294
           +  M   +     PD VT+ T+  A  + GS   A   ++  M    V  N  T   ++ 
Sbjct: 483 VYKM---QSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVN 539

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++ ++++A      M  +  + P++  +N LI GF+ I+D  G     + M   G+ 
Sbjct: 540 GYCEEGKMEEALRFFYRM-KELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVK 598

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++++TLM A++     K   +++ +ML +  +  DI A+++L +GY R G  E+AK+
Sbjct: 599 PDVVTFSTLMNAWSSVGDMKRCEEIYTDML-EGGIDPDIHAFSILAKGYARAGEPEKAKQ 657

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           I+ +M++ G  PNV  Y  + +G   A +  +A+ ++K++
Sbjct: 658 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 697



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 24/337 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ +   P+   YTTL+     +        +L  + + E N   PD + +  +++A  +
Sbjct: 345 LIEEGHKPSLITYTTLVTALTRQKHFHS---LLSLISKVEKNGLKPDTILFNAIINASSE 401

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           +G++D+A ++  +M   G      T+N L+KGY +  +++++  LL  M  D  ++P+  
Sbjct: 402 SGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDR 461

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDE 382
           + NIL+  +        A     +M++ G+ P  +++ TL KA+A + S     + +   
Sbjct: 462 TCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPR 521

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG---IS 439
           ML + +VK ++     +V GYC  G +EEA R   RMKE G +PN+  + SL  G   I+
Sbjct: 522 MLHN-KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580

Query: 440 LARKPGEALLLWKEIKERCEVKKEG--VNADSD--------------LPPPLKPDEELLD 483
                GE + L +E   + +V      +NA S               L   + PD     
Sbjct: 581 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFS 640

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            LA    RA    KA +I+  M + G+ PN   Y +I
Sbjct: 641 ILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQI 677



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/518 (20%), Positives = 221/518 (42%), Gaps = 49/518 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+V+ L            K F  ++  + K     +    KPDT  
Sbjct: 345 LIEEGHKPSLITYTTLVTALTRQ---------KHFHSLLSLISKVEKNGL----KPDTIL 391

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR-----ASRKHLLVFV 115
           +NA++NA +  G   + +++F++M E G KP   T+N +IK   +      S + L + +
Sbjct: 392 FNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 451

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYS 174
            + +L+     C      LV A+     +E A  IV  M+  G +    ++    L    
Sbjct: 452 RDEMLQPNDRTC----NILVQAWCNQRKIEEAWNIVYKMQSYGVKP--DVVTFNTLAKAY 505

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +        +D +  ++L N +              PN R   T++ GY  EG++ + +R
Sbjct: 506 ARIGSTCTAEDMIIPRMLHNKVK-------------PNVRTCGTIVNGYCEEGKMEEALR 552

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                 R ++   HP+   + +++   +    MD   +V+  M   GV  + +T++ L+ 
Sbjct: 553 FF---YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +     + + +E+  +M +   I+PD+ +++IL  G+    +   A    N+MR  G+ 
Sbjct: 610 AWSSVGDMKRCEEIYTDMLEGG-IDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVR 668

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  + YT ++  +  + + K A +V+ +M     +  ++  +  L+ G+       +A+ 
Sbjct: 669 PNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEE 728

Query: 415 IIERMKENGFYPNVATYGSLANGISL--ARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           +++ M+     P   T   +A+G          +A  L        ++      A S  P
Sbjct: 729 LLKDMEGKNVVPTRKTMQLIADGWKSIGVSNSNDANTLGSSFSTSSKLNIPNNIASSRSP 788

Query: 473 PPLKPDEELLDALADICVRAAF-FRKALEIVACMEEHG 509
             LK   E       +C+++ F  R+ L +V C ++ G
Sbjct: 789 LFLKGMPE----KPKLCIKSQFGLRQTLLVVLCRDQIG 822


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 183/393 (46%), Gaps = 20/393 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   A NAVL+      +P    +LFD+M   G  P V+TYN +I  C           V
Sbjct: 149 PALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEV 208

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            ++++   I   + T+ +++ A    G +  AE +  AM+E      +    + +  +  
Sbjct: 209 WDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQ 268

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            +  D +    ++++LL + +N             PN+ I+TTL+ G+    R S+   M
Sbjct: 269 RD--DVNSAVVLYQELLKSGLN-------------PNAVIFTTLIDGFCKAKRFSEAKGM 313

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M R     + P    Y +++    ++G+   A  +  EMTR+G+  +  T +I+++G
Sbjct: 314 FLEMPRFGVAPTVP---VYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRG 370

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   Q+  A   L+ + +D  +  +  +YN LID +  I +   AL     M   GI P
Sbjct: 371 LCDGGQMHVADRFLQGVQEDG-VNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEP 429

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SY++L+   +   + ++A  ++ EM+    ++ ++V +  L+ G+ + G ++ A R+
Sbjct: 430 NVVSYSSLIDGHSKRGKMQIAMAIYTEMVAK-GIEPNVVTYTALIHGHAKNGGIDAAFRL 488

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            + M ENG  PN  T   L +G+    +  EA+
Sbjct: 489 HKEMIENGISPNAITVSVLVDGLCRENRVQEAV 521



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 130/285 (45%), Gaps = 38/285 (13%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L +   P+   Y TL+     +G V+    +   M  Q+ +   P+ VTYTT++ AL +
Sbjct: 177 MLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQID---PNVVTYTTMICALCE 233

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +  A ++   M   G+  N+ TYN+L+ G+CQ+  ++ A  L +E+     + P+ V
Sbjct: 234 EGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSG-LNPNAV 292

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            +  LIDGF      + A   F EM   G+APT   Y +LM     S   + A  ++ EM
Sbjct: 293 IFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEM 352

Query: 384 LR----------------------------------DPRVKVDIVAWNMLVEGYCRMGLV 409
            R                                  +  V ++  A+N L++ YCR+G +
Sbjct: 353 TRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNL 412

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           EEA     RM E G  PNV +Y SL +G S   K   A+ ++ E+
Sbjct: 413 EEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEM 457



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 188/474 (39%), Gaps = 87/474 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G +P V  ++T+++                F   V + ++  D  +     P+   
Sbjct: 177 MLRRGLVPSVVTYNTLINACR-------------FQGTVAKAQEVWDQMVAQQIDPNVVT 223

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++ A    G      +LFD M E G +P+  TYNV++    +    +  V + + +L
Sbjct: 224 YTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELL 283

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+      F +L+  +                       CK  R        SE +G 
Sbjct: 284 KSGLNPNAVIFTTLIDGF-----------------------CKAKR-------FSEAKG- 312

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPK-TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                 +F +              +P+   AP   +Y +LM G    G   + + +   M
Sbjct: 313 ------MFLE--------------MPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEM 352

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R       PD  T + VV  L   G M  A + L  +   GV  N   YN L+  YC+ 
Sbjct: 353 TRL---GLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRI 409

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +++A      M  +  IEP+VVSY+ LIDG         A+  + EM A+GI P  ++
Sbjct: 410 GNLEEALATCTRMT-EVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVT 468

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER- 418
           YT L+   A +     A ++  EM+ +  +  + +  ++LV+G CR   V+EA R +   
Sbjct: 469 YTALIHGHAKNGGIDAAFRLHKEMIEN-GISPNAITVSVLVDGLCRENRVQEAVRFVMEY 527

Query: 419 ----------------MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
                           ++E    PN   Y +L  G+ L  +  EA  L+  +++
Sbjct: 528 SGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRK 581



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 73/372 (19%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN++++     G  ++ L L+ +M   G  PD  T +++++      + H+    
Sbjct: 324 PTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRF 383

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ + E G+ L    + +L+  Y   G+LE A              C  + E+ +E    
Sbjct: 384 LQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALA-----------TCTRMTEVGIE---- 428

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              PN   Y++L+ G+   G++   + +
Sbjct: 429 -----------------------------------PNVVSYSSLIDGHSKRGKMQIAMAI 453

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +      P+ VTYT ++    K G +D A ++  EM   G+  N IT ++L+ G
Sbjct: 454 YTEMVAK---GIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDG 510

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C++ ++ +A   + E +     +   V  N  I+   LI                   P
Sbjct: 511 LCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLI-------------------P 551

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             + Y TL+    L  Q   A K+F  M +   +  D   + +L+ G C +G V  A  +
Sbjct: 552 NSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIP-DSFTYTLLIRGQCMLGYVLNAMML 610

Query: 416 IERMKENGFYPN 427
              M + G  P 
Sbjct: 611 YADMMKIGVKPT 622



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 21/231 (9%)

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
            +L+    Q   +D+A  + R +    +  P + + N ++DG +       A   F+EM 
Sbjct: 123 GVLVIALSQMGLLDEALYVFRRL----RTLPALPACNAVLDGLVKARRPGCAWELFDEML 178

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RG+ P+ ++Y TL+ A         A +V+D+M+   ++  ++V +  ++   C  G +
Sbjct: 179 RRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQ-QIDPNVVTYTTMICALCEEGCI 237

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            +A+R+ + MKE G  PN  TY  L +G         A++L++E+       K G+N   
Sbjct: 238 GDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQEL------LKSGLN--- 288

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  P+  +   L D   +A  F +A  +   M   G+ P    Y  +
Sbjct: 289 -------PNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSL 332



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 38/233 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+  +Y+++++  +  GK +  + ++ +M   G +P+V+TY  +I   A+         
Sbjct: 428 EPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFR 487

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + ++E GI+    T   LV                         +C+  R  +   + 
Sbjct: 488 LHKEMIENGISPNAITVSVLVDG-----------------------LCRENRVQEAVRFV 524

Query: 175 SENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            E  G    D   VF               +  +   PNS IY TL+ G   +G+  +  
Sbjct: 525 MEYSGLKCSDIHSVFSNF-----------TIEEECLIPNSVIYMTLIYGLYLDGQHCEAG 573

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           ++   MR+   +   PD  TYT ++      G +  A  + A+M +IGV   R
Sbjct: 574 KLFSYMRK---SGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKPTR 623


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 170/387 (43%), Gaps = 10/387 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y  V+       K +K   LF +M   G  PDV TY ++I    +A         
Sbjct: 450 PDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSW 509

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +  +G +  + T+ +L+ AY+    L  A  I   M +       +     ++    
Sbjct: 510 FDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLC- 568

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK---TFAPNSRIYTTLMKGYMNEGRVSDT 232
              G+     EV+EKL+  S N  S+         T APN   Y  L+ G     +VSD 
Sbjct: 569 -KAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDA 627

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L AM         P+ + Y  ++    K G +D A++V   MT+ G   +  TY  L
Sbjct: 628 HELLDAMLAA---GCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSL 684

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +    +  ++D A ++L EM +D+   P+VV+Y  +IDG   + +   AL   + M  +G
Sbjct: 685 IDRMFKDGRLDLAMKVLSEMLNDS-CNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKG 743

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            +P  ++YT L+     + +   + K+F +M        + V + +L+   C  GL++EA
Sbjct: 744 CSPNVVTYTALIDGLGKTGKADASLKLFKQM-NSKGCAPNYVTYRVLINHCCAAGLLDEA 802

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS 439
             +++ MK   +  ++  Y     G S
Sbjct: 803 HLLLDEMKHTHWPKHLQGYHCAVQGFS 829



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 192/489 (39%), Gaps = 93/489 (19%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCAR-----AS 107
             P+ + +N++++   N G      +LF++M   G+ P  + YN+ I  +C +     A 
Sbjct: 337 CNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAE 396

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
              L+  V E +L     L      +      G G  E A  I++ M             
Sbjct: 397 LLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEM------------- 443

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                                                + K F P++  YT ++       
Sbjct: 444 -------------------------------------MRKGFVPDTSTYTKVITFLCQAK 466

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           +V  +  +   M+R   N   PD  TYT ++ +  KAG +++AR    EM  +G   N +
Sbjct: 467 KVEKSFLLFQEMKRAGVN---PDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVV 523

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-------------- 333
           TY  LL  Y +  Q+ +A ++   M  DA   P+ V+Y+ LIDG                
Sbjct: 524 TYTALLHAYLKSKQLIQAHDIFHRMV-DAACYPNAVTYSALIDGLCKAGEIQKACEVYEK 582

Query: 334 LIDDSAGALT--FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           LI  S    +  +F       IAP  ++Y  L+     + +   A+++ D ML     + 
Sbjct: 583 LIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLA-AGCEP 641

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           + + ++ L++G+C++G ++ A+ +  RM + G+ P+V TY SL   I    K G   L  
Sbjct: 642 NQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSL---IDRMFKDGRLDLAM 698

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           K + E              L     P+     A+ D   +     KAL +++ MEE G  
Sbjct: 699 KVLSEM-------------LNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCS 745

Query: 512 PNKTKYKKI 520
           PN   Y  +
Sbjct: 746 PNVVTYTAL 754



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 194/473 (41%), Gaps = 78/473 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P   A++  +  +    +   + + +L D+V K   +      V + K +TA 
Sbjct: 367 MTTCGSPPGYVAYNIFIGSICGQEE---LPNAELLDLVEKVYEEMLAASCVLN-KVNTAN 422

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++  L     +GK +K  Q+  +M   G  PD  TY  +I    +A +      + + + 
Sbjct: 423 FSRCL---CGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMK 479

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + T+  L+ ++   G +E A +    MR                         
Sbjct: 480 RAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMR------------------------- 514

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                         S+  S           PN   YT L+  Y+   ++   ++      
Sbjct: 515 --------------SVGCS-----------PNVVTYTALLHAYLKSKQL---IQAHDIFH 546

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT----------------RIGVPA 284
           R  D A +P+ VTY+ ++  L KAG + +A +V  ++                    +  
Sbjct: 547 RMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAP 606

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N +TY  L+ G C+  ++  A ELL  M   A  EP+ + Y+ LIDGF  I     A   
Sbjct: 607 NVVTYGALIDGLCKAQKVSDAHELLDAML-AAGCEPNQIVYDALIDGFCKIGKIDNAQEV 665

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F  M   G  P+  +YT+L+       +  LA KV  EML D     ++V +  +++G  
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDS-CNPNVVTYTAMIDGLS 724

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++G +E+A  ++  M+E G  PNV TY +L +G+    K   +L L+K++  +
Sbjct: 725 KVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSK 777



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 122/542 (22%), Positives = 211/542 (38%), Gaps = 99/542 (18%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N ++  C   G   + L+   ++ +FG +P  +TYN ++++ A A +  +   V + +  
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G  +  +T      A    G    A  +++        V        L + S  NE   
Sbjct: 233 SGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMS 292

Query: 182 DDDDEVFEKLLPNSINPSS--EPPLLPKTFA---------------PNSRIYTTLMKGYM 224
                     +PN +   +     L  K F                PN  ++ +L+ GY 
Sbjct: 293 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYC 352

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA------------------------ 260
           N G  +   ++     R     S P +V Y   + +                        
Sbjct: 353 NAGDYAYAYKLF---NRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEML 409

Query: 261 -----------------LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                            L   G  ++A Q+L EM R G   +  TY  ++   CQ  +++
Sbjct: 410 AASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVE 469

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           K+  L +EM   A + PDV +Y ILID F        A ++F+EMR+ G +P  ++YT L
Sbjct: 470 KSFLLFQEM-KRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTAL 528

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM---- 419
           + A+  S Q   A+ +F  M+ D     + V ++ L++G C+ G +++A  + E++    
Sbjct: 529 LHAYLKSKQLIQAHDIFHRMV-DAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTS 587

Query: 420 --KENGFY----------PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
              E+ FY          PNV TYG+L +G+  A+K  +A  L                 
Sbjct: 588 GNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELL---------------- 631

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           D+ L    +P++ + DAL D   +      A E+   M + G  P+       Y  +  R
Sbjct: 632 DAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPS----VHTYTSLIDR 687

Query: 528 MF 529
           MF
Sbjct: 688 MF 689



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 199/510 (39%), Gaps = 75/510 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G  P V  ++ ++     +G             ++++ R + D        P+   
Sbjct: 478 MKRAGVNPDVYTYTILIDSFCKAG-------------LIEQARSWFDEMRSVGCSPNVVT 524

Query: 61  YNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           Y A+L+A     K K+ +Q   +F +M +    P+ +TY+ +I    +A        V E
Sbjct: 525 YTALLHA---YLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYE 581

Query: 118 RILEM-----------GITLC-----MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
           +++             G   C     + T+ +L+        +  A  ++ AM     + 
Sbjct: 582 KLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEP 641

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE-------------------- 201
            +I+ +  ++ +     G  D+  EVF ++      PS                      
Sbjct: 642 NQIVYDALIDGFC--KIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 699

Query: 202 --PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
               +L  +  PN   YT ++ G    G +   + +L  M   E+    P+ VTYT ++ 
Sbjct: 700 VLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLM---EEKGCSPNVVTYTALID 756

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L K G  D + ++  +M   G   N +TY +L+   C    +D+A  LL EM       
Sbjct: 757 GLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEM-KHTHWP 815

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
             +  Y+  + GF        +L    EM +    P    Y  L+ +F+ + + + A ++
Sbjct: 816 KHLQGYHCAVQGF--SKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALEL 873

Query: 380 FDEMLRDPRVKVDIVAWNM---LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             E++ +    +++ +  M   L++  C    VEEA  +   M   G  P++  + SL  
Sbjct: 874 HKELV-EVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVK 932

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G+    K  EAL L      RC    EGVN
Sbjct: 933 GLIEVNKWDEALQL---CYGRCH---EGVN 956



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 18/307 (5%)

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
           R+   L++     G   + +  LG   R +D    P  VTY  +V  L  AG ++   +V
Sbjct: 170 RLLNVLVRRCCRHGLWDEALEELG---RLKDFGYRPSAVTYNALVQVLASAGQVEMGFRV 226

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM+  G   +R T     +  C+  +   A  +L +  +D  +  D V    +I G +
Sbjct: 227 QKEMSASGFCMDRSTIGYFAQALCKVGRWADALNMLEK--EDFNL--DTVLCTQMISGLM 282

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A++F + MR     P  ++Y TL+  F    Q     ++ + M+ +     + 
Sbjct: 283 EASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEG-CNPNP 341

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             +N LV GYC  G    A ++  RM   G  P    Y      I    +   A LL  +
Sbjct: 342 SLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELL--D 399

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           + E+  V +E + A   L      +       +        F KA +I+  M   G  P+
Sbjct: 400 LVEK--VYEEMLAASCVLNKVNTAN------FSRCLCGVGKFEKAFQILKEMMRKGFVPD 451

Query: 514 KTKYKKI 520
            + Y K+
Sbjct: 452 TSTYTKV 458



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           F    R  G + T   Y  L +        + A ++  E+  D R +V     N+LV   
Sbjct: 121 FLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDR-EVLRRLLNVLVRRC 179

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           CR GL +EA   + R+K+ G+ P+  TY +L   ++ A +      + KE+
Sbjct: 180 CRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEM 230


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 203/452 (44%), Gaps = 28/452 (6%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           V  ++  D  +        P++     P  A ++  L+A  + GKP   LQ+F +M    
Sbjct: 102 VSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHAGKPHVALQVFQKMIRLK 161

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVF---VLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
            KP++LT N ++    R      +     V + ++++G++L + TF  LV  Y   G LE
Sbjct: 162 LKPNLLTCNTLLIGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLE 221

Query: 146 IAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDD---DEVFEKLLPNSINPSSE 201
            A  +++ M  E   +   +     L+  S +    D  D   D     L+PN +  ++ 
Sbjct: 222 DALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNL 281

Query: 202 ----------------PPLLPKT-FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                             L+ +T   P+   Y  L+ G  N G + + + ++  M+  + 
Sbjct: 282 VYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLK- 340

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD VTY T++    + G    A++++ +M   GV  N++T+NI LK  C++ + ++
Sbjct: 341 --LQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREE 398

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
               ++E+ +     PD+V+Y+ LI  ++ + D +GAL    EM  +GI    I+  T++
Sbjct: 399 VTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTIL 458

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            A     +   A+ + D   +   + VD V +  L+ GY R   VE+A  + + MK    
Sbjct: 459 DALCKERKVDEAHNLLDSAHKRGYI-VDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKI 517

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            P V T+ SL  G+    K   A+  + E+ E
Sbjct: 518 TPTVTTFNSLIGGLCHHGKTELAMEKFDELAE 549



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/466 (22%), Positives = 208/466 (44%), Gaps = 48/466 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M ++  LP +  ++ +++ +  +G     E ++L DV+ K ++           +PD   
Sbjct: 301 MKQTNILPDLCTYNILINGVCNAG--SIREGLELMDVM-KSLK----------LQPDVVT 347

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN +++ C  LG   +  +L +QM   G KP+ +T+N+ +K LC    R+ +   V E +
Sbjct: 348 YNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELV 407

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G +  + T+ +L+ AY+  GDL  A  +++ M +    +  I     L+    E + 
Sbjct: 408 EMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKV 467

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D+  +       L +S +         + +  +   Y TL+ GY  E +V     M   M
Sbjct: 468 DEAHN-------LLDSAH--------KRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEM 512

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +R +     P   T+ +++  L   G  + A +   E+   G+  +  T+N ++ GYC++
Sbjct: 513 KRIKIT---PTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKE 569

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +++KA E   E    +  +PD  + NIL++G      +  AL FFN +       T ++
Sbjct: 570 GRVEKAFEFYNESIKHS-FKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREVDT-VT 627

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T++ AF    + K A  +  EM  + R++ D   +N ++      G + EA  ++++ 
Sbjct: 628 YNTMISAFCKDKKLKEAYDLLSEM-EEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKF 686

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
                      +GS+   + L  +   A    KE     E+K E +
Sbjct: 687 S--------GKFGSMKRNLHLETEKNPATSESKE-----ELKTEAI 719



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 58/310 (18%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK---AGSM 267
           P+  ++   +  Y++ G+    +++   M R +     P+ +T  T++  LV+   + S+
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLK---LKPNLLTCNTLLIGLVRYPSSFSI 185

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             AR+V  +M +IGV  +  T+N+L+ GYC + +++ A  +L  M  +  + PD V+YN 
Sbjct: 186 ASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNT 245

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           ++         +       +M+  G+ P +++Y                           
Sbjct: 246 ILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTY--------------------------- 278

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
                    N LV GYC++G ++EA +I+E MK+    P++ TY  L NG+  A    E 
Sbjct: 279 ---------NNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREG 329

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           L L   +K                   L+PD    + L D C       +A +++  ME 
Sbjct: 330 LELMDVMKSL----------------KLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMEN 373

Query: 508 HGIPPNKTKY 517
            G+ PN+  +
Sbjct: 374 DGVKPNQVTH 383



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/478 (20%), Positives = 197/478 (41%), Gaps = 59/478 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN ++     LG  K+  Q+ + M +    PD+ TYN++I     A      + +
Sbjct: 273 PNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLEL 332

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++ +  + +   + T+ +L+      G    A+ +++ M        ++   + L+    
Sbjct: 333 MDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCK 392

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E     +  +EV  K+         +  +    F+P+   Y TL+K Y+  G +S  + M
Sbjct: 393 E-----EKREEVTRKV---------KELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEM 438

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              MR         + +T  T++ AL K   +D A  +L    + G   + +TY  L+ G
Sbjct: 439 ---MREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMG 495

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y ++ +++KA E+  EM    KI P V ++N LI G      +  A+  F+E+   G+ P
Sbjct: 496 YFREEKVEKAFEMWDEMKR-IKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLP 554

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDP---------------------------- 387
              ++ +++  +    + + A + ++E ++                              
Sbjct: 555 DDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFF 614

Query: 388 -----RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
                  +VD V +N ++  +C+   ++EA  ++  M+E    P+  TY S+   +    
Sbjct: 615 NTLITEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDG 674

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL--------DALADICVRA 492
           K  EA  L K+   +    K  ++ +++  P     +E L        D + ++C R 
Sbjct: 675 KLSEADELLKKFSGKFGSMKRNLHLETEKNPATSESKEELKTEAIAYSDVINELCSRG 732


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 219/493 (44%), Gaps = 45/493 (9%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK-HLLVFV 115
           D  AY +++ A  + G+ ++ + +F +M E G KP ++TYNV++ +  +     + +V +
Sbjct: 199 DVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGL 258

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++R+   GI     T+ +L++        E A  +++ M+       K+     L+ Y  
Sbjct: 259 VDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGK 318

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                  +  EV +++  N   PS                Y +L+  Y  +G + D + +
Sbjct: 319 SRR--SKEAMEVLQEMEGNGCPPS-------------IVTYNSLISAYARDGLLEDALEL 363

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M    +    PD  TYTT++S   KAG    A Q+  EM   G   N  T+N L+K 
Sbjct: 364 KNQM---VEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKM 420

Query: 296 YCQQLQIDKAKELLREMAD--DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           +  +    K  E+++   D    +  PD+V++N L+  F      +     F EM+  G 
Sbjct: 421 HGNR---GKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGF 477

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P + ++ TL+ +++       A  V+  ML +  V  D+ ++N ++    R GL ++++
Sbjct: 478 VPERDTFNTLISSYSRCGSFDQAMAVYKRML-EAGVNPDLSSYNAVLAALARGGLWKQSE 536

Query: 414 RIIERMKENGFYPNVATYGSL----ANGISLARKPGEALLLWKEIKE------------- 456
           +++  MK+    PN  TY SL    ANG  + R    A  ++  I E             
Sbjct: 537 KVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVN 596

Query: 457 -RCEVKKEGVNADSDL-PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
            +C++  E   A  +L      PD   L+A+  I  R     KA EI+ CM+  G  P+ 
Sbjct: 597 SKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSL 656

Query: 515 TKYKKIYVEMHSR 527
           T Y  + + M+SR
Sbjct: 657 TTYNSL-MYMYSR 668



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 123/563 (21%), Positives = 232/563 (41%), Gaps = 99/563 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD+  YN +++ C      ++   +  +M   G  PD +TYN ++ +  ++ R    + V
Sbjct: 269 PDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEV 328

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G    + T+ SL++AY   G LE A  +   M E      K I+  D+  Y++
Sbjct: 329 LQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVE------KGIKP-DVFTYTT 381

Query: 176 -----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                E  G D    ++FE++                   PN   +  L+K + N G+ +
Sbjct: 382 LLSGFEKAGKDKAAVQIFEEMRNEGCK-------------PNICTFNALIKMHGNRGKFT 428

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +++   ++  +     PD VT+ T++S   + G       V  EM R G    R T+N
Sbjct: 429 EMMKVFEDIKTFQ---CSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 485

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+  Y +    D+A  + + M  +A + PD+ SYN ++           +     EM+ 
Sbjct: 486 TLISSYSRCGSFDQAMAVYKRML-EAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKD 544

Query: 351 RGIAPTKISYTTLMKAFA----LSSQPKLANKVFDEMLRDPRVKV--------------- 391
               P +++Y +L+ A+A    +     LA +++  ++ +PR  +               
Sbjct: 545 GRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGII-EPRAVLLKTLVLVNSKCDLLM 603

Query: 392 ----------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
                           DI   N +V  Y R  +V +A  I++ MK  GF P++ TY SL 
Sbjct: 604 ETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM 663

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK------------------P 477
              S +     +  + +EI  +  ++ + ++ ++ +    +                  P
Sbjct: 664 YMYSRSANFERSEEILREILAK-GIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGP 722

Query: 478 DEELLDALADICVRAA--FFRKALEIVACMEEHGIPPNKTKYKKI---YVEMHSR----M 528
             +++     I   AA   F +A+++V  M +HG  PN++ Y  I   Y +++ R    M
Sbjct: 723 APDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASM 782

Query: 529 FTSK------HASQARQDRRRER 545
           F +       H S   + R  ER
Sbjct: 783 FVNNLRKLDPHISMDEECRLSER 805



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 173/408 (42%), Gaps = 37/408 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y  +L+     GK K  +Q+F++M   G KP++ T+N +IK+     +   ++ 
Sbjct: 373 KPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMK 432

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFG-DLEIAETIVQAMREG---RRDVCKIIRELDL 170
           V E I     +  + T+ +L++ +   G D E++    +  R G    RD    +    +
Sbjct: 433 VFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTL----I 488

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINP--SSEPPLLP------------KTFA------ 210
             YS    G  D    V++++L   +NP  SS   +L             K  A      
Sbjct: 489 SSYS--RCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR 546

Query: 211 --PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN   Y +L+  Y N   +    RM             P  V   T+V    K   + 
Sbjct: 547 CKPNELTYCSLLHAYANGKEIE---RMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLM 603

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
              +   E+ + G   +  T N ++  Y ++  + KA E+L  M       P + +YN L
Sbjct: 604 ETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGG-FTPSLTTYNSL 662

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +  +    +   +     E+ A+GI P  ISY T++ A+  + + + A++V  EM R+  
Sbjct: 663 MYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEM-RESG 721

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
              DI+ +N  +  Y    +  EA  ++  M ++G  PN +TY S+ +
Sbjct: 722 PAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVD 769



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 145/357 (40%), Gaps = 69/357 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G++P    ++T++S  +  G          FD  +   ++  +  +     PD ++
Sbjct: 472 MKRAGFVPERDTFNTLISSYSRCGS---------FDQAMAVYKRMLEAGV----NPDLSS 518

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI----------KLCARA---- 106
           YNAVL A A  G  K+  ++  +M +   KP+ LTY  ++          ++CA A    
Sbjct: 519 YNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIY 578

Query: 107 ------------------SRKHLLVFVLERILEM---GITLCMTTFQSLVAAYVGFGDLE 145
                             S+  LL+      LE+   G +  +TT  ++V+ Y     + 
Sbjct: 579 SGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVA 638

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            A  I+  M+ G       +   +   Y      + +  +E+  ++L   I P       
Sbjct: 639 KANEILDCMKRG--GFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRP------- 689

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                 +   Y T++  Y   GR+ D  R+L  MR   ++   PD +TY T +++     
Sbjct: 690 ------DIISYNTVIYAYCRNGRMRDASRVLSEMR---ESGPAPDIITYNTFIASYAADS 740

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
               A  V+  M + G   N+ TYN ++  YC+  + D+A   +  +    K++P +
Sbjct: 741 MFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL---RKLDPHI 794



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 51/269 (18%), Positives = 108/269 (40%), Gaps = 26/269 (9%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAK-ELLREMADDAKIEPDVVSYNIL--IDGFILI 335
           R+  P  RI   ++   +    QID+   EL  +   ++    + +S ++L  + G    
Sbjct: 82  RLSPPGQRILQTLIDPTF-NLAQIDELLLELFEQQPGESDFSVESLSLDVLGIVKGLGFY 140

Query: 336 DDSAGALTFFNEMRARGIAPTKISYT---TLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                AL  F  +R R  +   ++ +    ++       +   A  +   + +D    VD
Sbjct: 141 KKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDG-FDVD 199

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           + A+  ++  +   G   EA  + ++M+E G  P + TY  + N        G+  + W 
Sbjct: 200 VYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVY------GKMGMPWN 253

Query: 453 EIKERCE-VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           ++    + +K  G+           PD    + L   C R   + +A  ++  M+  G  
Sbjct: 254 KMVGLVDRMKSAGI----------APDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFS 303

Query: 512 PNKTKYKKIYVEMHSRMFTSKHASQARQD 540
           P+K  Y  + ++++ +   SK A +  Q+
Sbjct: 304 PDKVTYNAL-LDVYGKSRRSKEAMEVLQE 331


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 150/295 (50%), Gaps = 9/295 (3%)

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           L+  +I    E PL  +  AP++  Y+TLM G   E R+ + V +L  M+ +    + P+
Sbjct: 185 LVDKAIEVFREIPL--RNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVE---GTFPN 239

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            V +  ++SAL K G + RA +++  M   G   N +TYN L+ G C + +++KA  LL 
Sbjct: 240 LVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLN 299

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           +M  + K  P+ V++  LI+GF++   ++        + ARG    +  Y++L+      
Sbjct: 300 QMVSN-KCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKE 358

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
            +   A +++ EM+       + + ++ L++G CR G ++EA+  +  MK  G+ PN  T
Sbjct: 359 GKFNQAMELWKEMV-GKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFT 417

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           Y SL  G   A    +A+L+WKE+     +  E     S L   L  D + ++AL
Sbjct: 418 YSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEV--CYSILINGLCKDGKFMEAL 470



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 198/447 (44%), Gaps = 45/447 (10%)

Query: 10  VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS---KPDTAAYNAVLN 66
           VK++++V++ +   G         LF+    R  +F +  + S S    P+   +N V+ 
Sbjct: 132 VKSFNSVLNVIVQEG---------LFN----RALEFYNHVVASKSLNIHPNALTFNLVIK 178

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
           A   LG   K +++F ++      PD  TY+ ++    +  R    V +L+ +   G   
Sbjct: 179 AMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFP 238

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIV---------------QAMREGRRDVCKIIRELDLE 171
            +  F  L++A    GDL  A  +V                A+  G     K+ + + L 
Sbjct: 239 NLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLL 298

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEP-------PLLPKTFAPNSRIYTTLMKGYM 224
           +    N+   +D    F  L+   +              L  +    N  +Y++L+ G  
Sbjct: 299 NQMVSNKCVPND--VTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLC 356

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
            EG+ +  + +   M  +      P+ + Y+ ++  L + G +D AR  L+EM   G   
Sbjct: 357 KEGKFNQAMELWKEMVGK---GCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLP 413

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N  TY+ L++GY +     KA  + +EMA++  I  + V Y+ILI+G         AL  
Sbjct: 414 NSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNE-VCYSILINGLCKDGKFMEALMV 472

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKVDIVAWNMLVEGY 403
           + +M +RGI    ++Y++++  F  ++  +   K+F++ML + P V+ D++ +N+L+  +
Sbjct: 473 WKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAF 532

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVAT 430
           C    +  A  I+  M + G  P+  T
Sbjct: 533 CIQKSIFRAIDILNIMLDQGCDPDFIT 559



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 18/273 (6%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           HP+ +T+  V+ A+ + G +D+A +V  E+       +  TY+ L+ G C++ +ID+A  
Sbjct: 167 HPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVS 226

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           LL EM  +    P++V++N+LI       D   A    + M  +G  P +++Y  L+   
Sbjct: 227 LLDEMQVEGTF-PNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGL 285

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            L  + + A  + ++M+ +  V  D V +  L+ G+   G   +  R++  ++  G   N
Sbjct: 286 CLKGKLEKAVSLLNQMVSNKCVPND-VTFGTLINGFVMQGRASDGTRVLVSLEARGHRGN 344

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
              Y SL +G+    K  +A+ LWKE+                +     P+  +  AL D
Sbjct: 345 EYVYSSLISGLCKEGKFNQAMELWKEM----------------VGKGCGPNTIVYSALID 388

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R     +A   ++ M+  G  PN   Y  +
Sbjct: 389 GLCREGKLDEARGFLSEMKNKGYLPNSFTYSSL 421



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 153/373 (41%), Gaps = 38/373 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P++ A++ ++S L   GD G             R  K  D   +    P+   YNA+
Sbjct: 235 GTFPNLVAFNVLISALCKKGDLG-------------RAAKLVDNMFLKGCVPNEVTYNAL 281

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK---LCARASRKHLLVFVLERILE 121
           ++     GK +K + L +QM      P+ +T+  +I    +  RAS    ++  LE    
Sbjct: 282 VHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGH 341

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G       + SL++     G    A  + + M         I+    ++    E + D+
Sbjct: 342 RGNEY---VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDE 398

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                 F   + N            K + PNS  Y++LM+GY   G   D+ + +   + 
Sbjct: 399 ARG---FLSEMKN------------KGYLPNSFTYSSLMRGYFEAG---DSHKAILVWKE 440

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             +N    + V Y+ +++ L K G    A  V  +M   G+  + + Y+ ++ G+C    
Sbjct: 441 MANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANL 500

Query: 302 IDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++  +L  +M      ++PDV++YNIL++ F +      A+   N M  +G  P  I+ 
Sbjct: 501 VEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITC 560

Query: 361 TTLMKAFALSSQP 373
              +K    +  P
Sbjct: 561 DIFLKTLRENMNP 573



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 136/320 (42%), Gaps = 30/320 (9%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
            L K F    + Y    K ++ E  V    RM G  + ++   S      + +V++ +V+
Sbjct: 94  FLEKNFIVMFKAYG---KAHLPEKAVDLFHRMWGEFQCKQTVKS------FNSVLNVIVQ 144

Query: 264 AGSMDRARQVLAEMT---RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
            G  +RA +    +     + +  N +T+N+++K  C+   +DKA E+ RE+       P
Sbjct: 145 EGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLR-NCAP 203

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D  +Y+ L+ G    +    A++  +EM+  G  P  +++  L+ A         A K+ 
Sbjct: 204 DNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLV 263

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           D M     V  + V +N LV G C  G +E+A  ++ +M  N   PN  T+G+L NG  +
Sbjct: 264 DNMFLKGCVPNE-VTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVM 322

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             +  +   +   ++ R                  + +E +  +L     +   F +A+E
Sbjct: 323 QGRASDGTRVLVSLEARGH----------------RGNEYVYSSLISGLCKEGKFNQAME 366

Query: 501 IVACMEEHGIPPNKTKYKKI 520
           +   M   G  PN   Y  +
Sbjct: 367 LWKEMVGKGCGPNTIVYSAL 386


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 193/428 (45%), Gaps = 25/428 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YNAVL       +  +   L ++M   G  P+V+T+N +I    R      +  V
Sbjct: 223 PDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQV 282

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDVCK 163
           L ++++ G T  +  + +++      G LE+A  I+  M                + +C 
Sbjct: 283 LAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCS 342

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS--------EPPLLPKTFAPNSRI 215
             R    E+  +E   +D   D+V   +L +    +            +L     P+   
Sbjct: 343 AERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVIT 402

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           YTT++ G+  EG + + V +L +M         P+ ++YT V+  L  A     A  +++
Sbjct: 403 YTTVINGFCKEGLIDEAVMLLKSM---AACGCRPNTISYTIVLKGLCSAERWVDAEDLMS 459

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M   G   N +T+N ++   C++  +++A ELL++M  +    PD++SY+ +IDG    
Sbjct: 460 QMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNG-CSPDLISYSTVIDGLGKA 518

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             +  AL   N M  +G++P  I Y+++  A +   +     ++FD  ++D  ++ D V 
Sbjct: 519 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDN-IQDVTIRSDAVL 577

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N ++   C+ G  + A   +  M  +G  PN +TY  L  G++      EA  +  E+ 
Sbjct: 578 YNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELC 637

Query: 456 ERCEVKKE 463
            +  ++K 
Sbjct: 638 SKGALRKH 645



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/502 (24%), Positives = 215/502 (42%), Gaps = 86/502 (17%)

Query: 57  DTAAYNAVLNA-CANLGKPKKFLQLF-DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           D    N VLNA C   G   + L+L  D    FG  PDV++YN ++K    A R   +  
Sbjct: 187 DVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQD 246

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLEDY 173
           ++E ++ +G    + TF +L+      G  E + + + Q +  G                
Sbjct: 247 LMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHG---------------- 290

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                                P+ R+Y T++ G   EG +    
Sbjct: 291 -----------------------------------CTPDIRMYATVLDGVCKEGHLEVAH 315

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L    R       P+ V Y TV+  L  A   ++A ++LAEM     P + +T+NIL+
Sbjct: 316 EIL---DRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILV 372

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRA 350
             +CQ   + +  ELL +M +   + PDV++Y  +I+GF    LID+   A+     M A
Sbjct: 373 DFFCQNGLVYRVIELLEQMLEHGCV-PDVITYTTVINGFCKEGLIDE---AVMLLKSMAA 428

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G  P  ISYT ++K    + +   A  +  +M+ +     + V +N ++   C+ GLVE
Sbjct: 429 CGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMI-EQGCSPNPVTFNTVINFLCKKGLVE 487

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER------------- 457
           +A  ++++M  NG  P++ +Y ++ +G+  A K  EAL L   +  +             
Sbjct: 488 QAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 547

Query: 458 CEVKKEG-VNA-----DSDLPPPLKPDEELLDA-LADICVRAAFFRKALEIVACMEEHGI 510
             + KEG +N      D+     ++ D  L +A ++ +C R    R A+E +A M   G 
Sbjct: 548 SALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDR-AIEFLAYMVSSGC 606

Query: 511 PPNKTKYKKIYVEMHSRMFTSK 532
            PN++ Y  +   + S  F  +
Sbjct: 607 MPNESTYTILIRGLASEGFVKE 628



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 135/311 (43%), Gaps = 18/311 (5%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y  +++     GR++D + +L  MRR+      P +        +    G    A
Sbjct: 113 PNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSA 172

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQ-LQIDKAKELLREMADDAKIEPDVVSYNILI 329
            +VL ++   G   +    N++L   C Q   +D+A  LLR++      +PDVVSYN ++
Sbjct: 173 VRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVL 232

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G  +            EM   G  P  +++ TL+     +   +  ++V  +M+ D   
Sbjct: 233 KGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMV-DHGC 291

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             DI  +  +++G C+ G +E A  I++RM   G  PNV  Y ++  G+  A +      
Sbjct: 292 TPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAER------ 345

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            W++ +   E+  E  + D  L      D+   + L D   +     + +E++  M EHG
Sbjct: 346 -WEQAE---ELLAEMFDNDCPL------DDVTFNILVDFFCQNGLVYRVIELLEQMLEHG 395

Query: 510 IPPNKTKYKKI 520
             P+   Y  +
Sbjct: 396 CVPDVITYTTV 406



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 174/417 (41%), Gaps = 65/417 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           M+R G  P+V  ++T++  L  +G             D G    ++++  V+  V K   
Sbjct: 251 MVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGH 310

Query: 48  PDIVSDS---------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            ++  +          KP+   YN VL    +  + ++  +L  +M +     D +T+N+
Sbjct: 311 LEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNI 370

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-G 157
           ++    +    + ++ +LE++LE G    + T+ +++  +   G ++ A  ++++M   G
Sbjct: 371 LVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430

Query: 158 RR-----------DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
            R            +C   R +D ED  S+                           ++ 
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVDAEDLMSQ---------------------------MIE 463

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +  +PN   + T++     +G V   + +L  M     N   PD ++Y+TV+  L KAG 
Sbjct: 464 QGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLL---NGCSPDLISYSTVIDGLGKAGK 520

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            D A ++L  M   G+  N I Y+ +     ++ +I++  ++   +  D  I  D V YN
Sbjct: 521 TDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNI-QDVTIRSDAVLYN 579

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            +I        +  A+ F   M + G  P + +YT L++  A     K A ++  E+
Sbjct: 580 AVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTEL 636



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 28/238 (11%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN ++ GYC+  Q+  A    R +A    + P+  +Y  ++         A AL+  +EM
Sbjct: 86  YNAMVSGYCRAGQLASA----RRLAASVPVPPNAYTYFPVVRALCARGRIADALSVLDEM 141

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR---VKVDIVAWNMLVEGYC- 404
           R RG AP    Y  +++A A S       +    +L+D       +D+   N+++   C 
Sbjct: 142 RRRGCAPIPPMYHVILEA-ACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCD 200

Query: 405 RMGLVEEAKRIIERMKEN-GFYPNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKK 462
           + G V+EA R++  +  + G  P+V +Y ++  G+ +A++ G    L +E ++  C    
Sbjct: 201 QGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGC---- 256

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    PP +     L+  L     R   F +  +++A M +HG  P+   Y  +
Sbjct: 257 ---------PPNVVTFNTLIGYLC----RNGLFERVHQVLAQMVDHGCTPDIRMYATV 301


>gi|297808491|ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317966|gb|EFH48388.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 588

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 203/448 (45%), Gaps = 66/448 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLRSG++P +   + +++ L   G       ++  D +V+ +R+           P+  +
Sbjct: 145 MLRSGFIPGLIMHNHLLNGLCKLG------YIEKADGLVREMREMG-------PSPNCVS 191

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YN ++    ++    K L LF  ++++G KP+ +T N+++  LC +    +    +LE I
Sbjct: 192 YNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVIGNNNTKLLEEI 251

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L+           S V A      L+I               C I+ +      S    G
Sbjct: 252 LD----------SSQVNA-----PLDIV-------------TCTILMD------SCFKNG 277

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           +     EV++++               K    +S +Y  +++G  + G   + V   G M
Sbjct: 278 NVVQALEVWKEMSQ-------------KNVPTDSVVYNVIIRGLCSSG---NMVAAYGFM 321

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                   +PD  TY T++SAL KAG  D A  +   M  +GV  ++I+Y ++++G C Q
Sbjct: 322 CDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVIIQGLCIQ 381

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +D+A E L+ M   + + P+V+ +N++IDG+    D++ AL+  N M + G+ P   +
Sbjct: 382 GDVDRANEFLQSMLKRSLL-PEVLLWNVVIDGYGRYGDTSCALSVLNLMLSYGVKPNVYT 440

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
              L+  +    +   A  V +EM R  ++  D   +N+LV   C +G +  A ++ + M
Sbjct: 441 NNALIHGYVKGGRLIDAWWVKNEM-RSTKIHPDTTTYNLLVGAACTLGHLRLAFQLYDEM 499

Query: 420 KENGFYPNVATYGSLANGISLARKPGEA 447
            + G  P++ TY  L  G+    +  EA
Sbjct: 500 LKRGCQPDIITYTELVRGLCWKGRLKEA 527



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 25/285 (8%)

Query: 242 QEDNASHPDHVT-YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           Q  N  + D ++ +++++  L   G MD A  +  +M R G     I +N LL G C+  
Sbjct: 109 QTKNFEYDDSLSIHSSIMRDLCLQGKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLG 168

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            I+KA  L+REM +     P+ VSYN LI G   +++   AL  F+ +   GI P +++ 
Sbjct: 169 YIEKADGLVREMREMGP-SPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTC 227

Query: 361 TTLMKAFALSSQPKLAN---KVFDEMLRDPRVK--VDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++   AL  +  + N   K+ +E+L   +V   +DIV   +L++   + G V +A  +
Sbjct: 228 NIIVH--ALCQKGVIGNNNTKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEV 285

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            + M +     +   Y  +  G+      G  +  +  +   C++ K GVN         
Sbjct: 286 WKEMSQKNVPTDSVVYNVIIRGLC---SSGNMVAAYGFM---CDMVKRGVN--------- 330

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            PD    + L     +A  F  A ++   M+  G+ P++  YK I
Sbjct: 331 -PDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVI 374



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 133/313 (42%), Gaps = 23/313 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L   F P   ++  L+ G    G +    +  G +R   +    P+ V+Y T++  L  
Sbjct: 145 MLRSGFIPGLIMHNHLLNGLCKLGYIE---KADGLVREMREMGPSPNCVSYNTLIKGLCS 201

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI-DKAKELLREMADDAKIEP-- 320
             ++D+A  + + + + G+  NR+T NI++   CQ+  I +   +LL E+ D +++    
Sbjct: 202 VNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVIGNNNTKLLEEILDSSQVNAPL 261

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D+V+  IL+D      +   AL  + EM  + +    + Y  +++    S     A    
Sbjct: 262 DIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVYNVIIRGLCSSGNMVAAYGFM 321

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            +M++   V  D+  +N L+   C+ G  + A  +   M+  G  P+  +Y  +  G+ +
Sbjct: 322 CDMVKRG-VNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVIIQGLCI 380

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
                           + +V +      S L   L P+  L + + D   R      AL 
Sbjct: 381 ----------------QGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTSCALS 424

Query: 501 IVACMEEHGIPPN 513
           ++  M  +G+ PN
Sbjct: 425 VLNLMLSYGVKPN 437



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 21/329 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D      ++++C   G   + L+++ +M +     D + YNV+I+ LC+  +      F+
Sbjct: 262 DIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVYNVIIRGLCSSGNMVAAYGFM 321

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +++ G+   + T+ +L++A    G  ++A  +   M+       +I  ++ ++    
Sbjct: 322 CD-MVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVIIQGLCI 380

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +  GD D  +E  + +L  S        LLP+       ++  ++ GY   GR  DT   
Sbjct: 381 Q--GDVDRANEFLQSMLKRS--------LLPEVL-----LWNVVIDGY---GRYGDTSCA 422

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +         P+  T   ++   VK G +  A  V  EM    +  +  TYN+L+  
Sbjct: 423 LSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLVGA 482

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C    +  A +L  EM      +PD+++Y  L+ G         A +  + M+  GI  
Sbjct: 483 ACTLGHLRLAFQLYDEMLKRG-CQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSGITM 541

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEML 384
             + +  L+K +    +P  A  V+ + L
Sbjct: 542 DHVPFLILVKKYTRLQRPDEAYLVYKKWL 570



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 24/161 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESV-----------------KLFDVVVKRVR 43
           ML+   LP V  W+ V+      GD     SV                  L    VK  R
Sbjct: 394 MLKRSLLPEVLLWNVVIDGYGRYGDTSCALSVLNLMLSYGVKPNVYTNNALIHGYVKGGR 453

Query: 44  KFSDPDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
                 + ++ +     PDT  YN ++ A   LG  +   QL+D+M + G +PD++TY  
Sbjct: 454 LIDAWWVKNEMRSTKIHPDTTTYNLLVGAACTLGHLRLAFQLYDEMLKRGCQPDIITYTE 513

Query: 99  MIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
           +++ LC +   K     +L R+   GIT+    F  LV  Y
Sbjct: 514 LVRGLCWKGRLKE-AESLLSRMQVSGITMDHVPFLILVKKY 553


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 209/525 (39%), Gaps = 135/525 (25%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVK-RVRKFSDPDIVSDSKPDTAAY 61
           R G  P ++A + V+S L+ S    P  S+ +F  +++ R+             P+   +
Sbjct: 164 RRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLH------------PNHYTF 211

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N +++   + G     L     M  FG  PD +TYN ++    R         +L R+  
Sbjct: 212 NLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKR 271

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            GI     T+ +LV+A+   G ++ A  +V++M                  Y  E     
Sbjct: 272 DGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTA----------------YGFE----- 310

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                                        P+ R Y  L  G    G+V +  R+   M R
Sbjct: 311 -----------------------------PDLRTYNVLAVGLCQAGKVDEAFRLKDEMER 341

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
              + + PD VTY T+V A  K      A ++L EM   GV    +T+NI++K  C++ +
Sbjct: 342 L--STALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGK 399

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA----------- 350
           +++A   L ++A++  + PDV++YN LID +    + A A T  +EM             
Sbjct: 400 LEEALGKLEKIAEEG-LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLN 458

Query: 351 ------------------------RGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-- 384
                                   RG  P ++SY T+M A+     P+ A +++D+M+  
Sbjct: 459 TVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIER 518

Query: 385 -----------------RDPRVKVDI---------------VAWNMLVEGYCRMGLVEEA 412
                            R  R+K  I                 +N+++  YC+ G +E A
Sbjct: 519 KLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENA 578

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            R   +M EN F P+V T  +L NG+ L  K  +AL L++   E+
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEK 623



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 192/443 (43%), Gaps = 59/443 (13%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           +S + PD   YN +++AC         L+L ++M + G KP ++T+N+++K   +  +  
Sbjct: 342 LSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLE 401

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR---------- 159
             +  LE+I E G+   + T+ +L+ AY   G++  A T++  M  +G +          
Sbjct: 402 EALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVL 461

Query: 160 -DVCKIIRELDLED--YSSENEGDDDDDDEVFEKLLPNSINPSSEPPL------LPKTFA 210
            ++CK+ R  D E+  +S    G   D+      +       + EP L      + +   
Sbjct: 462 YNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLI 521

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y TL+KG     R+ + +  L  +    +    PD  TY  ++ A  K G ++ A
Sbjct: 522 PSISTYNTLIKGLCRMERLKEAIDKLNELV---EKGLVPDETTYNIIIHAYCKEGDLENA 578

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +   +M       + +T N L+ G C   ++DKA +L     +  K + DV++YN LI 
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGK-KVDVITYNTLIQ 637

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA--------------LSSQPKLA 376
               + D   AL FF++M  +G+ P   +Y  ++ A +              L+   KL+
Sbjct: 638 SMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLS 697

Query: 377 NKVFDEMLR--------------DPRVKVDIVAWNMLVEGY-------CRMGLVEEAKRI 415
                 +L+               P  +    A +  +E Y       C  G ++EAK +
Sbjct: 698 QSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAV 757

Query: 416 IERMKENGFYPNVATYGSLANGI 438
           ++ M + G   + +TY +L  G+
Sbjct: 758 LDEMMQKGMPVDSSTYITLMEGL 780



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 192/464 (41%), Gaps = 66/464 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P    ++T+VS  A  G              +K+  K  +       +PD   
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLG-------------WIKQATKVVESMTAYGFEPDLRT 315

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFG-AKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           YN +       GK  +  +L D+M     A PDV+TYN ++  C +       + +LE +
Sbjct: 316 YNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEM 375

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+   + T   +V +    G LE A   ++ + E                       
Sbjct: 376 RDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAE----------------------- 412

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM---- 235
                    E L P+ I  ++      K  A N     TLM   + +G   DT  +    
Sbjct: 413 ---------EGLAPDVITYNTLIDAYCK--AGNVAKAFTLMDEMVGKGLKMDTFTLNTVL 461

Query: 236 --LGAMRRQEDNAS--H--------PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
             L  M+R ED     H        PD V+Y TV++A  K  + + A ++  +M    + 
Sbjct: 462 YNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLI 521

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            +  TYN L+KG C+  ++ +A + L E+ +   + PD  +YNI+I  +    D   A  
Sbjct: 522 PSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLV-PDETTYNIIIHAYCKEGDLENAFR 580

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           F N+M      P  ++  TLM    L  +   A K+F+  +   + KVD++ +N L++  
Sbjct: 581 FHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGK-KVDVITYNTLIQSM 639

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           C++G V+ A    + M+  G  P+  TY  + + +S A +  EA
Sbjct: 640 CKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEA 683



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 112/263 (42%), Gaps = 17/263 (6%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           HP+H T+  +V      G++  A   L+ M   G+  + +TYN LL  +C++  + +A+ 
Sbjct: 205 HPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARA 264

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           LL  M  D  I P   +YN L+  F  +     A      M A G  P   +Y  L    
Sbjct: 265 LLARMKRDG-IAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGL 323

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + +   A ++ DEM R      D+V +N LV+   +     +A R++E M++ G  P 
Sbjct: 324 CQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPT 383

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + T+  +   +    K  EAL   ++I E      EG          L PD    + L D
Sbjct: 384 LVTHNIVVKSLCKEGKLEEALGKLEKIAE------EG----------LAPDVITYNTLID 427

Query: 488 ICVRAAFFRKALEIVACMEEHGI 510
              +A    KA  ++  M   G+
Sbjct: 428 AYCKAGNVAKAFTLMDEMVGKGL 450



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 16/197 (8%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           ++ P+  ++N+L+         A AL   + M+  G++P  ++Y TL+ A         A
Sbjct: 203 RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 262

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +   M RD  +      +N LV  + R+G +++A +++E M   GF P++ TY  LA 
Sbjct: 263 RALLARMKRD-GIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAV 321

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+  A K  EA  L  E+ ER                   PD    + L D C +     
Sbjct: 322 GLCQAGKVDEAFRLKDEM-ERLSTA--------------LPDVVTYNTLVDACFKWRCSS 366

Query: 497 KALEIVACMEEHGIPPN 513
            AL ++  M + G+ P 
Sbjct: 367 DALRLLEEMRDKGVKPT 383


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 143/307 (46%), Gaps = 18/307 (5%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  LM  ++  GRV D V +       +     PD  ++  V+  + K G + +A +++ 
Sbjct: 201 YNKLMDLFIGHGRVQDAVALFEGW--IQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVE 258

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   + +T+NIL+ G C+  ++ K +E+LR +  D    P+VV+Y  +I G+   
Sbjct: 259 RMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKA 318

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A+  +N+M A G +P  ++Y  L+  +  +     A  V+ +M+   R   D+V 
Sbjct: 319 GRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILR-RCLPDVVT 377

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++GYCR G +++A +I   M +    PN  T+  + +      + GEAL   K++ 
Sbjct: 378 FSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMN 437

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            R ++                P   + + + D+  +     +A  I+  MEE G  P+K 
Sbjct: 438 MRTDI---------------APQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKY 482

Query: 516 KYKKIYV 522
            Y  + +
Sbjct: 483 TYTILII 489



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 174/415 (41%), Gaps = 44/415 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           P   +Y  V++     G+    LQLFDQM  + G  P+    + +   CA A        
Sbjct: 125 PSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAA 184

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------RDV 161
           +L +  + G ++    +  L+  ++G G ++ A  + +   +G              + V
Sbjct: 185 LLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGV 244

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
           CK+              GD     E+ E++                  +P++  +  L+ 
Sbjct: 245 CKV--------------GDVQKALELVERMDEFGC-------------SPDTVTHNILVN 277

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G      VS    +L   R Q D    P+ VTYT+V+S   KAG M+ A  V  +M  +G
Sbjct: 278 GLCRAKEVSKGREVL--RRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVG 335

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              N +TYN+L+ GY +   +  A  + ++M    +  PDVV+++ LIDG+        A
Sbjct: 336 TSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILR-RCLPDVVTFSSLIDGYCRCGQLDDA 394

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           +  + EM    I P   ++  ++  F   ++   A     +M     +      +N +++
Sbjct: 395 MKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVID 454

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             C+ G V+EA  I+  M+E G  P+  TY  L  G  +  +  EA+  + ++ E
Sbjct: 455 VLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVE 509



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 139/323 (43%), Gaps = 25/323 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD  ++N V+     +G  +K L+L ++M EFG  PD +T+N+++    RA        
Sbjct: 231 SPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGRE 290

Query: 115 VLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           VL R+   G+  CM    T+ S+++ Y   G +E A  +   M         +   + + 
Sbjct: 291 VLRRLQRDGV--CMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLIN 348

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y     G+      V+++++              +   P+   +++L+ GY   G++ D
Sbjct: 349 GYG--KAGNMGSAVAVYQQMIL-------------RRCLPDVVTFSSLIDGYCRCGQLDD 393

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT-RIGVPANRITYN 290
            +++   M +       P+  T+  ++    K      A   L +M  R  +      YN
Sbjct: 394 AMKIWTEMAQYH---IQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYN 450

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++   C+  ++D+A  +L EM ++    PD  +Y ILI G  +    A A+TFF++M  
Sbjct: 451 PVIDVLCKGGKVDEANMILIEM-EEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVE 509

Query: 351 RGIAPTKISYTTLMKAFALSSQP 373
            G +P  I   + +     S  P
Sbjct: 510 TGCSPDSIVVNSFISCLLKSGMP 532



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 20/311 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++  Y  ++      GR +D +++   M  Q  +   P+    + +  +   AG +D A
Sbjct: 125 PSAHSYRYVISLMCQSGRHTDALQLFDQMTDQ--SGYFPNARFLSFLSGSCAAAGLLDAA 182

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L++ ++ G       YN L+  +    ++  A  L           PDV S+N++I 
Sbjct: 183 AALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIK 242

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G   + D   AL     M   G +P  +++  L+     + +     +V   + RD    
Sbjct: 243 GVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCM 302

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++V +  ++ GYC+ G +E+A  +   M   G  PNV TY  L NG   A   G A+ +
Sbjct: 303 PNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAV 362

Query: 451 WKE-IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           +++ I  RC                  PD     +L D   R      A++I   M ++ 
Sbjct: 363 YQQMILRRC-----------------LPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYH 405

Query: 510 IPPNKTKYKKI 520
           I PN   +  I
Sbjct: 406 IQPNAHTFCII 416



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 78/166 (46%)

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
           +++ +P +  +Y  ++   CQ  +   A +L  +M D +   P+    + L         
Sbjct: 119 SQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGL 178

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A    ++    G +    +Y  LM  F    + + A  +F+  ++      D+ ++N
Sbjct: 179 LDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFN 238

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++++G C++G V++A  ++ERM E G  P+  T+  L NG+  A++
Sbjct: 239 VVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKE 284


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 200/471 (42%), Gaps = 87/471 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+ SG +P V  ++T +S L  +G  D  +E ++  D      R    PD+V+       
Sbjct: 178 MIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMD------RGGIPPDVVT------- 224

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            + ++++      +     Q+F  M E G  PD LTY++M+   +RA+R   +  VLE +
Sbjct: 225 -FCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHM 283

Query: 120 LEM--GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
             M  G  + + T  + + A    G   +A+ I+  M          I    L +  S N
Sbjct: 284 QAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGM----------IESGSLPNLLSYN 333

Query: 178 --------EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                    G+ DD  ++  K+L +                P+   + TL+ G+   GR+
Sbjct: 334 FVIDGLCKSGNVDDAWKLSRKMLDSG------------CCKPDVIFFNTLISGFCKAGRL 381

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           S   ++L  M+ +  N   PD VTY T++    K GS+ +A+ +L EM  +G   N +TY
Sbjct: 382 SQAHQLLIEMKAK--NICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTY 439

Query: 290 NILLKGYCQQLQIDKAKELLREMA------------------------------------ 313
             L+ GY +    ++A+ L  EM+                                    
Sbjct: 440 AALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKN 499

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ- 372
             +   PD ++Y ILIDG+   +D+   LT   EM ARG +    +Y  L+   A + + 
Sbjct: 500 KTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEV 559

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           P  A  V+ +ML    V    + +N LV  + R G V  A+ +++ M E G
Sbjct: 560 PSKALAVYQQMLDQDCVPSASI-FNSLVRLFLRTGDVNSARSMVQEMNEKG 609



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/515 (22%), Positives = 214/515 (41%), Gaps = 73/515 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +GY   V  ++T++  L  SGD          D     ++K +D    +   P+   
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGD---------LDAAQALLQKMAD----AGCAPNVVT 47

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++      +P   +Q   +M   G +PD++TYN +I     A+R      VL+ ++
Sbjct: 48  YTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELV 107

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL-----EDYSS 175
             G      T+ +LV        L+ A  +++ M   R  VC ++  +D      E    
Sbjct: 108 RNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMIL-RGSVCNLVVYIDCIFGFCEARCQ 166

Query: 176 ENEGDDDDDDEVFEK-LLPNSINPSSEPPLLPKT-----------------FAPNSRIYT 217
            +  +  D DE+ E   +P+ +  ++    L K                    P+   + 
Sbjct: 167 SSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFC 226

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQE------------DNASHPDHV------------- 252
           +++ G     R+ D  ++   M  +             DN S  + +             
Sbjct: 227 SIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAM 286

Query: 253 ---------TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                    T+   + AL ++G    A+ +L  M   G   N ++YN ++ G C+   +D
Sbjct: 287 KAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVD 346

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTT 362
            A +L R+M D    +PDV+ +N LI GF      + A     EM+A+ I  P  ++Y T
Sbjct: 347 DAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNT 406

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+   +     K A  +  EM +    K ++V +  L+ GY + G+ EEA+ + + M   
Sbjct: 407 LIDGQSKFGSLKQAKLLLQEM-QAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAK 465

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           G +P++ TY ++ +  S A    +A  +++++K +
Sbjct: 466 GCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNK 500



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 137/311 (44%), Gaps = 21/311 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN   YT L+ G     R  D ++ +  M R   +   PD VTY +++  L  A  MD 
Sbjct: 42  APNVVTYTALIDGLCKARRPHDAIQTVKRMLR---SGCEPDLVTYNSLIHGLCMANRMDD 98

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  VL E+ R G   N ITY+ L+   C++ ++D+A+ L+REM     +  ++V Y   I
Sbjct: 99  AGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSV-CNLVVYIDCI 157

Query: 330 DGFI--LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
            GF       S       +EM   G  P  ++Y T +     + +     ++ +EM R  
Sbjct: 158 FGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGG 217

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            +  D+V +  ++ G C+   +++A ++ + M E G  P+  TY  + + +S A +    
Sbjct: 218 -IPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANR---- 272

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           L    E+ E  +  K G   +      +      + AL     R+  F  A  I+  M E
Sbjct: 273 LDTVDEVLEHMQAMKAGCVME------VYTHNAFIGALC----RSGKFPLAKNILLGMIE 322

Query: 508 HGIPPNKTKYK 518
            G  PN   Y 
Sbjct: 323 SGSLPNLLSYN 333



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 22/223 (9%)

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +  VV+Y  LIDG     D   A     +M   G AP  ++YT L+     + +P  A +
Sbjct: 7   DASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQ 66

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
               MLR    + D+V +N L+ G C    +++A  +++ +  NGF PN  TY +L    
Sbjct: 67  TVKRMLRSG-CEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWN 125

Query: 439 SLARKPGEALLLWKEI--------------------KERCEVKK-EGVNADSDLPPPLKP 477
              R+  +A  L +E+                    + RC+  + E  + D  +     P
Sbjct: 126 CRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIP 185

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D    +       +A    K LE++  M+  GIPP+   +  I
Sbjct: 186 DVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSI 228


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 199/456 (43%), Gaps = 64/456 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   +  ++      G   K L+L + M  FG  P+ + YN ++    R  R      
Sbjct: 179 KPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEK 238

Query: 115 VLERILEMGITLCMTTFQSLVAAYVG----------FGDLEIAETI---------VQAMR 155
           ++E++ E G+   + TF S ++A             F D+E+ E +            M 
Sbjct: 239 LVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEV--------FEKLLPNSINPSSEPPL--- 204
           +G    CK+     LED  +  E   ++DD V         + L+ +     +E  L   
Sbjct: 299 KG---FCKVGL---LEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQM 352

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           + K   P+   Y  LM G    G +SD   ++G M+R   N   PD VTY  ++      
Sbjct: 353 IDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKR---NGVSPDAVTYGCLLHGYCSV 409

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +D A+ +L EM R     N  T NILL       +I +A+ELLR+M ++     D V+
Sbjct: 410 GKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKM-NEKGYGLDTVT 468

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIA-----------------------PTKISYT 361
            NI++DG     +   A+     MR  G A                       P  I+Y+
Sbjct: 469 CNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYS 528

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           TL+     + +   A  +F EM+ + +++ D +A+N+ +  +C+ G +  A R+++ M++
Sbjct: 529 TLLNGLCKAGRFAEAKTLFAEMMGE-KLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEK 587

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            G + ++ TY SL  G+ +  +  E   L  E++E+
Sbjct: 588 KGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREK 623



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 120/539 (22%), Positives = 229/539 (42%), Gaps = 44/539 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL-----CARAS 107
           ++KP    YN +L +C    + +    L+  M   G  P+  T+N++I+      C  A+
Sbjct: 107 ENKPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAA 166

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
           R+     + + + E G      TF  LV  Y   G  +    ++ +M        K++  
Sbjct: 167 RE-----LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYN 221

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
             +  +    EG +DD +++ EK+         E  L+P     NSRI + L K    EG
Sbjct: 222 TIVSSFC--REGRNDDSEKLVEKM--------REEGLVPDIVTFNSRI-SALCK----EG 266

Query: 228 RVSDTVRMLGAMRRQED-NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           +V D  R+   M   E      P+ +TY  ++    K G ++ A+ +   +       + 
Sbjct: 267 KVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSL 326

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            +YNI L+G  +  +  +A+ +L++M D   I P + SYNIL+DG   +   + A T   
Sbjct: 327 QSYNIWLQGLVRHGKFIEAETVLKQMIDKG-IGPSIYSYNILMDGLCKLGMLSDAKTIVG 385

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M+  G++P  ++Y  L+  +    +   A  +  EM+R+  +  +    N+L+     M
Sbjct: 386 LMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLP-NAYTCNILLHSLWNM 444

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE--- 463
           G + EA+ ++ +M E G+  +  T   + +G+  + +  +A+ + K ++           
Sbjct: 445 GRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLG 504

Query: 464 ----GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
               G+  DS +     PD      L +   +A  F +A  + A M    + P+   Y  
Sbjct: 505 NSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYN- 563

Query: 520 IYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFW------LGLPNSYYGSEWRLDPM 572
             + +H      K +S  R  +  E+K   ++ + +      LG+ N  +     +D M
Sbjct: 564 --IFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEM 620



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 101/457 (22%), Positives = 191/457 (41%), Gaps = 58/457 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDI---VSDSKPD 57
           M   G +P +  +++ +S L   G             V+   R FSD ++   +   +P+
Sbjct: 243 MREEGLVPDIVTFNSRISALCKEGK------------VLDASRIFSDMELDEYLGLPRPN 290

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           +  YN +L     +G  +    LF+ + E      + +YN+ ++   R  +      VL+
Sbjct: 291 SITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLK 350

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           ++++ GI   + ++  L+      G L  A+TIV  M+        +     L  Y S  
Sbjct: 351 QMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCS-- 408

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G  D    + ++++ N+               PN+     L+    N GR+S+   +L 
Sbjct: 409 VGKVDAAKSLLQEMMRNNC-------------LPNAYTCNILLHSLWNMGRISEAEELL- 454

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA------------- 284
             R+  +     D VT   +V  L  +G +D+A +++  M   G  A             
Sbjct: 455 --RKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD 512

Query: 285 ----------NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
                     + ITY+ LL G C+  +  +AK L  EM  + K++PD ++YNI I  F  
Sbjct: 513 DSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGE-KLQPDSLAYNIFIHHFCK 571

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
               + A     +M  +G   +  +Y +L+    + +Q    + + DEM R+  +  +I 
Sbjct: 572 QGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEM-REKGISPNIC 630

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
            +N  ++  C  G VE+A  +++ M +    PNV ++
Sbjct: 631 TYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSF 667



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 170/434 (39%), Gaps = 71/434 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  +L+   ++GK      L  +M      P+  T N+++       R      +
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEEL 453

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++ E G  L   T   +V    G G+L+ A  IV+ MR        +     L +  +
Sbjct: 454 LRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMR--------VHGSAALGNLGN 505

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSE-----------------PPLLPKTFAPNSRIYTT 218
              G  DD   +    LP+ I  S+                    ++ +   P+S  Y  
Sbjct: 506 SYIGLVDDS-LIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNI 564

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
            +  +  +G++S   R+L  M ++     H    TY +++  L     +     ++ EM 
Sbjct: 565 FIHHFCKQGKISSAFRVLKDMEKK---GCHKSLETYNSLILGLGIKNQIFEIHGLMDEMR 621

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD- 337
             G+  N  TYN  ++  C+  +++ A  LL EM     I P+V S+  LI  F  + D 
Sbjct: 622 EKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQ-KNIAPNVFSFKYLIGAFCKVPDF 680

Query: 338 --------SAGALT---------FFNEMRARG--IAPTKISYTTLMKAFALSS------- 371
                   +A ++           FNE+ A G  +  T++    L + F L +       
Sbjct: 681 DMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLV 740

Query: 372 -------QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                  + ++A+ +  +M+ D     D  A   +++G  +MG  +EA    E+M E   
Sbjct: 741 VSLCKKDELEVASGILHKMI-DKGYGFDPAALMPVIDGLGKMGNKKEANNFAEKMME--- 796

Query: 425 YPNVATYGSLANGI 438
              +A+ G +AN +
Sbjct: 797 ---MASVGEVANKV 807


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 200/467 (42%), Gaps = 71/467 (15%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++N    +G  +K L +F ++ E G  P V++Y  +I +  +  +    + V + + 
Sbjct: 416 YHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMME 475

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   M T+  L+  ++   D   A T                               
Sbjct: 476 SAGIKHNMKTYSMLINGFLKLKDWTNAFT------------------------------- 504

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 VFE ++ + + P             +  +Y  ++K +   G +   + M+  M+
Sbjct: 505 ------VFEDVIKDGLKP-------------DVVLYNNIIKAFCGMGNMDRAIHMVKEMQ 545

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      P   T+  ++    +AG M RA ++   M R G      T+N L+ G  ++ 
Sbjct: 546 KKRH---RPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKR 602

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q++KA E+L EMA  A + PD  +Y  +++G+  + D+  A  +F ++R  G+     +Y
Sbjct: 603 QMEKAVEILDEMA-LAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTY 661

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S + + A  V  EM     +  +   +N+L++G+ R G V EA  ++++MK
Sbjct: 662 EALLKACCKSGRMQSALAVTREM-SAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 720

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  P++ TY S  N      K G+ L   K I+   E++  GV          KP+ +
Sbjct: 721 QEGVQPDIHTYTSFINACC---KAGDMLRATKTIQ---EMEALGV----------KPNVK 764

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
               L      A+   KAL     M+  G+ P+K  Y  +   + SR
Sbjct: 765 TYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSR 811



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 168/384 (43%), Gaps = 39/384 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   +Y  ++N    +GK  K L++   M   G K ++ TY+++I    +         V
Sbjct: 446 PSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTV 505

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDL 170
            E +++ G+   +  + +++ A+ G G+++ A  +V+ M++ R     R    II     
Sbjct: 506 FEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPII----- 560

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEP------PLLPK----------------T 208
             +     G+     E+F+ +  +   P+          L+ K                 
Sbjct: 561 --HGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAG 618

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +P+   YTT+M GY   G   DT +      +  +     D  TY  ++ A  K+G M 
Sbjct: 619 VSPDEHTYTTIMNGYAALG---DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 675

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V  EM+   +P N   YNIL+ G+ ++  + +A +L+++M  +  ++PD+ +Y   
Sbjct: 676 SALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG-VQPDIHTYTSF 734

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+      D   A     EM A G+ P   +YTTL+  +A +S P+ A + F+EM +   
Sbjct: 735 INACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEM-KLAG 793

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEA 412
           +K D   ++ L+        V EA
Sbjct: 794 LKPDKAVYHCLMTSLLSRATVAEA 817



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 197/467 (42%), Gaps = 49/467 (10%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           V D++P+   + AV++A   + KP +         EFG         +M+   AR    H
Sbjct: 279 VLDTQPEN--WQAVVSAFERIKKPAR--------REFG---------LMVGYYARRGDMH 319

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
                 E +   GI      + SL+ AY    D+E A + V+ M+E   ++  +   + +
Sbjct: 320 RARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVV 379

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             ++     D   + +  E L+        + P+          IY T+M GY     + 
Sbjct: 380 GGFAKIGNADQSCNMDRAESLVREMEEEGIDAPI---------DIYHTMMNGYT---MIG 427

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  + L   +R ++    P  ++Y  +++   K G + +A +V   M   G+  N  TY+
Sbjct: 428 NEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYS 487

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           +L+ G+ +      A  +  ++  D  ++PDVV YN +I  F  + +   A+    EM+ 
Sbjct: 488 MLINGFLKLKDWTNAFTVFEDVIKDG-LKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQK 546

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +   PT  ++  ++  FA + + + A ++FD M R   +   +  +N LV G      +E
Sbjct: 547 KRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPT-VHTFNALVLGLVEKRQME 605

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A  I++ M   G  P+  TY ++ NG +     G+A   + ++      + EG      
Sbjct: 606 KAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKL------RNEG------ 653

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
               L+ D    +AL   C ++   + AL +   M    IP N   Y
Sbjct: 654 ----LELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVY 696



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 149/349 (42%), Gaps = 28/349 (8%)

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSI-NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           DY S+   + +   + F K+L     N  +      +   P  R +  ++  Y   G + 
Sbjct: 260 DYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKPARREFGLMVGYYARRGDMH 319

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              +   +MR +     +P    YT+++ A      M+ A   + +M   GV  + +TY+
Sbjct: 320 RARQTFESMRVR---GIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYS 376

Query: 291 ILLKGYC------QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           I++ G+       Q   +D+A+ L+REM ++  I+  +  Y+ +++G+ +I +    L  
Sbjct: 377 IVVGGFAKIGNADQSCNMDRAESLVREMEEEG-IDAPIDIYHTMMNGYTMIGNEEKCLIV 435

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F  ++  G AP+ ISY  L+  +    +   A +V  +M+    +K ++  ++ML+ G+ 
Sbjct: 436 FKRLKECGFAPSVISYGCLINMYTKMGKVSKALEV-SKMMESAGIKHNMKTYSMLINGFL 494

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG 464
           ++     A  + E + ++G  P+V  Y ++            A+ + KE++++       
Sbjct: 495 KLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRH----- 549

Query: 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                      +P       +     RA   R+ALEI   M   G  P 
Sbjct: 550 -----------RPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPT 587



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 144/350 (41%), Gaps = 45/350 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD----IVSD--- 53
           ML +G+L  +K W+   +       DG    V L++ ++K      + D    +V +   
Sbjct: 488 MLINGFLK-LKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQK 546

Query: 54  --SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
              +P +  +  +++  A  G+ ++ L++FD M   G  P V T+N ++       +   
Sbjct: 547 KRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEK 606

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDL 170
            V +L+ +   G++    T+ +++  Y   GD   A E   +   EG         ELD+
Sbjct: 607 AVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEG--------LELDV 658

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-------FAPNSRIYTTLMKGY 223
             Y               E LL            L  T          N+ +Y  L+ G+
Sbjct: 659 FTY---------------EALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGW 703

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
              G V +   ++  M+++      PD  TYT+ ++A  KAG M RA + + EM  +GV 
Sbjct: 704 ARRGDVWEAADLMQQMKQE---GVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVK 760

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            N  TY  L+ G+      +KA     EM   A ++PD   Y+ L+   +
Sbjct: 761 PNVKTYTTLIHGWACASLPEKALRCFEEM-KLAGLKPDKAVYHCLMTSLL 809



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/305 (19%), Positives = 108/305 (35%), Gaps = 66/305 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG +P V  ++ +V         G VE  ++   V     +  D   ++   PD   
Sbjct: 579 MRRSGCIPTVHTFNALVL--------GLVEKRQMEKAV-----EILDEMALAGVSPDEHT 625

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N  A LG   K  + F ++   G + DV TY  ++K C ++ R    + V   + 
Sbjct: 626 YTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMS 685

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              I      +  L+  +   GD+  A  ++Q M++                     EG 
Sbjct: 686 AQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ---------------------EG- 723

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P+   YT+ +      G   D +R    ++
Sbjct: 724 ----------------------------VQPDIHTYTSFINACCKAG---DMLRATKTIQ 752

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E     P+  TYTT++     A   ++A +   EM   G+  ++  Y+ L+     + 
Sbjct: 753 EMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRA 812

Query: 301 QIDKA 305
            + +A
Sbjct: 813 TVAEA 817



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK--LCARASRKHLL 112
           +PD   Y + +NAC   G   +  +   +M   G KP+V TY  +I    CA    K L 
Sbjct: 725 QPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALR 784

Query: 113 VFVLERILEM----GITLCMTTF----QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
            F   ++  +     +  C+ T      ++  AY+  G L I   ++++         ++
Sbjct: 785 CFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSGILSICREMIES---------EL 835

Query: 165 IRELDLEDYSSEN----EGDDDDDDEVFEKLLPNSINPSSEP 202
             ++    Y S+     EG   +  E  +K  P   N    P
Sbjct: 836 TVDMGTAVYWSKCLRKIEGTGGELTEALQKTFPPDWNAHHSP 877


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 214/503 (42%), Gaps = 95/503 (18%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           V+  +PD   YNA+L+      +PK+ +++  QM     +P V+TYN ++    R     
Sbjct: 278 VAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLE 337

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDVC------ 162
             + +  ++++ GI   + T+ +L++ +V  G  E+A  + + MR+   + ++C      
Sbjct: 338 DALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALI 397

Query: 163 -------------KIIRELDLEDYSSE------------NEGDDDDDDEVFEKLLPNSIN 197
                        K+ +E+ +   S +              G D +   VFE++  +   
Sbjct: 398 KMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSR-- 455

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                      FAP    + TL+  Y   GR     + + A +R  +    PD  TY  V
Sbjct: 456 -----------FAPERDTFNTLISAY---GRCGSFDQAMAAYKRMLEAGVSPDLSTYNAV 501

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           ++ L + G  +++ +VLAEM   G   N +TY+ LL  Y    ++++   L  E+     
Sbjct: 502 LATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGT- 560

Query: 318 IEPDVVSYNILIDGFILIDDSAGALT----FFNEMRARGIAP------------------ 355
               + ++ +L+   +L++     L      F E R RGI+P                  
Sbjct: 561 ----IKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMV 616

Query: 356 -----------------TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
                            +  SY +LM  ++ +     + ++F E+L D  ++ D++++N+
Sbjct: 617 PKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREIL-DKGIEPDVISYNI 675

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKER 457
           ++  YCR  +++EAKRIIE MK     P+V TY +     +      EA+ ++   IK+ 
Sbjct: 676 VIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQG 735

Query: 458 CEVKKEGVNADSDLPPPLKPDEE 480
           C+      N+  D    LK  +E
Sbjct: 736 CKPNHNTYNSIVDWYCKLKLRDE 758



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 204/493 (41%), Gaps = 76/493 (15%)

Query: 55  KPDTAAYNAVLNACANLGKP-KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           +P    YNA+LN    +G P  K + L   M   G  PD+ TYN +I  C   S     +
Sbjct: 211 EPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEAL 270

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            + E I   G      T+ +L+  Y                 + RR              
Sbjct: 271 DLFEEIKVAGFRPDAVTYNALLDVY----------------GKSRRP------------- 301

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                    +  EV +++  NS             F P+   Y +L+  Y+  G + D +
Sbjct: 302 --------KEAMEVLKQMESNS-------------FRPSVVTYNSLVSAYVRGGLLEDAL 340

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +    R+  D    PD  TYTT++S  V AG  + A +V  EM ++G   N  T+N L+
Sbjct: 341 VL---KRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALI 397

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           K Y  + + ++  ++ +E+    K  PD+V++N L+  F      +     F EM+    
Sbjct: 398 KMYGDRGKFEEMVKVFKEI-KVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRF 456

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           AP + ++ TL+ A+        A   +  ML +  V  D+  +N ++    R GL E+++
Sbjct: 457 APERDTFNTLISAYGRCGSFDQAMAAYKRML-EAGVSPDLSTYNAVLATLARGGLWEQSE 515

Query: 414 RIIERMKENGFYPNVATYGSL----ANGISLARKPGEALLLWK-EIKERCEVKKEGV--N 466
           +++  MK+ G  PN  TY SL    ANG  + R    A  ++   IK    + K  V  N
Sbjct: 516 KVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVN 575

Query: 467 ADSDL------------PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           +  DL               + PD    +A+  I  R     KA EI+  M E G+  + 
Sbjct: 576 SKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSL 635

Query: 515 TKYKKIYVEMHSR 527
           T Y  + + M+SR
Sbjct: 636 TSYNSL-MYMYSR 647



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 6/231 (2%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           GRVS    +L  +   E +    D   YT++++A         A +V  +M  +G     
Sbjct: 158 GRVSRAASLLHNL---EADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTL 214

Query: 287 ITYNILLKGYCQQ-LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
           ITYN +L  Y +  +   K   L+++M     + PD+ +YN LI           AL  F
Sbjct: 215 ITYNAILNVYGKMGMPWAKIIALVQDMKCHG-LAPDLCTYNTLISCCRAGSLYEEALDLF 273

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            E++  G  P  ++Y  L+  +  S +PK A +V  +M      +  +V +N LV  Y R
Sbjct: 274 EEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQM-ESNSFRPSVVTYNSLVSAYVR 332

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            GL+E+A  +  +M + G  P+V TY +L +G   A K   A+ +++E+++
Sbjct: 333 GGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRK 383



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 19/221 (8%)

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +A  LL  +  D   E DV  Y  LI  +        AL  F +M+  G  PT I+Y
Sbjct: 159 RVSRAASLLHNLEADG-FEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITY 217

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG-LVEEAKRIIERM 419
             ++  +     P        + ++   +  D+  +N L+   CR G L EEA  + E +
Sbjct: 218 NAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISC-CRAGSLYEEALDLFEEI 276

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           K  GF P+  TY +L +    +R+P EA+ + K+++                    +P  
Sbjct: 277 KVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESN----------------SFRPSV 320

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              ++L    VR      AL +   M + GI P+   Y  +
Sbjct: 321 VTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTL 361



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 134/355 (37%), Gaps = 63/355 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RS + P    ++T++S     G          FD  +   ++  +  +     PD + 
Sbjct: 451 MKRSRFAPERDTFNTLISAYGRCGS---------FDQAMAAYKRMLEAGV----SPDLST 497

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNAVL   A  G  ++  ++  +M + G KP+ +TY+ ++   A       +  + E I 
Sbjct: 498 YNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIY 557

Query: 121 EMGITLCMTTFQSLVA-------------AYVGFGDLEIAE--TIVQAMRE--GRRDVCK 163
              I       ++LV              A++ F    I+   T   AM    GR+ +  
Sbjct: 558 SGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVP 617

Query: 164 IIRE-----------LDLEDYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK 207
              E           L L  Y+S         +    +++F ++L   I P         
Sbjct: 618 KANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPD-------- 669

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
             + N  IY       M+E +     R++  M+     A  PD VTY T ++A       
Sbjct: 670 VISYNIVIYAYCRNDMMDEAK-----RIIEEMKVP---APVPDVVTYNTFIAAYAADSMF 721

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD-DAKIEPD 321
             A  V+  M + G   N  TYN ++  YC+    D+A   ++ + D D +I  D
Sbjct: 722 VEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQISED 776


>gi|222612848|gb|EEE50980.1| hypothetical protein OsJ_31564 [Oryza sativa Japonica Group]
          Length = 800

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 131/573 (22%), Positives = 243/573 (42%), Gaps = 66/573 (11%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-----KPDTAAYN 62
           P V AWS +V+ +  +     + +  + ++         DP   S+      KP++  +N
Sbjct: 193 PPVAAWSAIVAHMCQTATGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLLMKPNSLTFN 252

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE- 121
            +L A    G  KK  QL + M   G KPDV +  VM ++  +   +  +  +   + E 
Sbjct: 253 IILTASLLFGTTKKAEQLLELMPRIGLKPDVSSLIVMARIYEQNGHRDEIQKLRRHVNEA 312

Query: 122 --MGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----DVCKIIRE------ 167
             +  +     +  L++ ++ FGDL+ A + I+  +++G+      +  K + E      
Sbjct: 313 CGLSESELRQFYDCLLSCHLKFGDLDSAVDMILDMLKKGKNTKRSLEAAKAVLEAVENNK 372

Query: 168 --LDLEDYSSENEGDDDDD---------------DEVFE----------KLLPNSINPSS 200
             L  E     N G  +                 D+ F           KLL + +    
Sbjct: 373 IYLPYEKTKPVNSGSSNKSVCTDSQMLNYISFFKDKSFARLELDARELLKLLSDKLQ--E 430

Query: 201 EPPLLPKTFA---PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           +  L+   +    P   +Y  L+K ++   ++S     L     +ED+    +      V
Sbjct: 431 QVGLVKSEYGILYPTETMYAKLVKAFLEANKISALASFL-VKASKEDSPVSVESSFVVQV 489

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           ++A +  G +++A  +L EM   G+      Y+ LLK YC++   +     L + A  A 
Sbjct: 490 INACISLGWLEQAHDLLDEMRFSGIRVGSTIYSSLLKAYCKEGHHEDDIAALLKDAQQAG 549

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I+ D   Y  LI      +++ GAL  F E+++  I     +   ++     ++   L  
Sbjct: 550 IQLDPSCYEDLIQSRAHHNNTTGALNLFKELKSLNILKAGQNEFEMLVQGCNNNGAALTT 609

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K+ +E+     V   I  WN ++  +C+  L+ +A + + +MK  G  PN  T+ SL  G
Sbjct: 610 KLVEEVRSGHPVNHAIHDWNNVIHFFCKKRLMHDAHKALGKMKALGHTPNAQTFHSLVTG 669

Query: 438 I-SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
             ++  K  E   LW E+K         V A S     +  D+ELLD+L    VR  FF 
Sbjct: 670 YAAVGGKYVEVTDLWGEMK---------VLATSS---SMNFDQELLDSLLYCFVRGGFFL 717

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMF 529
           +A+E++  ME+  +  +K KYK ++++ H  ++
Sbjct: 718 RAMEVIEMMEKGKMFIDKYKYKSLWLKYHRTLY 750


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 213/493 (43%), Gaps = 67/493 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN V+NAC   G  KK L+L  +M E G  PD++T+N+++      ++    +  
Sbjct: 79  PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISY 138

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +    +T    T   ++   V  G    A  +  +MRE RR  C      D+  Y+S
Sbjct: 139 FEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE-RRTKCPP----DVVTYTS 193

Query: 176 ENE-----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   G  ++   +F+ ++   +              PN   Y +L+  Y + G   
Sbjct: 194 IMHSYCIYGQVENCKAIFDLMVAEGVK-------------PNIVAYNSLLGAYASRGMHR 240

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + + +   +++   N   PD V+YT++++A  ++   ++AR+V  +M +     N+++YN
Sbjct: 241 EALAIFNLIKK---NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYN 297

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+  Y     + +A  LL EM  D  I+PDVVS + L+             T     R+
Sbjct: 298 ALIDAYGSAGMLKEAVGLLHEMEKDG-IQPDVVSISTLLAACGRCRQITRIETILEAARS 356

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RGI    ++Y + +K++      + A +++  M R+  VK D V +N+L+ G  ++G   
Sbjct: 357 RGIDLNTVAYNSGIKSYLSFGDYEKALELYTSM-RESNVKPDAVTYNILISGSSKLGKYT 415

Query: 411 EAKRIIE-----------------------RMKENGFYPNVATYGSLANGISLARKPGEA 447
           E+ R  E                        MK++G +P+V TY +L    +       A
Sbjct: 416 ESLRFFEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRA 475

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             L+KE++         VN        + PD  +  +L +   +     + L+++  M++
Sbjct: 476 WDLFKEME---------VNG-------IPPDAIICSSLMEAFNKGGEPERVLQLMEFMKK 519

Query: 508 HGIPPNKTKYKKI 520
             IP N+  Y +I
Sbjct: 520 KSIPLNQKSYFEI 532



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 185/440 (42%), Gaps = 73/440 (16%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           LF +M E+  KPD   YN +I   +RA +    + ++E +L   I    TT+ +++ A  
Sbjct: 33  LFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACG 92

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             G+ + A            ++CK                          K+  N + P 
Sbjct: 93  AAGNWKKA-----------LELCK--------------------------KMTENGVGPD 115

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                       ++ + + L  G      +S    M GA      N +  D  T   ++ 
Sbjct: 116 ---------LVTHNIVLSALKNGAQYSKAISYFEIMKGA------NVT-SDTFTLNIIIH 159

Query: 260 ALVKAGSMDRARQVLAEM--TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
            LVK G    A ++   M   R   P + +TY  ++  YC   Q++  K +   M  +  
Sbjct: 160 CLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEG- 218

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           ++P++V+YN L+  +        AL  FN ++  G+ P  +SYT+L+ A+  S+QP+ A 
Sbjct: 219 VKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAR 278

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +VF++M ++   K + V++N L++ Y   G+++EA  ++  M+++G  P+V +  +L   
Sbjct: 279 EVFNKMKKNS-CKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAA 337

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
               R+      + +  + R  +    V  +S +   L        +  D       + K
Sbjct: 338 CGRCRQITRIETILEAARSR-GIDLNTVAYNSGIKSYL--------SFGD-------YEK 381

Query: 498 ALEIVACMEEHGIPPNKTKY 517
           ALE+   M E  + P+   Y
Sbjct: 382 ALELYTSMRESNVKPDAVTY 401



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 142/326 (43%), Gaps = 47/326 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS-------- 52
           M+  G  P++ A+++++   A+ G     E++ +F+++ K   +   PDIVS        
Sbjct: 214 MVAEGVKPNIVAYNSLLGAYASRGMHR--EALAIFNLIKKNGLR---PDIVSYTSLLNAY 268

Query: 53  -------------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
                                KP+  +YNA+++A  + G  K+ + L  +M + G +PDV
Sbjct: 269 GRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDV 328

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           ++ + ++  C R  +   +  +LE     GI L    + S + +Y+ FGD E A  +  +
Sbjct: 329 VSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTS 388

Query: 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL--LPKTFA- 210
           MRE       +   + +    S   G   +    FE ++ + ++ + E  L     TF+ 
Sbjct: 389 MRESNVKPDAVTYNILIS--GSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEAESTFSS 446

Query: 211 -------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
                  P+   YTTL++ Y   G      R     +  E N   PD +  ++++ A  K
Sbjct: 447 MKKSGCFPDVLTYTTLIQAYNAGGGWK---RAWDLFKEMEVNGIPPDAIICSSLMEAFNK 503

Query: 264 AGSMDRARQVLAEMTRIGVPANRITY 289
            G  +R  Q++  M +  +P N+ +Y
Sbjct: 504 GGEPERVLQLMEFMKKKSIPLNQKSY 529



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 98/474 (20%), Positives = 193/474 (40%), Gaps = 84/474 (17%)

Query: 27  GPVESVK-LFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85
           G VE+ K +FD++V               KP+  AYN++L A A+ G  ++ L +F+ + 
Sbjct: 202 GQVENCKAIFDLMV-----------AEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIK 250

Query: 86  EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           + G +PD+++Y  ++    R+++      V  ++ +        ++ +L+ AY   G L+
Sbjct: 251 KNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLK 310

Query: 146 IA-----------------------------------ETIVQAMREGRRDVCKIIRELDL 170
            A                                   ETI++A R    D+  +     +
Sbjct: 311 EAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGI 370

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY------- 223
           + Y S   GD +   E++  +  +++ P +    +  + +     YT  ++ +       
Sbjct: 371 KSYLS--FGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSK 428

Query: 224 ---MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
                EG++S+      +M++   +   PD +TYTT++ A    G   RA  +  EM   
Sbjct: 429 VSSTKEGKLSEAESTFSSMKK---SGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVN 485

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+P + I  + L++ + +  + ++  +L+ E      I  +  SY  +I    +I D   
Sbjct: 486 GIPPDAIICSSLMEAFNKGGEPERVLQLM-EFMKKKSIPLNQKSYFEIIASCTMIRDWKT 544

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLAN--KVFDEMLRDPRV----KVDI 393
           A      + +   + + IS  TL      L    K  N  K+F +M+            +
Sbjct: 545 ASEMIEYLDS---SLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTVGLSTYAV 601

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP------NVATYGSLANGISLA 441
           V  N+LV G  R  +      +++ M+++G +P      NV  Y    NG+  A
Sbjct: 602 VLRNLLVVGKWRKYI-----EVLQWMEDSGVHPTLYMFQNVLPYIWRENGMDFA 650


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 154/309 (49%), Gaps = 24/309 (7%)

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY---MNEGRVSDTVRMLGA------ 238
           F +L  N ++ S    +L K + PN    TTL+KG    ++ G + + +  +G       
Sbjct: 105 FSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQ 164

Query: 239 -MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            +RR +     P+ V Y T++ ++ K   ++ A  + +EM   G+  + +TY+ L+ G+ 
Sbjct: 165 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFF 224

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
              ++  A +L  +M  +  I+PDV ++NIL+DGF          T F  M  +GI P  
Sbjct: 225 IVGKLKDAIDLFNKMILE-NIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNV 283

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++Y +LM  + L  Q   AN +F+ M +   V  D  ++N+++ G+C++  V+EA  + +
Sbjct: 284 VTYCSLMDGYCLVKQVNKANSIFNTMAQGG-VNPDTQSYNIMINGFCKIKKVDEAMNLFK 342

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           +M      PNV TY SL +G+  + K   AL L  E+ +R      GV      PP +  
Sbjct: 343 KMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDR------GV------PPDIIT 390

Query: 478 DEELLDALA 486
              +LDAL 
Sbjct: 391 YSSILDALC 399



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/479 (21%), Positives = 205/479 (42%), Gaps = 64/479 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +L +   +      + L  QM   G   +++T N++I   ++  +  L   V
Sbjct: 58  PPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSV 117

Query: 116 LERILEMGI---TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-RDVCKIIRELDLE 171
              IL+ G     + +TT    +   V +G L     I    + G+ R   +++R +D +
Sbjct: 118 FANILKKGYDPNVITLTTLIKGLCLKVSYGTL-----INGLCKVGQARAALQLLRRVDGK 172

Query: 172 DYSSENEGDDDDDDEVFE-KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                    +   D + + KL+  + +  SE  ++ +  +P+   Y+ L+ G+   G++ 
Sbjct: 173 LVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE--MVSEGISPDVVTYSALISGFFIVGKLK 230

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D + +   M  +      PD  T+  +V    K G M   + V A M + G+  N +TY 
Sbjct: 231 DAIDLFNKMILEN---IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYC 287

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ GYC   Q++KA  +   MA    + PD  SYNI+I+GF  I     A+  F +M  
Sbjct: 288 SLMDGYCLVKQVNKANSIFNTMAQGG-VNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHC 346

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + I P  ++YT+L                                    ++G C+ G + 
Sbjct: 347 KNIIPNVVTYTSL------------------------------------IDGLCKSGKIS 370

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC--EVKKEGVNAD 468
            A ++++ M + G  P++ TY S+ + +    +  +A+ L  ++K++   ++  +G N D
Sbjct: 371 YALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLD 430

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
                 +         +   CV+   F +AL +++ ME++G  P+   Y+ I + +  +
Sbjct: 431 VYAYTVM---------IQGFCVK-GLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKK 479



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 141/311 (45%), Gaps = 37/311 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+A+++    +GK K  + LF++M     KPDV T+N+++    +  +      V
Sbjct: 211 PDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTV 270

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +++ GI   + T+ SL+  Y     +  A +I   M +G  +        D + Y+ 
Sbjct: 271 FAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNP-------DTQSYNI 323

Query: 176 ENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
              G       D+   +F+K+               K   PN   YT+L+ G    G++S
Sbjct: 324 MINGFCKIKKVDEAMNLFKKMHC-------------KNIIPNVVTYTSLIDGLCKSGKIS 370

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA--------RQVLAEMTRIGV 282
             ++++  M    D    PD +TY++++ AL K   +D+A         QV  ++   G 
Sbjct: 371 YALKLVDEMH---DRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGY 427

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             +   Y ++++G+C +   ++A  LL +M D+ +I PD  +Y I+I      D++  A 
Sbjct: 428 NLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRI-PDAKTYEIIILSLFKKDENDMAE 486

Query: 343 TFFNEMRARGI 353
               EM ARG+
Sbjct: 487 KLLREMIARGL 497



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 174/401 (43%), Gaps = 45/401 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVES----VKLFDVVVKRVRKFSDPDIVSDSKP 56
           +L+ GY P+V   +T++  L      G + +    V      ++ +R+  D  +V   +P
Sbjct: 121 ILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRV-DGKLV---QP 176

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   YN ++++   +    +   L+ +M   G  PDV+TY+ +I       +    + + 
Sbjct: 177 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLF 236

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSS 175
            +++   I   + TF  LV  +   G ++  +T+    M++G +         ++  Y S
Sbjct: 237 NKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKP--------NVVTYCS 288

Query: 176 ENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             +G       +  + +F  +    +NP ++              Y  ++ G+    +V 
Sbjct: 289 LMDGYCLVKQVNKANSIFNTMAQGGVNPDTQS-------------YNIMINGFCKIKKVD 335

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + + +   M  +      P+ VTYT+++  L K+G +  A +++ EM   GVP + ITY+
Sbjct: 336 EAMNLFKKMHCKN---IIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYS 392

Query: 291 ILLKGYCQQLQIDKAKELLREMADDA-------KIEPDVVSYNILIDGFILIDDSAGALT 343
            +L   C+  Q+DKA  LL ++ D             DV +Y ++I GF +      AL 
Sbjct: 393 SILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALA 452

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
             ++M   G  P   +Y  ++ +     +  +A K+  EM+
Sbjct: 453 LLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMI 493



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 24/235 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   Y ++++    + +  K   +F+ M + G  PD  +YN+MI    +  +    + 
Sbjct: 280 KPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMN 339

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + +++    I   + T+ SL+      G +  A  +V  M + R     II    + D  
Sbjct: 340 LFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHD-RGVPPDIITYSSILDAL 398

Query: 175 SENEGDDDD-------DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
            +N   D          D+VFE L               K +  +   YT +++G+  +G
Sbjct: 399 CKNHQVDKAIALLTKLKDQVFEDLFV-------------KGYNLDVYAYTVMIQGFCVKG 445

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
             ++ + +L  M   EDN   PD  TY  ++ +L K    D A ++L EM   G+
Sbjct: 446 LFNEALALLSKM---EDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 497


>gi|218184544|gb|EEC66971.1| hypothetical protein OsI_33631 [Oryza sativa Indica Group]
          Length = 800

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 131/573 (22%), Positives = 243/573 (42%), Gaps = 66/573 (11%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-----KPDTAAYN 62
           P V AWS +V+ +  +     + +  + ++         DP   S+      KP++  +N
Sbjct: 193 PPVAAWSAIVAHMCQTATGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLLMKPNSLTFN 252

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE- 121
            +L A    G  KK  QL + M   G KPDV +  VM ++  +   +  +  +   + E 
Sbjct: 253 IILTASLLFGTTKKAEQLLELMPRIGLKPDVSSLIVMARIYEQNGHRDEIQKLRRHVNEA 312

Query: 122 --MGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRR-----DVCKIIRE------ 167
             +  +     +  L++ ++ FGDL+ A + I+  +++G+      +  K + E      
Sbjct: 313 CGLSESELRQFYDCLLSCHLKFGDLDSAVDMILDMLKKGKNTKRSLEAAKAVLEAVENNK 372

Query: 168 --LDLEDYSSENEGDDDDD---------------DEVFE----------KLLPNSINPSS 200
             L  E     N G  +                 D+ F           KLL + +    
Sbjct: 373 IYLPYEKTKPVNSGSSNKSVCTDSQMLNYISFFKDKSFARLELDARELLKLLSDKLQ--E 430

Query: 201 EPPLLPKTFA---PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           +  L+   +    P   +Y  L+K ++   ++S     L     +ED+    +      V
Sbjct: 431 QVGLVKSEYGILYPTETMYAKLVKAFLEANKISALASFL-VKASKEDSPVSVESSFVVQV 489

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           ++A +  G +++A  +L EM   G+      Y+ LLK YC++   +     L + A  A 
Sbjct: 490 INACISLGWLEQAHDLLDEMRFSGIRVGSTIYSSLLKAYCKEGHHEDDIAALLKDAQQAG 549

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I+ D   Y  LI      +++ GAL  F E+++  I     +   ++     ++   L  
Sbjct: 550 IQLDPSCYEDLIQSRAHHNNTTGALNLFKELKSLNILKAGQNEFEMLVQGCNNNGAALTT 609

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K+ +E+     V   I  WN ++  +C+  L+ +A + + +MK  G  PN  T+ SL  G
Sbjct: 610 KLVEEVRSGHPVNHAIHDWNNVIHFFCKKRLMHDAHKALGKMKALGHTPNAQTFHSLVTG 669

Query: 438 I-SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
             ++  K  E   LW E+K         V A S     +  D+ELLD+L    VR  FF 
Sbjct: 670 YAAVGGKYVEVTDLWGEMK---------VLATSS---SMNFDQELLDSLLYCFVRGGFFL 717

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMF 529
           +A+E++  ME+  +  +K KYK ++++ H  ++
Sbjct: 718 RAMEVIEMMEKGKMFIDKYKYKSLWLKYHRTLY 750


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 183/424 (43%), Gaps = 31/424 (7%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           V    P+  +YN V+N     G+  K   LF  M + G  P+V+TY ++I    +A    
Sbjct: 197 VRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVD 256

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELD 169
               V +++++ G+   + T+  L+  Y+  G   E+   + +    G    C     L 
Sbjct: 257 RAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLL- 315

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINP----------------------SSEPPLLPK 207
             DY  + +G   +  ++F+ ++   I P                      S    ++  
Sbjct: 316 -LDYLCK-KGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGN 373

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
             +PN  I+  +   +  +  + + + +   MR+Q      P+ V Y T++ AL K G +
Sbjct: 374 GISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQ---GLSPNVVNYATLIDALCKLGRV 430

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           D A     +M   GV  N + +  L+ G C   + +KA EL  EM +   I P+VV +N 
Sbjct: 431 DDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQG-IHPNVVFFNT 489

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           ++           A    + M   G  P  ISY  L++   L  +   A+K+ D ML   
Sbjct: 490 IMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIML-SV 548

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            +K +   +N L+ GYCR G +++A  + + M  NG  P V TY ++ +G+   R+  EA
Sbjct: 549 GLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEA 608

Query: 448 LLLW 451
             L+
Sbjct: 609 KELY 612



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 136/279 (48%), Gaps = 14/279 (5%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN   Y TL+KG+ +E R  + + +L  M   +  +  P+ V+Y TV++     G +D+
Sbjct: 163 TPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDK 222

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +  +MT  G+P N +TY I++ G C+   +D+A+ + ++M D   + P++V+Y  LI
Sbjct: 223 AYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKG-VRPNIVTYTCLI 281

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G++ I      +    EM A G+ P   +Y  L+       +   A K+FD M+R   +
Sbjct: 282 HGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKG-I 340

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           K D+  + +++ GY   G + E    ++ M  NG  PN   +  +    +     GEA+ 
Sbjct: 341 KPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMD 400

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
           ++ +++++             L P +     L+DAL  +
Sbjct: 401 IFNKMRQQ------------GLSPNVVNYATLIDALCKL 427



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 188/449 (41%), Gaps = 36/449 (8%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDG----PVESVKLFDVVVKR-----VRKFSDPDIVS 52
           L  GYL  +  W  VV  L      G          L D + K+      RK  D  I  
Sbjct: 280 LIHGYLS-IGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRK 338

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL- 111
             KPD + Y  +L+  A  G   +     D M   G  P+   +N++   CA A +  + 
Sbjct: 339 GIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIV--FCAFAKKAMIG 396

Query: 112 -LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET-IVQAMREGRRDVCKIIRELD 169
             + +  ++ + G++  +  + +L+ A    G ++ AE    Q + EG      +   L 
Sbjct: 397 EAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLV 456

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
              Y        +   E+F +++   I+P             N   + T+M     EGRV
Sbjct: 457 ---YGLCTIDKWEKAGELFFEMVNQGIHP-------------NVVFFNTIMCNLCTEGRV 500

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
               R++  M R     + PD ++Y  ++      G  D A ++L  M  +G+  N  TY
Sbjct: 501 MKAQRLIDLMERV---GTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTY 557

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N LL GYC+  +ID A  + +EM  +  I P VV+YN ++ G       + A   +  M 
Sbjct: 558 NTLLHGYCRDGRIDDAYSVFQEMLSNG-ITPVVVTYNTILHGLFKTRRFSEAKELYLNMI 616

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G   +  +Y  ++   + ++    A K+F + L    ++VDI+ +N+++    + G  
Sbjct: 617 TSGKQWSIYTYNIILNGLSKNNCVDEALKMF-QSLCSKDLQVDIITFNIMIGALLKDGRK 675

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGI 438
           E+A  +   +  NG  P+V TY  +A  +
Sbjct: 676 EDAMNLFATISANGLVPDVTTYRLIAENL 704



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 109/482 (22%), Positives = 200/482 (41%), Gaps = 46/482 (9%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC---MTTFQSLVA 136
           L  +M E G  P+V++YN ++K     +R    + +L  + +  +  C   + ++ +++ 
Sbjct: 153 LLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVIN 212

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
            +   G ++ A  +   M +       +   + ++        D  +   VF++++   +
Sbjct: 213 GFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEG--VFQQMIDKGV 270

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                         PN   YT L+ GY++ G+  + VRML  M     +   PD  TY  
Sbjct: 271 R-------------PNIVTYTCLIHGYLSIGQWKEVVRMLKEM---SAHGLEPDCFTYGL 314

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++  L K G    AR++   M R G+  +   Y I+L GY  +  + +    L  M  + 
Sbjct: 315 LLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNG 374

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            I P+   +NI+   F        A+  FN+MR +G++P  ++Y TL+ A     +   A
Sbjct: 375 -ISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDA 433

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
              F++M+ +  V  +IV +  LV G C +   E+A  +   M   G +PNV  + ++  
Sbjct: 434 ELKFNQMINEG-VAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMC 492

Query: 437 G-------------ISLARKPG---EALLLWKEIKERCEVKKEGVNA---DSDLPPPLKP 477
                         I L  + G   + +     I+  C V K    +   D  L   LKP
Sbjct: 493 NLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKP 552

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQA 537
           +E   + L     R      A  +   M  +GI P    Y  I   +H  +F ++  S+A
Sbjct: 553 NECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTI---LHG-LFKTRRFSEA 608

Query: 538 RQ 539
           ++
Sbjct: 609 KE 610



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 25/333 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP+   Y+ L+  +   GR+       G + +        D V    ++  L  A  +  
Sbjct: 91  APDVFTYSILVGCFCRMGRLEHGFAAFGLILKT--GWRVNDVVVVNRLLKGLCDAKRVGE 148

Query: 270 ARQVLAE-MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA--KIEPDVVSYN 326
           A  VL   M+ +G   N ++YN LLKG+C + + ++A ELL  MAD       P++VSYN
Sbjct: 149 AMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYN 208

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +I+GF        A   F +M  +GI P  ++YT ++     +     A  VF +M+ D
Sbjct: 209 TVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMI-D 267

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V+ +IV +  L+ GY  +G  +E  R+++ M  +G  P+  TYG L + +    K  E
Sbjct: 268 KGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTE 327

Query: 447 ALLLWKEIKERC---EVKKEGV--------NADSDLPPPL--------KPDEELLDALAD 487
           A  L+  +  +    +V   G+         A S++   L         P+  + + +  
Sbjct: 328 ARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFC 387

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              + A   +A++I   M + G+ PN   Y  +
Sbjct: 388 AFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATL 420



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 94/456 (20%), Positives = 172/456 (37%), Gaps = 42/456 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G  P V  +  ++   A  G              +  +  F D  + +   P+   
Sbjct: 335 MIRKGIKPDVSIYGIILHGYATKG-------------ALSEMHSFLDLMVGNGISPNHYI 381

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N V  A A      + + +F++M + G  P+V+ Y  +I    +  R         +++
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI 441

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMR---------------EGRRD 160
             G+   +  F SLV         E A     E + Q +                EGR  
Sbjct: 442 NEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGR-- 499

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTT 218
           V K  R +DL +           +  +    L    + +S+    +L     PN   Y T
Sbjct: 500 VMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNT 559

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ GY  +GR+ D   +   M     N   P  VTY T++  L K      A+++   M 
Sbjct: 560 LLHGYCRDGRIDDAYSVFQEML---SNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMI 616

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G   +  TYNI+L G  +   +D+A ++ + +     ++ D++++NI+I   +     
Sbjct: 617 TSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSK-DLQVDIITFNIMIGALLKDGRK 675

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A+  F  + A G+ P   +Y  + +        +  + +F EM +      + +  N 
Sbjct: 676 EDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSG-CAPNSLMLNF 734

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           LV      G +  A   + ++ E  F    +T   L
Sbjct: 735 LVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSML 770



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 59/258 (22%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSM--DRARQVLAEMTRIGVPANRITYNILLKGY 296
           M R+   A     +    ++ A  +AGS+  D A ++  E      PA+ I +N LL   
Sbjct: 1   MSRRVSTAVSDRCLELERIIGARARAGSLSVDDALKLFDEFLHHARPASIIAFNQLLAAV 60

Query: 297 CQ----------QLQIDKAKELLREMADDAKIEPDVVSYNILID---------------G 331
                       +L +     ++R+    +K+ PDV +Y+IL+                G
Sbjct: 61  SSASRRGSSSTSELVVSCFNRMIRDCC--SKVAPDVFTYSILVGCFCRMGRLEHGFAAFG 118

Query: 332 FIL------------------------IDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
            IL                        + ++ G L     M   G  P  +SY TL+K F
Sbjct: 119 LILKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGVL--LRRMSELGCTPNVVSYNTLLKGF 176

Query: 368 ALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
              ++ + A ++   M+ D +V+    ++V++N ++ G+   G V++A  +   M + G 
Sbjct: 177 CDENRAEEALELL-HMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGI 235

Query: 425 YPNVATYGSLANGISLAR 442
            PNV TY  + +G+  A+
Sbjct: 236 PPNVVTYTIVIDGLCKAQ 253


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 201/486 (41%), Gaps = 54/486 (11%)

Query: 21  AASGDDGPVESVKLF---------------------DVVVKRVRKFSDPDIV-------- 51
           +A+  DGP  +V+LF                     ++++   R+   P++         
Sbjct: 90  SAACSDGPALAVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLL 149

Query: 52  -SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
            +   PD  +YN +++  +  G+  K  +LF +M E    PDV+TYN +I    +     
Sbjct: 150 RTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMV 209

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
               VLE++++ GI     T+ SL+  Y   G  + +  + + M       C +     +
Sbjct: 210 KSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFI 269

Query: 171 EDYSSEN---EGDDDDDDEVFEKLLPNSINPSS-----------------EPPLLPKTFA 210
                 N   E  D  D  V +   PN I+ S+                    ++ K   
Sbjct: 270 HALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIV 329

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN R +  L+  Y   G +   + +   M   ++    PD VT+ TV+S+L + G +D A
Sbjct: 330 PNHRFFNILINAYARCGMMDKAMLIFEDM---QNKGMIPDTVTFATVISSLCRIGRLDDA 386

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                 M  IGVP +   Y  L++G C   ++ KAKEL+ EM +     P V  ++ +I+
Sbjct: 387 LHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIIN 446

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                   A      + M   G  P  +++ +LM+ + L    + A  + D M     ++
Sbjct: 447 NLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIE 505

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +   +  LV+GYC+ G +++A  +   M   G  P    Y  + +G+  AR+   A  +
Sbjct: 506 PNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKM 565

Query: 451 WKEIKE 456
           + E+ E
Sbjct: 566 FHEMIE 571



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/472 (20%), Positives = 199/472 (42%), Gaps = 35/472 (7%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           +K  +   D  ++   KP+  +Y+ +L+  A  G       L + M   G  P+   +N+
Sbjct: 278 IKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNI 337

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I   AR       + + E +   G+     TF +++++    G L+ A      M +  
Sbjct: 338 LINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG 397

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
               + +    ++     N G+     E+  +++   I P            P  + +++
Sbjct: 398 VPPSEAVYRCLIQGCC--NHGELVKAKELISEMMNKDIPP------------PGVKYFSS 443

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++     EGRV++   ++  M +       P+ VT+ +++      G+M+ A  +L  M 
Sbjct: 444 IINNLFKEGRVAEGKDIMDLMVQ---TGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 500

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
            IG+  N   Y  L+ GYC+  +ID A  + R+M     ++P  V YNI++ G      +
Sbjct: 501 SIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG-VKPTSVLYNIILHGLFQARRT 559

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A   F+EM   G   +  +Y  ++     ++    AN + +++     VK DI+ +N+
Sbjct: 560 TAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFA-MNVKFDIITFNI 618

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           ++    ++G  +EAK +   +   G  P V TY  + + +       EA  L+       
Sbjct: 619 VISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLF------I 672

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            V+K G            PD  LL+ +  + ++ A   KA   ++ ++E+ +
Sbjct: 673 SVEKSG----------RAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNL 714



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 135/314 (42%), Gaps = 21/314 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL     P+   Y TL+ G+  EG V     +   M  Q   +  PD VTY +++  L K
Sbjct: 148 LLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQ---SVSPDVVTYNSLIDGLCK 204

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              M ++ +VL +M   G+  N  TYN L+ GY       ++  + +EM+    I P VV
Sbjct: 205 TKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLI-PCVV 263

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           + N  I      +    A   F+ M  +G  P  ISY+TL+  +A        N + + M
Sbjct: 264 NCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLM 323

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +    V  +   +N+L+  Y R G++++A  I E M+  G  P+  T+ ++ + +    +
Sbjct: 324 VSKGIVP-NHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 382

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +AL  +  +             D  +PP     E +   L   C       KA E+++
Sbjct: 383 LDDALHKFNHM------------VDIGVPP----SEAVYRCLIQGCCNHGELVKAKELIS 426

Query: 504 CMEEHGIPPNKTKY 517
            M    IPP   KY
Sbjct: 427 EMMNKDIPPPGVKY 440



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 184/465 (39%), Gaps = 93/465 (20%)

Query: 67  ACANLGKPKKFLQLFDQM------HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           AC++   P   ++LF +M      H     P + TYN++I    R  R  L + V  R+L
Sbjct: 92  ACSD--GPALAVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLL 149

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + ++ +L+  +   G+++ A  +   M E            D+  Y+S  +G 
Sbjct: 150 RTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSP-------DVVTYNSLIDGL 202

Query: 181 DDDDDEV-FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
               + V  E++L   ++             PN++ Y +L+ GY   G   ++VR+   M
Sbjct: 203 CKTKEMVKSERVLEQMVDAG---------IRPNNKTYNSLIYGYSTAGMWKESVRVFKEM 253

Query: 240 -------------------------RRQED-------NASHPDHVTYTTVVSALVKAGSM 267
                                    +  +D           P+ ++Y+T++      G  
Sbjct: 254 SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCF 313

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
                ++  M   G+  N   +NIL+  Y +   +DKA  +  +M +   I PD V++  
Sbjct: 314 ANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMI-PDTVTFAT 372

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD- 386
           +I     I     AL  FN M   G+ P++  Y  L++      +   A ++  EM+   
Sbjct: 373 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKD 432

Query: 387 ---PRVKV-------------------------------DIVAWNMLVEGYCRMGLVEEA 412
              P VK                                ++V +N L+EGYC +G +EEA
Sbjct: 433 IPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 492

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             +++ M   G  PN   YG+L +G     +  +AL +++++  +
Sbjct: 493 FALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK 537



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 18/275 (6%)

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
           A  P   TY  ++    +    + A  V   + R G+  +  +YN L+ G+ ++ ++DKA
Sbjct: 117 ADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKA 176

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            EL  +M + + + PDVV+YN LIDG     +   +     +M   GI P   +Y +L+ 
Sbjct: 177 YELFYKMIEQS-VSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIY 235

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            ++ +   K + +VF EM     +   +V  N  +   CR   ++EAK I + M   G  
Sbjct: 236 GYSTAGMWKESVRVFKEMSSSGLIPC-VVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPK 294

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           PN+ +Y +L +G +                E C      +  +  +   + P+    + L
Sbjct: 295 PNIISYSTLLHGYA---------------AEGCFANMNSL-VNLMVSKGIVPNHRFFNIL 338

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            +   R     KA+ I   M+  G+ P+   +  +
Sbjct: 339 INAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 373


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 181/414 (43%), Gaps = 44/414 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  ++N ++     +G+ ++ ++ + +M + G  PDV++++ +I L +   +       
Sbjct: 260 PDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAY 319

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI------------VQAMREGRRDVCK 163
           L  +  +G+      +  ++  +   G +  A  +            V         +CK
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCK 379

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
             R LD E+  +E                           +  +   P+   +TTL+ GY
Sbjct: 380 QHRLLDAEELLNE---------------------------MKERGVTPDLCTFTTLIHGY 412

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
             +G     +++   +  Q      PD V Y +++  + + G + +A ++  +M    + 
Sbjct: 413 CRDGNFEKALQLFDTLLHQR---LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIF 469

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N +TY+IL+  +C++ Q+++A   L EM     + P++++YN +I G+    +      
Sbjct: 470 PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNL-PNIMTYNSIIKGYCRSGNVKKGQQ 528

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           F  +M    I P  I++ TL+  +        A  VF+ M ++  V+ D V +NM++ G+
Sbjct: 529 FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE-MVQPDAVTYNMIINGF 587

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              G +EEA R+ ++M  +G  P+  TY SL NG   A    EA  L  E+  R
Sbjct: 588 SEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHR 641



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 190/425 (44%), Gaps = 59/425 (13%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + SDS+ +    N ++++     +  K   +  +M +    PDV+T+NV+I    RA   
Sbjct: 149 LSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDV 208

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI---IR 166
              + +++ +   G+   + TF S++         + A+ + +AM     D C +   +R
Sbjct: 209 DAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAM-----DQCSVAPDVR 263

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
             ++        G+ ++  + ++++    + P                 ++ L+  +   
Sbjct: 264 SFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVS-------------FSCLIGLFSTR 310

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G++      L   R  +     PD V YT V+    +AGSM  A +V  EM  +G   + 
Sbjct: 311 GKMDHAAAYL---REMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDV 367

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDA------------------------------ 316
           +TYN LL G C+Q ++  A+ELL EM +                                
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDT 427

Query: 317 ----KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
               ++ PDVV+YN LIDG     D A A   +++M AR I P  ++Y+ L+ +     Q
Sbjct: 428 LLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQ 487

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            + A    DEM+    +  +I+ +N +++GYCR G V++ ++ +++M ++   P++ T+ 
Sbjct: 488 VEEAFGFLDEMVSKGNLP-NIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFN 546

Query: 433 SLANG 437
           +L +G
Sbjct: 547 TLIHG 551



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 166/379 (43%), Gaps = 45/379 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P V ++S ++   +  G           D     +R+     +V    PD   
Sbjct: 288 MQQRGVTPDVVSFSCLIGLFSTRGK---------MDHAAAYLREMKGLGLV----PDGVI 334

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  V+      G   + L++ D+M   G  PDV+TYN ++  LC    ++H L+   E +
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLC----KQHRLLDAEELL 390

Query: 120 LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELD----L 170
            EM   G+T  + TF +L+  Y   G+ E A  +   +  +  R DV      +D     
Sbjct: 391 NEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRK 450

Query: 171 EDYSSENE-GDDDDDDEVFEKLLPNSI--NPSSEPPLLPKTFA-----------PNSRIY 216
            D +  NE  DD    E+F   +  SI  +   E   + + F            PN   Y
Sbjct: 451 GDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTY 510

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            +++KGY   G V    + L  M   +DN   PD +T+ T++   +K  +M  A  V   
Sbjct: 511 NSIIKGYCRSGNVKKGQQFLQKM--MQDNIL-PDLITFNTLIHGYIKEENMHGAFNVFNI 567

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M +  V  + +TYN+++ G+ +Q  +++A  + ++M     IEPD  +Y  LI+G +   
Sbjct: 568 MEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASG-IEPDRYTYMSLINGHVTAG 626

Query: 337 DSAGALTFFNEMRARGIAP 355
           +S  A    +EM  RG AP
Sbjct: 627 NSKEAFQLHDEMMHRGFAP 645



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N  T NI++  YC+ L+ DKA  ++ EM +   + PDVV++N+LID      D   A+  
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEM-EKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
            + M  +G+ P  +++ +++K      +   A +VF  M     V  D+ ++N+L+ G+C
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAM-DQCSVAPDVRSFNILIGGFC 273

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           R+G VEEA +  + M++ G  P+V ++  L    S   K   A    +E+K
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMK 324


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 184/437 (42%), Gaps = 53/437 (12%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YN +L++    GK ++ L L  +M   G  P+ +TYNV+I   ++         
Sbjct: 231 KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKG 290

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++  +L+ G+ +   T+  L+  Y   G L  A ++ + M    +     +   +   Y 
Sbjct: 291 LIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMV--LKGASPTVATYNSFIYG 348

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G   D  +    +L N+        LLP   +     Y TL+ GY   G +     
Sbjct: 349 LCKLGRMSDAMQQLSDMLANN--------LLPDVVS-----YNTLIYGYCRLGNLMKAFL 395

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   +R        P  VTY T++  L + G ++ A+Q+  EM   G+  + +TY IL+ 
Sbjct: 396 LFDELR---SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 295 GYCQQLQIDKAKELLREMADDA----------------------------------KIEP 320
           G C+   +  A+E   EM  +                                      P
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPP 512

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D++ YN+++DG   + +   A     +M + G+ P  ++YT+++ A   + + +   ++F
Sbjct: 513 DLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            EML    +   +V + +L+ G+   G +E A      M+E G  PNV TY SL NG+  
Sbjct: 573 YEML-SKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCK 631

Query: 441 ARKPGEALLLWKEIKER 457
            R+  +A   + E+ E+
Sbjct: 632 VRRMDQAYNFFAEMVEK 648



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 206/450 (45%), Gaps = 34/450 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVES---VKLFDVVVKRVRKFS---------DP 48
           ++RS Y    +  +  + R+      G V S   VK+ D+++    K S         D 
Sbjct: 130 LMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDK 189

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
            I S   PD    N +L    +     K ++++  M EFG KP ++TYN ++    +  +
Sbjct: 190 MIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRE 167
               + +L  +   G      T+  L+      G+ E A+ ++ + ++ G +        
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           L    Y   N+G           +L  +++   E  ++ K  +P    Y + + G    G
Sbjct: 310 L---IYGYFNKG-----------MLAEALSLQEE--MVLKGASPTVATYNSFIYGLCKLG 353

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+SD ++ L  M     N   PD V+Y T++    + G++ +A  +  E+  I +    +
Sbjct: 354 RMSDAMQQLSDMLA---NNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIV 410

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYN LL G C+Q +++ A++L  EM ++  I PD+V+Y IL++G   +   + A  FF+E
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEG-IAPDIVTYTILVNGSCKMGSLSMAQEFFDE 469

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M   G+     +Y T +           A  + +EML       D++ +N++V+G C++G
Sbjct: 470 MLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG-FPPDLIIYNVVVDGLCKLG 528

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +EEA  ++++M  +G  P+  TY S+ + 
Sbjct: 529 NLEEASELLQKMVSDGVIPDYVTYTSIIHA 558



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 166/381 (43%), Gaps = 59/381 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           PD  +YN ++     LG   K   LFD++      P ++TYN ++  LC +   +     
Sbjct: 372 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL 431

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDY 173
            +E I E GI   + T+  LV      G L +A+     M  EG         ELD   Y
Sbjct: 432 KVEMINE-GIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL--------ELDSYAY 482

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           ++   G+         KL   S   S +  +L K F P+  IY  ++ G    G + +  
Sbjct: 483 ATRIVGE--------LKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEAS 534

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L   ++   +   PD+VTYT+++ A ++ G + + R++  EM   G+  + +TY +L+
Sbjct: 535 ELL---QKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLI 591

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+  + ++++A     EM +   I P+V++YN LI+G   +     A  FF EM  +GI
Sbjct: 592 HGHAGKGRLERAFIYFSEMQEKG-ILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P K SYT                                    +L+   C MG  +EA 
Sbjct: 651 FPNKYSYT------------------------------------ILINENCNMGNWQEAL 674

Query: 414 RIIERMKENGFYPNVATYGSL 434
            + ++M + G  P+  T+ +L
Sbjct: 675 SLYKQMLDRGVQPDSCTHSAL 695



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + KA E+ R M +   I+P +V+YN L+D +         L   +EM+ RG AP  ++Y 
Sbjct: 215 MSKAVEVYRTMGEFG-IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 273

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+   +   + + A  +  EML+   +KV    +N L+ GY   G++ EA  + E M  
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTG-LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVL 332

Query: 422 NGFYPNVATYGSLANGI 438
            G  P VATY S   G+
Sbjct: 333 KGASPTVATYNSFIYGL 349



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
           +K  IV +N L++ YC+ G V++   ++  M+  G  PN  TY  L NG+S   K GE
Sbjct: 230 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLS---KKGE 284


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 212/461 (45%), Gaps = 46/461 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++S  LP +  +S ++S +A S         K +D+V+     F + +I      D   
Sbjct: 60  MIQSRPLPSIVEFSKLLSNIAKS---------KNYDLVISL---FHNMEICGIGH-DLYT 106

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N      +    L +  +M +FG +PDV+T + +I    + +R    V ++ ++ 
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKME 166

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
           EM   L +  + +++  +   G +  A  +   M R+G R         D   Y+S   G
Sbjct: 167 EMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRA--------DTVTYNSLVTG 218

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLL----PKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                       L  S   S    L+     +   PN   +T L+  ++ EG+  +  + 
Sbjct: 219 ------------LCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKF 266

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M R+      PD  TY +++  L   G +D A+Q+L  M   G   + +TYN L+ G
Sbjct: 267 YEEMIRR---CIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLING 323

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  ++D+  +L+REM+    +  D V++N +I G+        A   F+ M +R   P
Sbjct: 324 FCKTKRVDEGTKLVREMSQRGLV-VDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSR---P 379

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +Y+ L+     + + + A  +F+ M +   +++DI  +N+++ G C +G VE+A  +
Sbjct: 380 NIRTYSILLYGLCYNWRVEKALVLFESM-QKSEMELDITTYNIVIHGMCMIGNVEDAWDL 438

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              +   G  P+V TY ++ +G    R   +A  L+++++E
Sbjct: 439 FCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQE 479



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 8/233 (3%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R S  V  L  + +       PD VT +++++   +   +  A  ++++M  +    + +
Sbjct: 116 RCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVV 175

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            YN ++ G+C+   ++ A  L   M  D  +  D V+YN L+ G       + A     +
Sbjct: 176 IYNTIIDGFCKTGLVNNALVLFGRMERDG-VRADTVTYNSLVTGLCCSGRRSDAARLMRD 234

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYC 404
           M  R I P  I++T L+ AF    +   A K ++EM+R   DP    D+  +N ++ G C
Sbjct: 235 MVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDP----DVFTYNSMIHGLC 290

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             G V+EAK+I++ M   G +P+V TY +L NG    ++  E   L +E+ +R
Sbjct: 291 MHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQR 343



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 5/249 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           + P+    ++L+ G+    RV   V ++  M   E+     D V Y T++    K G ++
Sbjct: 135 YEPDVVTVSSLINGFCQGNRVFGAVDLVSKM---EEMRCKLDVVIYNTIIDGFCKTGLVN 191

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +   M R GV A+ +TYN L+ G C   +   A  L+R+M     I P+V+++  L
Sbjct: 192 NALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVM-RDIVPNVITFTAL 250

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+ F+       A  F+ EM  R I P   +Y +++    +  Q   A ++ D M+    
Sbjct: 251 INAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGC 310

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              D+V +N L+ G+C+   V+E  +++  M + G   +  T+ ++  G   A +P  A 
Sbjct: 311 FP-DVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQ 369

Query: 449 LLWKEIKER 457
            ++  +  R
Sbjct: 370 EIFSRMGSR 378


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 169/367 (46%), Gaps = 21/367 (5%)

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           P   T+N +    A+A R   +  V + ++E G TL  + +  L++     G+ + A  +
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
           +  MR  R     I     +      N    ++  E+ EK+               +   
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNR--VEEARELIEKM--------------ARYAP 111

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++  Y  +++      R+ D    L  +         PD   Y  V+S L +   ++ A
Sbjct: 112 PDALTYGPIVERLCKTKRIDDA---LATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEA 168

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R +  +M +  +  N +TYN L+ G C+  +I+ A EL +EMA    + P  VSYN LID
Sbjct: 169 RLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV-PTEVSYNTLID 227

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           GF    D   A   F++M      P  ++YTTL+   + S + + A +V D M++   V 
Sbjct: 228 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG-VT 286

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++  ++ L++G+C++  V+EA +++E+M   G  P V TY  L N +  A K  +A  L
Sbjct: 287 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 346

Query: 451 WKEIKER 457
           ++ + +R
Sbjct: 347 FRGMAQR 353



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 191/425 (44%), Gaps = 44/425 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +GY      +  ++S L   G+    E+ KL   +  R+++F    I         A
Sbjct: 36  MVEAGYTLRASGYGILISCLCKVGNFD--EAYKLLHTM--RLKRFKRKAI---------A 82

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++N    L + ++  +L ++M  + A PD LTY  +++   +  R    +  +E + 
Sbjct: 83  YSTIINWLCKLNRVEEARELIEKMARY-APPDALTYGPIVERLCKTKRIDDALATVEEMA 141

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
             GI      +  +++       +E A  + + M + R +        ++  Y++   G 
Sbjct: 142 TRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINP-------NVVTYNTLINGL 194

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 +   E+F+++               K + P    Y TL+ G+  +    D V  
Sbjct: 195 CKAWRIETAYELFKEMAG-------------KGYVPTEVSYNTLIDGFCKK---KDLVAA 238

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
                +   +   P+ VTYTT++  L K+G +  A +VL  M + GV  N  TY+ L+ G
Sbjct: 239 KDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDG 298

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  ++D+A +LL +M     I P VV+YNIL++     D    A   F  M  R   P
Sbjct: 299 FCKVRRVDEAHKLLEQMVTQG-IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHP 357

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T ++Y TL++A     Q   A++++ EM+       D + ++ L  G  R G V EA+ +
Sbjct: 358 TVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG-CPPDAITYDTLAWGLTRAGKVHEAQEL 416

Query: 416 IERMK 420
           +E+MK
Sbjct: 417 MEKMK 421



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 30/292 (10%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P   T+ TV     KAG +++ ++V   M   G       Y IL+   C+    D+A +L
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L  M    + +   ++Y+ +I+    ++    A     +M AR   P  ++Y  +++   
Sbjct: 68  LHTMRLK-RFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYGPIVERLC 125

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            + +   A    +EM     +K D   +N ++ G C+   VEEA+ + E+M +    PNV
Sbjct: 126 KTKRIDDALATVEEMATRG-IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 184

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEV---------------KKEGVNAD----- 468
            TY +L NG+  A +   A  L+KE+  +  V               KK+ V A      
Sbjct: 185 VTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDK 244

Query: 469 ---SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              S+  P +     L+D L+    ++   + A E++  M + G+ PN   Y
Sbjct: 245 MVRSNCVPNVVTYTTLIDGLS----KSGKVQAAAEVLDGMVKKGVTPNVATY 292


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y  ++ G    GR  D V +   M  +   A  P+H+TY T++   +K G ++  
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTER---AVLPNHITYNTMIDGHIKGGDLEAG 69

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M   G+  N ITYN+LL G C+  ++ +   LL EMA   K+ PD  +Y+IL D
Sbjct: 70  FRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQ-KMVPDGFTYSILFD 128

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     DS   L+ F +    G+     + + L+       +  +A +V   ++    V 
Sbjct: 129 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 188

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             ++ +N L+ GYC+ G +E A     +MK     P+  TY +L NG+  A +   A  L
Sbjct: 189 TRVI-YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 247

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             E+++       GVN          P  E  + L D   R     K   +++ M+E+G+
Sbjct: 248 LMEMQD------NGVN----------PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 291

Query: 511 PPNKTKYKKI 520
            PN   Y  I
Sbjct: 292 KPNVVSYGSI 301



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 189/423 (44%), Gaps = 20/423 (4%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           +  D  +    KP+   YN +L+     G+  +   L D+M      PD  TY+++    
Sbjct: 71  RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 130

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
           +R      ++ +  + L+ G+T+   T   L+      G + IAE ++Q++        +
Sbjct: 131 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 190

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           +I    +  Y    E          E         S+   +  +   P+   Y  L+ G 
Sbjct: 191 VIYNTLINGYCQTGE---------LEGAF------STFGQMKSRHIKPDHITYNALINGL 235

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
               R+++   +L  M   +DN  +P   T+ T++ A  + G +++   VL+EM   G+ 
Sbjct: 236 CKAERITNAQDLLMEM---QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 292

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N ++Y  ++  +C+  +I +A  +L +M     + P+   YN +ID ++    +  A  
Sbjct: 293 PNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK-DVLPNAQVYNAIIDAYVEHGPNDQAFI 351

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
              +M++ GI+P+ ++Y  L+K     SQ   A ++ +  L + R+  D V++N L+   
Sbjct: 352 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINS-LSNHRLIPDAVSYNTLISAC 410

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
           C  G +++A  + +RM + G    V TY  L +G+  A +  E   L++++ +   V   
Sbjct: 411 CYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSN 470

Query: 464 GVN 466
            ++
Sbjct: 471 AIH 473



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 178/428 (41%), Gaps = 71/428 (16%)

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           P+  +YNV+I    RA R    V V + + E  +     T+ +++  ++  GDLE    +
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
              M      VC  ++                                            
Sbjct: 73  RDQM------VCHGLK-------------------------------------------- 82

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y  L+ G    GR+ +T  +L  M  Q+     PD  TY+ +   L + G     
Sbjct: 83  PNAITYNVLLSGLCRAGRMGETSALLDEMASQK---MVPDGFTYSILFDGLSRNGDSKAM 139

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +  +  + GV     T +ILL G C+  ++  A+E+L+ + + A + P  V YN LI+
Sbjct: 140 LSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVN-AGLVPTRVIYNTLIN 198

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+    +  GA + F +M++R I P  I+Y  L+     + +   A  +  EM +D  V 
Sbjct: 199 GYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM-QDNGVN 257

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             +  +N L++ Y R G +E+   ++  M+ENG  PNV +YGS+ N      K  EA+ +
Sbjct: 258 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAI 317

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             ++  +                 + P+ ++ +A+ D  V      +A  +V  M+ +GI
Sbjct: 318 LDDMFHK----------------DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 361

Query: 511 PPNKTKYK 518
            P+   Y 
Sbjct: 362 SPSIVTYN 369



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 200/471 (42%), Gaps = 48/471 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +YN V+      G+    +++FD+M E    P+ +TYN MI    +         +
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            ++++  G+     T+  L++     G +     ++  M   ++ V        L D  S
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGLS 131

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT--LMKGYMNEGRVSDTV 233
            N GD      +F K L N +                   YT   L+ G   +G+VS   
Sbjct: 132 RN-GDSKAMLSLFGKYLKNGVTIGD---------------YTCSILLNGLCKDGKVSIAE 175

Query: 234 RMLGAMRRQEDNASH-PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +L ++     NA   P  V Y T+++   + G ++ A     +M    +  + ITYN L
Sbjct: 176 EVLQSLV----NAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 231

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C+  +I  A++LL EM D+  + P V ++N LID +             +EM+  G
Sbjct: 232 INGLCKAERITNAQDLLMEMQDNG-VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENG 290

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLV 409
           + P  +SY +++ AF  + +   A  + D+M      P  +V    +N +++ Y   G  
Sbjct: 291 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQV----YNAIIDAYVEHGPN 346

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           ++A  ++E+MK NG  P++ TY  L  G+    +  EA              +E +N+ S
Sbjct: 347 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEA--------------EEIINSLS 392

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +    L PD    + L   C       KAL++   M ++GI      Y ++
Sbjct: 393 N--HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 441



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 145/352 (41%), Gaps = 55/352 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN ++N     G+ +     F QM     KPD +TYN +I    +A R      +
Sbjct: 188 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 247

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + + G+   + TF +L+ AY   G LE    ++  M+E                   
Sbjct: 248 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE------------------- 288

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              PN   Y +++  +   G++ + V +
Sbjct: 289 -------------------------------NGLKPNVVSYGSIVNAFCKNGKIPEAVAI 317

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++     P+   Y  ++ A V+ G  D+A  ++ +M   G+  + +TYN+L+KG
Sbjct: 318 LDDMFHKD---VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 374

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C Q QI +A+E++  +++  ++ PD VSYN LI       +   AL     M   GI  
Sbjct: 375 LCNQSQISEAEEIINSLSNH-RLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS 433

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           T  +Y  L+     + +      ++ +M+++  V  + +  N++VE Y + G
Sbjct: 434 TVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAI-HNIMVEAYSKYG 484



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +LR M  D    P+  SYN++I G         A+  F+EM  R + P  I+Y T++   
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 60

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                 +   ++ D+M+    +K + + +N+L+ G CR G + E   +++ M      P+
Sbjct: 61  IKGGDLEAGFRLRDQMVCHG-LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPD 119

Query: 428 VATYGSLANGIS 439
             TY  L +G+S
Sbjct: 120 GFTYSILFDGLS 131



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YN +++AC   G   K L L  +MH++G K  V TY+ +I     A R + + ++
Sbjct: 398 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 457

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            +++++  +         +V AY  +G+   AE + + M + R +
Sbjct: 458 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 502


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 168/383 (43%), Gaps = 29/383 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   +  ++    + G+  + L+ F  M +  A PDV+TY  ++    +A +      +L
Sbjct: 43  NAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCA-PDVMTYTALVHALCKAGKFDEAQGML 101

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             ++  G      TF +L+     FG  E      QA R              LED    
Sbjct: 102 REMIARGCAPDTVTFSTLIDGLCKFGSEE------QAFRV-------------LEDVIQR 142

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPP-----LLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             G+ D   E   + L N  N           ++ K F P   ++  ++ G+     +  
Sbjct: 143 GMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDS 202

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             ++L  M    +    P+  T+T +++ L KA  +  A+Q+L +M   G   N +TY+ 
Sbjct: 203 AYKLLEVMI---EKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYST 259

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++ G C+Q Q+D A EL + M +     P+VV++NILIDG         A   ++ MR  
Sbjct: 260 VINGLCKQGQVDDAYELFQLM-ERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRET 318

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G AP  I+Y +L+     S Q   A ++F  +        + V ++ L  GY  +G + +
Sbjct: 319 GCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMAD 378

Query: 412 AKRIIERMKENGFYPNVATYGSL 434
           A RI   + + GF P++ATY SL
Sbjct: 379 ACRIFSMLVDKGFSPDLATYTSL 401



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 22/346 (6%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  N+ ++TTLMKG  + GRV + +    AM +       PD +TYT +V AL KAG  D
Sbjct: 40  FEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD----CAPDVMTYTALVHALCKAGKFD 95

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A+ +L EM   G   + +T++ L+ G C+    ++A  +L ++        D     I+
Sbjct: 96  EAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETII 155

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
                  +    A      + A+G  PT + +  ++  F  +     A K+ + M+    
Sbjct: 156 QRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGC 215

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V  ++  + +L+ G C+   V EA++++E+M   G  PNV TY ++ NG+    +  +A 
Sbjct: 216 VP-NVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAY 274

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L++ ++ R            + PP +     L+D L     +A    +A ++   M E 
Sbjct: 275 ELFQLMERR------------NCPPNVVTHNILIDGLC----KAKRIEEARQLYHRMRET 318

Query: 509 GIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKF 554
           G  P+   Y  + ++   + F    A Q  Q        AA A  +
Sbjct: 319 GCAPDIITYNSL-IDGLCKSFQVDEAFQLFQTIPESGVSAANAVTY 363



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/498 (21%), Positives = 205/498 (41%), Gaps = 50/498 (10%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASR 108
           +  D  PD   Y A+++A    GK  +   +  +M   G  PD +T++ +I  LC   S 
Sbjct: 70  MAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSE 129

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVG-FGDLEIAETIVQAMREGRRDVCKIIRE 167
           +     VLE +++ G+      F++++      +  +E+A  ++  +         ++  
Sbjct: 130 EQAFR-VLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFN 188

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPS------------------SEPPLLPKTF 209
           L +  +      D D   ++ E ++     P+                      LL K  
Sbjct: 189 LVINGFCKAK--DLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 210 ----APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
               +PN   Y+T++ G   +G+V D   +   M R+      P+ VT+  ++  L KA 
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRN---CPPNVVTHNILIDGLCKAK 303

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            ++ ARQ+   M   G   + ITYN L+ G C+  Q+D+A +L + + +      + V+Y
Sbjct: 304 RIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTY 363

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           + L  G+  +   A A   F+ +  +G +P   +YT+L+  +  +S+     ++ +EM  
Sbjct: 364 STLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMAS 423

Query: 386 D---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
               PRV         L EG       E A ++ + M   G   +   Y  +  G++ A 
Sbjct: 424 KGFPPRVNTLSAVLGGLFEG----NHTERAIQLFDSMAARGCTDDALIYNLVVEGMARAS 479

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
           K  +AL + +++ ++ + K               P    +DAL +   +      A +++
Sbjct: 480 KHNKALAVLEQVIDKRDRK-------------FNPSSSAVDALVESLCQVGRTDDAKQLL 526

Query: 503 ACMEEHGIPPNKTKYKKI 520
             M E G     + Y  +
Sbjct: 527 HKMSERGFAAAVSSYNGL 544



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 107/476 (22%), Positives = 202/476 (42%), Gaps = 42/476 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P+V  ++ +++ L  +   G  E+ +L +   K V     P++V+        
Sbjct: 210 MIEKGCVPNVFTFTILITGLCKANRVG--EAQQLLE---KMVTGGCSPNVVT-------- 256

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ V+N     G+     +LF  M      P+V+T+N++I    +A R      +  R+ 
Sbjct: 257 YSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMR 316

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEG 179
           E G    + T+ SL+        ++ A  + Q + E G      +        Y++   G
Sbjct: 317 ETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA--LG 374

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              D   +F               L+ K F+P+   YT+L+  Y    R  + V ++  M
Sbjct: 375 RMADACRIFSM-------------LVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEM 421

Query: 240 RRQEDNASHPDHV-TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
             +      P  V T + V+  L +    +RA Q+   M   G   + + YN++++G  +
Sbjct: 422 ASK----GFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 477

Query: 299 QLQIDKAKELLREMAD--DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
             + +KA  +L ++ D  D K  P   + + L++    +  +  A    ++M  RG A  
Sbjct: 478 ASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAA 537

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLR-DPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             SY  L+   +   +   A +VF+ M+   P  ++  V  N+++   C    V++A  +
Sbjct: 538 VSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTV--NVVISWLCSAAKVDDAYEL 595

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           ++RM + G  P++ T  +L  G     K G A L  K ++E  E   E  +   DL
Sbjct: 596 VQRMSKLGCCPDIETCNTLIGGYC---KSGRADLARKLLEEMTEAGLEPNDTTHDL 648



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 116/273 (42%), Gaps = 51/273 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P     +AVL         ++ +QLFD M   G   D L YN++++  ARAS+ +  + V
Sbjct: 428 PRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAV 487

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE++++                         + + V A+ E    +C++           
Sbjct: 488 LEQVIDKRDR-----------------KFNPSSSAVDALVE---SLCQV----------- 516

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  DD  ++  K+        SE     + FA     Y  L+ G     R  +  ++
Sbjct: 517 ---GRTDDAKQLLHKM--------SE-----RGFAAAVSSYNGLLSGLSRLQRWDEATQV 560

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
             AM         P+  T   V+S L  A  +D A +++  M+++G   +  T N L+ G
Sbjct: 561 FEAMVSA---GPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGG 617

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           YC+  + D A++LL EM  +A +EP+  ++++L
Sbjct: 618 YCKSGRADLARKLLEEMT-EAGLEPNDTTHDLL 649


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 147/307 (47%), Gaps = 18/307 (5%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+   +  GR  D V +  +    +D    PD  ++  V+  + + G+  +A +++ 
Sbjct: 182 YNYLLNSLIAHGRAQDAVALFESW--IQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVE 239

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            MT  G   + IT+NIL+ G C+  Q++K  E+LR +  D    P+ V+Y  +I G+   
Sbjct: 240 RMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKA 299

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                A++ +N+M   G  P  ++Y  L+  +  +   + A +++ +++       D+V 
Sbjct: 300 GKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR-HCPPDVVT 358

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++GYCR G +++AKRI + M  +   PNV T+  + + +    +  EAL + +E+ 
Sbjct: 359 FSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELN 418

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            R ++                P   + + + DI  +     +A  IV  M+E G  P+K 
Sbjct: 419 MRTDI---------------APQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKY 463

Query: 516 KYKKIYV 522
            Y  + +
Sbjct: 464 TYTILII 470



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 147/314 (46%), Gaps = 27/314 (8%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           +P++  +  L+ G     +V+    +L   R Q D    P+ VTYT+V+S   KAG M+ 
Sbjct: 247 SPDTITHNILVDGLCRAKQVNKGHEVL--RRLQRDGVCMPNAVTYTSVISGYCKAGKMED 304

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  V  +M   G   N +TYN+L+ GY + L ++ A  + R++       PDVV+++ LI
Sbjct: 305 AMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR-HCPPDVVTFSSLI 363

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DG+        A   + EM    I P   +++ ++   +L  Q + A  +  ++LR+  +
Sbjct: 364 DGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIH--SLCKQNRSAEAL--DILRELNM 419

Query: 390 KVDIVA----WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           + DI      +N +++  C+ G V+EA  I+  MKE G +P+  TY  L  G  +  +  
Sbjct: 420 RTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIP 479

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
           EA+ L+ ++ E                   +PD   +++     ++A    +  +I+   
Sbjct: 480 EAITLFHKMVE----------------AGCRPDNITVNSFVSCVLKAGMPNEVDQIMLIA 523

Query: 506 EEHGIPPNKTKYKK 519
             HG+   K   ++
Sbjct: 524 SGHGLASQKVSSQQ 537



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 154/374 (41%), Gaps = 61/374 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            PD  ++N V+     +G  +K L+L ++M EFG  PD +T+N+++    RA + +    
Sbjct: 212 SPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHE 271

Query: 115 VLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDL 170
           VL R+   G+  CM    T+ S+++ Y   G +E A ++   M E G R           
Sbjct: 272 VLRRLQRDGV--CMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTR----------- 318

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                                   PN+  Y  L+ GY     + 
Sbjct: 319 ----------------------------------------PNTVTYNVLINGYGKALDME 338

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             VRM    R+       PD VT+++++    + G +D A+++  EM    +  N  T++
Sbjct: 339 SAVRM---YRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFS 395

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           I++   C+Q +  +A ++LRE+     I P    YN +ID          A     +M+ 
Sbjct: 396 IIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKE 455

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P K +YT L+    +  +   A  +F +M+ +   + D +  N  V    + G+  
Sbjct: 456 KGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMV-EAGCRPDNITVNSFVSCVLKAGMPN 514

Query: 411 EAKRIIERMKENGF 424
           E  +I+     +G 
Sbjct: 515 EVDQIMLIASGHGL 528



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 123/315 (39%), Gaps = 18/315 (5%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P +  P+ + Y  ++      GR  D +++   M  Q      P+   ++ V  +   AG
Sbjct: 101 PLSVPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYL--PEAGFFSFVAGSCTNAG 158

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D A  +L + +R+G       YN LL       +   A  L      D    PDV S+
Sbjct: 159 LLDAASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSF 218

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N++I G   + +   AL     M   G +P  I++  L+     + Q    ++V   + R
Sbjct: 219 NVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQR 278

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           D     + V +  ++ GYC+ G +E+A  +   M E+G  PN  TY  L NG   A    
Sbjct: 279 DGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDME 338

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
            A+ +++++  R                   PD     +L D   R      A  I   M
Sbjct: 339 SAVRMYRQLILR----------------HCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEM 382

Query: 506 EEHGIPPNKTKYKKI 520
             H I PN   +  I
Sbjct: 383 GLHHIQPNVYTFSII 397



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 123/308 (39%), Gaps = 61/308 (19%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y +V++     GK +  + +++ M E G +P+ +TYNV+I    +A      V +
Sbjct: 284 PNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRM 343

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             +++       + TF SL+  Y   G L+ A+              +I +E+ L     
Sbjct: 344 YRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAK--------------RIWKEMGLHH--- 386

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                              PN   ++ ++     + R ++ + +
Sbjct: 387 ---------------------------------IQPNVYTFSIIIHSLCKQNRSAEALDI 413

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +  + D A  P    Y  V+  L K G +D A  ++ +M   G   ++ TY IL+ G
Sbjct: 414 LRELNMRTDIA--PQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIG 471

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM----RAR 351
           +C + +I +A  L  +M  +A   PD    NI ++ F+     AG     +++       
Sbjct: 472 HCMKGRIPEAITLFHKMV-EAGCRPD----NITVNSFVSCVLKAGMPNEVDQIMLIASGH 526

Query: 352 GIAPTKIS 359
           G+A  K+S
Sbjct: 527 GLASQKVS 534


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 193/409 (47%), Gaps = 28/409 (6%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           S PD   Y+ +L+     GK ++  +L  ++   G +PD L Y  ++    +++R    +
Sbjct: 78  STPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEAL 137

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLE 171
            +LE ++  G    + TF +L++      +LE+A++++Q M     + DV      +D  
Sbjct: 138 ELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMD-- 195

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                  G   + +++ E++  +               AP+   Y++ + G    G+V D
Sbjct: 196 --GLCKAGRLQEAEQLLERMKASGC-------------APDVVAYSSFVYGLCKSGKVLD 240

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYN 290
             ++L  MR   D+   P+ VTY T++  L K+G +D A +++ +M +  G   N + Y+
Sbjct: 241 AHQVLEQMR---DSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYS 297

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            ++ G C+  +  +A+ ++  MA  A   PDVV+Y+ L++G         A+    EM  
Sbjct: 298 TVVDGLCKLGRTQEARSVMEAMA-RAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAM 356

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV----DIVAWNMLVEGYCRM 406
            G  P  ++Y +L+       +   A ++ +EM             +  +N L+ G C+ 
Sbjct: 357 EGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKA 416

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           G +++A +  +RM+  G  P+  +Y ++  G++ + +  +A ++  E++
Sbjct: 417 GRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 193/429 (44%), Gaps = 31/429 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P++  +NA++N  +  G+P    +L + M     +P+V++YN +++   +  R H    +
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 116 LERILEMG--ITLCMTTFQSLVAAYVGFGDLE-----IAETIVQAMREGRRDVCKIIREL 168
           +  ++  G   T  M T+ +L++ Y   G +E     + E I + +R       K++  L
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127

Query: 169 DLEDYSSENEGDDDDDDE--------VFEKLLPNSI---NPSSEPPLLPKTFAPNSR--- 214
                  E     ++            F  L+       N      LL K  A   +   
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADV 187

Query: 215 -IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y TLM G    GR+ +  ++L    R + +   PD V Y++ V  L K+G +  A QV
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLL---ERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQV 244

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L +M       N +TYN +L G C+  +ID A E++ +MA       +VV Y+ ++DG  
Sbjct: 245 LEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLC 304

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            +  +  A +    M   G  P  ++Y++L+     + + + A +   EM  +   K + 
Sbjct: 305 KLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG-CKPNA 363

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFY-----PNVATYGSLANGISLARKPGEAL 448
           V +  LV G C  G + EA+R++E M   G       P+V+TY +L  G+  A +  +AL
Sbjct: 364 VTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDAL 423

Query: 449 LLWKEIKER 457
             ++ ++ +
Sbjct: 424 KFFQRMRSQ 432


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 129/514 (25%), Positives = 220/514 (42%), Gaps = 55/514 (10%)

Query: 18  SRLAASGDDGPVESVKLFDVVVK-RVRKFS------DPDIVSDSKPDTAAYNAVLNACAN 70
           SR AAS    P   VKL  ++++ + R +       D   +S    DT +YN  + AC+N
Sbjct: 63  SRGAASRGGKPKSLVKLKSILLEAKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSN 122

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL--EMGITLCM 128
             +    ++L  +M   G  PDV+TYN  I  C++  R    + +L +++    GIT  +
Sbjct: 123 GRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDV 182

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD--DE 186
            T+ S +AA    G  + A  +++ M         I     +   +     ++  D  +E
Sbjct: 183 VTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEE 242

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           V E+  P                 P++R Y  ++      GR  + + +LG M   +  A
Sbjct: 243 VIEQGFP-----------------PSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPA 285

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
              D ++Y++V++A  +      A  +L +M   GV  N I+YN  +    +  +  +A 
Sbjct: 286 ---DVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEAL 342

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           +LLREM     + P V+SYN       +      AL    EM A+GIAP  ISY + + A
Sbjct: 343 DLLREMT-TVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDA 401

Query: 367 FALSSQPKLANKVFDEML---RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
            A   Q + A K+   M     DP    DI+++N  ++   R    E A  ++  M   G
Sbjct: 402 CAKGGQWEKAVKLLRGMSTVGSDP----DIISFNSAIDACGRGQQWETAVELLREMPTAG 457

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PNV TY S       + +  EA+ L++E+  R                 L P+    +
Sbjct: 458 LTPNVITYNSAIEACGRSARWQEAMGLFREMPTR----------------GLSPNVVTYN 501

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           ++ D C +   +  A++++  M   G+ P+   Y
Sbjct: 502 SMIDACAKGEQWELAVQLLTGMPARGVAPDVISY 535



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/516 (23%), Positives = 220/516 (42%), Gaps = 56/516 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN+ + AC+N G+ K+ + L +QM   G  P+++TYN  I  CA+  R    + +
Sbjct: 180 PDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDL 239

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFG-------------------DLEIAETIVQAMRE 156
           LE ++E G      T+  ++ A    G                   D+    +++ A   
Sbjct: 240 LEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGR 299

Query: 157 GRR--DVCKIIRELDLEDYS----SENEGDDD--DDDEVFEKLLPNSINPSSEPPLLPKT 208
           GRR  +   ++ ++  +  S    S N   D     D   E L  + +   +   L+P  
Sbjct: 300 GRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEAL--DLLREMTTVGLVPTV 357

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            + NS      + G     R  + + +L  M  Q      P+ ++Y + + A  K G  +
Sbjct: 358 ISYNSATAACAVNG-----RWVEALELLKEMPAQ---GIAPNTISYNSALDACAKGGQWE 409

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A ++L  M+ +G   + I++N  +    +  Q + A ELLREM   A + P+V++YN  
Sbjct: 410 KAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREM-PTAGLTPNVITYNSA 468

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+          A+  F EM  RG++P  ++Y +++ A A   Q +LA ++   M     
Sbjct: 469 IEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARG- 527

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V  D++++N  +E   +    E A ++++ M   G  P++ +Y S     + + +  EAL
Sbjct: 528 VAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREAL 587

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L K++                    L P+     A    C +   +  A+ I+  M+ H
Sbjct: 588 GLLKDMAT----------------VGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTH 631

Query: 509 GIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRE 544
           G  PN   Y    ++  ++    K A     D RR+
Sbjct: 632 GATPNLITYSAA-IDACAKQGRWKEAVDLLTDLRRQ 666



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/469 (22%), Positives = 195/469 (41%), Gaps = 73/469 (15%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +D   D  +Y++V+ AC    + K+ + L +QM   G  P+V++YN  I  CA+  R 
Sbjct: 279 LTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRW 338

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
              + +L  +  +G+   + ++ S  AA    G        V+A+        ++++E+ 
Sbjct: 339 KEALDLLREMTTVGLVPTVISYNSATAACAVNGRW------VEAL--------ELLKEMP 384

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
            +                                      APN+  Y + +      G+ 
Sbjct: 385 AQG------------------------------------IAPNTISYNSALDACAKGGQW 408

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
              V++L   R      S PD +++ + + A  +    + A ++L EM   G+  N ITY
Sbjct: 409 EKAVKLL---RGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITY 465

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N  ++   +  +  +A  L REM     + P+VV+YN +ID     +    A+     M 
Sbjct: 466 NSAIEACGRSARWQEAMGLFREMPTRG-LSPNVVTYNSMIDACAKGEQWELAVQLLTGMP 524

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGL 408
           ARG+AP  ISY + ++A     Q +LA ++   M  R P  K DI+++N  V    + G 
Sbjct: 525 ARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGP--KPDIISYNSAVTACAKSGR 582

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
             EA  +++ M   G  PN  +YG+  +      +   A+ + KE++             
Sbjct: 583 WREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGAT-------- 634

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                   P+     A  D C +   +++A++++  +   G+ P+   Y
Sbjct: 635 --------PNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTY 675



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 136/337 (40%), Gaps = 66/337 (19%)

Query: 35  FDVVVKRVRKFS----DPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90
           ++  VK +R  S    DPDI+S        +N+ ++AC    + +  ++L  +M   G  
Sbjct: 408 WEKAVKLLRGMSTVGSDPDIIS--------FNSAIDACGRGQQWETAVELLREMPTAGLT 459

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           P+V+TYN  I+ C R++R    + +   +   G++  + T+ S++ A       E+A  +
Sbjct: 460 PNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQL 519

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
           +  M    R V       D+  Y+S  E       E +E  L                  
Sbjct: 520 LTGMPA--RGVAP-----DVISYNSAIEA--CGKGEQWELAL------------------ 552

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
                   L+KG    G   D +                   +Y + V+A  K+G    A
Sbjct: 553 -------QLLKGMPTRGPKPDII-------------------SYNSAVTACAKSGRWREA 586

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L +M  +G+  N ++Y   +    +  Q D A  +L+EM       P++++Y+  ID
Sbjct: 587 LGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGAT-PNLITYSAAID 645

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
                     A+    ++R +G+ P   +Y T++ AF
Sbjct: 646 ACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAF 682



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 69/201 (34%), Gaps = 52/201 (25%)

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D  SYNI I         A A+    EM   G+ P  ++Y + + A +   + K A  + 
Sbjct: 109 DTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLL 168

Query: 381 DEMLRDPR-VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            +M+     +  D+V +N  +      G  +EA  ++E+M   G  PN+ TY S     +
Sbjct: 169 TQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACA 228

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
             R+       W                           EE +D L ++           
Sbjct: 229 KGRR-------W---------------------------EEAMDLLEEVI---------- 244

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
                  E G PP+   Y  +
Sbjct: 245 -------EQGFPPSTRTYNPV 258


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 193/401 (48%), Gaps = 22/401 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  +   ++N     G+P++   +F+ + E G KP ++TY  ++    R    H L+ ++
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLI 377

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSS 175
            ++ + G+      F +++ A    G+L+ A  I + M+E G +        L ++ Y  
Sbjct: 378 SKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTL-IKGYG- 435

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  ++   + E +L + +              PN R    L++ + N+ ++ +   +
Sbjct: 436 -KIGKLEESSRLLEMMLRDEM------------LQPNDRTCNILVQAWCNQRKIEEAWNI 482

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR-QVLAEMTRIGVPANRITYNILLK 294
           +  M   +     PD VT+ T+  A  + GS   A   ++  M    V  N  T   ++ 
Sbjct: 483 VYKM---QSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVN 539

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++ ++++A      M  +  + P++  +N LI GF+ I+D  G     + M   G+ 
Sbjct: 540 GYCEEGKMEEALRFFYRM-KELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVK 598

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++++TLM A++     K   +++ +ML +  +  DI A+++L +GY R G  E+A++
Sbjct: 599 PDVVTFSTLMNAWSSVGDMKRCEEIYRDML-EGGIDPDIHAFSILAKGYARAGEPEKAEQ 657

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           I+ +M++ G  PNV  Y  + +G   A +  +A+ ++ +++
Sbjct: 658 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMR 698



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 179/411 (43%), Gaps = 46/411 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+V+ L            K F  ++  + K     +    +PDT  
Sbjct: 345 LIEEGHKPSIITYTTLVTALTRQ---------KHFHSLLSLISKVQKNGL----RPDTIL 391

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE--- 117
           +NA++NA +  G   + +++F++M E G KP   T+N +IK   +  +       LE   
Sbjct: 392 FNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGK-------LEESS 444

Query: 118 RILEMGITLCMT-----TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           R+LEM +   M      T   LV A+     +E A  IV  M+        +        
Sbjct: 445 RLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARA 504

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           YS        +D  +              P +L     PN R   T++ GY  EG++ + 
Sbjct: 505 YSRIGSTCTAEDMII--------------PRMLHNKVKPNVRTCGTIVNGYCEEGKMEEA 550

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +R      R ++   HP+   + +++   +    MD   +V+  M   GV  + +T++ L
Sbjct: 551 LRFF---YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTL 607

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  +     + + +E+ R+M +   I+PD+ +++IL  G+    +   A    N+MR  G
Sbjct: 608 MNAWSSVGDMKRCEEIYRDMLEGG-IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           + P  + YT ++  +  + + K A +V+++M     +  ++  +  L+ G+
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGF 717



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 24/337 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ +   P+   YTTL+     +        +L  + + + N   PD + +  +++A  +
Sbjct: 345 LIEEGHKPSIITYTTLVTALTRQKHFHS---LLSLISKVQKNGLRPDTILFNAIINASSE 401

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           +G++D+A ++  +M   G      T+N L+KGY +  +++++  LL  M  D  ++P+  
Sbjct: 402 SGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDR 461

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDE 382
           + NIL+  +        A     +M++ G+ P  +++ TL +A++ + S     + +   
Sbjct: 462 TCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPR 521

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG---IS 439
           ML + +VK ++     +V GYC  G +EEA R   RMKE G +PN+  + SL  G   I+
Sbjct: 522 MLHN-KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580

Query: 440 LARKPGEALLLWKEIKERCEVKKEG--VNADSD--------------LPPPLKPDEELLD 483
                GE + L +E   + +V      +NA S               L   + PD     
Sbjct: 581 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFS 640

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            LA    RA    KA +I+  M + G+ PN   Y +I
Sbjct: 641 ILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQI 677


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 193/434 (44%), Gaps = 48/434 (11%)

Query: 12  AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
            +ST++  L  SG+ DG             RV K    + VS   PD   YN +LN    
Sbjct: 292 TYSTLIHGLCGSGNLDGAT-----------RVYKEMAENGVS---PDVVVYNTMLNGYLR 337

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
            G+ ++ L+L+  M + G +  V++YN++I+     ++    + + E + E        T
Sbjct: 338 AGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMT 396

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDDD 185
           +  LV      G L  A +I++    GR D       LD   YSS       EG  D+  
Sbjct: 397 YGVLVHGLCKNGYLNKALSILEEAENGRGD-------LDTFAYSSMINGLCREGRLDEVA 449

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            V +++  +   P             N  +   ++ G++   ++ D +R  G M  +   
Sbjct: 450 GVLDQMTKHGCKP-------------NPHVCNAVINGFVRASKLEDALRFFGNMVSK--- 493

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P  VTY T+++ L KA     A  ++ EM   G   N ITY++L+ G CQ  ++D A
Sbjct: 494 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMA 553

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             L  + A +   +PDV  +NI+I G         AL  ++EM+ R   P  +++ TLM+
Sbjct: 554 LNLWCQ-ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLME 612

Query: 366 AFALSSQPKLANKVFDEMLR-DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            F      + A+K++D +L+  P  + DI+++N+ ++G C    + +A   +    + G 
Sbjct: 613 GFYKVRDFERASKIWDHILQYGP--QPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGV 670

Query: 425 YPNVATYGSLANGI 438
            P   T+  L   +
Sbjct: 671 LPTAITWNILVRAV 684



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/474 (21%), Positives = 205/474 (43%), Gaps = 54/474 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  ++N+ A  G     L+LFD+M E G  PDV  YN++I    +         +
Sbjct: 182 PDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEI 241

Query: 116 LERILEM-GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            ER+L+   +   + ++  ++      G  + +  I   M++  R         DL  YS
Sbjct: 242 WERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ-------DLYTYS 294

Query: 175 SE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +        G+ D    V++++  N +             +P+  +Y T++ GY+  GR+
Sbjct: 295 TLIHGLCGSGNLDGATRVYKEMAENGV-------------SPDVVVYNTMLNGYLRAGRI 341

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            + + +   M ++         V+Y  ++  L +   +D A  +   +      A+ +TY
Sbjct: 342 EECLELWKVMEKEGCRTV----VSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTY 397

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL---IDDSAGALTFFN 346
            +L+ G C+   ++KA  +L E A++ + + D  +Y+ +I+G      +D+ AG L   +
Sbjct: 398 GVLVHGLCKNGYLNKALSILEE-AENGRGDLDTFAYSSMINGLCREGRLDEVAGVL---D 453

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +M   G  P       ++  F  +S+ + A + F  M+        +V +N L+ G  + 
Sbjct: 454 QMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPT-VVTYNTLINGLSKA 512

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
               EA  +++ M   G+ PN+ TY  L NG+   +K   AL LW      C+  ++G  
Sbjct: 513 ERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW------CQALEKG-- 564

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    KPD ++ + +      +     AL++ + M++    PN   +  +
Sbjct: 565 --------FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTL 610



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 17/270 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R  E     P   +Y ++++AL+++   D A         +G+  N  TYNIL+K  C++
Sbjct: 103 RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q DKAKELL  M +     PDV SY  LI+        + AL  F+EM  RG+ P    
Sbjct: 163 KQFDKAKELLNWMWEQG-FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+  F        A+++++ +L+ P V  +I ++N+++ G C+ G  +E+  I  RM
Sbjct: 222 YNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           K+N    ++ TY +L +G+  +     A  ++KE+ E       GV+          PD 
Sbjct: 282 KKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAE------NGVS----------PDV 325

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHG 509
            + + + +  +RA    + LE+   ME+ G
Sbjct: 326 VVYNTMLNGYLRAGRIEECLELWKVMEKEG 355



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 206/483 (42%), Gaps = 56/483 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRK-------------FSD 47
           M   G+ P V ++ T+++ LA +G     +++KLFD + +R                F  
Sbjct: 175 MWEQGFSPDVFSYGTLINSLAKNGYMS--DALKLFDEMPERGVTPDVACYNILIDGFFKK 232

Query: 48  PDIVSDSK------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
            DI++ S+            P+  +YN ++N     GK  +  +++ +M +     D+ T
Sbjct: 233 GDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYT 292

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM- 154
           Y+ +I     +        V + + E G++  +  + +++  Y+  G +E    + + M 
Sbjct: 293 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVME 352

Query: 155 REGRRDVCK---IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           +EG R V     +IR L       EN    D+   ++E LLP             K    
Sbjct: 353 KEGCRTVVSYNILIRGL------FEN-AKVDEAISIWE-LLPE------------KDCCA 392

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +S  Y  L+ G    G ++   + L  +   E+     D   Y+++++ L + G +D   
Sbjct: 393 DSMTYGVLVHGLCKNGYLN---KALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVA 449

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            VL +MT+ G   N    N ++ G+ +  +++ A      M       P VV+YN LI+G
Sbjct: 450 GVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCF-PTVVTYNTLING 508

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
               +  + A     EM  +G  P  I+Y+ LM       +  +A  ++ + L +   K 
Sbjct: 509 LSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL-EKGFKP 567

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D+   N+++ G C  G VE+A ++   MK+    PN+ T+ +L  G    R    A  +W
Sbjct: 568 DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIW 627

Query: 452 KEI 454
             I
Sbjct: 628 DHI 630



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/466 (23%), Positives = 195/466 (41%), Gaps = 65/466 (13%)

Query: 37  VVVKRVRKFSDPDIVSD----------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
            V+K   K S PD   D           +P   +YN++LNA     K  +    F     
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 142

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
            G  P++ TYN++IK+  R  +      +L  + E G +  + ++ +L+ +    G +  
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSD 202

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
           A  +   M E  R V   +   ++       +GD  +  E++E+LL             P
Sbjct: 203 ALKLFDEMPE--RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKG-----------P 249

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
             + PN   Y  ++ G    G+  ++  +   M++ E      D  TY+T++  L  +G+
Sbjct: 250 SVY-PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ---DLYTYSTLIHGLCGSGN 305

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A +V  EM   GV  + + YN +L GY +  +I++  EL + M  +      VVSYN
Sbjct: 306 LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC--RTVVSYN 363

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILI G         A++ +  +  +      ++Y  L+     +     A  + +E   +
Sbjct: 364 ILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA-EN 422

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE--------------NGF-------- 424
            R  +D  A++ ++ G CR G ++E   ++++M +              NGF        
Sbjct: 423 GRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLED 482

Query: 425 -------------YPNVATYGSLANGISLARKPGEALLLWKEIKER 457
                        +P V TY +L NG+S A +  EA  L KE+  +
Sbjct: 483 ALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHK 528



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 15/144 (10%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           L  G+ P VK  + ++  L +SG    VE +++L+  + +R              P+   
Sbjct: 561 LEKGFKPDVKMHNIIIHGLCSSGK---VEDALQLYSEMKQR-----------KCVPNLVT 606

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++     +   ++  +++D + ++G +PD+++YN+ +K      R    V  L   +
Sbjct: 607 HNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAV 666

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL 144
           + G+     T+  LV A +  G L
Sbjct: 667 DRGVLPTAITWNILVRAVLDNGAL 690


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 206/471 (43%), Gaps = 78/471 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR----KHL 111
           PD  +Y ++++     GK +K   LF++M + G + DV T +++I +  +  +      L
Sbjct: 154 PDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANEL 213

Query: 112 LVFVLERILEMGIT--------LCM-----------------------TTFQSLVAAYVG 140
           L  +++R   + I         LCM                         + +L+     
Sbjct: 214 LEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQ 273

Query: 141 FGDLEIAETIVQAMRE--GRRDV-CKIIRELDLEDYSSENEG-----DDDDDDEVFEKLL 192
            G++  A  + Q M    GR  + CK      L  YS   +G      +D+  E+F+++ 
Sbjct: 274 TGNINTALQLHQEMLNDTGRYGIKCKP----TLISYSIIIDGLCKDRREDEARELFKEMK 329

Query: 193 PNSINPSSEP----------------------PLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
              I P                           +L     P+    + L+     +G+V 
Sbjct: 330 AQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVI 389

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  ++L  + ++      PD VT TT+V  L     + +A Q+  +M ++G   N +T  
Sbjct: 390 EANKLLEVVIQR---GCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCA 446

Query: 291 ILLKGYCQQLQIDKAKELLREMADDA-----KIEPDVVSYNILIDGFILIDDSAGALTFF 345
            L+KG CQ   I  A EL + M  D        +P+ +SY+I+IDG         A   F
Sbjct: 447 TLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELF 506

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            EM+A G+ P  ISYT+L+  F  S + K A  +F+EM+ D  V+ D+  +++L++  C+
Sbjct: 507 KEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV-DIGVQPDVTTFSVLIDMLCK 565

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            G V EA  ++E M + G  PN  TY +L  G+ +  +  EA  L+ ++++
Sbjct: 566 EGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQK 616



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 197/408 (48%), Gaps = 20/408 (4%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  +++     GK +K   LF++M + G +PDV T +V+I +  +  +      +
Sbjct: 335 PDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKL 394

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE +++ G    + T  +LV        +  A  +   M+       K+    ++   ++
Sbjct: 395 LEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQ-------KLGCMPNVVTCAT 447

Query: 176 ENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             +G     + ++  +L  N ++ +S   +  K   PN+  Y+ ++ G    GR  +   
Sbjct: 448 LMKGLCQSGNIKIALELHKNMLSDTSPYGINCK---PNAISYSIIIDGLCKCGREDEARE 504

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M+        PD ++YT+++    ++G    A+ +  EM  IGV  +  T+++L+ 
Sbjct: 505 LFKEMKAL---GVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLID 561

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C++ ++ +A ELL  M     I P+ V+Y  L+ G  + D  + A   F +M+  G  
Sbjct: 562 MLCKEGKVIEANELLEVMIQRGCI-PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCL 620

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDP-----RVKVDIVAWNMLVEGYCRMGLV 409
           P  ++Y TLMK    +   K A ++  +ML D        K D+++++++++G C+ G  
Sbjct: 621 PDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGRE 680

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +EA+ + + MK  G  PNV +Y SL +G   + K  +A  L+ E+ ++
Sbjct: 681 DEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQ 728



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 133/258 (51%), Gaps = 9/258 (3%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L     P+      L+  +  EG+V +   +L  M ++       D VTY+T++  L  
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQR---GCILDIVTYSTLIKGLCM 57

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-----KI 318
              +  A Q+   M ++G   + I Y  L+KG CQ  +I+ A  L +EM +D      K 
Sbjct: 58  KHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKC 117

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +P +VSY+I+IDG         A   F EM+A+G+ P  ISYT+L+  F  S + + A  
Sbjct: 118 KPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKC 177

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+EML D  ++ D+   +ML++  C+ G V EA  ++E M + G   ++ TY +L  G+
Sbjct: 178 LFNEML-DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL 236

Query: 439 SLARKPGEALLLWKEIKE 456
            +  +  EA  L+  +++
Sbjct: 237 CMKHRISEATRLFMSMQK 254



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 212/461 (45%), Gaps = 66/461 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESV--KLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M   G +P V +++T++     SG     + +  ++ DV ++               PD 
Sbjct: 328 MKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQ---------------PDV 372

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLE 117
              + +++     GK  +  +L + + + G  PDV+T   ++K LC     KH +    +
Sbjct: 373 TTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCM----KHRISKATQ 428

Query: 118 RILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV---CK---IIREL 168
             L+M    CM    T  +L+      G+++IA  + + M          CK   I   +
Sbjct: 429 LFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSI 488

Query: 169 DLEDYSSENEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT--------------- 208
            ++       G +D+  E+F+++     +P+ I+ +S      ++               
Sbjct: 489 IIDGLC--KCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 546

Query: 209 --FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
               P+   ++ L+     EG+V +   +L  M ++      P+ VTYTT+V  L     
Sbjct: 547 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQR---GCIPNTVTYTTLVKGLCMNDR 603

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-----KIEPD 321
           +  A Q+  +M ++G   + +TY  L+KG CQ   I  A EL ++M  D        +PD
Sbjct: 604 ISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPD 663

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           V+SY+I+IDG         A   F EM+A G+ P  ISYT+L+  F  S + + A  +F+
Sbjct: 664 VISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFN 723

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           EM+ D  V+++ V +++++ G+C+ G +++A  + ++M+ N
Sbjct: 724 EMV-DQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEAN 761



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/509 (22%), Positives = 213/509 (41%), Gaps = 79/509 (15%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            KP   +Y+ +++      +  +  +LF +M   G  PDV++Y  +I    R+ +     
Sbjct: 117 CKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAK 176

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +   +L++GI   +TT   L+      G +  A  +++ M + R  +      LD+  Y
Sbjct: 177 CLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQ-RGCI------LDIVTY 229

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--PNSRIYTTLMKGYMNEGRVSD 231
           S+  +G            + + I+ ++   +  +     P++  Y TLMKG    G ++ 
Sbjct: 230 STLIKG----------LCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINT 279

Query: 232 TVRMLGAMRRQEDN---ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
            +++   M            P  ++Y+ ++  L K    D AR++  EM   G+  + I+
Sbjct: 280 ALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVIS 339

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID------------------ 330
           Y  L+ G+C   + +KAK L  EM D   I+PDV + ++LID                  
Sbjct: 340 YTTLIHGFCLSGKWEKAKCLFNEMLD-VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVV 398

Query: 331 -----------------GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
                            G  +    + A   F +M+  G  P  ++  TLMK    S   
Sbjct: 399 IQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNI 458

Query: 374 KLANKVFDEMLRDP-----RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
           K+A ++   ML D        K + ++++++++G C+ G  +EA+ + + MK  G  P+V
Sbjct: 459 KIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDV 518

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            +Y SL +G   + K  +A  L+ E+                +   ++PD      L D+
Sbjct: 519 ISYTSLIHGFCRSGKWKDAKYLFNEM----------------VDIGVQPDVTTFSVLIDM 562

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             +     +A E++  M + G  PN   Y
Sbjct: 563 LCKEGKVIEANELLEVMIQRGCIPNTVTY 591



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/467 (21%), Positives = 184/467 (39%), Gaps = 76/467 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P V     ++      G    +E+ +L +V+V+R               D   
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGK--VIEANELLEVMVQR-----------GCILDIVT 47

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++       +  +  QLF  M + G +PD + Y  ++K   +  + ++ + + + +L
Sbjct: 48  YSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEML 107

Query: 121 ----EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
               + GI  C  T  S                I+  + + RR+                
Sbjct: 108 NDTSQYGIK-CKPTLVSY-------------SIIIDGLCKDRRE---------------- 137

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                D+  E+F+++    +              P+   YT+L+ G+   G+      + 
Sbjct: 138 -----DEARELFKEMKAQGM-------------MPDVISYTSLIHGFCRSGKWEKAKCLF 179

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M    D     D  T + ++  L K G +  A ++L  M + G   + +TY+ L+KG 
Sbjct: 180 NEML---DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL 236

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA----RG 352
           C + +I +A  L   M       PD ++Y  L+ G     +   AL    EM       G
Sbjct: 237 CMKHRISEATRLFMSM-QKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYG 295

Query: 353 IA--PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           I   PT ISY+ ++       +   A ++F EM +   +  D++++  L+ G+C  G  E
Sbjct: 296 IKCKPTLISYSIIIDGLCKDRREDEARELFKEM-KAQGIMPDVISYTTLIHGFCLSGKWE 354

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +AK +   M + G  P+V T   L + +    K  EA  L + + +R
Sbjct: 355 KAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR 401


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 212/509 (41%), Gaps = 93/509 (18%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P +  ++T+V+ L            K F  +   + K +D  +    KPD+   NA+
Sbjct: 52  GHKPTLITYTTLVAALTRQ---------KRFKSIPALLSKVADNGM----KPDSILLNAM 98

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI-LEMG 123
           +NA +  GK  + +++F +M E+G KP   TYN +IK    A R +  + +LE +  +  
Sbjct: 99  INAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDEN 158

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           +     T+  L+ A+     LE A  ++  M                             
Sbjct: 159 VKPNDRTYNILIQAWCTKKKLEEAWNVLHKM----------------------------- 189

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                                +     P+   Y T+ + Y   G      R++  M    
Sbjct: 190 ---------------------VASGIQPDVVTYNTMARAYAQNGETERAERLILKMPY-- 226

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
            N   P+  T   ++S   K G+M  A + L  M  +GV  N + +N L+KGY      +
Sbjct: 227 -NIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTN 285

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT----FFNEMRARGIAPTKIS 359
              E L  M ++  I+PDVV+++ +++ +     SAG +      FN+M   GI P   +
Sbjct: 286 GVDEALTLM-EEFGIKPDVVTFSTIMNAW----SSAGLMENCEEIFNDMVKAGIEPDIHA 340

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+ L K +  + QP+ A  +   M +   V+ ++V +  ++ G+C  G ++ A R+ E+M
Sbjct: 341 YSILAKGYVRAGQPRKAEALLTSMSKYG-VQPNVVIFTTIISGWCAAGKMDRAFRLCEKM 399

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
            E G  PN+ TY +L  G   A++P +A  L   ++ER  V                P+ 
Sbjct: 400 HEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVV----------------PEM 443

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEH 508
             +  +AD       F++A  I+   EE 
Sbjct: 444 STMQLVADAWRAIGLFKEANRILNGSEEE 472



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 210/462 (45%), Gaps = 37/462 (8%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           ++S     A   ++N     GKP +   +F+ + E G KP ++TY  ++    R  R   
Sbjct: 16  NNSCQTVHARTKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKS 75

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDL 170
           +  +L ++ + G+        +++ A+   G ++ A  I Q M+E G +        L +
Sbjct: 76  IPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTL-I 134

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           + +     G   +  ++ E +  +            +   PN R Y  L++ +  + ++ 
Sbjct: 135 KGFGI--AGRPYESMKLLEMMGQD------------ENVKPNDRTYNILIQAWCTKKKLE 180

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +   +L  M     +   PD VTY T+  A  + G  +RA +++ +M    V  N  T  
Sbjct: 181 EAWNVLHKMVA---SGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCG 237

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           I++ GYC++  + +A   L  M  +  ++P+ V +N LI G++   D+ G       M  
Sbjct: 238 IIISGYCKEGNMPEALRFLYRM-KELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEE 296

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            GI P  ++++T+M A++ +   +   ++F++M++   ++ DI A+++L +GY R G   
Sbjct: 297 FGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVK-AGIEPDIHAYSILAKGYVRAGQPR 355

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           +A+ ++  M + G  PNV  + ++ +G   A K   A  L +++ E              
Sbjct: 356 KAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEM------------G 403

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
             P LK  E L+    +    A    KA E++  MEE G+ P
Sbjct: 404 TSPNLKTYETLIWGYGE----AKQPWKAEELLTTMEERGVVP 441



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 133/296 (44%), Gaps = 21/296 (7%)

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           +N+    H   T +++ L+  G    A+ V   +T  G     ITY  L+    +Q +  
Sbjct: 16  NNSCQTVHAR-TKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFK 74

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
               LL ++AD+  ++PD +  N +I+ F        A+  F +M+  G  PT  +Y TL
Sbjct: 75  SIPALLSKVADNG-MKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTL 133

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +K F ++ +P  + K+ + M +D  VK +   +N+L++ +C    +EEA  ++ +M  +G
Sbjct: 134 IKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASG 193

Query: 424 FYPNVATYGSLANGISLARKP--GEALLL------WKEIKERCEVKKEGVNADSDLPPPL 475
             P+V TY ++A   +   +    E L+L       K  +  C +   G   + ++P  L
Sbjct: 194 IQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEAL 253

Query: 476 K-----------PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +           P+  + ++L    +         E +  MEE GI P+   +  I
Sbjct: 254 RFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTI 309



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++G  P + A+S +      +G     E++      +  + K+         +P+   
Sbjct: 329 MVKAGIEPDIHAYSILAKGYVRAGQPRKAEAL------LTSMSKYG-------VQPNVVI 375

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  +++     GK  +  +L ++MHE G  P++ TY  +I     A +      +L  + 
Sbjct: 376 FTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTME 435

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           E G+   M+T Q +  A+   G  + A  I+    E
Sbjct: 436 ERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSEE 471


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 208/488 (42%), Gaps = 52/488 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLVF 114
           P+   YN ++      G+  + + +F  M   G  P+  T N +++ LC        L  
Sbjct: 30  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALK- 88

Query: 115 VLERILEMGITLCMTTFQS-LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            L R ++ G  L  +   + L+  +   G +  A   +Q MR+    V      L L+  
Sbjct: 89  -LFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGL 147

Query: 174 SSENEGDD--DDDDEVFEKLLPNSINPSSEPPLL-------------------PKTFAPN 212
             EN+  +  +   E F+++  + + P  E   +                     T +P+
Sbjct: 148 CWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPD 207

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  LM GY   G+  +   +   M+        P+  TY+ +++   K   ++ A +
Sbjct: 208 IMTYNVLMDGYCKIGQTYEAQSL---MKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWE 264

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V  +M       N +T+N L+ G+C+   ++ A +L  EM +    +  +V+YN LID  
Sbjct: 265 VFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEM-EKIGCKATIVTYNTLIDS- 322

Query: 333 ILIDDSAGALT---FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            L     G  T    FN++   G+ PT ++Y +L++ F  + +   A + FDEM  + + 
Sbjct: 323 -LCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM--EGKC 379

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             +++ +++L++G C++  ++EA + +E MK +G+ P V TYG L NG     +   ALL
Sbjct: 380 APNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALL 439

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            ++++K                     P+  + + L D   +A      L ++  M   G
Sbjct: 440 FFEKMK----------------LAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEG 483

Query: 510 IPPNKTKY 517
             P+   Y
Sbjct: 484 CKPDVITY 491



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 177/401 (44%), Gaps = 60/401 (14%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  +PD  +Y+ +L+A ++ G+  +   LF  M      PD++TYNV++    +  + + 
Sbjct: 170 SGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYE 226

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              +++ IL+ G    + T+  ++  Y     +E A                        
Sbjct: 227 AQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAW----------------------- 263

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                         EVF K++ ++               PN+  + TL+ G+   G + D
Sbjct: 264 --------------EVFMKMIESNC-------------VPNAVTFNTLIAGFCKAGMLED 296

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA-GSMDRARQVLAEMTRIGVPANRITYN 290
            +++   M +    A+    VTY T++ +L K  G +  A  +  ++   G+    +TYN
Sbjct: 297 AIKLFAEMEKIGCKATI---VTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYN 353

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L++G+C   ++ +A +   EM  + K  P+V++Y+ILIDG   +     A     +M+A
Sbjct: 354 SLIQGFCDARRLSEAMQYFDEM--EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKA 411

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G  PT ++Y  L+  F    + K A   F++M +      + V +N L++G C+     
Sbjct: 412 HGYTPTVVTYGGLINGFCKCGELKSALLFFEKM-KLAGCAPNTVIFNTLIDGLCKAERAN 470

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           +  R++  M   G  P+V TY  L +G+  A +  +A  L+
Sbjct: 471 DGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLF 511



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 181/419 (43%), Gaps = 43/419 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P ++++  ++S L+ SG     E+  LF  +                 PD   
Sbjct: 167 MKASGVEPDLESYHILLSALSDSGR--MAEAHALFSAMT--------------CSPDIMT 210

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++    +G+  +   L  ++ + G +P+V TY+++I    +  +      V  +++
Sbjct: 211 YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMI 270

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--IIRELDLEDYSSENE 178
           E        TF +L+A +   G LE A   ++   E  +  CK  I+    L D   +  
Sbjct: 271 ESNCVPNAVTFNTLIAGFCKAGMLEDA---IKLFAEMEKIGCKATIVTYNTLIDSLCKKR 327

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G      ++F KL    + P+                Y +L++G+ +  R+S+ ++    
Sbjct: 328 GGVYTAVDLFNKLEGAGLTPTIVT-------------YNSLIQGFCDARRLSEAMQYFDE 374

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    +    P+ +TY+ ++  L K   M  A + L +M   G     +TY  L+ G+C+
Sbjct: 375 M----EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCK 430

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ K+  L  E    A   P+ V +N LIDG    + +   L     M A G  P  I
Sbjct: 431 CGEL-KSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVI 489

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           +Y  L+     +++ + A ++FD M   P    ++  +N L+ G C    VEEA+ I++
Sbjct: 490 TYNCLISGLCSANRVEDAQRLFDGMACAP----NVTTFNFLIRGLCAQKKVEEARNILD 544



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 34/324 (10%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L   FAPN+  Y  L++G+   G++   V +   M+    +   P+  T  T++  L +
Sbjct: 23  VLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMK---SSGLLPNASTMNTLLLGLCE 79

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G M  A ++  EM          ++NILL+G+       + ++ L  + D  K    V 
Sbjct: 80  IGQMSSALKLFREMQAGPFLPTSASHNILLRGF---FMAGRVRDALAHLQDMRKSSSSVA 136

Query: 324 --SYNILIDGFILIDDSAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
             +YN+++ G    + SA     A+ FF EM+A G+ P   SY  L+ A + S +   A+
Sbjct: 137 TGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAH 196

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +F  M   P    DI+ +N+L++GYC++G   EA+ +++ + + G+ PNV TY  + N 
Sbjct: 197 ALFSAMTCSP----DIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINC 252

Query: 438 ISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
                K  EA  +  K I+  C                  P+    + L     +A    
Sbjct: 253 YCKLDKVEEAWEVFMKMIESNC-----------------VPNAVTFNTLIAGFCKAGMLE 295

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
            A+++ A ME+ G       Y  +
Sbjct: 296 DAIKLFAEMEKIGCKATIVTYNTL 319



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 6/202 (2%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++S LV A   D+A ++  E+       N  TYN+L++G+C+  Q+ +A  +  +M    
Sbjct: 3   LLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 62

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            + P+  + N L+ G   I   + AL  F EM+A    PT  S+  L++ F ++ + + A
Sbjct: 63  LL-PNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDA 121

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYC----RMGLVEEAKRIIERMKENGFYPNVATYG 432
                +M R     V    +N++++G C        +E+A    + MK +G  P++ +Y 
Sbjct: 122 LAHLQDM-RKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 433 SLANGISLARKPGEALLLWKEI 454
            L + +S + +  EA  L+  +
Sbjct: 181 ILLSALSDSGRMAEAHALFSAM 202



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N L+ G +       AL  F E+ A   AP   +Y  L++ F    Q   A  VF +M +
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDM-K 59

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              +  +    N L+ G C +G +  A ++   M+   F P  A++  L  G  +A +  
Sbjct: 60  SSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVR 119

Query: 446 EALLLWKEIKE 456
           +AL   +++++
Sbjct: 120 DALAHLQDMRK 130


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 204/459 (44%), Gaps = 53/459 (11%)

Query: 12  AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANL 71
           A+ TVV+ L  SG+     + +LFD ++ R              PD  A+N +++     
Sbjct: 183 AYCTVVAGLYDSGEHD--HARELFDEMLARCLC-----------PDVVAFNKLVHVLCKK 229

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA-----RASRKHLLVFV---LERILEM 122
           G   +  +L  ++ + G  P++ T+N+ ++ LC      RA R   +V     L +++  
Sbjct: 230 GLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNG 289

Query: 123 GITLCMTTFQSLVAAYVGFGDLE-----IAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           G      T+ S++  Y   G ++     + + + +  +      C +I            
Sbjct: 290 GFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFC-------K 342

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +GD D    VF+  L   + PS               +Y TL+KG   +G +   ++++ 
Sbjct: 343 DGDPDRAMAVFKDGLGKGLRPSI-------------VLYNTLIKGLSQQGLILPALQLMN 389

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M    +N   P+  TY  V++ L K G +  A  ++ +    G P +  TYN L+ GYC
Sbjct: 390 EM---AENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYC 446

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +QL++D A E++  M     + PDV++YN L++G      S   +  F  M  +G  P  
Sbjct: 447 KQLKLDSATEMVNRMWSQG-MTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNI 505

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           I+Y  ++ +   + +   A  +  EM +   +K D+V++  L  G+C++G ++ A ++  
Sbjct: 506 ITYNIIVDSLCKAKKVNEAVDLLGEM-KSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFR 564

Query: 418 RM-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           RM K+       ATY  + +  S       A+ L+  +K
Sbjct: 565 RMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMK 603



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/475 (21%), Positives = 198/475 (41%), Gaps = 39/475 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +  P   ++NA++N     G   +  +++ +M + G + DV TY + IK   + +R +  
Sbjct: 106 NCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAA 165

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           + +L  + E+G       + ++VA     G+ + A  +   M    R +C  +   +   
Sbjct: 166 LRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLA--RCLCPDVVAFNKLV 223

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG----- 227
           +    +G   + + +  K+L   +              PN   +   ++G   EG     
Sbjct: 224 HVLCKKGLVFESERLLGKVLKRGV-------------CPNLFTFNIFVQGLCREGALDRA 270

Query: 228 -RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            R S  V     +R+  +    PD +TY +++    K G +  A +VL +    G   + 
Sbjct: 271 VRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDE 330

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            TY  L+ G+C+    D+A  + ++      + P +V YN LI G         AL   N
Sbjct: 331 FTYCSLINGFCKDGDPDRAMAVFKDGLGKG-LRPSIVLYNTLIKGLSQQGLILPALQLMN 389

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM   G  P   +Y  ++           A+ + D+ +       DI  +N L++GYC+ 
Sbjct: 390 EMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKG-CPPDIFTYNTLIDGYCKQ 448

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
             ++ A  ++ RM   G  P+V TY +L NG+  A K  E + ++K ++E+         
Sbjct: 449 LKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEK--------- 499

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
                     P+    + + D   +A    +A++++  M+  G+ P+   +  ++
Sbjct: 500 -------GCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLF 547



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 143/349 (40%), Gaps = 65/349 (18%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y   MK Y  +G+V + V       R +     P   ++  +++ LV+ G  ++A +V  
Sbjct: 79  YIEAMKNYGRKGKVQEAVD---TFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYM 135

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   GV ++  TY I +K +C+  +   A  LLR M  +   + + V+Y  ++ G    
Sbjct: 136 RMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMP-ELGCDSNAVAYCTVVAGLYDS 194

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLM-----KAFALSSQPKLANKV----------- 379
            +   A   F+EM AR + P  +++  L+     K     S+ +L  KV           
Sbjct: 195 GEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESE-RLLGKVLKRGVCPNLFT 253

Query: 380 -------------FDEMLRDPRV---------------KVDIVAWNMLVEGYCRMGLVEE 411
                         D  +R+ RV               + D + +N +++GYC+ G+V++
Sbjct: 254 FNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQD 313

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A R+++     GF P+  TY SL NG      P  A+ ++K+                 L
Sbjct: 314 ANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKD----------------GL 357

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              L+P   L + L     +      AL+++  M E+G  PN   Y  +
Sbjct: 358 GKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLV 406



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/347 (18%), Positives = 138/347 (39%), Gaps = 77/347 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG---------DDGPVESV--------KLFDVVVKRVR 43
           M  +G LP++  ++ V++ L   G         DD   +           L D   K+++
Sbjct: 391 MAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLK 450

Query: 44  KFSDPDIVS-----DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             S  ++V+        PD   YN +LN     GK ++ +++F  M E G  P+++TYN+
Sbjct: 451 LDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNI 510

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           ++    +A + +  V +L  +   G+   + +F +L   +   GD++ A  + + M E +
Sbjct: 511 IVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM-EKQ 569

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
            DVC                                                  +  Y  
Sbjct: 570 YDVCH------------------------------------------------TTATYNI 581

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE-M 277
           ++  +  +  ++  +++   M+   ++   PD+ TY  V+    K G++ +  + L E M
Sbjct: 582 IVSAFSEQLNMNMAMKLFSVMK---NSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENM 638

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
            +  +P+   T+  +L   C + ++ +A  ++  M     I P+ V+
Sbjct: 639 EKRFIPS-LTTFGRVLNCLCVKDKVHEAVGIIHLMLQKG-IVPETVN 683


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 145/317 (45%), Gaps = 24/317 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+  IY  L+ GY          + L  M +   N   P  VTYT +V  L KAG    A
Sbjct: 43  PDDAIYNALISGYSKAKDFGQAFKFLAEMVK---NHCLPTVVTYTNIVDGLCKAGRTKDA 99

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EM   G   N  TYN++++G C++ ++D+AK++L EMA      PDVV+YN  I 
Sbjct: 100 VKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF-PDVVTYNSFIK 158

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G    D    A  F   M    + P  +SYTT++     S     A+++ D+M  +    
Sbjct: 159 GLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQM-TNRGCT 214

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+V ++ L++G+C+ G VE A  +++ M + G  PN+  Y SL   +      G+A  +
Sbjct: 215 PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDM 274

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             E++ R                   PD    +A  D   +A   +KA  +   M E G 
Sbjct: 275 LVEMERR----------------GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGC 318

Query: 511 PPNKTKYKKIYVEMHSR 527
            PN + Y  +  E+  +
Sbjct: 319 TPNASSYSMLVEELCKK 335



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 173/407 (42%), Gaps = 58/407 (14%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +PD   +  +L       + +K  QL  +M E G  PD   YN +I   +  S+     
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALI---SGYSKAKDFG 62

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
              + + EM    C+ T    V  Y       I + + +A R   +D  K++ E+     
Sbjct: 63  QAFKFLAEMVKNHCLPT----VVTYT-----NIVDGLCKAGRT--KDAVKLLDEMR---- 107

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                            K  +PN   Y  +++G   E ++ +  
Sbjct: 108 --------------------------------DKGCSPNIYTYNVIVEGLCEERKLDEAK 135

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +ML  M  +      PD VTY + +  L K   +D AR+ LA   R+ V  + ++Y  ++
Sbjct: 136 KMLEEMAVR---GYFPDVVTYNSFIKGLCKCDRVDEARKFLA---RMPVTPDVVSYTTVI 189

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+   +D A  +L +M +     PDVV+Y+ LIDGF    +   A+   + M   G 
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRG-CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 248

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  ++Y +L+ A         A  +  EM R      D+V++N  ++G C+   V++AK
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTP-DVVSYNACIDGLCKAERVKKAK 307

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            + +RM E G  PN ++Y  L   +   ++  +A+ L ++ +E+ ++
Sbjct: 308 AVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQI 354



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 185/460 (40%), Gaps = 62/460 (13%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY P V  +++ +  L                  V   RKF     V+   PD  +Y  V
Sbjct: 145 GYFPDVVTYNSFIKGLCKCDR-------------VDEARKFLARMPVT---PDVVSYTTV 188

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G      ++ DQM   G  PDV+TY+ +I    +       + +L+ +L++G 
Sbjct: 189 INGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 248

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              M  + SL+ A    G +  AE ++  M   RR         D+  Y++  +G    +
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEME--RRGFTP-----DVVSYNACIDGLCKAE 301

Query: 185 -----DEVFEKLLPNSINP--SSEPPLLPK-----------TFAPNSR---------IYT 217
                  VF++++     P  SS   L+ +           T    +R         +YT
Sbjct: 302 RVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYT 361

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ G    GR  +   +    +  ++    PD   Y  ++ +  K   +D+A Q+  +M
Sbjct: 362 VLLDGLCKGGRFDEACALFS--KVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQM 419

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
                  N +T+NIL+ G C   ++  A+ +L  M D+  I PD V+Y  L+D       
Sbjct: 420 LERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFI-PDFVTYGTLVDAMCKCGK 477

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
           SA AL  F E    G  P  ++Y+ L+      +  + A  +F         K+D+  WN
Sbjct: 478 SAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLF--------TKLDVALWN 529

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            ++ GY   G  +   ++   + E+   PN  T+G   +G
Sbjct: 530 AMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISG 569



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/494 (20%), Positives = 203/494 (41%), Gaps = 72/494 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P    ++ ++S  + + D G     + F  + + V+    P +V+        
Sbjct: 36  MKEMGCVPDDAIYNALISGYSKAKDFG-----QAFKFLAEMVKNHCLPTVVT-------- 82

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++     G+ K  ++L D+M + G  P++ TYNV+++      +      +LE + 
Sbjct: 83  YTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 142

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
             G    + T+ S +                  + E R+ + ++    D+  Y++   G 
Sbjct: 143 VRGYFPDVVTYNSFIKGLCK----------CDRVDEARKFLARMPVTPDVVSYTTVINGL 192

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
               D +   ++L    N    P ++          Y++L+ G+   G V   + +L +M
Sbjct: 193 CKSGDLDSASRMLDQMTNRGCTPDVVT---------YSSLIDGFCKGGEVERAMGLLDSM 243

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            +       P+ V Y +++ AL + G + +A  +L EM R G   + ++YN  + G C+ 
Sbjct: 244 LKL---GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKA 300

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ KAK +   M +     P+  SY++L++      +   A+T   + R +      + 
Sbjct: 301 ERVKKAKAVFDRMVERG-CTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILL 359

Query: 360 YTTLMKAFA----LSSQPKLANKVFDEMLRDP---------------------------- 387
           YT L+              L +KV DE + +P                            
Sbjct: 360 YTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQM 419

Query: 388 --RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
             R   ++V WN+LV G C    + +A+ ++  M + GF P+  TYG+L + +    K  
Sbjct: 420 LERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSA 479

Query: 446 EALLLWKE-IKERC 458
            AL L++E +K  C
Sbjct: 480 AALELFEEAVKGGC 493



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 115/255 (45%), Gaps = 18/255 (7%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            T+ ILL+G C+  Q++KA++LL  M +   + PD   YN LI G+    D   A  F  
Sbjct: 11  FTFAILLRGLCRSNQLEKARQLLGRMKEMGCV-PDDAIYNALISGYSKAKDFGQAFKFLA 69

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM      PT ++YT ++     + + K A K+ DEM RD     +I  +N++VEG C  
Sbjct: 70  EMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEM-RDKGCSPNIYTYNVIVEGLCEE 128

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK---- 462
             ++EAK+++E M   G++P+V TY S   G+    +  EA      +    +V      
Sbjct: 129 RKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTV 188

Query: 463 -EGVNADSDLPPPLK-----------PDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             G+    DL    +           PD     +L D   +     +A+ ++  M + G 
Sbjct: 189 INGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 248

Query: 511 PPNKTKYKKIYVEMH 525
            PN   Y  +   +H
Sbjct: 249 RPNMVAYNSLLGALH 263



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 181/451 (40%), Gaps = 64/451 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V  +S+++      G+             V+R     D  +    +P+  A
Sbjct: 208 MTNRGCTPDVVTYSSLIDGFCKGGE-------------VERAMGLLDSMLKLGCRPNMVA 254

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++L A   LG   K   +  +M   G  PDV++YN  I    +A R      V +R++
Sbjct: 255 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMV 314

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G T   +++  LV       +L+ A T+V+  RE  + V  ++  + L+       G 
Sbjct: 315 ERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLC--KGGR 372

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI------------------------- 215
            D+   +F K+L   I    EP +       +S                           
Sbjct: 373 FDEACALFSKVLDEKI---CEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVT 429

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  L+ G   + R+SD   ML  M    D    PD VTY T+V A+ K G    A ++  
Sbjct: 430 WNILVHGLCVDDRLSDAETMLLTMV---DEGFIPDFVTYGTLVDAMCKCGKSAAALELFE 486

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           E  + G   + +TY+ L+ G   +   ++A  L  ++        DV  +N +I G+   
Sbjct: 487 EAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL--------DVALWNAMILGYAEN 538

Query: 336 DDSAGALTFFNEMRARGIAPTKISY-----TTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                 L  F E+    + P   ++       L+KA +L      A  +FD  ++     
Sbjct: 539 GSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGK----ARGLFDRAVKGGFFP 594

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            D+   N L++ + + G +EEA+RI   MK+
Sbjct: 595 -DLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|449435418|ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
 gi|449494962|ref|XP_004159696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 176/402 (43%), Gaps = 56/402 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  A+N  LN        +  L+ FD+M   G +PDV+TY +++    +A +    V  
Sbjct: 112 PDIWAFNIYLNLLFRENLLELALKFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEF 171

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              ++  G++  M    +LV      G +++A  +     +G                  
Sbjct: 172 WRCMVNKGLSPDMKACTALVVGLCDGGKVDLAYELTVGEMKGEMKF-------------- 217

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                               N+ I+ +LM G+   GR+S  + +
Sbjct: 218 ------------------------------------NNLIFNSLMSGFCKSGRISKALAI 241

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M +   +   PD +TY  +++       ++ A + + +M RIG+  +  +YN LLKG
Sbjct: 242 KSFMSK---HGCEPDLITYNILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSYNQLLKG 298

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  ++DKA +L+  M +      D VSYN +I        +  A   F EM  + +AP
Sbjct: 299 LCKANRLDKAYKLMNTMWEKGLC--DTVSYNTVIGALCKSFATRKAYRLFEEMGQKDVAP 356

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              ++ TL+KAF +   P +A  +   M +   +  D++ +  +V+ +C+   +E A+ +
Sbjct: 357 DVGTFATLIKAFLIEGSPHIAKGLLQTMTQTVLIP-DLIFYTTVVDYFCKTRKIEMAQGV 415

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              M E G  P+V +Y +L NG+  A K  EA+LL++E++ R
Sbjct: 416 FRDMIEIGISPDVVSYNALINGLCKASKVSEAMLLYEEMQIR 457



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 4/185 (2%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TY+  +SAL +  +     ++L +M ++G   +   +NI L    ++  ++ A +   EM
Sbjct: 81  TYSRFISALCEIKNFGLIGRLLEDMKQLGYLPDIWAFNIYLNLLFRENLLELALKFFDEM 140

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
               + EPDVV+Y I++D          A+ F+  M  +G++P   + T L+       +
Sbjct: 141 VAKGR-EPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLSPDMKACTALVVGLCDGGK 199

Query: 373 PKLANKV-FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
             LA ++   EM     +K + + +N L+ G+C+ G + +A  I   M ++G  P++ TY
Sbjct: 200 VDLAYELTVGEM--KGEMKFNNLIFNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITY 257

Query: 432 GSLAN 436
             L N
Sbjct: 258 NILLN 262



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 103/269 (38%), Gaps = 20/269 (7%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           + + +   ++  VK G +D A ++  EMT+   P     YN  +     + + D A+   
Sbjct: 8   NRLVFRASITKCVKVGLIDEAIRIFDEMTQSDCPVTSRDYNRFIGVLISRSRFDLAESYY 67

Query: 310 REMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             M      + P   +Y+  I     I +         +M+  G  P   ++   +    
Sbjct: 68  SRMIPQGFSLTP--FTYSRFISALCEIKNFGLIGRLLEDMKQLGYLPDIWAFNIYLNLLF 125

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             +  +LA K FDEM+   R + D+V + ++V+  C+    ++A      M   G  P++
Sbjct: 126 RENLLELALKFFDEMVAKGR-EPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLSPDM 184

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
               +L  G+    K   A  L                   ++   +K +  + ++L   
Sbjct: 185 KACTALVVGLCDGGKVDLAYEL----------------TVGEMKGEMKFNNLIFNSLMSG 228

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             ++    KAL I + M +HG  P+   Y
Sbjct: 229 FCKSGRISKALAIKSFMSKHGCEPDLITY 257



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 16/100 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YNA++N      K  + + L+++M   G  PD +T+ ++I    R     L   V
Sbjct: 426 PDVVSYNALINGLCKASKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLRKKELSLACQV 485

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
            ++++E G TL                D  ++ET+++A+R
Sbjct: 486 WDQMMEKGYTL----------------DKFLSETLIKAIR 509


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/491 (24%), Positives = 214/491 (43%), Gaps = 51/491 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K +T  +N ++  C    K  + + L  +M +F   PD ++YN ++ +  +  + +    
Sbjct: 209 KVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARD 268

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +   G+     TF  LV+ Y   G L+ A  ++  M +       ++ ++   +  
Sbjct: 269 LLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNN-----VLPDVWTYNML 323

Query: 175 SENEGDDDDDDEVFE--------KLLPNS------INPSSEPPLLPKTF----------- 209
                 D   DE F         KLLP+       IN   +     K F           
Sbjct: 324 IGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGV 383

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN+  Y  ++K Y+ EG++ +    L   R+ E++   PD VT+ T+++   KAG +  
Sbjct: 384 KPNAVTYNVVVKWYVKEGKMDNAGNEL---RKMEESGFSPDCVTFNTLINGYCKAGRLSE 440

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +++ EM+R G+  N +T N +L   C + ++D A +LL   +       D VSY  LI
Sbjct: 441 AFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYF-VDEVSYGTLI 499

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G+     S  A+  ++EM+ + I P+ I+Y T++     S +   +    +E+L    V
Sbjct: 500 MGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLV 559

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D   +N ++ GYCR G VE+A +   +M +  F P++ T   L  G+       +AL 
Sbjct: 560 P-DETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALK 618

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L+     + +   + V  ++ +    K D                F +A +++A MEE  
Sbjct: 619 LFNTWISKGKA-IDAVTYNTIISGLCKEDR---------------FEEAFDLLAEMEEKK 662

Query: 510 IPPNKTKYKKI 520
           + P+   Y  I
Sbjct: 663 LGPDCYTYNAI 673



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 166/368 (45%), Gaps = 20/368 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++N C +     K  +L D+M   G KP+ +TYNV++K   +  +       
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNE 409

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++ E G +    TF +L+  Y   G L  A  ++  M      +  +     L     
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCG 469

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E + DD        KLL ++           + +  +   Y TL+ GY  +G+  + +++
Sbjct: 470 ERKLDDA------YKLLSSAS---------KRGYFVDEVSYGTLIMGYFKDGKSVEAMKL 514

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M+ +E     P  +TY T++  L  +G  D++   L E+   G+  +  TYN ++ G
Sbjct: 515 WDEMKEKE---IIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILG 571

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++ Q++KA +   +M   +  +PD+ + NIL+ G         AL  FN   ++G A 
Sbjct: 572 YCREGQVEKAFQFHNKMVKKS-FKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAI 630

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y T++       + + A  +  EM  + ++  D   +N ++      G ++EA+  
Sbjct: 631 DAVTYNTIISGLCKEDRFEEAFDLLAEM-EEKKLGPDCYTYNAILSALADAGRMKEAEEF 689

Query: 416 IERMKENG 423
           + R+ E G
Sbjct: 690 MSRIVEQG 697



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 110/515 (21%), Positives = 215/515 (41%), Gaps = 84/515 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G LP+   ++ +VS     G     E+ ++ D++ +           ++  PD   
Sbjct: 273 MKNNGLLPNRNTFNILVSGYCKLG--WLKEAAQVIDLMAQ-----------NNVLPDVWT 319

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++      GK  +  +L D+M      PDV+TYN +I  C   S       +++++ 
Sbjct: 320 YNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKME 379

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     T+  +V  YV  G ++ A   ++ M E                        
Sbjct: 380 GKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEES----------------------- 416

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                       F+P+   + TL+ GY   GR+S+  RM+  M 
Sbjct: 417 ---------------------------GFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMS 449

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R+       + VT  T++  L     +D A ++L+  ++ G   + ++Y  L+ GY +  
Sbjct: 450 RK---GLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDG 506

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +  +A +L  EM  + +I P +++YN +I G      +  ++   NE+   G+ P + +Y
Sbjct: 507 KSVEAMKLWDEMK-EKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTY 565

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            T++  +    Q + A +  ++M++    K D+   N+L+ G C  G++++A ++     
Sbjct: 566 NTIILGYCREGQVEKAFQFHNKMVKKS-FKPDLFTCNILLRGLCTEGMLDKALKLFNTWI 624

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G   +  TY ++ +G+    +  EA  L  E++E+             L P       
Sbjct: 625 SKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEK------------KLGPDCYTYNA 672

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +L ALAD    A   ++A E ++ + E G   ++T
Sbjct: 673 ILSALAD----AGRMKEAEEFMSRIVEQGKLQDQT 703



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK---AGSMDRAR 271
           I  T +  Y+   R     ++   M+R       P+ +T  T+++ALV+     S+  ++
Sbjct: 141 ILDTSIGAYVACNRPHHAAQIFNRMKRLH---LKPNLLTCNTLINALVRYPSKPSVYLSK 197

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            + +++ ++GV  N  T+NIL+ G C + ++ +A  L+ +M D +   PD VSYN ++D 
Sbjct: 198 AIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCF-PDNVSYNTILDV 256

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                    A     +M+  G+ P + ++  L+  +      K A +V D M ++  V  
Sbjct: 257 LCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQN-NVLP 315

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           D+  +NML+ G C+ G ++EA R+ + M+     P+V TY +L NG
Sbjct: 316 DVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLING 361



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 133/348 (38%), Gaps = 75/348 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG---------DDGPVESVKLFDVVVKRV-------RK 44
           M  SG+ P    ++T+++    +G         D+   + +K+  V +  +       RK
Sbjct: 413 MEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERK 472

Query: 45  FSDP-DIVSDSKP-----DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             D   ++S +       D  +Y  ++      GK  + ++L+D+M E    P ++TYN 
Sbjct: 473 LDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNT 532

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           MI     + +    +  L  +LE G+    TT+ +++  Y   G +E A           
Sbjct: 533 MIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKA----------- 581

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                         +   N+                         ++ K+F P+      
Sbjct: 582 --------------FQFHNK-------------------------MVKKSFKPDLFTCNI 602

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L++G   EG +   +++      +       D VTY T++S L K    + A  +LAEM 
Sbjct: 603 LLRGLCTEGMLDKALKLFNTWISK---GKAIDAVTYNTIISGLCKEDRFEEAFDLLAEME 659

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
              +  +  TYN +L       ++ +A+E +  + +  K++   +S N
Sbjct: 660 EKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLN 707



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 24/206 (11%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPK- 374
           K++   V  +  I  ++  +    A   FN M+   + P  ++  TL+ A     S+P  
Sbjct: 134 KVQSLRVILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSV 193

Query: 375 -LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
            L+  +F ++++   VKV+   +N+L+ G C    + EA  +I +MK+   +P+  +Y +
Sbjct: 194 YLSKAIFSDVIK-LGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNT 252

Query: 434 LANGISLARKPGEA--LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
           + + +    K  EA  LLL        ++K  G          L P+    + L     +
Sbjct: 253 ILDVLCKKGKLNEARDLLL--------DMKNNG----------LLPNRNTFNILVSGYCK 294

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKY 517
             + ++A +++  M ++ + P+   Y
Sbjct: 295 LGWLKEAAQVIDLMAQNNVLPDVWTY 320


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 178/378 (47%), Gaps = 26/378 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   ++ V+N    +GK +K   + + M  +G  P V+TYN +I    +A +      +L
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALL 287

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSS 175
           + ++   I     TF  L+  +    ++  A+ + + M R+G +         ++  Y+S
Sbjct: 288 KEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQP--------NVVTYNS 339

Query: 176 ENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              G   +   DE              +  +      PN   Y  L+ G+  +  + +  
Sbjct: 340 LINGLCSNGKLDEAL----------GLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAR 389

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ML  + ++      P+ +T+ T++ A  KAG MD A  + + M   GV  N  TYN L+
Sbjct: 390 EMLDDIGKR---GLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C++  + +A++L +EM  +  ++ D+V+YNIL+D      ++  A+   +EM   G+
Sbjct: 447 VGFCREGNVKEARKLAKEMEGNG-LKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGL 505

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P+ ++Y  L+  +        A  V   M +  R + +IV +N+L++G+C  G +EEA 
Sbjct: 506 NPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGR-RANIVTYNVLIKGFCNKGKLEEAN 564

Query: 414 RIIERMKENGFYPNVATY 431
           R++  M E G  PN  TY
Sbjct: 565 RLLNEMLEKGLIPNRTTY 582



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 153/316 (48%), Gaps = 22/316 (6%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VT+  V++ L K G   +A  V+ +M   G   + ITYN ++ GYC+  ++ KA  LL+E
Sbjct: 230 VTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKE 289

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M    +I P+ +++NILIDGF   ++   A   F EM+ +G+ P  ++Y +L+     + 
Sbjct: 290 MVAK-RIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +   A  + D+M     +K ++V +N L+ G+C+  +++EA+ +++ + + G  PNV T+
Sbjct: 349 KLDEALGLQDKM-SGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITF 407

Query: 432 GSLANGISLARKPGEALLLWKEIKE----------RC---------EVKKEGVNADSDLP 472
            +L +    A +  +A LL   + +           C          VK+    A     
Sbjct: 408 NTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEG 467

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             LK D    + L D   +    RKA+ ++  M E G+ P+   Y  + ++ + R   S 
Sbjct: 468 NGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNAL-IDGYFREGNST 526

Query: 533 HASQARQDRRRERKRA 548
            A   R    ++ +RA
Sbjct: 527 AALNVRTLMEKKGRRA 542



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 172/414 (41%), Gaps = 53/414 (12%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+ FD+  ++G +   L+ N M+    +  R  ++  V + ++   I + + TF  ++  
Sbjct: 179 LEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVING 238

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
               G  + A  +V+ M+        I     ++ Y     G     D + ++++   I+
Sbjct: 239 LCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKA--GKMFKADALLKEMVAKRIH 296

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
           P             N   +  L+ G+  +  V+   ++   M+RQ      P+ VTY ++
Sbjct: 297 P-------------NEITFNILIDGFCRDENVTAAKKVFEEMQRQ---GLQPNVVTYNSL 340

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE---------- 307
           ++ L   G +D A  +  +M+ +G+  N +TYN L+ G+C++  + +A+E          
Sbjct: 341 INGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL 400

Query: 308 ------------------------LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
                                   LLR M  D  + P+V +YN LI GF    +   A  
Sbjct: 401 APNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARK 460

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
              EM   G+    ++Y  L+ A     + + A ++ DEM  +  +    + +N L++GY
Sbjct: 461 LAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMF-EVGLNPSHLTYNALIDGY 519

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            R G    A  +   M++ G   N+ TY  L  G     K  EA  L  E+ E+
Sbjct: 520 FREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEK 573



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 26/285 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +P+   YN+++N   + GK  + L L D+M   G KP+V+TYN +I   C +   K    
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEARE 390

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L+ I + G+   + TF +L+ AY   G ++ A  +   M +    VC  +   +    
Sbjct: 391 -MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLD--TGVCPNVSTYNCLIV 447

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               EG+  +  ++ +++  N +               +   Y  L+     +G     V
Sbjct: 448 GFCREGNVKEARKLAKEMEGNGL-------------KADLVTYNILVDALCKKGETRKAV 494

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R+L  M     N   P H+TY  ++    + G+   A  V   M + G  AN +TYN+L+
Sbjct: 495 RLLDEMFEVGLN---PSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLI 551

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID-----GFI 333
           KG+C + ++++A  LL EM +   I P+  +Y+IL D     GFI
Sbjct: 552 KGFCNKGKLEEANRLLNEMLEKGLI-PNRTTYDILRDEMMEKGFI 595



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 17/180 (9%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL  F+     G   + +S   ++ +     +  +   V+ EM+R  R+ V++V +++++
Sbjct: 178 ALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRR-RIGVNVVTFDVVI 236

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            G C++G  ++A  ++E MK  GF P+V TY ++ +G   A K  +A  L KE+      
Sbjct: 237 NGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM------ 290

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                     +   + P+E   + L D   R      A ++   M+  G+ PN   Y  +
Sbjct: 291 ----------VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSL 340



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G  P+V  ++ ++      G+             VK  RK +     +  K D   
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGN-------------VKEARKLAKEMEGNGLKADLVT 476

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++A    G+ +K ++L D+M E G  P  LTYN +I    R       + V   + 
Sbjct: 477 YNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLME 536

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           + G    + T+  L+  +   G LE A  ++  M E
Sbjct: 537 KKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLE 572


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 201/450 (44%), Gaps = 56/450 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           M   G +P+   ++TV+     +G             D G   +V  ++ V+  + K S 
Sbjct: 382 MTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSR 441

Query: 48  PDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            + V         +   P+ A +N +L  C+  GK     ++  +M   G +PD  T+N 
Sbjct: 442 TEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNT 501

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I   AR   +     +   +++ G T C+TT+ +L+ A    GD + AE+++Q MR   
Sbjct: 502 LISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKG 561

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
               +    L L  YS    G+    ++V +++    + PS    +L +T    +     
Sbjct: 562 FKPNENSYSLLLHCYS--KAGNVKGIEKVEKEIYDGHVFPSW---ILLRTLVLTNH---- 612

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDN----ASHPDHVTYTTVVSALVKAGSMDRARQVL 274
                          R L  M R  D        PD V   +++S   +     +AR++L
Sbjct: 613 -------------KCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREML 659

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI- 333
             +   G+  N  TYN L+  Y ++ +  KA+E+L+ + +    EPDVVSYN +I GF  
Sbjct: 660 HFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGP-EPDVVSYNTVIKGFCR 718

Query: 334 --LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
             L+ ++ G L+   EM  +GI PT ++Y T +  +A       AN+V   M+ +   + 
Sbjct: 719 KGLMQEAIGVLS---EMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMI-EHNCRP 774

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
             + + +LV+GYC+ G  EEA   + ++KE
Sbjct: 775 SELTYKILVDGYCKAGKYEEAMDFVSKIKE 804



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 174/412 (42%), Gaps = 69/412 (16%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           KLFD++   V K+S          D  AY  +L++ A  GK K+ + LF +M E G  P 
Sbjct: 201 KLFDLI--PVEKYS---------LDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPT 249

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           ++TYNVM+ +  +  R        +RILE+           + +  +   +   +  I  
Sbjct: 250 LVTYNVMLDVYGKMGRS------WDRILEL--------LDEMRSKGLELDEFTCSTVISA 295

Query: 153 AMREGRRDVC-KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
             REG  D   K + EL    Y                                     P
Sbjct: 296 CGREGMLDEARKFLAELKFNGYK------------------------------------P 319

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
            +  Y ++++ +   G  ++ + +L  M   EDN   PD VTY  + +  V+AG +D   
Sbjct: 320 GTVTYNSMLQVFGKAGIYTEALSILKEM---EDNNCPPDSVTYNELAATYVRAGFLDEGM 376

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            V+  MT  GV  N ITY  ++  Y +  + D A  L   M  D    P+V +YN ++  
Sbjct: 377 AVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMK-DLGCAPNVYTYNSVLAM 435

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                 +   +    EM+  G AP + ++ T++   +   +    NKV  EM ++   + 
Sbjct: 436 LGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREM-KNCGFEP 494

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           D   +N L+  Y R G   ++ ++   M ++GF P V TY +L N  +LAR+
Sbjct: 495 DKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLN--ALARR 544



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/500 (20%), Positives = 193/500 (38%), Gaps = 106/500 (21%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  V++A    G+    L+LF  M + G  P+V TYN ++ +  + SR   ++ V
Sbjct: 389 PNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKV 448

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYS 174
           L  +   G      T+ +++A                   EG+ + V K++RE+      
Sbjct: 449 LCEMKLNGCAPNRATWNTMLAV---------------CSEEGKHNYVNKVLREM------ 487

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N G                             F P+   + TL+  Y   G   D+ +
Sbjct: 488 -KNCG-----------------------------FEPDKDTFNTLISAYARCGSEVDSAK 517

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M G M +   +   P   TY  +++AL + G    A  V+ +M   G   N  +Y++LL 
Sbjct: 518 MYGEMVK---SGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLH 574

Query: 295 GYCQQLQIDKAKELLREMADDAKI----------------------------------EP 320
            Y +   +   +++ +E+ D                                      +P
Sbjct: 575 CYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKP 634

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D+V  N ++  F      + A    + +   G+ P   +Y  LM  +    +   A +V 
Sbjct: 635 DLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVL 694

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            + +++   + D+V++N +++G+CR GL++EA  ++  M   G  P + TY +  +G + 
Sbjct: 695 -KGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYA- 752

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
                  + L+ E  E      E            +P E     L D   +A  + +A++
Sbjct: 753 ------GMELFDEANEVIRFMIE---------HNCRPSELTYKILVDGYCKAGKYEEAMD 797

Query: 501 IVACMEEHGIPPNKTKYKKI 520
            V+ ++E  I  +    K++
Sbjct: 798 FVSKIKELDISFDDQSVKRL 817



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 9/207 (4%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKELLREM 312
           YTT++ +  + G   RA  +  +M  IG+    +TYN++L  Y +  +  D+  ELL EM
Sbjct: 218 YTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEM 277

Query: 313 ADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
                +E D  + + +I       ++D+   A  F  E++  G  P  ++Y ++++ F  
Sbjct: 278 RSKG-LELDEFTCSTVISACGREGMLDE---ARKFLAELKFNGYKPGTVTYNSMLQVFGK 333

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +     A  +  EM  D     D V +N L   Y R G ++E   +I+ M   G  PN  
Sbjct: 334 AGIYTEALSILKEM-EDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAI 392

Query: 430 TYGSLANGISLARKPGEALLLWKEIKE 456
           TY ++ +    A +  +AL L+  +K+
Sbjct: 393 TYTTVIDAYGKAGREDDALRLFSLMKD 419



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 18/205 (8%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKL 375
           K   DV +Y  ++  +        A+  F +M+  G+ PT ++Y  ++  +  +      
Sbjct: 210 KYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDR 269

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
             ++ DEM R   +++D    + ++    R G+++EA++ +  +K NG+ P   TY S+ 
Sbjct: 270 ILELLDEM-RSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSML 328

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
                A    EAL + KE++            D++ PP    D    + LA   VRA F 
Sbjct: 329 QVFGKAGIYTEALSILKEME------------DNNCPP----DSVTYNELAATYVRAGFL 372

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            + + ++  M   G+ PN   Y  +
Sbjct: 373 DEGMAVIDTMTSKGVMPNAITYTTV 397


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 188/427 (44%), Gaps = 45/427 (10%)

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           LTY +MI+  A       + ++L+++   GI+     F S++ +Y   G  E A      
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYR 136

Query: 154 MREGR-RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
           M++ R +   KI   + L+    EN          F+ + P   N   +         PN
Sbjct: 137 MQDFRVKPTVKIYNHI-LDALLDENR---------FQMINPIYSNMKKD------GMEPN 180

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  L+K      RV    ++L  M  +      PD V+YTT++S+L K G +  AR+
Sbjct: 181 VFTYNILLKALCKNNRVDGAHKLLVEMSSK---GCDPDEVSYTTLISSLCKLGKVKEARE 237

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +    T   VP     YN L+ G C++   ++A +LL EM +   I+P+V+SY  +I+  
Sbjct: 238 LAMSFTP-SVP----VYNALINGVCKEYTFEEAFQLLDEMMNKG-IDPNVISYTTIINAL 291

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
               +   +L    +M ARG +P   ++T+L+K F L      A   +D M+R+  V  +
Sbjct: 292 SDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVP-N 350

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +VA+N L+ G C    + +A  +  +M+ NG  PNV TY +L +G + A     A  +W 
Sbjct: 351 VVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWN 410

Query: 453 -EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
             I   C                  P+      + D+  R + F +A  ++  M+    P
Sbjct: 411 WMITHGCH-----------------PNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCP 453

Query: 512 PNKTKYK 518
           PN   + 
Sbjct: 454 PNTVTFN 460



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 171/395 (43%), Gaps = 22/395 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YNA++N        ++  QL D+M   G  P+V++Y  +I   + A    L + V
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 116 LERILEMGITLCMTTFQSLVAAY-VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           L ++   G +  + TF SL+  + +  G  E  +   + +REG          L     S
Sbjct: 304 LAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCS 363

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             + GD      VF ++  N                PN R Y+ L+ GY   G +     
Sbjct: 364 KRSLGDAVS---VFNQMEINGC-------------CPNVRTYSALIDGYAKAGDLDGASE 407

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M        HP+ V YT +V  L +    ++A  ++  M     P N +T+N  +K
Sbjct: 408 VWNWMITH---GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIK 464

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C   ++D A ++  +M +     P+  +YN L+D  +       A     +M  RGI 
Sbjct: 465 GLCGSGRVDWAIKVFDQMGNSGCF-PNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++Y T++  +  +     A ++  +M+     K D +  N++++ YC+ G V  A +
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRG-TKPDAITVNIVIDAYCKQGKVNIAIQ 582

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           +++R+    ++P++  Y SL +GI       EA++
Sbjct: 583 LMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIV 617



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 180/409 (44%), Gaps = 37/409 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RASRKHL 111
           KP    YN +L+A  +  + +    ++  M + G +P+V TYN+++K LC   R    H 
Sbjct: 143 KPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHK 202

Query: 112 LVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
           L      ++EM    C     ++ +L+++    G ++ A  +  +          +I  +
Sbjct: 203 L------LVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGV 256

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
             ++Y+ E         E F+ L            ++ K   PN   YTT++    + G 
Sbjct: 257 -CKEYTFE---------EAFQLL----------DEMMNKGIDPNVISYTTIINALSDAGN 296

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V  ++ +L  M  +      P+  T+T+++      G    A      M R GV  N + 
Sbjct: 297 VELSLAVLAKMFAR---GCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVA 353

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN L+ G C +  +  A  +  +M  +    P+V +Y+ LIDG+    D  GA   +N M
Sbjct: 354 YNALMHGLCSKRSLGDAVSVFNQMEINGCC-PNVRTYSALIDGYAKAGDLDGASEVWNWM 412

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
              G  P  ++YT ++     +S    A  + + M +      + V +N  ++G C  G 
Sbjct: 413 ITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENM-QVENCPPNTVTFNTFIKGLCGSGR 471

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           V+ A ++ ++M  +G +PN  TY  L + +   R+ GEA  L K+++ R
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHR 520



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 193/452 (42%), Gaps = 47/452 (10%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           G  ++ L+ F +M +F  KP V  YN ++      +R  ++  +   + + G+   + T+
Sbjct: 125 GSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTY 184

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
             L+ A                       +CK  R         E      D DEV    
Sbjct: 185 NILLKA-----------------------LCKNNRVDGAHKLLVEMSSKGCDPDEVSYTT 221

Query: 192 LPNS---INPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
           L +S   +    E   L  +F P+  +Y  L+ G   E    +  ++L  M  +      
Sbjct: 222 LISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNK---GID 278

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+ ++YTT+++AL  AG+++ +  VLA+M   G   N  T+  L+KG+  +    +A + 
Sbjct: 279 PNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDF 338

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
              M  +  + P+VV+YN L+ G         A++ FN+M   G  P   +Y+ L+  +A
Sbjct: 339 WDRMIREGVV-PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYA 397

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +     A++V++ M+       ++VA+  +V+  CR  +  +A  +IE M+     PN 
Sbjct: 398 KAGDLDGASEVWNWMITHG-CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNT 456

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            T+ +   G+  + +   A+ ++ ++             +S   P      ELLD+L   
Sbjct: 457 VTFNTFIKGLCGSGRVDWAIKVFDQM------------GNSGCFPNTTTYNELLDSL--- 501

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            ++   F +A  +V  ME  GI  N   Y  I
Sbjct: 502 -LKDRRFGEAFGLVKDMEHRGIELNLVTYNTI 532



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 146/361 (40%), Gaps = 48/361 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G +P+V A++ ++  L +    G   SV            F+  +I +   P+   
Sbjct: 342 MIREGVVPNVVAYNALMHGLCSKRSLGDAVSV------------FNQMEI-NGCCPNVRT 388

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A+++  A  G      ++++ M   G  P+V+ Y  M+ +  R S  +    ++E + 
Sbjct: 389 YSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQ 448

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
                    TF + +    G G ++ A  +   M                      N G 
Sbjct: 449 VENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMG---------------------NSGC 487

Query: 180 --DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP-----NSRIYTTLMKGYMNEGRVSDT 232
             +    +E+ + LL +      E   L K         N   Y T++ GY   G + + 
Sbjct: 488 FPNTTTYNELLDSLLKD--RRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEA 545

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +LG M  +    + PD +T   V+ A  K G ++ A Q++  ++      + I Y  L
Sbjct: 546 LELLGKMVVR---GTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSL 602

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C  + +++A   LR M  +  I P+V ++N+L+         +GA+ F + +   G
Sbjct: 603 ISGICTHIGVEEAIVYLRRMLSEG-ISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSG 661

Query: 353 I 353
            
Sbjct: 662 F 662


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 182/448 (40%), Gaps = 71/448 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P V  ++ +++ L   G          F      +RK  +  +     P    
Sbjct: 166 MLAKGICPDVATFNILLNALCERGK---------FKNAGFLLRKMEESGVY----PTAVT 212

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +LN     G+ K   QL D M   G   DV TYNV I    R SR      +L+R+ 
Sbjct: 213 YNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMR 272

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              +     T+ +L++ +V  G +E+A               K+  E+ L +        
Sbjct: 273 RNMVYPNEITYNTLISGFVREGKIEVAT--------------KVFDEMSLFN-------- 310

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                     LLPNSI                   Y TL+ G+   G + + +R++  M 
Sbjct: 311 ----------LLPNSIT------------------YNTLIAGHCTTGNIGEALRLMDVM- 341

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               +   P+ VTY  +++ L K         +L  M   GV  + I+Y  ++ G C+  
Sbjct: 342 --VSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNG 399

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +++A +LL +M     + PDVV++++LI+GF  +     A     +M   G+ P  I Y
Sbjct: 400 MLEEAVQLLDDML-KVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILY 458

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           +TL+  +      K A   +  M     V  D    N+LV  +CR G +EEA+  +  M 
Sbjct: 459 STLIYNYCKMGYLKEALNAYAVMNHSGHV-ADHFTCNVLVATFCRYGKLEEAEYFMNHMS 517

Query: 421 ENGFYPNVATYGSLANGISLARKPGEAL 448
             G  PN  T+  + NG       G+AL
Sbjct: 518 RMGLDPNSVTFDCIINGYG---NSGDAL 542



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 163/381 (42%), Gaps = 57/381 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
            P     N VL +     K   F   F  M   G  PDV T+N+++  LC R   K+   
Sbjct: 137 NPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNA-G 195

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F+L ++ E G+     T+ +L+  Y   G  + A  ++  M                   
Sbjct: 196 FLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCM------------------- 236

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           +S+  G D     VF   + N    S                     KGY+         
Sbjct: 237 ASKGIGVDVCTYNVF---IDNLCRDSRSA------------------KGYL--------- 266

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  MRR   N  +P+ +TY T++S  V+ G ++ A +V  EM+   +  N ITYN L+
Sbjct: 267 -LLKRMRR---NMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLI 322

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C    I +A  L+  M     + P+ V+Y  L++G     +     +    MR  G+
Sbjct: 323 AGHCTTGNIGEALRLMDVMVSHG-LRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGV 381

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             + ISYT ++     +   + A ++ D+ML+   V  D+V +++L+ G+ R+G +  AK
Sbjct: 382 RVSHISYTAMIDGLCKNGMLEEAVQLLDDMLK-VSVNPDVVTFSVLINGFFRVGKINNAK 440

Query: 414 RIIERMKENGFYPNVATYGSL 434
            I+ +M + G  PN   Y +L
Sbjct: 441 EIMCKMYKTGLVPNGILYSTL 461



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/472 (21%), Positives = 205/472 (43%), Gaps = 36/472 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN +++     GK +   ++FD+M  F   P+ +TYN +I            + +
Sbjct: 278 PNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRL 337

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++ ++  G+     T+ +L+       +  +  +I++ MR G   V  I     ++    
Sbjct: 338 MDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCK 397

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  ++  ++ + +L  S+NP                 ++ L+ G+   G++++   +
Sbjct: 398 --NGMLEEAVQLLDDMLKVSVNPDVVT-------------FSVLINGFFRVGKINNAKEI 442

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M +       P+ + Y+T++    K G +  A    A M   G  A+  T N+L+  
Sbjct: 443 MCKMYKT---GLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVAT 499

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  ++++A+  +  M+    ++P+ V+++ +I+G+    D+  A + F++M + G  P
Sbjct: 500 FCRYGKLEEAEYFMNHMS-RMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFP 558

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           +  +Y  L+K   +      A K F  +   P   VD V +N  +   CR G + +A  +
Sbjct: 559 SLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNA-VDNVIFNTKLTSTCRSGNLSDAIAL 617

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           I  M  N F P+  TY +L  G+    K   ALLL  +  E+                 L
Sbjct: 618 INEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEK---------------GLL 662

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
            P+  +  +L D  ++    R AL I   M    + P+   +  I ++ +SR
Sbjct: 663 SPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVI-IDQYSR 713



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 131/295 (44%), Gaps = 29/295 (9%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  T+  +++AL + G    A  +L +M   GV    +TYN LL  YC++ +   A +L
Sbjct: 173 PDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQL 232

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           +  MA    I  DV +YN+ ID       SA        MR   + P +I+Y TL+  F 
Sbjct: 233 IDCMASKG-IGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFV 291

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              + ++A KVFDEM     +  + + +N L+ G+C  G + EA R+++ M  +G  PN 
Sbjct: 292 REGKIEVATKVFDEM-SLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNE 350

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKER--------------------CE--VKKEGVN 466
            TYG+L NG+    + G    +   I ER                    C+  + +E V 
Sbjct: 351 VTYGALLNGLYKNAEFG----MVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQ 406

Query: 467 -ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             D  L   + PD      L +   R      A EI+  M + G+ PN   Y  +
Sbjct: 407 LLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTL 461



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 140/340 (41%), Gaps = 54/340 (15%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L K   P+   +  L+      G+  +   +L   R+ E++  +P  VTY T+++   K
Sbjct: 166 MLAKGICPDVATFNILLNALCERGKFKNAGFLL---RKMEESGVYPTAVTYNTLLNWYCK 222

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G    A Q++  M   G+  +  TYN+ +   C+  +  K   LL+ M  +  + P+ +
Sbjct: 223 KGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNM-VYPNEI 281

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN LI GF+       A   F+EM    + P  I+Y TL+     +     A ++ D M
Sbjct: 282 TYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVM 341

Query: 384 ----------------------------------LRDPRVKVDIVAWNMLVEGYCRMGLV 409
                                             +R   V+V  +++  +++G C+ G++
Sbjct: 342 VSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGML 401

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           EEA ++++ M +    P+V T+  L NG     K   A    KEI   C++ K G     
Sbjct: 402 EEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNA----KEI--MCKMYKTG----- 450

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
                L P+  L   L     +  + ++AL   A M   G
Sbjct: 451 -----LVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSG 485



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/483 (20%), Positives = 196/483 (40%), Gaps = 40/483 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
            PD   ++ ++N    +GK     ++  +M++ G  P+ + Y+ +I   C     K  L 
Sbjct: 417 NPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALN 476

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
                +   G      T   LVA +  +G LE AE  +  M     D   +  +  +  Y
Sbjct: 477 -AYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGY 535

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              N GD      VF+K+  NS          P  F      Y  L+KG    G +++ +
Sbjct: 536 G--NSGDALKAFSVFDKM--NSFGH------FPSLFT-----YGGLLKGLCIGGHINEAL 580

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +    +R   +     D+V + T +++  ++G++  A  ++ EM       +  TY  L+
Sbjct: 581 KFFHRLRCIPNAV---DNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLI 637

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C++ +I  A  L  +  +   + P+   Y  L+DG +    +  AL  F EM  + +
Sbjct: 638 AGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDV 697

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  +++  ++  ++   +    N +   M +   +  ++  +N+L+ GY +   +    
Sbjct: 698 EPDTVAFNVIIDQYSRKGKTSKVNDILSTM-KSKNLCFNLATYNILLHGYAKRHAMARCF 756

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEAL-------------------LLWKEI 454
            + + M  +GF P+  ++ SL  G   ++    A+                   +L  + 
Sbjct: 757 MLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKF 816

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
            ER E+KK            + P+ +  +AL +  +R + F KA  ++  + E G  P  
Sbjct: 817 CERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTN 876

Query: 515 TKY 517
            +Y
Sbjct: 877 KQY 879



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 106/523 (20%), Positives = 200/523 (38%), Gaps = 102/523 (19%)

Query: 5    GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
            G+ P +  +  ++  L   G     E++K F     R+R    P+ V     D   +N  
Sbjct: 555  GHFPSLFTYGGLLKGLCIGGHIN--EALKFF----HRLR--CIPNAV-----DNVIFNTK 601

Query: 65   LNACANLGKPKKFLQLFDQMHEFGAKPDVLTY-NVMIKLCARASRKHLLVFVLERILEMG 123
            L +    G     + L ++M      PD  TY N++  LC +      L+   + I +  
Sbjct: 602  LTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGL 661

Query: 124  ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
            ++     + SLV   +  G    A  I + M     +   +   + ++ YS + +    +
Sbjct: 662  LSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVN 721

Query: 184  DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
            D                   +  K    N   Y  L+ GY     ++    +   M R  
Sbjct: 722  D---------------ILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRH- 765

Query: 244  DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                 PD  ++ +++    ++ S D A ++L  +T  G   +R T+N+L+  +C++ ++ 
Sbjct: 766  --GFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMK 823

Query: 304  KAKELLREMADDAKIEPDVVSYNILIDGFILIDDS------------------------- 338
            KA EL+++M +   + P+V +YN L +G I   D                          
Sbjct: 824  KAFELVKQM-NQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITL 882

Query: 339  ----------AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR--- 385
                       GA+   +EM+  GI+   ++ + +++  A S + + A  V D ML    
Sbjct: 883  INGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQI 942

Query: 386  -------------------------------DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                                              VK+D+VA+N+L+ G C  G +E A +
Sbjct: 943  IPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFK 1002

Query: 415  IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            + E MK+   +PN + Y  L +         E+  L ++I++R
Sbjct: 1003 LYEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLLRDIQDR 1045



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 129/319 (40%), Gaps = 41/319 (12%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M+R G+LP   +W +++     S         K FDV +K +R  +    +     D   
Sbjct: 762  MIRHGFLPDKFSWHSLILGYCQS---------KSFDVAIKILRWIT----LEGHVIDRFT 808

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            +N ++       + KK  +L  QM++F   P+V TYN +     R S  H    VL+ +L
Sbjct: 809  FNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLL 868

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-----EGRRDVCKIIRELDLEDYSS 175
            E G       + +L+      G+++ A  +   M+          +  I+R L       
Sbjct: 869  ESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGL------- 921

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             N    ++   V + +L   I P+                +TTLM  Y  E  V+  + +
Sbjct: 922  ANSKKIENAIWVLDLMLEMQIIPTVAT-------------FTTLMHVYCKEANVAKALEL 968

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               M   E      D V Y  ++S L   G ++ A ++  EM +  +  N   Y +L+  
Sbjct: 969  RSIM---EHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDS 1025

Query: 296  YCQQLQIDKAKELLREMAD 314
            +C      ++++LLR++ D
Sbjct: 1026 FCAGNYQIESEKLLRDIQD 1044


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/539 (23%), Positives = 241/539 (44%), Gaps = 55/539 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+  +++T+++ L  SG    +E+  L   +V R   F   DIV+ +      
Sbjct: 382 MYEMGLDPNHVSYATIINSLFKSGR--VMEAFNLQSQMVVRGISF---DIVTCT------ 430

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              V++    +GK K+  ++F+ + +    P+ +TY+ ++    +  +  L   VL+++ 
Sbjct: 431 --TVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKME 488

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +  +   + TF S++  Y   G L  A  +++ M +       I+  + ++ Y    E D
Sbjct: 489 KEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQD 548

Query: 181 DDDD-------------DEVFEKLLPN--SINPSSEP-----PLLPKTFAPNSRIYTTLM 220
             DD             + +F+ LL N   +    E       +  K   P+   Y +L+
Sbjct: 549 VADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLI 608

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY  EG   + +  L  ++  ++     D V Y  ++  L++ G  D  R V + M  +
Sbjct: 609 DGYFKEG---NQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYD-PRYVCSRMIEL 664

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  + ITYN ++  YC + + + A ++L EM     I P+ V+YNILI G         
Sbjct: 665 GLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYG-IMPNAVTYNILIGGLCKTGAVEK 723

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD--EMLRDPRVKVDIVAWNM 398
           A +  +EM      PT I++  L+KA++ S +   A+K+    E L    +++ +  +N 
Sbjct: 724 AESALDEMLVMEFVPTPITHKFLVKAYSRSEK---ADKILQIHEKLVASGLELSLTVYNT 780

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           L+  +CR+G+  +AK +++ M + G   ++ TY +L  G        +AL      K   
Sbjct: 781 LITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKAL------KTYS 834

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           ++  +G+       P +     LL  L++  +      +  ++V+ M E G+ PN   Y
Sbjct: 835 QMFVDGI------APNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATY 887



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 204/462 (44%), Gaps = 61/462 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G +P V + + +V  L   GD          D+ +  +R     DI      D   
Sbjct: 120 MLFCGVVPDVFSVNVLVHSLCKVGD---------LDLALGYLRNNDVVDI------DNVT 164

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+      G   +   L  +M + G   D +T N+++K   R        +V+  ++
Sbjct: 165 YNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLV 224

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
           + G+T  +    +L+  Y   G +  A  +++     R DV     ++D+  Y++     
Sbjct: 225 DGGVTKDVIGLNTLIDGYCEAGLMSQATELIE--NSWRSDV-----KIDIVTYNTLLKAF 277

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              GD    + +F ++L                             G+  +    D ++ 
Sbjct: 278 CKTGDLTRAESLFNEIL-----------------------------GFWKD---EDRLKN 305

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              + + E     P  VTYTT+++A  K   ++ +  +  +M   G+  + +T + +L G
Sbjct: 306 NDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYG 365

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  ++ +A  L REM  +  ++P+ VSY  +I+          A    ++M  RGI+ 
Sbjct: 366 FCRHGKLTEAAVLFREMY-EMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISF 424

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++ TT+M       + K A +VF+ +L+   +  + V ++ L++GYC++G +E A+ +
Sbjct: 425 DIVTCTTVMDGLFKVGKTKEAEEVFETILK-LNLAPNCVTYSALLDGYCKLGKMELAELV 483

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +++M++    PNV T+ S+ NG +      +A+ + +E+ +R
Sbjct: 484 LQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQR 525



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 183/429 (42%), Gaps = 35/429 (8%)

Query: 30  ESVKLFDVVVKRVRKFSDPD----IVSD--SK---PDTAAYNAVLNACANLGKPKKFLQL 80
           ES  +FD+++  +++    D    ++ D  SK   PD   Y ++++     G     L +
Sbjct: 564 ESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSI 623

Query: 81  FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140
             +M E   + DV+ YN +IK   R   K+   +V  R++E+G+     T+ +++  Y  
Sbjct: 624 VQEMKEKNIRFDVVAYNALIKGLLRLG-KYDPRYVCSRMIELGLAPDCITYNTIINTYCI 682

Query: 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS 200
            G  E A  I+  M+        +   + +         +  +               S+
Sbjct: 683 KGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAE---------------SA 727

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
              +L   F P    +  L+K Y    R     ++L    +   +        Y T+++ 
Sbjct: 728 LDEMLVMEFVPTPITHKFLVKAY---SRSEKADKILQIHEKLVASGLELSLTVYNTLITV 784

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
             + G   +A+ VL EM + G+ A+ +TYN L++GYC    ++KA +   +M  D  I P
Sbjct: 785 FCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDG-IAP 843

Query: 321 DVVSYNILIDGF----ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           ++ +YN L+ G     ++ +         +EM  RG+ P   +Y  L+  +      K  
Sbjct: 844 NITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKT 903

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +  EM+    V   +  +N+L+  Y + G + EA+ ++  +   G  PN  TY  L  
Sbjct: 904 IILHIEMITKGFVPT-LKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTC 962

Query: 437 G-ISLARKP 444
           G ++L+ +P
Sbjct: 963 GWLNLSYEP 971



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 167/412 (40%), Gaps = 83/412 (20%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++P  F+ N  +++          +V D    LG +R   ++    D+VTY TV+    +
Sbjct: 125 VVPDVFSVNVLVHSLC--------KVGDLDLALGYLR--NNDVVDIDNVTYNTVIWGFCQ 174

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD-------- 315
            G +D+   +L+EM + G+  + IT NIL+KGYC+   +  A+ ++  + D         
Sbjct: 175 KGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIG 234

Query: 316 --------------------------AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
                                     + ++ D+V+YN L+  F    D   A + FNE+ 
Sbjct: 235 LNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEIL 294

Query: 350 A-------------------RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                               + + PT ++YTTL+ A+      + ++ ++ +M+ +  + 
Sbjct: 295 GFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNG-IM 353

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+V  + ++ G+CR G + EA  +   M E G  PN  +Y ++ N +  + +  EA  L
Sbjct: 354 PDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNL 413

Query: 451 WKEIKER--------CEVKKEGVNA-----------DSDLPPPLKPDEELLDALADICVR 491
             ++  R        C    +G+             ++ L   L P+     AL D   +
Sbjct: 414 QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCK 473

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRR 543
                 A  ++  ME+  +PPN   +  I      +   SK     R+  +R
Sbjct: 474 LGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQR 525



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 178/422 (42%), Gaps = 34/422 (8%)

Query: 11  KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP-----DTAAYNAVL 65
           +A S ++   +   D   V    L D   K   + +   IV + K      D  AYNA++
Sbjct: 584 EARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALI 643

Query: 66  NACANLGK--PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
                LGK  P+    +  +M E G  PD +TYN +I       +    + +L  +   G
Sbjct: 644 KGLLRLGKYDPR---YVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYG 700

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I     T+  L+      G +E AE+ +  M         I  +  ++ YS   + D   
Sbjct: 701 IMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKIL 760

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             ++ EKL+ + +  S               +Y TL+  +   G       +L  M ++ 
Sbjct: 761 --QIHEKLVASGLELSLT-------------VYNTLITVFCRLGMTRKAKVVLDEMVKRG 805

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----Q 299
            +A   D VTY  ++        +++A +  ++M   G+  N  TYN LL G       +
Sbjct: 806 ISA---DLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLME 862

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +++ ++L+ EM ++  + P+  +Y+IL+ G+  + +    +    EM  +G  PT  +
Sbjct: 863 EMMEETEKLVSEM-NERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKT 921

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+  +A S +   A ++ +++L   R+  +   +++L  G+  +    E  R ++R 
Sbjct: 922 YNVLISDYAKSGKMIEARELLNDLLTKGRIP-NSFTYDILTCGWLNLSYEPEIDRSLKRS 980

Query: 420 KE 421
            E
Sbjct: 981 YE 982


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/484 (22%), Positives = 219/484 (45%), Gaps = 54/484 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIV--------- 51
           M  +G  P + ++ T+++ LA SG+   +++V+LFD +  R     +PD++         
Sbjct: 175 MFENGLNPDILSYGTLINALAKSGN--LLDAVELFDEMSVRG---VNPDVMCYNILIDGF 229

Query: 52  -------------------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
                              S   P    YN ++N    LGK  + ++++++M +    PD
Sbjct: 230 LRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPD 289

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           + T++ MI   ++A   +    V + ++E G++  + T+ ++++     G L     +  
Sbjct: 290 LFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWN 349

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
            M   + + C I+       Y+   +G  D+      K +  +I       L  +    +
Sbjct: 350 VM--SKNNCCNIV------SYNMLIQGLLDN------KKVEQAI--CYWQLLHERGLKAD 393

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           S  Y  L+ G    G ++  +R+L      E+  +  D   Y+++V  L K G +++A +
Sbjct: 394 STTYGLLINGLCKNGYLNKALRIL---EEAENEGADLDTFAYSSMVHGLCKKGMLEQAVE 450

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           ++ +M +     N   +N L+ GY +  ++++A  +LREM       P VVSYN +I+G 
Sbjct: 451 LIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSK-DCAPTVVSYNTIINGL 509

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
              +  + A     EM   G+ P  I+Y+ L+       +  +A  ++ + + + R+K D
Sbjct: 510 CKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCI-NKRLKPD 568

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +   N+++ G C    V+ A  I  +M++    P++ T+ ++  G+  A    EAL +W 
Sbjct: 569 LQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWD 628

Query: 453 EIKE 456
            I E
Sbjct: 629 RILE 632



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 209/464 (45%), Gaps = 36/464 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
             P   ++N++LNA     + ++    F      G  P++ TYN++IK+  +  +     
Sbjct: 110 CNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGK 169

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L  + E G+   + ++ +L+ A    G+L  A  +   M    R V   +   ++   
Sbjct: 170 GLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEM--SVRGVNPDVMCYNILID 227

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               +GD    +E++++LL  S            +  P+   Y  ++ G    G++ +++
Sbjct: 228 GFLRKGDFVKANEIWKRLLTES------------SVYPSVETYNIMINGLCKLGKLDESM 275

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            M   M++ E +   PD  T+++++  L KAG+ + A +V  EM   G+  +  TYN +L
Sbjct: 276 EMWNRMKKNEKS---PDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAML 332

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G  +  +++K  EL   M+ +     ++VSYN+LI G +       A+ ++  +  RG+
Sbjct: 333 SGLFRTGKLNKCFELWNVMSKNNCC--NIVSYNMLIQGLLDNKKVEQAICYWQLLHERGL 390

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
                +Y  L+     +     A ++ +E   +    +D  A++ +V G C+ G++E+A 
Sbjct: 391 KADSTTYGLLINGLCKNGYLNKALRILEEA-ENEGADLDTFAYSSMVHGLCKKGMLEQAV 449

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            +I +MK+N    N   + SL NG   A K  EA+ + +E+K +            D  P
Sbjct: 450 ELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSK------------DCAP 497

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            +     +++ L     +A  F  A   +  M E G+ P+   Y
Sbjct: 498 TVVSYNTIINGLC----KAERFSDAYLSLKEMLEEGLKPDMITY 537



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 186/438 (42%), Gaps = 69/438 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ SG  P V+ ++ ++S L  +G     +  +L++V+ K            ++  +  +
Sbjct: 316 MIESGLSPDVRTYNAMLSGLFRTGKLN--KCFELWNVMSK------------NNCCNIVS 361

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++    +  K ++ +  +  +HE G K D  TY ++I    +    +  + +LE   
Sbjct: 362 YNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAE 421

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G  L    + S+V      G LE A  ++  M++ RR +                   
Sbjct: 422 NEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKL------------------- 462

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                          NS ++ +L+ GY+   ++ + + +L  M+
Sbjct: 463 -------------------------------NSHVFNSLINGYVRAFKLEEAISVLREMK 491

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            ++     P  V+Y T+++ L KA     A   L EM   G+  + ITY++L+ G C+  
Sbjct: 492 SKD---CAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGE 548

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D A  L  +  +  +++PD+  +NI+I G         AL  F +MR     P  +++
Sbjct: 549 KVDMALNLWHQCINK-RLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTH 607

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            T+M+    +     A K++D +L +  ++ DI+++N+  +G C    V +A   +    
Sbjct: 608 NTIMEGLYKAGDCVEALKIWDRIL-EAGLQPDIISYNITFKGLCSCARVSDAIEFLYDAL 666

Query: 421 ENGFYPNVATYGSLANGI 438
           + G  PN  T+  L   +
Sbjct: 667 DRGILPNAPTWNVLVRAV 684



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 158/353 (44%), Gaps = 24/353 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           +PN + Y  L+K    + +      +L  M    +N  +PD ++Y T+++AL K+G++  
Sbjct: 146 SPNLQTYNILIKISCKKRQFEKGKGLLTWMF---ENGLNPDILSYGTLINALAKSGNLLD 202

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A ++  EM+  GV  + + YNIL+ G+ ++    KA E+ + +  ++ + P V +YNI+I
Sbjct: 203 AVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMI 262

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G   +     ++  +N M+    +P   ++++++   + +     A KVF EM+ +  +
Sbjct: 263 NGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMI-ESGL 321

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D+  +N ++ G  R G + +   +   M +N    N+ +Y  L  G+   +K  +A+ 
Sbjct: 322 SPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNN-CCNIVSYNMLIQGLLDNKKVEQAIC 380

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
            W+ + ER                 LK D      L +   +  +  KAL I+   E  G
Sbjct: 381 YWQLLHER----------------GLKADSTTYGLLINGLCKNGYLNKALRILEEAENEG 424

Query: 510 IPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSY 562
              +   Y  +   +  +    +      Q ++  RK  +  F     L N Y
Sbjct: 425 ADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFN---SLINGY 474



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/471 (20%), Positives = 199/471 (42%), Gaps = 48/471 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  ++NA A  G     ++LFD+M   G  PDV+ YN++I    R         +
Sbjct: 182 PDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEI 241

Query: 116 LERIL-EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            +R+L E  +   + T+  ++      G L+ +  +   M++  +         DL  +S
Sbjct: 242 WKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSP-------DLFTFS 294

Query: 175 S-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           S        G+ +  ++VF++++ + +             +P+ R Y  ++ G    G++
Sbjct: 295 SMIHGLSKAGNFNAAEKVFQEMIESGL-------------SPDVRTYNAMLSGLFRTGKL 341

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           +    +   M +     +  + V+Y  ++  L+    +++A      +   G+ A+  TY
Sbjct: 342 NKCFELWNVMSKN----NCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTY 397

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
            +L+ G C+   ++KA  +L E A++   + D  +Y+ ++ G         A+   ++M+
Sbjct: 398 GLLINGLCKNGYLNKALRILEE-AENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMK 456

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
                     + +L+  +  + + + A  V  EM +       +V++N ++ G C+    
Sbjct: 457 KNRRKLNSHVFNSLINGYVRAFKLEEAISVLREM-KSKDCAPTVVSYNTIINGLCKAERF 515

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            +A   ++ M E G  P++ TY  L +G+    K   AL LW +    C  K+       
Sbjct: 516 SDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQ----CINKR------- 564

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                LKPD ++ + +      A     ALEI   M +    P+   +  I
Sbjct: 565 -----LKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTI 610



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 55/265 (20%)

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +K Y +    D+A  L + M D     P + S+N +++ FI  +    A  FF   +  G
Sbjct: 85  IKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAG 144

Query: 353 IAPTK-----------------------------------ISYTTLMKAFALSSQPKLAN 377
           ++P                                     +SY TL+ A A S     A 
Sbjct: 145 MSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAV 204

Query: 378 KVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER-MKENGFYPNVATYGSLA 435
           ++FDEM +R   V  D++ +N+L++G+ R G   +A  I +R + E+  YP+V TY  + 
Sbjct: 205 ELFDEMSVRG--VNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMI 262

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           NG+    K  E++ +W  +K+            ++  P L     ++  L+    +A  F
Sbjct: 263 NGLCKLGKLDESMEMWNRMKK------------NEKSPDLFTFSSMIHGLS----KAGNF 306

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
             A ++   M E G+ P+   Y  +
Sbjct: 307 NAAEKVFQEMIESGLSPDVRTYNAM 331



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   +N ++      G   + L+++D++ E G +PD+++YN+  K LC+ A     + F
Sbjct: 602 PDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEF 661

Query: 115 VLERILEMGITLCMTTFQSLVAAYV 139
           + +  L+ GI     T+  LV A V
Sbjct: 662 LYDA-LDRGILPNAPTWNVLVRAVV 685


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 182/396 (45%), Gaps = 37/396 (9%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+ AY   G+   AE ++  + +       I     +E Y     G  ++ + +F +
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYG--RGGKCNNAEAIFRR 199

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +       SS P        P++  Y  ++K ++   +  +   +   +  ++ +   PD
Sbjct: 200 M------QSSGPE-------PSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPD 246

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
              Y  ++    KAG+ D+AR+V + M   GVP + +TYN L+       ++ K  + ++
Sbjct: 247 QKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFETNYKEVSKIYDQMQ 306

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
                + I+PDVVSY +LI  +        AL+ F EM   G+ PT  +Y  L+ AFA+S
Sbjct: 307 R----SGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
              + A  VF  M RD R+  D+ ++  ++  Y     +E A++  +R+K +GF PN+ T
Sbjct: 363 GMVEQAKTVFKSMRRD-RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           YG++  G + A    + +    E+ E+  +              +K ++ +L  + D   
Sbjct: 422 YGTMIKGYAKANDVEKMM----EVYEKMRL------------SGIKANQTILTTIMDASG 465

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
           R   F  AL     ME  G+PP++ K K + + ++S
Sbjct: 466 RCKDFGSALGWYKEMESCGVPPDQ-KAKNVLLSLYS 500



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 153/345 (44%), Gaps = 24/345 (6%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++ A   LG      ++   + + G+ P+V++Y  +++   R  + +    +  R+   G
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSENEGDDD 182
                 T+Q ++  +V     + AE + + + + ++   K  +++  +  Y  +  G+ D
Sbjct: 205 PEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYD 264

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRR 241
              +VF  ++   +              P S + Y +LM    N   VS   ++   M+R
Sbjct: 265 KARKVFSSMVGKGV--------------PQSTVTYNSLMSFETNYKEVS---KIYDQMQR 307

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
              +   PD V+Y  ++ A  +A   + A  V  EM   GV      YNILL  +     
Sbjct: 308 ---SGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGM 364

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +++AK + + M  D +I PD+ SY  ++  ++   D  GA  FF  ++  G  P  ++Y 
Sbjct: 365 VEQAKTVFKSMRRD-RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYG 423

Query: 362 TLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCR 405
           T++K +A ++  +   +V+++M L   +    I+   M   G C+
Sbjct: 424 TMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCK 468



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 31/256 (12%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T  YN++++   N    K+  +++DQM   G +PDV++Y ++IK   RA R+   + V E
Sbjct: 282 TVTYNSLMSFETNY---KEVSKIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFE 338

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE- 176
            +L+ G+      +  L+ A+   G +E A+T+ ++MR  R     I    DL  Y++  
Sbjct: 339 EMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDR-----IFP--DLWSYTTML 391

Query: 177 ----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               N  D +  ++ F+++  +              F PN   Y T++KGY    + +D 
Sbjct: 392 SAYVNASDMEGAEKFFKRIKVDG-------------FEPNIVTYGTMIKGY---AKANDV 435

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +M+    +   +    +    TT++ A  +      A     EM   GVP ++   N+L
Sbjct: 436 EKMMEVYEKMRLSGIKANQTILTTIMDASGRCKDFGSALGWYKEMESCGVPPDQKAKNVL 495

Query: 293 LKGYCQQLQIDKAKEL 308
           L  Y  Q ++D+AKEL
Sbjct: 496 LSLYSTQDELDEAKEL 511



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G  P  KA++ ++   A SG    VE  K     ++R R F          PD  +
Sbjct: 340 MLDAGVRPTHKAYNILLDAFAISG---MVEQAKTVFKSMRRDRIF----------PDLWS 386

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+A  N    +   + F ++   G +P+++TY  MIK  A+A+    ++ V E++ 
Sbjct: 387 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMR 446

Query: 121 EMGITLCMTTFQSLVAA 137
             GI    T   +++ A
Sbjct: 447 LSGIKANQTILTTIMDA 463


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 173/381 (45%), Gaps = 37/381 (9%)

Query: 141 FGDLEIAETIVQ-AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
            G +E+A+ + + A+ EG  +       L +  Y     G  D+  +VFE +  + + P+
Sbjct: 198 LGQVELAKNVFETALNEGYGNTVYAFSAL-ISAYG--RSGYCDEAIKVFETMKSSGLKPN 254

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                        + +     KG ++  R ++   +   M R   N   PD +T+ ++++
Sbjct: 255 ---------LVTYNAVIDACGKGGVDFNRAAE---IFDEMLR---NGVQPDRITFNSLLA 299

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
              + G  + AR + +EM   G+  +  TYN LL   C+  Q+D A +++ EM     I 
Sbjct: 300 VCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRK-HIM 358

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+VV+Y+ +IDG+        AL  FNEM+   I   ++SY TL+  +A   + + A  V
Sbjct: 359 PNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNV 418

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             EM     +K D V +N L+ GY + G  EE KR+ E MK    +PN+ TY +L +  S
Sbjct: 419 CKEM-ESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYS 477

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
                 EA+ +++E       KK G          LK D  L  AL D   +      A+
Sbjct: 478 KGGLYQEAMEVFREF------KKAG----------LKADVVLYSALIDALCKNGLVESAV 521

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
             +  M + GI PN   Y  I
Sbjct: 522 SFLDEMTKEGIRPNVVTYNSI 542



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 159/404 (39%), Gaps = 101/404 (25%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L  GY   V A+S ++S    SG     E++K+F+ +             S  KP+   Y
Sbjct: 212 LNEGYGNTVYAFSALISAYGRSGYCD--EAIKVFETMKS-----------SGLKPNLVTY 258

Query: 62  NAVLNACANLGKP-KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           NAV++AC   G    +  ++FD+M   G +PD +T+N ++ +C R         +   +L
Sbjct: 259 NAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEML 318

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+ +L+ A    G +++A  I+                             
Sbjct: 319 YRGIEQDIFTYNTLLDAVCKGGQMDLAFQIM----------------------------- 349

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                              SE P   K   PN   Y+T++ GY   GR+ + + +   M+
Sbjct: 350 -------------------SEMP--RKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK 388

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                    D V+Y T++S   K G  + A  V  EM   G+  + +TYN LL GY +Q 
Sbjct: 389 FASIGL---DRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQG 445

Query: 301 QIDKAKELLREMADD----------------------------------AKIEPDVVSYN 326
           + ++ K +  EM  +                                  A ++ DVV Y+
Sbjct: 446 KYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYS 505

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
            LID          A++F +EM   GI P  ++Y +++ AF  S
Sbjct: 506 ALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRS 549



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 155/372 (41%), Gaps = 52/372 (13%)

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           + MI +  R  +  L   V E  L  G    +  F +L++AY   G  + A  + + M+ 
Sbjct: 189 SAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS 248

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
                  ++    + D   +   D +   E+F+++L N + P               RI 
Sbjct: 249 SGLKP-NLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPD--------------RIT 293

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
              +      G + +  R L             D  TY T++ A+ K G MD A Q+++E
Sbjct: 294 FNSLLAVCGRGGLWEAARNL--FSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSE 351

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA----------------------- 313
           M R  +  N +TY+ ++ GY +  ++D+A  L  EM                        
Sbjct: 352 MPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGR 411

Query: 314 -----------DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
                      + + I+ D V+YN L+ G+            F EM+A  I P  ++Y+T
Sbjct: 412 FEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYST 471

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  ++     + A +VF E  +   +K D+V ++ L++  C+ GLVE A   ++ M + 
Sbjct: 472 LIDVYSKGGLYQEAMEVFRE-FKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKE 530

Query: 423 GFYPNVATYGSL 434
           G  PNV TY S+
Sbjct: 531 GIRPNVVTYNSI 542



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/462 (19%), Positives = 190/462 (41%), Gaps = 52/462 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P++  ++ V+      G D              R  +  D  + +  +PD   
Sbjct: 246 MKSSGLKPNLVTYNAVIDACGKGGVD------------FNRAAEIFDEMLRNGVQPDRIT 293

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N++L  C   G  +    LF +M   G + D+ TYN ++    +  +  L   ++  + 
Sbjct: 294 FNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMP 353

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              I   + T+ +++  Y   G L+ A  +   M+     + ++     L  Y+      
Sbjct: 354 RKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGR-- 411

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                  FE+ L  ++    E   + K    ++  Y  L+ GY  +G+  +  R+   M+
Sbjct: 412 -------FEEAL--NVCKEMESSGIKK----DAVTYNALLGGYGKQGKYEEVKRVFEEMK 458

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+ +TY+T++    K G    A +V  E  + G+ A+ + Y+ L+   C+  
Sbjct: 459 AER---IFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNG 515

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++ A   L EM  +  I P+VV+YN +ID F     S  A    +      +  +K+S 
Sbjct: 516 LVESAVSFLDEMTKEG-IRPNVVTYNSIIDAF---GRSGSAECVIDPPYETNV--SKMSS 569

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR------ 414
           ++L K    +++ ++ +K  +++++        +   +  E  C        ++      
Sbjct: 570 SSL-KVVEDATESEVGDKEDNQIIK--------IFGQLAAEKTCHAKKENRGRQEILCIL 620

Query: 415 -IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            +  +M E    PNV T+ ++ N  S      +A +L +E++
Sbjct: 621 AVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELR 662


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 210/490 (42%), Gaps = 73/490 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD--------------DGPVESVKLFDVV---VKRVR 43
           + RSG  P V  +ST +  L   G+              + P+ S    DV+    KR  
Sbjct: 347 IYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGE 406

Query: 44  KFSDPDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            F    ++ + K     PD  +Y+ ++NA    G   K L L ++M     KP +++Y  
Sbjct: 407 VFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTS 466

Query: 99  MIK-LCARASRKHLLVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +I  LC    +K++L   ++    +G + C    T +++L+  +   GD++ A  +++ M
Sbjct: 467 LIHGLC----KKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEM 522

Query: 155 REGRRDVCKIIRELDLEDYSSENE-------GDDDDDDEVFEKLLPNSINPSS------- 200
                    I  EL    +S  +        G  D   EVF  +L + I P +       
Sbjct: 523 ---------ICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYIL 573

Query: 201 ----------EPPLLPKTFAP-----NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                     E   L + F       N   Y  ++     EG     + +L  M ++   
Sbjct: 574 DGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRN-- 631

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P  V Y+T++S   K  +  RA  +   M ++G+  N  TY IL+  +    ++ +A
Sbjct: 632 -VLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEA 690

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             + +EM +   +  D +SY  LI GF    +   A   F EM   G +P  I+YT ++ 
Sbjct: 691 YGIFKEMKERG-LCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIID 749

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            F  S++  LA  VFD+M RD  +  D+V + +L++ Y + G  ++A ++ + MK+ G  
Sbjct: 750 GFCKSNRIDLATWVFDKMNRDSVIP-DVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVL 808

Query: 426 PNVATYGSLA 435
           P+  T+  L 
Sbjct: 809 PDDITHNVLG 818



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 142/315 (45%), Gaps = 25/315 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVR----MLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           +PN   YT +M  Y ++      +R    +LG + R  +    P  VTY+T +  L K G
Sbjct: 314 SPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEK---PTVVTYSTYIHGLCKVG 370

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           +++ A  ++  +     P N  ++N ++ G+C++ ++ +A ++L EM     I PDV SY
Sbjct: 371 NVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSG-ILPDVYSY 429

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           +ILI+ F    D    L    EM    I P+ +SYT+L+      +  + A  +F   + 
Sbjct: 430 SILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHS-IG 488

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
               K D   +  L++G+C  G ++ A +++E M  N   P   +  SL  G        
Sbjct: 489 ASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFD 548

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
           +AL ++  +                L   + PD    + + D   RA +F++AL ++   
Sbjct: 549 QALEVFNAM----------------LRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDF 592

Query: 506 EEHGIPPNKTKYKKI 520
           +EHG   N   Y  I
Sbjct: 593 QEHGFNLNPHSYNAI 607



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/481 (20%), Positives = 198/481 (41%), Gaps = 86/481 (17%)

Query: 49  DIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL- 102
           D+ S++K     PD    N +L       + +   ++F+++ + G  P++ TY +M+   
Sbjct: 268 DVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFY 327

Query: 103 -----CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
                C    R+  +  +L +I   G    + T+ + +      G++E A  +++ +   
Sbjct: 328 CSDVGCDAGMRQAAV--ILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLH-- 383

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                          Y+++                          PL       NS  + 
Sbjct: 384 ---------------YTNQ--------------------------PL-------NSHSFN 395

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            ++ G+   G V + +++L  M+    +   PD  +Y+ +++A    G + +   ++ EM
Sbjct: 396 DVIYGFCKRGEVFEALQVLEEMK---SSGILPDVYSYSILINAFCGKGDVMKCLDLMEEM 452

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILID 336
               +  + ++Y  L+ G C++  +  A ++   + A   K +  V  Y  LIDGF +  
Sbjct: 453 EHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTV--YETLIDGFCMQG 510

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           D   A+    EM    + PT  S  +L++ +        A +VF+ MLRD  +  D +A 
Sbjct: 511 DMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDG-IWPDTIAC 569

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N +++G CR G  +EA  ++E  +E+GF  N  +Y ++   +     P  AL L   + +
Sbjct: 570 NYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLK 629

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           R            ++ P +     L+   A    + + F++A+ +   M + GI  N   
Sbjct: 630 R------------NVLPSVVNYSTLISGFA----KQSNFKRAVNLFTRMVKVGITFNIAT 673

Query: 517 Y 517
           Y
Sbjct: 674 Y 674



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 23/228 (10%)

Query: 295 GYCQQLQIDKAKELLREMADDAK-IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           G+C + + D   EL     D  + +E   V +++LI  F        AL  F+  +  G+
Sbjct: 220 GFCNEAKYDTF-ELFSAFLDSPQHVERSGVVFDVLISVFASNSMLENALDVFSNAKHVGL 278

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR-MGL---V 409
            P   +   L+K    +++ +   +VF+E L+D     +I  + +++  YC  +G    +
Sbjct: 279 EPDIRTCNFLLKCLVEANRVEFVRRVFEE-LKDRGPSPNIYTYTIMMNFYCSDVGCDAGM 337

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            +A  I+ ++  +G  P V TY +  +G+        AL+L + +        + +N+ S
Sbjct: 338 RQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNL----HYTNQPLNSHS 393

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                        D +   C R   F +AL+++  M+  GI P+   Y
Sbjct: 394 -----------FNDVIYGFCKRGEVF-EALQVLEEMKSSGILPDVYSY 429


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 198/456 (43%), Gaps = 64/456 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   +  ++      G   K L+L + M  FG  P+ + YN ++    R  R      
Sbjct: 179 KPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEK 238

Query: 115 VLERILEMGITLCMTTFQSLVAAYVG----------FGDLEIAETI---------VQAMR 155
           ++E++ E G+   + TF S ++A             F D+E+ E +            M 
Sbjct: 239 MVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEV--------FEKLLPNSINPSSEPPL--- 204
           +G    CK+     LED  +  E   ++DD           + L+ +     +E  L   
Sbjct: 299 KG---FCKVGL---LEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQM 352

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
             K   P+   Y  LM G    G +SD   ++G M+R   N   PD VTY  ++      
Sbjct: 353 TDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKR---NGVCPDAVTYGCLLHGYCSV 409

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +D A+ +L EM R     N  T NILL    +  +I +A+ELLR+M ++     D V+
Sbjct: 410 GKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKM-NEKGYGLDTVT 468

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIA-----------------------PTKISYT 361
            NI++DG     +   A+     MR  G A                       P  I+Y+
Sbjct: 469 CNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYS 528

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           TL+     + +   A  +F EM+ + +++ D VA+N+ +  +C+ G +  A R+++ M++
Sbjct: 529 TLLNGLCKAGRFAEAKNLFAEMMGE-KLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEK 587

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            G + ++ TY SL  G+ +  +  E   L  E+KE+
Sbjct: 588 KGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEK 623



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 123/539 (22%), Positives = 229/539 (42%), Gaps = 44/539 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL-----CARAS 107
           ++KP    YN +L +C    + +    L+  M   G  P   T+N++I+      C  A+
Sbjct: 107 ENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAA 166

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
           R+     + + + E G      TF  LV  Y   G  +    ++ AM        K+I  
Sbjct: 167 RE-----LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYN 221

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
             +  +    EG +DD +++ EK+         E  L+P     NSRI + L K    EG
Sbjct: 222 TIVSSFC--REGRNDDSEKMVEKM--------REEGLVPDIVTFNSRI-SALCK----EG 266

Query: 228 RVSDTVRMLGAMRRQED-NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           +V D  R+   M   E      P+ +TY  ++    K G ++ A+ +   +      A+ 
Sbjct: 267 KVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASL 326

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            +YNI L+G  +  +  +A+ +L++M D   I P + SYNIL+DG   +   + A T   
Sbjct: 327 QSYNIWLQGLVRHGKFIEAETVLKQMTDKG-IGPSIYSYNILMDGLCKLGMLSDAKTIVG 385

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M+  G+ P  ++Y  L+  +    +   A  +  EM+R+  +  +    N+L+    +M
Sbjct: 386 LMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLP-NAYTCNILLHSLWKM 444

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE--- 463
           G + EA+ ++ +M E G+  +  T   + +G+  + +  +A+ + K ++           
Sbjct: 445 GRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLG 504

Query: 464 ----GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
               G+  DS +     PD      L +   +A  F +A  + A M    + P+   Y  
Sbjct: 505 NSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYN- 563

Query: 520 IYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFW------LGLPNSYYGSEWRLDPM 572
             + +H      K +S  R  +  E+K   ++ + +      LG+ N  +     +D M
Sbjct: 564 --IFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEM 620



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 155/388 (39%), Gaps = 35/388 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  +L+   ++GK      L  +M      P+  T N+++    +  R      +
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEEL 453

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++ E G  L   T   +V    G G+L+ A  IV+ MR                 + S
Sbjct: 454 LRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRV----------------HGS 497

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G+           L NS     +  L+     P+   Y+TL+ G    GR ++   +
Sbjct: 498 AALGN-----------LGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNL 546

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  ++     PD V Y   +    K G +  A +VL +M + G   +  TYN L+ G
Sbjct: 547 FAEMMGEK---LQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILG 603

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
              + QI +   L+ EM +   I P++ +YN  I      +    A    +EM  + IAP
Sbjct: 604 LGIKNQIFEIHGLMDEMKEKG-ISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAP 662

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              S+  L++AF       +A +VF+  +     K  +  ++++       G + +A  +
Sbjct: 663 NVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGL--YSLMFNELLAAGQLLKATEL 720

Query: 416 IERMKENGFYPNVATYGSLANGISLARK 443
           +E + + GF      Y  L    SL +K
Sbjct: 721 LEAVLDRGFELGTFLYKDLVE--SLCKK 746


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 214/503 (42%), Gaps = 49/503 (9%)

Query: 43  RKFSDPDIVSDS--KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           R  S  D++S S  +    AY+A+L   + LG     +  + +M   G +P++L YN +I
Sbjct: 333 RTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVI 392

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR 159
               +         +++++ E  ++    T+ S++  +    DL+ A  +   M +EG  
Sbjct: 393 NALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCE 452

Query: 160 DVCKIIREL--DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP----------- 206
                   L   L D    NE  D   + +   +LP +   +   P++            
Sbjct: 453 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA--HTCTGPIIALCDMGCYEDAW 510

Query: 207 --------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                   K   PN   YT L+ G    G +   +   G   R   +   P+ VTY  ++
Sbjct: 511 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI---GLFHRMSRDGVFPNTVTYNALI 567

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + LV+   +  A  VL  M R G+  N +TYN ++KGYC      KA  ++  M      
Sbjct: 568 NILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH- 626

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
             ++V+YN +I G+    ++  AL   + MR  G  P + SYT L+  F   S+ + A  
Sbjct: 627 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 686

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+EM+ D     + V +  L++GYC+   ++ A  ++E MK +G  PNV TY  L +G+
Sbjct: 687 LFNEMVDDGLCPNE-VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 745

Query: 439 SLARKPGEALLLWKEIKERCEVK-KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +       A       +E C+V  +EG+           P+     A+ D   +      
Sbjct: 746 TKQNNFSGA-------EELCKVMIEEGI----------FPNVVTYTAMIDGLCKNGSTSL 788

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           ALE+   M E G  PN   Y  +
Sbjct: 789 ALEMFNKMIEQGCLPNLLTYSSL 811



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/517 (22%), Positives = 199/517 (38%), Gaps = 106/517 (20%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   Y A+++     G  K  + LF +M   G  P+ +TYN +I +     R      
Sbjct: 522 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 581

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL  +   G+   + T+  ++  Y   GD + A  ++  M                    
Sbjct: 582 VLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNM-------------------- 621

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                         L +  + N   Y T++KGY + G  +  +R
Sbjct: 622 ------------------------------LQRGHSANLVTYNTIIKGYCDSGNTTSALR 651

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  MR   D    PD  +YT ++    K   M+ A  +  EM   G+  N +TY  L+ 
Sbjct: 652 ILDLMR---DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID 708

Query: 295 GYCQQLQIDKAKELLREMADDA----------------------------------KIEP 320
           GYC+  ++D A  LL  M                                       I P
Sbjct: 709 GYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP 768

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           +VV+Y  +IDG      ++ AL  FN+M  +G  P  ++Y++L++A     + + A  +F
Sbjct: 769 NVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 828

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS- 439
            E+ R   +  D + +  ++E Y   G VE A   + RM + G  P + TYG L  G+  
Sbjct: 829 AELERHGLIP-DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 887

Query: 440 ---LARKPGEALLLWKEIKERCEVKKEGVNAD---------SDLPPPLKPDEELLDALAD 487
              LA +   AL    ++   C    +  + D         ++L P L    ++ +AL  
Sbjct: 888 EYLLADQRLAAL---PDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSV--QVQNALVS 942

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
               A  + +A E++  M   G+ P++  Y  +   +
Sbjct: 943 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSL 979



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/503 (18%), Positives = 189/503 (37%), Gaps = 69/503 (13%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAAS-------------GDDGPVESVKLFDVVVKRVRKFSD 47
            M R G  P+   ++ +++ L  +             G +G   ++  ++ ++K      D
Sbjct: 551  MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGD 610

Query: 48   PD---------IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            P          +      +   YN ++    + G     L++ D M + G KPD  +Y  
Sbjct: 611  PKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTE 670

Query: 99   MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REG 157
            +I    + S+      +   +++ G+     T+ +L+  Y     L+ A ++++ M R G
Sbjct: 671  LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG 730

Query: 158  RRDVCKIIRELDLEDYSSENEGDDDDDDEVF--EKLLPNSI-----------NPSSEPPL 204
             R   +    L        N    ++  +V   E + PN +           N S+   L
Sbjct: 731  CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 790

Query: 205  ------LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                  + +   PN   Y++L++    EG+V +   +   + R       PD +TY  ++
Sbjct: 791  EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH---GLIPDEITYVKMI 847

Query: 259  SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ-LQIDKAKELLREM----- 312
             A + +G ++ A   L  M + G      TY +L+KG   + L  D+    L ++     
Sbjct: 848  EAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS 907

Query: 313  ---------------ADDAKIEP--DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
                           A  A+++P   V   N L+           A      M ++G+ P
Sbjct: 908  FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCP 967

Query: 356  TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             + +Y +L+ +        LA  VF  M      +V +  +  L+   C++   +EA+  
Sbjct: 968  DQEAYNSLLCSLLRVRNVDLAMGVFKHM-STQGCEVHLNGYKELICALCQLHRRKEARIT 1026

Query: 416  IERMKENGFYPNVATYGSLANGI 438
             E M    + P+      L +G+
Sbjct: 1027 FENMLMRTWNPDDVVQAVLIDGL 1049



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 50/386 (12%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M RSG  P+V+ ++ ++  L    +    E  +L  V+++               P+   
Sbjct: 726  MKRSGCRPNVQTYNVLIHGLTKQNNFSGAE--ELCKVMIEE-----------GIFPNVVT 772

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            Y A+++     G     L++F++M E G  P++LTY+ +I+   +  +      +   + 
Sbjct: 773  YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 832

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------IIRELDLED 172
              G+     T+  ++ AY+  G +E A   +  M +     C+        +I+ L  E 
Sbjct: 833  RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG---CQPTLWTYGVLIKGLKNEY 889

Query: 173  YSSENEGDDDDDDEVFEKLLPN-------------SINPSSEPPLLPKTFAPNSRIYTTL 219
              +      D        ++PN             S+  +    L P     + ++   L
Sbjct: 890  LLA------DQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGL---SVQVQNAL 940

Query: 220  MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
            +      GR  +   +LG+M  Q      PD   Y +++ +L++  ++D A  V   M+ 
Sbjct: 941  VSNLSTAGRWFEANELLGSMISQ---GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 997

Query: 280  IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
             G   +   Y  L+   CQ  +  +A+     M       PD V   +LIDG +      
Sbjct: 998  QGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT-WNPDDVVQAVLIDGLLRDGYKD 1056

Query: 340  GALTFFNEMRARGIAPTKISYTTLMK 365
              + F + M  R   P+   YT L +
Sbjct: 1057 LCMEFLHIMETRRYMPSFHIYTILAR 1082


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 193/400 (48%), Gaps = 22/400 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  +   ++N     G+P++   +F+ + E G KP ++TY  ++    R    H L+ ++
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSS 175
            ++ + G+      F +++ A    G+L+ A  I + M+E G +        L ++ Y  
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTL-IKGYGK 436

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  ++   + + +L + +              PN R    L++ + N+ ++ +   +
Sbjct: 437 --IGKLEESSRLLDMMLRDEM------------LQPNDRTCNILVQAWCNQRKIEEAWNI 482

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR-QVLAEMTRIGVPANRITYNILLK 294
           +  M   +     PD VT+ T+  A  + GS   A   ++  M    V  N  T   ++ 
Sbjct: 483 VYKM---QSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVN 539

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++ ++++A      M  +  + P++  +N LI GF+ I+D  G     + M   G+ 
Sbjct: 540 GYCEEGKMEEALRFFYRM-KELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVK 598

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++++TLM A++     K   +++ +ML +  +  DI A+++L +GY R G  E+A++
Sbjct: 599 PDVVTFSTLMNAWSSVGDMKRCEEIYTDML-EGGIDPDIHAFSILAKGYARAGEPEKAEQ 657

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           I+ +M++ G  PNV  Y  + +G   A +  +A+ ++K++
Sbjct: 658 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 697



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 24/337 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ +   P+   YTTL+     +        +L  + + E N   PD + +  +++A  +
Sbjct: 345 LIEEGHKPSLITYTTLVTALTRQKHFHS---LLSLISKVEKNGLKPDTILFNAIINASSE 401

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           +G++D+A ++  +M   G      T+N L+KGY +  +++++  LL  M  D  ++P+  
Sbjct: 402 SGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDR 461

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDE 382
           + NIL+  +        A     +M++ G+ P  +++ TL KA+A + S     + +   
Sbjct: 462 TCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPR 521

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG---IS 439
           ML + +VK ++     +V GYC  G +EEA R   RMKE G +PN+  + SL  G   I+
Sbjct: 522 MLHN-KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580

Query: 440 LARKPGEALLLWKEIKERCEVKKEG--VNADSD--------------LPPPLKPDEELLD 483
                GE + L +E   + +V      +NA S               L   + PD     
Sbjct: 581 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFS 640

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            LA    RA    KA +I+  M + G+ PN   Y +I
Sbjct: 641 ILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQI 677



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 108/519 (20%), Positives = 224/519 (43%), Gaps = 51/519 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+V+ L            K F  ++  + K     +    KPDT  
Sbjct: 345 LIEEGHKPSLITYTTLVTALTRQ---------KHFHSLLSLISKVEKNGL----KPDTIL 391

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR-----ASRKHLLVFV 115
           +NA++NA +  G   + +++F++M E G KP   T+N +IK   +      S + L + +
Sbjct: 392 FNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 451

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYS 174
            + +L+     C      LV A+     +E A  IV  M+  G +    ++    L    
Sbjct: 452 RDEMLQPNDRTC----NILVQAWCNQRKIEEAWNIVYKMQSYGVKP--DVVTFNTLAKAY 505

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +        +D +  ++L N +              PN R   T++ GY  EG++ + +R
Sbjct: 506 ARIGSTCTAEDMIIPRMLHNKVK-------------PNVRTCGTIVNGYCEEGKMEEALR 552

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                 R ++   HP+   + +++   +    MD   +V+  M   GV  + +T++ L+ 
Sbjct: 553 FF---YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +     + + +E+  +M +   I+PD+ +++IL  G+    +   A    N+MR  G+ 
Sbjct: 610 AWSSVGDMKRCEEIYTDMLEGG-IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVR 668

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  + YT ++  +  + + K A +V+ +M     +  ++  +  L+ G+       +A+ 
Sbjct: 669 PNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEE 728

Query: 415 IIERMKENGFYPNVATYGSLANG---ISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           +++ M+     P   T   +A+G   I ++    +A  L        ++      A S  
Sbjct: 729 LLKDMEGKNVVPTRKTMQLIADGWKSIGVSNS-NDANTLGSSFSTSSKLNIPNNIASSRS 787

Query: 472 PPPLKPDEELLDALADICVRAAF-FRKALEIVACMEEHG 509
           P  LK   E       +C+++ F  R+ L +V C ++ G
Sbjct: 788 PLFLKGMPE----KPKLCIKSQFGLRQTLLVVLCRDQIG 822


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 152/305 (49%), Gaps = 23/305 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++ IY +L+  +   G     + ++  M R    A  P   TY  VV+A   AG+  +A
Sbjct: 186 PDADIYNSLINAHARAGLWRWAINIMDDMLRA---AIPPSRATYNNVVNACGAAGNWKKA 242

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M R GV  + +T+NI+L  +    Q  KA     EM   A I PD  + NI+I 
Sbjct: 243 LELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYF-EMMKGANIAPDTFTLNIVIH 301

Query: 331 GFILIDDSAGALTFFNEMRARGI--APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
             + +     A+   N MR + +  +P  ++YT+++ ++ +  Q +    VFD M+ +  
Sbjct: 302 CLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEG- 360

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           VK +IV++N L+  Y   G+  EA  I + +K+NG  P+V +Y +L N    + +P +A 
Sbjct: 361 VKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAR 420

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            ++ E+++                   KP++   +AL D    A  F++A+ ++  ME+ 
Sbjct: 421 EVFNEMRKN----------------SCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKD 464

Query: 509 GIPPN 513
           GIPP+
Sbjct: 465 GIPPD 469



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 199/500 (39%), Gaps = 69/500 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A YN V+NAC   G  KK L+L  +M   G  PD++T+N+++       +       
Sbjct: 221 PSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGY 280

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +    I     T   ++   V  G    A  ++ +MRE R      +       +S 
Sbjct: 281 FEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSY 340

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  ++   VF+ ++   + P             N   Y  L+  Y + G  ++    
Sbjct: 341 YVCGQVENCKAVFDMMVAEGVKP-------------NIVSYNALLGAYASHGMHTEA--- 384

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G  +  + N   PD V+YTT+++A  ++   ++AR+V  EM +     N+++YN L+  
Sbjct: 385 FGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDA 444

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVS------------------------------- 324
           Y       +A  LL EM  D  I PDVVS                               
Sbjct: 445 YGSAGMFKEAISLLHEMEKDG-IPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIEL 503

Query: 325 ----YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
               YN  I  ++   D   AL  +  M A  + P  ++Y  L+       +   + K F
Sbjct: 504 NIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFF 563

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           ++M+ D R+ +    ++ L+  Y +   + EA+     MK +G +P+V TY ++   I  
Sbjct: 564 EDMV-DLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAM---IQA 619

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
               G    +W   KE      EG NA       + PD  +  +L +   +   + + L+
Sbjct: 620 YTDHGSWTSVWDLFKE-----MEG-NA-------ILPDAIICSSLMEALNKGNQYGRVLQ 666

Query: 501 IVACMEEHGIPPNKTKYKKI 520
           ++  M +  I  N+  Y +I
Sbjct: 667 LMKFMHDQCIQLNQKAYFEI 686



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 51/409 (12%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           LF +M E+  KPD   YN +I   ARA      + +++ +L   I     T+ ++V A  
Sbjct: 175 LFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACG 234

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             G+ + A  + + M         +   + L  +  +N          FE +   +I   
Sbjct: 235 AAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAF--KNGFQYTKATGYFEMMKGANI--- 289

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                 P TF  N  I+  +       G+  D V +L +MR +    S PD VTYT+++ 
Sbjct: 290 -----APDTFTLNIVIHCLV-----KVGQHGDAVDLLNSMREKRVQCS-PDVVTYTSIIH 338

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           +    G ++  + V   M   GV  N ++YN LL  Y       +A  + + +  +  + 
Sbjct: 339 SYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNG-LR 397

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PDVVSY  L++ +        A   FNEMR     P K+SY  L+ A+  +   K A  +
Sbjct: 398 PDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISL 457

Query: 380 FDEMLRDP----------------------------------RVKVDIVAWNMLVEGYCR 405
             EM +D                                    ++++IVA+N  +  Y  
Sbjct: 458 LHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLS 517

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            G  E+A ++   M  +   P+  TY  L +G+    K  E+L  ++++
Sbjct: 518 FGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDM 566



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 125/605 (20%), Positives = 222/605 (36%), Gaps = 112/605 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS------ 54
           MLR+   P    ++ VV+   A+G+       K  ++  K +R    PD+V+ +      
Sbjct: 214 MLRAAIPPSRATYNNVVNACGAAGN-----WKKALELCKKMIRNGVGPDLVTHNIVLSAF 268

Query: 55  ---------------------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHE--FGAKP 91
                                 PDT   N V++    +G+    + L + M E      P
Sbjct: 269 KNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSP 328

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           DV+TY  +I       +      V + ++  G+   + ++ +L+ AY   G    A  I 
Sbjct: 329 DVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIF 388

Query: 152 QAMREG--RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           + +++   R DV      L+    S++ E       EVF ++  NS  P           
Sbjct: 389 KLLKQNGLRPDVVSYTTLLNAYGRSAQPE----KAREVFNEMRKNSCKP----------- 433

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
             N   Y  L+  Y + G   + + +L  M   E +   PD V+ +T+++A  +     +
Sbjct: 434 --NKVSYNALIDAYGSAGMFKEAISLLHEM---EKDGIPPDVVSISTLLAACGRCRQTTK 488

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
              VL      G+  N + YN  +  Y      +KA +L   M   + + PD V+YNILI
Sbjct: 489 IDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMA-SNVNPDAVTYNILI 547

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G   +   A +L FF +M    I  TK  Y++L+ ++    +   A   F  M +    
Sbjct: 548 SGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINM-KASGC 606

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D++ +  +++ Y   G       + + M+ N   P+     SL   ++   + G  L 
Sbjct: 607 FPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQ 666

Query: 450 LWK---------------EIKERCEVKKEGVNA-------DSDLPP-------------- 473
           L K               EI   C + ++   A       DS LP               
Sbjct: 667 LMKFMHDQCIQLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLPSISVGKLNYLLNFLG 726

Query: 474 ---PLKPDEELLDALADICVRAAF---------------FRKALEIVACMEEHGIPPNKT 515
                +   +L   +   C                    +RK +E++  ME+ G+ P   
Sbjct: 727 KCGKTESMMKLFYKMVSSCSTVGLSTYKVLLRNLLAVGKWRKYVEVLQWMEDAGVRPTLY 786

Query: 516 KYKKI 520
            Y+ +
Sbjct: 787 MYQNV 791



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 135/316 (42%), Gaps = 23/316 (7%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + +   + IY  +++ +    +V D  R  G     ++    PD   Y ++++A  +AG 
Sbjct: 147 ENYCARNDIYGMMIQLHARHNQV-DQAR--GLFFEMQEWRCKPDADIYNSLINAHARAGL 203

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
              A  ++ +M R  +P +R TYN ++          KA EL ++M  +  + PD+V++N
Sbjct: 204 WRWAINIMDDMLRAAIPPSRATYNNVVNACGAAGNWKKALELCKKMIRNG-VGPDLVTHN 262

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           I++  F        A  +F  M+   IAP   +   ++       Q   A  + + M R+
Sbjct: 263 IVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSM-RE 321

Query: 387 PRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
            RV+   D+V +  ++  Y   G VE  K + + M   G  PN+ +Y +L    +     
Sbjct: 322 KRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMH 381

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            EA  ++K +K+                  L+PD      L +   R+A   KA E+   
Sbjct: 382 TEAFGIFKLLKQN----------------GLRPDVVSYTTLLNAYGRSAQPEKAREVFNE 425

Query: 505 MEEHGIPPNKTKYKKI 520
           M ++   PNK  Y  +
Sbjct: 426 MRKNSCKPNKVSYNAL 441



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 64/345 (18%), Positives = 138/345 (40%), Gaps = 31/345 (8%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDSKP------DTAAYNAVLNACANLGKPKKFLQLFD 82
           V S+        R R+ +  D V ++        +  AYN+ + +  + G  +K L+L+ 
Sbjct: 470 VVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYA 529

Query: 83  QMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
            M      PD +TYN++I  LC        L F  E ++++ I L    + SL+ +YV  
Sbjct: 530 TMMASNVNPDAVTYNILISGLCKLGKYAESLKF-FEDMVDLRIPLTKEVYSSLICSYVKQ 588

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
             L  AE+    M+        +     ++ Y+  + G      ++F+++  N+I     
Sbjct: 589 DKLAEAESTFINMKASGCFPDVLTYTAMIQAYT--DHGSWTSVWDLFKEMEGNAI----- 641

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                    P++ I ++LM+  +N+G  +   R+L  M+   D     +   Y  ++++ 
Sbjct: 642 --------LPDAIICSSLMEA-LNKG--NQYGRVLQLMKFMHDQCIQLNQKAYFEIIASC 690

Query: 262 VKAGSMDRARQVLAEM--TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
                   A +++  +  +   +   ++ Y +   G C   + +   +L  +M       
Sbjct: 691 SMLRDWKTASEIIEHLDSSLPSISVGKLNYLLNFLGKCG--KTESMMKLFYKMVSSCSTV 748

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
             + +Y +L+   + +      +     M   G+ PT   Y  ++
Sbjct: 749 -GLSTYKVLLRNLLAVGKWRKYVEVLQWMEDAGVRPTLYMYQNVL 792


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 199/460 (43%), Gaps = 37/460 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P +  +N +L          ++   F++  +     DV ++ ++IK C  A        +
Sbjct: 127 PGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDL 185

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G +  +  + +L+      G++E A+ +   M  G+  +        +  +  
Sbjct: 186 LVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM--GKFGLVANEWTYTVLIHGL 243

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G      E++EK+  + +              PN   Y  +M     +GR  D  ++
Sbjct: 244 FKNGIKKQGFEMYEKMQEHGV-------------FPNLYTYNCVMNQLCKDGRTKDAFKV 290

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              MR +       + VTY T++  L +    + A +V+ +M    +  N ITYN L+ G
Sbjct: 291 FDEMRER---GVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDG 347

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   ++ KA  L R++     + P +V+YN+L+ GF    D++GA     EM  RGI P
Sbjct: 348 FCSVGKLGKALSLCRDLKSRG-LSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKP 406

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           +K++YT L+  FA S   + A ++   M  +  +  D+  +++L+ G+C  G + EA R+
Sbjct: 407 SKVTYTILIDTFARSDNMETAIQLRSSM-EELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            + M E    PN   Y ++  G         AL L+++++E+                 L
Sbjct: 466 FKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEK----------------EL 509

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
            P+      L  +  +    ++A ++V  M + GI P+ T
Sbjct: 510 APNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDT 549



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 188/421 (44%), Gaps = 65/421 (15%)

Query: 27  GPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
           G +E  K FD++V+ +R+F          P+   Y  +++ C   G+ +K   LF +M +
Sbjct: 177 GEIE--KSFDLLVE-LREFG-------FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK 226

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           FG   +  TY V+I    +   K     + E++ E G+   + T+  ++           
Sbjct: 227 FGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVM----------- 275

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
                         +CK              +G   D  +VF+++    +          
Sbjct: 276 ------------NQLCK--------------DGRTKDAFKVFDEMRERGV---------- 299

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
              + N   Y TL+ G   E + ++  +++  M+    N   P+ +TY T++      G 
Sbjct: 300 ---SCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVIN---PNLITYNTLIDGFCSVGK 353

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           + +A  +  ++   G+  + +TYN+L+ G+C++     A ++++EM ++  I+P  V+Y 
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEM-EERGIKPSKVTYT 412

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILID F   D+   A+   + M   G+ P   +Y+ L+  F +  Q   A+++F  M+ +
Sbjct: 413 ILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMV-E 471

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             ++ + V +N ++ GYC+ G    A R+   M+E    PNVA+Y  L   +   RK  E
Sbjct: 472 KMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKE 531

Query: 447 A 447
           A
Sbjct: 532 A 532



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 21/302 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  ++KG    G +  +  +L  +R   +    P+ V YTT++    K G +++A+ +  
Sbjct: 166 FGIVIKGCCEAGEIEKSFDLLVELR---EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF 222

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM + G+ AN  TY +L+ G  +     +  E+  +M +   + P++ +YN +++     
Sbjct: 223 EMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHG-VFPNLYTYNCVMNQLCKD 281

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             +  A   F+EMR RG++   ++Y TL+       +   ANKV D+M +   +  +++ 
Sbjct: 282 GRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQM-KSYVINPNLIT 340

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N L++G+C +G + +A  +   +K  G  P++ TY  L +G         A  + KE++
Sbjct: 341 YNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEME 400

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           ER                 +KP +     L D   R+     A+++ + MEE G+ P+  
Sbjct: 401 ER----------------GIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVH 444

Query: 516 KY 517
            Y
Sbjct: 445 TY 446



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 155/367 (42%), Gaps = 58/367 (15%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +T    SR+Y  ++  Y+    +  ++     M    D    P    +  +++ +V + S
Sbjct: 88  ETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMV---DKGFVPGSNCFNNLLTFVVGSSS 144

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            ++      E ++I V  +  ++ I++KG C+  +I+K+ +LL E+ +     P+VV Y 
Sbjct: 145 FNQWWCFFNE-SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFG-FSPNVVIYT 202

Query: 327 ILIDG-------------------FILIDD----------------SAGALTFFNEMRAR 351
            LIDG                   F L+ +                       + +M+  
Sbjct: 203 TLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEH 262

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P   +Y  +M       + K A KVFDEM R+  V  +IV +N L+ G CR     E
Sbjct: 263 GVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEM-RERGVSCNIVTYNTLIGGLCREMKANE 321

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A +++++MK     PN+ TY +L +G     K G+AL L +++K R             L
Sbjct: 322 ANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSR------------GL 369

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTS 531
            P L     L+        R      A ++V  MEE GI P+K  Y  I ++  +R    
Sbjct: 370 SPSLVTYNVLVSGFC----RKGDTSGAAKMVKEMEERGIKPSKVTY-TILIDTFARSDNM 424

Query: 532 KHASQAR 538
           + A Q R
Sbjct: 425 ETAIQLR 431



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 18/222 (8%)

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           Q Q   +  LL  + +    +     Y ++I+ ++       ++ +FNEM  +G  P   
Sbjct: 71  QSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSN 130

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            +  L+     SS        F+E     +V +D+ ++ ++++G C  G +E++  ++  
Sbjct: 131 CFNNLLTFVVGSSSFNQWWCFFNE--SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVE 188

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           ++E GF PNV  Y +L +G     K GE   + K      E+ K G+ A          +
Sbjct: 189 LREFGFSPNVVIYTTLIDGCC---KKGE---IEKAKDLFFEMGKFGLVA----------N 232

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           E     L     +    ++  E+   M+EHG+ PN   Y  +
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCV 274


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 212/496 (42%), Gaps = 66/496 (13%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D    + ++ AC   G+ ++  + F +  E G K D   Y+++I+   +    +L + +L
Sbjct: 259 DHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELL 318

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E + E G      TF S++ A V  G++  A  + + M    + +  ++    ++ Y + 
Sbjct: 319 EEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCA- 377

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +G+ D    +F K+  + +              PN   Y+ L++G  N G +     + 
Sbjct: 378 -QGNLDSALNLFNKITEDGL-------------FPNKVTYSVLIEGCCNSGNIEKASELY 423

Query: 237 GAMRRQ----------------------EDNASHPDHV---------TYTTVVSALVKAG 265
             M+                        E+ +   D           TY  ++S L K G
Sbjct: 424 TQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGG 483

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVS 324
            MD A  +L  M   G+  N ++YN ++ G+C++  +D A  +  +M A D K  P+VV+
Sbjct: 484 KMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLK--PNVVT 541

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y+ILIDG     DS  AL  F++M +  IAPT  ++ T++       Q   A       L
Sbjct: 542 YSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFL 601

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
            +  +    + +N +V+G+ + G ++ A  +   M E G  PNV TY SL NG   + + 
Sbjct: 602 EEGFIP-SCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRI 660

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
             AL      K R E++++G          L+ D     AL D   +      A ++   
Sbjct: 661 DLAL------KTRDEMREKG----------LELDVTAYSALIDGFCKRRDMESAQDLFFE 704

Query: 505 MEEHGIPPNKTKYKKI 520
           + E G+ PN+  Y  +
Sbjct: 705 LLEVGLSPNRIVYNSM 720



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 196/470 (41%), Gaps = 87/470 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP------------------------ 91
           P+   Y+ ++  C N G  +K  +L+ QM   G  P                        
Sbjct: 398 PNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKL 457

Query: 92  ----------DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
                     ++ TYN+M+    +  +      +L+ ++  G+   + ++  ++  +   
Sbjct: 458 FDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRK 517

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
           G++++A ++   M    RD+   +    +    +  +GD +   ++F+++L  S+N    
Sbjct: 518 GNMDMASSVFSDMLA--RDLKPNVVTYSILIDGNFKKGDSEKALDLFDQML--SLN---- 569

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                   AP    + T++ G    G++S+    L     +      P  +TY ++V   
Sbjct: 570 -------IAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE---GFIPSCMTYNSIVDGF 619

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
           +K G++D A  V  EM   GV  N +TY  L+ G+C+  +ID A +   EM +   +E D
Sbjct: 620 IKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG-LELD 678

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF--------ALSSQP 373
           V +Y+ LIDGF    D   A   F E+   G++P +I Y +++  F        AL    
Sbjct: 679 VTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYK 738

Query: 374 KLAN-----------KVFDEMLRDPRVKV---------------DIVAWNMLVEGYCRMG 407
           K+ N            + D +L++ R+                 DI+ +++LV G C  G
Sbjct: 739 KMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKG 798

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +E A++I+E M      P+V  Y +L  G        EA  L  E+ +R
Sbjct: 799 QLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDR 848



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 180/437 (41%), Gaps = 68/437 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P+V +++ ++      G+     SV            FSD  +  D KP+   
Sbjct: 495 MVNQGMVPNVVSYNDMILGHCRKGNMDMASSV------------FSDM-LARDLKPNVVT 541

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++     G  +K L LFDQM      P   T+N +I    +  +       L+  L
Sbjct: 542 YSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFL 601

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G      T+ S+V  ++  G+++ A  +        R++C+                 
Sbjct: 602 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVY-------REMCEF---------------- 638

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                        +PN   YT+L+ G+    R+   ++    MR
Sbjct: 639 ---------------------------GVSPNVVTYTSLINGFCKSNRIDLALKTRDEMR 671

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +       D   Y+ ++    K   M+ A+ +  E+  +G+  NRI YN ++ G+    
Sbjct: 672 EK---GLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLN 728

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++ A    ++M +D +I  D+ +Y  LIDG +       A   + EM ++GI P  I++
Sbjct: 729 NMEAALVWYKKMIND-RIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITF 787

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+       Q + A K+ +EM R   +   ++ +N L+ GY R G ++EA  + + M 
Sbjct: 788 HVLVNGLCNKGQLENARKILEEMDRK-NMTPSVLIYNTLIAGYFREGNLKEAFTLHDEML 846

Query: 421 ENGFYPNVATYGSLANG 437
           + G  P+  TY  L NG
Sbjct: 847 DRGLVPDDVTYDILING 863



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 121/247 (48%), Gaps = 5/247 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  + R++  L+  Y+   R+ + +    AM  Q+     P       +++ALV+   + 
Sbjct: 186 FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVP---YMNILLTALVRRNMIG 242

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
             R +  +M   G+  +  T +++++   ++ ++++A+E  RE  +   ++ D  +Y+I+
Sbjct: 243 ELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERG-VKLDAGAYSII 301

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I       +S   L    EM+ RG  P++ ++T+++ A         A ++ +EM+   +
Sbjct: 302 IQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGK 361

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
             +++V    L++GYC  G ++ A  +  ++ E+G +PN  TY  L  G   +    +A 
Sbjct: 362 -PMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKAS 420

Query: 449 LLWKEIK 455
            L+ ++K
Sbjct: 421 ELYTQMK 427


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   +TTL+ GY  EG++   +++   M  Q      PD VTY T++  + + G +D+A
Sbjct: 84  PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR---LRPDIVTYNTLIDGMCRQGDLDKA 140

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +  +M    +  N +TY+IL+  +C++ Q++ A   L EM +   I P++++YN +I 
Sbjct: 141 NDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG-ILPNIMTYNSIIK 199

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+    + +    F  +M    ++P  I+Y TL+  +    +   A K+ + M+   +V+
Sbjct: 200 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLN-MMEKEKVQ 258

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+V +NML+ G+   G V+EA  I E+M   G  P+  TY S+ NG   A    EA  L
Sbjct: 259 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL 318

Query: 451 WKEIKER 457
             E+ +R
Sbjct: 319 HDEMLQR 325



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 157/332 (47%), Gaps = 23/332 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  V+      G     L++ D+M   G  PDV+TYN ++    +  R      +
Sbjct: 14  PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 73

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDY 173
           L  + E G+   + TF +L+  Y   G L+ A  +   M  +  R D+      +D    
Sbjct: 74  LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID---- 129

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               +GD D  +++++ +    I              PN   Y+ L+  +  +G+V D  
Sbjct: 130 GMCRQGDLDKANDLWDDMHSREI-------------FPNHVTYSILIDSHCEKGQVEDAF 176

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
             L  M  +      P+ +TY +++    ++G++ + ++ L +M    V  + ITYN L+
Sbjct: 177 GFLDEMINK---GILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLI 233

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GY ++ ++  A +LL  M +  K++PDVV+YN+LI+GF +  +   A   F +M A+GI
Sbjct: 234 HGYIKEDKMHDAFKLL-NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 292

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
            P + +Y +++     +   K A ++ DEML+
Sbjct: 293 EPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQ 324



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 126/314 (40%), Gaps = 70/314 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVV-KRVRKFSDPDIVSDSKPDTA 59
           M   G  P +  ++T++      G     ++++LFD ++ +R+R            PD  
Sbjct: 77  MRERGVPPDLCTFTTLIHGYCIEGK--LDKALQLFDTMLNQRLR------------PDIV 122

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER 118
            YN +++     G   K   L+D MH     P+ +TY+++I   C +   +    F L+ 
Sbjct: 123 TYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF-LDE 181

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           ++  GI   + T+ S++  Y   G++   +  +Q                          
Sbjct: 182 MINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQ-------------------------- 215

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                      K++ N +             +P+   Y TL+ GY+ E ++ D  ++L  
Sbjct: 216 -----------KMMVNKV-------------SPDLITYNTLIHGYIKEDKMHDAFKLLNM 251

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M +++     PD VTY  +++     G++  A  +  +M   G+  +R TY  ++ G+  
Sbjct: 252 MEKEK---VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVT 308

Query: 299 QLQIDKAKELLREM 312
                +A +L  EM
Sbjct: 309 AGNSKEAFQLHDEM 322



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 18/185 (9%)

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           + +  EMR  G+ P  + YT ++  F  +     A +V DEM+    +  D+V +N L+ 
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLP-DVVTYNTLLN 59

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           G C+   + +A+ ++  M+E G  P++ T+ +L +G  +  K  +AL L+          
Sbjct: 60  GLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF---------- 109

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
                 D+ L   L+PD    + L D   R     KA ++   M    I PN   Y  I 
Sbjct: 110 ------DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY-SIL 162

Query: 522 VEMHS 526
           ++ H 
Sbjct: 163 IDSHC 167



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 2/149 (1%)

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           LREM     + PD V Y ++I GF      + AL   +EM   G  P  ++Y TL+    
Sbjct: 4   LREMRCFGLV-PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 62

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              +   A  + +EM R+  V  D+  +  L+ GYC  G +++A ++ + M      P++
Sbjct: 63  KERRLLDAEGLLNEM-RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI 121

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKER 457
            TY +L +G+       +A  LW ++  R
Sbjct: 122 VTYNTLIDGMCRQGDLDKANDLWDDMHSR 150


>gi|145355437|ref|XP_001421968.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
           CCE9901]
 gi|144582207|gb|ABP00262.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
           CCE9901]
          Length = 377

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 124/248 (50%), Gaps = 10/248 (4%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P  + YT L++G  + GRV +   +L   RR   +   P+  TY+T++  L K+  +  A
Sbjct: 101 PGVQAYTALVQGLAHSGRVVEADELL---RRMARDGVKPNVYTYSTLIDGLAKSAQIGLA 157

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQL-QIDKAKELLR---EMAD---DAKIEPDVV 323
              LAEM R  +  + +TYN LLKG  + + + D+  E+LR   EM D   D  + PD+V
Sbjct: 158 ETALAEMRRAKIKPSVVTYNSLLKGVVRGIGKADRTDEVLRRAREMFDRMRDDGVPPDLV 217

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN LID  I     A A     E+   G+ P  ++YTTL+K F           V  E+
Sbjct: 218 TYNTLIDACINARAPAEAWNILREISESGLKPDVVTYTTLLKYFVQVGDDSATQWVIAEL 277

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
             DP+V  D+  +N L+  Y R G +  A   +E MK     PNV+TYGS+  G      
Sbjct: 278 ETDPQVVEDVGVYNCLINAYARQGDMCRAVETLEGMKAKNITPNVSTYGSILEGYIRLGN 337

Query: 444 PGEALLLW 451
            GEA  ++
Sbjct: 338 VGEAFKVY 345



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 139/329 (42%), Gaps = 35/329 (10%)

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           Y++EGRV +  R+L  M  +   A       + T+++   +  ++         M  +GV
Sbjct: 4   YVSEGRVEEAERVLREMTAEGVRAGPR---LFNTLITGYGREKNLRGVEASSMAMRTLGV 60

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLRE---MADDAKIEPDVVSYNILIDGFILIDDSA 339
             N+ T+   +  Y    ++D A + L +    +   +  P V +Y  L+ G        
Sbjct: 61  TPNQATWGAKVNAYVSCDRLDLAMDTLEQGVRFSPRVERRPGVQAYTALVQGLAHSGRVV 120

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A      M   G+ P   +Y+TL+   A S+Q  LA     EM R  ++K  +V +N L
Sbjct: 121 EADELLRRMARDGVKPNVYTYSTLIDGLAKSAQIGLAETALAEM-RRAKIKPSVVTYNSL 179

Query: 400 VEGYCR-MG-------LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           ++G  R +G       ++  A+ + +RM+++G  P++ TY +L +    AR P EA  + 
Sbjct: 180 LKGVVRGIGKADRTDEVLRRAREMFDRMRDDGVPPDLVTYNTLIDACINARAPAEAWNIL 239

Query: 452 KEIKERC--------------------EVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
           +EI E                      +   + V A+ +  P +  D  + + L +   R
Sbjct: 240 REISESGLKPDVVTYTTLLKYFVQVGDDSATQWVIAELETDPQVVEDVGVYNCLINAYAR 299

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                +A+E +  M+   I PN + Y  I
Sbjct: 300 QGDMCRAVETLEGMKAKNITPNVSTYGSI 328



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 139/327 (42%), Gaps = 50/327 (15%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           + +P   AY A++   A+ G+  +  +L  +M   G KP+V TY+ +I   A++++  L 
Sbjct: 98  ERRPGVQAYTALVQGLAHSGRVVEADELLRRMARDGVKPNVYTYSTLIDGLAKSAQIGLA 157

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYV-GFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              L  +    I   + T+ SL+   V G G  +  + +++  R                
Sbjct: 158 ETALAEMRRAKIKPSVVTYNSLLKGVVRGIGKADRTDEVLRRAR---------------- 201

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                         E+F+++  + +     PP L          Y TL+   +N    ++
Sbjct: 202 --------------EMFDRMRDDGV-----PPDLVT--------YNTLIDACINARAPAE 234

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYN 290
              +L   R   ++   PD VTYTT++   V+ G     + V+AE+ T   V  +   YN
Sbjct: 235 AWNIL---REISESGLKPDVVTYTTLLKYFVQVGDDSATQWVIAELETDPQVVEDVGVYN 291

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE-MR 349
            L+  Y +Q  + +A E L  M     I P+V +Y  +++G+I + +   A   +N  ++
Sbjct: 292 CLINAYARQGDMCRAVETLEGM-KAKNITPNVSTYGSILEGYIRLGNVGEAFKVYNLCVK 350

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLA 376
           + G+AP      +L+    L     +A
Sbjct: 351 SAGLAPDARMRKSLIYGCGLHGMSDIA 377



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 128/292 (43%), Gaps = 35/292 (11%)

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----E 176
           +G+T    T+ + V AYV    L++A   +  + +G R   ++ R   ++ Y++      
Sbjct: 58  LGVTPNQATWGAKVNAYVSCDRLDLA---MDTLEQGVRFSPRVERRPGVQAYTALVQGLA 114

Query: 177 NEGDDDDDDEVFEKLLPNSINP--------------SSEPPLLPKTFA--------PNSR 214
           + G   + DE+  ++  + + P              S++  L     A        P+  
Sbjct: 115 HSGRVVEADELLRRMARDGVKPNVYTYSTLIDGLAKSAQIGLAETALAEMRRAKIKPSVV 174

Query: 215 IYTTLMKGYMNE-GRVSDTVRMLGAMR----RQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            Y +L+KG +   G+   T  +L   R    R  D+   PD VTY T++ A + A +   
Sbjct: 175 TYNSLLKGVVRGIGKADRTDEVLRRAREMFDRMRDDGVPPDLVTYNTLIDACINARAPAE 234

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +L E++  G+  + +TY  LLK + Q       + ++ E+  D ++  DV  YN LI
Sbjct: 235 AWNILREISESGLKPDVVTYTTLLKYFVQVGDDSATQWVIAELETDPQVVEDVGVYNCLI 294

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           + +    D   A+     M+A+ I P   +Y ++++ +        A KV++
Sbjct: 295 NAYARQGDMCRAVETLEGMKAKNITPNVSTYGSILEGYIRLGNVGEAFKVYN 346



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 35/243 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P+V  +ST++  LA S   G      L +  +  +R+       +  KP    
Sbjct: 129 MARDGVKPNVYTYSTLIDGLAKSAQIG------LAETALAEMRR-------AKIKPSVVT 175

Query: 61  YNAVLNACA-NLGKP-------KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           YN++L      +GK        ++  ++FD+M + G  PD++TYN +I  C  A      
Sbjct: 176 YNSLLKGVVRGIGKADRTDEVLRRAREMFDRMRDDGVPPDLVTYNTLIDACINARAPAEA 235

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +L  I E G+   + T+ +L+  +V  GD    + ++  + E    V + +   +   
Sbjct: 236 WNILREISESGLKPDVVTYTTLLKYFVQVGDDSATQWVIAEL-ETDPQVVEDVGVYNCLI 294

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
            +   +GD     E  E              +  K   PN   Y ++++GY+  G V + 
Sbjct: 295 NAYARQGDMCRAVETLEG-------------MKAKNITPNVSTYGSILEGYIRLGNVGEA 341

Query: 233 VRM 235
            ++
Sbjct: 342 FKV 344


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 187/402 (46%), Gaps = 20/402 (4%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +  P+  +Y+ +++     G+  K   LFD+M   G  PDV+TY+ +I    +A   +  
Sbjct: 198 NCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKA 257

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +L+ + + G+     T+  ++  Y   G LE A  +++ M  G      ++  + L  
Sbjct: 258 EAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKM-SGSGLQPDVVTYILLIQ 316

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           Y  +  G   +   VF+              ++ K   PNS IY  L+ GY  +G + D 
Sbjct: 317 YYCK-IGRCAEARSVFDS-------------MVRKGQKPNSTIYHILLHGYATKGALIDV 362

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L  M R   +    +H  +  ++ A  K G++D+A     EM + G+  + ++Y+ +
Sbjct: 363 RDLLDLMIR---DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 419

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +   C+  +++ A     +M  +  + P+++S+  LI G   I +         EM  RG
Sbjct: 420 IHILCKIGRVEDAVYHFNQMVSEG-LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG 478

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P  I   T+M       +   A   FD M+    VK ++V++N L++GYC +G ++E+
Sbjct: 479 IHPDAIFMNTIMDNLCKEGRVVEAQDFFD-MVIHIGVKPNVVSYNTLIDGYCFVGKMDES 537

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +  +RM   G  P+  TY +L NG     +  +AL L++E+
Sbjct: 538 IKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREM 579



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 121/262 (46%), Gaps = 35/262 (13%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           + P+   Y  L+KG   E +  + + +L  M         P+ V+Y+T++    K G +D
Sbjct: 161 YTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVD 220

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  +  EM   G P + +TY+ L+ G C+   ++KA+ +L+ M D   + P+  +YNI+
Sbjct: 221 KAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKG-VMPNTRTYNIM 279

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR--- 385
           I G+  +     A+    +M   G+ P  ++Y  L++ +    +   A  VFD M+R   
Sbjct: 280 IRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQ 339

Query: 386 ---------------------DPRVKVDIV----------AWNMLVEGYCRMGLVEEAKR 414
                                D R  +D++          A+N+L+  Y + G V++A  
Sbjct: 340 KPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMT 399

Query: 415 IIERMKENGFYPNVATYGSLAN 436
               M++NG  P+V +Y ++ +
Sbjct: 400 AFTEMRQNGLRPDVVSYSTVIH 421



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 119/504 (23%), Positives = 205/504 (40%), Gaps = 109/504 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESV--KLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M+  G+ P V  +S+++  L  +      E++   +FD  V                P+T
Sbjct: 229 MIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVM---------------PNT 273

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL------CARAS----- 107
             YN ++    +LG+ ++ ++L  +M   G +PDV+TY ++I+       CA A      
Sbjct: 274 RTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDS 333

Query: 108 --RK---------HLLVF-------------VLERILEMGITLCMTTFQSLVAAYVGFGD 143
             RK         H+L+              +L+ ++  GI      F  L+ AY   G 
Sbjct: 334 MVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGA 393

Query: 144 LEIAETIVQAMREG--RRDV----------CKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
           ++ A T    MR+   R DV          CKI R  D   + ++          V E L
Sbjct: 394 VDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQ---------MVSEGL 444

Query: 192 LPNSINPSS-----------------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVS---- 230
            PN I+ +S                    ++ +   P++    T+M     EGRV     
Sbjct: 445 SPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQD 504

Query: 231 --DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
             D V  +G           P+ V+Y T++      G MD + +    M  IG+  +  T
Sbjct: 505 FFDMVIHIGV---------KPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWT 555

Query: 289 YNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           YN LL GY +  +++ A  L REM   D K     ++ NI++ G         A   + +
Sbjct: 556 YNALLNGYFKNGRVEDALALYREMFRKDVKFCA--ITSNIILHGLFQAGRIVAARELYMK 613

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  RG      +Y T++     +S    A ++F++ LR    ++D+  +N+++    ++G
Sbjct: 614 MVDRGTQLRIETYNTVLGGLCENSCVDEALRMFED-LRSKEFELDVWTFNIVINALLKVG 672

Query: 408 LVEEAKRIIERMKENGFYPNVATY 431
            ++EAK +   M   G  P+V TY
Sbjct: 673 RIDEAKSLFSAMVLRGPVPHVITY 696



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/451 (20%), Positives = 189/451 (41%), Gaps = 40/451 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP-DTA 59
           M+R G  P+   +  ++   A  G    ++   L D++++            D  P +  
Sbjct: 334 MVRKGQKPNSTIYHILLHGYATKG--ALIDVRDLLDLMIR------------DGIPFEHR 379

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           A+N ++ A A  G   K +  F +M + G +PDV++Y+ +I +  +  R    V+   ++
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN-- 177
           +  G++  + +F SL+      G+ +  E +   M         I     +++   E   
Sbjct: 440 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRV 499

Query: 178 -EGDDDDDDEVFEKLLPNSINPSSEPP-----------------LLPKTFAPNSRIYTTL 219
            E  D  D  +   + PN ++ ++                    ++     P+S  Y  L
Sbjct: 500 VEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNAL 559

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + GY   GRV D + +   M R++        +T   ++  L +AG +  AR++  +M  
Sbjct: 560 LNGYFKNGRVEDALALYREMFRKDVKFCA---ITSNIILHGLFQAGRIVAARELYMKMVD 616

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G      TYN +L G C+   +D+A  +  ++    + E DV ++NI+I+  + +    
Sbjct: 617 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSK-EFELDVWTFNIVINALLKVGRID 675

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A + F+ M  RG  P  I+Y+ ++K+       + ++ +F  M ++     D    N++
Sbjct: 676 EAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNG-CAADSHMLNVI 734

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           +      G V  A   + ++ E  F    +T
Sbjct: 735 IRRLLEKGDVRRAGTYLTKIDEKNFSVEAST 765



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 19/129 (14%)

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY---PNVATYGSLANGISLARKPGEAL 448
           D+ ++N L++G C     +EA  ++  M  +G Y   PNV +Y ++ +G     +  +A 
Sbjct: 164 DVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAY 223

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L+ E+                 PP +     L+D L     +A    KA  I+  M + 
Sbjct: 224 FLFDEM------------IGQGFPPDVVTYSSLIDGLC----KAQAMNKAEAILQHMFDK 267

Query: 509 GIPPNKTKY 517
           G+ PN   Y
Sbjct: 268 GVMPNTRTY 276


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 158/331 (47%), Gaps = 25/331 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS-------HPDHVTYTT 256
           +L   + PN+    TL+KG    G++ D   ++G ++   D  +       +PD  T+T 
Sbjct: 123 ILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTI 182

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           +V    K G +  A+ VLA M   G+    +TYN L+ GY    Q++KAK +   MA   
Sbjct: 183 LVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQ-L 241

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            + PD+ SY+ILI+GF  I     A+    EM  + I P  ++Y++L+     S +   A
Sbjct: 242 GVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYA 301

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            K+ DEM  D     +IV ++ +++  C+   V+ A  ++ +MK  G  PN+ TY  L  
Sbjct: 302 LKLVDEM-HDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIK 360

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+  + K  +A    +++ E   VK   +N  +           ++    D       F 
Sbjct: 361 GLCQSGKLEDA----RKVFEDLLVKGHNLNVYT--------YTVMIQGFCD----KGLFD 404

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           +AL +++ ME++G  PN   Y+ I + +  +
Sbjct: 405 EALTLLSKMEDNGCIPNAKTYEIIILSLFKK 435



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 176/411 (42%), Gaps = 80/411 (19%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L +          L L  +M   G KP+++  N++I    +         V
Sbjct: 60  PPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSV 119

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL+MG      T  +L+      G +     IV  ++                    
Sbjct: 120 LTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLK-------------------- 159

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                  D  ++F K++  +INP             +   +T L+ G+  EGRV +   +
Sbjct: 160 -------DAVDLFNKMILENINP-------------DVYTFTILVDGFCKEGRVKEAKNV 199

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  Q      P  VTY +++        +++A+ +   M ++GV  +  +Y+IL+ G
Sbjct: 200 LAMMMIQ---GIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILING 256

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI----------LIDDSA------ 339
           +C+   +D+A ELL+EM    +I P+VV+Y+ LIDG            L+D+        
Sbjct: 257 FCKIKMMDEAMELLKEM-HHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPP 315

Query: 340 -------------------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
                               A+    +M+ +GI P   +YT L+K    S + + A KVF
Sbjct: 316 NIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVF 375

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +++L      +++  + ++++G+C  GL +EA  ++ +M++NG  PN  TY
Sbjct: 376 EDLLVKGH-NLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTY 425



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 154/351 (43%), Gaps = 42/351 (11%)

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            N  D DD   +F +LL  +  P            PN      L  G + + +   TV  
Sbjct: 38  HNNNDVDDAVSLFNRLLQQNPTP------------PNIEFNKIL--GSLVKSKHYHTVLY 83

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   ++ E     P+ V    ++++  + G +  A  VL ++ ++G   N IT N L+KG
Sbjct: 84  LS--QKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKG 141

Query: 296 YCQQLQIDKAKELLREMADDA---------KIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            C   +I     ++ ++ D            I PDV ++ IL+DGF        A     
Sbjct: 142 LCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLA 201

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M  +GI P  ++Y +LM  + L  Q   A  +F+ M +   V  DI ++++L+ G+C++
Sbjct: 202 MMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQ-LGVSPDIQSYSILINGFCKI 260

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
            +++EA  +++ M      PNV TY SL +G+  + K   AL L  E+ +R +       
Sbjct: 261 KMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQ------- 313

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                PP +     +LDAL     +      A+ ++  M+  GI PN   Y
Sbjct: 314 -----PPNIVTYSSILDALC----KNHQVDNAIALLTQMKNQGIQPNMYTY 355



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 162/361 (44%), Gaps = 44/361 (12%)

Query: 55  KPDTAAYNAVLNA-CAN---------LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
           KP+T   N ++   C N         +GK K  + LF++M      PDV T+ +++    
Sbjct: 129 KPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFC 188

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
           +  R      VL  ++  GI   + T+ SL+  Y     +  A++I   M +       +
Sbjct: 189 KEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQ-------L 241

Query: 165 IRELDLEDYSSENEGDDDDD--DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
               D++ YS    G       DE  E L            +  K   PN   Y++L+ G
Sbjct: 242 GVSPDIQSYSILINGFCKIKMMDEAMELL----------KEMHHKQIIPNVVTYSSLIDG 291

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
               G++S  ++++  M    D    P+ VTY++++ AL K   +D A  +L +M   G+
Sbjct: 292 LCKSGKISYALKLVDEMH---DRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGI 348

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSA 339
             N  TY IL+KG CQ  +++ A+++  ++        +V +Y ++I GF    L D+  
Sbjct: 349 QPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGH-NLNVYTYTVMIQGFCDKGLFDE-- 405

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKV--DIV 394
            ALT  ++M   G  P   +Y  ++ +     + ++A K+  EM+    D RV +  D++
Sbjct: 406 -ALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLI 464

Query: 395 A 395
           A
Sbjct: 465 A 465



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 126/299 (42%), Gaps = 54/299 (18%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           ++   KP    YN++++    + +  K   +F+ M + G  PD+ +Y+++I         
Sbjct: 204 MIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILIN-------- 255

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                                         GF  +++ +  ++ ++E      +II   +
Sbjct: 256 ------------------------------GFCKIKMMDEAMELLKEMHHK--QIIP--N 281

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +  YSS  +G        +   L + ++   +P        PN   Y++++       +V
Sbjct: 282 VVTYSSLIDGLCKSGKISYALKLVDEMHDRGQP--------PNIVTYSSILDALCKNHQV 333

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            + + +L  M+ Q      P+  TYT ++  L ++G ++ AR+V  ++   G   N  TY
Sbjct: 334 DNAIALLTQMKNQ---GIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTY 390

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
            ++++G+C +   D+A  LL +M D+  I P+  +Y I+I      D++  A     EM
Sbjct: 391 TVMIQGFCDKGLFDEALTLLSKMEDNGCI-PNAKTYEIIILSLFKKDENEMAEKLLCEM 448


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/534 (22%), Positives = 228/534 (42%), Gaps = 63/534 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++ +G  P   AW+ VV    A+GD          DV +  VR+    +      PD  +
Sbjct: 148 LVAAGARPDTFAWNKVVQACVAAGD---------LDVALAMVRRMGRSE--GAPPPDAFS 196

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+      GK    L++FD+M + G  P+ +TYN MI    +         + +++L
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQML 256

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    + T+  L++                  R GR D  +++ + ++  +S   +G 
Sbjct: 257 HDGPKPNIVTYNVLLSGLC---------------RAGRMDETRVLMD-EMASHSMFPDG- 299

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR------IYTT--LMKGYMNEGRVSDT 232
                     +L + +  + E   +   FA + +       YT   L+ G   +G+V+  
Sbjct: 300 ------FTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKA 353

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            ++L  +         P  V Y T+++   +   +  A  +  +M    +  + ITYN L
Sbjct: 354 EQVLEMLVH---TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 410

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C+   + KA++L+ EM + + ++P V ++N LID +          T  ++M+ +G
Sbjct: 411 INGLCKLEMVTKAEDLVMEM-EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG 469

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I    IS+ +++KAF  + +   A  + D+M+    V  +   +N +++ Y   G  E+A
Sbjct: 470 IKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD-VAPNAQVYNSIIDAYIESGDTEQA 528

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             ++E+MK +G   ++ TY  L  G+  + +  EA  L   ++ +               
Sbjct: 529 FLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQ--------------- 573

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
             L+PD    + +   C       KALE++  M ++GI P    Y  +   + S
Sbjct: 574 -GLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALAS 626



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 200/470 (42%), Gaps = 55/470 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVK---RVRK 44
           M+  G +P+   ++T++      GD             DGP  ++  ++V++    R  +
Sbjct: 220 MVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGR 279

Query: 45  FSDPDIVSDSK------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             +  ++ D        PD   Y+ + +     G+ +  L LF +  + G      T ++
Sbjct: 280 MDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSI 339

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--RE 156
           ++    +  +      VLE ++  G+      + +L+  Y    DL  A  I + M  R 
Sbjct: 340 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 157 GRRD----------VCKIIRELDLEDYSSENEGDDDDDD-EVFEKLLPNSINPSSEPPLL 205
            R D          +CK+      ED   E E    D   E F  L    I+       L
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL----IDAYGTAGQL 455

Query: 206 PKTFAPNSRI-----------YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
            K F   S +           + +++K +   G++ + V +L  M  ++     P+   Y
Sbjct: 456 EKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD---VAPNAQVY 512

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
            +++ A +++G  ++A  ++ +M   GV A+ +TYN+LLKG C+  QID+A+EL+  + +
Sbjct: 513 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 572

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
              + PDVVSYN +I       D+  AL    EM   GI PT  +Y TL+ A A + +  
Sbjct: 573 QG-LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVH 631

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
               ++ +ML    V+     + ++V+ Y R     +   + + M E G 
Sbjct: 632 DMECLYQQMLH-KNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 201/442 (45%), Gaps = 41/442 (9%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+ FD+M+E G  P+ +TY V+I+ C +         +  ++    I  C T F  +V +
Sbjct: 369 LEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNI--CPTVF--IVNS 424

Query: 138 YV-GFGDLEIAETIVQAMREGRR-DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNS 195
            + GF  +E  E   +   E    D+  I     L  +  + EG   +   +++K+L   
Sbjct: 425 LIRGFLKVESREEASKLFDEAVACDIANIFTYNSLLSWLCK-EGKMSEATTLWQKMLD-- 481

Query: 196 INPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
                      K  AP    Y +++ G+  +G +     +   M    D    P+ +TY+
Sbjct: 482 -----------KGLAPTKVSYNSMILGHCRQGNLDMAASVFSDML---DCGLKPNVITYS 527

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            ++    K G  + A  V   M    +  +  TYNI + G C+  +  +A+++L++  + 
Sbjct: 528 ILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEK 587

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + P  ++YN ++DGFI     + ALT + EM   G++P  I+YTTL+  F  ++   L
Sbjct: 588 GFV-PVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDL 646

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A K+ +EM R+  +++DI A+  L++G+C+   +E A  +   + + G  PN   Y SL 
Sbjct: 647 ALKMRNEM-RNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLI 705

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           +G         AL L K +        EG++ D      L+    L+D L    ++    
Sbjct: 706 SGYRNLNNMEAALNLQKRM------LGEGISCD------LQTYTTLIDGL----LKEGRL 749

Query: 496 RKALEIVACMEEHGIPPNKTKY 517
             AL++ + M   GI P+   Y
Sbjct: 750 VLALDLYSEMSAKGIIPDIIIY 771



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 187/462 (40%), Gaps = 94/462 (20%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++L+     GK  +   L+ +M + G  P  ++YN MI    R     +   V   +
Sbjct: 455 TYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDM 514

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIRE 167
           L+ G+   + T+  L+  Y   GD E A  +   M +                +CK+ R 
Sbjct: 515 LDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRT 574

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
            + +D   +                            + K F P    Y ++M G++ EG
Sbjct: 575 SEAQDMLKK---------------------------FVEKGFVPVCLTYNSIMDGFIKEG 607

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            VS     L A R   ++   P+ +TYTT+++   K  + D A ++  EM   G+  +  
Sbjct: 608 SVSSA---LTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIA 664

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF--- 344
            Y  L+ G+C++  I+ A  L  E+ D   + P+ V YN LI G+  +++   AL     
Sbjct: 665 AYGALIDGFCKKQDIETASWLFSELLDGG-LSPNSVIYNSLISGYRNLNNMEAALNLQKR 723

Query: 345 --------------------------------FNEMRARGIAPTKISYTTLMKAFALSSQ 372
                                           ++EM A+GI P  I YT L+       Q
Sbjct: 724 MLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQ 783

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            + A K+  EM RD  +  ++  +N L+ G+ + G ++EA R+   M + G  PN  TY 
Sbjct: 784 LENAQKILAEMERDS-ITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYD 842

Query: 433 SLANG------------ISLARKPGEALLLWKEIKERCEVKK 462
            L NG            +SL  K G+ +   K I E+  +KK
Sbjct: 843 ILINGKIKGGNSALKSLLSLKFKDGKGM---KRINEQDSIKK 881



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 161/371 (43%), Gaps = 42/371 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P+V  +S ++     +GD     +  +FD +V       D +IV    P    
Sbjct: 514 MLDCGLKPNVITYSILMDGYFKNGD--TEYAFYVFDRMV-------DENIV----PSDFT 560

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN  +N    +G+  +   +  +  E G  P  LTYN ++    +       +     + 
Sbjct: 561 YNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMC 620

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E G++  + T+ +L+  +    + ++A  +   MR           ELD+  Y +  +G 
Sbjct: 621 ESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGL-------ELDIAAYGALIDGF 673

Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               D +    +F +LL   +             +PNS IY +L+ GY N   +++    
Sbjct: 674 CKKQDIETASWLFSELLDGGL-------------SPNSVIYNSLISGYRN---LNNMEAA 717

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   +R        D  TYTT++  L+K G +  A  + +EM+  G+  + I Y +L+ G
Sbjct: 718 LNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLING 777

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C + Q++ A+++L EM  D+ I P+V  YN LI G     +   A    NEM  +G+ P
Sbjct: 778 LCGKGQLENAQKILAEMERDS-ITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTP 836

Query: 356 TKISYTTLMKA 366
              +Y  L+  
Sbjct: 837 NDTTYDILING 847



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 3/201 (1%)

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
           G ++   D    P   T+T+V+ A VK G+M  A ++  EM   GV  N +    L+KGY
Sbjct: 300 GLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGY 359

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+Q ++  A E   +M ++    P+ V+Y +LI+      + A A   + +M+ + I PT
Sbjct: 360 CKQDKLVSALEFFDKMNENGP-SPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPT 418

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
                +L++ F      + A+K+FDE +       +I  +N L+   C+ G + EA  + 
Sbjct: 419 VFIVNSLIRGFLKVESREEASKLFDEAVACDI--ANIFTYNSLLSWLCKEGKMSEATTLW 476

Query: 417 ERMKENGFYPNVATYGSLANG 437
           ++M + G  P   +Y S+  G
Sbjct: 477 QKMLDKGLAPTKVSYNSMILG 497



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 5/249 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  + RIY  L+  Y+   +++D +   G   R  ++   P       +++ALVK   + 
Sbjct: 170 FDSDIRIYNYLLNSYIKANKLNDAI---GCFNRLVESDIVPWIKFLNFLLTALVKNDMIY 226

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            AR+V  +M   GV  +  T +I+++   +    ++AK+   E A    ++ D  +Y+I+
Sbjct: 227 EAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLE-AKSRGVKLDAAAYSIV 285

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I  F    D   A     +MR +G  P++ ++T+++ A         A ++ DEM+    
Sbjct: 286 IQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMV-SCG 344

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V++++V    LV+GYC+   +  A    ++M ENG  PN  TY  L           +A 
Sbjct: 345 VQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAY 404

Query: 449 LLWKEIKER 457
            L+ ++K +
Sbjct: 405 DLYTQMKNK 413



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 104/244 (42%), Gaps = 36/244 (14%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           H D  T   ++ A +K  + + A++   E    GV  +   Y+I+++ +C+ L ++ A  
Sbjct: 241 HGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACG 300

Query: 308 LLREMAD----------------------------------DAKIEPDVVSYNILIDGFI 333
           LL++M D                                     ++ +VV    L+ G+ 
Sbjct: 301 LLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYC 360

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
             D    AL FF++M   G +P +++Y  L++    +     A  ++ +M ++  +   +
Sbjct: 361 KQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQM-KNKNICPTV 419

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
              N L+ G+ ++   EEA ++ +         N+ TY SL + +    K  EA  LW++
Sbjct: 420 FIVNSLIRGFLKVESREEASKLFDEAVACDI-ANIFTYNSLLSWLCKEGKMSEATTLWQK 478

Query: 454 IKER 457
           + ++
Sbjct: 479 MLDK 482



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 18/229 (7%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN LL  Y +  +++ A      + + + I P +   N L+   +  D    A   + +M
Sbjct: 177 YNYLLNSYIKANKLNDAIGCFNRLVE-SDIVPWIKFLNFLLTALVKNDMIYEAREVYEKM 235

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             +G+     +   +M+A    +  + A K F E  +   VK+D  A++++++ +C+   
Sbjct: 236 VLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEA-KSRGVKLDAAAYSIVIQAFCKNLD 294

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           VE A  +++ M++ G+ P+  T+ S+           EAL L  E+   C V+   V A 
Sbjct: 295 VELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVS-CGVQMNVVVAT 353

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           + +    K D +L+ AL        FF K       M E+G  PN+  Y
Sbjct: 354 TLVKGYCKQD-KLVSAL-------EFFDK-------MNENGPSPNRVTY 387


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 213/503 (42%), Gaps = 49/503 (9%)

Query: 43  RKFSDPDIVSDS--KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           R  S  D++S S  +    AY+A+L   + LG     +  + +M   G +P++L YN +I
Sbjct: 163 RTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVI 222

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR 159
               +         +++++ E  ++    T+ S++  +    DL+ A  +   M +EG  
Sbjct: 223 NALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCE 282

Query: 160 DVCKIIREL--DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP----------- 206
                   L   L D    NE  D   + +   +LP +   +   P++            
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA--HTCTGPIIALCDMGCYEDAW 340

Query: 207 --------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                   K   PN   YT L+ G    G +   +   G   R   +   P+ VTY  ++
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI---GLFHRMSRDGVFPNTVTYNALI 397

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + LV+   +  A  VL  M R G   N +TYN ++KGYC      KA  ++  M      
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH- 456

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
             ++V+YN +I G+    ++  AL   + MR  G  P + SYT L+  F   S+ + A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+EM+ D     + V +  L++GYC+   ++ A  ++E MK +G  PNV TY  L +G+
Sbjct: 517 LFNEMVDDGLCPNE-VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 439 SLARKPGEALLLWKEIKERCEVK-KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +       A       +E C+V  +EG+           P+     A+ D   +      
Sbjct: 576 TKQNNFSGA-------EELCKVMIEEGI----------FPNVVTYTAMIDGLCKNGSTSL 618

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           ALE+   M E G  PN   Y  +
Sbjct: 619 ALEMFNKMIEQGCLPNLLTYSSL 641



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 169/406 (41%), Gaps = 56/406 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   Y A+++     G  K  + LF +M   G  P+ +TYN +I +     R      
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL  +   G +  + T+  ++  Y   GD + A  ++  M                    
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM-------------------- 451

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                         L +  + N   Y T++KGY + G  +  +R
Sbjct: 452 ------------------------------LQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  MR   D    PD  +YT ++    K   M+ A  +  EM   G+  N +TY  L+ 
Sbjct: 482 ILDLMR---DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID 538

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+  ++D A  LL  M   +   P+V +YN+LI G    ++ +GA      M   GI 
Sbjct: 539 GYCKDEKLDTATSLLEHM-KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YT ++     +    LA ++F++M+    +  +++ ++ L+    + G VEEA+ 
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLP-NLLTYSSLIRALGQEGKVEEAEN 656

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCE 459
           +   ++ +G  P+  TY  +     ++ K   A   L + IK  C+
Sbjct: 657 LFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/481 (19%), Positives = 187/481 (38%), Gaps = 60/481 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G  P++  ++ ++      GD  P +++ + + +++R               +   
Sbjct: 416 MGRNGCSPNIVTYNEMIKGYCILGD--PKKAMLVMNNMLQR-----------GHSANLVT 462

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++    + G     L++ D M + G KPD  +Y  +I    + S+      +   ++
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
           + G+     T+ +L+  Y     L+ A ++++ M R G R   +    L        N  
Sbjct: 523 DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 582

Query: 180 DDDDDDEVF--EKLLPNSI-----------NPSSEPPL------LPKTFAPNSRIYTTLM 220
             ++  +V   E + PN +           N S+   L      + +   PN   Y++L+
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
           +    EG+V +   +   + R       PD +TY  ++ A + +G ++ A   L  M + 
Sbjct: 643 RALGQEGKVEEAENLFAELERH---GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA 699

Query: 281 GVPANRITYNILLKGYCQQ-LQIDKAKELLREM--------------------ADDAKIE 319
           G      TY +L+KG   + L  D+    L ++                    A  A+++
Sbjct: 700 GCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELD 759

Query: 320 P--DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           P   V   N L+           A      M ++G+ P + +Y +L+ +        LA 
Sbjct: 760 PGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAM 819

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            VF  M      +V +  +  L+   C++   +EA+   E M    + P+      L +G
Sbjct: 820 GVFKHM-STQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDG 878

Query: 438 I 438
           +
Sbjct: 879 L 879



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 50/386 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG  P+V+ ++ ++  L    +    E  +L  V+++               P+   
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAE--ELCKVMIEE-----------GIFPNVVT 602

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++     G     L++F++M E G  P++LTY+ +I+   +  +      +   + 
Sbjct: 603 YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------IIRELDLED 172
             G+     T+  ++ AY+  G +E A   +  M +     C+        +I+ L  E 
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG---CQPTLWTYGVLIKGLKNEY 719

Query: 173 YSSENEGDDDDDDEVFEKLLPN-------------SINPSSEPPLLPKTFAPNSRIYTTL 219
             +      D        ++PN             S+  +    L P     + ++   L
Sbjct: 720 LLA------DQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP---GLSVQVQNAL 770

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +      GR  +   +LG+M  Q      PD   Y +++ +L++  ++D A  V   M+ 
Sbjct: 771 VSNLSTAGRWFEANELLGSMISQ---GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G   +   Y  L+   CQ  +  +A+     M       PD V   +LIDG +      
Sbjct: 828 QGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT-WNPDDVVQAVLIDGLLRDGYKD 886

Query: 340 GALTFFNEMRARGIAPTKISYTTLMK 365
             + F + M  R   P+   YT L +
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAR 912


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 188/427 (44%), Gaps = 45/427 (10%)

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           LTY +MI+  A       + ++L+++   GI+     F S++ +Y   G  E A      
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYR 136

Query: 154 MREGR-RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
           M++ R +   KI   + L+    EN          F+ + P   N   +         PN
Sbjct: 137 MQDFRVKPTVKIYNHI-LDALLDENR---------FQMINPIYSNMKKD------GMEPN 180

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  L+K      RV    ++L  M  +      PD V+YTT++S+L K G +  AR+
Sbjct: 181 VFTYNILLKALCKNNRVDGAHKLLVEMSSK---GCDPDEVSYTTLISSLCKLGKVKEARE 237

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +    T   VP     YN L+ G C++   ++A +LL EM +   I+P+V+SY  +I+  
Sbjct: 238 LAMSFTP-SVP----VYNALINGVCKEYTFEEAFQLLDEMMNKG-IDPNVISYTTIINAL 291

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
               +   +L    +M ARG +P   ++T+L+K F L      A   +D M+R+  V  +
Sbjct: 292 SDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVP-N 350

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +VA+N L+ G C    + +A  +  +M+ NG  PNV TY +L +G + A     A  +W 
Sbjct: 351 VVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWN 410

Query: 453 -EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
             I   C                  P+      + D+  R + F +A  ++  M+    P
Sbjct: 411 WMITHGCH-----------------PNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCP 453

Query: 512 PNKTKYK 518
           PN   + 
Sbjct: 454 PNTVTFN 460



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 171/395 (43%), Gaps = 22/395 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YNA++N        ++  QL D+M   G  P+V++Y  +I   + A    L + V
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 116 LERILEMGITLCMTTFQSLVAAY-VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           L ++   G +  + TF SL+  + +  G  E  +   + +REG          L     S
Sbjct: 304 LAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCS 363

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             + GD      VF ++  N                PN R Y+ L+ GY   G +     
Sbjct: 364 KRSLGDAVS---VFNQMEINGC-------------CPNVRTYSALIDGYAKAGDLDGASE 407

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M        HP+ V YT +V  L +    ++A  ++  M     P N +T+N  +K
Sbjct: 408 VWNWMITH---GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIK 464

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C   ++D A ++  +M +     P+  +YN L+D  +       A     +M  RGI 
Sbjct: 465 GLCGSGRVDWAIKVFDQMGNSGCF-PNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              ++Y T++  +  +     A ++  +M+     K D +  N++++ YC+ G V  A +
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRG-TKPDAITVNIVIDAYCKQGKVNIAIQ 582

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           +++R+    ++P++  Y SL +GI       EA++
Sbjct: 583 LMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIV 617



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 180/409 (44%), Gaps = 37/409 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RASRKHL 111
           KP    YN +L+A  +  + +    ++  M + G +P+V TYN+++K LC   R    H 
Sbjct: 143 KPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHK 202

Query: 112 LVFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
           L      ++EM    C     ++ +L+++    G ++ A  +  +          +I  +
Sbjct: 203 L------LVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGV 256

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
             ++Y+ E         E F+ L            ++ K   PN   YTT++    + G 
Sbjct: 257 -CKEYTFE---------EAFQLL----------DEMMNKGIDPNVISYTTIINALSDAGN 296

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V  ++ +L  M  +      P+  T+T+++      G    A      M R GV  N + 
Sbjct: 297 VELSLAVLAKMFAR---GCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVA 353

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN L+ G C +  +  A  +  +M  +    P+V +Y+ LIDG+    D  GA   +N M
Sbjct: 354 YNALMHGLCSKRSLGDAVSVFNQMEINGCC-PNVRTYSALIDGYAKAGDLDGASEVWNWM 412

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
              G  P  ++YT ++     +S    A  + + M +      + V +N  ++G C  G 
Sbjct: 413 ITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENM-QVENCPPNTVTFNTFIKGLCGSGR 471

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           V+ A ++ ++M  +G +PN  TY  L + +   R+ GEA  L K+++ R
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHR 520



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 193/452 (42%), Gaps = 47/452 (10%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           G  ++ L+ F +M +F  KP V  YN ++      +R  ++  +   + + G+   + T+
Sbjct: 125 GSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTY 184

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
             L+ A                       +CK  R         E      D DEV    
Sbjct: 185 NILLKA-----------------------LCKNNRVDGAHKLLVEMSSKGCDPDEVSYTT 221

Query: 192 LPNS---INPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
           L +S   +    E   L  +F P+  +Y  L+ G   E    +  ++L  M  +      
Sbjct: 222 LISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNK---GID 278

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+ ++YTT+++AL  AG+++ +  VLA+M   G   N  T+  L+KG+  +    +A + 
Sbjct: 279 PNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDF 338

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
              M  +  + P+VV+YN L+ G         A++ FN+M   G  P   +Y+ L+  +A
Sbjct: 339 WDRMIREGVV-PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYA 397

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +     A++V++ M+       ++VA+  +V+  CR  +  +A  +IE M+     PN 
Sbjct: 398 KAGDLDGASEVWNWMITHG-CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNT 456

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            T+ +   G+  + +   A+ ++ ++             +S   P      ELLD+L   
Sbjct: 457 VTFNTFIKGLCGSGRVDWAIKVFDQM------------GNSGCFPNTTTYNELLDSL--- 501

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            ++   F +A  +V  ME  GI  N   Y  I
Sbjct: 502 -LKDRRFGEAFGLVKDMEHRGIELNLVTYNTI 532


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 213/503 (42%), Gaps = 49/503 (9%)

Query: 43  RKFSDPDIVSDS--KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           R  S  D++S S  +    AY+A+L   + LG     +  + +M   G +P++L YN +I
Sbjct: 163 RTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVI 222

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR 159
               +         +++++ E  ++    T+ S++  +    DL+ A  +   M +EG  
Sbjct: 223 NALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCE 282

Query: 160 DVCKIIREL--DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP----------- 206
                   L   L D    NE  D   + +   +LP +   +   P++            
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA--HTCTGPIIALCDMGCYEDAW 340

Query: 207 --------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                   K   PN   YT L+ G    G +   +   G   R   +   P+ VTY  ++
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI---GLFHRMSRDGVFPNTVTYNALI 397

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + LV+   +  A  VL  M R G   N +TYN ++KGYC      KA  ++  M      
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH- 456

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
             ++V+YN +I G+    ++  AL   + MR  G  P + SYT L+  F   S+ + A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+EM+ D     + V +  L++GYC+   ++ A  ++E MK +G  PNV TY  L +G+
Sbjct: 517 LFNEMVDDGLCPNE-VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 439 SLARKPGEALLLWKEIKERCEVK-KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +           +   +E C+V  +EG+           P+     A+ D   +      
Sbjct: 576 TKQNN-------FSGAEELCKVMIEEGI----------FPNVVTYTAMIDGLCKNGSTSL 618

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           ALE+   M E G  PN   Y  +
Sbjct: 619 ALEMFNKMIEQGCLPNLLTYSSL 641



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 169/406 (41%), Gaps = 56/406 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   Y A+++     G  K  + LF +M   G  P+ +TYN +I +     R      
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL  +   G +  + T+  ++  Y   GD + A  ++  M                    
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM-------------------- 451

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                         L +  + N   Y T++KGY + G  +  +R
Sbjct: 452 ------------------------------LQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  MR   D    PD  +YT ++    K   M+ A  +  EM   G+  N +TY  L+ 
Sbjct: 482 ILDLMR---DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID 538

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+  ++D A  LL  M   +   P+V +YN+LI G    ++ +GA      M   GI 
Sbjct: 539 GYCKDEKLDTATSLLEHM-KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YT ++     +    LA ++F++M+    +  +++ ++ L+    + G VEEA+ 
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLP-NLLTYSSLIRALGQEGKVEEAEN 656

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCE 459
           +   ++ +G  P+  TY  +     ++ K   A   L + IK  C+
Sbjct: 657 LFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/481 (19%), Positives = 187/481 (38%), Gaps = 60/481 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G  P++  ++ ++      GD  P +++ + + +++R               +   
Sbjct: 416 MGRNGCSPNIVTYNEMIKGYCILGD--PKKAMLVMNNMLQR-----------GHSANLVT 462

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++    + G     L++ D M + G KPD  +Y  +I    + S+      +   ++
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
           + G+     T+ +L+  Y     L+ A ++++ M R G R   +    L        N  
Sbjct: 523 DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 582

Query: 180 DDDDDDEVF--EKLLPNSI-----------NPSSEPPL------LPKTFAPNSRIYTTLM 220
             ++  +V   E + PN +           N S+   L      + +   PN   Y++L+
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
           +    EG+V +   +   + R       PD +TY  ++ A + +G ++ A   L  M + 
Sbjct: 643 RALGQEGKVEEAENLFAELERH---GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA 699

Query: 281 GVPANRITYNILLKGYCQQ-LQIDKAKELLREM--------------------ADDAKIE 319
           G      TY +L+KG   + L  D+    L ++                    A  A+++
Sbjct: 700 GCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELD 759

Query: 320 P--DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           P   V   N L+           A      M ++G+ P + +Y +L+ +        LA 
Sbjct: 760 PGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAM 819

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            VF  M      +V +  +  L+   C++   +EA+   E M    + P+      L +G
Sbjct: 820 GVFKHM-STQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDG 878

Query: 438 I 438
           +
Sbjct: 879 L 879



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 50/386 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG  P+V+ ++ ++  L    +    E  +L  V+++               P+   
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAE--ELCKVMIEE-----------GIFPNVVT 602

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++     G     L++F++M E G  P++LTY+ +I+   +  +      +   + 
Sbjct: 603 YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------IIRELDLED 172
             G+     T+  ++ AY+  G +E A   +  M +     C+        +I+ L  E 
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG---CQPTLWTYGVLIKGLKNEY 719

Query: 173 YSSENEGDDDDDDEVFEKLLPN-------------SINPSSEPPLLPKTFAPNSRIYTTL 219
             +      D        ++PN             S+  +    L P     + ++   L
Sbjct: 720 LLA------DQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGL---SVQVQNAL 770

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +      GR  +   +LG+M  Q      PD   Y +++ +L++  ++D A  V   M+ 
Sbjct: 771 VSNLSTAGRWFEANELLGSMISQ---GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G   +   Y  L+   CQ  +  +A+     M       PD V   +LIDG +      
Sbjct: 828 QGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT-WNPDDVVQAVLIDGLLRDGYKD 886

Query: 340 GALTFFNEMRARGIAPTKISYTTLMK 365
             + F + M  R   P+   YT L +
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAR 912


>gi|326492636|dbj|BAJ90174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 631

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 205/448 (45%), Gaps = 23/448 (5%)

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQ 132
           KP +   LF  + + G +P ++TY  ++           +  +L  +   G+      F 
Sbjct: 79  KPHQAQDLFGHLADEGHRPSLVTYTTLLTAVTNQRAFEAIPSLLAGMDAAGLRPDAIFFN 138

Query: 133 SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL 192
           +L+ ++V  G +  A +    M          I   +         G  D+   +F+ + 
Sbjct: 139 ALINSFVEAGRMGEATSTFWKMSRHHPGCRPTISTFNTLIKGFGIAGRPDESQRIFDMMA 198

Query: 193 PNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
               +   +   +  T  PN   Y  L+K + +  R+ +   ++G MR +      PD V
Sbjct: 199 GGDGDGDRD--RVASTVRPNLTTYNILVKAWCDHRRLEEAWGVVGRMRAR---GVEPDVV 253

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TY TV SA  K     RA +++ EM R  +  +  T+ I++ GYC++ ++++A   +R+M
Sbjct: 254 TYNTVASAYAKNDETWRAEELVVEMVRARLRTSERTWGIIVGGYCREGRLEEALRCVRQM 313

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
             DA + P+V+ +N L+ GF+  +D+A A      M   GI P  ++Y+  + AF+    
Sbjct: 314 -KDAGVLPNVIVFNTLLKGFLDANDTAAADDVLGLMEHFGIKPDIVTYSHQLNAFSSLGH 372

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
               +KVFD+M+ +  ++ D   +++L +G+ R     +A+ ++ERM   G  PNV T+ 
Sbjct: 373 MAKCSKVFDKMV-EAGIEPDPQVYSILAKGHVRAQQPGKAEELLERMCRLGVRPNVVTFT 431

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           ++ +G         A  ++++++            D+ + P L+  E L+   ++     
Sbjct: 432 TVISGWCSVADMDNATRVYRKMR------------DAGVRPNLRTFETLIWGYSE----Q 475

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
               KA E++  M+E GI P ++ Y  +
Sbjct: 476 KQPWKAEEVLQMMQEAGIRPKQSTYSLV 503



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 177/412 (42%), Gaps = 57/412 (13%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P +  ++T++     +G   P ES ++FD++           + S  +P+   YN +
Sbjct: 166 GCRPTISTFNTLIKGFGIAGR--PDESQRIFDMMAGGDGDGDRDRVASTVRPNLTTYNIL 223

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           + A  +  + ++   +  +M   G +PDV+TYN +    A+         ++  ++   +
Sbjct: 224 VKAWCDHRRLEEAWGVVGRMRARGVEPDVVTYNTVASAYAKNDETWRAEELVVEMVRARL 283

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+  +V  Y   G LE A   V+ M++                            
Sbjct: 284 RTSERTWGIIVGGYCREGRLEEALRCVRQMKDA--------------------------- 316

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                 +LPN I                  ++ TL+KG+++    +    +LG M   E 
Sbjct: 317 -----GVLPNVI------------------VFNTLLKGFLDANDTAAADDVLGLM---EH 350

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD VTY+  ++A    G M +  +V  +M   G+  +   Y+IL KG+ +  Q  K
Sbjct: 351 FGIKPDIVTYSHQLNAFSSLGHMAKCSKVFDKMVEAGIEPDPQVYSILAKGHVRAQQPGK 410

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A+ELL  M     + P+VV++  +I G+  + D   A   + +MR  G+ P   ++ TL+
Sbjct: 411 AEELLERMC-RLGVRPNVVTFTTVISGWCSVADMDNATRVYRKMRDAGVRPNLRTFETLI 469

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             ++   QP  A +V  +M+++  ++     ++++ + +  +GLV+ A R +
Sbjct: 470 WGYSEQKQPWKAEEVL-QMMQEAGIRPKQSTYSLVADAWKAVGLVKNANRTV 520



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 174/400 (43%), Gaps = 43/400 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQM--HEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +PD   +NA++N+    G+  +    F +M  H  G +P + T+N +IK    A R    
Sbjct: 131 RPDAIFFNALINSFVEAGRMGEATSTFWKMSRHHPGCRPTISTFNTLIKGFGIAGRPD-- 188

Query: 113 VFVLERILEM---------------GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
               +RI +M                +   +TT+  LV A+     LE A  +V  MR  
Sbjct: 189 --ESQRIFDMMAGGDGDGDRDRVASTVRPNLTTYNILVKAWCDHRRLEEAWGVVGRMRA- 245

Query: 158 RRDVCKIIRELDLEDYSSENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
            R V     E D+  Y++       +D+    E+L+           ++      + R +
Sbjct: 246 -RGV-----EPDVVTYNTVASAYAKNDETWRAEELVVE---------MVRARLRTSERTW 290

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++ GY  EGR+ + +R    +R+ +D    P+ + + T++   + A     A  VL  
Sbjct: 291 GIIVGGYCREGRLEEALR---CVRQMKDAGVLPNVIVFNTLLKGFLDANDTAAADDVLGL 347

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  + +TY+  L  +     + K  ++  +M + A IEPD   Y+IL  G +   
Sbjct: 348 MEHFGIKPDIVTYSHQLNAFSSLGHMAKCSKVFDKMVE-AGIEPDPQVYSILAKGHVRAQ 406

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A      M   G+ P  +++TT++  +   +    A +V+ +M RD  V+ ++  +
Sbjct: 407 QPGKAEELLERMCRLGVRPNVVTFTTVISGWCSVADMDNATRVYRKM-RDAGVRPNLRTF 465

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             L+ GY       +A+ +++ M+E G  P  +TY  +A+
Sbjct: 466 ETLIWGYSEQKQPWKAEEVLQMMQEAGIRPKQSTYSLVAD 505



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 16/205 (7%)

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF----ALSSQPKLAN 377
           VVS    + G I       A   F  +   G  P+ ++YTTL+ A     A  + P L  
Sbjct: 64  VVSRTREMRGLIDAKKPHQAQDLFGHLADEGHRPSLVTYTTLLTAVTNQRAFEAIPSLLA 123

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN--GFYPNVATYGSLA 435
            +    LR      D + +N L+  +   G + EA     +M  +  G  P ++T+ +L 
Sbjct: 124 GMDAAGLRP-----DAIFFNALINSFVEAGRMGEATSTFWKMSRHHPGCRPTISTFNTLI 178

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
            G  +A +P E+  ++  +            A S + P L     L+ A  D        
Sbjct: 179 KGFGIAGRPDESQRIFDMMAGGDGDGDRDRVA-STVRPNLTTYNILVKAWCD----HRRL 233

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            +A  +V  M   G+ P+   Y  +
Sbjct: 234 EEAWGVVGRMRARGVEPDVVTYNTV 258


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 193/400 (48%), Gaps = 22/400 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  +   ++N     G+P++   +F+ + E G KP ++TY  ++    R    H L+ ++
Sbjct: 341 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 400

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSS 175
            ++ + G+      F +++ A    G+L+ A  I + M+E G +        L ++ Y  
Sbjct: 401 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTL-IKGYGK 459

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  ++   + + +L + +              PN R    L++ + N+ ++ +   +
Sbjct: 460 --IGKLEESSRLLDMMLRDEM------------LQPNDRTCNILVQAWCNQRKIEEAWNI 505

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR-QVLAEMTRIGVPANRITYNILLK 294
           +  M   +     PD VT+ T+  A  + GS   A   ++  M    V  N  T   ++ 
Sbjct: 506 VYKM---QSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVN 562

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC++ ++++A      M  +  + P++  +N LI GF+ I+D  G     + M   G+ 
Sbjct: 563 GYCEEGKMEEALRFFYRM-KELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVK 621

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++++TLM A++     K   +++ +ML +  +  DI A+++L +GY R G  E+A++
Sbjct: 622 PDVVTFSTLMNAWSSVGDMKRCEEIYTDML-EGGIDPDIHAFSILAKGYARAGEPEKAEQ 680

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           I+ +M++ G  PNV  Y  + +G   A +  +A+ ++K++
Sbjct: 681 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 720



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 24/337 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ +   P+   YTTL+     +        +L  + + E N   PD + +  +++A  +
Sbjct: 368 LIEEGHKPSLITYTTLVTALTRQKHFHS---LLSLISKVEKNGLKPDTILFNAIINASSE 424

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           +G++D+A ++  +M   G      T+N L+KGY +  +++++  LL  M  D  ++P+  
Sbjct: 425 SGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDR 484

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDE 382
           + NIL+  +        A     +M++ G+ P  +++ TL KA+A + S     + +   
Sbjct: 485 TCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPR 544

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG---IS 439
           ML + +VK ++     +V GYC  G +EEA R   RMKE G +PN+  + SL  G   I+
Sbjct: 545 MLHN-KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 603

Query: 440 LARKPGEALLLWKEIKERCEVKKEG--VNADSD--------------LPPPLKPDEELLD 483
                GE + L +E   + +V      +NA S               L   + PD     
Sbjct: 604 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFS 663

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            LA    RA    KA +I+  M + G+ PN   Y +I
Sbjct: 664 ILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQI 700



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 107/518 (20%), Positives = 221/518 (42%), Gaps = 49/518 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+V+ L            K F  ++  + K     +    KPDT  
Sbjct: 368 LIEEGHKPSLITYTTLVTALTRQ---------KHFHSLLSLISKVEKNGL----KPDTIL 414

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR-----ASRKHLLVFV 115
           +NA++NA +  G   + +++F++M E G KP   T+N +IK   +      S + L + +
Sbjct: 415 FNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 474

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYS 174
            + +L+     C      LV A+     +E A  IV  M+  G +    ++    L    
Sbjct: 475 RDEMLQPNDRTC----NILVQAWCNQRKIEEAWNIVYKMQSYGVKP--DVVTFNTLAKAY 528

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +        +D +  ++L N +              PN R   T++ GY  EG++ + +R
Sbjct: 529 ARIGSTCTAEDMIIPRMLHNKVK-------------PNVRTCGTIVNGYCEEGKMEEALR 575

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                 R ++   HP+   + +++   +    MD   +V+  M   GV  + +T++ L+ 
Sbjct: 576 FF---YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 632

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +     + + +E+  +M +   I+PD+ +++IL  G+    +   A    N+MR  G+ 
Sbjct: 633 AWSSVGDMKRCEEIYTDMLEGG-IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVR 691

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  + YT ++  +  + + K A +V+ +M     +  ++  +  L+ G+       +A+ 
Sbjct: 692 PNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEE 751

Query: 415 IIERMKENGFYPNVATYGSLANGISL--ARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           +++ M+     P   T   +A+G          +A  L        ++      A S  P
Sbjct: 752 LLKDMEGKNVVPTRKTMQLIADGWKSIGVSNSNDANTLGSSFSTSSKLNIPNNIASSRSP 811

Query: 473 PPLKPDEELLDALADICVRAAF-FRKALEIVACMEEHG 509
             LK   E       +C+++ F  R+ L +V C ++ G
Sbjct: 812 LFLKGMPE----KPKLCIKSQFGLRQTLLVVLCRDQIG 845


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 200/462 (43%), Gaps = 50/462 (10%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR--KHLLVFVLE 117
            YNA++ ACA     +K L L  +M   G   D + Y+ +I+   R ++    +L  +  
Sbjct: 186 TYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYA 245

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------RDVCKIIRELDLE 171
            I    I L       ++  +   GD+  A + + AM +G         +  +I  L   
Sbjct: 246 EIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFL-AMVQGNGLSPKTATLVAVITALG-- 302

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                N G  ++ + +FE+L         E  L+P+T     R Y  L+KGY+  G + D
Sbjct: 303 -----NAGRTEEAEAIFEEL--------KEGGLMPRT-----RAYNALLKGYVKTGSLKD 344

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              ++  M R   +   PD  TY+ ++ A   AG  + AR VL EM   GV  N   ++ 
Sbjct: 345 AESIVSEMER---SGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSR 401

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           +L  Y  + +  K+ ++LREM +   + PD   YN++ID F   +    AL  F+ MR  
Sbjct: 402 ILASYRDRGKWQKSFQVLREMRNSG-VSPDRHFYNVMIDTFGKCNCLDHALATFDRMRME 460

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P  +++ TL+     S     A ++F+ M ++         +N+++  +      E+
Sbjct: 461 GVQPDAVTWNTLIDCHCKSGHHNKAEELFEAM-QESGCSPCTTTYNIMINSFGEQERWED 519

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
            K ++ +M+  G   NV TY +L   + +  + G     +K+  E  EV K         
Sbjct: 520 VKTLLGKMQSQGLLANVVTYTTL---VDIYGQSGR----FKDAIECLEVMKS-------- 564

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
              LKP   + +AL +   +     +A+     M   G+ P+
Sbjct: 565 -VGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPS 605



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 185/458 (40%), Gaps = 36/458 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D    N ++   A  G   + +     +   G  P   T   +I     A R      + 
Sbjct: 255 DGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIF 314

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E + E G+      + +L+  YV  G L+ AE+IV  M        +    L ++ Y+  
Sbjct: 315 EELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYA-- 372

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
           N G  +    V +++  + + P             NS +++ ++  Y + G+   + ++L
Sbjct: 373 NAGRWESARIVLKEMEASGVRP-------------NSYVFSRILASYRDRGKWQKSFQVL 419

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             MR   ++   PD   Y  ++    K   +D A      M   GV  + +T+N L+  +
Sbjct: 420 REMR---NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCH 476

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+    +KA+EL   M  ++   P   +YNI+I+ F   +      T   +M+++G+   
Sbjct: 477 CKSGHHNKAEELFEAM-QESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLAN 535

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++YTTL+  +  S + K A +   E+++   +K     +N L+  Y + GL E+A    
Sbjct: 536 VVTYTTLVDIYGQSGRFKDAIECL-EVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAF 594

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
             M+ +G  P+V    SL N     R+  EA  + + +KE                  LK
Sbjct: 595 RVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKEN----------------DLK 638

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           PD      L    +R   F K   +   M   G  P++
Sbjct: 639 PDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDR 676



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 96/463 (20%), Positives = 186/463 (40%), Gaps = 76/463 (16%)

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           L Y+++I    R+ + +    + +R      TL   T+ +L+ A     DLE A  ++  
Sbjct: 155 LLYSILIHALGRSEKLYEAFLLSQRQ-----TLTPLTYNALIGACARNDDLEKALNLMSR 209

Query: 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
           MR        +     ++  +  N+ D     +++ ++  + I               + 
Sbjct: 210 MRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIEL-------------DG 256

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
           ++   ++ G+   G V+  +  L  +   + N   P   T   V++AL  AG  + A  +
Sbjct: 257 QLLNDIIVGFAKSGDVNRAMSFLAMV---QGNGLSPKTATLVAVITALGNAGRTEEAEAI 313

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF- 332
             E+   G+      YN LLKGY +   +  A+ ++ EM + +   PD  +Y++LID + 
Sbjct: 314 FEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEM-ERSGFSPDEHTYSLLIDAYA 372

Query: 333 ----------ILIDDSAG------------------------ALTFFNEMRARGIAPTKI 358
                     +L +  A                         +     EMR  G++P + 
Sbjct: 373 NAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRH 432

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            Y  ++  F   +    A   FD M R   V+ D V WN L++ +C+ G   +A+ + E 
Sbjct: 433 FYNVMIDTFGKCNCLDHALATFDRM-RMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEA 491

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC-EVKKEGVNADSDLPPPLKP 477
           M+E+G  P   TY  + N      +       W+++K    +++ +G+ A+         
Sbjct: 492 MQESGCSPCTTTYNIMINSFGEQER-------WEDVKTLLGKMQSQGLLANV-------- 536

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  L DI  ++  F+ A+E +  M+  G+ P+ T Y  +
Sbjct: 537 --VTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNAL 577



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 149/383 (38%), Gaps = 55/383 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T AYNA+L      G  K    +  +M   G  PD  TY+++I   A A R      V
Sbjct: 324 PRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIV 383

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G+      F  ++A+Y   G  + +  +++ MR                    
Sbjct: 384 LKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR-------------------- 423

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            N G                              +P+   Y  ++  +   G+ +     
Sbjct: 424 -NSG-----------------------------VSPDRHFYNVMIDTF---GKCNCLDHA 450

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    R       PD VT+ T++    K+G  ++A ++   M   G      TYNI++  
Sbjct: 451 LATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINS 510

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           + +Q + +  K LL +M     +  +VV+Y  L+D +        A+     M++ G+ P
Sbjct: 511 FGEQERWEDVKTLLGKMQSQGLL-ANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKP 569

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           +   Y  L+ A+A     + A   F  ++R   +K  ++  N L+  +       EA  +
Sbjct: 570 SSTMYNALINAYAQRGLSEQAINAF-RVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSV 628

Query: 416 IERMKENGFYPNVATYGSLANGI 438
           ++ MKEN   P+V TY +L   +
Sbjct: 629 LQYMKENDLKPDVVTYTTLMKAL 651



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 149/367 (40%), Gaps = 32/367 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG+ P    +S ++    A  + G  ES +   +V+K +         S  +P++  
Sbjct: 352 MERSGFSPDEHTYSLLID---AYANAGRWESAR---IVLKEME-------ASGVRPNSYV 398

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++ +L +  + GK +K  Q+  +M   G  PD   YNVMI    + +     +   +R+ 
Sbjct: 399 FSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMR 458

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     T+ +L+  +   G    AE + +AM+E     C     + +  +  +   +
Sbjct: 459 MEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWE 518

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           D       + LL           +  +    N   YTTL+  Y   GR  D +  L  M+
Sbjct: 519 D------VKTLLGK---------MQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMK 563

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   P    Y  +++A  + G  ++A      M   G+  + +  N L+  + +  
Sbjct: 564 SV---GLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDR 620

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +  +A  +L+ M ++  ++PDVV+Y  L+   I ++        + EM   G  P + + 
Sbjct: 621 RDAEAFSVLQYMKEN-DLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKAR 679

Query: 361 TTLMKAF 367
             L  A 
Sbjct: 680 AMLRSAL 686



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 114/281 (40%), Gaps = 61/281 (21%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA--KELL 309
           +TY  ++ A  +   +++A  +++ M R G P++ + Y+ +++   +  + D +  +++ 
Sbjct: 185 LTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIY 244

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            E+  D KIE D    N +I GF    D   A++F   ++  G++P   +   ++ A   
Sbjct: 245 AEIESD-KIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGN 303

Query: 370 SSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
           + + + A  +F+E+      PR +    A+N L++GY + G +++A+ I+  M+ +GF  
Sbjct: 304 AGRTEEAEAIFEELKEGGLMPRTR----AYNALLKGYVKTGSLKDAESIVSEMERSGF-- 357

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
                                                             PDE     L 
Sbjct: 358 -------------------------------------------------SPDEHTYSLLI 368

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           D    A  +  A  ++  ME  G+ PN   + +I      R
Sbjct: 369 DAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDR 409


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 212/496 (42%), Gaps = 66/496 (13%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D    + ++ AC   G+ ++  + F +  E G K D   Y+++I+   +    +L + +L
Sbjct: 219 DHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELL 278

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E + E G      TF S++ A V  G++  A  + + M    + +  ++    ++ Y + 
Sbjct: 279 EEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCA- 337

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +G+ D    +F K+  + +              PN   Y+ L++G  N G +     + 
Sbjct: 338 -QGNLDSALNLFNKITEDGL-------------FPNKVTYSVLIEGCCNSGNIEKASELY 383

Query: 237 GAMRRQ----------------------EDNASHPDHV---------TYTTVVSALVKAG 265
             M+                        E+ +   D           TY  ++S L K G
Sbjct: 384 TQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGG 443

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVS 324
            MD A  +L  M   G+  N ++YN ++ G+C++  +D A  +  +M A D K  P+VV+
Sbjct: 444 KMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLK--PNVVT 501

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y+ILIDG     DS  AL  F++M +  IAPT  ++ T++       Q   A       L
Sbjct: 502 YSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFL 561

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
            +  +    + +N +V+G+ + G ++ A  +   M E G  PNV TY SL NG   + + 
Sbjct: 562 EEGFIP-SCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRI 620

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
             AL      K R E++++G          L+ D     AL D   +      A ++   
Sbjct: 621 DLAL------KTRDEMREKG----------LELDVTAYSALIDGFCKRRDMESAQDLFFE 664

Query: 505 MEEHGIPPNKTKYKKI 520
           + E G+ PN+  Y  +
Sbjct: 665 LLEVGLSPNRIVYNSM 680



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 195/470 (41%), Gaps = 87/470 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP------------------------ 91
           P+   Y+ ++  C N G  +K  +L+ QM   G  P                        
Sbjct: 358 PNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKL 417

Query: 92  ----------DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
                     ++ TYN+M+    +  +      +L+ ++  G+   + ++  ++  +   
Sbjct: 418 FDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRK 477

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
           G++++A ++   M    RD+   +    +    +  +GD +   ++F+++L  +I     
Sbjct: 478 GNMDMASSVFSDMLA--RDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNI----- 530

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                   AP    + T++ G    G++S+    L     +      P  +TY ++V   
Sbjct: 531 --------APTDFTFNTIINGLCKVGQMSEARDKLKNFLEE---GFIPSCMTYNSIVDGF 579

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
           +K G++D A  V  EM   GV  N +TY  L+ G+C+  +ID A +   EM +   +E D
Sbjct: 580 IKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG-LELD 638

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF--------ALSSQP 373
           V +Y+ LIDGF    D   A   F E+   G++P +I Y +++  F        AL    
Sbjct: 639 VTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYK 698

Query: 374 KLAN-----------KVFDEMLRDPRVKV---------------DIVAWNMLVEGYCRMG 407
           K+ N            + D +L++ R+                 DI+ +++LV G C  G
Sbjct: 699 KMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKG 758

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +E A++I+E M      P+V  Y +L  G        EA  L  E+ +R
Sbjct: 759 QLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDR 808



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 180/437 (41%), Gaps = 68/437 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P+V +++ ++      G+     SV            FSD  +  D KP+   
Sbjct: 455 MVNQGMVPNVVSYNDMILGHCRKGNMDMASSV------------FSDM-LARDLKPNVVT 501

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++     G  +K L LFDQM      P   T+N +I    +  +       L+  L
Sbjct: 502 YSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFL 561

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G      T+ S+V  ++  G+++ A  +        R++C+                 
Sbjct: 562 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVY-------REMCEF---------------- 598

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                        +PN   YT+L+ G+    R+   ++    MR
Sbjct: 599 ---------------------------GVSPNVVTYTSLINGFCKSNRIDLALKTRDEMR 631

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +       D   Y+ ++    K   M+ A+ +  E+  +G+  NRI YN ++ G+    
Sbjct: 632 EK---GLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLN 688

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++ A    ++M +D +I  D+ +Y  LIDG +       A   + EM ++GI P  I++
Sbjct: 689 NMEAALVWYKKMIND-RIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITF 747

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+       Q + A K+ +EM R   +   ++ +N L+ GY R G ++EA  + + M 
Sbjct: 748 HVLVNGLCNKGQLENARKILEEMDRK-NMTPSVLIYNTLIAGYFREGNLKEAFTLHDEML 806

Query: 421 ENGFYPNVATYGSLANG 437
           + G  P+  TY  L NG
Sbjct: 807 DRGLVPDDVTYDILING 823



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 121/247 (48%), Gaps = 5/247 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  + R++  L+  Y+   R+ + +    AM  Q+     P       +++ALV+   + 
Sbjct: 146 FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVP---YMNILLTALVRRNMIG 202

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
             R +  +M   G+  +  T +++++   ++ ++++A+E  RE  +   ++ D  +Y+I+
Sbjct: 203 ELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERG-VKLDAGAYSII 261

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I       +S   L    EM+ RG  P++ ++T+++ A         A ++ +EM+   +
Sbjct: 262 IQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGK 321

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
             +++V    L++GYC  G ++ A  +  ++ E+G +PN  TY  L  G   +    +A 
Sbjct: 322 -PMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKAS 380

Query: 449 LLWKEIK 455
            L+ ++K
Sbjct: 381 ELYTQMK 387



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 30/224 (13%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP----TKISYTTLMKAFALSSQP 373
            E D   +N L++ +I  +    A+  FN M  + + P      I  T L++   +    
Sbjct: 146 FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELR 205

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
            L NK+   +LR   +  D    +++V    + G VEEA+      KE G   +   Y  
Sbjct: 206 DLYNKM---VLRG--IYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSI 260

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVN--------ADSDLPPPLKPDEELLDA- 484
           +   +         L L +E+KER  V  E           A  ++   L+  EE+++  
Sbjct: 261 IIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCG 320

Query: 485 -----------LADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                      +   C +      AL +   + E G+ PNK  Y
Sbjct: 321 KPMNLVVATSLMKGYCAQGN-LDSALNLFNKITEDGLFPNKVTY 363


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 193/470 (41%), Gaps = 77/470 (16%)

Query: 8   PHVKAWSTVVSRLAASGDDG---------PVESVKLFDVVVKRVRKFSDPDIVS------ 52
           P+ +  + ++ RLA +   G         PV +V  F++V+  + K  + ++V       
Sbjct: 167 PNTRTCNHILLRLARNRQGGLVRRLFDLLPVPNVFTFNIVIDFLCK--EGELVEARALFV 224

Query: 53  -----DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107
                   PD   YN++++     G  ++  QL  +M + G   DV+TYN +I   ++  
Sbjct: 225 RMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFG 284

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
           R          +   G+   + TF + V A+   G ++ A  +   MR            
Sbjct: 285 RMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMR------------ 332

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                                                  +   PN   YT+L+ G    G
Sbjct: 333 --------------------------------------VRGMMPNEFTYTSLVDGTCKAG 354

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ D + +L  M  Q      P+ VTYT +V  L K G +  A  VL+ M R GV AN +
Sbjct: 355 RLDDAIVLLDEMVHQ---GLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANEL 411

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            Y  L+ G+      ++A +LL +M +   +E DV  Y  LI G         A +  ++
Sbjct: 412 LYTTLIHGHFMNNNSERALDLLNQMKNKG-MELDVSLYGTLIWGLCKDQKVDEAKSLLHK 470

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M   G+ P  + YTT+M A   + +   A  +  ++L D   + ++V +  L++G C+ G
Sbjct: 471 MAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKIL-DSGFQPNVVTYCALIDGLCKAG 529

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            + EA     +M+E G  PNV  Y +L +G        +A+ L  E+ ++
Sbjct: 530 SISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDK 579



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 209/521 (40%), Gaps = 96/521 (18%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVK---RVRKFSDPDIVSDSKPDTA 59
           R   LP V    T++S LA  G         L D  V+   RVR+   P       P+T 
Sbjct: 129 RRSALPSV--VDTLLSLLADHG---------LLDDAVRALARVRQLRVP-------PNTR 170

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
             N +L   A   +     +LFD +      P+V T+N++I    +         +  R+
Sbjct: 171 TCNHILLRLARNRQGGLVRRLFDLL----PVPNVFTFNIVIDFLCKEGELVEARALFVRM 226

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
             MG +  + T+ SL+  Y   GDLE  E +V  MR+                       
Sbjct: 227 KAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRK----------------------- 263

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                         A +   Y  L+  +   GR+       G M
Sbjct: 264 ---------------------------SGCAADVVTYNALINCFSKFGRMEKAYSYFGEM 296

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +RQ   A   + VT++T V A  K G +  A ++ A+M   G+  N  TY  L+ G C+ 
Sbjct: 297 KRQGVVA---NVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKA 353

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++D A  LL EM     + P+VV+Y +++DG       A A    + M   G+   ++ 
Sbjct: 354 GRLDDAIVLLDEMVHQGLV-PNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELL 412

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YTTL+    +++  + A  + ++M ++  +++D+  +  L+ G C+   V+EAK ++ +M
Sbjct: 413 YTTLIHGHFMNNNSERALDLLNQM-KNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKM 471

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
              G  PN   Y ++ + +  A K  EA+ L  +I             DS   P +    
Sbjct: 472 AGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKI------------LDSGFQPNVVTYC 519

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            L+D L     +A    +A+     M E G+ PN   Y  +
Sbjct: 520 ALIDGLC----KAGSISEAISHFNKMRELGLDPNVQAYTAL 556



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 180/424 (42%), Gaps = 39/424 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G + +V  +ST V      G     E++KLF  +  RVR            P+   
Sbjct: 296 MKRQGVVANVVTFSTFVDAFCKEGL--VQEAMKLFAQM--RVRGM---------MPNEFT 342

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLLVFVLE 117
           Y ++++     G+    + L D+M   G  P+V+TY VM+  LC   + +    ++ ++E
Sbjct: 343 YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLME 402

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           R    G+      + +L+  +    + E A  ++  M+           ELD+  Y +  
Sbjct: 403 R---GGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGM-------ELDVSLYGTLI 452

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G   D      K L + +              PN+ IYTT+M      G+ S+ V +L 
Sbjct: 453 WGLCKDQKVDEAKSLLHKMAGCG--------LRPNTVIYTTIMDALFKAGKESEAVALL- 503

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
              +  D+   P+ VTY  ++  L KAGS+  A     +M  +G+  N   Y  L+ G+C
Sbjct: 504 --HKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFC 561

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +   ++KA  L+ EM D   +  D V Y  LIDG++   +   A     +M   G+    
Sbjct: 562 KIGSLNKAMHLMNEMIDKG-MSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDL 620

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             YT  +  F   +  + A  V  EM+    +  D   +N L+  Y ++G +EEA  +  
Sbjct: 621 YCYTCFISGFCNMNMMQEARGVLSEMI-GTGITPDKTVYNCLIRKYQKLGNMEEASSLQN 679

Query: 418 RMKE 421
            M+ 
Sbjct: 680 EMES 683



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/226 (17%), Positives = 89/226 (39%), Gaps = 18/226 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+T  Y  +++A    GK  + + L  ++ + G +P+V+TY  +I    +A      + 
Sbjct: 477 RPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAIS 536

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
              ++ E+G+   +  + +L+  +   G L  A  ++  M +    + K++    ++ Y 
Sbjct: 537 HFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYM 596

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +    D      F          + +  ++      +   YT  + G+ N   + +   
Sbjct: 597 KQANLQD-----AF----------ALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEA-- 639

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
             G +         PD   Y  ++    K G+M+ A  +  EM  +
Sbjct: 640 -RGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESV 684


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 202/460 (43%), Gaps = 44/460 (9%)

Query: 37  VVVKRVRKFSDP----DIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
           ++ K VR+FS P      + DS       PD + +N++L A    G  +   +LF  M +
Sbjct: 100 LLSKLVRRFSSPAEAAGFLRDSLASGAPAPDISIFNSLLTALGRAGNLRGMTELFTSMRD 159

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC--MTTFQSLVAAYVGFGDL 144
              KPDV+TY +++    ++      + VL+R+   G  +C  +    ++V      G L
Sbjct: 160 ASVKPDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRL 219

Query: 145 EIAETIV-QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF-----EKLLPNSINP 198
           + A   V + MR         +    L D      GD     ++      E + PN I  
Sbjct: 220 QQAIIFVDERMRHVHGCAPNAVTYNCLADAFCR-VGDIGMACKIVARMEKEGVAPNVITM 278

Query: 199 SSEPPLL---------------PKTFAPNSR----IYTTLMKGYMNEGRVSDTVRMLGAM 239
           ++    L                +T  P +R     Y+TL   +++   V   + +   M
Sbjct: 279 NTIIGGLCRVGRVGAALEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEM 338

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               D+   PD V Y T++S L +AG +  A    A M + G   +   YNIL+ G+C++
Sbjct: 339 ---ADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRK 395

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ +A ELL EM     ++PDV +YN L+ G     D +        M   G  P+ ++
Sbjct: 396 KKLHEAYELLEEM-KGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVT 454

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           + TL+  +  + +   A ++F  M  + R++ + V +N L++  C+   V+ A ++ + M
Sbjct: 455 FGTLVHGYCKAGKTDEALRIFRSM-DEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEM 513

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIK-ERC 458
           +E     NV TY +L  G+   +   +A  L   ++ ERC
Sbjct: 514 REKNVPANVTTYNALLKGLQDKKMAEKAFELMDRMREERC 553



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 150/393 (38%), Gaps = 109/393 (27%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           AP+  I+ +L+      G +     +  +MR   D +  PD VTY  +++ L K+G +  
Sbjct: 128 APDISIFNSLLTALGRAGNLRGMTELFTSMR---DASVKPDVVTYGILLNGLCKSGHVGD 184

Query: 270 ARQVLAEMT------------------------RI---------------GVPANRITYN 290
           A +VL  M+                        R+               G   N +TYN
Sbjct: 185 ALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYN 244

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR- 349
            L   +C+   I  A +++  M  +  + P+V++ N +I G   +     AL FF E R 
Sbjct: 245 CLADAFCRVGDIGMACKIVARMEKEG-VAPNVITMNTIIGGLCRVGRVGAALEFFREKRT 303

Query: 350 ----ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM---------------------- 383
               ARG A   ++Y+TL  AF   +   +A ++F EM                      
Sbjct: 304 VWPEARGNA---VTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQA 360

Query: 384 ------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
                       ++    K+D  A+N+L+ G+CR   + EA  ++E MK  G  P+V TY
Sbjct: 361 GRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTY 420

Query: 432 GSLANGISLARKPGEAL----LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
            +L +G+    K G+      LL   I + C+                 P       L  
Sbjct: 421 NTLLSGLC---KAGDFSAVDELLGHMIDDGCQ-----------------PSVVTFGTLVH 460

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +A    +AL I   M+E  I PN   Y  +
Sbjct: 461 GYCKAGKTDEALRIFRSMDEARIQPNTVIYNTL 493



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 19/280 (6%)

Query: 228 RVSDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           R S      G +R      A  PD   + ++++AL +AG++    ++   M    V  + 
Sbjct: 107 RFSSPAEAAGFLRDSLASGAPAPDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDV 166

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMAD-DAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
           +TY ILL G C+   +  A ++L  M+   + + PD+   N ++DG   I     A+ F 
Sbjct: 167 VTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFV 226

Query: 346 NE-MR-ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           +E MR   G AP  ++Y  L  AF       +A K+   M ++  V  +++  N ++ G 
Sbjct: 227 DERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEG-VAPNVITMNTIIGGL 285

Query: 404 CRMGLVEEAKRIIERMKEN-GFYP----NVATYGSLANGISLARKPGEALLLWKEIKERC 458
           CR+G V  A   +E  +E    +P    N  TY +LA+          A+ L+ E+ +  
Sbjct: 286 CRVGRVGAA---LEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMAD-- 340

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
                G   D+ +   +         L D C  AA  +KA
Sbjct: 341 ----HGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKA 376



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 147/331 (44%), Gaps = 32/331 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V   +T++  L   G  G   +++ F     R ++   P+    ++ +   
Sbjct: 266 MEKEGVAPNVITMNTIIGGLCRVGRVG--AALEFF-----REKRTVWPE----ARGNAVT 314

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ + +A  +       ++LF +M + G +PD + Y  MI    +A R          + 
Sbjct: 315 YSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMK 374

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           + G  L    +  L+  +     L  A  +++ M+        +  + D+  Y++   G 
Sbjct: 375 KAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMK-------GVGLQPDVYTYNTLLSGL 427

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
               D    ++LL + I+   +P ++          + TL+ GY   G+  + +R+    
Sbjct: 428 CKAGDFSAVDELLGHMIDDGCQPSVV---------TFGTLVHGYCKAGKTDEALRIF--- 475

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R  ++    P+ V Y T++  L K+  +D A ++  EM    VPAN  TYN LLKG   +
Sbjct: 476 RSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDK 535

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILID 330
              +KA EL+  M ++ +  P+ V+ ++L++
Sbjct: 536 KMAEKAFELMDRMREE-RCTPNYVTVDVLME 565



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 22/224 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K D  AYN ++       K  +  +L ++M   G +PDV TYN ++    +A     +  
Sbjct: 379 KLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDE 438

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +++ G    + TF +LV  Y   G  + A  I ++M E R     +I    ++   
Sbjct: 439 LLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLC 498

Query: 175 SENEGDDDDD--DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              E D      DE+ EK +P                  N   Y  L+KG  ++      
Sbjct: 499 KSREVDVAIKLFDEMREKNVP-----------------ANVTTYNALLKGLQDKKMAEKA 541

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++  MR +      P++VT   ++  L + G  +R +  + +
Sbjct: 542 FELMDRMREER---CTPNYVTVDVLMEWLPEIGETERLKCFMQQ 582


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 209/457 (45%), Gaps = 38/457 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           R G +P V +++ ++S L   G  G V E++K F+ + K            D+ P+ + Y
Sbjct: 368 RKGCIPSVVSYNCILSCL---GRKGQVDEALKKFEEMKK------------DAIPNLSTY 412

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N +++     GK +  L + D M + G  P+V+T N+M+    +A R      + E +  
Sbjct: 413 NIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDH 472

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
                   T+ SL+      G ++ A  + + M +  +    ++    + ++     G  
Sbjct: 473 KTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK--CGRK 530

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMR 240
           +D  +++ ++L    +P     LL  T+            G + +GR +   ++ LG + 
Sbjct: 531 EDGHKIYNEMLRLGCSPD---LLLLNTYMD-----CVFKAGEIEKGRALFQEIKNLGFI- 581

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD  +YT ++  LVKAG    A ++   M   G   +   YN ++ G+C+  
Sbjct: 582 --------PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSG 633

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++KA +LL EM      EP VV+Y  +IDG   ID    A   F E +++GI    + Y
Sbjct: 634 KVNKAYQLLEEMKTKGH-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIY 692

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           ++L+  F    +   A  + +E+++   +  ++  WN L++   +   + EA    + MK
Sbjct: 693 SSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYTWNCLLDALVKAEEISEALVCFQSMK 751

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +    PN  TY  L +G+   RK  +A + W+E++++
Sbjct: 752 DLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ 788



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/497 (21%), Positives = 211/497 (42%), Gaps = 44/497 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVVKRVRKFSD 47
           M +  + P   A++ ++  L+ S D              G   +V LF  +++   +   
Sbjct: 191 MRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGR 250

Query: 48  PD--------IVSDS-KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            D        + S+S +PD   YN  ++     GK     + F +M   G   D +TY  
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTS 310

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           MI +  +A R +  V + E + +     C   + +++  Y   G  E A ++++  R+ R
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLE--RQRR 368

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
           +     +   +        +G  D+  + FE++  ++I   S   ++        ++ T 
Sbjct: 369 KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETA 428

Query: 219 L-----MKG---YMNEGRVSDTVRMLGAMRRQEDNAS----------HPDHVTYTTVVSA 260
           L     MK    + N   V+  V  L   +R +D  S           PD VTY +++  
Sbjct: 429 LVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L + G +D A ++  +M       N + Y  L++ + +  + +   ++  EM       P
Sbjct: 489 LGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLR-LGCSP 547

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D++  N  +D      +       F E++  G  P   SYT L+     +     A ++F
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELF 607

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             M ++    +D  A+N +++G+C+ G V +A +++E MK  G  P V TYGS+ +G++ 
Sbjct: 608 YTM-KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAK 666

Query: 441 ARKPGEALLLWKEIKER 457
             +  EA +L++E K +
Sbjct: 667 IDRLDEAYMLFEEAKSK 683



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +A N  ++TTL++ +  EGRV   + +L  M+    N+  PD V Y   +    KAG +D
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMK---SNSLEPDVVLYNVCIDCFGKAGKVD 287

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +   EM   G+  + +TY  ++   C+  ++++A EL   M D  K  P   +YN +
Sbjct: 288 MAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHM-DQNKQVPCAYAYNTM 346

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G+ +      A +     R +G  P+ +SY  ++       Q   A K F+EM +D  
Sbjct: 347 IMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA- 405

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              ++  +N++++  C+ G +E A  + + MK+ G +PNV T   + + +  A++  +A 
Sbjct: 406 -IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDAC 464

Query: 449 LLWKEIKER---------CEVKKEGVNADSDLPPPLKPDEELLDA 484
            +++ +  +         C +  EG+     +    K  E++LDA
Sbjct: 465 SIFEGLDHKTCRPDAVTYCSL-IEGLGRHGRVDEAYKLYEQMLDA 508



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/478 (19%), Positives = 201/478 (42%), Gaps = 56/478 (11%)

Query: 7   LPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSDPDIVSD 53
           +P++  ++ ++  L  +G             D G   +V   +++V R+ K    D    
Sbjct: 406 IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACS 465

Query: 54  ---------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
                     +PD   Y +++      G+  +  +L++QM +    P+ + Y  +I+   
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRR 159
           +  RK     +   +L +G +  +    + +      G++E    + Q ++        R
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDAR 585

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
               +I  L    ++ E         E+F  +                    ++R Y T+
Sbjct: 586 SYTILIHGLVKAGFAHEAY-------ELFYTMKEQGC-------------VLDTRAYNTV 625

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G+   G+V+   ++L  M+ +      P  VTY +V+  L K   +D A  +  E   
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTK---GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 682

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G+  N + Y+ L+ G+ +  +ID+A  ++ E+     + P+V ++N L+D  +  ++ +
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYTWNCLLDALVKAEEIS 741

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK--VFDEMLRDPRVKVDIVAWN 397
            AL  F  M+     P  I+Y+ L+       + +  NK  VF + ++    K ++  + 
Sbjct: 742 EALVCFQSMKDLKCTPNYITYSILIHGLC---KIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            ++ G  + G + EA  + E+ KE G   + A Y ++  G+S A +  +A  L++E +
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEAR 856



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/473 (20%), Positives = 193/473 (40%), Gaps = 51/473 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P  +AY  ++ A +        L LF QM E G   +V  +  +I++ AR  R    + 
Sbjct: 197 RPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALS 256

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+ +    +   +  +   +  +   G +++A      M+            L L+D +
Sbjct: 257 LLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKA---------NGLVLDDVT 307

Query: 175 SEN------EGDD-DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
             +      + D  ++  E+FE +  N   P +               Y T++ GY   G
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYA-------------YNTMIMGYGMAG 354

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           +  D   +L    RQ      P  V+Y  ++S L + G +D A +   EM +  +P N  
Sbjct: 355 KFEDAYSLL---ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLS 410

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYNI++   C+  +++ A  ++R+   DA + P+V++ NI++D          A + F  
Sbjct: 411 TYNIMIDMLCKAGKLETAL-VVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEG 469

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           +  +   P  ++Y +L++      +   A K++++ML D     + V +  L+  + + G
Sbjct: 470 LDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQML-DANQIPNAVVYTSLIRNFFKCG 528

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
             E+  +I   M   G  P++    +  + +  A +  +   L++EIK            
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN----------- 577

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    PD      L    V+A F  +A E+   M+E G   +   Y  +
Sbjct: 578 -----LGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 135/350 (38%), Gaps = 67/350 (19%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P  ++++ ++  L  +G     E+ +LF  + ++               DT AYN V
Sbjct: 579 GFIPDARSYTILIHGLVKAG--FAHEAYELFYTMKEQ-----------GCVLDTRAYNTV 625

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K  QL ++M   G +P V+TY  +I   A+  R      + E     GI
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            L +  + SL+    GFG +            GR D   +I E                 
Sbjct: 686 ELNVVIYSSLID---GFGKV------------GRIDEAYLIME----------------- 713

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              L+ K   PN   +  L+   +    +S+ +    +M+   D
Sbjct: 714 ------------------ELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK---D 752

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+++TY+ ++  L K    ++A     EM + G   N  TY  ++ G  +   I +
Sbjct: 753 LKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE 812

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           A  L  +  +   +  D   YN +I+G    + ++ A   F E R +G +
Sbjct: 813 ADTLFEKFKEKGGV-ADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCS 861



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 126/288 (43%), Gaps = 9/288 (3%)

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S++NE      D V + L       S E  L      PN  +   +++   +   V++ V
Sbjct: 58  SAKNENKRQVIDSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKD---VNNAV 114

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV-PANRITYNIL 292
                  R  D A   +   Y +++  + +    +   Q+L EM+  G  P+N     I+
Sbjct: 115 NYFRWAERLTDRAHCRE--AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIV 172

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L  + +  ++ +A   ++ M    K  P   +Y  LI       DS   LT F +M+  G
Sbjct: 173 L-SFIKSRKLREAFTFIQTMRK-LKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG 230

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            A     +TTL++ FA   +   A  + DEM +   ++ D+V +N+ ++ + + G V+ A
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEM-KSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            +    MK NG   +  TY S+   +  A +  EA+ L++ + +  +V
Sbjct: 290 WKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV 337



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/311 (18%), Positives = 113/311 (36%), Gaps = 66/311 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +   +A++TV+     SG              V +  +  +       +P    
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGK-------------VNKAYQLLEEMKTKGHEPTVVT 656

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y +V++  A + +  +   LF++    G + +V+ Y+ +I    +  R      ++E ++
Sbjct: 657 YGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELM 716

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+T  + T+  L+ A V   ++  A    Q+M+             DL          
Sbjct: 717 QKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK-------------DL---------- 753

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                    K  PN I                   Y+ L+ G     + +        M+
Sbjct: 754 ---------KCTPNYIT------------------YSILIHGLCKIRKFNKAFVFWQEMQ 786

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q      P+  TYTT++S L KAG++  A  +  +    G  A+   YN +++G     
Sbjct: 787 KQ---GFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNAN 843

Query: 301 QIDKAKELLRE 311
           +   A  L  E
Sbjct: 844 RASDAYRLFEE 854


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 18/276 (6%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N   PD +TY ++++   + G  + AR +  EM   G+  +  TYN LL   C+  Q+D 
Sbjct: 287 NGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDL 346

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A E++ EM    KI P+VV+Y+ + DG+        AL  +NEM+  GI   ++SY TL+
Sbjct: 347 AYEIMLEMPGK-KILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLL 405

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             +A   + + A KV  EM     VK D+V +N L++GY + G   E  R+ + MK++  
Sbjct: 406 SIYAKLGRFEDALKVCKEM-GSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRV 464

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
           +PN+ TY +L +  S      EA+ +++E K+                  LK D  L   
Sbjct: 465 FPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQ----------------AGLKADVVLYSE 508

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L +   +      A+ ++  M + GI PN   Y  I
Sbjct: 509 LINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSI 544



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 184/434 (42%), Gaps = 104/434 (23%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L  GY   V A+S ++S    SG          FD  +K          VS  KP+   Y
Sbjct: 214 LSEGYGNTVFAFSALISAYGKSG---------YFDEAIKVFESMK----VSGLKPNLVTY 260

Query: 62  NAVLNACANLG-KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           NAV++AC   G + K+ +++F++M   G +PD +TYN ++ +C+R         +   ++
Sbjct: 261 NAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMI 320

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI   + T+ +L+ A    G +++A  I+  M                          
Sbjct: 321 DRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPG------------------------ 356

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                   +K+LPN +                   Y+T+  GY   GR+ D + +   M+
Sbjct: 357 --------KKILPNVVT------------------YSTMADGYAKAGRLEDALNLYNEMK 390

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                    D V+Y T++S   K G  + A +V  EM   GV  + +TYN LL GY +Q 
Sbjct: 391 FL---GIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQG 447

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           + ++   + +EM  D ++ P++++Y+ LID +     S G+L                 Y
Sbjct: 448 KFNEVTRVFKEMKKD-RVFPNLLTYSTLIDVY-----SKGSL-----------------Y 484

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              M+ F    Q  L              K D+V ++ L+   C+ GLV+ A  +++ M 
Sbjct: 485 EEAMEVFREFKQAGL--------------KADVVLYSELINALCKNGLVDSAVLLLDEMT 530

Query: 421 ENGFYPNVATYGSL 434
           + G  PNV TY S+
Sbjct: 531 KEGIRPNVVTYNSI 544



 Score = 38.5 bits (88), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 34  LFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
           L++  ++  R+F    +    K D   Y+ ++NA    G     + L D+M + G +P+V
Sbjct: 483 LYEEAMEVFREFKQAGL----KADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNV 538

Query: 94  LTYNVMIKLCARASRKHLLV 113
           +TYN +I    R++    LV
Sbjct: 539 VTYNSIIDAFGRSTTAEFLV 558


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 168/404 (41%), Gaps = 64/404 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y  ++ A +  G+  + L LF++M E G +P+V TY V+I    + ++      +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKM 356

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G+   + T+ +L+  Y                       CK            
Sbjct: 357 LSEMSEKGLIPSVVTYNALIDGY-----------------------CK------------ 381

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNS 213
             EG  DD  E+ + +  NS  P++                         +L +  +P+ 
Sbjct: 382 --EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSL 439

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y +L+ G      +    R+L  M    +N   PD  TY+  +  L K G ++ A  +
Sbjct: 440 ITYNSLIHGQCKVNDLESAYRLLSLMN---ENGLVPDQWTYSVFIDTLCKEGRVEEAGTL 496

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
              +   GV AN + Y  L+ GYC+  +ID A  LL  M +DA + P+  +YN+LI+G  
Sbjct: 497 FDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL-PNSYTYNVLIEGLC 555

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A +   +M   G+ PT ++YT L+           A KVF+ M+     + D+
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMV-SLGYQPDV 614

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
             +   +  Y   G++EE   +I +M E G  P++ TY  L +G
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDG 658



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 21/314 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL    +PN   +  ++ GY   G V +       + +      HPD  TYT+++    +
Sbjct: 185 LLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQA---GLHPDTFTYTSLILGHCR 241

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +D A +V   M + G   N ++Y  L+ G C+  +I++A +L  +M +D    P V 
Sbjct: 242 NKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED-NCCPTVR 300

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y +LI           AL  FNEM+ +G  P   +YT L+      ++   A K+  EM
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM 360

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                +   +V +N L++GYC+ G++++A  I++ M+ N   PN  TY  L  G+   RK
Sbjct: 361 SEKGLIP-SVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRK 419

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A+ L  ++ ER             L P L     L+     +    + +R    +++
Sbjct: 420 VHKAMALLNKMLER------------KLSPSLITYNSLIHGQCKVNDLESAYR----LLS 463

Query: 504 CMEEHGIPPNKTKY 517
            M E+G+ P++  Y
Sbjct: 464 LMNENGLVPDQWTY 477



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 124/551 (22%), Positives = 225/551 (40%), Gaps = 72/551 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+V  ++ ++        DG  +  K+ D   K + + S+  ++    P    
Sbjct: 325 MKEKGCEPNVHTYTVLI--------DGLCKENKM-DEARKMLSEMSEKGLI----PSVVT 371

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA+++     G      ++ D M      P+  TYN +I    +  + H  + +L ++L
Sbjct: 372 YNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML 431

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR------------DVCKIIREL 168
           E  ++  + T+ SL+       DLE A  ++  M E                +CK  R  
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNS--------INPSSEPPLLPKTFAPNSRIYTTLM 220
           +        +      +EV    L +         +  S    +L     PNS  Y  L+
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
           +G   E ++ +   ++  M         P  VTYT ++  ++K G+ D A +V   M  +
Sbjct: 552 EGLCKEKKMKEASSLVAKMLTM---GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL 608

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G   +  TY   L  Y  Q  +++  +++ +M ++  I PD+V+Y +LIDG+  +  +  
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG-ILPDLVTYTVLIDGYARLGLTHR 667

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV----AW 396
           A  F   M   G  P+    + L+K  +  ++ K   +   E+  D    V+ V     W
Sbjct: 668 AFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMK---ETRSEIGIDSVSNVNSVDIADVW 724

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             L          E A ++ E+M E+G   +V+ YG+L  G     +  EA  L   +KE
Sbjct: 725 KTLE--------YEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKE 776

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           R                 + P E++ ++L D C +   + +A+ +V  M E+G+ P    
Sbjct: 777 R----------------GMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLES 820

Query: 517 YK----KIYVE 523
           YK     +Y+E
Sbjct: 821 YKLLVCGLYIE 831



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/499 (23%), Positives = 207/499 (41%), Gaps = 42/499 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   +NA++N    +G   +      ++ + G  PD  TY  +I    R         V
Sbjct: 192 PNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEV 251

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              + + G      ++ +L+      G +  A  +   M E   + C  +R   +  Y+ 
Sbjct: 252 FLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED--NCCPTVRTYTVLIYAL 309

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   +   +F +             +  K   PN   YT L+ G   E ++ +  +M
Sbjct: 310 SGSGRKVEALNLFNE-------------MKEKGCEPNVHTYTVLIDGLCKENKMDEARKM 356

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M    +    P  VTY  ++    K G +D A ++L  M       N  TYN L+ G
Sbjct: 357 LSEM---SEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICG 413

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C++ ++ KA  LL +M +  K+ P +++YN LI G   ++D   A    + M   G+ P
Sbjct: 414 LCKKRKVHKAMALLNKMLER-KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVP 472

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            + +Y+  +       + + A  +FD + +   VK + V +  L++GYC++G ++ A  +
Sbjct: 473 DQWTYSVFIDTLCKEGRVEEAGTLFDSV-KAKGVKANEVIYTALIDGYCKVGKIDVAYSL 531

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN--------- 466
           +ERM  +   PN  TY  L  G+   +K  EA  L  ++     VK   V          
Sbjct: 532 LERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM-GVKPTVVTYTILIGEML 590

Query: 467 ADSDLPPPLKPDEEL--LDALADICVRAAF----FRKAL-----EIVACMEEHGIPPNKT 515
            D      LK    +  L    D+C   AF    F + +     +++A M E GI P+  
Sbjct: 591 KDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLV 650

Query: 516 KYKKIYVEMHSRMFTSKHA 534
            Y  + ++ ++R+  +  A
Sbjct: 651 TY-TVLIDGYARLGLTHRA 668



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 29/324 (8%)

Query: 229 VSDTVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
           + D + +L   R+   +      P    Y T++ +L K   +D  + V  E+    +  N
Sbjct: 134 IEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPN 193

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
             T+N ++ GYC+   + +A EL       A + PD  +Y  LI G         A   F
Sbjct: 194 IYTFNAMVNGYCKIGNVVEA-ELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVF 252

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEG 402
             M  +G    ++SYT L+     + +   A K+F +M  D   P V+     + +L+  
Sbjct: 253 LIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVR----TYTVLIYA 308

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
               G   EA  +   MKE G  PNV TY  L +G+    K  EA  +  E+ E+     
Sbjct: 309 LSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK----- 363

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
                       L P     +AL D   +      A EI+  ME +   PN   Y ++  
Sbjct: 364 -----------GLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELIC 412

Query: 523 EMHSRMFTSKHASQARQDRRRERK 546
            +  +     H + A  ++  ERK
Sbjct: 413 GLCKK--RKVHKAMALLNKMLERK 434



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 180/446 (40%), Gaps = 54/446 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G +P    +S  +  L   G     E+  LFD V  +             K +   
Sbjct: 465 MNENGLVPDQWTYSVFIDTLCKEGR--VEEAGTLFDSVKAK-----------GVKANEVI 511

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y A+++    +GK      L ++M      P+  TYNV+I+ LC     K     V  ++
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV-AKM 570

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDVCKIIRELDLEDYSSEN 177
           L MG+   + T+  L+   +  G  + A  +   M     + DVC     L    ++  +
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL----HAYFS 626

Query: 178 EGDDDDDDEVFEKLLPNSINPS-----------SEPPLLPKTF-----------APNSRI 215
           +G  ++ D+V  K+    I P            +   L  + F            P+  I
Sbjct: 627 QGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYI 686

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
            + L+K   +E R+ +T   +G      D+ S+ + V    V   L      + A ++  
Sbjct: 687 VSILIKNLSHENRMKETRSEIGI-----DSVSNVNSVDIADVWKTL----EYEIALKLFE 737

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M   G   +   Y  L+ G+CQQ ++++A+ L+  M +   + P    YN L+D    +
Sbjct: 738 KMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERG-MSPSEDIYNSLLDCCCKL 796

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
              A A+   + M   G+ P   SY  L+    +    + A  VF  +L       D VA
Sbjct: 797 GVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL-SCGYNYDEVA 855

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKE 421
           W +L++G  +  LV+E   +I+ M+E
Sbjct: 856 WKVLIDGLLKRDLVDECSELIDIMEE 881


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 18/276 (6%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N   PD +TY ++++   + G  + AR +  EM   G+  +  TYN LL   C+  Q+D 
Sbjct: 287 NGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDL 346

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A E++ EM    KI P+VV+Y+ + DG+        AL  +NEM+  GI   ++SY TL+
Sbjct: 347 AYEIMLEMPGK-KILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLL 405

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             +A   + + A KV  EM     VK D+V +N L++GY + G   E  R+ + MK++  
Sbjct: 406 SIYAKLGRFEDALKVCKEM-GSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRV 464

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
           +PN+ TY +L +  S      EA+ +++E K+                  LK D  L   
Sbjct: 465 FPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQ----------------AGLKADVVLYSE 508

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L +   +      A+ ++  M + GI PN   Y  I
Sbjct: 509 LINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSI 544



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 184/434 (42%), Gaps = 104/434 (23%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L  GY   V A+S ++S    SG          FD  +K          VS  KP+   Y
Sbjct: 214 LSEGYGNTVFAFSALISAYGKSG---------YFDEAIKVFESMK----VSGLKPNLVTY 260

Query: 62  NAVLNACANLG-KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           NAV++AC   G + K+ +++F++M   G +PD +TYN ++ +C+R         +   ++
Sbjct: 261 NAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMI 320

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI   + T+ +L+ A    G +++A  I+  M                          
Sbjct: 321 DRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPG------------------------ 356

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                   +K+LPN +                   Y+T+  GY   GR+ D + +   M+
Sbjct: 357 --------KKILPNVVT------------------YSTMADGYAKAGRLEDALNLYNEMK 390

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                    D V+Y T++S   K G  + A +V  EM   GV  + +TYN LL GY +Q 
Sbjct: 391 FL---GIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQG 447

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           + ++   + +EM  D ++ P++++Y+ LID +     S G+L                 Y
Sbjct: 448 KFNEVTRVFKEMKKD-RVFPNLLTYSTLIDVY-----SKGSL-----------------Y 484

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              M+ F    Q  L              K D+V ++ L+   C+ GLV+ A  +++ M 
Sbjct: 485 EEAMEVFREFKQAGL--------------KADVVLYSELINALCKNGLVDSAVLLLDEMT 530

Query: 421 ENGFYPNVATYGSL 434
           + G  PNV TY S+
Sbjct: 531 KEGIRPNVVTYNSI 544



 Score = 38.5 bits (88), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 34  LFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
           L++  ++  R+F    +    K D   Y+ ++NA    G     + L D+M + G +P+V
Sbjct: 483 LYEEAMEVFREFKQAGL----KADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNV 538

Query: 94  LTYNVMIKLCARASRKHLLV 113
           +TYN +I    R++    LV
Sbjct: 539 VTYNSIIDAFGRSTTAEFLV 558


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 213/503 (42%), Gaps = 49/503 (9%)

Query: 43  RKFSDPDIVSDS--KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           R  S  D++S S  +    AY+A+L   + LG     +  + +M   G +P++L YN +I
Sbjct: 163 RTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVI 222

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR 159
               +         +++++ E  ++    T+ S++  +    DL+ A  +   M +EG  
Sbjct: 223 NALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCE 282

Query: 160 DVCKIIREL--DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP----------- 206
                   L   L D    NE  D   + +   +LP +   +   P++            
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA--HTCTGPIIALCDMGCYEDAW 340

Query: 207 --------KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                   K   PN   YT L+ G    G +   +   G   R   +   P+ VTY  ++
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAI---GLFHRMSRDGVFPNTVTYNALI 397

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + LV+   +  A  VL  M R G   N +TYN ++KGYC      KA  ++  M      
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH- 456

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
             ++V+YN +I G+    ++  AL   + MR  G  P + SYT L+  F   S+ + A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+EM+ D     + V +  L++GYC+   ++ A  ++E MK +G  PNV TY  L +G+
Sbjct: 517 LFNEMVDDGLCPNE-VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGL 575

Query: 439 SLARKPGEALLLWKEIKERCEVK-KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +           +   +E C+V  +EG+           P+     A+ D   +      
Sbjct: 576 TKQNN-------FSGAEELCKVMIEEGI----------FPNVVTYTAMIDGLCKNGSTSL 618

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           ALE+   M E G  PN   Y  +
Sbjct: 619 ALEMFNKMIEQGCLPNLLTYSSL 641



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 169/406 (41%), Gaps = 56/406 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   Y A+++     G  K  + LF +M   G  P+ +TYN +I +     R      
Sbjct: 352 EPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL  +   G +  + T+  ++  Y   GD + A  ++  M                    
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM-------------------- 451

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                         L +  + N   Y T++KGY + G  +  +R
Sbjct: 452 ------------------------------LQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  MR   D    PD  +YT ++    K   M+ A  +  EM   G+  N +TY  L+ 
Sbjct: 482 ILDLMR---DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID 538

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+  ++D A  LL  M   +   P+V +YN+LI G    ++ +GA      M   GI 
Sbjct: 539 GYCKDEKLDTATSLLEHM-KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ++YT ++     +    LA ++F++M+    +  +++ ++ L+    + G VEEA+ 
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLP-NLLTYSSLIRALGQEGKVEEAEN 656

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCE 459
           +   ++ +G  P+  TY  +     ++ K   A   L + IK  C+
Sbjct: 657 LFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQ 702



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/481 (19%), Positives = 187/481 (38%), Gaps = 60/481 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G  P++  ++ ++      GD  P +++ + + +++R               +   
Sbjct: 416 MGRNGCSPNIVTYNEMIKGYCILGD--PKKAMLVMNNMLQR-----------GHSANLVT 462

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++    + G     L++ D M + G KPD  +Y  +I    + S+      +   ++
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
           + G+     T+ +L+  Y     L+ A ++++ M R G R   +    L        N  
Sbjct: 523 DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 582

Query: 180 DDDDDDEVF--EKLLPNSI-----------NPSSEPPL------LPKTFAPNSRIYTTLM 220
             ++  +V   E + PN +           N S+   L      + +   PN   Y++L+
Sbjct: 583 GAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
           +    EG+V +   +   + R       PD +TY  ++ A + +G ++ A   L  M + 
Sbjct: 643 RALGQEGKVEEAENLFAELERH---GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA 699

Query: 281 GVPANRITYNILLKGYCQQ-LQIDKAKELLREM--------------------ADDAKIE 319
           G      TY +L+KG   + L  D+    L ++                    A  A+++
Sbjct: 700 GCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELD 759

Query: 320 P--DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           P   V   N L+           A      M ++G+ P + +Y +L+ +        LA 
Sbjct: 760 PGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAM 819

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            VF  M      +V +  +  L+   C++   +EA+   E M    + P+      L +G
Sbjct: 820 GVFKHM-STQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDG 878

Query: 438 I 438
           +
Sbjct: 879 L 879



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 50/386 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG  P+V+ ++ ++  L    +    E  +L  V+++               P+   
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAE--ELCKVMIEE-----------GIFPNVVT 602

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++     G     L++F++M E G  P++LTY+ +I+   +  +      +   + 
Sbjct: 603 YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------IIRELDLED 172
             G+     T+  ++ AY+  G +E A   +  M +     C+        +I+ L  E 
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG---CQPTLWTYGVLIKGLKNEY 719

Query: 173 YSSENEGDDDDDDEVFEKLLPN-------------SINPSSEPPLLPKTFAPNSRIYTTL 219
             +      D        ++PN             S+  +    L P     + ++   L
Sbjct: 720 LLA------DQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGL---SVQVQNAL 770

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +      GR  +   +LG+M  Q      PD   Y +++ +L++  ++D A  V   M+ 
Sbjct: 771 VSNLSTAGRWFEANELLGSMISQ---GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G   +   Y  L+   CQ  +  +A+     M       PD V   +LIDG +      
Sbjct: 828 QGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT-WNPDDVVQAVLIDGLLRDGYKD 886

Query: 340 GALTFFNEMRARGIAPTKISYTTLMK 365
             + F + M  R   P+   YT L +
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAR 912


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 121/538 (22%), Positives = 224/538 (41%), Gaps = 66/538 (12%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+++ ++ V+  L A GD     +V LFD + +R              PD   Y+ ++  
Sbjct: 156 PNLQTYNIVLRSLCARGDLD--RAVTLFDSLRRR-----------QVAPDCITYSTLMCG 202

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL-EMGITL 126
            A   +    L L D+M   G +PDV+ YN ++  C +A     ++ V ++++ + G   
Sbjct: 203 LAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARP 262

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+  ++     FG  +    + + M         I   + +        GD D    
Sbjct: 263 NLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLC--RSGDVDGAAR 320

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           V+ +++   +               ++ +Y +L+KG+   GRV +  +   +       A
Sbjct: 321 VYSEIIKTGL-------------VIDAAMYNSLVKGFCQAGRVQEAWKFWDS----AGFA 363

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQV--LAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
              +  TY  ++  L  +G +D A ++  L E     +P + +T+  L+ G CQ    +K
Sbjct: 364 GLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIP-DTVTFGTLIHGLCQNGFANK 422

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  +  E     K + DV SY+ +I+G   +     A+  + +M   G  P    Y  L+
Sbjct: 423 AFTIFEEARVSGK-QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALI 481

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             F    +   A +++ +M  D      ++ +N L++G C+    +EA  +   M ENGF
Sbjct: 482 SGFCQVYRTSDAVRIYSKM-ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGF 540

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CEVKK--EGVN 466
            P++ TYGSL  G+   +K  +AL +WK+I  +                C   K  E ++
Sbjct: 541 TPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALH 600

Query: 467 ADSDL------PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
             SD+      PP L     L+D L +      +  KA  +   + E G+ P+   Y 
Sbjct: 601 VFSDMKEKKNCPPNLVTYNTLMDGLYE----TGYIDKAATLWTSITEDGLEPDIISYN 654



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/484 (21%), Positives = 215/484 (44%), Gaps = 50/484 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG  P V  ++ ++     +G+   V  ++++D +VK      DP     ++P+ A 
Sbjct: 219 MPRSGVQPDVVCYNALLGGCFKAGEFEKV--MRVWDKLVK------DPG----ARPNLAT 266

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+     G+ K+  +++++M     +PDV+TY ++I    R+        V   I+
Sbjct: 267 YNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEII 326

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSENEG 179
           + G+ +    + SLV  +   G ++ A      A   G R+    +R  ++      + G
Sbjct: 327 KTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRN----LRTYNIMIKGLFDSG 382

Query: 180 DDDDDDEVFEKL------LPNSINPSSEPPLLPK--------TFAPNSRI---------Y 216
             D+  E+++ L      +P+++   +    L +        T    +R+         Y
Sbjct: 383 MVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSY 442

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           ++++ G  N GR+ D V++   M   + +   P+   Y  ++S   +      A ++ ++
Sbjct: 443 SSMINGLCNVGRLVDAVKVYEKM---DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSK 499

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL-- 334
           M   G     ITYN L+ G C+  +  +A  + REM ++    PD+ +Y  LI G     
Sbjct: 500 MADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENG-FTPDITTYGSLIRGLFSDK 558

Query: 335 -IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            IDD   AL+ + ++  +G+    + +  L+     + +   A  VF +M        ++
Sbjct: 559 KIDD---ALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNL 615

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L++G    G +++A  +   + E+G  P++ +Y +   G+    +  E + L  E
Sbjct: 616 VTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDE 675

Query: 454 IKER 457
           +  R
Sbjct: 676 VLSR 679



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 191/448 (42%), Gaps = 52/448 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+ +   P V  +  ++  L  SGD DG   + +++  ++K           +    D A
Sbjct: 290 MVANNLQPDVITYGILIHGLCRSGDVDG---AARVYSEIIK-----------TGLVIDAA 335

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN+++      G+ ++  + +D    F    ++ TYN+MIK    +      + + + +
Sbjct: 336 MYNSLVKGFCQAGRVQEAWKFWDSA-GFAGLRNLRTYNIMIKGLFDSGMVDEAIELWD-L 393

Query: 120 LEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           LE  +  C+    TF +L+      G    A TI +  R   +       +LD+  YSS 
Sbjct: 394 LEKDVA-CIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGK-------QLDVFSYSSM 445

Query: 177 -----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                N G   D  +V+EK+  +   P             NS IY  L+ G+    R SD
Sbjct: 446 INGLCNVGRLVDAVKVYEKMDKDGCKP-------------NSHIYNALISGFCQVYRTSD 492

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            VR+   M    DN   P  +TY T++  L KA     A  V  EM   G   +  TY  
Sbjct: 493 AVRIYSKM---ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGS 549

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-A 350
           L++G     +ID A  + +++     ++ DV+ +NILI G         AL  F++M+  
Sbjct: 550 LIRGLFSDKKIDDALSIWKQILYKG-LKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEK 608

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +   P  ++Y TLM     +     A  ++  +  D  ++ DI+++N  ++G C    + 
Sbjct: 609 KNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITED-GLEPDIISYNTRIKGLCSCDRIH 667

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGI 438
           E  ++++ +   G  P V T+  L   +
Sbjct: 668 EGIQLLDEVLSRGIIPTVITWNILVRAV 695



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 118/245 (48%), Gaps = 5/245 (2%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +  APN + Y  +++     G +   V +  ++RR++     PD +TY+T++  L K   
Sbjct: 152 RRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQ---VAPDCITYSTLMCGLAKQDR 208

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A  +L EM R GV  + + YN LL G  +  + +K   +  ++  D    P++ +YN
Sbjct: 209 LDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYN 268

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +++DG             +  M A  + P  I+Y  L+     S     A +V+ E+++ 
Sbjct: 269 VMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKT 328

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V +D   +N LV+G+C+ G V+EA +  +     G   N+ TY  +  G+  +    E
Sbjct: 329 GLV-IDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDE 386

Query: 447 ALLLW 451
           A+ LW
Sbjct: 387 AIELW 391



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 7/214 (3%)

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI-----TYNILLKGYCQQL 300
             +P   ++  ++ A V+A     A    A ++  G    RI     TYNI+L+  C + 
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSH-GAFGRRIAPNLQTYNIVLRSLCARG 172

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +D+A  L   +    ++ PD ++Y+ L+ G    D    AL   +EM   G+ P  + Y
Sbjct: 173 DLDRAVTLFDSLRR-RQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCY 231

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+     + + +   +V+D++++DP  + ++  +N++++G C+ G  +E   + ERM 
Sbjct: 232 NALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMV 291

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            N   P+V TYG L +G+  +     A  ++ EI
Sbjct: 292 ANNLQPDVITYGILIHGLCRSGDVDGAARVYSEI 325



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%)

Query: 45  FSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
           FSD     +  P+   YN +++     G   K   L+  + E G +PD+++YN  IK   
Sbjct: 602 FSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLC 661

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
              R H  + +L+ +L  GI   + T+  LV A + +G +++
Sbjct: 662 SCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQV 703


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 130/578 (22%), Positives = 238/578 (41%), Gaps = 99/578 (17%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           +P+V  +  ++S     G  G             R ++     +     P+   +N++++
Sbjct: 304 IPNVVTYRILLSGCLGKGQLG-------------RCKRILSMMMTEGCYPNREMFNSLVH 350

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCAR-----ASRKHLLVFVLERIL 120
           A           +LF +M + G +P  L YN+ I  +C+      +    L       +L
Sbjct: 351 AYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEML 410

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE-- 178
           ++G+ L      +      G G  + A  I+          C+++ +  + D S+ ++  
Sbjct: 411 DLGVVLNKVNVSNFARCLCGAGKFDKAFEII----------CEMMSKGFVPDDSTYSKVI 460

Query: 179 GDDDDDDEV------FEKLLPNSINPSSEP----------------------PLLPKTFA 210
           G   D  +V      FE++  N I PS                          +L     
Sbjct: 461 GFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCT 520

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   YT+L+  Y+   +V D  ++   M  +    S P+ VTYT ++    KAG +D+A
Sbjct: 521 PNVVTYTSLIHAYLKARKVFDANKLFEMMLLE---GSKPNVVTYTALIDGHCKAGQIDKA 577

Query: 271 RQVLAEM-----------------TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
            Q+ A M                      P N ITY  L+ G C+  ++++A ELL  M+
Sbjct: 578 CQIYARMQGDIESSDIDMYFKLDDNDCETP-NIITYGALVDGLCKANRVEEAHELLDTMS 636

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
            +   EP+ + Y+ LIDGF        A   F +M  RG  P   +Y++L+ +     + 
Sbjct: 637 VNG-CEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRL 695

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
            L  KV  +ML +     ++V +  +++G C++G  EEA R++ +M+E G YPNV TY +
Sbjct: 696 DLVLKVLSKMLENS-CTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTA 754

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           + +G     K  + L L++++  +                   P+      L + C    
Sbjct: 755 MIDGFGKIGKIEQCLELYRDMCSK----------------GCAPNFITYRVLINHCCSTG 798

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTS 531
              +A  ++  M++   P + + Y+KI +E  +R F +
Sbjct: 799 LLDEAHRLLDEMKQTYWPRHISSYRKI-IEGFNREFIT 835



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 110/498 (22%), Positives = 202/498 (40%), Gaps = 62/498 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR    P+V  +++++           +++ K+FD       K  +  ++  SKP+   
Sbjct: 514 MLRDNCTPNVVTYTSLI--------HAYLKARKVFDA-----NKLFEMMLLEGSKPNVVT 560

Query: 61  YNAVLNACANLGKPKKFLQLFDQMH----------------EFGAKPDVLTYNVMIKLCA 104
           Y A+++     G+  K  Q++ +M                      P+++TY  ++    
Sbjct: 561 YTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLC 620

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
           +A+R      +L+ +   G       + +L+  +   G LE A+ +   M E  R  C  
Sbjct: 621 KANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSE--RGYCP- 677

Query: 165 IRELDLEDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
               +L  YSS       E   D   +V  K+L NS               PN  IYT +
Sbjct: 678 ----NLYTYSSLINSLFKEKRLDLVLKVLSKMLENSC-------------TPNVVIYTDM 720

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G    G+  +  R+   M + E+   +P+ +TYT ++    K G +++  ++  +M  
Sbjct: 721 IDGLCKVGKTEEAYRL---MLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCS 777

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G   N ITY +L+   C    +D+A  LL EM         + SY  +I+GF    +  
Sbjct: 778 KGCAPNFITYRVLINHCCSTGLLDEAHRLLDEM-KQTYWPRHISSYRKIIEGF--NREFI 834

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV-DIVAWNM 398
            ++   +E+      P +  Y  L+  F  + + + A  + +E+   P + V +   +  
Sbjct: 835 TSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTS 894

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER- 457
           L+E       V++A  +   M      P ++T+  L  G++   K  EAL L   I +  
Sbjct: 895 LIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQMV 954

Query: 458 CEVKKEGVNADSDLPPPL 475
           C V    VN  +    PL
Sbjct: 955 CHVCSNFVNYKTTRALPL 972



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 116/526 (22%), Positives = 212/526 (40%), Gaps = 79/526 (15%)

Query: 59  AAYNAVL-----NACANLGKPKKFL-QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
             YNA++     NA  N     KFL Q+ D   E   K      N +I+ C R    ++ 
Sbjct: 134 VVYNALIELLCCNAVNNDRVSHKFLMQIRDDDRELLRK----LLNFLIQKCCRNGMWNVA 189

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDL 170
           +  L R+ + G     TT+ +L+  ++    L+ A  + + M     R D C     L  
Sbjct: 190 LEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCT----LGC 245

Query: 171 EDYSSENEGDDDDDDEVFEK--LLPNS------INPSSEPPLLPK-----------TFAP 211
             YS    G   D   + EK   +P++      ++   E  L  +           +  P
Sbjct: 246 FAYSLCKAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIP 305

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N   Y  L+ G + +G++    R+L  M  +     +P+   + ++V A  K+     A 
Sbjct: 306 NVVTYRILLSGCLGKGQLGRCKRILSMMMTE---GCYPNREMFNSLVHAYCKSRDYSYAY 362

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL-LREMADDAKIEPDVVSYNILID 330
           ++  +M + G     + YNI +   C   ++  +  L L E A    ++  VV   + + 
Sbjct: 363 KLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVS 422

Query: 331 GFILIDDSAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            F      AG    A     EM ++G  P   +Y+ ++     +S+ + A  +F+EM ++
Sbjct: 423 NFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKN 482

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V   +  + +L++ +C+ GL+++A+   + M  +   PNV TY SL +    ARK  +
Sbjct: 483 GIVP-SVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFD 541

Query: 447 ALLLWK-------------------------EIKERCEV--KKEGVNADSDLPPPLKPDE 479
           A  L++                         +I + C++  + +G    SD+    K D+
Sbjct: 542 ANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDD 601

Query: 480 E--------LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                       AL D   +A    +A E++  M  +G  PN+  Y
Sbjct: 602 NDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVY 647


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 214/476 (44%), Gaps = 43/476 (9%)

Query: 44  KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
           KF +  +     PD  A  +++      GK  K  ++ + + + GA PDV+TYNV+I   
Sbjct: 131 KFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGY 190

Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV--QAMREGRRDV 161
            +       + +L+R   M ++  + T+ +++      G L+ A  ++  Q  RE   DV
Sbjct: 191 CKTGEIGSALQLLDR---MSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDV 247

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
             I   + +E    E+            KLL    +   +P ++          Y  L+ 
Sbjct: 248 --ITYTILIEATCKESGVGQA------MKLLDEMRDKGCKPDVVT---------YNVLIN 290

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G   EGR+ + +R L  M         P+ +T+  ++ ++   G    A + LAEM R G
Sbjct: 291 GICKEGRLDEAIRFLNHM---PSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG 347

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              + +T+NIL+   C++  I +A ++L +M       P+ +SYN L+           A
Sbjct: 348 CSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHG-CTPNSLSYNPLLHALCKDKKMERA 406

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           + + + M +RG  P  ++Y TL+ A     +  +A ++ +++       V ++ +N +++
Sbjct: 407 IEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPV-LITYNTVID 465

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           G  ++G  ++A ++++ MK  G  P++ TY +L  G+S   K  EA+  + +++E     
Sbjct: 466 GLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEM---- 521

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                        +KP+    +++     +A    +A++ +A M   G  P +T Y
Sbjct: 522 ------------GVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSY 565



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 195/446 (43%), Gaps = 73/446 (16%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           SG +P V  ++ ++S    +G+ G   +++L D      R    PD+V+        YN 
Sbjct: 174 SGAVPDVITYNVLISGYCKTGEIG--SALQLLD------RMSVSPDVVT--------YNT 217

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +L    + GK K+ +++ D+  +    PDV+TY ++I+   + S     + +L+ + + G
Sbjct: 218 ILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKG 277

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD-LEDYSSENEGDDD 182
               + T+  L+                   +EGR D  + IR L+ +  Y  +      
Sbjct: 278 CKPDVVTYNVLINGIC---------------KEGRLD--EAIRFLNHMPSYGCQ------ 314

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                                       PN   +  +++   + GR  D  + L  M R+
Sbjct: 315 ----------------------------PNVITHNIILRSMCSTGRWMDAEKFLAEMIRK 346

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 P  VT+  +++ L + G + RA  VL +M + G   N ++YN LL   C+  ++
Sbjct: 347 ---GCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKM 403

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A E L  M       PD+V+YN L+           A+   N++ ++G +P  I+Y T
Sbjct: 404 ERAIEYLDIMVSRG-CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNT 462

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++   +   +   A K+ DEM +   +K DI+ ++ LV G  R G V+EA      ++E 
Sbjct: 463 VIDGLSKVGKTDDAIKLLDEM-KGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEM 521

Query: 423 GFYPNVATYGSLANGISLARKPGEAL 448
           G  PN  TY S+  G+  AR+   A+
Sbjct: 522 GVKPNAITYNSIMLGLCKARQTVRAI 547



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 151/351 (43%), Gaps = 54/351 (15%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           + +P+   Y T+++   + G++ + + +L    RQ     +PD +TYT ++ A  K   +
Sbjct: 207 SVSPDVVTYNTILRTLCDSGKLKEAMEVL---DRQMQRECYPDVITYTILIEATCKESGV 263

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
            +A ++L EM   G   + +TYN+L+ G C++ ++D+A   L  M      +P+V+++NI
Sbjct: 264 GQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYG-CQPNVITHNI 322

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-----------LSSQPKLA 376
           ++           A  F  EM  +G +P+ +++  L+               L   P+  
Sbjct: 323 ILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHG 382

Query: 377 --------NKVFDEMLRDPRVK---------------VDIVAWNMLVEGYCRMGLVEEAK 413
                   N +   + +D +++                DIV +N L+   C+ G V+ A 
Sbjct: 383 CTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 442

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            I+ ++   G  P + TY ++ +G+S   K  +A+ L  E+K +                
Sbjct: 443 EILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGK---------------- 486

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            LKPD      L     R     +A+     +EE G+ PN   Y  I + +
Sbjct: 487 GLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGL 537



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 157/384 (40%), Gaps = 58/384 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R  Y P V  ++ ++   A   + G  +++KL D +  +             KPD   
Sbjct: 239 MQRECY-PDVITYTILIE--ATCKESGVGQAMKLLDEMRDK-----------GCKPDVVT 284

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N     G+  + ++  + M  +G +P+V+T+N++++      R       L  ++
Sbjct: 285 YNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMI 344

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCK----- 163
             G +  + TF  L+      G +  A  +++ M +                +CK     
Sbjct: 345 RKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKME 404

Query: 164 -IIRELDL-------EDYSSENE-----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
             I  LD+        D  + N        D   D   E L  N +      P+L     
Sbjct: 405 RAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL--NQLGSKGCSPVLIT--- 459

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
                Y T++ G    G+  D +++L  M+ +      PD +TY+T+V  L + G +D A
Sbjct: 460 -----YNTVIDGLSKVGKTDDAIKLLDEMKGK---GLKPDIITYSTLVGGLSREGKVDEA 511

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                ++  +GV  N ITYN ++ G C+  Q  +A + L  M      +P   SY ILI+
Sbjct: 512 IAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARG-CKPTETSYMILIE 570

Query: 331 GFILIDDSAGALTFFNEMRARGIA 354
           G      +  AL   NE+ +RG+ 
Sbjct: 571 GLAYEGLAKEALELLNELCSRGVV 594


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 209/457 (45%), Gaps = 38/457 (8%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           R G +P V +++ ++S L   G  G V E++K F+ + K            D+ P+ + Y
Sbjct: 368 RKGCIPSVVSYNCILSCL---GRKGQVDEALKKFEEMKK------------DAIPNLSTY 412

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N +++     GK +  L + D M + G  P+V+T N+M+    +A R      + E +  
Sbjct: 413 NIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDH 472

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
                   T+ SL+      G ++ A  + + M +  +    ++    + ++     G  
Sbjct: 473 KTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK--CGRK 530

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMR 240
           +D  +++ ++L    +P     LL  T+            G + +GR +   ++ LG + 
Sbjct: 531 EDGHKIYNEMLRLGCSPD---LLLLNTYMD-----CVFKAGEIEKGRALFQEIKNLGFI- 581

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD  +YT ++  LVKAG    A ++   M   G   +   YN ++ G+C+  
Sbjct: 582 --------PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSG 633

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++KA +LL EM      EP VV+Y  +IDG   ID    A   F E +++GI    + Y
Sbjct: 634 KVNKAYQLLEEMKTKGH-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIY 692

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           ++L+  F    +   A  + +E+++   +  ++  WN L++   +   + EA    + MK
Sbjct: 693 SSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYTWNCLLDALVKAEEISEALVCFQSMK 751

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +    PN  TY  L +G+   RK  +A + W+E++++
Sbjct: 752 DLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ 788



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 109/497 (21%), Positives = 211/497 (42%), Gaps = 44/497 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVVKRVRKFSD 47
           M +  + P   A++ ++  L+ S D              G   +V LF  +++   +   
Sbjct: 191 MRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGR 250

Query: 48  PD--------IVSDS-KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            D        + S+S +PD   YN  ++     GK     + F +M   G   D +TY  
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTS 310

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           MI +  +A R +  V + E + +     C   + +++  Y   G  E A ++++  R+ R
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLE--RQRR 368

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
           +     +   +        +G  D+  + FE++  ++I   S   ++        ++ T 
Sbjct: 369 KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETA 428

Query: 219 L-----MKG---YMNEGRVSDTVRMLGAMRRQEDNAS----------HPDHVTYTTVVSA 260
           L     MK    + N   V+  V  L   +R +D  S           PD VTY +++  
Sbjct: 429 LVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L + G +D A ++  +M       N + Y  L++ + +  + +   ++  EM       P
Sbjct: 489 LGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLR-LGCSP 547

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D++  N  +D      +       F E++  G  P   SYT L+     +     A ++F
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELF 607

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             M ++    +D  A+N +++G+C+ G V +A +++E MK  G  P V TYGS+ +G++ 
Sbjct: 608 YTM-KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAK 666

Query: 441 ARKPGEALLLWKEIKER 457
             +  EA +L++E K +
Sbjct: 667 IDRLDEAYMLFEEAKSK 683



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +A N  ++TTL++ +  EGRV   + +L  M+    N+  PD V Y   +    KAG +D
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMK---SNSLEPDVVLYNVCIDCFGKAGKVD 287

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +   EM   G+  + +TY  ++   C+  ++++A EL   M D  K  P   +YN +
Sbjct: 288 MAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHM-DQNKQVPCAYAYNTM 346

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G+ +      A +     R +G  P+ +SY  ++       Q   A K F+EM +D  
Sbjct: 347 IMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA- 405

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              ++  +N++++  C+ G +E A  + + MK+ G +PNV T   + + +  A++  +A 
Sbjct: 406 -IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDAC 464

Query: 449 LLWKEIKER---------CEVKKEGVNADSDLPPPLKPDEELLDA 484
            +++ +  +         C +  EG+     +    K  E++LDA
Sbjct: 465 SIFEGLDHKTCRPDAVTYCSL-IEGLGRHGRVDEAYKLYEQMLDA 508



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/478 (19%), Positives = 201/478 (42%), Gaps = 56/478 (11%)

Query: 7   LPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSDPDIVSD 53
           +P++  ++ ++  L  +G             D G   +V   +++V R+ K    D    
Sbjct: 406 IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACS 465

Query: 54  ---------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
                     +PD   Y +++      G+  +  +L++QM +    P+ + Y  +I+   
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRR 159
           +  RK     +   +L +G +  +    + +      G++E    + Q ++        R
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDAR 585

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
               +I  L    ++ E         E+F  +                    ++R Y T+
Sbjct: 586 SYTILIHGLVKAGFAHEAY-------ELFYTMKEQGC-------------VLDTRAYNTV 625

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G+   G+V+   ++L  M+ +      P  VTY +V+  L K   +D A  +  E   
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTK---GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 682

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G+  N + Y+ L+ G+ +  +ID+A  ++ E+     + P+V ++N L+D  +  ++ +
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYTWNCLLDALVKAEEIS 741

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK--VFDEMLRDPRVKVDIVAWN 397
            AL  F  M+     P  I+Y+ L+       + +  NK  VF + ++    K ++  + 
Sbjct: 742 EALVCFQSMKDLKCTPNYITYSILIHGLC---KIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            ++ G  + G + EA  + E+ KE G   + A Y ++  G+S A +  +A  L++E +
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEAR 856



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 99/473 (20%), Positives = 193/473 (40%), Gaps = 51/473 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P  +AY  ++ A +        L LF QM E G   +V  +  +I++ AR  R    + 
Sbjct: 197 RPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALS 256

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+ +    +   +  +   +  +   G +++A      M+            L L+D +
Sbjct: 257 LLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKA---------NGLVLDDVT 307

Query: 175 SEN------EGDD-DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
             +      + D  ++  E+FE +  N   P +               Y T++ GY   G
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYA-------------YNTMIMGYGMAG 354

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           +  D   +L    RQ      P  V+Y  ++S L + G +D A +   EM +  +P N  
Sbjct: 355 KFEDAYSLL---ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLS 410

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYNI++   C+  +++ A  ++R+   DA + P+V++ NI++D          A + F  
Sbjct: 411 TYNIMIDMLCKAGKLETAL-VVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEG 469

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           +  +   P  ++Y +L++      +   A K++++ML D     + V +  L+  + + G
Sbjct: 470 LDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQML-DANQIPNAVVYTSLIRNFFKCG 528

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
             E+  +I   M   G  P++    +  + +  A +  +   L++EIK            
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN----------- 577

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    PD      L    V+A F  +A E+   M+E G   +   Y  +
Sbjct: 578 -----LGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 135/350 (38%), Gaps = 67/350 (19%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P  ++++ ++  L  +G     E+ +LF  + ++               DT AYN V
Sbjct: 579 GFIPDARSYTILIHGLVKAG--FAHEAYELFYTMKEQ-----------GCVLDTRAYNTV 625

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K  QL ++M   G +P V+TY  +I   A+  R      + E     GI
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            L +  + SL+    GFG +            GR D   +I E                 
Sbjct: 686 ELNVVIYSSLID---GFGKV------------GRIDEAYLIME----------------- 713

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              L+ K   PN   +  L+   +    +S+ +    +M+   D
Sbjct: 714 ------------------ELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK---D 752

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+++TY+ ++  L K    ++A     EM + G   N  TY  ++ G  +   I +
Sbjct: 753 LKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE 812

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           A  L  +  +   +  D   YN +I+G    + ++ A   F E R +G +
Sbjct: 813 ADTLFEKFKEKGGV-ADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCS 861



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 126/288 (43%), Gaps = 9/288 (3%)

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S++NE      D V + L       S E  L      PN  +   +++   +   V++ V
Sbjct: 58  SAKNENKRQVIDSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKD---VNNAV 114

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV-PANRITYNIL 292
                  R  D A   +   Y +++  + +    +   Q+L EM+  G  P+N     I+
Sbjct: 115 NYFRWAERLTDRAHCRE--AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIV 172

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L  + +  ++ +A   ++ M    K  P   +Y  LI       DS   LT F +M+  G
Sbjct: 173 L-SFIKSRKLREAFTFIQTMRK-LKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG 230

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            A     +TTL++ FA   +   A  + DEM +   ++ D+V +N+ ++ + + G V+ A
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEM-KSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            +    MK NG   +  TY S+   +  A +  EA+ L++ + +  +V
Sbjct: 290 WKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV 337



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 59/311 (18%), Positives = 113/311 (36%), Gaps = 66/311 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +   +A++TV+     SG              V +  +  +       +P    
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGK-------------VNKAYQLLEEMKTKGHEPTVVT 656

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y +V++  A + +  +   LF++    G + +V+ Y+ +I    +  R      ++E ++
Sbjct: 657 YGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELM 716

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+T  + T+  L+ A V   ++  A    Q+M+             DL          
Sbjct: 717 QKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK-------------DL---------- 753

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                    K  PN I                   Y+ L+ G     + +        M+
Sbjct: 754 ---------KCTPNYIT------------------YSILIHGLCKIRKFNKAFVFWQEMQ 786

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q      P+  TYTT++S L KAG++  A  +  +    G  A+   YN +++G     
Sbjct: 787 KQ---GFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNAN 843

Query: 301 QIDKAKELLRE 311
           +   A  L  E
Sbjct: 844 RASDAYRLFEE 854


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 212/505 (41%), Gaps = 79/505 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN V+NAC   G  KK L+L  +M E G  PD++T+N+++      ++    +  
Sbjct: 79  PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISY 138

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +    +T    T   ++   V  G    A  +  +MRE RR  C      D+  Y+S
Sbjct: 139 FEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE-RRTKCPP----DVVTYTS 193

Query: 176 ENE-----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   G  ++   +F+ ++   +              PN   Y +L+  Y + G   
Sbjct: 194 IMHSYCIYGQVENCKAIFDLMVAEGVK-------------PNIVAYNSLLGAYASRGMHR 240

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + + +   +++   N   PD V+YT++++A  ++   ++AR+V  +M +     N+++YN
Sbjct: 241 EALAIFNLIKK---NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYN 297

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS-------------------------- 324
            L+  Y     + +A  LL EM  D  I+PDVVS                          
Sbjct: 298 ALIDAYGSAGMLKEAVGLLHEMEKDG-IQPDVVSISTLLAACGRCRQITRIETILEAARS 356

Query: 325 ---------YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
                    YN  I  ++   D   AL  +  MR   + P  ++Y  L+   +   +   
Sbjct: 357 RGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTE 416

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           + + F++M+ D +V      ++ L+  Y + G + EA+     MK++G +P+V TY +L 
Sbjct: 417 SLRFFEDMV-DSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLI 475

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
              +       A  L+KE++         VN        + PD  +  +L +   +    
Sbjct: 476 QAYNAGGGWKRAWDLFKEME---------VNG-------IPPDAIICSSLMEAFNKGGEP 519

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            + L+++  M++  IP N+  Y +I
Sbjct: 520 ERVLQLMEFMKKKSIPLNQKSYFEI 544



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 185/440 (42%), Gaps = 73/440 (16%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           LF +M E+  KPD   YN +I   +RA +    + ++E +L   I    TT+ +++ A  
Sbjct: 33  LFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACG 92

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             G+ + A            ++CK                          K+  N + P 
Sbjct: 93  AAGNWKKA-----------LELCK--------------------------KMTENGVGPD 115

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                       ++ + + L  G      +S    M GA      N +  D  T   ++ 
Sbjct: 116 ---------LVTHNIVLSALKNGAQYSKAISYFEIMKGA------NVT-SDTFTLNIIIH 159

Query: 260 ALVKAGSMDRARQVLAEM--TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
            LVK G    A ++   M   R   P + +TY  ++  YC   Q++  K +   M  +  
Sbjct: 160 CLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEG- 218

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           ++P++V+YN L+  +        AL  FN ++  G+ P  +SYT+L+ A+  S+QP+ A 
Sbjct: 219 VKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAR 278

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +VF++M ++   K + V++N L++ Y   G+++EA  ++  M+++G  P+V +  +L   
Sbjct: 279 EVFNKMKKNS-CKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAA 337

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
               R+      + +  + R  +    V  +S +   L        +  D       + K
Sbjct: 338 CGRCRQITRIETILEAARSR-GIDLNTVAYNSGIKSYL--------SFGD-------YEK 381

Query: 498 ALEIVACMEEHGIPPNKTKY 517
           ALE+   M E  + P+   Y
Sbjct: 382 ALELYTSMRESNVKPDAVTY 401



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/481 (22%), Positives = 207/481 (43%), Gaps = 72/481 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS-------- 52
           M+  G  P++ A+++++   A+ G     E++ +F+++ K   +   PDIVS        
Sbjct: 214 MVAEGVKPNIVAYNSLLGAYASRGMHR--EALAIFNLIKKNGLR---PDIVSYTSLLNAY 268

Query: 53  -------------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
                                KP+  +YNA+++A  + G  K+ + L  +M + G +PDV
Sbjct: 269 GRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDV 328

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           ++ + ++  C R  +   +  +LE     GI L    + S + +Y+ FGD E A  +  +
Sbjct: 329 VSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTS 388

Query: 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
           MRE       +   + +    S   G   +    FE ++ + ++ + E            
Sbjct: 389 MRESNVKPDAVTYNILIS--GSSKLGKYTESLRFFEDMVDSKVSSTKE------------ 434

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
            +Y++L+  Y+ +G++S+      +M++   +   PD +TYTT++ A    G   RA  +
Sbjct: 435 -VYSSLIYSYIKQGKLSEAESTFSSMKK---SGCFPDVLTYTTLIQAYNAGGGWKRAWDL 490

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM   G+P + I  + L++ + +  + ++  +L+ E      I  +  SY  +I    
Sbjct: 491 FKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLM-EFMKKKSIPLNQKSYFEIIASCT 549

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLAN--KVFDEMLRDPRV- 389
           +I D   A      + +   + + IS  TL      L    K  N  K+F +M+      
Sbjct: 550 MIRDWKTASEMIEYLDS---SLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTV 606

Query: 390 ---KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP------NVATYGSLANGISL 440
                 +V  N+LV G  R  +      +++ M+++G +P      NV  Y    NG+  
Sbjct: 607 GLSTYAVVLRNLLVVGKWRKYI-----EVLQWMEDSGVHPTLYMFQNVLPYIWRENGMDF 661

Query: 441 A 441
           A
Sbjct: 662 A 662



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 137/314 (43%), Gaps = 23/314 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +   + IY  +++ Y    +V D  R  G     ++    PD   Y +++ A  +AG   
Sbjct: 7   YCARNDIYGMMIRLYARHNQV-DQAR--GLFFEMQEWRCKPDADIYNSLIHAHSRAGQWR 63

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  ++ +M R  +P  R TYN ++          KA EL ++M ++  + PD+V++NI+
Sbjct: 64  WAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENG-VGPDLVTHNIV 122

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +         + A+++F  M+   +     +   ++       Q   A ++F+ M R+ R
Sbjct: 123 LSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSM-RERR 181

Query: 389 VKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
            K   D+V +  ++  YC  G VE  K I + M   G  PN+  Y SL    +      E
Sbjct: 182 TKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHRE 241

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           AL ++  IK      K G          L+PD     +L +   R+A   KA E+   M+
Sbjct: 242 ALAIFNLIK------KNG----------LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMK 285

Query: 507 EHGIPPNKTKYKKI 520
           ++   PNK  Y  +
Sbjct: 286 KNSCKPNKVSYNAL 299



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 104/514 (20%), Positives = 209/514 (40%), Gaps = 86/514 (16%)

Query: 27  GPVESVK-LFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85
           G VE+ K +FD++V               KP+  AYN++L A A+ G  ++ L +F+ + 
Sbjct: 202 GQVENCKAIFDLMV-----------AEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIK 250

Query: 86  EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           + G +PD+++Y  ++    R+++      V  ++ +        ++ +L+ AY   G L+
Sbjct: 251 KNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLK 310

Query: 146 IAETIVQAM-REG-RRDV------------CKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
            A  ++  M ++G + DV            C+ I  ++    ++ + G D          
Sbjct: 311 EAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGID---------- 360

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
                               N+  Y + +K Y++ G     + +  +MR  E N   PD 
Sbjct: 361 -------------------LNTVAYNSGIKSYLSFGDYEKALELYTSMR--ESNVK-PDA 398

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VTY  ++S   K G    + +   +M    V + +  Y+ L+  Y +Q ++ +A+     
Sbjct: 399 VTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSS 458

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M       PDV++Y  LI  +        A   F EM   GI P  I  ++LM+AF    
Sbjct: 459 MKKSGCF-PDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGG 517

Query: 372 QPKLANKVFDEMLR-----DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
           +P+   ++ + M +     + +   +I+A   ++  +      + A  +IE +  +    
Sbjct: 518 EPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDW------KTASEMIEYLDSSLSSI 571

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           +V T   + N +    K    + L+ ++   C        A                 L 
Sbjct: 572 SVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTVGLSTYA---------------VVLR 616

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++ V    +RK +E++  ME+ G+ P    ++ +
Sbjct: 617 NLLVVGK-WRKYIEVLQWMEDSGVHPTLYMFQNV 649


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 124/543 (22%), Positives = 222/543 (40%), Gaps = 73/543 (13%)

Query: 16  VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPK 75
           ++ R   S   G +   + F +  + V +   P       P T  +     A   LG+  
Sbjct: 124 LLQRRPVSASQGGLPRARRFALYRRMVHRDRVP-------PTTFTFGVAARALCRLGRAD 176

Query: 76  KFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSL 134
           + L L   M   G  PD + Y  +I  LC +         + E +L MG    + TF  +
Sbjct: 177 EALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLL-MGCAADVNTFDDV 235

Query: 135 VAAYVGFGDL-EIAETIVQAMREG-----------RRDVCKI------------IRELDL 170
           V    G G + E A  + + M +G            + +C++            + EL++
Sbjct: 236 VRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNV 295

Query: 171 EDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
             +++       EG   +  E++E +               K   P++  Y+ LM G   
Sbjct: 296 VLFNTVIGGCLAEGKLAEATELYETMGL-------------KGCQPDAHTYSILMHGLCK 342

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            GR+   VR+L   R  E     P+ VTYT V+ +  K G  D  R +L EM+  G+  N
Sbjct: 343 LGRIGSAVRLL---REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 399

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
              YN ++   C+  ++D+A  L++EM       PD+ SYN +I      +    A   F
Sbjct: 400 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQG-CNPDICSYNTIIYHLCNNEQMEEAEHMF 458

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
             +   G+    I+Y T++ A     + + A ++  EM+      +D+V++N L++  C+
Sbjct: 459 ENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH-GCSLDVVSYNGLIKAMCK 517

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
            G V+ +  ++E M E G  PN  +Y  L + +   R+  +AL          E+ K+ +
Sbjct: 518 DGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL----------ELSKQML 567

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
           N        L PD    + L +   +  +   AL ++  +    + P+   Y  I +  H
Sbjct: 568 NQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITY-NILISWH 620

Query: 526 SRM 528
            ++
Sbjct: 621 CKV 623



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 191/467 (40%), Gaps = 68/467 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G +P    + TV+  L   G  G  E+  L + +           ++     D   
Sbjct: 185 MARHGCVPDAVLYQTVIHALCDQG--GVTEAATLLNEM-----------LLMGCAADVNT 231

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++ V+     LG+ ++  +L D+M   G  P V+TY  +++   R  +      +L R+ 
Sbjct: 232 FDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVP 291

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--------------------REGR-R 159
           E+ + L    F +++   +  G L  A  + + M                    + GR  
Sbjct: 292 ELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIG 347

Query: 160 DVCKIIRELDLEDYSSE------------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPK 207
              +++RE++ + ++                G  DD   + E++               K
Sbjct: 348 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSA-------------K 394

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
               NS+ Y  ++     +GR+ + + ++  MR Q  N   PD  +Y T++  L     M
Sbjct: 395 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCN---PDICSYNTIIYHLCNNEQM 451

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           + A  +   +   GV AN ITYN ++    +  +   A  L +EM        DVVSYN 
Sbjct: 452 EEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-CSLDVVSYNG 510

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI       +   +L    EM  +GI P  +SY  L+       + + A ++  +ML + 
Sbjct: 511 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML-NQ 569

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            +  DIV +N L+ G C+MG +  A  ++E++     +P++ TY  L
Sbjct: 570 GLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNIL 616



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 58/327 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G+ P+V  ++ V+     +G         ++D     + + S   +  +S+     
Sbjct: 356 MEKKGFAPNVVTYTIVLHSFCKNG---------MWDDTRALLEEMSAKGLTLNSQ----G 402

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++ A    G+  + + L  +M   G  PD+ +YN +I       +      + E +L
Sbjct: 403 YNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLL 462

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-RDVCKIIRELDLEDYSSE--- 176
           E G+     T+ +++ A                +R+GR +D  ++ +E+ L   S +   
Sbjct: 463 EEGVVANGITYNTIIHAL---------------LRDGRWQDAVRLAKEMILHGCSLDVVS 507

Query: 177 ---------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
                     +G+ D    + E++    I P             N+  Y  L+     E 
Sbjct: 508 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKP-------------NNVSYNILISELCKER 554

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           RV D + +   M  Q      PD VTY T+++ L K G M  A  +L ++    V  + I
Sbjct: 555 RVRDALELSKQMLNQ---GLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDII 611

Query: 288 TYNILLKGYCQQLQIDKAKELL-REMA 313
           TYNIL+  +C+   +D A  LL R MA
Sbjct: 612 TYNILISWHCKVRLLDDAAMLLNRAMA 638



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 88/239 (36%), Gaps = 24/239 (10%)

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           L R M    ++ P   ++ +       +  +  AL     M   G  P  + Y T++ A 
Sbjct: 145 LYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHAL 204

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                   A  + +EML       D+  ++ +V G C +G V EA R+++RM   G  P 
Sbjct: 205 CDQGGVTEAATLLNEMLLM-GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPG 263

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TYG L  G+   R+  EA  +   + E   V                    L + +  
Sbjct: 264 VMTYGFLLQGLCRVRQADEARAMLGRVPELNVV--------------------LFNTVIG 303

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERK 546
            C+      +A E+   M   G  P+   Y    + MH      +  S  R  R  E+K
Sbjct: 304 GCLAEGKLAEATELYETMGLKGCQPDAHTYS---ILMHGLCKLGRIGSAVRLLREMEKK 359


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 177/386 (45%), Gaps = 22/386 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARASRKHLLVF 114
           P+   YN V+      G+ +  +++  +M E G   PD  TY  +I    +  +      
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATK 204

Query: 115 VLERILEMG-ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           V + +L  G +      + +L+  Y   G+LE+A      M +  R V   +   +L  +
Sbjct: 205 VFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVD--RGVSMTVATYNLFVH 262

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           +   EG   +   + E++               K  AP++  Y  L+ GY  EG+    +
Sbjct: 263 TLFMEGRAAEAHALVEEMGE-------------KGLAPDAFTYNILINGYCKEGKEKKAM 309

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +M   M  +   A+    VTYT+++ AL   G +    ++  +  R G+  +   YN L+
Sbjct: 310 KMFEVMVGKGIRATV---VTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALI 366

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
             +C    +D+A E++ EM +  +I PD V+YN L+ G  L+     A     EM  RGI
Sbjct: 367 NSHCTGGDMDRAFEIMGEM-EKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGI 425

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  +SY TL+  +++    K A KV DEM+        ++ +N +++G C  G   +A+
Sbjct: 426 QPDLVSYNTLISGYSMKGDIKDAVKVRDEMM-GKGFNPTLLTYNAMIKGLCLNGQGGDAE 484

Query: 414 RIIERMKENGFYPNVATYGSLANGIS 439
            +++ M  NG  P+ +TY SL  G++
Sbjct: 485 DLVKEMVGNGITPDDSTYISLIEGLT 510



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 173/432 (40%), Gaps = 92/432 (21%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVL 116
           T  +N +L      GKP + L+L  QM      P+ +TYN +I   CAR   +  +  + 
Sbjct: 116 TTTFNIMLRHLCTAGKPVRALELLRQM----PSPNAVTYNTVIAGFCARGRVQAGIEIMR 171

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E     GI     T+ ++++ +                       CK+            
Sbjct: 172 EMRERGGIAPDKYTYATVISGW-----------------------CKV------------ 196

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G  +D  +VF+++L                  PN+ +Y  L+ GY ++G +   +R  
Sbjct: 197 --GKVEDATKVFDEMLTEG------------KVEPNAVMYNALIGGYCDQGNLEVALRYR 242

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
           G M    D        TY   V  L   G    A  ++ EM   G+  +  TYNIL+ GY
Sbjct: 243 GEM---VDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGY 299

Query: 297 CQQLQIDKAKELLREMA-------------------------------DDA---KIEPDV 322
           C++ +  KA ++   M                                +DA    I PD+
Sbjct: 300 CKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDL 359

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
             YN LI+      D   A     EM  + I P  ++Y TLM+   L  +   A  + +E
Sbjct: 360 FMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEE 419

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M +   ++ D+V++N L+ GY   G +++A ++ + M   GF P + TY ++  G+ L  
Sbjct: 420 MTKR-GIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNG 478

Query: 443 KPGEALLLWKEI 454
           + G+A  L KE+
Sbjct: 479 QGGDAEDLVKEM 490



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 38/289 (13%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL +  +PN+  Y T++ G+   GRV   + ++  MR  E     PD  TY TV+S   K
Sbjct: 138 LLRQMPSPNAVTYNTVIAGFCARGRVQAGIEIMREMR--ERGGIAPDKYTYATVISGWCK 195

Query: 264 AGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMAD-------- 314
            G ++ A +V  EM   G V  N + YN L+ GYC Q  ++ A     EM D        
Sbjct: 196 VGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVA 255

Query: 315 --------------------------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
                                     +  + PD  +YNILI+G+        A+  F  M
Sbjct: 256 TYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVM 315

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             +GI  T ++YT+L+ A ++    +  +++F++ +R   ++ D+  +N L+  +C  G 
Sbjct: 316 VGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRR-GIRPDLFMYNALINSHCTGGD 374

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++ A  I+  M++    P+  TY +L  G+ L  +  EA  L +E+ +R
Sbjct: 375 MDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKR 423



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 18/273 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           P+ VTY TV++     G +    +++ EM  R G+  ++ TY  ++ G+C+  +++ A +
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATK 204

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +  EM  + K+EP+ V YN LI G+    +   AL +  EM  RG++ T  +Y   +   
Sbjct: 205 VFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTL 264

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            +  +   A+ + +EM  +  +  D   +N+L+ GYC+ G  ++A ++ E M   G    
Sbjct: 265 FMEGRAAEAHALVEEM-GEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRAT 323

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY SL + +S+     E   L+ +   R                 ++PD  + +AL +
Sbjct: 324 VVTYTSLIHALSMKGMVQETDRLFNDAVRRG----------------IRPDLFMYNALIN 367

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    +A EI+  ME+  I P+   Y  +
Sbjct: 368 SHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTL 400



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 6/186 (3%)

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           + A++ R+ +P +  T+NI+L+  C   +  +A ELLR+M       P+ V+YN +I GF
Sbjct: 103 LFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMP-----SPNAVTYNTVIAGF 157

Query: 333 ILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                    +    EMR RG IAP K +Y T++  +    + + A KVFDEML + +V+ 
Sbjct: 158 CARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEP 217

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           + V +N L+ GYC  G +E A R    M + G    VATY    + + +  +  EA  L 
Sbjct: 218 NAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALV 277

Query: 452 KEIKER 457
           +E+ E+
Sbjct: 278 EEMGEK 283



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 158/376 (42%), Gaps = 53/376 (14%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSK--PDTA 59
           R G  P    ++TV+S     G    VE + K+FD            +++++ K  P+  
Sbjct: 176 RGGIAPDKYTYATVISGWCKVGK---VEDATKVFD------------EMLTEGKVEPNAV 220

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK---LCARASRKHLLVFVL 116
            YNA++    + G  +  L+   +M + G    V TYN+ +    +  RA+  H LV   
Sbjct: 221 MYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALV--- 277

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGD----LEIAETIV-QAMREGRRDVCKIIRELDLE 171
           E + E G+     T+  L+  Y   G     +++ E +V + +R        +I  L ++
Sbjct: 278 EEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMK 337

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
               E        D +F   +   I P             +  +Y  L+  +   G +  
Sbjct: 338 GMVQET-------DRLFNDAVRRGIRP-------------DLFMYNALINSHCTGGDMDR 377

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              ++G M ++      PD VTY T++  L   G +D AR ++ EMT+ G+  + ++YN 
Sbjct: 378 AFEIMGEMEKKRIT---PDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNT 434

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GY  +  I  A ++  EM       P +++YN +I G  L      A     EM   
Sbjct: 435 LISGYSMKGDIKDAVKVRDEMMGKG-FNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGN 493

Query: 352 GIAPTKISYTTLMKAF 367
           GI P   +Y +L++  
Sbjct: 494 GITPDDSTYISLIEGL 509


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 196/464 (42%), Gaps = 75/464 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            P T  +N V+      G+ +  L ++ QM++    PD LTY  ++   ++A R    V 
Sbjct: 2   NPGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQ 60

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL+ ++               A +V   D      +VQ++  G R               
Sbjct: 61  VLQEMVS--------------ARHVP--DNTTLTVVVQSLCLGDRV-------------- 90

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                  DD  E+ E++L              +  A N+  Y+ L+ G     R+ + V 
Sbjct: 91  -------DDARELVEEMLH-------------RGMAANAITYSALVDGLCKCERLDEAVA 130

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M    +    P  VTY ++++   +A  +D A   + +M   G   + ITY  L+ 
Sbjct: 131 LVETM---AERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIG 187

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C+   + +  ELL E+       PD+V+Y+ +IDG         A+  F EM     A
Sbjct: 188 GFCKSRDVGRGLELLGEVTRRG-FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSC---A 243

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT I+Y +L+  +  +     A ++  +M+ D +   D+V +  L+  +C+MG +++A  
Sbjct: 244 PTAITYNSLIGGYCRAGDMDEAIRLLGKMV-DDKCAPDVVTYTTLMSAFCKMGRLDDAYE 302

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           + ++M  N   P+V T+ SL +G+    +  +AL L +EI  R              PP 
Sbjct: 303 LFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR------------GCPPT 350

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           +     ++D       +A   RKA E+VA     G  PN   Y 
Sbjct: 351 IYTYNCVVDGYC----KANQVRKAEELVADFRSRGFVPNTVTYN 390



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 184/401 (45%), Gaps = 35/401 (8%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A+++      +  + + L + M E G  P V+TYN +I    RA R       +E+++
Sbjct: 112 YSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMV 171

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
             G    + T+ +L+  +    D+    E + +  R G           D+  YS+  +G
Sbjct: 172 AEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTP--------DIVTYSTVIDG 223

Query: 180 DDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                   D  ++FE++                + AP +  Y +L+ GY   G + + +R
Sbjct: 224 LCKAGRLRDAVDIFEEM----------------SCAPTAITYNSLIGGYCRAGDMDEAIR 267

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +LG M    D+   PD VTYTT++SA  K G +D A ++  +M    +  + +T+  L+ 
Sbjct: 268 LLGKM---VDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVD 324

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C + +++ A ELL E+       P + +YN ++DG+   +    A     + R+RG  
Sbjct: 325 GLCGEGRMEDALELLEEITRRG-CPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFV 383

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-VKVDIVAWNMLVEGYCRMGLVEEAK 413
           P  ++Y  L+     + +   A +  D++  +       +  + ++++  CR G  ++A 
Sbjct: 384 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 443

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +  E M + G+ P  AT+ ++   +  A +P +A  L +E+
Sbjct: 444 QFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEM 484



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 176/388 (45%), Gaps = 33/388 (8%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V     F +  +     PD   Y A++          + L+L  ++   G  PD++TY+ 
Sbjct: 160 VDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYST 219

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I    +A R    V + E   EM       T+ SL+  Y   GD++ A  ++  M +  
Sbjct: 220 VIDGLCKAGRLRDAVDIFE---EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVD-- 274

Query: 159 RDVCKIIRELDLEDYSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
            D C      D+  Y++        G  DD  E+F++++ N ++             P+ 
Sbjct: 275 -DKCAP----DVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLS-------------PDV 316

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             +T+L+ G   EGR+ D + +L  + R+      P   TY  VV    KA  + +A ++
Sbjct: 317 VTFTSLVDGLCGEGRMEDALELLEEITRR---GCPPTIYTYNCVVDGYCKANQVRKAEEL 373

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS-YNILIDGF 332
           +A+    G   N +TYNIL+ G C+  + D+A + L ++  +    P  V+ Y I++D  
Sbjct: 374 VADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDAL 433

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
                +  A+ F+ EM  RG  P   ++ T++ A   + QP+ A+++ +EM++       
Sbjct: 434 CRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTP-G 492

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMK 420
               + +V  YCR G++++A  +   ++
Sbjct: 493 PGTCDAVVSAYCRAGMIQKADELASELR 520



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 123/313 (39%), Gaps = 38/313 (12%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R G+ P +  +STV+  L  +G                R+R   D        P    YN
Sbjct: 207 RRGFTPDIVTYSTVIDGLCKAG----------------RLRDAVDIFEEMSCAPTAITYN 250

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           +++      G   + ++L  +M +    PDV+TY  ++    +  R      + ++++  
Sbjct: 251 SLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVAN 310

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD--LEDYSSENEGD 180
            ++  + TF SLV    G G +E A  +++ +   RR     I   +  ++ Y   N+  
Sbjct: 311 KLSPDVVTFTSLVDGLCGEGRMEDALELLEEIT--RRGCPPTIYTYNCVVDGYCKANQ-- 366

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                   E+L+ +            + F PN+  Y  L+ G    GR    ++ L  + 
Sbjct: 367 ----VRKAEELVAD---------FRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQL- 412

Query: 241 RQEDNASHPDHVT-YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
              +    P  V  Y  ++ AL + G  D A Q   EM + G      T+  ++   C+ 
Sbjct: 413 -NSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKA 471

Query: 300 LQIDKAKELLREM 312
            Q  +A ELL EM
Sbjct: 472 HQPQQAHELLEEM 484


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 204/467 (43%), Gaps = 71/467 (15%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++    +G  +K L +F+++ E G  P V++Y  +I L A+  +    + V + + 
Sbjct: 449 YHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMME 508

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   M T+  L+  +                             L L+D+++     
Sbjct: 509 SAGIKHNMKTYSMLINGF-----------------------------LKLKDWANAFA-- 537

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 +FE ++ + + P             +  +Y  +++ +   G +   + M+  M+
Sbjct: 538 ------IFEDVVKDGLKP-------------DVVLYNNIIRAFCGMGTMDRAICMVKEMQ 578

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      P   T+  ++    +AG M RA  V   M R G      T+N L+ G  ++ 
Sbjct: 579 KERHR---PTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKR 635

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q++KA E+L EMA  A + P+  +Y  ++ G+  + D+  A  +F ++R  G+     +Y
Sbjct: 636 QMEKAIEILDEMA-LAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTY 694

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S + + A  V  EM     +  +   +N+L++G+ R G V EA  ++++MK
Sbjct: 695 EALLKACCKSGRMQSALAVTKEM-SAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 753

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  P++ TY S  N      K G+ L   K ++   E++  GV          KP+ +
Sbjct: 754 QGGVKPDIHTYTSFINACC---KAGDMLRASKMME---EMETSGV----------KPNVK 797

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
               L     RA+   KAL     M+  G+ P+K  Y  +   + SR
Sbjct: 798 TYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSR 844



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 172/399 (43%), Gaps = 49/399 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   +Y  ++N  A +GK  K L++   M   G K ++ TY+++I    +         +
Sbjct: 479 PSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAI 538

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDL 170
            E +++ G+   +  + +++ A+ G G ++ A  +V+ M++ R     R    II     
Sbjct: 539 FEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPII----- 593

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSS-----------EPPLLPKTF---------- 209
             +     G+     +VF+ +  +   P+            E   + K            
Sbjct: 594 --HGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAG 651

Query: 210 -APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +PN   YTT+M GY   G   DT +      +  D     D  TY  ++ A  K+G M 
Sbjct: 652 VSPNEHTYTTIMHGYAALG---DTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQ 708

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V  EM+   +P N   YNIL+ G+ ++  + +A +L+++M     ++PD+ +Y   
Sbjct: 709 SALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGG-VKPDIHTYTSF 767

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+      D   A     EM   G+ P   +YTTL+  +A +S P+ A + F EM +   
Sbjct: 768 INACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEM-KLAG 826

Query: 389 VKVDIVAWNMLV----------EGYCRMGLVEEAKRIIE 417
           +K D   ++ L+          E Y R G++   K +IE
Sbjct: 827 LKPDKAVYHCLMTALLSRATVTEAYVRPGILSICKEMIE 865



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 24/329 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P S +YT+L+  Y   GR  D    L   R+ ++       VTY+ +V    K G+ D A
Sbjct: 339 PTSHVYTSLIHAYA-VGR--DMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAA 395

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +   E        N I Y  ++  YCQ   +D+A+ L+REM  +  I+  +  Y+ ++D
Sbjct: 396 DRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEG-IDAPIDIYHTMMD 454

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+ ++ +    LT F  ++  G AP+ +SY  L+  +A   +   A +V  +M+    +K
Sbjct: 455 GYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEV-SKMMESAGIK 513

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++  ++ML+ G+ ++     A  I E + ++G  P+V  Y ++            A+ +
Sbjct: 514 HNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICM 573

Query: 451 WKEI-KER------------------CEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            KE+ KER                   E+K+     D        P     +AL    V 
Sbjct: 574 VKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVE 633

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                KA+EI+  M   G+ PN+  Y  I
Sbjct: 634 KRQMEKAIEILDEMALAGVSPNEHTYTTI 662



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 182/450 (40%), Gaps = 45/450 (10%)

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           KP    Y +M+   AR    H      E +   GI      + SL+ AY    D+E A +
Sbjct: 303 KPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 362

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK-----------LLPNSINP 198
             + M+E   ++  +   + +  ++    G+ D  D  F++           +  N I  
Sbjct: 363 CARKMKEEGVEMSLVTYSIIVGGFA--KIGNADAADRWFKEAKDRHSHMNAIIYGNMIYA 420

Query: 199 SSEPPLLPKTFAPNSR-----------IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
             +   + +  A               IY T+M GY     V +  + L    R ++   
Sbjct: 421 YCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYT---MVGNEEKCLTVFERLKECGF 477

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P  V+Y  +++   K G + +A +V   M   G+  N  TY++L+ G+ +      A  
Sbjct: 478 APSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFA 537

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +  ++  D  ++PDVV YN +I  F  +     A+    EM+     PT  ++  ++  F
Sbjct: 538 IFEDVVKDG-LKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGF 596

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
           A + + K A  VFD M R   +   +  +N L+ G      +E+A  I++ M   G  PN
Sbjct: 597 ARAGEMKRALDVFDMMRRSGCIPT-VHTFNALILGLVEKRQMEKAIEILDEMALAGVSPN 655

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
             TY ++ +G +     G+A   + ++++      EG          L+ D    +AL  
Sbjct: 656 EHTYTTIMHGYAALGDTGKAFEYFTKLRD------EG----------LQLDVYTYEALLK 699

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            C ++   + AL +   M    IP N   Y
Sbjct: 700 ACCKSGRMQSALAVTKEMSAQNIPRNTFVY 729



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 143/349 (40%), Gaps = 43/349 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD----IVSD--- 53
           ML +G+L  +K W+   +       DG    V L++ +++        D    +V +   
Sbjct: 521 MLINGFLK-LKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQK 579

Query: 54  --SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
              +P +  +  +++  A  G+ K+ L +FD M   G  P V T+N +I       +   
Sbjct: 580 ERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEK 639

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + +L+ +   G++    T+ +++  Y   GD   A      +R+           L L+
Sbjct: 640 AIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRD---------EGLQLD 690

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-------FAPNSRIYTTLMKGYM 224
            Y+             +E LL            L  T          N+ +Y  L+ G+ 
Sbjct: 691 VYT-------------YEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWA 737

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
             G V +   ++  M++       PD  TYT+ ++A  KAG M RA +++ EM   GV  
Sbjct: 738 RRGDVWEAADLMQQMKQ---GGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKP 794

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           N  TY  L+ G+ +    +KA    +EM   A ++PD   Y+ L+   +
Sbjct: 795 NVKTYTTLIHGWARASLPEKALRCFQEM-KLAGLKPDKAVYHCLMTALL 842



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/337 (18%), Positives = 123/337 (36%), Gaps = 78/337 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG +P V  ++ ++         G VE  ++     ++  +  D   ++   P+   
Sbjct: 612 MRRSGCIPTVHTFNALIL--------GLVEKRQM-----EKAIEILDEMALAGVSPNEHT 658

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++  A LG   K  + F ++ + G + DV TY  ++K C ++ R    + V + + 
Sbjct: 659 YTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMS 718

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              I      +  L+  +   GD+  A  ++Q M++G                       
Sbjct: 719 AQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQG----------------------- 755

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P+   YT+ +      G   D +R    M 
Sbjct: 756 ---------------------------GVKPDIHTYTSFINACCKAG---DMLRASKMME 785

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E +   P+  TYTT++    +A   ++A +   EM   G+  ++  Y+ L+       
Sbjct: 786 EMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTAL---- 841

Query: 301 QIDKAKELLREMADDAKIEPDVVSY-NILIDGFILID 336
                  L R    +A + P ++S    +I+  +++D
Sbjct: 842 -------LSRATVTEAYVRPGILSICKEMIESGLIVD 871


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 186/410 (45%), Gaps = 36/410 (8%)

Query: 74  PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           P   +  +++M   GA    P++ TY+V+I  C RA R  L    L  +++ G  +   T
Sbjct: 62  PAAAVSRYNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAIT 121

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----ENEGDDDDDD 185
           F  L+           A  IV         +C++ +   + +  S     +   D++   
Sbjct: 122 FTPLLKGLCADKRTSDAMDIV---------LCRMTQLGCIPNVFSCTILLKGLCDENRSQ 172

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           E  E LL    +   + P       P+  +Y T++ G+  EG   D  +         D 
Sbjct: 173 EALE-LLQMMPDDGGDCP-------PDVVLYNTVINGFFKEG---DPDKAYATYHEMFDQ 221

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD VTY+++++AL KA +MD+A +VL  M + GV  N  TYN ++ GYC   Q+ +A
Sbjct: 222 GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEA 281

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
              L+ M  D  +EPDVV+ N+L+D          A   FN M   G+ P   +Y TL++
Sbjct: 282 IGFLKMMCSDG-VEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQ 340

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            +A        + + D M+ +  ++ +   +N+L+  Y +   V+EA  +  +M++ G  
Sbjct: 341 GYATKGALVEMHDLLDLMVWNG-IQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLS 399

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           PN   Y ++ + +    +  +A+L  K++        EG+  D  +  PL
Sbjct: 400 PNAVNYRTVIDVLCKLGRVYDAVLTLKQM------INEGLTPDIIVYTPL 443



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 169/387 (43%), Gaps = 34/387 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+   Y+ ++  C   G+          + + G + + +T+  ++K LCA       +  
Sbjct: 82  PNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 141

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGD---LEIAETIVQAMREGRRDVCKIIRELDLE 171
           VL R+ ++G   C+    S      G  D    + A  ++Q M +   D    +   +  
Sbjct: 142 VLCRMTQLG---CIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTV 198

Query: 172 DYSSENEGDDDDD----DEVFEK-LLPNSINPSSEPPLLPKTFA---------------- 210
                 EGD D       E+F++ +LP+ +  SS    L K  A                
Sbjct: 199 INGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 258

Query: 211 -PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN R Y +++ GY + G++++ +   G ++    +   PD VT   ++  L K      
Sbjct: 259 MPNCRTYNSIVHGYCSSGQLTEAI---GFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTE 315

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           AR++   MT+ G+  +  TY  LL+GY  +  + +  +LL  M  +  I+P+   +NILI
Sbjct: 316 ARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNG-IQPNHHVFNILI 374

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
             +   +    A+  F++MR +G++P  ++Y T++       +   A     +M+ +  +
Sbjct: 375 CAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEG-L 433

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRII 416
             DI+ +  L+ G+C     E+A+ +I
Sbjct: 434 TPDIIVYTPLIHGFCTCDKWEKAEELI 460



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 146/336 (43%), Gaps = 30/336 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+V + + ++  L    ++   E+++L  ++         PD   D  PD   
Sbjct: 146 MTQLGCIPNVFSCTILLKGLC--DENRSQEALELLQMM---------PDDGGDCPPDVVL 194

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N     G P K    + +M + G  PDV+TY+ +I    +A      + VL  ++
Sbjct: 195 YNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMV 254

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ S+V  Y   G L  A   ++ M     +   +   L L DY  +N   
Sbjct: 255 KNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNL-LMDYLCKNRRC 313

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +       + + NS+              P+   Y TL++GY  +G + +   +L  M 
Sbjct: 314 TE------ARKIFNSMTKCG--------LKPDITTYCTLLQGYATKGALVEMHDLLDLMV 359

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               N   P+H  +  ++ A  K   +D A  V ++M + G+  N + Y  ++   C+  
Sbjct: 360 W---NGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLG 416

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           ++  A   L++M ++  + PD++ Y  LI GF   D
Sbjct: 417 RVYDAVLTLKQMINEG-LTPDIIVYTPLIHGFCTCD 451



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 100/256 (39%), Gaps = 23/256 (8%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQ---LQIDKAKELLREMADDAKIEPDVVSYN 326
           AR V  E+ R G  A     N  L    +      + +   + R  AD+  + P++ +Y+
Sbjct: 31  ARHVFDELLRRGKGATIYGLNRALDDVARHSPAAAVSRYNRMARAGADE--VTPNLYTYS 88

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +LI                  +  +G     I++T L+K      +   A  +    +  
Sbjct: 89  VLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQ 148

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG--FYPNVATYGSLANGISLARKP 444
                ++ +  +L++G C     +EA  +++ M ++G    P+V  Y ++ NG      P
Sbjct: 149 LGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDP 208

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            +A   + E+             D  + P +     ++ AL     +A    KA+E++  
Sbjct: 209 DKAYATYHEM------------FDQGILPDVVTYSSIIAALC----KAQAMDKAMEVLNT 252

Query: 505 MEEHGIPPNKTKYKKI 520
           M ++G+ PN   Y  I
Sbjct: 253 MVKNGVMPNCRTYNSI 268


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 161/336 (47%), Gaps = 25/336 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ + + P+   YTT++ G     ++ +TV   G  ++  +    PD VTY+T++ +L K
Sbjct: 1   MVARGYQPDVHTYTTIINGLC---KIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCK 57

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A  + + M   G+  N  TYN L++G C   +  +A  +L EM     I P++V
Sbjct: 58  DRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMM-SLNIMPNIV 116

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++++LI+ F    +   A      M   G+ P  ++Y++LM  ++L ++   A K+FD M
Sbjct: 117 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVM 176

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +     K D+ ++N+L+ GYC+   + EAK++   M   G  P++ +Y +L +G+    +
Sbjct: 177 ITKG-CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGR 235

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  L+K +             + +L P L     LLD       +  +  KA  +  
Sbjct: 236 LREAHDLFKNML-----------TNGNL-PDLCTYSILLDGFC----KQGYLAKAFRLFR 279

Query: 504 CMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
            M+   + PN   Y  +       M  S++  +AR+
Sbjct: 280 AMQSTYLKPNMVMYNILI----DAMCKSRNLKEARK 311



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 5/248 (2%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K  +PN   Y +L++G  N  R  +   ML  M         P+ VT++ +++   K G+
Sbjct: 74  KGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN---IMPNIVTFSLLINIFCKEGN 130

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  AR VL  MT +GV  N +TY+ L+ GY  Q ++ +A++L   M      +PDV SYN
Sbjct: 131 VFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG-CKPDVFSYN 189

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILI+G+        A   FNEM  +G+ P  +SY TL+       + + A+ +F  ML +
Sbjct: 190 ILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN 249

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  D+  +++L++G+C+ G + +A R+   M+     PN+  Y  L + +  +R   E
Sbjct: 250 GNLP-DLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKE 308

Query: 447 ALLLWKEI 454
           A  L+ E+
Sbjct: 309 ARKLFSEL 316



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 161/384 (41%), Gaps = 67/384 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  GY P V  ++T+++ L   G+   V +  LF       +K  +    +  +PD   
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGE--TVAAAGLF-------KKMGE----AGCQPDVVT 47

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ ++++     +  + L +F  M   G  P++ TYN +I+     SR      +L  ++
Sbjct: 48  YSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMM 107

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            + I   + TF  L+  +   G++  A           R V K + E+ +E         
Sbjct: 108 SLNIMPNIVTFSLLINIFCKEGNVFEA-----------RGVLKTMTEMGVE--------- 147

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         PN   Y++LM GY  +  V +  ++   M 
Sbjct: 148 ------------------------------PNVVTYSSLMNGYSLQAEVFEARKLFDVMI 177

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD  +Y  +++   KA  +  A+Q+  EM   G+  + ++YN L+ G CQ  
Sbjct: 178 TK---GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 234

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +A +L + M  +  + PD+ +Y+IL+DGF      A A   F  M++  + P  + Y
Sbjct: 235 RLREAHDLFKNMLTNGNL-PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMY 293

Query: 361 TTLMKAFALSSQPKLANKVFDEML 384
             L+ A   S   K A K+F E+ 
Sbjct: 294 NILIDAMCKSRNLKEARKLFSELF 317


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 213/499 (42%), Gaps = 64/499 (12%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           + PD +AY+AV++ACA  G+ K  +    +M   G  PD  +Y   I  CAR  R  + +
Sbjct: 64  AAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIAL 123

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L  +L   +T  +  + S + +    G  EIA ++V+ M         +    D+  Y
Sbjct: 124 DLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMA-------TVGLAPDVISY 176

Query: 174 SSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           SS        G  ++  E+FE +  + +             AP+   Y + +    N GR
Sbjct: 177 SSAISACGRGGRWEEALELFEDMRTSGV-------------APDVITYGSAIAACANGGR 223

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
             + V +L   R+       P+ ++Y++V++A  K G    A  +L EM  + +  N IT
Sbjct: 224 WKEAVSLL---RKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIIT 280

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN  +    +  +  +A +LLREM     + PDVVSY+ +ID     D    A+    EM
Sbjct: 281 YNAAIDACAKGGRWKEAIDLLREM-PTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREM 339

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD--IVAWNMLVEGYCRM 406
              G++P  ISY + + A A   Q K A  +  EM   P   V   ++ +N  +    + 
Sbjct: 340 PTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREM---PTAGVTQRVIGYNSAIAACAKG 396

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC-EVKKEGV 465
              +EA  ++  M   G +  V +Y S  +             LW + KE   E+   G 
Sbjct: 397 EQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGN-------LWIKAKELLREMATVG- 448

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
                    L P+E   ++  D C R   + +A++++  M   G+ P+   Y        
Sbjct: 449 ---------LAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSY-------- 491

Query: 526 SRMFTSKHASQARQDRRRE 544
               +S  A+ A+ D+ +E
Sbjct: 492 ----SSAIAACAKGDQWKE 506



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/492 (23%), Positives = 208/492 (42%), Gaps = 79/492 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML     P+V  +++ ++  A +G          +++ V  V++ +   +     PD  +
Sbjct: 129 MLARDVTPNVIIYNSAINSCAKAGQ---------WEIAVSLVKEMATVGLA----PDVIS 175

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y++ ++AC   G+ ++ L+LF+ M   G  PDV+TY   I  CA   R    V +L +I 
Sbjct: 176 YSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIP 235

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR-----------DVCK------ 163
            +G+T  + ++ S++ A    G  +IA  +++ M+  R            D C       
Sbjct: 236 TVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWK 295

Query: 164 ----IIREL-------DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP---LLPKTF 209
               ++RE+       D+  YSS  +     D          +I+   E P   L P   
Sbjct: 296 EAIDLLREMPTVGLPPDVVSYSSVIDACSKGDR------WKEAIDILREMPTVGLSPNAI 349

Query: 210 APNSRIYTTLMKGYMNEGR--------VSDTVRMLG-------------------AMRRQ 242
           + NS I      G   E +           T R++G                    +R  
Sbjct: 350 SYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREM 409

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                H    +Y++ + A  K     +A+++L EM  +G+  N + YN  +    +  Q 
Sbjct: 410 PTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQW 469

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A +LLREM     + PDV SY+  I      D    AL    EM A G+AP  I Y +
Sbjct: 470 EEAVDLLREM-PTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNS 528

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
            + A +   + K+A  +  EM R   +  +I++++  ++   R G  +E   ++E M+ +
Sbjct: 529 AIDACSKGGRWKMAVALLGEM-RAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGS 587

Query: 423 GFYPNVATYGSL 434
           G  P+V TY +L
Sbjct: 588 GVVPDVITYHAL 599



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 158/392 (40%), Gaps = 53/392 (13%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V ++S+V++  A  G          + + +  +R+     +     P+   YNA 
Sbjct: 238 GLTPNVISYSSVITACAKEGQ---------WKIALDLLREMKAMRLA----PNIITYNAA 284

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++ACA  G+ K+ + L  +M   G  PDV++Y+ +I  C++  R    + +L  +  +G+
Sbjct: 285 IDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGL 344

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAM---------------------REGRRDVCK 163
           +    ++ S + A    G  + A+ +++ M                      E  ++   
Sbjct: 345 SPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALA 404

Query: 164 IIREL-------DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
           ++RE+        +  YSS  +     +  +  K L   +             APN   Y
Sbjct: 405 LLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVG--------LAPNEVCY 456

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            + +       +  + V +L   R        PD  +Y++ ++A  K      A  VL E
Sbjct: 457 NSAIDACGRGDQWEEAVDLL---REMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKE 513

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M+  G+  + I YN  +    +  +   A  LL EM   A + P+++SY+  ID  +   
Sbjct: 514 MSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEM-RAAGLTPNIISYSSAIDACVRGG 572

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
                +    EMR  G+ P  I+Y  LM   A
Sbjct: 573 QWKEGIALLEEMRGSGVVPDVITYHALMVTCA 604



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 135/313 (43%), Gaps = 29/313 (9%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           + + Y   +      G+    VR+L   R      + PD   Y+ V+ A  K G    A 
Sbjct: 32  DQKSYCMAITACGRGGQWEQAVRLL---REMPTEGAAPDLSAYSAVIDACAKGGQWKMAV 88

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILID 330
             L EM   G+  +  +Y   +    +  +   A +LLREM A D  + P+V+ YN  I+
Sbjct: 89  FFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARD--VTPNVIIYNSAIN 146

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A++   EM   G+AP  ISY++ + A     + + A ++F++M R   V 
Sbjct: 147 SCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDM-RTSGVA 205

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE---A 447
            D++ +   +      G  +EA  ++ ++   G  PNV +Y S+   I+   K G+   A
Sbjct: 206 PDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSV---ITACAKEGQWKIA 262

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           L L +E+K                   L P+    +A  D C +   +++A++++  M  
Sbjct: 263 LDLLREMKAM----------------RLAPNIITYNAAIDACAKGGRWKEAIDLLREMPT 306

Query: 508 HGIPPNKTKYKKI 520
            G+PP+   Y  +
Sbjct: 307 VGLPPDVVSYSSV 319



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 32/50 (64%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105
           P+  +Y++ ++AC   G+ K+ + L ++M   G  PDV+TY+ ++  CA+
Sbjct: 556 PNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCAK 605


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 205/468 (43%), Gaps = 44/468 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD+  Y++ + AC N  + ++ ++L   M   G  PDVLTY+  I  CA+ SR    V 
Sbjct: 183 KPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRWKEAVG 242

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +   G+   +  + + ++A    G  E A  +++ M         +    D+  YS
Sbjct: 243 LLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMP-------AVGLAPDVITYS 295

Query: 175 S--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           +  +        +  F  L+        E P   K    N   Y+ ++      G+  + 
Sbjct: 296 TVIDACAKRGQWEPAFRLLM--------EMPT--KGVVANIITYSIVIGACAKWGQWEEA 345

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V +L   R  ++N   PD +TY++ +SA  K G  + A  +L EM   GV  N I+Y I+
Sbjct: 346 VALL---REMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIV 402

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +    ++ +  +A +LL+EM     + PDV++Y+  ID          AL    EM A G
Sbjct: 403 ISACAKRGRWREAIDLLQEMQAHG-VPPDVINYSAAIDACAQASRWEQALWLLREMPATG 461

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG-LVEE 411
           + P  ISY + + A A + + K+A ++  EM     +  D++ ++ ++   C MG   EE
Sbjct: 462 LTPNVISYNSAIDACAKTGRSKIAVELLREMPAH-GLAPDVITYSAVIAS-CAMGRQWEE 519

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A  +   M+  G  P+V +  +  N  +           W E         E ++   ++
Sbjct: 520 ALDLFREMQRQGITPDVVSCNTAINACAQGG--------WWE---------EALDVLGEM 562

Query: 472 PP-PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           P   L PD        D C +   +++ ++++  M   G+ P+   Y+
Sbjct: 563 PTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYR 610



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 206/483 (42%), Gaps = 39/483 (8%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           + PD   Y++ + ACA + + K+ + L   M   G KP+V+ Y+  I  C +  +    V
Sbjct: 217 TPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAV 276

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L+ +  +G+   + T+ +++ A    G  E A  ++  M    + V   I    +   
Sbjct: 277 DLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPT--KGVVANIITYSIVIG 334

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           +    G  ++   +  ++  N +             AP+   Y++ +     +G+  + V
Sbjct: 335 ACAKWGQWEEAVALLREMQENGV-------------APDVITYSSTISACAKKGQWEEAV 381

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
              G +R        P+ ++Y  V+SA  K G    A  +L EM   GVP + I Y+  +
Sbjct: 382 ---GLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAI 438

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
               Q  + ++A  LLREM     + P+V+SYN  ID       S  A+    EM A G+
Sbjct: 439 DACAQASRWEQALWLLREMPATG-LTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGL 497

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           AP  I+Y+ ++ + A+  Q + A  +F EM R   +  D+V+ N  +    + G  EEA 
Sbjct: 498 APDVITYSAVIASCAMGRQWEEALDLFREMQRQ-GITPDVVSCNTAINACAQGGWWEEAL 556

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK---------------ERC 458
            ++  M   G  P+  +Y +  +  +   +  E + L +E+                  C
Sbjct: 557 DVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSAC 616

Query: 459 EVK---KEGVNADSD-LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
            V    KE +    D L   L PD    ++  + C +   +++A  ++  M   G+ P+ 
Sbjct: 617 SVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDV 676

Query: 515 TKY 517
             +
Sbjct: 677 NSF 679



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/497 (22%), Positives = 202/497 (40%), Gaps = 69/497 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   Y+A ++AC   G+ +  + L  +M   G  PDV+TY+ +I  CA+  +      
Sbjct: 253 KPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFR 312

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +   G+   + T+  ++ A   +G  E A  +++ M+E       I     +   +
Sbjct: 313 LLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACA 372

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            + + ++             ++    E P+  +   PN+  Y  ++      GR  + + 
Sbjct: 373 KKGQWEE-------------AVGLLREMPM--EGVTPNAISYGIVISACAKRGRWREAID 417

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M   + +   PD + Y+  + A  +A   ++A  +L EM   G+  N I+YN  + 
Sbjct: 418 LLQEM---QAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAID 474

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
              +  +   A ELLREM     + PDV++Y+ +I    +      AL  F EM+ +GI 
Sbjct: 475 ACAKTGRSKIAVELLREMPAHG-LAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGIT 533

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM-----LRDP---RVKVDIVA----WNMLVE- 401
           P  +S  T + A A     + A  V  EM     + D    R  +D  A    W  +++ 
Sbjct: 534 PDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDL 593

Query: 402 --------------------GYCRM-GLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                                 C + GL +EA  ++  M   G  P+V TY S  N  + 
Sbjct: 594 LREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAK 653

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             +  EA +L +++                    L PD    +A  D C     +  A+E
Sbjct: 654 GGRWKEATVLLRQMPTF----------------GLAPDVNSFNAAIDACGNGDQWGTAVE 697

Query: 501 IVACMEEHGIPPNKTKY 517
           ++  M   G+ PN+  Y
Sbjct: 698 VLFEMRALGVSPNEATY 714



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 20/289 (6%)

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D  + L  + R ++    PD   Y++ ++A   A   +RA ++LA M   G P + +TY
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTY 224

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           +  +    +  +  +A  LLR M     ++P+V+ Y+  I           A+    EM 
Sbjct: 225 SSAIAACAKVSRWKEAVGLLRSMKGQG-VKPNVIVYSAAISACRKGGQWETAVDLLKEMP 283

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           A G+AP  I+Y+T++ A A   Q + A ++  EM     V  +I+ +++++    + G  
Sbjct: 284 AVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTK-GVVANIITYSIVIGACAKWGQW 342

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKKEGVNAD 468
           EEA  ++  M+ENG  P+V TY S    IS   K G+    W+E +    E+  EGV   
Sbjct: 343 EEAVALLREMQENGVAPDVITYSST---ISACAKKGQ----WEEAVGLLREMPMEGVT-- 393

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                   P+      +   C +   +R+A++++  M+ HG+PP+   Y
Sbjct: 394 --------PNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINY 434



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 174/433 (40%), Gaps = 72/433 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P V  +S+ +S  A  G          ++  V  +R+     +     P+  +
Sbjct: 352 MQENGVAPDVITYSSTISACAKKGQ---------WEEAVGLLREMPMEGVT----PNAIS 398

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  V++ACA  G+ ++ + L  +M   G  PDV+ Y+  I  CA+ASR    +++L  + 
Sbjct: 399 YGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMP 458

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+T  + ++ S + A    G  +IA   V+ +RE                        
Sbjct: 459 ATGLTPNVISYNSAIDACAKTGRSKIA---VELLRE------------------------ 491

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                  +     AP+   Y+ ++       +  + + +   M+
Sbjct: 492 -----------------------MPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQ 528

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           RQ      PD V+  T ++A  + G  + A  VL EM  +G+  + I+Y   +    +  
Sbjct: 529 RQ---GITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGD 585

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +  +  +LLREM+    + PD +SY   +    +      AL    +M A G++P  ++Y
Sbjct: 586 RWKEIIDLLREMS-TVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTY 644

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIER 418
            + + A A   + K A  +  +M   P   +  D+ ++N  ++          A  ++  
Sbjct: 645 NSAINACAKGGRWKEATVLLRQM---PTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFE 701

Query: 419 MKENGFYPNVATY 431
           M+  G  PN ATY
Sbjct: 702 MRALGVSPNEATY 714



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 141/310 (45%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y++ +       R  + V +L +M+ Q      P+ + Y+  +SA  K G  + A
Sbjct: 219 PDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQ---GVKPNVIVYSAAISACRKGGQWETA 275

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L EM  +G+  + ITY+ ++    ++ Q + A  LL EM     +  ++++Y+I+I 
Sbjct: 276 VDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVA-NIITYSIVIG 334

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A+    EM+  G+AP  I+Y++ + A A   Q + A  +  EM  +  V 
Sbjct: 335 ACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPME-GVT 393

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            + +++ +++    + G   EA  +++ M+ +G  P+V  Y +  +  + A +  +AL L
Sbjct: 394 PNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWL 453

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            +E+                    L P+    ++  D C +    + A+E++  M  HG+
Sbjct: 454 LREMPAT----------------GLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGL 497

Query: 511 PPNKTKYKKI 520
            P+   Y  +
Sbjct: 498 APDVITYSAV 507



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN+ +NACA  G+ K+   L  QM  FG  PDV ++N  I  C    +    V V
Sbjct: 639 PDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEV 698

Query: 116 LERILEMGITLCMTTFQSLVAAYV 139
           L  +  +G++    T+  L A Y 
Sbjct: 699 LFEMRALGVSPNEATY--LTAMYA 720


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 124/560 (22%), Positives = 234/560 (41%), Gaps = 99/560 (17%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           R G +P V A++ +++ L   G  G VE ++++ +             +  D+ P+  +Y
Sbjct: 370 RKGCIPSVIAYNCILTCL---GRKGKVEEALRILEA------------MKMDAAPNLTSY 414

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N +++     G+ +  L++ D M E G  P+++T N+MI    +A R      +   +  
Sbjct: 415 NILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDH 474

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
              T    TF SL+    G G                                    G  
Sbjct: 475 KVCTPDSVTFCSLID---GLG----------------------------------RHGKV 497

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           +D   ++EK+L +                PN+ +YT+L++ +   GR  D  ++   M  
Sbjct: 498 NDAYMLYEKMLDSGQT-------------PNAVVYTSLIRNFFKCGRKEDGHKIYKEMMH 544

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +      PD +     +  + KAG +++ R +  E+   G+  +  +Y+IL+ G  +   
Sbjct: 545 R---GCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGF 601

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
                +L  EM +   +  D  +YNI+IDGF        A     EM+ +G+ PT ++Y 
Sbjct: 602 SKDTYKLFYEMKEQG-LHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYG 660

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +++   A   +   A  +F+E  +   V +++V ++ L++G+ ++G ++EA  I+E + +
Sbjct: 661 SVIDGLAKIDRLDEAYMLFEEA-KSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQ 719

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  PN  T+  L + +  A +  EAL+ ++ +K              +L  P  P+E  
Sbjct: 720 KGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMK--------------NLKCP--PNEVT 763

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDR 541
              + +   +   F KA      M++ G+ PN   Y            T+  +  AR   
Sbjct: 764 YSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITY------------TTMISGLARVGN 811

Query: 542 RRERKRAAEAFKFWLGLPNS 561
             E K   E FK   G+P+S
Sbjct: 812 VLEAKDLFERFKSSGGIPDS 831



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 142/305 (46%), Gaps = 22/305 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P++     ++  ++   ++ +   ++  MR+ +     P +  YTT++ AL  A   D
Sbjct: 163 FGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFK---FRPAYSAYTTLIGALSAAHEAD 219

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
               +L +M  IG       +  L+  + ++ ++D A  LL EM  ++    D+V YN+ 
Sbjct: 220 PMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNS-FNADLVLYNVC 278

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ID F  +     A  FF+E++++G+ P  +++T+++     + +   A ++F+E+  +  
Sbjct: 279 IDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKS 338

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V   + A+N ++ GY  +G   EA  ++ER K  G  P+V  Y  +   +    K  EAL
Sbjct: 339 VPC-VYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEAL 397

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            + + +K              D  P L     L+D L     +A     AL++   M+E 
Sbjct: 398 RILEAMK-------------MDAAPNLTSYNILIDMLC----KAGELEAALKVQDSMKEA 440

Query: 509 GIPPN 513
           G+ PN
Sbjct: 441 GLFPN 445



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 118/238 (49%), Gaps = 6/238 (2%)

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
            ++TTL+  +  EGRV   + +L  M+    NA   D V Y   +    K G +D A + 
Sbjct: 238 HLFTTLICVFAREGRVDAALSLLDEMKSNSFNA---DLVLYNVCIDCFGKVGKVDMAWKF 294

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             E+   G+  + +T+  ++   C+  ++D+A EL  E+ D  K  P V +YN +I G+ 
Sbjct: 295 FHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEEL-DSNKSVPCVYAYNTMIMGYG 353

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            +     A +     + +G  P+ I+Y  ++       + + A ++ + M  D     ++
Sbjct: 354 SVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA--APNL 411

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            ++N+L++  C+ G +E A ++ + MKE G +PN+ T   + + +  A++  EA  ++
Sbjct: 412 TSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIF 469



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 103/520 (19%), Positives = 213/520 (40%), Gaps = 50/520 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M +  + P   A++T++  L+A+ +  P+ ++      ++++++      V         
Sbjct: 193 MRKFKFRPAYSAYTTLIGALSAAHEADPMLTL------LRQMQEIGYEVTVH-------L 239

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  ++   A  G+    L L D+M       D++ YNV I    +  +  +       + 
Sbjct: 240 FTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELK 299

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     TF S++        ++ A  + + +   +   C       +  Y S   G 
Sbjct: 300 SQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGS--VGK 357

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            ++   + E+              +P   A N  I T L +    +G+V + +R+L AM+
Sbjct: 358 FNEAYSLLER--------QKRKGCIPSVIAYNC-ILTCLGR----KGKVEEALRILEAMK 404

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                 + P+  +Y  ++  L KAG ++ A +V   M   G+  N IT NI++   C+  
Sbjct: 405 MD----AAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQ 460

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+A  +   + D     PD V++  LIDG         A   + +M   G  P  + Y
Sbjct: 461 RLDEACSIFLGL-DHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVY 519

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T+L++ F    + +  +K++ EM+       D++  N  ++   + G +E+ + + E +K
Sbjct: 520 TSLIRNFFKCGRKEDGHKIYKEMMHRG-CSPDLMLLNNYMDCVFKAGEIEKGRALFEEIK 578

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  P+V +Y  L +G+       +   L+ E+KE+                 L  D  
Sbjct: 579 AQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQ----------------GLHLDTR 622

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             + + D   ++    KA +++  M+  G+ P    Y  +
Sbjct: 623 AYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSV 662



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 143/384 (37%), Gaps = 70/384 (18%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V+++S ++  L   G     ++ KLF  + ++               DT AYN V
Sbjct: 581 GLTPDVRSYSILIHGLVKGGFSK--DTYKLFYEMKEQGLHL-----------DTRAYNIV 627

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K  QL ++M   G +P V+TY  +I   A+  R      + E      +
Sbjct: 628 IDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAV 687

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            L +  + SL+    GFG +            GR D   +I E                 
Sbjct: 688 DLNVVVYSSLID---GFGKV------------GRIDEAYLILE----------------- 715

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              L+ K   PN+  +  L+   +    + + +     M+  + 
Sbjct: 716 ------------------ELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLK- 756

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+ VTY+ +V+ L K    ++A     EM + G+  N ITY  ++ G  +   + +
Sbjct: 757 --CPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLE 814

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           AK+L         I PD   YN +I+G    + +  A   F E R +G      +   L+
Sbjct: 815 AKDLFERFKSSGGI-PDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLL 873

Query: 365 KAFALS---SQPKLANKVFDEMLR 385
            A   +    Q  +   V  EM +
Sbjct: 874 DALHKADCLEQAAIVGAVLREMAK 897


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 185/438 (42%), Gaps = 58/438 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P T  +N V+    N    K  + LF +M + G  PD  TYN++I  LC R   +  L  
Sbjct: 350 PSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREAL-N 407

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + E++ E G+   + T+ SL+  Y   G ++ A  +   M  G+     ++    L    
Sbjct: 408 LWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEM-PGKGFTPNVVTYTTLMK-G 465

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             N+   D    +  ++  N +             + N   Y TL+ G    GRV +   
Sbjct: 466 HINKAAFDKAYALLAEMKQNGV-------------SCNDYTYNTLINGLCVVGRVCEVGE 512

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ML   +R E     P  +TY ++++  +KAG M  A  V  +M   G+P N +TY   + 
Sbjct: 513 ML---KRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFID 569

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF--------------ILIDDS-- 338
           GYC+    D A ++L ++     + PD+ +YN LI GF              +++ D   
Sbjct: 570 GYCKTSCCDLALKMLNDVRCKG-LRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLL 628

Query: 339 -------------------AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
                                AL F+ +M   GI     +YTTL+  F+       A K+
Sbjct: 629 PNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKL 688

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           + EM+    +  D + +  L  G CR G +++A+++++ M      PNV  Y  L NG  
Sbjct: 689 YSEMVAKGNIP-DHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYL 747

Query: 440 LARKPGEALLLWKEIKER 457
              K  EA  L  E+ ER
Sbjct: 748 RNGKLQEAFRLHDEMLER 765



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 202/451 (44%), Gaps = 42/451 (9%)

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV-LTYNVMI 100
           +RK  D   V    P    +N+V++     G+ ++ L + D++   G K  V L   +M 
Sbjct: 235 LRKMQDAGFV----PWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMH 290

Query: 101 KLC-ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
             C  R  RK L +F  E  L  G+     T+  L+      G  E A  + + MR+   
Sbjct: 291 GYCLQREVRKALDIF--EETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRD--H 346

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI---- 215
            +     E ++      N+    D   +F+++  + I  +    +L        +I    
Sbjct: 347 GLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREAL 406

Query: 216 -----------------YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                            Y +L+  Y   G + + V++   M         P+ VTYTT++
Sbjct: 407 NLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEM---PGKGFTPNVVTYTTLM 463

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
              +   + D+A  +LAEM + GV  N  TYN L+ G C   ++ +  E+L+    +  +
Sbjct: 464 KGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFV 523

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            P  ++YN +I+GFI       A   + +M A+GI P  ++YT+ +  +  +S   LA K
Sbjct: 524 -PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALK 582

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           + ++ +R   ++ DI A+N L+ G+C+ G +  A +++  M ++G  PN++ Y S   G 
Sbjct: 583 MLND-VRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGY 641

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADS 469
              +   EAL  ++++       KEG++ D+
Sbjct: 642 KNLKMMEEALRFYEKM------IKEGIDLDT 666



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 198/464 (42%), Gaps = 53/464 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G LP    ++ V+  L            KL+   V   ++ +D  I     PD   YN +
Sbjct: 347 GLLPSTNEFNMVIKGLLND---------KLWKDAVSLFKEMADSGI-----PDAFTYNIL 392

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLVFVLERILEMG 123
           ++      K ++ L L+++M+E G KP ++TY+ +++  C        +    E +   G
Sbjct: 393 IHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTE-MPGKG 451

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIRELDLE 171
            T  + T+ +L+  ++     + A  ++  M++                +C + R  ++ 
Sbjct: 452 FTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVG 511

Query: 172 DYSS--ENEGDDDDDDEVFEKLLPNSI-NPSSEPPLLPKTFA-----------PNSRIYT 217
           +     E EG       V   +  NSI N   +  ++   FA           PN   YT
Sbjct: 512 EMLKRFETEG------FVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYT 565

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           + + GY         ++ML  +R +      PD   Y +++    + G+M  A QVL  M
Sbjct: 566 SFIDGYCKTSCCDLALKMLNDVRCK---GLRPDIAAYNSLIYGFCQEGNMSHALQVLVLM 622

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            + G+  N   YN  + GY     +++A     +M  +  I+ D  +Y  LIDGF    +
Sbjct: 623 LKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEG-IDLDTATYTTLIDGFSKDGN 681

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              AL  ++EM A+G  P  I++T L      +     A K+ DEM R   ++ +++ +N
Sbjct: 682 VTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNR-LDIRPNVLMYN 740

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           ML+ GY R G ++EA R+ + M E    P+  TY  L    SL 
Sbjct: 741 MLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKSLG 784



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 172/398 (43%), Gaps = 21/398 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   ++ V+ AC   G     ++LFD+M     +PD    +V I    +    +  + VL
Sbjct: 176 DAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVL 235

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            ++ + G      TF S+V   V  G +E A  I   +    + +  ++    +  Y  +
Sbjct: 236 RKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQ 295

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            E     D  +FE+ L + +              P    YT L++G   EG       + 
Sbjct: 296 REVRKALD--IFEETLRDGL-------------VPTDVTYTVLIRGCTEEGMPEKAYELC 340

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             MR   D+   P    +  V+  L+       A  +  EM   G+P +  TYNIL+   
Sbjct: 341 RQMR---DHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWL 396

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQ+ +I +A  L  +M ++  ++P +V+Y+ L+  + +      A+  + EM  +G  P 
Sbjct: 397 CQRRKIREALNLWEKM-NETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPN 455

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++YTTLMK     +    A  +  EM +   V  +   +N L+ G C +G V E   ++
Sbjct: 456 VVTYTTLMKGHINKAAFDKAYALLAEM-KQNGVSCNDYTYNTLINGLCVVGRVCEVGEML 514

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +R +  GF P   TY S+ NG   A   G A  +++++
Sbjct: 515 KRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 29/317 (9%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN ++N    +G+  +  ++  +    G  P  +TYN +I    +A        V +++
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE--- 176
              GI   + T+ S +  Y      ++A  ++  +R      CK +R  D+  Y+S    
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVR------CKGLRP-DIAAYNSLIYG 605

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG+     +V   +L + +              PN  +Y + + GY N   + + +R
Sbjct: 606 FCQEGNMSHALQVLVLMLKDGL-------------LPNISVYNSFITGYKNLKMMEEALR 652

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               M ++  +    D  TYTT++    K G++  A ++ +EM   G   + IT+  L  
Sbjct: 653 FYEKMIKEGIDL---DTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTH 709

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+   ID A++LL EM +   I P+V+ YN+LI+G++       A    +EM  R I 
Sbjct: 710 GLCRNGDIDDARKLLDEM-NRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIM 768

Query: 355 PTKISYTTLMKAFALSS 371
           P   +Y  L+   +L S
Sbjct: 769 PDDTTYDILVGMKSLGS 785



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 143/343 (41%), Gaps = 35/343 (10%)

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           EG  DD   +F+++      P+SE         P+ R+ +  +       ++ D  R L 
Sbjct: 190 EGMYDDAVRLFDEM------PASE-------IEPDQRVCSVAIASLC---KLRDANRALL 233

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            +R+ +D    P   T+ +VV  LVK G M+ A  +  E+   G   + +    L+ GYC
Sbjct: 234 VLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYC 293

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
            Q ++ KA ++  E   D  +  D V+Y +LI G         A     +MR  G+ P+ 
Sbjct: 294 LQREVRKALDIFEETLRDGLVPTD-VTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPST 352

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             +  ++K        K A  +F EM  D  +  D   +N+L+   C+   + EA  + E
Sbjct: 353 NEFNMVIKGLLNDKLWKDAVSLFKEM-ADSGIP-DAFTYNILIHWLCQRRKIREALNLWE 410

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           +M E G  P + TY SL     +     EA+ L+ E+  +                   P
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGK----------------GFTP 454

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +      L    +  A F KA  ++A M+++G+  N   Y  +
Sbjct: 455 NVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTL 497



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 133/284 (46%), Gaps = 21/284 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN+++N     G       ++ QM   G  P+++TY   I    + S   L + +
Sbjct: 524 PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKM 583

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYS 174
           L  +   G+   +  + SL+  +   G++  A + +V  +++G      +     +  Y 
Sbjct: 584 LNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSF-ITGY- 641

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N    ++    +EK++   I+              ++  YTTL+ G+  +G V+  ++
Sbjct: 642 -KNLKMMEEALRFYEKMIKEGIDL-------------DTATYTTLIDGFSKDGNVTFALK 687

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +    + PDH+T+T +   L + G +D AR++L EM R+ +  N + YN+L+ 
Sbjct: 688 LYSEMVAK---GNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLIN 744

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           GY +  ++ +A  L  EM  + KI PD  +Y+IL+    L  DS
Sbjct: 745 GYLRNGKLQEAFRLHDEML-ERKIMPDDTTYDILVGMKSLGSDS 787



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 70/333 (21%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  + T +++   ++ S   A  +LAEM   G P +   ++++++   ++   D A  L
Sbjct: 140 PDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEGMYDDAVRL 199

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY-------- 360
             EM   ++IEPD    ++ I     + D+  AL    +M+  G  P   ++        
Sbjct: 200 FDEMP-ASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLV 258

Query: 361 ---------------------------TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                                      TTLM  + L  + + A  +F+E LRD  V  D 
Sbjct: 259 KGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTD- 317

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V + +L+ G    G+ E+A  +  +M+++G  P+   +  +  G+   +   +A+ L+KE
Sbjct: 318 VTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKE 377

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +            ADS +     PD    + L     +    R+AL +   M E G+ P 
Sbjct: 378 M------------ADSGI-----PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPY 420

Query: 514 KTKYK----------------KIYVEMHSRMFT 530
              Y                 K+Y EM  + FT
Sbjct: 421 IVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFT 453


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 190/413 (46%), Gaps = 39/413 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           PD  +YNA+++  +   +     Q+FD+M   G  PDV+TYN+MI  LC+R  +  L   
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRG-KLELAFE 187

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREGRRDVCKIIRELD 169
           V++ +L+ G    + T+  L+ A +  G +  A     E + + +R        IIR + 
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                   EG +D   +    L     NP                 Y  L++ ++N+ R 
Sbjct: 248 -------KEGMEDRALDFVRHLSARGCNPDVVS-------------YNILLRSFLNKSRW 287

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D  R+   M+    +   P+ VT++ ++S+  + G +  A  VL  M   G+  +  +Y
Sbjct: 288 EDGERL---MKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSY 344

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           + L+  +C++ ++D A E L +M  D  + PD+V+YN ++        +  AL  F ++ 
Sbjct: 345 DPLISAFCKEGRLDLAIEYLEKMVSDGCL-PDIVNYNTILATLCKFGCADLALDVFEKLD 403

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRM 406
             G  PT  +Y T+  A         A ++  EM+R   DP    D + +N L+   CR 
Sbjct: 404 EVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDP----DEITYNSLISCLCRD 459

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERC 458
           GLV+EA  ++  M+   F P V ++  +  G+  A +  E + LL   +++ C
Sbjct: 460 GLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGC 512



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 101/463 (21%), Positives = 200/463 (43%), Gaps = 41/463 (8%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK--LCARASRKHLLVFVLERILE 121
           +LN     GK  + L   + +   G KPDV+    +IK    +R  +K + V     ILE
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM---EILE 124

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
                 + ++ ++++ +     ++ A  +   MR   R     +   ++   S  + G  
Sbjct: 125 TYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRS--RGFSPDVVTYNIMIGSLCSRGKL 182

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           +   EV ++LL +   PS                YT L++  + EGR+++ + +   +  
Sbjct: 183 ELAFEVMDELLKDGCKPS-------------VITYTILIEATILEGRINEALELFDELVS 229

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +      PD  TY  ++  + K G  DRA   +  ++  G   + ++YNILL+ +  + +
Sbjct: 230 R---GLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSR 286

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
            +  + L+++M      EP+VV+++ILI  F        A+     M+ +G+ P   SY 
Sbjct: 287 WEDGERLMKDMVLSG-CEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYD 345

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+ AF    +  LA +  ++M+ D  +  DIV +N ++   C+ G  + A  + E++ E
Sbjct: 346 PLISAFCKEGRLDLAIEYLEKMVSDGCLP-DIVNYNTILATLCKFGCADLALDVFEKLDE 404

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  P V  Y ++ + +       +AL +  E+       ++G++          PDE  
Sbjct: 405 VGCPPTVRAYNTMFSALWSCGNKIKALEMISEM------IRKGID----------PDEIT 448

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            ++L     R     +A+ ++  ME     P    +  + + M
Sbjct: 449 YNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGM 491



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/452 (22%), Positives = 183/452 (40%), Gaps = 72/452 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKL-FDVVVKRVRKFSDPDIVSDSKPDTA 59
           M   G+ P V  ++ ++  L + G       ++L F+V+        D  +    KP   
Sbjct: 157 MRSRGFSPDVVTYNIMIGSLCSRG------KLELAFEVM--------DELLKDGCKPSVI 202

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLER 118
            Y  ++ A    G+  + L+LFD++   G +PD+ TYN +I+ +C        L FV   
Sbjct: 203 TYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFV-RH 261

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +   G    + ++  L+ +++     E  E +++                          
Sbjct: 262 LSARGCNPDVVSYNILLRSFLNKSRWEDGERLMK-------------------------- 295

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                 D V     PN +                   ++ L+  +  EGRV + V +L  
Sbjct: 296 ------DMVLSGCEPNVVT------------------HSILISSFCREGRVREAVNVLEV 331

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M+ +      PD  +Y  ++SA  K G +D A + L +M   G   + + YN +L   C+
Sbjct: 332 MKEK---GLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCK 388

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
               D A ++  ++ D+    P V +YN +        +   AL   +EM  +GI P +I
Sbjct: 389 FGCADLALDVFEKL-DEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEI 447

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y +L+           A  +  +M    R +  ++++N+++ G C+   V E   ++  
Sbjct: 448 TYNSLISCLCRDGLVDEAIGLLVDM-EATRFQPTVISFNIVLLGMCKAHRVFEGIELLIT 506

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLL 450
           M E G  PN  +Y  L  GI+ A    EA+ L
Sbjct: 507 MVEKGCLPNETSYVLLIEGIAYAGWRAEAMEL 538


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 198/449 (44%), Gaps = 65/449 (14%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V+  RK  D    +   P+   YN +++     G  K+  ++F+++   G  P + TY  
Sbjct: 221 VEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGA 280

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I    +A +  ++  +L  +  MG+ + +  F S++ A   +G ++ A  +++ M E  
Sbjct: 281 LIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTE-- 338

Query: 159 RDVCKIIRELDLEDYS-----SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
                +  E D+  Y+     S + G   + +E  E+        + E  LLP  F+   
Sbjct: 339 -----MGCEPDITTYNILINFSCSGGRIKEAEEFLER--------AKERTLLPNKFS--- 382

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YT LM  Y  +G   D V     + +  +    PD V+Y   +   V  G +D A  V
Sbjct: 383 --YTPLMHAYCKQG---DYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMV 437

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             +M   GV  +   YN+L+ G C++ +   AK LL EM  D  ++PD   Y  L+DGFI
Sbjct: 438 REKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEML-DLNLQPDAYMYATLVDGFI 496

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMK----------AFALSSQPKLAN------ 377
             ++   A   F  + ++GI P  + Y  ++K          A +  ++ K+AN      
Sbjct: 497 RNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEY 556

Query: 378 -------------------KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
                              K+F +M++  + K ++VA+  L+ G+C++  +  A+++   
Sbjct: 557 THSTVIDGYVKQHDLDSALKMFGQMMKQ-KYKPNVVAYTSLINGFCKIADMSRAEKVFRA 615

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEA 447
           M+     PNV TY  L  G S   KP +A
Sbjct: 616 MQSFNLEPNVVTYTILIGGFSKTGKPEKA 644



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 116/518 (22%), Positives = 210/518 (40%), Gaps = 91/518 (17%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+LP ++ +  ++     +G          F VV + + + +    V     +   +N++
Sbjct: 270 GFLPTLETYGALIDGFCKAGK---------FQVVDQLLNEMN----VMGLNVNVKVFNSI 316

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++A    G   K  ++   M E G +PD+ TYN++I       R       LER  E  +
Sbjct: 317 IDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTL 376

Query: 125 TLCMTTFQSLVAAYVGFGD--------LEIAET------------IVQAMREGRRDVCKI 164
                ++  L+ AY   GD         +IAET            I  ++  G  DV  +
Sbjct: 377 LPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALM 436

Query: 165 IREL--------DLEDYSSENEG--------------------DDDDDDEVFEKLL---- 192
           +RE         D + Y+    G                    +   D  ++  L+    
Sbjct: 437 VREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFI 496

Query: 193 -PNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH- 248
             N ++ ++E    ++ K   P    Y  ++KG    G+++D V  +  M+     A+H 
Sbjct: 497 RNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKI----ANHA 552

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  T++TV+   VK   +D A ++  +M +     N + Y  L+ G+C+   + +A+++
Sbjct: 553 PDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKV 612

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP------------T 356
            R M     +EP+VV+Y ILI GF        A +FF  M      P            T
Sbjct: 613 FRAM-QSFNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLT 671

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            I+ TTL+      +   L    F  M+ +   +V I  +N ++   C+ G+V+ A+ + 
Sbjct: 672 NITNTTLLIEKNEENDRSLILDFFATMISEGWSQV-IATYNSIIVCLCKHGMVDTAQLLQ 730

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +M   GF  +   + +L +G+    K  E    W+ I
Sbjct: 731 TKMLRKGFLMDSVCFSALLHGLCQTGKSKE----WRNI 764



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 132/312 (42%), Gaps = 29/312 (9%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN   Y  ++ GY  +G +    R+   ++ +      P   TY  ++    KAG    
Sbjct: 237 VPNVVFYNVIIDGYCKKGDLKRATRVFEELKLK---GFLPTLETYGALIDGFCKAGKFQV 293

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             Q+L EM  +G+  N   +N ++    +   +DKA E++R M +    EPD+ +YNILI
Sbjct: 294 VDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTE-MGCEPDITTYNILI 352

Query: 330 DGFILIDDSAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           +       S G    A  F    + R + P K SYT LM A+       +A+ +  + + 
Sbjct: 353 N----FSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFK-IA 407

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           +   K D+V++   + G    G ++ A  + E+M E G +P+   Y  L +G+    +  
Sbjct: 408 ETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFP 467

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
            A LL  E+                L   L+PD  +   L D  +R     KA E+   +
Sbjct: 468 AAKLLLSEM----------------LDLNLQPDAYMYATLVDGFIRNNELDKATELFEVV 511

Query: 506 EEHGIPPNKTKY 517
              GI P    Y
Sbjct: 512 MSKGIDPGVVGY 523



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 124/257 (48%), Gaps = 10/257 (3%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + F P      +++  Y   G V   V+M   +   E     P  V   ++++ LVK G 
Sbjct: 122 RNFKPTLEALNSVICVYAEYGFVDKAVKMFYMV--CELYNCFPCVVANNSLLNCLVKNGK 179

Query: 267 MDRARQVLAEMTRIG------VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           +D A ++  +M   G      +  +  +  I++KG C   ++++ ++L+ +   +  + P
Sbjct: 180 VDVACELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKVEEGRKLIDDRWGNGCV-P 238

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           +VV YN++IDG+    D   A   F E++ +G  PT  +Y  L+  F  + + ++ +++ 
Sbjct: 239 NVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLL 298

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +EM     + V++  +N +++   + GLV++A  ++  M E G  P++ TY  L N    
Sbjct: 299 NEM-NVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCS 357

Query: 441 ARKPGEALLLWKEIKER 457
             +  EA    +  KER
Sbjct: 358 GGRIKEAEEFLERAKER 374



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 117/535 (21%), Positives = 203/535 (37%), Gaps = 98/535 (18%)

Query: 41  RVRKFSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHE-FGAKPDV 93
           + R FS+ +IV +       KP   A N+V+   A  G   K +++F  + E +   P V
Sbjct: 105 KYRLFSEIEIVLEDMKNRNFKPTLEALNSVICVYAEYGFVDKAVKMFYMVCELYNCFPCV 164

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILE----MGITLCMTTFQSLVAAYVGFGDLEIAET 149
           +  N ++    +  +  +   + +++LE     G+ L +  + S+V    G  D      
Sbjct: 165 VANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDLVVDNY-SIVIVVKGLCD------ 217

Query: 150 IVQAMREGRRDV-------CK---IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
            V  + EGR+ +       C    +   + ++ Y  +  GD      VFE+L        
Sbjct: 218 -VGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKK--GDLKRATRVFEELKL------ 268

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                  K F P    Y  L+ G+   G+     ++L  M     N +      + +++ 
Sbjct: 269 -------KGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVK---VFNSIID 318

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE-------- 311
           A  K G +D+A +++  MT +G   +  TYNIL+   C   +I +A+E L          
Sbjct: 319 AKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLP 378

Query: 312 -------------------MADDA--KI-----EPDVVSYNILIDGFILIDDSAGALTFF 345
                              MA D   KI     +PD+VSY   I G +   +   AL   
Sbjct: 379 NKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVR 438

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            +M  +G+ P    Y  LM       +   A  +  EML D  ++ D   +  LV+G+ R
Sbjct: 439 EKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEML-DLNLQPDAYMYATLVDGFIR 497

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
              +++A  + E +   G  P V  Y  +  G+    K  +A+    ++K          
Sbjct: 498 NNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMK---------- 547

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                      PDE     + D  V+      AL++   M +    PN   Y  +
Sbjct: 548 ------IANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSL 596



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 120/278 (43%), Gaps = 23/278 (8%)

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
           +S  ++V Y++++  +VK         VL +M            N ++  Y +   +DKA
Sbjct: 88  SSPLNNVAYSSLLKLMVKYRLFSEIEIVLEDMKNRNFKPTLEALNSVICVYAEYGFVDKA 147

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG------IAPTKIS 359
            ++   + +     P VV+ N L++  +       A   +++M  RG      +     S
Sbjct: 148 VKMFYMVCELYNCFPCVVANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDLVVDNYS 207

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
              ++K      + +   K+ D+   +  V  ++V +N++++GYC+ G ++ A R+ E +
Sbjct: 208 IVIVVKGLCDVGKVEEGRKLIDDRWGNGCVP-NVVFYNVIIDGYCKKGDLKRATRVFEEL 266

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           K  GF P + TYG+L +G   A K      L  E+         G+N +           
Sbjct: 267 KLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVM------GLNVNV---------- 310

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           ++ +++ D   +     KA E++  M E G  P+ T Y
Sbjct: 311 KVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTY 348


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 169/403 (41%), Gaps = 55/403 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K D  ++  ++  C   G   K  QL   + + G  P+V+ Y  +I  C +         
Sbjct: 159 KFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARL 218

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             +++ EMG+     TF  L+                                       
Sbjct: 219 FFDKMGEMGLVANQYTFTVLINGLF----------------------------------- 243

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G   D  ++FEK+  N +              PN   Y  LM  Y  EG++     
Sbjct: 244 --KKGLKKDGFDLFEKMKINGL-------------FPNLYTYNCLMNEYCGEGKICRAFD 288

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   MR +   A   + VTY T++  + +   +  A +++ +M +  V  N ITYN L+ 
Sbjct: 289 LFDEMRERGVEA---NVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIG 345

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C    +DKA  LL ++  +  + P +V+YNILI+G+    +  G      EM  RGI+
Sbjct: 346 GFCDVGNLDKASSLLDQLKSNG-LSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGIS 404

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P+K++ T L+ A+    + + A +++  M +   V  D+  + +L+ G C  G ++E+ +
Sbjct: 405 PSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVP-DVYVYGVLIHGLCMKGNMKESSK 463

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +   M E    P+   Y ++ +G         AL L +E++ +
Sbjct: 464 LFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAK 506



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 166/402 (41%), Gaps = 76/402 (18%)

Query: 5   GYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVV----KRVRKFSD 47
           G  P+V  ++T++     +GD              G V +   F V++    K+  K   
Sbjct: 192 GLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDG 251

Query: 48  PDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
            D+    K     P+   YN ++N     GK  +   LFD+M E G + +V+TYN +I  
Sbjct: 252 FDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGG 311

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
             R  R      +++++ +  ++  + T+ +L+  +   G+L+ A +++           
Sbjct: 312 MCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLL----------- 360

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
                                     ++L  N ++PS                Y  L++G
Sbjct: 361 --------------------------DQLKSNGLSPSLVT-------------YNILIEG 381

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           Y   G       +    R  E     P  VT T ++ A V+   M++A Q+ + M + G+
Sbjct: 382 YSKAGNWKGVADL---AREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGL 438

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             +   Y +L+ G C +  + ++ +L R M +   +EP  V YN +I G+   D+S  AL
Sbjct: 439 VPDVYVYGVLIHGLCMKGNMKESSKLFRSMGE-MHVEPSDVIYNTMIHGYCKEDNSYRAL 497

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
               EM A+G+ P   SY++++       + + A  + D+M+
Sbjct: 498 RLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMI 539



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 143/364 (39%), Gaps = 90/364 (24%)

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG-------------------- 281
           Q  N S    + Y ++++A +K+  +D+A     EM   G                    
Sbjct: 84  QNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNC 143

Query: 282 --------------VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
                         V  +  ++ I++KG C+   +DK+ +LL  +  D  + P+VV Y  
Sbjct: 144 FEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLG-LLQDMGLSPNVVIYTT 202

Query: 328 LIDGFI---------LIDDSAGAL-------TF-------------------FNEMRARG 352
           LIDG           L  D  G +       TF                   F +M+  G
Sbjct: 203 LIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKING 262

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P   +Y  LM  +    +   A  +FDEM R+  V+ ++V +N L+ G CR   V EA
Sbjct: 263 LFPNLYTYNCLMNEYCGEGKICRAFDLFDEM-RERGVEANVVTYNTLIGGMCREERVWEA 321

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC--------EVKKEG 464
           ++++++MK+    PN+ TY +L  G        +A  L  ++K            +  EG
Sbjct: 322 EKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEG 381

Query: 465 VN------ADSDLPPPLK-----PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            +        +DL   ++     P +     L D  VR     KA +I + ME+ G+ P+
Sbjct: 382 YSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPD 441

Query: 514 KTKY 517
              Y
Sbjct: 442 VYVY 445


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 123/533 (23%), Positives = 214/533 (40%), Gaps = 60/533 (11%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
             PD  A+  V+N      +  +   + ++    G +PD +TYNV I    +A R     
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L+++ E        T+ +LV   +  G L+ A  +++ M E           + ++  
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSS-----------------EPPLLPK--------- 207
           S    G  ++   +F  +L N   P +                 E   L K         
Sbjct: 123 S--KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHA 180

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH----PDHVTYTTVVSALVK 263
           T  P+   YT+L+ G    GR+      L A +  +D A      PD VTYT+++  L K
Sbjct: 181 TAVPDVVTYTSLIDGLCKAGRI------LEARQVFDDEAVERGFIPDAVTYTSIIDGLCK 234

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G ++   +   EM   G   + +TY  L+ G+ +   I KA  + R+M     +    V
Sbjct: 235 LGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTV-VSTV 293

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YNI++DG       A A   F  M  RG   T ++Y+ LM  F        A ++F  M
Sbjct: 294 TYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRM 353

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           L D   + ++V++N+++ G CR G + +A    E++ +    P+V T+ +  +G+     
Sbjct: 354 L-DRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLC---- 408

Query: 444 PGEALLLWKEIKERCEVKKEGVNA-DSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
                       +R +   +GV   +S +     P+      L D   RA     ALEI 
Sbjct: 409 ------------QRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIF 456

Query: 503 ACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFW 555
             M   G+ P+   +  +   +       +        R  ER+ A +A+ +W
Sbjct: 457 REMVSRGVAPDVVVFNTL---IRWLCIAGRVDEALEVFRELERRSAPDAWSYW 506



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 176/427 (41%), Gaps = 81/427 (18%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           +P V  +++++  L  +G    +E+ ++FD          D  +     PD   Y ++++
Sbjct: 183 VPDVVTYTSLIDGLCKAGR--ILEARQVFD----------DEAVERGFIPDAVTYTSIID 230

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI------KLCARASRKHLLVFVLERIL 120
               LG+ ++  + F +M   G +PD +TY  +I      K+  +A R      V  ++L
Sbjct: 231 GLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHR------VYRQML 284

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G  +   T+  ++      G +  A     AM E R  V  ++               
Sbjct: 285 QSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEE-RGCVATVV--------------- 328

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                              Y+ LM G+ +EG VS  V +    R
Sbjct: 329 ----------------------------------TYSALMDGFCSEGNVSAAVELF---R 351

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R  D    P+ V+Y  ++  L +AG + +A     ++ +  +  +  T+N  L G CQ+L
Sbjct: 352 RMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRL 411

Query: 301 -QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +    EL   M       P++ SY+IL+DG         AL  F EM +RG+AP  + 
Sbjct: 412 DTVSDGVELFESMVSQGT-SPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVV 470

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           + TL++   ++ +   A +VF E+ R  R   D  ++  L++G  R   +EEA+ +   M
Sbjct: 471 FNTLIRWLCIAGRVDEALEVFRELER--RSAPDAWSYWSLLDGLSRCERMEEARLLSFHM 528

Query: 420 KENGFYP 426
           K  G  P
Sbjct: 529 KLQGCAP 535


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 199/439 (45%), Gaps = 44/439 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T   N ++   + +G  +    LF++M   G +PD ++Y VM+ +  +          
Sbjct: 168 PNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKW 227

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +LE G  +   TF  +++ + G G         +A+   RR V  +  E +L +++ 
Sbjct: 228 LSVMLERGFVVDNATFTLIISRFSGKG------YTTRALWYFRRLV-DMGLEPNLINFTC 280

Query: 176 ENEG--DDDDDDEVFEKL--------LPNSINPSSEPPLLPK------------------ 207
             EG        + FE L         PN    +S    L K                  
Sbjct: 281 MIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSE 340

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              PN   YT ++ GY  E +++    +L  M+ Q      P+  TYTT++    KAG+ 
Sbjct: 341 NHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQ---GLVPNTNTYTTLIDGHCKAGNF 397

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           +RA  ++  M+  G   N  TYN ++ G C++ ++ +A ++L +   +  ++PD  +YNI
Sbjct: 398 ERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNG-LKPDKFTYNI 456

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+      ++   AL  FN+M   GI P   SYTTL+  F   ++ K +   F+E +R  
Sbjct: 457 LMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIG 516

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            +  +    +M+  GYCR G +  A +   R+ ++G  P+  TYG++ +G+    K  EA
Sbjct: 517 IIPTNKTYTSMIC-GYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEA 575

Query: 448 LLLWKEIKER----CEVKK 462
             L+  + E+    CEV +
Sbjct: 576 RSLYDSMIEKGLVPCEVTR 594



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D A +  +++  +  G   + L  F ++ + G +P+++ +  MI+ LC R S K     +
Sbjct: 239 DNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFE-M 297

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR----ELDLE 171
           LE ++  G    + T  SL+      G  E A           R   K++R    + ++ 
Sbjct: 298 LEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKA----------FRLFLKLVRSENHKPNVL 347

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y++   G   +D     ++L + +          +   PN+  YTTL+ G+   G    
Sbjct: 348 TYTAMISGYCREDKLNRAEMLLSRMKE--------QGLVPNTNTYTTLIDGHCKAGNFER 399

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              ++  M  +      P+  TY  +V+ L K G +  A ++L +  + G+  ++ TYNI
Sbjct: 400 AYDLMNLMSSE---GFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNI 456

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+  +C+Q  I +A  L  +M     I+PD+ SY  LI  F   +    +  FF E    
Sbjct: 457 LMSEHCKQENIRQALALFNKMLKIG-IQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRI 515

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           GI PT  +YT+++  +       LA K F   L D     D + +  ++ G C+    +E
Sbjct: 516 GIIPTNKTYTSMICGYCREGNLTLAMKFFHR-LSDHGCAPDSITYGAIISGLCKQSKRDE 574

Query: 412 AKRIIERMKENGFYPNVATYGSLA 435
           A+ + + M E G  P   T  +LA
Sbjct: 575 ARSLYDSMIEKGLVPCEVTRITLA 598



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 173/411 (42%), Gaps = 44/411 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G++     ++ ++SR   SG      ++  F       R+  D  +    +P+   
Sbjct: 231 MLERGFVVDNATFTLIISRF--SGKGYTTRALWYF-------RRLVDMGL----EPNLIN 277

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           +  ++      G  K+  ++ ++M   G KP+V T+  +I  LC +   +      L+ +
Sbjct: 278 FTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLV 337

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL--DLEDYSSEN 177
                   + T+ ++++ Y     L  AE ++  M+E         + L  +   Y++  
Sbjct: 338 RSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKE---------QGLVPNTNTYTTLI 388

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +G     +  FE+        SSE       F+PN   Y  ++ G    GRV +  +ML 
Sbjct: 389 DGHCKAGN--FERAYDLMNLMSSEG------FSPNLCTYNAIVNGLCKRGRVQEAYKML- 439

Query: 238 AMRRQED---NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                ED   N   PD  TY  ++S   K  ++ +A  +  +M +IG+  +  +Y  L+ 
Sbjct: 440 -----EDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIA 494

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C++ ++ K  E+  E A    I P   +Y  +I G+    +   A+ FF+ +   G A
Sbjct: 495 VFCRENRM-KESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCA 553

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
           P  I+Y  ++      S+   A  ++D M+    V  ++    +  E YC+
Sbjct: 554 PDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYE-YCK 603



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 131/303 (43%), Gaps = 22/303 (7%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           +++ +   GR+ + V M+  M  Q      P+  T   ++    + G ++ A  +  EM 
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQ---GLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMC 197

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             GV  + I+Y +++  YC+   I +A + L  M +   +  D  ++ ++I  F     +
Sbjct: 198 VRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFV-VDNATFTLIISRFSGKGYT 256

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             AL +F  +   G+ P  I++T +++        K A ++ +EM+     K ++     
Sbjct: 257 TRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMV-GKGWKPNVYTHTS 315

Query: 399 LVEGYCRMGLVEEAKRIIERM-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           L++G C+ G  E+A R+  ++ +     PNV TY ++ +G     K   A +L   +KE+
Sbjct: 316 LIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQ 375

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                            L P+      L D   +A  F +A +++  M   G  PN   Y
Sbjct: 376 ----------------GLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTY 419

Query: 518 KKI 520
             I
Sbjct: 420 NAI 422


>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
 gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
          Length = 484

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 175/377 (46%), Gaps = 15/377 (3%)

Query: 88  GAKPDVLTYNVMIKLCA---RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
           G +P V  Y V I       + S    L+  +E   E G+      F +++  +   G +
Sbjct: 46  GHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEE--EDGLAPDSVCFNTVINGWCNEGQM 103

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN-PSSEPP 203
           E A  +VQ MR+             ++ Y     G  +   ++   LL  + N PSSE  
Sbjct: 104 EEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVA--GQAEQAQQLVLHLLNKTRNSPSSEDG 161

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L P    PN R   TL+  +  EGR+ +  R++  ++        PD VTY T+  A   
Sbjct: 162 LEP-VARPNLRTMNTLLNAWCREGRLEEAWRVVAMIK---SAGMQPDAVTYNTLAKAYAA 217

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +     ++A+M    +  N  TY IL+  YCQ    ++  +LL  +  +  + PDVV
Sbjct: 218 AGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEG-LHPDVV 276

Query: 324 SYNILIDGFILIDDSAGALTF-FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           ++N L+ G+   +D    L    + M A G+ P   +Y+T+M  ++ +     A  +  E
Sbjct: 277 AFNTLLKGYSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLE 336

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M +D RVK D+ A+ +L +GY R G   EA+ +++ M  +G  PNV  Y ++ +G     
Sbjct: 337 MQQD-RVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMG 395

Query: 443 KPGEALLLWKEIKERCE 459
           +  +AL + + + ER E
Sbjct: 396 RMDDALRVLELMLERGE 412



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/454 (21%), Positives = 189/454 (41%), Gaps = 81/454 (17%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V+ ++  ++ + A          K      + +++  + D ++   PD+  +N V
Sbjct: 46  GHRPSVECYTVAIAEVVAE---------KKMSEAQQLLKQMEEEDGLA---PDSVCFNTV 93

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK---LCARASRKHLLVFVL----- 116
           +N   N G+ ++ +++  +M +   +P   TYN +IK   +  +A +   LV  L     
Sbjct: 94  INGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTR 153

Query: 117 -----ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
                E  LE      + T  +L+ A+   G LE A  +V  ++                
Sbjct: 154 NSPSSEDGLEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSA-------------- 199

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                                  P++  Y TL K Y   GRV++
Sbjct: 200 ------------------------------------GMQPDAVTYNTLAKAYAAAGRVAE 223

Query: 232 TVRMLGAMRRQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              ++  M+    NA   P+  TY  ++S   + G  +R  Q+L+ +   G+  + + +N
Sbjct: 224 LEDLIADMK----NARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAFN 279

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            LLKGY Q+       E++ ++     + PDV +Y+ +++ +     +  A T   EM+ 
Sbjct: 280 TLLKGYSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLEMQQ 339

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             + P   ++  L K +  S +   A  +  +M     V  ++V +  ++ G+C MG ++
Sbjct: 340 DRVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHG-VAPNVVVYTTIISGWCSMGRMD 398

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           +A R++E M E G  PN+ T  +L  G   AR+P
Sbjct: 399 DALRVLELMLERGEAPNLNTVQTLVWGFCEARQP 432



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P+   YT  +       +   A ++  +M  +  +  D V +N ++ G+C  G +E
Sbjct: 45  QGHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQME 104

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           EA R+++ M++    P  +TY +L  G  +A +  +A  L   +  +    +   +++  
Sbjct: 105 EAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNK---TRNSPSSEDG 161

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L P  +P+   ++ L +   R     +A  +VA ++  G+ P+   Y  +
Sbjct: 162 LEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTL 211



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P V  +ST+++  +++G     +++ L ++   RV            KPD  A
Sbjct: 302 MAANGVRPDVTTYSTIMNWWSSAGMADKAQTI-LLEMQQDRV------------KPDVRA 348

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  +       G+  +   L   M   G  P+V+ Y  +I       R    + VLE +L
Sbjct: 349 FAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMDDALRVLELML 408

Query: 121 EMGITLCMTTFQSLVAAYV 139
           E G    + T Q+LV  + 
Sbjct: 409 ERGEAPNLNTVQTLVWGFC 427


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 166/358 (46%), Gaps = 20/358 (5%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
            ++++ + G  PDV  +NV++    +  + +    +   I + G+   + +F +L+  Y 
Sbjct: 212 FYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYC 271

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             G+L+    + + M E R  V   +    +       EG  DD +++F ++    +   
Sbjct: 272 KSGNLDQGFRLKRFMMENR--VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL--- 326

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                      PN   +TTL+ G+   GR    + +   M R+      PD +TY T+++
Sbjct: 327 ----------VPNDVTFTTLINGHCVTGRADLGMEIYQQMLRK---GVKPDVITYNTLIN 373

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L K G +  A++++ EMT+ G+  ++ TY +L+ G C++  ++ A E+ +EM  +  IE
Sbjct: 374 GLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG-IE 432

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
            D V++  LI GF        A     EM   GI P   +YT ++  F      K   K+
Sbjct: 433 LDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKL 492

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
             EM  D  V   +V +N+L+ G C+ G ++ A  +++ M   G  P+  TY  L  G
Sbjct: 493 LKEMQCDGHVP-GVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEG 549



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 176/435 (40%), Gaps = 73/435 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L  GY P V  ++ ++ RL    +    E+  LF  + KR             +P   +
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCK--EHKINEAQLLFGEIGKR-----------GLRPTVVS 262

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           +N ++N     G   +  +L   M E    PDV TY+V+I  LC            LE +
Sbjct: 263 FNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLE-M 321

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+     TF +L+  +   G  ++   I Q M                         
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQM------------------------- 356

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                    L K   P+   Y TL+ G    G + +  +++  M
Sbjct: 357 -------------------------LRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEM 391

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            ++      PD  TYT ++    K G ++ A ++  EM + G+  + + +  L+ G+C++
Sbjct: 392 TQR---GLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCRE 448

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+ +A+  LREM  +A I+PD  +Y ++I GF    D         EM+  G  P  ++
Sbjct: 449 GQVIEAERTLREML-EAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVT 507

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+       Q K AN + D ML    V  DI  +N+L+EG+C+ G  E+  ++    
Sbjct: 508 YNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDI-TYNILLEGHCKHGNREDFDKL---Q 563

Query: 420 KENGFYPNVATYGSL 434
            E G   +  +Y SL
Sbjct: 564 SEKGLVQDYGSYTSL 578



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 136/287 (47%), Gaps = 40/287 (13%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQE------------------------------- 243
           +++ LM  Y + G  SD ++    +R+                                 
Sbjct: 157 VFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEI 216

Query: 244 -DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D    PD   +  ++  L K   ++ A+ +  E+ + G+    +++N L+ GYC+   +
Sbjct: 217 LDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNL 276

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D+   L R M ++ ++ PDV +Y++LI+G         A   F EM  RG+ P  +++TT
Sbjct: 277 DQGFRLKRFMMEN-RVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTT 335

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+    ++ +  L  +++ +MLR   VK D++ +N L+ G C++G + EAK+++  M + 
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKG-VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQR 394

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           G  P+  TY  L +G     K G+   L   ++ R E+ KEG+  D+
Sbjct: 395 GLKPDKFTYTMLIDGCC---KEGD---LESALEIRKEMVKEGIELDN 435



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 147/383 (38%), Gaps = 97/383 (25%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    + TL+ GY   G +    R+    R   +N   PD  TY+ +++ L K G +D A
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRL---KRFMMENRVFPDVFTYSVLINGLCKEGQLDDA 314

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  EM   G+  N +T+  L+ G+C   + D   E+ ++M     ++PDV++YN LI+
Sbjct: 315 NKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG-VKPDVITYNTLIN 373

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G   + D   A     EM  RG+ P K +YT                             
Sbjct: 374 GLCKVGDLREAKKLVIEMTQRGLKPDKFTYT----------------------------- 404

Query: 391 VDIVAWNMLVEG-----------------------------------YCRMGLVEEAKRI 415
                  ML++G                                   +CR G V EA+R 
Sbjct: 405 -------MLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  M E G  P+ ATY  + +G     K G+    +K +KE        +  D  +P  +
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFC---KKGDVKTGFKLLKE--------MQCDGHVPGVV 506

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
             +  LL+ L     +    + A  ++  M   G+ P+   Y  I +E H      KH +
Sbjct: 507 TYN-VLLNGLC----KQGQMKNANMLLDAMLNLGVVPDDITY-NILLEGH-----CKHGN 555

Query: 536 QARQDRRRERKRAAEAFKFWLGL 558
           +   D+ +  K   + +  +  L
Sbjct: 556 REDFDKLQSEKGLVQDYGSYTSL 578



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 141/335 (42%), Gaps = 47/335 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +   P V  +S +++ L   G           D   K   +  D  +V    P+   
Sbjct: 286 MMENRVFPDVFTYSVLINGLCKEGQ---------LDDANKLFLEMCDRGLV----PNDVT 332

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           +  ++N     G+    ++++ QM   G KPDV+TYN +I  LC     +     V+E +
Sbjct: 333 FTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIE-M 391

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE--- 176
            + G+     T+  L+      GDLE A  I       R+++ K   ELD   +++    
Sbjct: 392 TQRGLKPDKFTYTMLIDGCCKEGDLESALEI-------RKEMVKEGIELDNVAFTALISG 444

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG   + +    ++L   I P             +   YT ++ G+  +G V    +
Sbjct: 445 FCREGQVIEAERTLREMLEAGIKP-------------DDATYTMVIHGFCKKGDVKTGFK 491

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M   + +   P  VTY  +++ L K G M  A  +L  M  +GV  + ITYNILL+
Sbjct: 492 LLKEM---QCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           G+C+       +E   ++  +  +  D  SY  LI
Sbjct: 549 GHCKH----GNREDFDKLQSEKGLVQDYGSYTSLI 579



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 21/256 (8%)

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G   + + +++L+  Y        A +  R +     ++    S   L D  + ++ ++ 
Sbjct: 150 GTHQSNLVFSVLMNAYTDSGYFSDAIQCFR-LVRKHNLQIPFHSCGYLFDRLMKLNLTSP 208

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A  F+ E+   G  P    +  LM       +   A  +F E+ +   ++  +V++N L+
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG-LRPTVVSFNTLI 267

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            GYC+ G +++  R+   M EN  +P+V TY  L NG+    +  +A  L+ E+ +R  V
Sbjct: 268 NGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLV 327

Query: 461 KKE----------GVNADSDLP---------PPLKPDEELLDALADICVRAAFFRKALEI 501
             +           V   +DL            +KPD    + L +   +    R+A ++
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387

Query: 502 VACMEEHGIPPNKTKY 517
           V  M + G+ P+K  Y
Sbjct: 388 VIEMTQRGLKPDKFTY 403


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 119/534 (22%), Positives = 226/534 (42%), Gaps = 54/534 (10%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDSK--------PDTAAYNAVLNACANLGKPKKFLQL 80
           ++  KL   +VK  + +    ++S SK        PD    + +++  ++L +      +
Sbjct: 95  IQFTKLLSAIVKMGQYYGA--VISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSV 152

Query: 81  FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140
           F +M + G +PD +T+N +I    +  +    V   +     G    + T+ +++     
Sbjct: 153 FSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCK 212

Query: 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS 200
            G+   A  + + M E       +   + ++                 +KL+  +++  S
Sbjct: 213 IGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCK-------------DKLVNEALDIFS 259

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
              +  K  +P+   Y +L++G  N  R  +   +L  M         P+  T+  +V A
Sbjct: 260 Y--MKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLN---IMPNIFTFNVLVDA 314

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           + K G +  A+ V   MT +GV  + +TY+ L+ GY  +++I +A++L   M      +P
Sbjct: 315 ICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG-CKP 373

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D  SYNILI G+        A   FNEM  +G+ P  ++Y TL+       + + A  +F
Sbjct: 374 DAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLF 433

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             M  +  +  D+  ++ML++G+C+ G + +A R+   M+     P++A Y  L + +  
Sbjct: 434 KNMHSNGNLP-DLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCK 492

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
                +A  L+ E+                    L P+ ++   + +   +     +ALE
Sbjct: 493 FGNLKDARKLFSEL----------------FVQGLLPNVQIYTTIINNLCKEGLLDEALE 536

Query: 501 IVACMEEHGIPPNKTKYKKIYVEMHSRMFTS-KHASQARQ--DRRRERKRAAEA 551
               ME  G PP++  Y  I      R F   K  S+A Q     R+R   AEA
Sbjct: 537 AFRNMEGDGCPPDEFSYNVII-----RGFLQYKDESRAAQLIGEMRDRGFVAEA 585



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 190/455 (41%), Gaps = 68/455 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P    ++T+++ L   G     ++V+ FD        F      S  +P    
Sbjct: 156 MIKLGLQPDAVTFNTLINGLCKVGK--FAQAVEFFD-------DFE----ASGCQPTVYT 202

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G+      LF +M E G +P+V+TYN++I    +    +  + +   + 
Sbjct: 203 YTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMK 262

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              I+  + T+ SL+     F   + A  ++  M                          
Sbjct: 263 AKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM-------------------------- 296

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                         S+N      ++P  F  N      L+     EG+VS+     G  +
Sbjct: 297 -------------TSLN------IMPNIFTFN-----VLVDAICKEGKVSEAQ---GVFK 329

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    PD VTY++++        +  AR++   M   G   +  +YNIL+KGYC+  
Sbjct: 330 TMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAK 389

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID+AK+L  EM     + PD V+YN LI G   +     A   F  M + G  P   +Y
Sbjct: 390 RIDEAKQLFNEMIHQG-LTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTY 448

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L+  F        A ++F  +++   +K DI  +N+L++  C+ G +++A+++   + 
Sbjct: 449 SMLLDGFCKEGYLGKAFRLF-RVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELF 507

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             G  PNV  Y ++ N +       EAL  ++ ++
Sbjct: 508 VQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNME 542



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 19/281 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLA-EMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           P  + +T ++SA+VK G    A   L+ +M   G+  +  T +IL+  +    ++D A  
Sbjct: 92  PCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFS 151

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +  +M     ++PD V++N LI+G   +   A A+ FF++  A G  PT  +YTT++   
Sbjct: 152 VFSKMIK-LGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGL 210

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               +   A  +F +M  +   + ++V +N+L++  C+  LV EA  I   MK     P+
Sbjct: 211 CKIGETTAAAGLFKKM-EEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPD 269

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + TY SL  G+   R+  EA  L  E+                    + P+    + L D
Sbjct: 270 IFTYNSLIQGLCNFRRWKEASALLNEMTSL----------------NIMPNIFTFNVLVD 313

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
              +     +A  +   M E G+ P+   Y  +      RM
Sbjct: 314 AICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRM 354


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 184/437 (42%), Gaps = 62/437 (14%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRK 109
           V   + +    N ++N   +LG+      +  ++ + G +PD +T N ++K LC +   K
Sbjct: 38  VKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVK 97

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRE 167
             L F  ++++  G  +   ++ +L+      G+   A  +++ +  R  R +V      
Sbjct: 98  KSLHF-HDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTI 156

Query: 168 LD-LEDYSSENEGDDDDDDEVFEKLLPNSINPSS-----------------EPPLLPKTF 209
           +D L      NE  D   +     + P++I  ++                    ++ K  
Sbjct: 157 IDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNI 216

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P   IY  L+     EG V +   +L  M ++      P  VTY+T++      G +  
Sbjct: 217 NPGVYIYNILINALCKEGNVKEAKNLLAVMTKE---GIKPGVVTYSTLMDGYCLVGEVQN 273

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A+Q+   M ++GV  N  +YNI++ G C+  ++D+A  LLREM     + PD V+YN LI
Sbjct: 274 AKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV-PDTVTYNSLI 332

Query: 330 DGFILIDDSAGALTFFNE-----------------------------------MRARGIA 354
           DG         AL   NE                                   M+ RGI 
Sbjct: 333 DGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 392

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT  +YT L+       + K A ++F  +L      +D+  + +++ G C+ G+ +EA  
Sbjct: 393 PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCC-IDVWTYTVMISGLCKEGMFDEALA 451

Query: 415 IIERMKENGFYPNVATY 431
           I  +M++NG  PN  T+
Sbjct: 452 IKSKMEDNGCIPNAVTF 468



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 145/317 (45%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L   + P++    TLMKG   +G V  ++     +  Q       DHV+Y T+++ L K
Sbjct: 71  ILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQ---GFQMDHVSYGTLLNGLCK 127

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G    A ++L  +       N + YN ++ G C+   +++A +L  EM D   I PD +
Sbjct: 128 IGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM-DARGIFPDAI 186

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI GF L+    GA +  +EM  + I P    Y  L+ A       K A  +   M
Sbjct: 187 TYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVM 246

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            ++  +K  +V ++ L++GYC +G V+ AK+I   M + G  PNV +Y  + NG+   ++
Sbjct: 247 TKEG-IKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 305

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA+ L +E+                L   + PD    ++L D   ++     AL ++ 
Sbjct: 306 VDEAMNLLREM----------------LHKNMVPDTVTYNSLIDGLCKSGRITSALNLMN 349

Query: 504 CMEEHGIPPNKTKYKKI 520
            M   G P +   Y  +
Sbjct: 350 EMHHRGQPADVVTYTSL 366



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 21/314 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ + F  +   Y TL+ G    G     V++L   R  ED ++ P+ V Y T++  L K
Sbjct: 106 VVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLL---RMIEDRSTRPNVVMYNTIIDGLCK 162

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A  + +EM   G+  + ITY  L+ G+C   Q+  A  LL EM     I P V 
Sbjct: 163 DKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILK-NINPGVY 221

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            YNILI+      +   A      M   GI P  ++Y+TLM  + L  + + A ++F  M
Sbjct: 222 IYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAM 281

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           ++   V  ++ ++N+++ G C+   V+EA  ++  M      P+  TY SL +G+  + +
Sbjct: 282 VQ-MGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 340

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
              AL L  E+  R +            P  +     LLDAL     +     KA  +  
Sbjct: 341 ITSALNLMNEMHHRGQ------------PADVVTYTSLLDALC----KNQNLDKATALFM 384

Query: 504 CMEEHGIPPNKTKY 517
            M+E GI P    Y
Sbjct: 385 KMKERGIQPTMYTY 398



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 119/272 (43%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + +  ++ +L K      A  +  +M   G+ AN +T NIL+  +C   Q+  +  +
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L ++      +PD ++ N L+ G  L  +   +L F +++ A+G     +SY TL+    
Sbjct: 68  LGKIL-KLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLC 126

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              + + A K+   M+ D   + ++V +N +++G C+  LV EA  +   M   G +P+ 
Sbjct: 127 KIGETRCAVKLL-RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDA 185

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY +L  G  L  +   A  L  E+                +   + P   + + L + 
Sbjct: 186 ITYTTLIYGFCLLGQLMGAFSLLDEM----------------ILKNINPGVYIYNILINA 229

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +    ++A  ++A M + GI P    Y  +
Sbjct: 230 LCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTL 261



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 127/299 (42%), Gaps = 23/299 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    Y+ +++    +G+ +   Q+F  M + G  P+V +YN+MI    +  R    + 
Sbjct: 252 KPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMN 311

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +L   +     T+ SL+      G +  A  ++  M   R     ++    L D  
Sbjct: 312 LLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHH-RGQPADVVTYTSLLDAL 370

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N+ + D    +F K+    I P+                YT L+ G    GR+ +   
Sbjct: 371 CKNQ-NLDKATALFMKMKERGIQPTMYT-------------YTALIDGLCKGGRLKNAQE 416

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   +  +       D  TYT ++S L K G  D A  + ++M   G   N +T+ I+++
Sbjct: 417 LFQHLLVK---GCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIR 473

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              ++ + DKA++LL EM     +  D    ++ +      +++  A    +EM A+G+
Sbjct: 474 SLFEKDENDKAEKLLHEMIAKGLLVLDFKVADVFVQ-----NENDKAEKLLHEMIAKGL 527



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 119/312 (38%), Gaps = 70/312 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G  P+V +++ +++ L            K  D  +  +R+    ++V    PDT  
Sbjct: 281 MVQMGVNPNVYSYNIMINGLC---------KCKRVDEAMNLLREMLHKNMV----PDTVT 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G+    L L ++MH  G   DV+TY  ++    +         +  ++ 
Sbjct: 328 YNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E GI   M T+ +L+      G L+ A+ + Q                            
Sbjct: 388 ERGIQPTMYTYTALIDGLCKGGRLKNAQELFQ---------------------------- 419

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                  LL K    +   YT ++ G   EG   +    L    
Sbjct: 420 ----------------------HLLVKGCCIDVWTYTVMISGLCKEGMFDEA---LAIKS 454

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           + EDN   P+ VT+  ++ +L +    D+A ++L EM   G+    +  +  +     Q 
Sbjct: 455 KMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL----LVLDFKVADVFVQN 510

Query: 301 QIDKAKELLREM 312
           + DKA++LL EM
Sbjct: 511 ENDKAEKLLHEM 522


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 211/455 (46%), Gaps = 38/455 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G +P V +++++++ L   G    V E++ LF+ + K            D++P+++ YN 
Sbjct: 352 GCIPSVVSFNSILTCL---GKKRKVDEALTLFEAMKK------------DAEPNSSTYNI 396

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++     GK ++   + D+M   G  P++LT N+M+    +A +      + E   + G
Sbjct: 397 IIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRG 456

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
                 T+ SL+      G+++ A  + + M +   +   ++    + ++     G  +D
Sbjct: 457 CNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFM--HGRKED 514

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMRRQ 242
             ++F+++      P  +  LL      N+ +      G + +GR + + ++  G +   
Sbjct: 515 GHKIFKEMNRRGCQP--DLTLL------NTYMDCVFKAGDVEKGRAIFEDIKGYGFL--- 563

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 PD  +Y+ ++  L KAG       +   M + G   +   YN ++ G+C+  ++
Sbjct: 564 ------PDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKL 617

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           DKA E+L EM    ++ P V +Y  +IDG   ID    A   F E +++GI    I Y++
Sbjct: 618 DKAYEVLEEM-KVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSS 676

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  F    +   A  + +EM++   +  ++  WN L++   +   + EA    + MKE 
Sbjct: 677 LIDGFGKVGRIDEAYLILEEMMKKG-LTPNVYTWNSLMDALVKAEEINEALICFQSMKEM 735

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              PN  TY  L NG+   +K  +A + W+E++++
Sbjct: 736 KCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQ 770



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 108/488 (22%), Positives = 202/488 (41%), Gaps = 52/488 (10%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD  +Y +++      G+  +  +LF QM    A P    YN MI     A +      
Sbjct: 284 KPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYK 343

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR---EGRRDVCKIIRELDLE 171
           +L+++ E G    + +F S++        ++ A T+ +AM+   E       II  +D+ 
Sbjct: 344 LLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNII--IDML 401

Query: 172 DYSSENEGDDDDDDEV-FEKLLPN--SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
             + + E      DE+    L PN  ++N   +     K F P   ++ T          
Sbjct: 402 CMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFET---------- 451

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
                              +P+ VTY +++  L K G++D A ++   M   G  AN + 
Sbjct: 452 -------------ASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVV 498

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y  L++ +    + +   ++ +EM +    +PD+   N  +D      D       F ++
Sbjct: 499 YTSLIRNFFMHGRKEDGHKIFKEM-NRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDI 557

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
           +  G  P   SY+ L+     + Q +  + +F  M +     +D  A+N +V+G+C+ G 
Sbjct: 558 KGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAM-KQQGFALDARAYNAVVDGFCKSGK 616

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------- 457
           +++A  ++E MK     P VATYGS+ +G++   +  EA +L++E K +           
Sbjct: 617 LDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSS 676

Query: 458 --------CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
                     + +  +  +  +   L P+    ++L D  V+A    +AL     M+E  
Sbjct: 677 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMK 736

Query: 510 IPPNKTKY 517
             PN   Y
Sbjct: 737 CSPNTYTY 744



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 146/308 (47%), Gaps = 23/308 (7%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ D  R++ AMRR +     P    YT ++ A+ +A   +RA ++L +M  +G      
Sbjct: 162 RLDDAERVIAAMRRLK---FRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVP 218

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            +  L++   ++ +++ A  L+ E+     +EPD+V YN+ ID F    +   A  FF+E
Sbjct: 219 LFTTLVRALAREGRVEGALALVDEVKGSC-LEPDIVLYNVCIDCFGKAGNVDMAWKFFHE 277

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           ++++G+ P  +SYT+++     + +   A ++F +M  +  V     A+N ++ GY   G
Sbjct: 278 LKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPC-AYAYNTMIMGYGSAG 336

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
             E A ++++++KE G  P+V ++ S+   +   RK  EAL L++ +K+  E      N 
Sbjct: 337 QFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNI 396

Query: 468 DSDL------------------PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
             D+                     L P+   ++ + D   +A  F  A E+     + G
Sbjct: 397 IIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRG 456

Query: 510 IPPNKTKY 517
             PN   Y
Sbjct: 457 CNPNSVTY 464



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 121/557 (21%), Positives = 221/557 (39%), Gaps = 79/557 (14%)

Query: 6   YLPH-VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS------KPDT 58
           +L H + A   V+  ++  G   P  +       + R R+  D + V  +      +P  
Sbjct: 123 FLSHDLAAMEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAF 182

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFG------------------------------ 88
           +AY  ++ A A   +P++ L+L  QM E G                              
Sbjct: 183 SAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDE 242

Query: 89  -----AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
                 +PD++ YNV I    +A    +       +   G+     ++ S++      G 
Sbjct: 243 VKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGR 302

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203
           L  AE +   M   R   C       +  Y S   G  ++  ++ ++L         E  
Sbjct: 303 LSEAEELFGQMETERAVPCAYAYNTMIMGYGS--AGQFENAYKLLDQL--------KERG 352

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
            +P   + NS I T L K    + +V + + +  AM++     + P+  TY  ++  L  
Sbjct: 353 CIPSVVSFNS-ILTCLGK----KRKVDEALTLFEAMKKD----AEPNSSTYNIIIDMLCM 403

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG ++ A  +  EM   G+  N +T NI++   C+  + + A E+  E A      P+ V
Sbjct: 404 AGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMF-ETASQRGCNPNSV 462

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LIDG     +   A   F  M   G     + YT+L++ F +  + +  +K+F EM
Sbjct: 463 TYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEM 522

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R    + D+   N  ++   + G VE+ + I E +K  GF P+V +Y  L +G++ A +
Sbjct: 523 NRRG-CQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 581

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             E   ++  +K++                    D    +A+ D   ++    KA E++ 
Sbjct: 582 ARETSSIFHAMKQQ----------------GFALDARAYNAVVDGFCKSGKLDKAYEVLE 625

Query: 504 CMEEHGIPPNKTKYKKI 520
            M+   +PP    Y  I
Sbjct: 626 EMKVKRVPPTVATYGSI 642



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 131/348 (37%), Gaps = 67/348 (19%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+LP V+++S ++  L  +G     E+  +F  + ++               D  AYNAV
Sbjct: 561 GFLPDVRSYSILIHGLTKAGQ--ARETSSIFHAMKQQGFAL-----------DARAYNAV 607

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K  ++ ++M      P V TY  +I   A+  R      + E     GI
Sbjct: 608 VDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGI 667

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            L +  + SL+    GFG +            GR D   +I E                 
Sbjct: 668 ELNVIVYSSLID---GFGKV------------GRIDEAYLILE----------------- 695

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              ++ K   PN   + +LM   +    +++ +    +M+  + 
Sbjct: 696 ------------------EMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMK- 736

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+  TY+ +++ L +    ++A     EM + G+  N +TY  ++ G  +   I  
Sbjct: 737 --CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITD 794

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           A  L      +    PD  S+N LI+G    + +  A   F E R +G
Sbjct: 795 ACSLFERFKANGGT-PDAASFNALIEGMSHANRAIEAYHVFEETRLKG 841


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 215/475 (45%), Gaps = 44/475 (9%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D    N ++N   +LG+      +   + + G  PDV+T   +IK LC R   K  L F 
Sbjct: 103 DLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKF- 161

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + ++ +   L   ++ +L+      G+ + A   +Q MR             +LE+ S 
Sbjct: 162 HDDVVALEFQLDRISYGTLINGLCKIGETKAA---IQLMR-------------NLEERSI 205

Query: 176 ENEG---DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           + +    +   D     KL+  + N  SE  +  K   PN   YTTL+ G+   G + + 
Sbjct: 206 KPDVVMYNIIIDSLCKNKLVGEACNLYSE--MNAKQIYPNVVTYTTLIYGFCIMGCLIEA 263

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V +L  M+ +  N   PD  T++ ++ AL K G M  A+ VLA M +  V  + +TYN L
Sbjct: 264 VALLNEMKLKNIN---PDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSL 320

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + GY    ++  AK +   MA    + P V SY I+IDG         A++ F EM+ + 
Sbjct: 321 VDGYFLVNEVKHAKYVFNSMAQSG-VTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKN 379

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  I++ +L+     S +      + D+M RD     D++ ++ L++  C+   +++A
Sbjct: 380 VIPNTITFNSLIDGLCKSGRIAYVWDLVDKM-RDRSQLADVITYSSLIDALCKNCHLDQA 438

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             + ++M      P++ TY  L +G+      G  L + +E+ +   +K  G + D    
Sbjct: 439 IALFKKMITQEIQPDMYTYTILIDGLC----KGGRLKIAQEVFQHLLIK--GYHLDIRTY 492

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
             +         ++  C +A  F +AL +++ ME++G  PN   +  I   +  +
Sbjct: 493 TVM---------ISGFC-KAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEK 537



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 191/435 (43%), Gaps = 41/435 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P V   +T++  L   G+             VK+  KF D  +  + + D  +
Sbjct: 130 ILKRGYHPDVITLTTLIKGLCLRGE-------------VKKALKFHDDVVALEFQLDRIS 176

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y  ++N    +G+ K  +QL   + E   KPDV+ YN++I  LC    +  L+       
Sbjct: 177 YGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLC----KNKLVGEACNLY 232

Query: 120 LEMG---ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            EM    I   + T+ +L+  +   G L  A  ++  M+   +++   +    +   +  
Sbjct: 233 SEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMK--LKNINPDVYTFSILIDALG 290

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            EG       V   ++   +              P+   Y +L+ GY     V     + 
Sbjct: 291 KEGKMKAAKIVLAVMMKAYVK-------------PDVVTYNSLVDGYFLVNEVKHAKYVF 337

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            +M +   +   P   +YT ++  L K   +D A  +  EM    V  N IT+N L+ G 
Sbjct: 338 NSMAQ---SGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGL 394

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+  +I    +L+ +M D +++  DV++Y+ LID          A+  F +M  + I P 
Sbjct: 395 CKSGRIAYVWDLVDKMRDRSQL-ADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPD 453

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +YT L+       + K+A +VF  +L      +DI  + +++ G+C+ GL +EA  ++
Sbjct: 454 MYTYTILIDGLCKGGRLKIAQEVFQHLLIKGY-HLDIRTYTVMISGFCKAGLFDEALALL 512

Query: 417 ERMKENGFYPNVATY 431
            +M++NG  PN  T+
Sbjct: 513 SKMEDNGCIPNAITF 527



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 131/305 (42%), Gaps = 31/305 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V  +S ++  L   G +G +++ K+   V+ +          +  KPD   YN++++ 
Sbjct: 277 PDVYTFSILIDAL---GKEGKMKAAKIVLAVMMK----------AYVKPDVVTYNSLVDG 323

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
              + + K    +F+ M + G  P V +Y +MI    +       + + E +    +   
Sbjct: 324 YFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPN 383

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             TF SL+      G +     +V  MR+ R  +  +I    L D   +N    D    +
Sbjct: 384 TITFNSLIDGLCKSGRIAYVWDLVDKMRD-RSQLADVITYSSLIDALCKN-CHLDQAIAL 441

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F+K++   I P             +   YT L+ G    GR+     +   +  +     
Sbjct: 442 FKKMITQEIQP-------------DMYTYTILIDGLCKGGRLKIAQEVFQHLLIK---GY 485

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           H D  TYT ++S   KAG  D A  +L++M   G   N IT++I++    ++ + DKA++
Sbjct: 486 HLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEK 545

Query: 308 LLREM 312
           LLREM
Sbjct: 546 LLREM 550



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 137/329 (41%), Gaps = 46/329 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  ++     +G   + + L ++M      PDV T++++I    +  +      V
Sbjct: 242 PNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIV 301

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +++  +   + T+ SLV  Y    +++ A+ +  +M +             ++ Y+ 
Sbjct: 302 LAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTP-------GVQSYTI 354

Query: 176 ENEGDD-----DDDDEVFEKL-----LPNSINPSSEPPLLPKTFAPNSRI---------- 215
             +G       D+   +FE++     +PN+I  +S    L      + RI          
Sbjct: 355 MIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNS----LIDGLCKSGRIAYVWDLVDKM 410

Query: 216 -----------YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                      Y++L+        +   + +   M  QE     PD  TYT ++  L K 
Sbjct: 411 RDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQE---IQPDMYTYTILIDGLCKG 467

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +  A++V   +   G   +  TY +++ G+C+    D+A  LL +M D+  I P+ ++
Sbjct: 468 GRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCI-PNAIT 526

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGI 353
           ++I+I      D++  A     EM ARG+
Sbjct: 527 FDIIICALFEKDENDKAEKLLREMIARGL 555


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 5/244 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y +L+ G    G++ + V +   M  +      PD V Y  ++    K G M  A
Sbjct: 120 PNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR---GCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  EM   G      TYN LL G+ ++ +  + + L ++M     + P++ ++N L+D
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV-PNIFTFNNLLD 235

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           GF  + D   A   F EMR+ G  P  +SY TLM+      +P  A ++  EM+R   V 
Sbjct: 236 GFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSG-VG 294

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DIV++N+L++GY + G ++ A ++   + ++G  P+  +Y ++ + +  A K G A ++
Sbjct: 295 PDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVV 354

Query: 451 WKEI 454
           +K++
Sbjct: 355 FKDM 358



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 179/402 (44%), Gaps = 20/402 (4%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  Y  +L +     + ++   +F  M   G  P+V +Y+++I    R  +      +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +++ G    + T+ SL++     G L+ A  +   M         ++  + ++ +S 
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFS- 168

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +GD  +   +FE++L        E   +P  F      Y +L+ G+  +G       +
Sbjct: 169 -KKGDMGEAYRLFEEML--------EKGCIPTVFT-----YNSLLSGFSRKGEFGRVQSL 214

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M RQ      P+  T+  ++    K G M  A ++  EM  +G P + ++YN L++G
Sbjct: 215 FKDMLRQ---GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRG 271

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C + +  +A+ LLREM     + PD+VSYNILIDG+        A+  F E+   G+ P
Sbjct: 272 MCSKGKPHEAQRLLREMIRSG-VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEP 330

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              SY+T++     + +   A  VF +M+ +     D      LV G CR   + E+  +
Sbjct: 331 DAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAP-DAAVVIPLVIGLCRGERLTESCEL 389

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            + M +    P +  Y  L   +  A++  +   ++ E+ ER
Sbjct: 390 FQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTER 431



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 121/283 (42%), Gaps = 22/283 (7%)

Query: 248 HPDH--VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
           H +H  ++Y  ++  L K+G  D       +M   G   N  TY  LL+  CQ  + ++A
Sbjct: 12  HYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEA 71

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           + + R MA      P+V SY+ILI G         A    NEM   G  P  ++Y +L+ 
Sbjct: 72  RSVFRGMAAQG-CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS 130

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                 + K A  +F  M+       D V +N+L++G+ + G + EA R+ E M E G  
Sbjct: 131 GLCKMGKLKEAVDLFSRMVYRG-CPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI 189

Query: 426 PNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
           P V TY SL +G S   + G    L+K+ +++ C              P +     LLD 
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC-------------VPNIFTFNNLLDG 236

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
              +       R  LE    M   G PP+   Y  +   M S+
Sbjct: 237 FCKMGDMVEAHRLFLE----MRSLGCPPDVVSYNTLMRGMCSK 275



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 146/356 (41%), Gaps = 34/356 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P+V  + +++S L   G     E+V LF  +V R              PD   
Sbjct: 113 MIDGGHQPNVVTYGSLLSGLCKMGK--LKEAVDLFSRMVYR-----------GCPPDGVV 159

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++  +  G   +  +LF++M E G  P V TYN ++   +R      +  + + +L
Sbjct: 160 YNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDML 219

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
             G    + TF +L+  +   GD+  A  +   MR        +    D+  Y++   G 
Sbjct: 220 RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMR-------SLGCPPDVVSYNTLMRGM 272

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                    ++LL   I     P ++          Y  L+ GY   G +   +++   +
Sbjct: 273 CSKGKPHEAQRLLREMIRSGVGPDIVS---------YNILIDGYSKSGALDHAIKLFYEI 323

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            +   +   PD  +Y+T++  L +AG +  A  V  +M   G   +      L+ G C+ 
Sbjct: 324 PK---SGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRG 380

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            ++ ++ EL + M     + P +  YN+L+        S      F+E+  RG +P
Sbjct: 381 ERLTESCELFQAMVKFECV-PLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSP 435



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 28/225 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLF----------DVVV----------- 39
           MLR G +P++  ++ ++      GD   VE+ +LF          DVV            
Sbjct: 218 MLRQGCVPNIFTFNNLLDGFCKMGD--MVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSK 275

Query: 40  ---KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
                 ++     I S   PD  +YN +++  +  G     ++LF ++ + G +PD  +Y
Sbjct: 276 GKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           + +I    RA +      V + ++  G          LV        L  +  + QAM  
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMV- 394

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
            + +   +I E +L  Y        DD  E+F +L     +P  E
Sbjct: 395 -KFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVE 438


>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
 gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 188/406 (46%), Gaps = 37/406 (9%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+ AY   GD   AE ++++M  G   V  ++    L +      G  ++ + +F +
Sbjct: 119 FLMLITAYGKLGDFNGAEMVLRSM-NGNGYVPNVVSHTALMEAYGRG-GRYNNAEAIFRR 176

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +       +S P        P++  Y  ++K ++   +  +   +   +  +E++   PD
Sbjct: 177 M------QTSGPE-------PSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPD 223

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
              +  ++    KAG+ ++AR+V A M   GVP + +TYN L+       ++ K  + ++
Sbjct: 224 QKMFHMMIYMQKKAGNYEKARKVFALMAERGVPQSTVTYNSLMSFETNYKEVSKIYDQMQ 283

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
                + + PDVVSY +LI  +        AL  F EM   G+ P+  +Y  L+ AFA+S
Sbjct: 284 R----SGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAIS 339

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
              + A  VF  M RD R   D+ ++  ++  Y     +E A+   +R++++G  PNV T
Sbjct: 340 GMVEQARVVFKSMRRD-RCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVT 398

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           YG+L  G +      + + +++E++         +N+       +K ++ +L  + D   
Sbjct: 399 YGALIKGHAKVNNLEKMMEIYEEMQ---------LNS-------IKANQTILTTIMDAYG 442

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
           +   F  A+     ME HG+PP++ K + I + +       K ASQ
Sbjct: 443 KNKDFGSAVIWYKEMEHHGVPPDQ-KAQNILLSLAKTQDEQKEASQ 487



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 162/385 (42%), Gaps = 27/385 (7%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++ A   LG       +   M+  G  P+V+++  +++   R  R +    +  R+   G
Sbjct: 122 LITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSG 181

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSENEGDDD 182
                 T+Q ++  +V     + AE + + +        +  +++  +  Y  +  G+ +
Sbjct: 182 PEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYE 241

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRR 241
              +VF               L+ +   P S + Y +LM    N   VS   ++   M+R
Sbjct: 242 KARKVF--------------ALMAERGVPQSTVTYNSLMSFETNYKEVS---KIYDQMQR 284

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
              +   PD V+Y  ++ A  +A   + A  V  EM   GV  +   YNILL  +     
Sbjct: 285 ---SGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGM 341

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +++A+ + + M  D +  PD+ SY  ++  ++   D  GA  FF  +R  G+ P  ++Y 
Sbjct: 342 VEQARVVFKSMRRD-RCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYG 400

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+K  A  +  +   ++++EM  +  +K +      +++ Y +      A    + M+ 
Sbjct: 401 ALIKGHAKVNNLEKMMEIYEEMQLNS-IKANQTILTTIMDAYGKNKDFGSAVIWYKEMEH 459

Query: 422 NGFYPNVATYGSLANGISLARKPGE 446
           +G  P+      L   +SLA+   E
Sbjct: 460 HGVPPDQKAQNIL---LSLAKTQDE 481



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 116/254 (45%), Gaps = 25/254 (9%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T  YN++++   N    K+  +++DQM   G +PDV++Y ++IK   RA R+   + V E
Sbjct: 259 TVTYNSLMSFETNY---KEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFE 315

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELDLEDYSS 175
            +L+ G+      +  L+ A+   G +E A  + ++MR  R   D+C     L     +S
Sbjct: 316 EMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNAS 375

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + EG ++     F++L  + +              PN   Y  L+KG+    +V++  +M
Sbjct: 376 DMEGAEN----FFKRLRQDGLK-------------PNVVTYGALIKGH---AKVNNLEKM 415

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +      + N+   +    TT++ A  K      A     EM   GVP ++   NILL  
Sbjct: 416 MEIYEEMQLNSIKANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSL 475

Query: 296 YCQQLQIDKAKELL 309
              Q +  +A +L+
Sbjct: 476 AKTQDEQKEASQLV 489



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G  P  KA++ ++   A SG    VE  +   VV K +R+           PD  +
Sbjct: 317 MLDAGVRPSHKAYNILLDAFAISG---MVEQAR---VVFKSMRR-------DRCTPDLCS 363

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+A  N    +     F ++ + G KP+V+TY  +IK  A+ +    ++ + E + 
Sbjct: 364 YTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQ 423

Query: 121 EMGITLCMTTFQSLVAAY 138
              I    T   +++ AY
Sbjct: 424 LNSIKANQTILTTIMDAY 441


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 113/504 (22%), Positives = 205/504 (40%), Gaps = 76/504 (15%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+++ ++ ++  L A GD     +V LF  + +R              PD   Y+ +++ 
Sbjct: 156 PNLQTYNIILRSLCARGDVD--RAVSLFSSLRRR-----------GVAPDRVTYSTLMSG 202

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL-EMGITL 126
            A   +    L L D+M  +G + D + YN ++  C R       + V E+++ + G + 
Sbjct: 203 LAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASP 262

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T++ ++      G  + A  +   M         +   + +        GD D    
Sbjct: 263 NLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLC--RSGDVDSAAR 320

Query: 187 VFEKLLPNS-INPSSEPPLLPKTFAPNSRI--------------------YTTLMKGYMN 225
           V+  ++    +   S    L K F    R                     Y  + KG ++
Sbjct: 321 VYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLD 380

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE--------- 276
            G VS+   +L  +  + D +  PD VT+ T++  L + G  +RA ++L +         
Sbjct: 381 SGMVSEATELLKQL--ENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELD 438

Query: 277 --------------------------MTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
                                     M + G   N   YN L+ G+C+  +I+ A ++  
Sbjct: 439 VFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYI 498

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           EM  +    P +++YN LIDG    +    A +   EM  RG  P   +Y +L++     
Sbjct: 499 EMTSNGCC-PTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRD 557

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
            +  +A +++DE+L D  ++VD++  N+L+ G C  G V+EA  I   MKE    PN+ T
Sbjct: 558 KKVDVALRIWDEIL-DAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVT 616

Query: 431 YGSLANGISLARKPGEALLLWKEI 454
           Y +L +G        +A  LW  I
Sbjct: 617 YNTLMDGFYEIGSIDKAASLWTAI 640



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 123/550 (22%), Positives = 214/550 (38%), Gaps = 117/550 (21%)

Query: 34  LFDVVVKRVRKFSDPDIVSDS----------KPDTAAYNAVLNACANLGKPKKFLQLFDQ 83
           L D  V R R++SD D    S           P+   YN +L +    G   + + LF  
Sbjct: 125 LLDAFV-RARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSS 183

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           +   G  PD +TY+ ++   A+  +    + +L+ +   G+      + +L++     G 
Sbjct: 184 LRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGM 243

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203
            E      +AM+                               V+E+L+ +   P +   
Sbjct: 244 FE------KAMK-------------------------------VWEQLVRD---PGA--- 260

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
                 +PN   Y  ++ G    GR  +   +     R   N    D VTY  ++  L +
Sbjct: 261 ------SPNLATYKVMLDGLCKLGRFKEAGEVWS---RMMANNHQADTVTYGILIHGLCR 311

Query: 264 AGSMDRARQVLAEMTRIGVPANR----------------------------------ITY 289
           +G +D A +V ++M + G+  +                                    TY
Sbjct: 312 SGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTY 371

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           NI+ KG      + +A ELL+++ +DA   PD V++  LI G      +  A     + R
Sbjct: 372 NIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDAR 431

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G      SY++++  F    +   AN+V+  M++D   K +   +N L+ G+CR+  +
Sbjct: 432 NSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDG-CKPNSHVYNALINGFCRVSKI 490

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC---EVKK---- 462
            +A +I   M  NG  P + TY +L +G+  A K  EA  L KE+ ER    +++     
Sbjct: 491 NDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASL 550

Query: 463 -EGVNADSDLPPPLKPDEELLDA--LADICVR---------AAFFRKALEIVACMEEHGI 510
             G+  D  +   L+  +E+LDA    D+ V          A    +A  I   M+E   
Sbjct: 551 IRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNC 610

Query: 511 PPNKTKYKKI 520
            PN   Y  +
Sbjct: 611 SPNLVTYNTL 620



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 163/390 (41%), Gaps = 36/390 (9%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL---CARASRKHLLV 113
           D + YN+++     +G+  +  + +D    F     + TYN+M K        S    L+
Sbjct: 333 DVSVYNSLIKGFCEVGRTGEAWKFWDST-GFSGIRQITTYNIMTKGLLDSGMVSEATELL 391

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
             LE   +   +    TF +L+      G    A  I++  R           ELD+  Y
Sbjct: 392 KQLEN--DASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGE-------ELDVFSY 442

Query: 174 SSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           SS       +G   D +EV++ ++ +   P             NS +Y  L+ G+    +
Sbjct: 443 SSMINRFCKDGRTHDANEVYKNMVKDGCKP-------------NSHVYNALINGFCRVSK 489

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           ++D +++   M     N   P  +TY T++  L KA     A  +  EM   G   +  T
Sbjct: 490 INDAIKIYIEM---TSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRT 546

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y  L++G C+  ++D A  +  E+ D A ++ DV+ +NILI G         A   + EM
Sbjct: 547 YASLIRGLCRDKKVDVALRIWDEILD-AGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEM 605

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
           + +  +P  ++Y TLM  F        A  ++  +L D  +K DIV +N  ++G C    
Sbjct: 606 KEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAIL-DNGLKPDIVTYNTRIKGLCSCNR 664

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGI 438
             E   ++  +   G  P V T+  L   +
Sbjct: 665 TPEGVLLLNEVLATGIMPTVITWSILVRAV 694



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 41/204 (20%)

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI--------------LID 336
           ++L  + + L  D A    R++       P V S+N L+D F+              L  
Sbjct: 88  VVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSH 147

Query: 337 DSAG-------------------------ALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
            + G                         A++ F+ +R RG+AP +++Y+TLM   A   
Sbjct: 148 GAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHD 207

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM-KENGFYPNVAT 430
           Q   A  + DEM  +  V+ D V +N L+ G  R G+ E+A ++ E++ ++ G  PN+AT
Sbjct: 208 QLDNALDLLDEM-PNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLAT 266

Query: 431 YGSLANGISLARKPGEALLLWKEI 454
           Y  + +G+    +  EA  +W  +
Sbjct: 267 YKVMLDGLCKLGRFKEAGEVWSRM 290



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 18/241 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP++  YNA++N    + K    ++++ +M   G  P ++TYN +I    +A +      
Sbjct: 471 KPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASS 530

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + +LE G    + T+ SL+        +++A  I   + +    V  ++  + +    
Sbjct: 531 LTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLC 590

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S  +      DE F   L           +  K  +PN   Y TLM G+   G +     
Sbjct: 591 SAGK-----VDEAFCIYL----------EMKEKNCSPNLVTYNTLMDGFYEIGSIDKAAS 635

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +  A+    DN   PD VTY T +  L           +L E+   G+    IT++IL++
Sbjct: 636 LWTAIL---DNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVR 692

Query: 295 G 295
            
Sbjct: 693 A 693



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +  P+   YN +++    +G   K   L+  + + G KPD++TYN  IK     +R    
Sbjct: 609 NCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEG 668

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           V +L  +L  GI   + T+  LV A + +G ++I
Sbjct: 669 VLLLNEVLATGIMPTVITWSILVRAVIKYGPIQI 702


>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 158/317 (49%), Gaps = 21/317 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    YT L+   +++GR+ +   +L  M  +EDN   PD + + T+++   +AG M  A
Sbjct: 23  PAKETYTLLLSSLISDGRLGEGPLLLQQM--EEDNVI-PDAIFFNTLLNGYCEAGKMKEA 79

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             ++ EM   G P    +YN L+KGY    Q ++A +LL+EMA D   +P+  ++N+LI 
Sbjct: 80  EALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIK 139

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            +    +   A    + MRA G+ P  +SY TL + FA   +P  A  V  EM ++  ++
Sbjct: 140 AWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEM-QNVYLR 198

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +   + +++ GY   G ++E+ R+IERMK +G  P +A +  L  G S + KP +   +
Sbjct: 199 PNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKV 258

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           +K ++        GV          KPD +    + +         +A  ++  M+E+ +
Sbjct: 259 FKLMENF------GV----------KPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDL 302

Query: 511 PPNKTKYKKIYVEMHSR 527
            P+   Y  I V+ +SR
Sbjct: 303 QPDVMAY-SILVKGYSR 318



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 128/236 (54%), Gaps = 6/236 (2%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+KGY  +G+  + +++L  M +  D  S P+  T+  ++ A     + ++AR V++
Sbjct: 98  YNTLIKGYGLDGQPEEAMKLLQEMAK--DVNSKPNDRTFNMLIKAWAHDKNPEKARNVIS 155

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   GV  + ++YN L + + +  +   A+ ++ EM  +  + P+  +Y I+I+G+I  
Sbjct: 156 MMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEM-QNVYLRPNERTYGIVINGYIAA 214

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                +L     M+  GI+PT   +  L+K ++ S +P   +KVF +++ +  VK D+  
Sbjct: 215 GQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVF-KLMENFGVKPDVQT 273

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP--GEALL 449
           + +++  +C  GL++EAK ++ RMKE    P+V  Y  L  G S   +P  GEA L
Sbjct: 274 FGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFL 329



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/446 (22%), Positives = 202/446 (45%), Gaps = 52/446 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +P    Y  +L++  + G+  +   L  QM E    PD + +N ++   C     K    
Sbjct: 22  RPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEAEA 81

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VLE + E G  L  +++ +L+  Y   G  E A  ++Q M    +DV            
Sbjct: 82  LVLE-MKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMA---KDV------------ 125

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA----PNSRIYTTLMKGYMNEGRV 229
              N   +D    +  K   +  NP     ++    A    P+   Y TL + +   G+ 
Sbjct: 126 ---NSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKP 182

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D   ++  M   ++    P+  TY  V++  + AG +D + +++  M   G+      +
Sbjct: 183 WDAENVITEM---QNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVF 239

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFN 346
           N L+KGY + ++  K  ++ + M ++  ++PDV ++ ++++ +    LID++   L    
Sbjct: 240 NHLVKGYSESMKPHKVDKVFKLM-ENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLL--- 295

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M+   + P  ++Y+ L+K ++   +P+   + F  ++ D  +K +++ +  ++ GYC +
Sbjct: 296 RMKEYDLQPDVMAYSILVKGYSRQGRPE-EGEAFLNIMIDENLKPNVITYTTVISGYCSL 354

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
             +++A R+ + M+    +PN+ T+ +L  G   AR P  A    +EI E   ++K G  
Sbjct: 355 AQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWPRRA----EEILEY--IRKAG-- 406

Query: 467 ADSDLPPPLKPDEELLDALADICVRA 492
                     PD E ++ +AD C R+
Sbjct: 407 --------FTPDLECIELVAD-CWRS 423



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 175/407 (42%), Gaps = 72/407 (17%)

Query: 14  STVVSRLAASGDDG-PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG 72
           S+  + +   G DG P E++KL   + K V          +SKP+   +N ++ A A+  
Sbjct: 96  SSYNTLIKGYGLDGQPEEAMKLLQEMAKDV----------NSKPNDRTFNMLIKAWAHDK 145

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQ 132
            P+K   +   M   G  PDV++YN + +L A+  +      V+  +  + +     T+ 
Sbjct: 146 NPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYG 205

Query: 133 SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL 192
            ++  Y+  G +                                     D+   + E++ 
Sbjct: 206 IVINGYIAAGQI-------------------------------------DESLRLIERMK 228

Query: 193 PNSINPSSEPPLLPKTFAPNSRIYTTLMKGY---MNEGRVSDTVRMLGAMRRQEDNASHP 249
            + I+P         T A    ++  L+KGY   M   +V    +++      E+    P
Sbjct: 229 MDGISP---------TIA----VFNHLVKGYSESMKPHKVDKVFKLM------ENFGVKP 269

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  T+  +++A    G +D A+ VL  M    +  + + Y+IL+KGY +Q + ++ +  L
Sbjct: 270 DVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFL 329

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
             M D+  ++P+V++Y  +I G+  +     A+  F EMR+R + P   ++ TL+  F  
Sbjct: 330 NIMIDE-NLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKE 388

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           +  P+ A ++  E +R      D+    ++ + +  +G   EA R++
Sbjct: 389 ARWPRRAEEIL-EYIRKAGFTPDLECIELVADCWRSIGADGEADRVL 434


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 180/406 (44%), Gaps = 34/406 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLVF 114
           PD   YN +++      K ++ L LFD+M + G KP + TYN +++  C +      +  
Sbjct: 399 PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKL 458

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK------IIREL 168
             E  +E G    + T+ +L+  Y+   D + A  ++  M++     C       +I  +
Sbjct: 459 YSEMPME-GFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVS-CNDYTYNVLINGI 516

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
            + D   E +G           +L +          + + F P    Y +++ G++  G 
Sbjct: 517 CMVDRVCEVDG-----------MLKS---------FMSEGFIPTMMTYNSIINGFVKAGM 556

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +     +   MR +      P+ +TYT+ +    + G  D A ++L ++ R G+  + + 
Sbjct: 557 MGSAFTVYQQMREK---GLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVA 613

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN L+ G+CQ+  +  A +LL  +  D  + P+ V YN LI G+  ++       F+  M
Sbjct: 614 YNALINGFCQEGNMSHALQLLVILLKDG-LAPNTVVYNSLITGYKNLNMMKEVSKFYESM 672

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
              GI     +YTTL+  F+       A +++ EM+    +  D   +  L  G CR G 
Sbjct: 673 IKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIP-DAFTFTALTHGLCRSGD 731

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++ AK+++E M+     PNV  Y  L NG     K  EA  L  E+
Sbjct: 732 IDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEM 777



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/491 (21%), Positives = 210/491 (42%), Gaps = 56/491 (11%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   ++A+++AC   G  +  ++LFD+M      PD   Y + I    +       + +L
Sbjct: 191 DAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRML 250

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             + E+G   C  T++++V   V  G +E A  +   MR+  + +  I+    +  Y   
Sbjct: 251 REMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLR 310

Query: 177 NEGDDDDDDEVFEKLLPNSINPS---------------------------SEPPLLPKTF 209
            E  +  +  +F++ L + I P+                           +   LLP TF
Sbjct: 311 QEVGNALN--LFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTF 368

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
                  + ++KG +N+ R  D V +   M     ++  PD  TY  ++    +A  +  
Sbjct: 369 E-----LSLVLKGLLNDRRWKDAVCLFEEMA----DSGLPDVFTYNNLIHWHCQAHKLRE 419

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +   M + GV  +  TYN LL GYC++  +D+A +L  EM  +   +P+VV+Y  L+
Sbjct: 420 ALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEG-FKPNVVTYITLM 478

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G+I   D   A    +EM+  G++    +Y  L+    +  +    + +    + +  +
Sbjct: 479 RGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFI 538

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
              ++ +N ++ G+ + G++  A  + ++M+E G  PN+ TY S  +G         AL 
Sbjct: 539 PT-MMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALK 597

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           +  +++ R                 L+PD    +AL +   +      AL+++  + + G
Sbjct: 598 MLNDVRRR----------------GLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDG 641

Query: 510 IPPNKTKYKKI 520
           + PN   Y  +
Sbjct: 642 LAPNTVVYNSL 652



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 135/260 (51%), Gaps = 13/260 (5%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y +L+ GY  +G + + V++   M  +      P+ VTY T++   +     D A
Sbjct: 434 PSINTYNSLLMGYCKKGCMDEAVKLYSEMPME---GFKPNVVTYITLMRGYIAKKDFDNA 490

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L EM + GV  N  TYN+L+ G C   ++ +   +L+    +  I P +++YN +I+
Sbjct: 491 YALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFI-PTMMTYNSIIN 549

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           GF+       A T + +MR +G+ P  I+YT+ +  +  +    +A K+ ++ +R   ++
Sbjct: 550 GFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLND-VRRRGLQ 608

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DIVA+N L+ G+C+ G +  A +++  + ++G  PN   Y SL  G        + L +
Sbjct: 609 PDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGY-------KNLNM 661

Query: 451 WKEIKERCE-VKKEGVNADS 469
            KE+ +  E + K G+ AD+
Sbjct: 662 MKEVSKFYESMIKGGIVADT 681



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 131/289 (45%), Gaps = 22/289 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN+++N     G       ++ QM E G  P+++TY   I    R     + + +
Sbjct: 539 PTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKM 598

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYS 174
           L  +   G+   +  + +L+  +   G++  A + +V  +++G      +   L +  Y 
Sbjct: 599 LNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSL-ITGYK 657

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           + N   +    + +E ++   I               ++  YTTL+ G+  +G V+  + 
Sbjct: 658 NLNMMKEVS--KFYESMIKGGI-------------VADTSTYTTLIDGFSKDGNVAFALE 702

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +      PD  T+T +   L ++G +D A+++L EM R+ V  N   YN+L+ 
Sbjct: 703 LYSEMMAK---GYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLIN 759

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID-GFILIDDSAGAL 342
           GY +  ++ +A  L  EM  +  I+PD  +Y+IL+   F+  D+ A  L
Sbjct: 760 GYLRDCKLQEAFRLHDEML-NMGIQPDDTTYDILVSKKFLEADNCADVL 807



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/239 (19%), Positives = 91/239 (38%), Gaps = 53/239 (22%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD  AYNA++N     G     LQL   + + G  P+ + YN +I      +    +  
Sbjct: 608 QPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSK 667

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             E +++ GI    +T+ +L+  +   G++  A                      LE YS
Sbjct: 668 FYESMIKGGIVADTSTYTTLIDGFSKDGNVAFA----------------------LELYS 705

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                        ++ K + P++  +T L  G    G +    +
Sbjct: 706 E----------------------------MMAKGYIPDAFTFTALTHGLCRSGDIDGAKK 737

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +L  MRR +     P+   Y  +++  ++   +  A ++  EM  +G+  +  TY+IL+
Sbjct: 738 LLEEMRRLD---VRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 20/192 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL  F EMR RG       +  LM A       + A ++FDEM     +  D   + + +
Sbjct: 176 ALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEM-PGAEIDPDQRVYALAI 234

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE- 459
              C++G    A R++  MKE GF     TY ++ + +    +  EAL +  E+++  + 
Sbjct: 235 TALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKK 294

Query: 460 --------------VKKEGVNADSDLPPPLK----PDEELLDALADICVRAAFFRKALEI 501
                         +++E  NA +     LK    P + +   L   C +    +KA E+
Sbjct: 295 MDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYEL 354

Query: 502 VACMEEHGIPPN 513
              M   G+ P+
Sbjct: 355 CRQMTGQGLLPS 366



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+  GY+P    ++ +   L  SGD DG  +       +++ +R+        D +P+  
Sbjct: 707 MMAKGYIPDAFTFTALTHGLCRSGDIDGAKK-------LLEEMRRL-------DVRPNVF 752

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
            YN ++N      K ++  +L D+M   G +PD  TY++++
Sbjct: 753 IYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 189/432 (43%), Gaps = 25/432 (5%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +PD  +YNAVL       +     +L  +M   G  P+V T+N +I    R      + 
Sbjct: 209 CEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVH 268

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------REGRRDV 161
             L ++ E G T  +  + +++      G  E+A  I+  M                + +
Sbjct: 269 EALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGL 328

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNS 213
           C   R  + ED  +E   +D   D+V   +L +    +            +L     P+ 
Sbjct: 329 CSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDV 388

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT++ G+  EG V + V +L   +        P+ ++YT V+  L +A     A+++
Sbjct: 389 ITYTTVINGFCKEGLVDEAVMLL---KNMSACGCKPNTISYTIVLKGLCRAERWVDAQEL 445

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           ++ M + G   N +T+N L+   C++  +++A ELL++M  +    PD++SY+ +IDG  
Sbjct: 446 ISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNG-CSPDLISYSTVIDGLG 504

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  AL   N M  +GI P  I Y+++  A +   +     ++FD  ++D  V+ D 
Sbjct: 505 KAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDS-IQDATVRSDA 563

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             +N ++   C+    + A      M  NG  PN +TY  L  G++      EA  L  E
Sbjct: 564 ALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSE 623

Query: 454 IKERCEVKKEGV 465
           +  R  V+K  V
Sbjct: 624 LCSRRAVRKHLV 635



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 124/527 (23%), Positives = 223/527 (42%), Gaps = 96/527 (18%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D+   N V++A    G   + ++L  ++  FG +PD+++YN ++K    A R   +  ++
Sbjct: 177 DSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELM 236

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             ++ +G    + TF +L+A     G  E     +  M E                    
Sbjct: 237 VEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPE-------------------- 276

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR--VSDTVR 234
                                             P+ R+Y T++ G   +G   V++ + 
Sbjct: 277 ------------------------------HGCTPDLRMYATIIDGICKDGHHEVANDI- 305

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               + R       P+ V Y TV+  L  A   + A  +LAEM +   P + +T+NIL+ 
Sbjct: 306 ----LSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVD 361

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRAR 351
            +CQ   +D+  ELL +M +   I PDV++Y  +I+GF    L+D+   A+     M A 
Sbjct: 362 FFCQNGLVDRVIELLEQMLEHGCI-PDVITYTTVINGFCKEGLVDE---AVMLLKNMSAC 417

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G  P  ISYT ++K    + +   A ++   M++   +  + V +N L+   C+ GLVE+
Sbjct: 418 GCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLP-NPVTFNTLINFMCKKGLVEQ 476

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD--S 469
           A  ++++M  NG  P++ +Y ++ +G+  A K  EAL L   +  +       + +   S
Sbjct: 477 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMAS 536

Query: 470 DLPPPLKPDE--ELLDALADICVR--AAFFR-------------KALEIVACMEEHGIPP 512
            L    + D+  ++ D++ D  VR  AA +              +A++  A M  +G  P
Sbjct: 537 ALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 596

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQARQD-------RRRERKRAAEAF 552
           N++ Y  +      R   S+   +  QD       RR  RK     F
Sbjct: 597 NESTYTILI-----RGLASEGLVREAQDLLSELCSRRAVRKHLVRHF 638



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 134/314 (42%), Gaps = 29/314 (9%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDR 269
           PN+  Y  +++     G ++D + +L  M  +   A+ P  HV    ++ A  + G    
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHV----ILEAACRGGGFRS 161

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A + L  +   G   +    N+++   C+Q  +D+  ELLR++      EPD+VSYN ++
Sbjct: 162 AVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFG-CEPDIVSYNAVL 220

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR- 388
            G  +            EM   G  P   ++ TL+   A   +  L  +V + + + P  
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLI---AYLCRNGLFEQVHEALSQMPEH 277

Query: 389 -VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               D+  +  +++G C+ G  E A  I+ RM   G  PNV  Y ++  G+  A +  EA
Sbjct: 278 GCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEA 337

Query: 448 L-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
             LL +  +E C               PL  D+   + L D   +     + +E++  M 
Sbjct: 338 EDLLAEMFQEDC---------------PL--DDVTFNILVDFFCQNGLVDRVIELLEQML 380

Query: 507 EHGIPPNKTKYKKI 520
           EHG  P+   Y  +
Sbjct: 381 EHGCIPDVITYTTV 394



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 140/346 (40%), Gaps = 46/346 (13%)

Query: 5   GYLPHVKAWSTVVSRLAAS--------------GDDGPVESVKLFDVV--------VKRV 42
           G  P+V  ++TV+  L ++               +D P++ V    +V        V RV
Sbjct: 313 GLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRV 372

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
            +  +  +     PD   Y  V+N     G   + + L   M   G KP+ ++Y +++K 
Sbjct: 373 IELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKG 432

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDV 161
             RA R      ++  +++ G      TF +L+      G +E A E + Q +  G    
Sbjct: 433 LCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSP- 491

Query: 162 CKIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
                  DL  YS+  +  G     +E  E LL   IN         K   PN+ IY+++
Sbjct: 492 -------DLISYSTVIDGLGKAGKTEEALE-LLNVMIN---------KGITPNTIIYSSM 534

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
                 EGR    ++M  ++   +D     D   Y  V+S+L K    DRA    A M  
Sbjct: 535 ASALSREGRTDKIIQMFDSI---QDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 591

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            G   N  TY IL++G   +  + +A++LL E+     +   +V +
Sbjct: 592 NGCMPNESTYTILIRGLASEGLVREAQDLLSELCSRRAVRKHLVRH 637



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 115/268 (42%), Gaps = 28/268 (10%)

Query: 255 TTVVSALVKAG-SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           + ++ +L  AG + D AR     +   G  A  + YN ++ GYC+  Q+  A+ L   + 
Sbjct: 48  SALIRSLCAAGRTADAARA----LDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV- 102

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
               + P+  +Y  ++         A ALT  +EM  RG A T      +++A       
Sbjct: 103 ---PVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGF 159

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           + A +   ++L      +D    N++V   C  G V+E   ++ ++   G  P++ +Y +
Sbjct: 160 RSAVRAL-QVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNA 218

Query: 434 LANGISLARKPGEALLLWKEIKE-RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           +  G+ +A++       W +++E   E+ + G       PP +     L+  L     R 
Sbjct: 219 VLKGLCMAKR-------WDDVEELMVEMVRVGC------PPNVATFNTLIAYLC----RN 261

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
             F +  E ++ M EHG  P+   Y  I
Sbjct: 262 GLFEQVHEALSQMPEHGCTPDLRMYATI 289


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 191/457 (41%), Gaps = 77/457 (16%)

Query: 5   GYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVV----KRVRKFSD 47
           G+LP VK +  +++     G             + G   S+++F+ ++    K   +   
Sbjct: 267 GFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEA 326

Query: 48  PDIV-----SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
            D V     S  +PD A YN ++N   + GK ++  +L +     G  P+  +Y  +I  
Sbjct: 327 ADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHA 386

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
            ++         +L  + E G TL +  + +LV   V  G++++A T+   M E      
Sbjct: 387 FSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMME------ 440

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
                                                       +   P++ IY  LM G
Sbjct: 441 --------------------------------------------RGILPDANIYNVLMSG 456

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              +GR     ++L  M    D    PD     T+V   ++ G++D A+++       G+
Sbjct: 457 LCKKGRFPAAKQLLVEML---DQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGI 513

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             + +  N ++KGYC+   ++ A    + M +     PD  +Y+ +IDG++  +D  GAL
Sbjct: 514 DTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVH-SPDEFTYSTIIDGYVKQNDLRGAL 572

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F  M  +   P  +++T+L+  F  +     A KVF+EM R    + ++V + +L+  
Sbjct: 573 RMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEM-RSFGFEPNVVTYTILIGY 631

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           +C+ G + +A    E+M  N   PN AT+  L NG++
Sbjct: 632 FCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLT 668



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 179/436 (41%), Gaps = 59/436 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN +++     G  ++   LF ++   G  P V TY  MI    +  +   +  +
Sbjct: 235 PNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKL 294

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFG-DLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           L  + E G+ + +  F  ++ A    G ++E A+ +   +  G    C    E D+  Y+
Sbjct: 295 LVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESG----C----EPDMATYN 346

Query: 175 SENEGDDDDDD-EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           +   G          E+LL ++I          +   PN   YT L+  +   G   + V
Sbjct: 347 TLINGSCSKGKVREAEELLEHAIR---------RGLFPNKFSYTPLIHAFSKNG---EYV 394

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R    +    +     D + Y  +V  LV AG +D A  V  +M   G+  +   YN+L+
Sbjct: 395 RASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLM 454

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C++ +   AK+LL EM D   + PD      L+DGFI   +   A   F     RGI
Sbjct: 455 SGLCKKGRFPAAKQLLVEMLDQ-NVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGI 513

Query: 354 -----------------------------------APTKISYTTLMKAFALSSQPKLANK 378
                                              +P + +Y+T++  +   +  + A +
Sbjct: 514 DTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALR 573

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F  ML+    K ++V +  L+ G+CR G +  A+++ E M+  GF PNV TY  L    
Sbjct: 574 MFGLMLKKT-CKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYF 632

Query: 439 SLARKPGEALLLWKEI 454
               K  +A   ++++
Sbjct: 633 CKEGKLTKACFFFEQM 648



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 115/515 (22%), Positives = 213/515 (41%), Gaps = 50/515 (9%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           +P  +A S V+S  A SG     E+++L++ V+           V +  PD  A N++LN
Sbjct: 128 IPTCEALSFVISAYAGSGL--VKEALELYNTVID----------VHNCVPDVFACNSLLN 175

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
              + GK +   +++D+M +     D  T  ++ K   +  +      ++E+    G   
Sbjct: 176 LLVHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVP 235

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
            +  + +L+  Y   GD+E A  + + ++ +G     K    +        N        
Sbjct: 236 NIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMI-------NAFCKKGKF 288

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           E  +KLL           +  +  A + +I+  ++      G     +    A+R   ++
Sbjct: 289 EAVDKLLVE---------MKERGLAVSLQIFNGIIDARFKHGC---EIEAADAVRWMIES 336

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD  TY T+++     G +  A ++L    R G+  N+ +Y  L+  + +  +  +A
Sbjct: 337 GCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRA 396

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            ELL EM++      D+++Y  L+ G ++  +   ALT  ++M  RGI P    Y  LM 
Sbjct: 397 SELLIEMSERGHT-LDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMS 455

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                 +   A ++  EML D  V  D      LV+G+ R G ++EAK++ +   E G  
Sbjct: 456 GLCKKGRFPAAKQLLVEML-DQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGID 514

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
            +V    ++  G        +ALL +K +         GV++         PDE     +
Sbjct: 515 TSVVECNAMIKGYCKYGMMNDALLCFKRM-------FNGVHS---------PDEFTYSTI 558

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            D  V+    R AL +   M +    PN   +  +
Sbjct: 559 IDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSL 593


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 188/403 (46%), Gaps = 25/403 (6%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASR 108
           +++   PD  AYNA++      G+     +L  +M     +PD  TYN +I+ LC R   
Sbjct: 118 VLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRT 174

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
            + L  VL+ +L       + T+  L+ A       + A  ++  MR+  +     I   
Sbjct: 175 ANALA-VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRD--KGCTPDIVTY 231

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++       EG  DD  E F K LP+                PN+  Y  ++KG     R
Sbjct: 232 NVVVNGICQEGRVDDAIE-FLKNLPS------------YGCEPNTVSYNIVLKGLCTAER 278

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
             D   ++G M ++      P+ VT+  ++S L + G ++ A +VL ++ + G   N ++
Sbjct: 279 WEDAEELMGEMGQK---GCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 335

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN LL  +C+Q ++DKA   L  M       PD+VSYN L+       +   A+   +++
Sbjct: 336 YNPLLHAFCKQKKMDKAMAFLDLMVSRG-CYPDIVSYNTLLTALCRSGEVDVAVELLHQL 394

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
           + +G AP  ISY T++     + + K A ++ +EM+    ++ DI+ ++ +  G CR   
Sbjct: 395 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV-SKGLQPDIITYSTIAAGLCREDR 453

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           +E+A R   ++++ G  PN   Y ++  G+   R+   A+ L+
Sbjct: 454 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLF 496



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 182/433 (42%), Gaps = 57/433 (13%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           + ++VA Y G G L+ A          RR V ++  E D   Y++   G           
Sbjct: 129 YNAMVAGYCGAGQLDAA----------RRLVAEMPVEPDAYTYNTLIRG------LCGRG 172

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
              N++    E  +L +   P+   YT L++           +++L  MR   D    PD
Sbjct: 173 RTANALAVLDE--MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR---DKGCTPD 227

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY  VV+ + + G +D A + L  +   G   N ++YNI+LKG C   + + A+EL+ 
Sbjct: 228 IVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMG 287

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           EM       P+VV++N+LI           AL    ++   G  P  +SY  L+ AF   
Sbjct: 288 EMGQKG-CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQ 346

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
            +   A    D M+       DIV++N L+   CR G V+ A  ++ ++K+ G  P + +
Sbjct: 347 KKMDKAMAFLDLMVSRG-CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLIS 405

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           Y ++ +G++ A K  EAL L  E+  +                 L+PD      +A    
Sbjct: 406 YNTVIDGLTKAGKTKEALELLNEMVSK----------------GLQPDIITYSTIAAGLC 449

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAE 550
           R      A+     +++ GI PN   Y  I + +                +RRE   A +
Sbjct: 450 REDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLC---------------KRRETHSAID 494

Query: 551 AFKFWLG---LPN 560
            F + +G   +PN
Sbjct: 495 LFAYMIGNGCMPN 507



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 138/301 (45%), Gaps = 33/301 (10%)

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           ++  +  G + + +R++G+ RR       PD  T   ++  L  +G    AR+VLA    
Sbjct: 72  LRSLVRRGELDEALRLVGSARR-------PDAGTCAALIKKLSASGRTAEARRVLA---- 120

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
                + + YN ++ GYC   Q+D A+ L+ EM     +EPD  +YN LI G      +A
Sbjct: 121 -ACGPDVMAYNAMVAGYCGAGQLDAARRLVAEM----PVEPDAYTYNTLIRGLCGRGRTA 175

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            AL   +EM  R   P  ++YT L++A    S  K A K+ DEM RD     DIV +N++
Sbjct: 176 NALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM-RDKGCTPDIVTYNVV 234

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           V G C+ G V++A   ++ +   G  PN  +Y  +  G+  A +       W++ +E   
Sbjct: 235 VNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER-------WEDAEEL-- 285

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
               G       PP +     L+  L     R      ALE++  + ++G  PN   Y  
Sbjct: 286 ---MGEMGQKGCPPNVVTFNMLISFLC----RKGLVEPALEVLEQIPKYGCTPNSLSYNP 338

Query: 520 I 520
           +
Sbjct: 339 L 339



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 167/397 (42%), Gaps = 38/397 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR   +P V  ++ ++   A     G  +++KL D   +   K   PDIV+        
Sbjct: 184 MLRRRCVPDVVTYTILLE--ATCKRSGYKQAMKLLD---EMRDKGCTPDIVT-------- 230

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N     G+    ++    +  +G +P+ ++YN+++K    A R        E + 
Sbjct: 231 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE---DAEELMG 287

Query: 121 EMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           EMG   C   + TF  L++     G +E A  +++ + +       +     L  +  + 
Sbjct: 288 EMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQK 347

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +    D    F  L            ++ +   P+   Y TL+      G V   V +L 
Sbjct: 348 K---MDKAMAFLDL------------MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLH 392

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            ++   D    P  ++Y TV+  L KAG    A ++L EM   G+  + ITY+ +  G C
Sbjct: 393 QLK---DKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLC 449

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           ++ +I+ A     ++  D  I P+ V YN +I G     ++  A+  F  M   G  P +
Sbjct: 450 REDRIEDAIRAFGKV-QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNE 508

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            +YT L++  A     K A  + DE+     V+  ++
Sbjct: 509 STYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLI 545



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/324 (19%), Positives = 122/324 (37%), Gaps = 66/324 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V  ++ ++S L   G   P   V      ++++ K+          P++ +
Sbjct: 289 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEV------LEQIPKYG-------CTPNSLS 335

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+A     K  K +   D M   G  PD+++YN ++    R+    + V +L ++ 
Sbjct: 336 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 395

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + ++ +++      G  + A  ++  M                          
Sbjct: 396 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNEM-------------------------- 429

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   + K   P+   Y+T+  G   E R+ D +R  G   
Sbjct: 430 ------------------------VSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG--- 462

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           + +D    P+ V Y  ++  L K      A  + A M   G   N  TY IL++G   + 
Sbjct: 463 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 522

Query: 301 QIDKAKELLREMADDAKIEPDVVS 324
            I +A++LL E+     +   +++
Sbjct: 523 LIKEARDLLDELCSRGVVRKSLIN 546


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 171/383 (44%), Gaps = 20/383 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   YN++++A    G   +  +    + E G +PD+ TYN +I    R  + H    +L
Sbjct: 309 NVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELL 368

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E  ++ G++    ++  L+  Y   G    A  +   M E           LDL  Y + 
Sbjct: 369 EHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGH-------PLDLVAYGAL 421

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             G     +          +  +    ++ +   P++ +Y  LM G   +GR+S    +L
Sbjct: 422 VHGLVAAGEV--------DVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLL 473

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M  Q  N S  D     T+V   ++ G +D A+++       G+    + YN ++KGY
Sbjct: 474 VEMLHQ--NLS-LDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGY 530

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C+   ++ A   ++ M D     PD  +Y+ +IDG++  +D   AL  F +M  +   P 
Sbjct: 531 CKFGMMNDALTCVQRMKDGDH-SPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPN 589

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++YT+L+  F  +     A K F+EM R   +K ++V + +L+  +C+ G + +A    
Sbjct: 590 VVTYTSLINGFCRTGDSSRAEKTFEEM-RSSGLKPNVVTYTILIGCFCKEGKISKACSFF 648

Query: 417 ERMKENGFYPNVATYGSLANGIS 439
           E M  N   PN  T+  L NG++
Sbjct: 649 ELMLLNRCIPNDVTFNYLINGLT 671



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 184/417 (44%), Gaps = 61/417 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+   YN +++     G  ++   LF ++   G  P   TY +MI  LC + + K +   
Sbjct: 238 PNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGL 297

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFG-DLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           ++E + E G+ + +  + S+V A +  G  +E+ +T+      G    C    E D+  Y
Sbjct: 298 LVE-MKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENG----C----EPDITTY 348

Query: 174 SSENEGDDDDDD-EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           ++   G   D      E+LL ++I          +  +PN   YT L+  Y  +G+    
Sbjct: 349 NTLISGSCRDGKVHEAEELLEHAI---------KRGLSPNKLSYTPLIHVYCKQGKCLRA 399

Query: 233 VRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             +   M  +     HP D V Y  +V  LV AG +D A  V  +M   GV  +   YN+
Sbjct: 400 FDLFIGMTEK----GHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNV 455

Query: 292 LLKGYCQQLQIDKAKELLREMA------------------------DDAK---------- 317
           L+ G C++ ++  AK LL EM                         D+AK          
Sbjct: 456 LMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKG 515

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           ++P VV YN +I G+        ALT    M+    +P + +Y+T++  +   +    A 
Sbjct: 516 MDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNAL 575

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           K+F +M++  + K ++V +  L+ G+CR G    A++  E M+ +G  PNV TY  L
Sbjct: 576 KLFGQMVKQ-KCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTIL 631



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/470 (20%), Positives = 195/470 (41%), Gaps = 65/470 (13%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           +G  P +  ++T++S    S  DG V E+ +L +  +KR              P+  +Y 
Sbjct: 339 NGCEPDITTYNTLIS---GSCRDGKVHEAEELLEHAIKR-----------GLSPNKLSYT 384

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            +++     GK  +   LF  M E G   D++ Y  ++     A    + + V ++++E 
Sbjct: 385 PLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVER 444

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN----- 177
           G+      +  L+      G L  A+ ++  M         + + L L+ + S       
Sbjct: 445 GVLPDANVYNVLMNGLCKKGRLSAAKLLLVEM---------LHQNLSLDAFVSATLVDGF 495

Query: 178 --EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D+  ++FE  +   ++P                 Y  ++KGY   G ++D    
Sbjct: 496 IRHGKLDEAKKLFELTIAKGMDPGVVG-------------YNAMIKGYCKFGMMNDA--- 539

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  ++R +D    PD  TY+T++   VK   +  A ++  +M +     N +TY  L+ G
Sbjct: 540 LTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLING 599

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+     +A++   EM     ++P+VV+Y ILI  F      + A +FF  M      P
Sbjct: 600 FCRTGDSSRAEKTFEEMRSSG-LKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIP 658

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-------------IVAWNMLVEG 402
             +++  L+     +    ++NK  + +     + +D             + A+N ++  
Sbjct: 659 NDVTFNYLINGLTNNLATAVSNKANESLEIKASLMMDFFRTMISDGWEQRVAAYNSVLIC 718

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
            C   +V  A ++ ++M   G +P+  ++ +L  G+ L  +  E    WK
Sbjct: 719 LCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGLCLEGRSKE----WK 764



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 201/498 (40%), Gaps = 59/498 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD  A NA+LNA     K +   +++++M +     D  +  +M++ LC     +     
Sbjct: 168 PDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEGRKL 227

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY- 173
           + +R    G    +  + +LV  Y   GD+E A  +               +EL ++ + 
Sbjct: 228 INDR-WGKGCIPNIVFYNTLVDGYWKRGDVERANGL--------------FKELKMKGFL 272

Query: 174 -SSENEGDDDDDDEVFEKLLPNSINPSSEPPLL----PKTFAPNSRIYTTLMKGYMNEG- 227
            ++E  G       +    L    N  +   LL     +    N ++Y +++   +  G 
Sbjct: 273 PTTETYG-------IMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGC 325

Query: 228 --RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
              V  T+R +       +N   PD  TY T++S   + G +  A ++L    + G+  N
Sbjct: 326 KIEVGKTLRWI------TENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPN 379

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEP-DVVSYNILIDGFILIDDSAGALTF 344
           +++Y  L+  YC+Q +  +A +L   M +  K  P D+V+Y  L+ G +   +   ALT 
Sbjct: 380 KLSYTPLIHVYCKQGKCLRAFDLFIGMTE--KGHPLDLVAYGALVHGLVAAGEVDVALTV 437

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
            ++M  RG+ P    Y  LM       +   A  +  EML    + +D      LV+G+ 
Sbjct: 438 RDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQ-NLSLDAFVSATLVDGFI 496

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG 464
           R G ++EAK++ E     G  P V  Y ++  G        +AL   + +K         
Sbjct: 497 RHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMK--------- 547

Query: 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
              D D      PDE     + D  V+      AL++   M +    PN   Y  + +  
Sbjct: 548 ---DGDHS----PDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSL-ING 599

Query: 525 HSRMFTSKHASQARQDRR 542
             R   S  A +  ++ R
Sbjct: 600 FCRTGDSSRAEKTFEEMR 617



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 115/289 (39%), Gaps = 24/289 (8%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  + ++++  L +         +L  M    +   R   + ++  Y     +++A EL 
Sbjct: 98  DGFSCSSLLKLLARCRVFVEVENLLETMKCKDLAPTREALSFVVGAYVDSGLVNRALELY 157

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
               D     PDV++ N L++  I       A   + EM  R       S   +++    
Sbjct: 158 HIAYDIHNYLPDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCK 217

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             + +   K+ ++      +  +IV +N LV+GY + G VE A  + + +K  GF P   
Sbjct: 218 ERKVEEGRKLINDRWGKGCIP-NIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTE 276

Query: 430 TYGSLANGIS--LARKPGEALLLWKEIKER-CEVKKEGVNA--DSDLPPPLK-------- 476
           TYG + NG+      K  + LL+  E+KER  +V  +  N+  D+ +    K        
Sbjct: 277 TYGIMINGLCKKCNFKAVDGLLV--EMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLR 334

Query: 477 --------PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                   PD    + L     R     +A E++    + G+ PNK  Y
Sbjct: 335 WITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSY 383


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 5/242 (2%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y+TLM G  NEGR+ + V +L  M+ +    + P+ V +  ++SAL K G + RA +++ 
Sbjct: 213 YSTLMHGLCNEGRIDEAVSLLDEMQVE---GTFPNPVAFNVLISALCKKGDLSRASKLVD 269

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   N +TYN L+ G C + ++DKA  LL  M  + K  P+ +++  L+DGF+  
Sbjct: 270 NMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVAN-KCVPNDITFGTLVDGFVKH 328

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             +   +     +  +G    + SY++L+       + +   +++ EM+ +   K + + 
Sbjct: 329 GRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMV-EKGCKPNTIV 387

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++G CR G  +EAK  +  MK  G  PN  TY SL  G   A    +A+L+WKE+ 
Sbjct: 388 YSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMT 447

Query: 456 ER 457
           + 
Sbjct: 448 DN 449



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 191/459 (41%), Gaps = 68/459 (14%)

Query: 10  VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACA 69
           VK+++TV++ +   G          FD+ ++      D +  S+ +P+  ++N V+ A  
Sbjct: 136 VKSFNTVLNVVIQEG---------CFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALC 186

Query: 70  NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT 129
            +G   + +++F  M +     D  TY+ ++       R    V +L+ +   G      
Sbjct: 187 RVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPV 246

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMR-----EGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            F  L++A    GDL  A  +V  M              ++  L L+       G  D  
Sbjct: 247 AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLK-------GKLDKA 299

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ-- 242
             +  +++ N                PN   + TL+ G++  GR  D VR+L ++  +  
Sbjct: 300 MSLLNRMVANKC-------------VPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGY 346

Query: 243 ----------------EDNASH--------------PDHVTYTTVVSALVKAGSMDRARQ 272
                           E    H              P+ + Y+ ++  L + G  D A++
Sbjct: 347 RGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKE 406

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            L EM   G   N  TY+ L+ GY +   I KA  + +EM D+       V Y+ILI+G 
Sbjct: 407 YLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDN-DCNHHEVCYSILINGL 465

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKV 391
                   AL  + +M +RGI    ++Y++++  F  +   +   K+F++ML  +P+++ 
Sbjct: 466 CKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQP 525

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           D+V +N+L+  +C    V  A  I+  M + G  P+  T
Sbjct: 526 DVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFIT 564



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 18/273 (6%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P+ +++  V+ AL + G++D+A +V   M+     A+  TY+ L+ G C + +ID+A  
Sbjct: 172 QPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVS 231

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           LL EM  +    P+ V++N+LI       D + A    + M  +G  P +++Y +L+   
Sbjct: 232 LLDEMQVEGTF-PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGL 290

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            L  +   A  + + M+ +  V  DI  +  LV+G+ + G   +  R++  ++E G+  N
Sbjct: 291 CLKGKLDKAMSLLNRMVANKCVPNDI-TFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGN 349

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
             +Y SL +G+    K    + LWKE+ E+                  KP+  +  AL D
Sbjct: 350 EFSYSSLISGLFKEGKGEHGMQLWKEMVEK----------------GCKPNTIVYSALID 393

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R     +A E +  M+  G  PN   Y  +
Sbjct: 394 GLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSL 426



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 152/364 (41%), Gaps = 32/364 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+  A++ ++S L   GD             + R  K  D   +    P+   YN++
Sbjct: 240 GTFPNPVAFNVLISALCKKGD-------------LSRASKLVDNMFLKGCVPNEVTYNSL 286

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K + L ++M      P+ +T+  ++    +  R    V VL  + E G 
Sbjct: 287 VHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGY 346

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                ++ SL++     G  E    + + M E       I+    ++    E +      
Sbjct: 347 RGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK-----P 401

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
           DE  E L+           +  K   PNS  Y++LM GY   G +   + +   M    D
Sbjct: 402 DEAKEYLIE----------MKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEM---TD 448

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N  +   V Y+ +++ L K G +  A  V  +M   G+  + + Y+ ++ G+C    +++
Sbjct: 449 NDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQ 508

Query: 305 AKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
             +L  +M   + K++PDVV+YNIL++ F   +  + A+   N M  +G  P  I+    
Sbjct: 509 GMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIF 568

Query: 364 MKAF 367
           +K  
Sbjct: 569 LKTL 572



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADD---AKIEPDVVSYNILIDGFILIDDSAGALTF 344
           ++N +L    Q+   D A E    + D    + I+P+ +S+N++I     + +   A+  
Sbjct: 138 SFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEV 197

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F  M  R       +Y+TLM       +   A  + DEM  +     + VA+N+L+   C
Sbjct: 198 FRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFP-NPVAFNVLISALC 256

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKE 463
           + G +  A ++++ M   G  PN  TY SL +G+ L  K  +A+ LL + +  +C     
Sbjct: 257 KKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCV---- 312

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                        P++     L D  V+       + ++  +EE G   N+  Y  +
Sbjct: 313 -------------PNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSL 356


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 237/567 (41%), Gaps = 93/567 (16%)

Query: 8   PHVKAWSTVV-SRLAASGDDGPVESVKLFDVV--VKRVRKFSDPDIVSDSKPDTAAYNAV 64
           P   A ++VV + L+   D G ++     D V  V RVR+   P       P+T   N +
Sbjct: 116 PRRSALASVVDTLLSVLADRGLLD-----DAVRAVARVRELRVP-------PNTRTCNHI 163

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           L   A     +   +LF+Q+      P+V T+N++I    +         +  R+ EMG 
Sbjct: 164 LLRLARDRSGRLVRRLFEQL----PAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGC 219

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + TF SL+  Y   G+L+  E +V+ MR   R  CK     D+  Y++         
Sbjct: 220 LPDVVTFNSLIDGYGKCGELDEVEQLVEEMR---RSGCKA----DVVTYNAL-------- 264

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
              F K             +  +    N   ++T +  +  EG V + +++   MR +  
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVR-- 322

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
                +  TYT ++    KAG +D A  +L EM R GVP N +TY +L+ G C++ ++ +
Sbjct: 323 -GMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAE 381

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR------------- 351
           A+++LR M + A +  + + Y  LI G  +  +S  AL   +EM+ +             
Sbjct: 382 AEDVLR-MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440

Query: 352 ----------------------GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
                                 G+ P  I YTT+M A   S +   A  +  ++L D   
Sbjct: 441 QGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKIL-DSGF 499

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           + +++ +  L++G C+ G ++EA     +M++ G  PNV  Y +L +G+       EA+ 
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 450 LWKEIKERCE--------------VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           L+ E+  +                +K+  ++    L   +      LD     C  + F 
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619

Query: 496 R-----KALEIVACMEEHGIPPNKTKY 517
                 +A E+ + M  HGI P++  Y
Sbjct: 620 NLNMMPEAREVFSEMIGHGIAPDRAVY 646



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 210/476 (44%), Gaps = 48/476 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G LP V  +++++      G+   VE +      V+ +R+       S  K D   YNA+
Sbjct: 218 GCLPDVVTFNSLIDGYGKCGELDEVEQL------VEEMRR-------SGCKADVVTYNAL 264

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARA-SRKHLLVFVLERILEM 122
           +N     G+ +     F  M   G   +V+T++  +   C     R+ + +F   R+   
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRV--R 322

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGR-----------RDVCKIIRELDL 170
           G+ L   T+  L+      G L+ A  ++  M R+G              +CK  +  + 
Sbjct: 323 GMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEA 382

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNS--INPSSEPPL------LPKTFAPNSRIYTTLMKG 222
           ED     E      +E+    L +   +N +SE  L        K    +  +Y  L++G
Sbjct: 383 EDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQG 442

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
             N  ++ +   +L  M   +++   P+++ YTT++ A  K+G +  A  +L ++   G 
Sbjct: 443 LCNVHKLDEAKSLLTKM---DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGF 499

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N ITY  L+ G C+   ID+A     +M  D  ++P+V +Y  L+DG         A+
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKM-RDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             FNEM  +G++  K+ YT L+  +        A  +  +M+ D  +++D+  +   + G
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMI-DSGLQLDLFCYTCFISG 617

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG---EALLLWKEIK 455
           +C + ++ EA+ +   M  +G  P+ A Y  L   IS  +K G   EA+ L  E++
Sbjct: 618 FCNLNMMPEAREVFSEMIGHGIAPDRAVYNCL---ISKYQKLGNLEEAISLQDEME 670



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 149/328 (45%), Gaps = 25/328 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN   +  ++     EG +++   +     R ++    PD VT+ +++    K G +D 
Sbjct: 185 APNVFTFNIVIDFLCKEGELAEARSLFS---RMKEMGCLPDVVTFNSLIDGYGKCGELDE 241

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             Q++ EM R G  A+ +TYN L+  +C+  +++ A      M  +  +  +VV+++  +
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREG-VMANVVTFSTFV 300

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           D F        A+  F +MR RG+A  + +YT L+     + +   A  + DEM+R   V
Sbjct: 301 DAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG-V 359

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
            +++V + +LV+G C+   V EA+ ++  M++ G   N   Y +L +G  + +   +AL 
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG 419

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L  E+K +                 L+ D  L  AL           +A  ++  M+E G
Sbjct: 420 LLSEMKNK----------------GLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 510 IPPNKTKYKKIYVEMHSRMFTSKHASQA 537
           + PN      IY  M    F S    +A
Sbjct: 464 LEPNYI----IYTTMMDACFKSGKVPEA 487



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 166/413 (40%), Gaps = 53/413 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M R G + +V  +ST V    A   +G V E++KLF  +  RVR  +  +          
Sbjct: 284 MKREGVMANVVTFSTFVD---AFCKEGLVREAMKLFAQM--RVRGMALNEFT-------- 330

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y  +++     G+    + L D+M   G   +V+TY V++    +  +      VL  +
Sbjct: 331 -YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+      + +L+  +    + E A  ++  M+           ELD+  Y +  +G
Sbjct: 390 EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL-------ELDISLYGALIQG 442

Query: 180 -----DDDDDDEVFEKLLPNSINP--------------SSEPP--------LLPKTFAPN 212
                  D+   +  K+  + + P              S + P        +L   F PN
Sbjct: 443 LCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN 502

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  L+ G    G + + +     MR   D    P+   YT +V  L K G ++ A Q
Sbjct: 503 VITYCALIDGLCKAGSIDEAISHFNKMR---DLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +  EM   G+  +++ Y  LL GY +Q  +  A  L  +M D   ++ D+  Y   I GF
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG-LQLDLFCYTCFISGF 618

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             ++    A   F+EM   GIAP +  Y  L+  +      + A  + DEM R
Sbjct: 619 CNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 121/275 (44%), Gaps = 21/275 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D + Y A++    N+ K  +   L  +M E G +P+ + Y  M+  C ++ +    + +L
Sbjct: 432 DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAML 491

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           ++IL+ G    + T+ +L+      G ++ A +    MR+   D        +++ Y++ 
Sbjct: 492 QKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDP-------NVQAYTAL 544

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +G   +        L  ++   +E  ++ K  + +  +YT L+ GY+ +G + D   + 
Sbjct: 545 VDGLCKNG------CLNEAVQLFNE--MVHKGMSLDKVVYTALLDGYLKQGNLHDAFALK 596

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M    D+    D   YT  +S       M  AR+V +EM   G+  +R  YN L+  Y
Sbjct: 597 AKMI---DSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKY 653

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +   +++A  L  EM    ++ P     +   DG
Sbjct: 654 QKLGNLEEAISLQDEM---ERVLPSCTDSDTATDG 685


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 117/486 (24%), Positives = 214/486 (44%), Gaps = 63/486 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R GY P V   + ++           + +V     V++ + KF  PD+         A
Sbjct: 111 MVRKGYNPDVILCTKLIKGFFT------LRNVPKAVRVMEILEKFGQPDVF--------A 156

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YNA++N    + +     ++ D+M      PD +TYN+MI  LC+R  +  L + VL+++
Sbjct: 157 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG-KLDLALKVLDQL 215

Query: 120 LEMGITLCMTTFQSLVAAYVGFG-------------------DLEIAETIVQAM-REGRR 159
           L       + T+  L+ A +  G                   D+    TI++ M +EG  
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV 275

Query: 160 D-VCKIIRELDLE----DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA---- 210
           D   ++IR L+L+    D  S N         +  + L N         L+ K F+    
Sbjct: 276 DRAFEMIRNLELKGCEPDVISYN---------ILLRALLNQGKWEEGEKLMTKMFSEKCD 326

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y+ L+     +G++ + + +L  M+ +      PD  +Y  +++A  + G +D A
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK---GLTPDAYSYDPLIAAFCREGRLDVA 383

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            + L  M   G   + + YN +L   C+  + D+A E+  ++  +    P+  SYN +  
Sbjct: 384 IEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG-EVGCSPNSSSYNTMFS 442

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPR 388
                 D   AL    EM + GI P +I+Y +++       +  + +K F+ +  +R   
Sbjct: 443 ALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLC---REGMVDKAFELLVDMRSCE 499

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
               +V +N+++ G+C+   +E+A  +++ M  NG  PN  TY  L  GI  A    EA+
Sbjct: 500 FHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 559

Query: 449 LLWKEI 454
            L  ++
Sbjct: 560 ELANDL 565



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 176/385 (45%), Gaps = 43/385 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P +  ++T++  +   G         + D   + +R       +   +PD  +
Sbjct: 250 MLSRGLKPDMFTYNTIIRGMCKEG---------MVDRAFEMIRNLE----LKGCEPDVIS 296

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L A  N GK ++  +L  +M      P+V+TY+++I    R  +    + +L+ + 
Sbjct: 297 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 356

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
           E G+T    ++  L+AA+   G L++A   ++ M     D C      D+ +Y++     
Sbjct: 357 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS---DGCLP----DIVNYNTVLATL 409

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D   E+F KL    +  S           PNS  Y T+     + G   D +R 
Sbjct: 410 CKNGKADQALEIFGKL--GEVGCS-----------PNSSSYNTMFSALWSSG---DKIRA 453

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +     N   PD +TY +++S L + G +D+A ++L +M       + +TYNI+L G
Sbjct: 454 LHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLG 513

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  +I+ A ++L  M  +    P+  +Y +LI+G       A A+   N++  R  A 
Sbjct: 514 FCKAHRIEDAIDVLDSMVGNG-CRPNETTYTVLIEGIGFAGYRAEAMELANDL-VRINAI 571

Query: 356 TKISYTTLMKAFALSSQPKLANKVF 380
           ++ S+  L + F L +  + +++ F
Sbjct: 572 SEYSFKRLHRTFPLLNVLQRSSQTF 596



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 146/324 (45%), Gaps = 28/324 (8%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K + P+  + T L+KG+     V   VR++  + +       PD   Y  +++   K
Sbjct: 111 MVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEK----FGQPDVFAYNALINGFCK 166

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +D A +VL  M       + +TYNI++   C + ++D A ++L ++  D   +P V+
Sbjct: 167 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSD-NCQPTVI 225

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y ILI+  +L      AL   +EM +RG+ P   +Y T+++      +  + ++ F EM
Sbjct: 226 TYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMC---KEGMVDRAF-EM 281

Query: 384 LRDPRVKV---DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +R+  +K    D++++N+L+      G  EE ++++ +M      PNV TY  L   +  
Sbjct: 282 IRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 341

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             K  EA+ L K +KE+                 L PD    D L     R      A+E
Sbjct: 342 DGKIEEAMNLLKLMKEK----------------GLTPDAYSYDPLIAAFCREGRLDVAIE 385

Query: 501 IVACMEEHGIPPNKTKYKKIYVEM 524
            +  M   G  P+   Y  +   +
Sbjct: 386 FLETMISDGCLPDIVNYNTVLATL 409



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 151/351 (43%), Gaps = 56/351 (15%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K F+P++  Y  ++    + G++   +++L  +    DN   P  +TYT ++ A +  G 
Sbjct: 183 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL--LSDNC-QPTVITYTILIEATMLEGG 239

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A ++L EM   G+  +  TYN +++G C++  +D+A E++R + +    EPDV+SYN
Sbjct: 240 VDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNL-ELKGCEPDVISYN 298

Query: 327 ILIDGF-----------------------------ILIDDSA------GALTFFNEMRAR 351
           IL+                                ILI           A+     M+ +
Sbjct: 299 ILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 358

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P   SY  L+ AF    +  +A +  + M+ D  +  DIV +N ++   C+ G  ++
Sbjct: 359 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP-DIVNYNTVLATLCKNGKADQ 417

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A  I  ++ E G  PN ++Y ++ + +  +     AL +  E+                +
Sbjct: 418 ALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEM----------------V 461

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
              + PDE   +++     R     KA E++  M      P+   Y  + +
Sbjct: 462 SNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLL 512



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 131/302 (43%), Gaps = 21/302 (6%)

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T ++K +    R  + +  L  +        +PD +  T ++       ++ +A +V+  
Sbjct: 86  TQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEI 145

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           + + G P +   YN L+ G+C+  +ID A  +L  M       PD V+YNI+I       
Sbjct: 146 LEKFGQP-DVFAYNALINGFCKMNRIDDATRVLDRMR-SKDFSPDTVTYNIMIGSLCSRG 203

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               AL   +++ +    PT I+YT L++A  L      A K+ DEML    +K D+  +
Sbjct: 204 KLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRG-LKPDMFTY 262

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-LLLWKEIK 455
           N ++ G C+ G+V+ A  +I  ++  G  P+V +Y  L   +    K  E   L+ K   
Sbjct: 263 NTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 322

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           E+C+                 P+      L     R     +A+ ++  M+E G+ P+  
Sbjct: 323 EKCD-----------------PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 365

Query: 516 KY 517
            Y
Sbjct: 366 SY 367


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 125/540 (23%), Positives = 233/540 (43%), Gaps = 75/540 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G LP V+  + V+  L        VE V  + V++K              +P    
Sbjct: 163 MVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEV--YSVMIK-----------CQIRPTIVT 209

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++++    G+  + +++ D M  FG  P+ ++YNV++   +          ++E++ 
Sbjct: 210 FNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMS 269

Query: 121 EMGITLCMTTFQSLVAAY----------------VGFGDLEIAETIVQAM---------R 155
            +G+ +   T+  L+  +                +G G L    T    M          
Sbjct: 270 MLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVS 329

Query: 156 EGRRDVCKIIRELDLEDYSSENE--------GDDDDDDEVFEKLLPNSINPSS------- 200
           + RR +  ++ E  + D  S N         G+  +   +F +L   ++ PS        
Sbjct: 330 DARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLI 389

Query: 201 ---------------EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                          +  ++     P+   +T L++G+   G +     +   M  +   
Sbjct: 390 DGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSR--- 446

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD + YTT +   +K G+  +A  +  EM   G P + ITYN+L+ G C+    D A
Sbjct: 447 GLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDA 506

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            EL+++M  +  I PD V+Y  +I   ++      A   F++M  +GI P+ ++YT L+ 
Sbjct: 507 NELVQKMRLEG-IVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIH 565

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           ++A+  +   A K FDEM +D  V  +++ +N L+ G C+  +++ A  +   M+  G  
Sbjct: 566 SYAVRGRLDFAKKYFDEM-QDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVS 624

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           PN  TY  L N  S  +   +AL L+K++ +R E+K +     S L   L  D +LL  L
Sbjct: 625 PNKYTYTILINENSNLQYWQDALKLYKDMLDR-EIKPDSC-THSALMKHLSKDYKLLAVL 682



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 162/355 (45%), Gaps = 57/355 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    + T+M     EG V   V +L  MR        P+ V+Y  +V+ L   G  DRA
Sbjct: 205 PTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMF---GCDPNDVSYNVLVNGLSGKGEFDRA 261

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM------------------ 312
           ++++ +M+ +G+  +  TYN L++G+C++   ++A +L REM                  
Sbjct: 262 KELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYS 321

Query: 313 ------ADDAK----------IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                   DA+          + PD+VSYN LI G+  + + A AL  F+E+R++ + P+
Sbjct: 322 LCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPS 381

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++Y TL+     +    +A  + D+M++      D+V + +LV G+C+MG +  AK + 
Sbjct: 382 VVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCP-DVVTFTILVRGFCQMGNLPMAKELF 440

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           + M   G  P+   Y +   G      P +A      +KE  E+K EG       PP L 
Sbjct: 441 DEMLSRGLKPDCIAYTTRIVGELKLGNPSKAF----GMKE--EMKAEG------FPPDLI 488

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTS 531
               L++ L     +   F  A E+V  M   GI P+   Y  I   +H+ + + 
Sbjct: 489 TYNVLINGLC----KLGNFDDANELVQKMRLEGIVPDHVTYTSI---IHAHLISG 536



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 119/486 (24%), Positives = 212/486 (43%), Gaps = 52/486 (10%)

Query: 75  KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134
           +K L +F +M   G  PDV   N ++KL    S  + +  V   +++  I   + TF ++
Sbjct: 154 EKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTM 213

Query: 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK--LL 192
           + +    G++  A  ++  MR    D   +   + +   S   +G+ D   E+ E+  +L
Sbjct: 214 MDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSG--KGEFDRAKELIEQMSML 271

Query: 193 PNSINPSSEPPL--------------------LPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              ++  +  PL                    L +   P    Y T+M      GRVSD 
Sbjct: 272 GLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDA 331

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            R L  M  ++     PD V+Y T++    + G+   A  + +E+    +  + +TYN L
Sbjct: 332 RRYLDVMVNED---LMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTL 388

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C+   +D AK +  +M     + PDVV++ IL+ GF  + +   A   F+EM +RG
Sbjct: 389 IDGGCRTGNLDIAKGMKDDMIKHG-LCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRG 447

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  I+YTT +        P  A  + +EM +      D++ +N+L+ G C++G  ++A
Sbjct: 448 LKPDCIAYTTRIVGELKLGNPSKAFGMKEEM-KAEGFPPDLITYNVLINGLCKLGNFDDA 506

Query: 413 KRIIERMKENGFYPNVATYGSL--ANGIS-LARKPGE------------------ALLLW 451
             ++++M+  G  P+  TY S+  A+ IS L RK  E                   L+  
Sbjct: 507 NELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHS 566

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
             ++ R +  K+  +   D    + P+    +AL     +      A  + A ME  G+ 
Sbjct: 567 YAVRGRLDFAKKYFDEMQD--KGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVS 624

Query: 512 PNKTKY 517
           PNK  Y
Sbjct: 625 PNKYTY 630


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 193/437 (44%), Gaps = 35/437 (8%)

Query: 34  LFDVVVKRVRK------FSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           L D +VK  R       F      S   P+   Y  V+N     GK  + ++L D M+E 
Sbjct: 106 LVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNET 165

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G  P+V+TY+V+++   +A R      +L+ +   G    +  + +L+        L+ A
Sbjct: 166 GCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEA 225

Query: 148 ETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
             +VQ M R G          L +E +    +      D  F   L   ++    PP + 
Sbjct: 226 LELVQLMIRSGCYPTVVTYNSL-MELFCRSKQ-----VDRAFR--LIQVMSERGCPPDVI 277

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
                    Y T++ G   + R+ D   +L  M         PD +TY+T++  L K   
Sbjct: 278 N--------YNTVIAGLCRDARLDDAQALLKQMVAAR---CVPDVITYSTIIDGLCKDWR 326

Query: 267 MDR------ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           +D       A ++L  M + G P N  TY ++++G C+  +  +A  LLR M D +++ P
Sbjct: 327 VDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID-SEVVP 385

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D+ S++++I       D   A   F  M  R   P  ++Y  L+   +   +   A +VF
Sbjct: 386 DLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF 445

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           + M+   R  V    +N +++G C +G +EEA R++E M     +P+ A+YG+L  G+  
Sbjct: 446 ELMVESFRPGV--ATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503

Query: 441 ARKPGEALLLWKEIKER 457
                EA  L++ ++ +
Sbjct: 504 VSCVEEAYELFQAVEAK 520



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 151/328 (46%), Gaps = 23/328 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P   ++  ++KG    GR  D    LG  +        PD +T+  +V ALVK+G ++ A
Sbjct: 63  PGVAVHNGVIKGLCKAGRFGDA---LGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119

Query: 271 RQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            Q+   M T      N +TY  ++ G C+  ++D+A ELL ++ ++    P+V++Y++L+
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL-DLMNETGCCPNVITYSVLV 178

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G      +    T   EM  RG  P  I Y TL+     S +   A ++   M+R    
Sbjct: 179 EGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY 238

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL-ARKPGEAL 448
              +V +N L+E +CR   V+ A R+I+ M E G  P+V  Y ++  G+   AR      
Sbjct: 239 PT-VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQA 297

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA-DICVRAAF-FRKALEIVACME 506
           LL + +  RC              P +     ++D L  D  V A +    A EI+  M+
Sbjct: 298 LLKQMVAARC-------------VPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMK 344

Query: 507 EHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           + G PPN   Y  + +E   R   S+ A
Sbjct: 345 QTGCPPNAGTY-AVVIEGLCRARKSQQA 371



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 59/350 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   +  L+   +  GRV +  ++  +M     +   P+ VTYTTV++ L K G +DRA
Sbjct: 98  PDIITFNILVDALVKSGRVEEAFQIFESM--HTSSQCLPNVVTYTTVINGLCKDGKLDRA 155

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L  M   G   N ITY++L++G C+  + DK   LL+EM      +PDV+ YN L++
Sbjct: 156 IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG-FQPDVIMYNTLLN 214

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA-------------- 376
           G         AL     M   G  PT ++Y +LM+ F  S Q   A              
Sbjct: 215 GLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPP 274

Query: 377 -----NKVFDEMLRDPRVK---------------VDIVAWNMLVEGYCRMGLV------E 410
                N V   + RD R+                 D++ ++ +++G C+   V      E
Sbjct: 275 DVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLE 334

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            A  I+E MK+ G  PN  TY  +  G+  ARK  +AL L + +             DS+
Sbjct: 335 AACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRM------------IDSE 382

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + P L     ++ +L     ++     A +I   M E    PN   Y  +
Sbjct: 383 VVPDLSSFSMVIGSLC----KSHDLDAAYKIFGMMSERECKPNPVAYAAL 428



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 21/274 (7%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+  TY +++  L KAG +D+A ++L EM   G+P     +N ++KG C+  +   A   
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGY 87

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAF 367
            + +A   K  PD++++NIL+D  +       A   F  M       P  ++YTT++   
Sbjct: 88  FKTVA-GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGL 146

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               +   A ++ D ++ +     +++ +++LVEG C+ G  ++   +++ M   GF P+
Sbjct: 147 CKDGKLDRAIELLD-LMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPD 205

Query: 428 VATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           V  Y +L NG+  +R+  EAL L+   I+  C                  P     ++L 
Sbjct: 206 VIMYNTLLNGLCKSRRLDEALELVQLMIRSGC-----------------YPTVVTYNSLM 248

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++  R+    +A  ++  M E G PP+   Y  +
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTV 282



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 120/267 (44%), Gaps = 21/267 (7%)

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           LV+AG   +A Q+  E     VP N  TY  L+ G C+  ++D+A ELL EM D   I P
Sbjct: 8   LVRAGQHGQAVQLFRE--ERCVP-NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRG-IPP 63

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            V  +N +I G         AL +F  +      P  I++  L+ A   S + + A ++F
Sbjct: 64  GVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIF 123

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           + M    +   ++V +  ++ G C+ G ++ A  +++ M E G  PNV TY  L  G+  
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK 183

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
           A +  +   L +E+  R                  +PD  + + L +   ++    +ALE
Sbjct: 184 AGRTDKGFTLLQEMTRR----------------GFQPDVIMYNTLLNGLCKSRRLDEALE 227

Query: 501 IVACMEEHGIPPNKTKYKKIYVEMHSR 527
           +V  M   G  P    Y  + +E+  R
Sbjct: 228 LVQLMIRSGCYPTVVTYNSL-MELFCR 253



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/428 (20%), Positives = 186/428 (43%), Gaps = 36/428 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V  +S +V  L  +G      + K F ++ +  R+   PD++         
Sbjct: 162 MNETGCCPNVITYSVLVEGLCKAG-----RTDKGFTLLQEMTRRGFQPDVI--------M 208

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +LN      +  + L+L   M   G  P V+TYN +++L  R+ +      +++ + 
Sbjct: 209 YNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELD--LEDYSSE 176
           E G    +  + +++A       L+ A+ +++ M   R   DV      +D   +D+  +
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVD 328

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +   +   E+ E ++  +  P            PN+  Y  +++G     R   + + L
Sbjct: 329 ADWKLEAACEILE-MMKQTGCP------------PNAGTYAVVIEGLC---RARKSQQAL 372

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             +RR  D+   PD  +++ V+ +L K+  +D A ++   M+      N + Y  L+ G 
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            +  ++DKA  +   M +  +  P V +YN ++DG   +     A+     M  +   P 
Sbjct: 433 SKGGEVDKAVRVFELMVESFR--PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             SY  L++     S  + A ++F + +      +++  +N+LV   C+   + +A  + 
Sbjct: 491 GASYGALIRGLCRVSCVEEAYELF-QAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVA 549

Query: 417 ERMKENGF 424
            ++ E G+
Sbjct: 550 NKLIEAGY 557


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 193/437 (44%), Gaps = 35/437 (8%)

Query: 34  LFDVVVKRVRK------FSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           L D +VK  R       F      S   P+   Y  V+N     GK  + ++L D M+E 
Sbjct: 106 LVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNET 165

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G  P+V+TY+V+++   +A R      +L+ +   G    +  + +L+        L+ A
Sbjct: 166 GCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEA 225

Query: 148 ETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
             +VQ M R G          L +E +    +      D  F   L   ++    PP + 
Sbjct: 226 LELVQLMIRSGCYPTVVTYNSL-MELFCRSKQ-----VDRAFR--LIQVMSERGCPPDVI 277

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
                    Y T++ G   + R+ D   +L  M         PD +TY+T++  L K   
Sbjct: 278 N--------YNTVIAGLCRDARLDDAQALLKQMVAAR---CVPDVITYSTIIDGLCKDWR 326

Query: 267 MDR------ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           +D       A ++L  M + G P N  TY ++++G C+  +  +A  LLR M D +++ P
Sbjct: 327 VDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID-SEVVP 385

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D+ S++++I       D   A   F  M  R   P  ++Y  L+   +   +   A +VF
Sbjct: 386 DLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF 445

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           + M+   R  V    +N +++G C +G +EEA R++E M     +P+ A+YG+L  G+  
Sbjct: 446 ELMVESFRPGV--ATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503

Query: 441 ARKPGEALLLWKEIKER 457
                EA  L++ ++ +
Sbjct: 504 VSCVEEAYELFQAVEAK 520



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 59/350 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   +  L+   +  GRV +  ++  +M     +   P+ VTYTTV++ L K G +DRA
Sbjct: 98  PDIITFNILVDALVKSGRVEEAFQIFESM--HTSSQCLPNVVTYTTVINGLCKDGKLDRA 155

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L  M   G   N ITY++L++G C+  + DK   LL+EM      +PDV+ YN L++
Sbjct: 156 IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG-FQPDVIMYNTLLN 214

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA-------------- 376
           G         AL     M   G  PT ++Y +LM+ F  S Q   A              
Sbjct: 215 GLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPP 274

Query: 377 -----NKVFDEMLRDPRVK---------------VDIVAWNMLVEGYCRMGLV------E 410
                N V   + RD R+                 D++ ++ +++G C+   V      E
Sbjct: 275 DVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLE 334

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
            A  I+E MK+ G  PN  TY  +  G+  ARK  +AL L + +             DS+
Sbjct: 335 AACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRM------------IDSE 382

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + P L     ++ +L     ++     A +I   M E    PN   Y  +
Sbjct: 383 VVPDLSSFSMVIGSLC----KSHDLDAAYKIFGMMSERECKPNPVAYAAL 428



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 151/328 (46%), Gaps = 23/328 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P   ++  +++G    GR  D    LG  +        PD +T+  +V ALVK+G ++ A
Sbjct: 63  PGVAVHNGVIRGLCKAGRFGDA---LGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119

Query: 271 RQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            Q+   M T      N +TY  ++ G C+  ++D+A ELL ++ ++    P+V++Y++L+
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL-DLMNETGCCPNVITYSVLV 178

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G      +    T   EM  RG  P  I Y TL+     S +   A ++   M+R    
Sbjct: 179 EGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY 238

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL-ARKPGEAL 448
              +V +N L+E +CR   V+ A R+I+ M E G  P+V  Y ++  G+   AR      
Sbjct: 239 PT-VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQA 297

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA-DICVRAAF-FRKALEIVACME 506
           LL + +  RC              P +     ++D L  D  V A +    A EI+  M+
Sbjct: 298 LLKQMVAARC-------------VPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMK 344

Query: 507 EHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           + G PPN   Y  + +E   R   S+ A
Sbjct: 345 QTGCPPNAGTY-AVVIEGLCRARKSQQA 371



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 129/274 (47%), Gaps = 21/274 (7%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+  TY +++  L KAG +D+A ++L EM   G+P     +N +++G C+  +   A   
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGY 87

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAF 367
            + +A   K  PD++++NIL+D  +       A   F  M       P  ++YTT++   
Sbjct: 88  FKTVA-GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGL 146

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               +   A ++ D ++ +     +++ +++LVEG C+ G  ++   +++ M   GF P+
Sbjct: 147 CKDGKLDRAIELLD-LMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPD 205

Query: 428 VATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           V  Y +L NG+  +R+  EAL L+   I+  C                  P     ++L 
Sbjct: 206 VIMYNTLLNGLCKSRRLDEALELVQLMIRSGC-----------------YPTVVTYNSLM 248

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           ++  R+    +A  ++  M E G PP+   Y  +
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTV 282



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 120/267 (44%), Gaps = 21/267 (7%)

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           LV+AG   +A Q+  E     VP N  TY  L+ G C+  ++D+A ELL EM D   I P
Sbjct: 8   LVRAGQHGQAVQLFRE--ERCVP-NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRG-IPP 63

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            V  +N +I G         AL +F  +      P  I++  L+ A   S + + A ++F
Sbjct: 64  GVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIF 123

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           + M    +   ++V +  ++ G C+ G ++ A  +++ M E G  PNV TY  L  G+  
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK 183

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
           A +  +   L +E+  R                  +PD  + + L +   ++    +ALE
Sbjct: 184 AGRTDKGFTLLQEMTRR----------------GFQPDVIMYNTLLNGLCKSRRLDEALE 227

Query: 501 IVACMEEHGIPPNKTKYKKIYVEMHSR 527
           +V  M   G  P    Y  + +E+  R
Sbjct: 228 LVQLMIRSGCYPTVVTYNSL-MELFCR 253



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/428 (20%), Positives = 186/428 (43%), Gaps = 36/428 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V  +S +V  L  +G      + K F ++ +  R+   PD++         
Sbjct: 162 MNETGCCPNVITYSVLVEGLCKAG-----RTDKGFTLLQEMTRRGFQPDVI--------M 208

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +LN      +  + L+L   M   G  P V+TYN +++L  R+ +      +++ + 
Sbjct: 209 YNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELD--LEDYSSE 176
           E G    +  + +++A       L+ A+ +++ M   R   DV      +D   +D+  +
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVD 328

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +   +   E+ E ++  +  P            PN+  Y  +++G     R   + + L
Sbjct: 329 ADWKLEAACEILE-MMKQTGCP------------PNAGTYAVVIEGLC---RARKSQQAL 372

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             +RR  D+   PD  +++ V+ +L K+  +D A ++   M+      N + Y  L+ G 
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            +  ++DKA  +   M +  +  P V +YN ++DG   +     A+     M  +   P 
Sbjct: 433 SKGGEVDKAVRVFELMVESFR--PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             SY  L++     S  + A ++F + +      +++  +N+LV   C+   + +A  + 
Sbjct: 491 GASYGALIRGLCRVSCVEEAYELF-QAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVA 549

Query: 417 ERMKENGF 424
            ++ E G+
Sbjct: 550 NKLIEAGY 557


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 175/434 (40%), Gaps = 56/434 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    + +++     L    K LQ+F QM +   KPD   Y V+I    + ++  L    
Sbjct: 85  PTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 144

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            ER+++ G      T+  LV +       E    I + M         +     +  Y  
Sbjct: 145 FERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYC- 203

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D    +  +L     +PS               +Y+TL+ G     R  D  R 
Sbjct: 204 -KAGRIDQALSLMRRLKGTGRSPSGS-------------LYSTLIDGLCKHDR-HDEARE 248

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M   +      D + YT+ +S L KAG +D A+ V  +M   G   + ++YN+++  
Sbjct: 249 LFEMAAGDVQ----DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYS 304

Query: 296 YCQQLQIDKAKEL-----------------------------------LREMADDAKIEP 320
            C+  ++ +AKEL                                   L  M +     P
Sbjct: 305 LCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAP 364

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            VV+Y+ +IDG    D    A     +MR  G  P  ++YT ++ AF    +   A ++F
Sbjct: 365 SVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELF 424

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             M  +    +D+VA+N+L+ GYCR   V+EA  +IE M   G  PNV +  ++ +G+  
Sbjct: 425 QRM-HERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCK 483

Query: 441 ARKPGEALLLWKEI 454
             +  EA LL +++
Sbjct: 484 ESRVEEARLLMEKM 497



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  N+    +L++ ++N+G   +  R+    + +      PD  TY T++    KA  + 
Sbjct: 13  FQHNTYTCNSLLEVFVNDGCHREAYRVF---KDELVTLFRPDDFTYGTLIRGFCKAEQIP 69

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  +L EM   G+    +T+  L++  C+    DKA ++  +M  D K++PD   Y ++
Sbjct: 70  QAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMI-DMKVKPDAFLYTVV 128

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I     I+    A ++F  M   G  P K++YT L+ +   + + +  +++F+EML    
Sbjct: 129 IGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGH 188

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              ++V +  +V GYC+ G +++A  ++ R+K  G  P+ + Y +L +G+    +  EA 
Sbjct: 189 -SPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEAR 247

Query: 449 LLWK 452
            L++
Sbjct: 248 ELFE 251



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 169/402 (42%), Gaps = 57/402 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           + +T   N++L    N G  ++  ++F        +PD  TY  +I+   +A +    V 
Sbjct: 14  QHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVN 73

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  +   GIT  + TF SL+                       R +C    EL+  D +
Sbjct: 74  LLGEMKAAGITPTIVTFGSLI-----------------------RKLC----ELNFTDKA 106

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +          +F +++   + P             ++ +YT ++ G++   +++    
Sbjct: 107 LQ----------IFHQMIDMKVKP-------------DAFLYTVVI-GHLC--KINKLDL 140

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                 R   +   PD VTYT +V +L KA   ++  Q+  EM   G     +TY  ++ 
Sbjct: 141 AASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVN 200

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+  +ID+A  L+R +    +  P    Y+ LIDG    D    A   F EM A G  
Sbjct: 201 GYCKAGRIDQALSLMRRLKGTGR-SPSGSLYSTLIDGLCKHDRHDEARELF-EM-AAGDV 257

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
              I YT+ +     + +   A  V  +M+ +     D V++N+++   C+   V EAK 
Sbjct: 258 QDVIVYTSFISGLCKAGKLDEAKAVHVKMI-EAGCAPDPVSYNVIIYSLCKDNRVSEAKE 316

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           ++++  E    P V     L +G+  +R+  EA ++ + + E
Sbjct: 317 LMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLE 358



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 6/178 (3%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD--AKIEPDVVSYNILIDGFILID 336
           R G   N  T N LL+ +         +E  R   D+      PD  +Y  LI GF   +
Sbjct: 10  RPGFQHNTYTCNSLLEVFVND---GCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAE 66

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A+    EM+A GI PT +++ +L++     +    A ++F +M+ D +VK D   +
Sbjct: 67  QIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMI-DMKVKPDAFLY 125

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++   C++  ++ A    ERM ++G  P+  TY  L + +  A K  +   +++E+
Sbjct: 126 TVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEM 183



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 18/157 (11%)

Query: 1   MLRSG-YLPHVKAWSTVVSRLAASGDDGPVESVKLFD--VVVKRVRKFSDPDIVSDSKPD 57
           ML +G   P V  +S V+        DG  ++ +L D  VV++++R+       +   PD
Sbjct: 356 MLETGDRAPSVVTYSAVI--------DGLCKADRLDDAYVVLQKMRR-------AGCVPD 400

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
              Y A+++A   +G+  +  +LF +MHE G   DV+ YN++I+   RA++    + ++E
Sbjct: 401 VVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIE 460

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
            +   GI   + +  ++V        +E A  +++ M
Sbjct: 461 EMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 342 LTFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLANKVF-DEMLRDPRVKVDIVAWNML 399
           + FF   +AR G      +  +L++ F      + A +VF DE++     + D   +  L
Sbjct: 1   MLFFQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELV--TLFRPDDFTYGTL 58

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           + G+C+   + +A  ++  MK  G  P + T+GSL   +       +AL ++ ++
Sbjct: 59  IRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQM 113


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 123/540 (22%), Positives = 232/540 (42%), Gaps = 64/540 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V +++T+V       ++   E+++L  V+    +  S P       PD  +YN V
Sbjct: 261 GCTPNVVSYNTLVKGFC--NENRAEEALELLHVMADD-QGLSCP-------PDVVSYNTV 310

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G+  K   LF QM + G  PDV+TYN +I    +A        V +++L+ G+
Sbjct: 311 INGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGV 370

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                T+  L+  Y+  G  +    +++ M     +    I  L L DY  +N G   + 
Sbjct: 371 KPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYAL-LLDYLCKN-GRCTEA 428

Query: 185 DEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             +F+ ++   I P +           +  +  +PN   Y  L+      GRV D +   
Sbjct: 429 RNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKF 488

Query: 237 GAM--------------RRQE------DNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             M              + +E      D     D V + T++  L + G +  A++++  
Sbjct: 489 NQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIEL 548

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI--- 333
           M R+GV  + I+YN L+ G+C   + D+A +LL  M     ++P+  +YN L+ G+    
Sbjct: 549 MLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMV-SIGLKPNEFTYNTLLHGYCKAR 607

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            IDD   A +   EM   G  P  ++Y T++     + +   A +++  M+ + R + D+
Sbjct: 608 RIDD---AYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMI-NSRTQWDM 663

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             +N+++ G C+   V+EA ++ + +   G   ++ T+  +   +    K  +A+ L+  
Sbjct: 664 YTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFAT 723

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           I                    L PD E    +A+  ++     +   + + MEE+G  PN
Sbjct: 724 ISAY----------------GLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPN 767



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 132/308 (42%), Gaps = 33/308 (10%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M R+  +   PD  TY+ ++    + G ++    V   + + G   N I +N L
Sbjct: 177 ISLFDRMVRECSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQL 236

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---R 349
           LKG C   ++D+A  +L     +    P+VVSYN L+ GF   + +  AL   + M   +
Sbjct: 237 LKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQ 296

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
                P  +SY T++  F    Q   A  +F +M+ D  +  D+V +N +++G C+  +V
Sbjct: 297 GLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMI-DRGIPPDVVTYNTVIDGLCKAQVV 355

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           + AK + ++M + G  P+  TY  L +G     K       WKE+    E       +  
Sbjct: 356 DRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGK-------WKEVVRLLEEM-----STH 403

Query: 470 DLPPPLKPDEELLDALA------------DICVRA-----AFFRKALEIVACMEEHGIPP 512
           DL P       LLD L             D  +R      A   +A+ I   M + G+ P
Sbjct: 404 DLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSP 463

Query: 513 NKTKYKKI 520
           N   Y  +
Sbjct: 464 NVVNYGAL 471



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 120/528 (22%), Positives = 208/528 (39%), Gaps = 131/528 (24%)

Query: 7   LPHVKAWS--------TVVSRLAASGDDGPVES---VKLFDVVVKRVRKFSDPDIVSDSK 55
           LPH +  S        T VSR  ASG    +ES   + LFD   + VR+ SD        
Sbjct: 143 LPHARPASVTAFNHLLTAVSR--ASGRHSTLESQLGISLFD---RMVRECSD-----KVA 192

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFD--------------------------------- 82
           PD   Y+ ++     +G+ +    +F                                  
Sbjct: 193 PDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNI 252

Query: 83  ---QMHEFGAKPDVLTYNVMIK-LC--ARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
              +M EFG  P+V++YN ++K  C   RA     L+ V+     +     + ++ +++ 
Sbjct: 253 LLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVIN 312

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIREL--DLEDYSSENEGDD-----DDDDEVFE 189
            +   G ++ A  +   M         I R +  D+  Y++  +G       D    VF+
Sbjct: 313 GFFREGQVDKAYNLFLQM---------IDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQ 363

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           ++L   + PS+               Y  L+ GY++ G+  + VR+L  M   +     P
Sbjct: 364 QMLDKGVKPSNG-------------TYNCLIHGYLSTGKWKEVVRLLEEMSTHD---LEP 407

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D   Y  ++  L K G    AR +   + R G+  + +              ID+A  + 
Sbjct: 408 DCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAM--------------IDEAVCIF 453

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN----------------------- 346
            +M     + P+VV+Y  LID    +     A+  FN                       
Sbjct: 454 DKMRQQG-LSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVF 512

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  +GI    + + TLM       +   A ++ + MLR   V+ D++++N LV+G+C  
Sbjct: 513 EMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLR-VGVRPDVISYNTLVDGHCLT 571

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           G  +EA ++++ M   G  PN  TY +L +G   AR+  +A  L +E+
Sbjct: 572 GRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREM 619


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 185/398 (46%), Gaps = 57/398 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  +++N+V++    LG+ K    +   M  FG +PDV++YN                  
Sbjct: 54  PHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYN------------------ 95

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
                            SL+  +   GD+  A  +++++R     +CK     D+  ++S
Sbjct: 96  -----------------SLIDGHCRNGDIRSASLVLESLRASHGFICKP----DIVSFNS 134

Query: 176 ENEGDDDDD--DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              G       DEVF  +            ++ K  +PN   Y+T +  +   G +   +
Sbjct: 135 LFNGFSKMKMLDEVFVYM-----------GVMLKCCSPNVVTYSTWIDTFCKSGELQLAL 183

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +   +M+R   +A  P+ VT+T ++    KAG ++ A  +  EM R+ +  N +TY  L+
Sbjct: 184 KSFHSMKR---DALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI 240

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C++ ++ +A+E+   M +D ++EP+ + Y  +IDGF    DS  A+ F  +M  +G+
Sbjct: 241 DGFCKKGEMQRAEEMYSRMVED-RVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGM 299

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
                +Y  ++     + + K A ++ ++M +   V  D+V +  ++  Y + G ++ A 
Sbjct: 300 RLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVP-DMVIFTTMMNAYFKSGRMKAAV 358

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            +  ++ E GF P+V    ++ +GI+   +  EA++ +
Sbjct: 359 NMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYF 396



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 198/455 (43%), Gaps = 34/455 (7%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           LQ   ++ +    PD  T N  I     ++   L +  L  ++  G T   ++F S+V+ 
Sbjct: 6   LQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNSVVSF 65

Query: 138 YVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
               G ++ AE IV +M R G    C    E D+  Y+S  +G   + D     L+  S+
Sbjct: 66  VCKLGQVKFAEDIVHSMPRFG----C----EPDVISYNSLIDGHCRNGDIRSASLVLESL 117

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
             S      P   + NS     L  G+     + +    +G M +       P+ VTY+T
Sbjct: 118 RASHGFICKPDIVSFNS-----LFNGFSKMKMLDEVFVYMGVMLK----CCSPNVVTYST 168

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
            +    K+G +  A +    M R  +  N +T+  L+ GYC+   ++ A  L +EM    
Sbjct: 169 WIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRR-V 227

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           ++  +VV+Y  LIDGF    +   A   ++ M    + P  + YTT++  F        A
Sbjct: 228 RMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNA 287

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            K   +ML +  +++DI A+ +++ G C  G ++EA  I+E M+++   P++  + ++ N
Sbjct: 288 MKFLAKML-NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMN 346

Query: 437 GISLARKPGEALLLWKEIKER--------CEVKKEGVNADSDLPPPL------KPDEELL 482
               + +   A+ ++ ++ ER             +G+  +  L   +      K ++ + 
Sbjct: 347 AYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVMY 406

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             L D   +   F +   + + + E G+ P+K  Y
Sbjct: 407 TVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMY 441



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/494 (19%), Positives = 204/494 (41%), Gaps = 92/494 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKF-SDPDIVSDS----- 54
           ++  GY PH  ++++VVS +   G       VK  + +V  + +F  +PD++S +     
Sbjct: 47  LVSRGYTPHRSSFNSVVSFVCKLGQ------VKFAEDIVHSMPRFGCEPDVISYNSLIDG 100

Query: 55  -------------------------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF-- 87
                                    KPD  ++N++ N      K K   ++F  M     
Sbjct: 101 HCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNG---FSKMKMLDEVFVYMGVMLK 157

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
              P+V+TY+  I    ++    L +     +    ++  + TF  L+  Y   GDLE+A
Sbjct: 158 CCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVA 217

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK 207
            ++ + MR  R  +  +     ++ +    +G+    +E++ +++ + + P         
Sbjct: 218 VSLYKEMRRVRMSLNVVTYTALIDGFC--KKGEMQRAEEMYSRMVEDRVEP--------- 266

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
               NS +YTT++ G+   G   + ++ L  M  Q       D   Y  ++S L   G +
Sbjct: 267 ----NSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQ---GMRLDITAYGVIISGLCGNGKL 319

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             A +++ +M +  +  + + +  ++  Y +  ++  A  +  ++ +    EPDVV+ + 
Sbjct: 320 KEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERG-FEPDVVALST 378

Query: 328 LIDGF------------------------ILID------DSAGALTFFNEMRARGIAPTK 357
           +IDG                         +LID      D       F+++   G+ P K
Sbjct: 379 MIDGIAKNGQLHEAIVYFCIEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDK 438

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             YT+ +           A K+   M+++  + +D++A+  L+ G    GL+ EA+++ +
Sbjct: 439 FMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLL-LDLLAYTTLIYGLASKGLMVEARQVFD 497

Query: 418 RMKENGFYPNVATY 431
            M  +G  P+ A +
Sbjct: 498 EMLNSGISPDSAVF 511



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 23/256 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  AY  +++     GK K+  ++ + M +    PD++ +  M+    ++ R    V + 
Sbjct: 302 DITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMY 361

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            +++E G    +    +++      G L   E IV    E   DV   +    L D   +
Sbjct: 362 HKLIERGFEPDVVALSTMIDGIAKNGQLH--EAIVYFCIEKANDVMYTV----LIDALCK 415

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            EGD  + + +F K+        SE  L+P  F     +YT+ + G   +G + D  ++ 
Sbjct: 416 -EGDFIEVERLFSKI--------SEAGLVPDKF-----MYTSWIAGLCKQGNLVDAFKLK 461

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M ++       D + YTT++  L   G M  ARQV  EM   G+  +   +++L++ Y
Sbjct: 462 TRMVQE---GLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAY 518

Query: 297 CQQLQIDKAKELLREM 312
            ++  +  A +LL +M
Sbjct: 519 EKEGNMAAASDLLLDM 534



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/379 (18%), Positives = 149/379 (39%), Gaps = 52/379 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y+  ++     G+ +  L+ F  M      P+V+T+  +I    +A    + V +
Sbjct: 161 PNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSL 220

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +  + ++L + T+ +L+  +   G+++ AE +   M E R +   ++    ++ +  
Sbjct: 221 YKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFF- 279

Query: 176 ENEGDDDDDDEVFEKLLPNS--------------------INPSSE--PPLLPKTFAPNS 213
              GD D+  +   K+L                       +  ++E    +      P+ 
Sbjct: 280 -QRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDM 338

Query: 214 RIYTTLMKGYMNEGRVSDTVRM------------LGAMRRQEDNASH------------- 248
            I+TT+M  Y   GR+   V M            + A+    D  +              
Sbjct: 339 VIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCI 398

Query: 249 --PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
              + V YT ++ AL K G      ++ ++++  G+  ++  Y   + G C+Q  +  A 
Sbjct: 399 EKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAF 458

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           +L   M  +  +  D+++Y  LI G         A   F+EM   GI+P    +  L++A
Sbjct: 459 KLKTRMVQEGLL-LDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRA 517

Query: 367 FALSSQPKLANKVFDEMLR 385
           +        A+ +  +M R
Sbjct: 518 YEKEGNMAAASDLLLDMQR 536



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/316 (19%), Positives = 129/316 (40%), Gaps = 25/316 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           +   Y A+++     G+ ++  +++ +M E   +P+ L Y  +I     R    + + F 
Sbjct: 232 NVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKF- 290

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++L  G+ L +T +  +++   G G L+ A  IV+ M +       +I    +  Y  
Sbjct: 291 LAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYF- 349

Query: 176 ENEGDDDDDDEVFEKLLPNSINPS-----------------SEPPLLPKTFAPNSRIYTT 218
              G       ++ KL+     P                   E  +       N  +YT 
Sbjct: 350 -KSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVMYTV 408

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+     EG   +  R+   +    +    PD   YT+ ++ L K G++  A ++   M 
Sbjct: 409 LIDALCKEGDFIEVERLFSKI---SEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMV 465

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           + G+  + + Y  L+ G   +  + +A+++  EM +   I PD   +++LI  +    + 
Sbjct: 466 QEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSG-ISPDSAVFDLLIRAYEKEGNM 524

Query: 339 AGALTFFNEMRARGIA 354
           A A     +M+ RG+ 
Sbjct: 525 AAASDLLLDMQRRGLV 540


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 191/428 (44%), Gaps = 41/428 (9%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
           +PD  AYNA++N    + +     ++ D+M      PD +TYN+MI  LC+R  +  L +
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG-KLDLAL 213

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFG-------------------DLEIAETIVQAM 154
            VL ++L       + T+  L+ A +  G                   D+    TI++ M
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273

Query: 155 -REGRRD-VCKIIRELDLEDYSSENEGDDDD--DDEVFEKLLPNSINPSSEPPLLPKTFA 210
            +EG  D   +++R L+L       +G + D     +  + L N         L+ K F+
Sbjct: 274 CKEGMVDRAFEMVRNLEL-------KGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326

Query: 211 ----PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
               PN   Y+ L+     +G++ + + +L  M+ +      PD  +Y  +++A  + G 
Sbjct: 327 EKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK---GLTPDAYSYDPLIAAFCREGR 383

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A + L  M   G   + + YN +L   C+  + D+A E+  ++  +    P+  SYN
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG-EVGCSPNSSSYN 442

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +        D   AL    EM + GI P +I+Y +++           A ++  +M R 
Sbjct: 443 TMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDM-RS 501

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
                 +V +N+++ G+C+   +E+A  ++E M  NG  PN  TY  L  GI  A    E
Sbjct: 502 CEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAE 561

Query: 447 ALLLWKEI 454
           A+ L  ++
Sbjct: 562 AMELANDL 569



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 175/385 (45%), Gaps = 43/385 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P +  ++T++  +   G         + D   + VR       +  S+PD  +
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEG---------MVDRAFEMVRNLE----LKGSEPDVIS 300

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L A  N GK ++  +L  +M      P+V+TY+++I    R  +    + +L+ + 
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 360

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
           E G+T    ++  L+AA+   G L++A   ++ M     D C      D+ +Y++     
Sbjct: 361 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS---DGCLP----DIVNYNTVLATL 413

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D   E+F KL    +  S           PNS  Y T+     + G   D +R 
Sbjct: 414 CKNGKADQALEIFGKL--GEVGCS-----------PNSSSYNTMFSALWSSG---DKIRA 457

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +     N   PD +TY +++S L + G +D A ++L +M       + +TYNI+L G
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLG 517

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  +I+ A  +L  M  +    P+  +Y +LI+G       A A+   N++  R  A 
Sbjct: 518 FCKAHRIEDAINVLESMVGNG-CRPNETTYTVLIEGIGFAGYRAEAMELANDL-VRIDAI 575

Query: 356 TKISYTTLMKAFALSSQPKLANKVF 380
           ++ S+  L + F L +  + +++ F
Sbjct: 576 SEYSFKRLHRTFPLLNVLQRSSQTF 600



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 145/320 (45%), Gaps = 28/320 (8%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K + P+  + T L+KG+     +   VR++  + +       PD   Y  +++   K
Sbjct: 115 MVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEK----FGQPDVFAYNALINGFCK 170

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +D A +VL  M       + +TYNI++   C + ++D A ++L ++  D   +P V+
Sbjct: 171 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSD-NCQPTVI 229

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y ILI+  +L      AL   +EM +RG+ P   +Y T+++      +  + ++ F EM
Sbjct: 230 TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC---KEGMVDRAF-EM 285

Query: 384 LRDPRVKV---DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +R+  +K    D++++N+L+      G  EE ++++ +M      PNV TY  L   +  
Sbjct: 286 VRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 345

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             K  EA+ L K +KE+                 L PD    D L     R      A+E
Sbjct: 346 DGKIEEAMNLLKLMKEK----------------GLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 501 IVACMEEHGIPPNKTKYKKI 520
            +  M   G  P+   Y  +
Sbjct: 390 FLETMISDGCLPDIVNYNTV 409



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 150/351 (42%), Gaps = 56/351 (15%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K F+P++  Y  ++    + G++   +++L  +    DN   P  +TYT ++ A +  G 
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL--LSDNC-QPTVITYTILIEATMLEGG 243

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A +++ EM   G+  +  TYN +++G C++  +D+A E++R +      EPDV+SYN
Sbjct: 244 VDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGS-EPDVISYN 302

Query: 327 ILIDGF-----------------------------ILIDDSA------GALTFFNEMRAR 351
           IL+                                ILI           A+     M+ +
Sbjct: 303 ILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P   SY  L+ AF    +  +A +  + M+ D  +  DIV +N ++   C+ G  ++
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP-DIVNYNTVLATLCKNGKADQ 421

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A  I  ++ E G  PN ++Y ++ + +  +     AL +  E+                +
Sbjct: 422 ALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEM----------------M 465

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
              + PDE   +++     R     +A E++  M      P+   Y  + +
Sbjct: 466 SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLL 516



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 131/302 (43%), Gaps = 21/302 (6%)

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T ++K +    R  + +  L  +        +PD +  T ++       ++ +A +V+  
Sbjct: 90  TQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEI 149

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           + + G P +   YN L+ G+C+  +ID A  +L  M       PD V+YNI+I       
Sbjct: 150 LEKFGQP-DVFAYNALINGFCKMNRIDDATRVLDRMR-SKDFSPDTVTYNIMIGSLCSRG 207

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               AL   N++ +    PT I+YT L++A  L      A K+ DEML    +K D+  +
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG-LKPDMFTY 266

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-LLLWKEIK 455
           N ++ G C+ G+V+ A  ++  ++  G  P+V +Y  L   +    K  E   L+ K   
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           E+C+                 P+      L     R     +A+ ++  M+E G+ P+  
Sbjct: 327 EKCD-----------------PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369

Query: 516 KY 517
            Y
Sbjct: 370 SY 371


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 114/502 (22%), Positives = 206/502 (41%), Gaps = 73/502 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN V+NAC   G  KK L+L  +M E G  PD++T+N+++      ++    +  
Sbjct: 221 PSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAY 280

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--IIRELDLEDY 173
            E +    +     T   ++   V  G    A  +  +MRE RR  C   ++    +  Y
Sbjct: 281 FEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRE-RRTTCHPDVVTYTSIM-Y 338

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S    G  ++   VF+ ++   +              PN   Y  L+  Y + G  ++ +
Sbjct: 339 SYSVCGQAENCKAVFDIMVAEGVR-------------PNIVSYNALLGAYASHGMHTEAL 385

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
                +++   N   PD V+YT++++A  ++   ++AR+V  EM +     N+++YN L+
Sbjct: 386 ETFKLLKQ---NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALI 442

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVS----------------------------- 324
             Y     + +A  LL EM  D  I+PDV+S                             
Sbjct: 443 DAYGSAGMLKEAISLLHEMEQDG-IQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGI 501

Query: 325 ------YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
                 YN  I  ++ + D   AL  +  MRA  + P  ++Y  L+       +   + K
Sbjct: 502 QLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLK 561

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            F++ML D  + +    ++ ++  Y + G + EA      MKE G +P+V TY +L    
Sbjct: 562 FFEDML-DLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAY 620

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
           S     G     W   K   E++  G           +PD  +  +L +   +     + 
Sbjct: 621 S---DDGSWRRAWDLFK---EMENNGT----------QPDAIVCSSLMEALNKGGQPERV 664

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
           L+++  M++  I  N+  Y +I
Sbjct: 665 LQLIEFMKQKKIQLNQKAYFEI 686



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 151/305 (49%), Gaps = 23/305 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y +L+  +   G+    + ++  M+R    A  P   TY  V++A   AG+  +A
Sbjct: 186 PNTDTYNSLIHAHARAGQWCWAINIMDDMQRA---AIPPSRTTYNNVINACGAAGNWKKA 242

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +MT  GV  + IT+NI+L  +    Q  KA     E+   +K+ PD  + NI+I 
Sbjct: 243 LELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYF-EIMKSSKVAPDTCTMNIVIH 301

Query: 331 GFILIDDSAGALTFFNEMRAR--GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
             + I     A+  FN MR R     P  ++YT++M ++++  Q +    VFD M+ +  
Sbjct: 302 CLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEG- 360

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V+ +IV++N L+  Y   G+  EA    + +K+NG  P++ +Y SL N    + +P +A 
Sbjct: 361 VRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAR 420

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            ++ E+++                   KP++   +AL D    A   ++A+ ++  ME+ 
Sbjct: 421 EVFNEMRKN----------------ACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQD 464

Query: 509 GIPPN 513
           GI P+
Sbjct: 465 GIQPD 469



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 150/354 (42%), Gaps = 18/354 (5%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           LF +M E+  KP+  TYN +I   ARA +    + +++ +    I    TT+ +++ A  
Sbjct: 175 LFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACG 234

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             G+ + A  + + M E       I   + L  +  +N          FE +  + +   
Sbjct: 235 AAGNWKKALELCKKMTENGVGPDLITHNIVLSAF--KNGAQYSKAIAYFEIMKSSKV--- 289

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                     AP++     ++   +  G   + + +  +MR +     HPD VTYT+++ 
Sbjct: 290 ----------APDTCTMNIVIHCLVKIGLYGEAIELFNSMRERR-TTCHPDVVTYTSIMY 338

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           +    G  +  + V   M   GV  N ++YN LL  Y       +A E  + +  +  + 
Sbjct: 339 SYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNG-LR 397

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           PD+VSY  L++ +        A   FNEMR     P K+SY  L+ A+  +   K A  +
Sbjct: 398 PDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISL 457

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
             EM +D  ++ D+++ + L+    R   + +   I+   K  G   N   Y S
Sbjct: 458 LHEMEQDG-IQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNS 510



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 171/383 (44%), Gaps = 26/383 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+  +YNA+++A  + G  K+ + L  +M + G +PDV++ + ++  C R  +   +  
Sbjct: 432 KPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDI 491

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L      GI L    + S + +Y+  GD + A  +  +MR G      +   + +    
Sbjct: 492 ILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILIS--G 549

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S   G   +  + FE +L  +I+ + E             +Y++++  Y+ +G++++   
Sbjct: 550 SCKLGRYVESLKFFEDMLDLNIHLTKE-------------VYSSVICSYVKQGKLTEAAS 596

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
              +M+   +    PD +TYTT++ A    GS  RA  +  EM   G   + I  + L++
Sbjct: 597 TFNSMK---ETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLME 653

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
              +  Q ++  +L+ E     KI+ +  +Y  +I    ++ D   A      + +   +
Sbjct: 654 ALNKGGQPERVLQLI-EFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDS---S 709

Query: 355 PTKISYTTL---MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            + IS+ TL   +       + +   K+F +M+      V +  + +L+     +G   +
Sbjct: 710 LSSISFGTLNHILNFLGKCGRTESMMKLFYKMVTSCST-VGLSTYTILLRNLLIVGKWRK 768

Query: 412 AKRIIERMKENGFYPNVATYGSL 434
              +++ M++ G  P +  Y S+
Sbjct: 769 YVEVLQWMEDAGVCPTLYMYQSV 791


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 186/415 (44%), Gaps = 49/415 (11%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASR 108
           +++ S PD   YNA++      G+     +L   M     +PD  TYN +I+ LC R   
Sbjct: 126 VLAASGPDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRT 182

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
            + L  VLE +   G    + T+  L+ A                 R G +   K++ E+
Sbjct: 183 SNALA-VLEDMFRRGCLPDVVTYTILLEA--------------TCKRSGYKQAMKLLDEM 227

Query: 169 -------DLEDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
                  D+  Y+        EG  +D  E F K LP+                PN+  Y
Sbjct: 228 HDKGCAPDIVTYNVVLNGICQEGRVEDAME-FLKNLPS------------YGCEPNTVSY 274

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++KG     R  D  +++  M  +      P+ VT+  ++S L + G ++ A +VL +
Sbjct: 275 NIVLKGLFTAERWEDAEKLMEEMAHK---GCPPNVVTFNMLISFLCRRGLVEPAMEVLEQ 331

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M + G   N ++YN LL  +C+Q +I KA E +  M       PD+VSYN L+       
Sbjct: 332 MPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG-CYPDIVSYNTLLTALCRNG 390

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   A+   ++++ +G +P  ISY T++     + + K A ++ DEM     ++ DI+ +
Sbjct: 391 EVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEM-TSKGLQPDIITY 449

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           + +  G CR   +EEA R   ++++ G  P  A Y ++  G+   R+   A+ L+
Sbjct: 450 STIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLF 504



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 166/389 (42%), Gaps = 76/389 (19%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++  Y TL++G    GR S+ + +L  M R+      PD VTYT ++ A  K     +A
Sbjct: 164 PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRR---GCLPDVVTYTILLEATCKRSGYKQA 220

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EM   G   + +TYN++L G CQ+ +++ A E L+ +      EP+ VSYNI++ 
Sbjct: 221 MKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYG-CEPNTVSYNIVLK 279

Query: 331 GFI----------LIDDSAG-------------------------ALTFFNEMRARGIAP 355
           G            L+++ A                          A+    +M   G  P
Sbjct: 280 GLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTP 339

Query: 356 TKISYTTLMKAFALSSQPKLANKV-FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
             +SY  L+ AF    Q K+   + F E++       DIV++N L+   CR G V+ A  
Sbjct: 340 NSLSYNPLLHAFC--KQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIE 397

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++ ++K+ G  P + +Y ++ +G++ A K  EAL L  E+  +                 
Sbjct: 398 LLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSK----------------G 441

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           L+PD      +A    R     +A+     +++ GI P    Y  I + +          
Sbjct: 442 LQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLC--------- 492

Query: 535 SQARQDRRRERKRAAEAFKFWLG---LPN 560
                 +RRE   A + F + +    +PN
Sbjct: 493 ------KRRETHNAIDLFAYMISSGCMPN 515



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 29/295 (9%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVT-YTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
           G + D +R++ ++     N   P  V     ++  L  +G    AR+VLA         +
Sbjct: 81  GELDDALRLVDSLAGL--NPPSPAAVGPCAALIKKLCASGRTADARRVLA-----ASGPD 133

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
            + YN ++ GYC   Q+D A+ L+ +M     +EPD  +YN LI G      ++ AL   
Sbjct: 134 VMVYNAMVAGYCGAGQLDAARRLVADM----PVEPDAYTYNTLIRGLCGRGRTSNALAVL 189

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            +M  RG  P  ++YT L++A    S  K A K+ DEM  D     DIV +N+++ G C+
Sbjct: 190 EDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEM-HDKGCAPDIVTYNVVLNGICQ 248

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
            G VE+A   ++ +   G  PN  +Y  +  G+  A +  +A  L +E+           
Sbjct: 249 EGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEM----------- 297

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            A    P    P+    + L     R      A+E++  M ++G  PN   Y  +
Sbjct: 298 -AHKGCP----PNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPL 347



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 166/383 (43%), Gaps = 32/383 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G LP V  ++ ++   A     G  +++KL D   +   K   PDIV+        
Sbjct: 192 MFRRGCLPDVVTYTILLE--ATCKRSGYKQAMKLLD---EMHDKGCAPDIVT-------- 238

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN VLN     G+ +  ++    +  +G +P+ ++YN+++K    A R      ++E + 
Sbjct: 239 YNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMA 298

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    + TF  L++     G +E A  +++ M +       +     L  +  + +  
Sbjct: 299 HKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIH 358

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
              +   F +L            ++ +   P+   Y TL+      G V   + +L  ++
Sbjct: 359 KAME---FVEL------------MVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLK 403

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              D    P  ++Y TV+  L KAG    A ++L EMT  G+  + ITY+ +  G C++ 
Sbjct: 404 ---DKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCRED 460

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +I++A     ++  D  I P    YN ++ G     ++  A+  F  M + G  P + +Y
Sbjct: 461 RIEEAVRTFCKV-QDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTY 519

Query: 361 TTLMKAFALSSQPKLANKVFDEM 383
           T L++  A     K A ++F ++
Sbjct: 520 TILVEGLAYEGLVKEARELFAQL 542



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/303 (17%), Positives = 122/303 (40%), Gaps = 54/303 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   +N +++     G  +  +++ +QM ++G  P+ L+YN ++    +  + H  +  
Sbjct: 304 PNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEF 363

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +E ++  G    + ++ +L+ A    G++++A  ++  +++                   
Sbjct: 364 VELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKD------------------- 404

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                          K  +P    Y T++ G    G+  + + +
Sbjct: 405 -------------------------------KGCSPVLISYNTVIDGLTKAGKTKEALEL 433

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  +      PD +TY+T+ S L +   ++ A +   ++  +G+      YN +L G
Sbjct: 434 LDEMTSK---GLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLG 490

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C++ +   A +L   M     + P+  +Y IL++G         A   F ++ +RG+  
Sbjct: 491 LCKRRETHNAIDLFAYMISSGCM-PNESTYTILVEGLAYEGLVKEARELFAQLCSRGVVN 549

Query: 356 TKI 358
            K+
Sbjct: 550 KKL 552


>gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 200/455 (43%), Gaps = 64/455 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +  +G+ P + +++T+++ +      G + S+      V  V +       S +KPD+  
Sbjct: 65  LAETGHRPSLISYTTLLAAMTVQKQYGSLSSI------VSEVEQ-------SGTKPDSIF 111

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NAV+NA +  G  +  +Q   +M E G  P   TYN +IK    A +      +L+ +L
Sbjct: 112 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSALLDLML 171

Query: 121 E---MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           E   + +   + TF  LV A+     +E A  +V  M E       +        Y  + 
Sbjct: 172 EESNVDVRPNIRTFNVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYNTIATCYVQKG 231

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           E     + EV EK+            ++ +   PN R    ++ GY  EGRV D +R + 
Sbjct: 232 E-TVRAESEVVEKM------------VMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVR 278

Query: 238 AMRRQEDNAS--------------------------------HPDHVTYTTVVSALVKAG 265
            M+     A+                                  D +TY+TV++A   AG
Sbjct: 279 RMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAG 338

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            M++A QV  EM + GV  +   Y+IL KGY +  +  KA+ELL  +  +++  P+VV +
Sbjct: 339 YMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLIVESR--PNVVIF 396

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             +I G+        A+  FN+M   G++P   ++ TLM  +    QP  A +V  +M+R
Sbjct: 397 TTVISGWCSSGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVL-QMMR 455

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              VK +   + +L E +   GL +E+ + I  +K
Sbjct: 456 GFGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 490



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/425 (21%), Positives = 191/425 (44%), Gaps = 31/425 (7%)

Query: 33  KLFDVVVKRVRKFSDPDIV-----SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           KL +V+++R R      +      +  +P   +Y  +L A     +      +  ++ + 
Sbjct: 44  KLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSLSSIVSEVEQS 103

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G KPD + +N +I   + +      V  L ++ E+G+    +T+ +L+  Y   G  E +
Sbjct: 104 GTKPDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERS 163

Query: 148 ETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
             ++  M  E   DV   IR  ++   +   +   ++  EV  K+    + P        
Sbjct: 164 SALLDLMLEESNVDVRPNIRTFNVLVQAWCKKKKVEEAWEVVHKMEECGVRP-------- 215

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVR----MLGAMRRQEDNASHPDHVTYTTVVSALV 262
                ++  Y T+   Y+ +G   +TVR    ++  M  +E   + P+  T   VV    
Sbjct: 216 -----DTVTYNTIATCYVQKG---ETVRAESEVVEKMVMKEK--AKPNGRTCGIVVGGYC 265

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           + G +    + +  M  + V AN + +N L+ G+ + +  D   E+L  M  +  ++ DV
Sbjct: 266 REGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLM-KECNVKADV 324

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           ++Y+ +++ +        A   F EM   G+ P   +Y+ L K +  + +PK A ++ + 
Sbjct: 325 ITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLET 384

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           ++ + R   ++V +  ++ G+C  G +++A R+  +M + G  PN+ T+ +L  G    +
Sbjct: 385 LIVESRP--NVVIFTTVISGWCSSGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVK 442

Query: 443 KPGEA 447
           +P +A
Sbjct: 443 QPWKA 447



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 148/313 (47%), Gaps = 28/313 (8%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   YTTL+     + +      ++  +   E + + PD + +  V++A  ++G+M+ A
Sbjct: 72  PSLISYTTLLAAMTVQKQYGSLSSIVSEV---EQSGTKPDSIFFNAVINAFSESGNMEDA 128

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE--PDVVSYNIL 328
            Q L +M  +G+     TYN L+KGY    + +++  LL  M +++ ++  P++ ++N+L
Sbjct: 129 VQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSALLDLMLEESNVDVRPNIRTFNVL 188

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA-NKVFDEMLRDP 387
           +  +        A    ++M   G+ P  ++Y T+   +    +   A ++V ++M+   
Sbjct: 189 VQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKE 248

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPG- 445
           + K +     ++V GYCR G V +  R + RMKE     N+  + SL NG + +  + G 
Sbjct: 249 KAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGI 308

Query: 446 -EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            E L L KE    C VK + +   +           +++A +     A +  KA ++   
Sbjct: 309 DEVLTLMKE----CNVKADVITYST-----------VMNAWSS----AGYMEKAAQVFKE 349

Query: 505 MEEHGIPPNKTKY 517
           M + G+ P+   Y
Sbjct: 350 MVKAGVKPDAHAY 362



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A T F  +   G  P+ ISYTTL+ A  +  Q    + +  E +     K D + +N ++
Sbjct: 58  AQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSLSSIVSE-VEQSGTKPDSIFFNAVI 116

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP--GEALLLWKEIKERC 458
             +   G +E+A + + +MKE G  P  +TY +L  G  +A KP    ALL         
Sbjct: 117 NAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSALL--------- 167

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           ++  E  N D      ++P+    + L     +     +A E+V  MEE G+ P+   Y 
Sbjct: 168 DLMLEESNVD------VRPNIRTFNVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYN 221

Query: 519 KI 520
            I
Sbjct: 222 TI 223


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 121/521 (23%), Positives = 213/521 (40%), Gaps = 51/521 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+LP V+ +  +++     GD         F  + + + + +   +  + +     YN +
Sbjct: 269 GFLPTVETYGAIINGFCKKGD---------FKAIDRLLMEMNSRGLTVNVQ----VYNTI 315

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++A    G   K ++  + M E G KPD++TYN +I    R  +      +LE+ L  G+
Sbjct: 316 IDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGL 375

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENE----- 178
                ++  L+ AY   G  + A   +  M E G +         DL  Y +        
Sbjct: 376 MPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKP--------DLVTYGALVHGLVVA 427

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G+ D    + EK+L   +              P++ IY  LM G   + ++     +L  
Sbjct: 428 GEVDVALTIREKMLERGV-------------FPDAGIYNILMSGLCKKFKLPAAKLLLAE 474

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    D +  PD   Y T+V   ++ G++D AR++       G+    + YN ++KGYC+
Sbjct: 475 ML---DQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCK 531

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
              +  A   +  M     + PD  +Y+ +IDG++   D  GA   F EM      P  +
Sbjct: 532 FGMMKDAMACINRM-KKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVV 590

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +YT+L+  F        + K+F EM     V  ++V +++L+  +C+   + +A    E 
Sbjct: 591 TYTSLINGFCRKGDLHRSLKIFREMQACGLVP-NVVTYSILIGSFCKEAKLIDAASFFEE 649

Query: 419 MKENGFYPNVATYGSLANGISL--ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
           M  N   PN  T+  L NG S    R   E    ++E K+   +   G        P   
Sbjct: 650 MLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSA 709

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
               +L  L     +   FR AL++   M   G  P+   +
Sbjct: 710 AYNSILICLC----QYGMFRTALQLSNKMTSKGCIPDSVSF 746



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 176/406 (43%), Gaps = 32/406 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+   YN +++     G  +    LF ++   G  P V TY  +I   C +   K +   
Sbjct: 237 PNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRL 296

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++E +   G+T+ +  + +++ A    G +  A   ++ M E     CK     D+  Y+
Sbjct: 297 LME-MNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECG---CKP----DIVTYN 348

Query: 175 -----SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                S  +G   + D++ E+ L              K   PN   YT L+  Y  +G  
Sbjct: 349 TLISGSCRDGKVSEADQLLEQALG-------------KGLMPNKFSYTPLIHAYCKQGGY 395

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
                 L  M    +    PD VTY  +V  LV AG +D A  +  +M   GV  +   Y
Sbjct: 396 DRASNWLIEM---TERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIY 452

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           NIL+ G C++ ++  AK LL EM D + + PD   Y  L+DGFI   +   A   F    
Sbjct: 453 NILMSGLCKKFKLPAAKLLLAEMLDQS-VLPDAFVYATLVDGFIRNGNLDEARKLFELTI 511

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            +G+ P  + Y  ++K +      K A    + M +   +  D   ++ +++GY +   +
Sbjct: 512 EKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRM-KKRHLAPDEFTYSTVIDGYVKQHDL 570

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           + A+++   M +    PNV TY SL NG         +L +++E++
Sbjct: 571 DGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQ 616



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 122/524 (23%), Positives = 204/524 (38%), Gaps = 76/524 (14%)

Query: 38  VVKRVRKFSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFD-QMHEFGAK 90
           ++ R R FS+ ++V ++       P   A + V+ A ++ G  +K L+L+   +  +   
Sbjct: 103 LLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYF 162

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           PDV+  N ++ +  +  R  +   + + +LE+                 G GD  +    
Sbjct: 163 PDVIACNSLLNMLVKLGRIEIARKLYDEMLEID----------------GAGDRCVDNYS 206

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
              M +G   +CK   E  LE      EG    +D   +  +PN I              
Sbjct: 207 TCIMVKG---LCK---EGKLE------EGRKLIEDRWGQGCIPNII-------------- 240

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
                Y TL+ GY  +G   D     G     +     P   TY  +++   K G     
Sbjct: 241 ----FYNTLIDGYCKKG---DMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAI 293

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EM   G+  N   YN ++    +   I KA E +  M +    +PD+V+YN LI 
Sbjct: 294 DRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIE-CGCKPDIVTYNTLIS 352

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G       + A     +   +G+ P K SYT L+ A+        A+    EM      K
Sbjct: 353 GSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGH-K 411

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+V +  LV G    G V+ A  I E+M E G +P+   Y  L +G+    K   A LL
Sbjct: 412 PDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLL 471

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             E+                L   + PD  +   L D  +R     +A ++     E G+
Sbjct: 472 LAEM----------------LDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGM 515

Query: 511 PPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKF 554
            P    Y  + ++ + +    K A  A  +R ++R  A + F +
Sbjct: 516 NPGIVGYNAM-IKGYCKFGMMKDA-MACINRMKKRHLAPDEFTY 557



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 118/272 (43%), Gaps = 23/272 (8%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           Y++++  L ++        VL  M    +   R   +I+++ Y     ++KA EL   + 
Sbjct: 97  YSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVL 156

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI--SYTTLMKAFALSS 371
                 PDV++ N L++  + +     A   ++EM     A  +   +Y+T +    L  
Sbjct: 157 KTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCK 216

Query: 372 QPKL--ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           + KL    K+ ++      +  +I+ +N L++GYC+ G +E A  +   +K  GF P V 
Sbjct: 217 EGKLEEGRKLIEDRWGQGCIP-NIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVE 275

Query: 430 TYGSLANGISLARKPGEALLLWKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
           TYG++ NG     K G+    +K I +   E+   G          L  + ++ + + D 
Sbjct: 276 TYGAIINGFC---KKGD----FKAIDRLLMEMNSRG----------LTVNVQVYNTIIDA 318

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +     KA+E +  M E G  P+   Y  +
Sbjct: 319 RYKHGHIVKAVETIEGMIECGCKPDIVTYNTL 350


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/488 (22%), Positives = 214/488 (43%), Gaps = 73/488 (14%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           +P V A++T++    ++G     +  + + ++ ++ RK   P ++        AYN +L 
Sbjct: 340 VPCVYAYNTMIMGYGSAG-----KFDEAYSLLERQKRKGCIPSVI--------AYNCILT 386

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                GK ++ L++ D+M +  A P++ TYN++I +  +A      + V + + E G+  
Sbjct: 387 CLGRKGKVEEALRIHDEMRQ-DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFP 445

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRRDVCKIIRELDLEDYSSENEGDD 181
            + T   ++        L+ A +I   +         R  C +I  L          G  
Sbjct: 446 NIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLG-------RRGRV 498

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DD   ++EK+L +                PN  +YT+L++ +   GR  D  ++   M  
Sbjct: 499 DDAYSLYEKMLDSDQ-------------IPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVH 545

Query: 242 ------------------------------QEDNASH--PDHVTYTTVVSALVKAGSMDR 269
                                         +E  A    PD  +Y+ ++  LVKAG    
Sbjct: 546 RGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRE 605

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             ++  EM   G+  + + YN ++ G+C+  ++DKA +LL EM     ++P VV+Y  ++
Sbjct: 606 TYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKG-LQPTVVTYGSVV 664

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DG   ID    A   F E ++ G+    + Y++L+  F    +   A  + +E+++   +
Sbjct: 665 DGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG-L 723

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             +   WN L++   +   ++EA+   + MK     PN  TY  + NG+ + RK  +A +
Sbjct: 724 TPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFV 783

Query: 450 LWKEIKER 457
            W+E++++
Sbjct: 784 FWQEMQKQ 791



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 22/305 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  ++ +   L+  ++   ++ +   ++  MR+ +     P    YTT++ AL  A   D
Sbjct: 164 FGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFK---FRPAFSAYTTLIGALSAANRPD 220

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
               +  +M  IG  AN   +  L++ + ++ +ID A  LL EM  ++    D+V YN+ 
Sbjct: 221 PMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNS-FTADLVLYNVC 279

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ID F  +     A  FF+EM+A+G+ P  ++YTTL+     + +   A ++F+E+  +  
Sbjct: 280 IDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRS 339

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V   + A+N ++ GY   G  +EA  ++ER K  G  P+V  Y  +   +    K  EAL
Sbjct: 340 VPC-VYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEAL 398

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            +  E+++             D  P L     L+D L     +A     AL++   M+E 
Sbjct: 399 RIHDEMRQ-------------DAAPNLTTYNILIDMLC----KAGELEAALKVQDTMKEA 441

Query: 509 GIPPN 513
           G+ PN
Sbjct: 442 GLFPN 446



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 106/513 (20%), Positives = 215/513 (41%), Gaps = 80/513 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-------------ESVKLFDVVVKRVRKFSD 47
           M +  + P   A++T++  L+A+    P+              +V LF  +V+   +   
Sbjct: 194 MRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGR 253

Query: 48  PD--------IVSDS-KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            D        + S+S   D   YN  ++    +GK     + F +M   G  PD +TY  
Sbjct: 254 IDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTT 313

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I +  +A R    V + E +       C+  + +++  Y   G  + A ++++  R+ R
Sbjct: 314 LIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLE--RQKR 371

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
           +     +   +        +G  ++   + +++  ++              APN   Y  
Sbjct: 372 KGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA--------------APNLTTYNI 417

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM- 277
           L+      G +   +++   M+   +    P+ +T   ++  L KA  +D A  +   + 
Sbjct: 418 LIDMLCKAGELEAALKVQDTMK---EAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLD 474

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            ++  P +R T+  L+ G  ++ ++D A  L  +M D  +I P+VV Y  LI  F     
Sbjct: 475 HKVCSPDSR-TFCSLIDGLGRRGRVDDAYSLYEKMLDSDQI-PNVVVYTSLIQNFFKCGR 532

Query: 338 SAGALTFFNEM-----------------------------------RARGIAPTKISYTT 362
                  + EM                                   +A+G+ P   SY+ 
Sbjct: 533 KEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSI 592

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+     +   +   K+F EM ++  + +D++A+N +++G+C+ G V++A +++E MK  
Sbjct: 593 LIHGLVKAGFSRETYKLFYEM-KEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTK 651

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           G  P V TYGS+ +G++   +  EA +L++E K
Sbjct: 652 GLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 684



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 194/450 (43%), Gaps = 53/450 (11%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           V++ +RKF         +P  +AY  ++ A +   +P   L LF QM E G + +V  + 
Sbjct: 190 VIEMMRKFK-------FRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFT 242

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA---------- 147
            ++++ AR  R    + +L+ +     T  +  +   +  +   G +++A          
Sbjct: 243 TLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ 302

Query: 148 ---------ETIVQAMREGRR--DVCKIIRELDLE-------DYSS--ENEGDDDDDDEV 187
                     T++  + + RR  +  ++  ELDL         Y++     G     DE 
Sbjct: 303 GLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEA 362

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           +  L             +P   A N  I T L +    +G+V + +R+   MR+     +
Sbjct: 363 YSLL-----ERQKRKGCIPSVIAYNC-ILTCLGR----KGKVEEALRIHDEMRQD----A 408

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P+  TY  ++  L KAG ++ A +V   M   G+  N +T NI++   C+  ++D+A  
Sbjct: 409 APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACS 468

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +   + D     PD  ++  LIDG         A + + +M      P  + YT+L++ F
Sbjct: 469 IFLGL-DHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNF 527

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               + +  +K++ EM+       D++  N  ++   + G VE+ + + E +K  G  P+
Sbjct: 528 FKCGRKEDGHKIYKEMVHRG-CSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPD 586

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKER 457
           V +Y  L +G+  A    E   L+ E+KE+
Sbjct: 587 VRSYSILIHGLVKAGFSRETYKLFYEMKEQ 616



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 169/412 (41%), Gaps = 60/412 (14%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           SD  P+   Y +++      G+ +   +++ +M   G  PD++  N  +    +A     
Sbjct: 511 SDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEK 570

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              + E I   G+   + ++  L+   V  G       +   M+E           LD+ 
Sbjct: 571 GRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGL-------HLDVL 623

Query: 172 DYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
            Y++  +G       D+ ++ L            +  K   P    Y +++ G     R+
Sbjct: 624 AYNTVIDGFCKSGKVDKAYQLL----------EEMKTKGLQPTVVTYGSVVDGLAKIDRL 673

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D   ML      +      + V Y++++    K G +D A  +L E+ + G+  N  T+
Sbjct: 674 -DEAYML--FEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTW 730

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N LL    +  +ID+A+   + M  + K  P+ ++Y+I+I+G  +I     A  F+ EM+
Sbjct: 731 NCLLDALVKAEEIDEAQVCFQNM-KNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQ 789

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            +G+ P  I+YTT                                    ++ G  + G V
Sbjct: 790 KQGLKPNNITYTT------------------------------------MIAGLAKAGNV 813

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CEV 460
            EA+ + +R K +G  P+ A Y ++  G+S A K  +A ++++E + + C V
Sbjct: 814 MEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRV 865



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 143/385 (37%), Gaps = 70/385 (18%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
            G +P V+++S ++  L  +G     E+ KLF  + ++               D  AYN 
Sbjct: 581 QGLVPDVRSYSILIHGLVKAG--FSRETYKLFYEMKEQGLHL-----------DVLAYNT 627

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           V++     GK  K  QL ++M   G +P V+TY  ++   A+  R      + E    +G
Sbjct: 628 VIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIG 687

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           + L +  + SL+    GFG +            GR D   +I E                
Sbjct: 688 VDLNVVIYSSLID---GFGKV------------GRIDEAYLILE---------------- 716

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
                               L+ K   PNS  +  L+   +    + +       M+  +
Sbjct: 717 -------------------ELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLK 757

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P+ +TY+ +++ L      ++A     EM + G+  N ITY  ++ G  +   + 
Sbjct: 758 ---CSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVM 814

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A+ L         + PD   YN +I+G    + +  A   F E R +G      +   L
Sbjct: 815 EARGLFDRFKASGGV-PDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVL 873

Query: 364 MKAFALS---SQPKLANKVFDEMLR 385
           + A   +    Q  +   V  EM +
Sbjct: 874 LDALHKADCLEQAAIVGAVLREMAK 898


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 237/567 (41%), Gaps = 93/567 (16%)

Query: 8   PHVKAWSTVV-SRLAASGDDGPVESVKLFDVV--VKRVRKFSDPDIVSDSKPDTAAYNAV 64
           P   A ++VV + L+   D G ++     D V  V RVR+   P       P+T   N +
Sbjct: 116 PRRSALASVVDTLLSVLADRGLLD-----DAVRAVARVRELRVP-------PNTRTCNHI 163

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           L   A     +   +LF+Q+      P+V T+N++I    +         +  R+ EMG 
Sbjct: 164 LLRLARDRSGRLVRRLFEQL----PAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGC 219

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + TF SL+  Y   G+L+  E +V+ MR   R  CK     D+  Y++         
Sbjct: 220 LPDVVTFNSLIDGYGKCGELDEVEQLVEEMR---RSGCKA----DVVTYNAL-------- 264

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
              F K             +  +    N   ++T +  +  EG V + +++   MR +  
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVR-- 322

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
                +  TYT ++    KAG +D A  +L EM R GVP N +TY +L+ G C++ ++ +
Sbjct: 323 -GMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAE 381

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR------------- 351
           A+++LR M + A +  + + Y  LI G  +  +S  AL   +EM+ +             
Sbjct: 382 AEDVLR-MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440

Query: 352 ----------------------GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
                                 G+ P  I YTT+M A   S +   A  +  ++L D   
Sbjct: 441 QGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKIL-DSGF 499

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           + +++ +  L++G C+ G ++EA     +M++ G  PNV  Y +L +G+       EA+ 
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 450 LWKEIKERCE--------------VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           L+ E+  +                +K+  ++    L   +      LD     C  + F 
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619

Query: 496 R-----KALEIVACMEEHGIPPNKTKY 517
                 +A E+ + M  HGI P++  Y
Sbjct: 620 NLNMMPEAREVFSEMIGHGIAPDRAVY 646



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 210/476 (44%), Gaps = 48/476 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G LP V  +++++      G+   VE +      V+ +R+       S  K D   YNA+
Sbjct: 218 GCLPDVVTFNSLIDGYGKCGELDEVEQL------VEEMRR-------SGCKADVVTYNAL 264

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARA-SRKHLLVFVLERILEM 122
           +N     G+ +     F  M   G   +V+T++  +   C     R+ + +F   R+   
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRV--R 322

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGR-----------RDVCKIIRELDL 170
           G+ L   T+  L+      G L+ A  ++  M R+G              +CK  +  + 
Sbjct: 323 GMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEA 382

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNS--INPSSEPPL------LPKTFAPNSRIYTTLMKG 222
           ED     E      +E+    L +   +N +SE  L        K    +  +Y  L++G
Sbjct: 383 EDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQG 442

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
             N  ++ +   +L  M   +++   P+++ YTT++ A  K+G +  A  +L ++   G 
Sbjct: 443 LCNVHKLDEAKSLLTKM---DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGF 499

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N ITY  L+ G C+   ID+A     +M  D  ++P+V +Y  L+DG         A+
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKM-RDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             FNEM  +G++  K+ YT L+  +        A  +  +M+ D  +++D+  +   + G
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMI-DSGLQLDLFCYTCFISG 617

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG---EALLLWKEIK 455
           +C + ++ EA+ +   M  +G  P+ A Y  L   IS  +K G   EA+ L  E++
Sbjct: 618 FCNLNMMPEAREVFSEMIGHGIAPDRAVYNCL---ISKYQKLGNLEEAISLQDEME 670



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 149/328 (45%), Gaps = 25/328 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN   +  ++     EG +++   +     R ++    PD VT+ +++    K G +D 
Sbjct: 185 APNVFTFNIVIDFLCKEGELAEARSLFS---RMKEMGCLPDVVTFNSLIDGYGKCGELDE 241

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             Q++ EM R G  A+ +TYN L+  +C+  +++ A      M  +  +  +VV+++  +
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREG-VMANVVTFSTFV 300

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           D F        A+  F +MR RG+A  + +YT L+     + +   A  + DEM+R   V
Sbjct: 301 DAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG-V 359

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
            +++V + +LV+G C+   V EA+ ++  M++ G   N   Y +L +G  + +   +AL 
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG 419

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L  E+K +                 L+ D  L  AL           +A  ++  M+E G
Sbjct: 420 LLSEMKNK----------------GLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 510 IPPNKTKYKKIYVEMHSRMFTSKHASQA 537
           + PN      IY  M    F S    +A
Sbjct: 464 LEPNYI----IYTTMMDACFKSGKVPEA 487



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 166/413 (40%), Gaps = 53/413 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M R G + +V  +ST V    A   +G V E++KLF  +  RVR  +  +          
Sbjct: 284 MKREGVMANVVTFSTFVD---AFCKEGLVREAMKLFAQM--RVRGMALNEFT-------- 330

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y  +++     G+    + L D+M   G   +V+TY V++    +  +      VL  +
Sbjct: 331 -YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+      + +L+  +    + E A  ++  M+           ELD+  Y +  +G
Sbjct: 390 EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL-------ELDISLYGALIQG 442

Query: 180 -----DDDDDDEVFEKLLPNSINP--------------SSEPP--------LLPKTFAPN 212
                  D+   +  K+  + + P              S + P        +L   F PN
Sbjct: 443 LCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN 502

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  L+ G    G + + +     MR   D    P+   YT +V  L K G ++ A Q
Sbjct: 503 VITYCALIDGLCKAGSIDEAISHFNKMR---DLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +  EM   G+  +++ Y  LL GY +Q  +  A  L  +M D   ++ D+  Y   I GF
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG-LQLDLFCYTCFISGF 618

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             ++    A   F+EM   GIAP +  Y  L+  +      + A  + DEM R
Sbjct: 619 CNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 205/458 (44%), Gaps = 45/458 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P+V+A++ ++S L  SG  G  ++  LFD + +           +   P    
Sbjct: 279 MKRDGCSPNVRAFTFLISGLCKSGRVG--DARLLFDAMPQ-----------NGVVPSVMT 325

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YNA++   + LG+    L++ + M + G  PD  TYN +I  LC + + +     +L   
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA--EELLNNA 383

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV---CKIIRELDLEDYSSE 176
           ++ G T  + TF +L+  Y       +AE    A+R   + +   CK    LDL+ +   
Sbjct: 384 VKEGFTPTVVTFTNLINGYC------MAEKFDDALRMKNKMMSSKCK----LDLQVFGKL 433

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                  D     K L N I+ +           PN   YT+++ GY   G+V   + +L
Sbjct: 434 INSLIKKDRLKEAKELLNEISANG--------LVPNVITYTSIIDGYCKSGKVDIALEVL 485

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M R   +   P+  TY +++  LVK   + +A  +L +M + G+  N ITY  LL+G 
Sbjct: 486 KMMER---DGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQ 542

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C +   D A  L  EM +   ++PD  +Y +L D       +  A +F      +G+A T
Sbjct: 543 CDEHDFDNAFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALT 598

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           K+ YTTL+  F+ +     A  + + M+ D     D   +++L+   C+   + EA  I+
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEALPIL 657

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++M   G    +  Y  L + +    K   A  ++ E+
Sbjct: 658 DQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEM 695



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 200/496 (40%), Gaps = 49/496 (9%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDSK-PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           + S+  FD+     R +S   +V D   PDT  YN ++ +    G      + F  + E 
Sbjct: 155 LRSLARFDMTEYMGRVYSQ--LVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEG 212

Query: 88  GAKPDVLTYNVMIKLCARAS--RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           G +P+  T N ++    R    RK   +F++     M +  C     S      G  D +
Sbjct: 213 GLEPETFTCNALVLGYCRTGELRKACWLFLM-----MPLMGCQRNEYSYTILIQGLCDAK 267

Query: 146 IAETIVQAMREGRRDVCK-IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
                +      +RD C   +R            G   D   +F+ +  N + PS     
Sbjct: 268 CVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPS----- 322

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                      Y  ++ GY   GR++D +++   M   E N  HPD  TY T++  L   
Sbjct: 323 --------VMTYNAMIVGYSKLGRMNDALKIKELM---EKNGCHPDDWTYNTLIYGLCDQ 371

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
            + + A ++L    + G     +T+  L+ GYC   + D A  +  +M   +K + D+  
Sbjct: 372 KT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM-SSKCKLDLQV 429

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +  LI+  I  D    A    NE+ A G+ P  I+YT+++  +  S +  +A +V   M 
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           RD   + +   +N L+ G  +   + +A  ++ +M+++G  PNV TY +L  G       
Sbjct: 490 RDG-CQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDF 548

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
             A  L++ +++                  LKPDE     L D   +A    +A E  + 
Sbjct: 549 DNAFRLFEMMEQN----------------GLKPDEHAYAVLTDALCKAG---RAEEAYSF 589

Query: 505 MEEHGIPPNKTKYKKI 520
           +   G+   K  Y  +
Sbjct: 590 IVRKGVALTKVYYTTL 605



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 116/538 (21%), Positives = 206/538 (38%), Gaps = 110/538 (20%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           KL + ++K+ R     +++++       P+   Y ++++     GK    L++   M   
Sbjct: 432 KLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERD 491

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G +P+  TYN ++    +  + H  + +L ++ + GI   + T+ +L+       D + A
Sbjct: 492 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 551

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP---- 203
             + + M                       E +    DE    +L +++  +        
Sbjct: 552 FRLFEMM-----------------------EQNGLKPDEHAYAVLTDALCKAGRAEEAYS 588

Query: 204 -LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
            ++ K  A     YTTL+ G+   G       ++    R  D    PD  TY+ ++ AL 
Sbjct: 589 FIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLI---ERMIDEGCTPDSYTYSVLLHALC 645

Query: 263 KA-----------------------------------GSMDRARQVLAEMTRIGVPANRI 287
           K                                    G  D A+++  EMT  G   +  
Sbjct: 646 KQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSAT 705

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY + +  YC++ +++ A++L+ +M  +  + PDVV+YNILIDG   +     A +    
Sbjct: 706 TYTVFINSYCKEGRLEDAEDLILKMEREG-VAPDVVTYNILIDGCGHMGYIDRAFSTLKR 764

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA-WNMLVEGYCRM 406
           M      P   +Y  L+K     +   + +             VD    WN L+E     
Sbjct: 765 MVGASCEPNYWTYCLLLKHLLKGNLAYVRS-------------VDTSGMWN-LIE----- 805

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
             ++   +++ERM ++G  P V TY SL  G   A +  EA LL                
Sbjct: 806 --LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLL---------------- 847

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            D      L P+E++   L   C    FF KAL  V+ M E G  P    Y+ + V +
Sbjct: 848 LDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGL 905



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 201/510 (39%), Gaps = 71/510 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P+   Y  +L    +        +LF+ M + G KPD   Y V+   LC     +    F
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 589

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++ +    G+ L    + +L+  +   G+ + A T+++ M +                  
Sbjct: 590 IVRK----GVALTKVYYTTLIDGFSKAGNTDFAATLIERMID------------------ 627

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI----YTTLMKGYMNEGRVS 230
            E    D     V    L      +   P+L +      +     YT L+   + EG+  
Sbjct: 628 -EGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHD 686

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              RM   M     +   P   TYT  +++  K G ++ A  ++ +M R GV  + +TYN
Sbjct: 687 HAKRMYNEM---TSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 743

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID-------GFILIDDSAG--- 340
           IL+ G      ID+A   L+ M   A  EP+  +Y +L+         ++   D++G   
Sbjct: 744 ILIDGCGHMGYIDRAFSTLKRMV-GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWN 802

Query: 341 ------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKVDI 393
                        M   G+ PT  +Y++L+  F  + + + A  + D M  +      DI
Sbjct: 803 LIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDI 862

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             + +L++  C     E+A   +  M E GF P + +Y  L  G+      G+    +++
Sbjct: 863 --YTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLC---NEGD----FEK 913

Query: 454 IKER-CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           +K   C++ + G N           DE     L D  ++A +     ++++ ME+     
Sbjct: 914 VKSLFCDLLELGYN----------HDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCI 963

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQARQDRR 542
           +   Y  +  +MH    +S   S+ R++ R
Sbjct: 964 SSQTYALVTNKMHE--VSSSLVSEVREEAR 991



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 123/269 (45%), Gaps = 14/269 (5%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM----LGAMRRQEDNASHPDHVTYTTVVS 259
           LL +  AP    Y  L+   +N    ++ +R+    + A+RR            Y   + 
Sbjct: 99  LLSRRRAPAQ--YERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALR 156

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           +L +    +   +V +++ + G+  + +TYN ++K YC++  +  A    R + +   +E
Sbjct: 157 SLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGG-LE 215

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+  + N L+ G+    +   A   F  M   G    + SYT L++    +   + A  +
Sbjct: 216 PETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVL 275

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F  M RD     ++ A+  L+ G C+ G V +A+ + + M +NG  P+V TY ++  G S
Sbjct: 276 FLMMKRDG-CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 334

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNAD 468
              +  +AL    +IKE  E  K G + D
Sbjct: 335 KLGRMNDAL----KIKELME--KNGCHPD 357



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 125/308 (40%), Gaps = 47/308 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG+ P    ++  ++     G     E     D+++K  R+   PD+V+        
Sbjct: 695 MTSSGHKPSATTYTVFINSYCKEGRLEDAE-----DLILKMEREGVAPDVVT-------- 741

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF------ 114
           YN +++ C ++G   +      +M     +P+  TY +++K   + +  ++         
Sbjct: 742 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW 801

Query: 115 ----------VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
                     +LER+++ G+   +TT+ SL+A +   G LE A  ++  M        + 
Sbjct: 802 NLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNED 861

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           I  L ++            D + FEK L + ++  SE       F P    Y  L+ G  
Sbjct: 862 IYTLLIKCCC---------DTKFFEKAL-SFVSIMSECG-----FQPQLESYRLLVVGLC 906

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           NEG       +   +   E   +H D V +  +   L+KAG +D   Q+L+ M +     
Sbjct: 907 NEGDFEKVKSLFCDL--LELGYNH-DEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCI 963

Query: 285 NRITYNIL 292
           +  TY ++
Sbjct: 964 SSQTYALV 971


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 185/405 (45%), Gaps = 20/405 (4%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           + +P        L + A   +    + L +QM  FG   +  T N++I    R S  H  
Sbjct: 81  NPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFA 140

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           V VL ++ ++GI     TF +L+      G ++ A  +   M  GR  +   +    L D
Sbjct: 141 VSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEM-AGRDAMPNTVTFTILVD 199

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              + +G   +   VFE +    + P             N   Y  LM GY     ++D 
Sbjct: 200 VLCK-KGMVSEARCVFETMTEKGVEP-------------NIYTYNALMNGYCLRLEMNDA 245

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            ++   M  +      P   +Y+ +++   K+  +D A+ +L +M+   +  N +TYN L
Sbjct: 246 SKVFEIMVGK---GCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTL 302

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           ++G C    + +A+EL ++M     + P++ +Y+IL+DG         AL     M+ R 
Sbjct: 303 MQGLCHASSLLEAQELFKKMCSSGML-PNLRTYSILLDGLCKHGHLEEALKLLTSMQERK 361

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  + Y  L++   ++ + ++A ++F ++  +  ++  +  +N++++G  + GL +EA
Sbjct: 362 LEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANG-IRPSVRTYNIMIKGLLKEGLSDEA 420

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            ++  +M+++GF P+  +Y  +  G    + P  A+ L  E+  R
Sbjct: 421 YKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGR 465



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 134/273 (49%), Gaps = 21/273 (7%)

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
            +H D+ T   ++++L +   +  A  VL++M ++G+  + +T+  L+ G C + +I +A
Sbjct: 117 VAHNDY-TLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEA 175

Query: 306 KELLREMAD-DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
            EL  EMA  DA   P+ V++ IL+D        + A   F  M  +G+ P   +Y  LM
Sbjct: 176 VELFNEMAGRDAM--PNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALM 233

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             + L  +   A+KVF E++        + ++++L+ GYC+   ++EAK ++ +M E   
Sbjct: 234 NGYCLRLEMNDASKVF-EIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKEL 292

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
            PN  TY +L  G+  A    EA  L+K++              S + P L+    LLD 
Sbjct: 293 IPNTVTYNTLMQGLCHASSLLEAQELFKKM------------CSSGMLPNLRTYSILLDG 340

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           L     +     +AL+++  M+E  + P+   Y
Sbjct: 341 LC----KHGHLEEALKLLTSMQERKLEPDIVLY 369



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 175/377 (46%), Gaps = 58/377 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P    ++T+++ L   G     E+V+LF+ +  R           D+ P+T  
Sbjct: 147 MFKLGIQPDSVTFTTLINGLCNEGRIK--EAVELFNEMAGR-----------DAMPNTVT 193

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCAR-----ASRKHLLVF 114
           +  +++     G   +   +F+ M E G +P++ TYN ++   C R     AS+      
Sbjct: 194 FTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASK------ 247

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL--DLED 172
           V E ++  G    + ++  L+  Y     ++ A+ ++  M E         +EL  +   
Sbjct: 248 VFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSE---------KELIPNTVT 298

Query: 173 YSSENEGDDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y++  +G        +  E+F+K+  + +              PN R Y+ L+ G    G
Sbjct: 299 YNTLMQGLCHASSLLEAQELFKKMCSSGM-------------LPNLRTYSILLDGLCKHG 345

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            + + +++L +M+ ++     PD V Y  ++  +  AG ++ A+++ +++   G+  +  
Sbjct: 346 HLEEALKLLTSMQERK---LEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVR 402

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYNI++KG  ++   D+A +L R+M DD  + PD  SYN++I GF+   D + A+   +E
Sbjct: 403 TYNIMIKGLLKEGLSDEAYKLFRKMEDDGFL-PDSCSYNVIIQGFLQNQDPSTAIQLIDE 461

Query: 348 MRARGIAPTKISYTTLM 364
           M  R  +    ++  L+
Sbjct: 462 MVGRRFSADSSTFKMLL 478


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 128/241 (53%), Gaps = 5/241 (2%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y+TLM G  NEGR+ + V +L  M+ +    + P+ V +  ++SAL K G + RA +++ 
Sbjct: 38  YSTLMHGLCNEGRIDEAVSLLDEMQVE---GTFPNPVAFNVLISALCKKGDLSRASKLVD 94

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   G   N +TYN L+ G C + ++DKA  LL  M  + K  P+ +++  L+DGF+  
Sbjct: 95  NMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVAN-KCVPNDITFGTLVDGFVKH 153

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             +   +     +  +G    + SY++L+       + +   +++ EM+ +   K + + 
Sbjct: 154 GRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMV-EKGCKPNTIV 212

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ L++G CR G  +EAK  +  MK  G  PN  TY SL  G   A    +A+L+WKE+ 
Sbjct: 213 YSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMT 272

Query: 456 E 456
           +
Sbjct: 273 D 273



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 176/399 (44%), Gaps = 30/399 (7%)

Query: 36  DVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
           D  V+  R  SD + V+D       Y+ +++   N G+  + + L D+M   G  P+ + 
Sbjct: 17  DQAVEVFRGMSDRNCVADG----YTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVA 72

Query: 96  YNVMIK-LCARA--SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           +NV+I  LC +   SR   LV   + +   G      T+ SLV      G L+ A +++ 
Sbjct: 73  FNVLISALCKKGDLSRASKLV---DNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLN 129

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
            M   +     I     ++ +       D     V                L  K +  N
Sbjct: 130 RMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLV---------------SLEEKGYRGN 174

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y++L+ G   EG+    +++   M  +      P+ + Y+ ++  L + G  D A++
Sbjct: 175 EFSYSSLISGLFKEGKGEHGMQLWKEMVEK---GCKPNTIVYSALIDGLCREGKPDEAKE 231

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
            L EM   G   N  TY+ L+ GY +   I KA  + +EM D+       V Y+ILI+G 
Sbjct: 232 YLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDN-DCNHHEVCYSILINGL 290

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKV 391
                   AL  + +M +RGI    ++Y++++  F  +   +   K+F++ML  +P+++ 
Sbjct: 291 CKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQP 350

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           D+V +N+L+  +C    V  A  I+  M + G  P+  T
Sbjct: 351 DVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFIT 389



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 18/264 (6%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           +V AL + G++D+A +V   M+     A+  TY+ L+ G C + +ID+A  LL EM  + 
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
              P+ V++N+LI       D + A    + M  +G  P +++Y +L+    L  +   A
Sbjct: 66  TF-PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKA 124

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             + + M+ +  V  DI  +  LV+G+ + G   +  R++  ++E G+  N  +Y SL +
Sbjct: 125 MSLLNRMVANKCVPNDI-TFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLIS 183

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+    K    + LWKE+ E+                  KP+  +  AL D   R     
Sbjct: 184 GLFKEGKGEHGMQLWKEMVEK----------------GCKPNTIVYSALIDGLCREGKPD 227

Query: 497 KALEIVACMEEHGIPPNKTKYKKI 520
           +A E +  M+  G  PN   Y  +
Sbjct: 228 EAKEYLIEMKNKGHTPNSFTYSSL 251



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 161/386 (41%), Gaps = 33/386 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+  A++ ++S L   GD             + R  K  D   +    P+   
Sbjct: 61  MQVEGTFPNPVAFNVLISALCKKGD-------------LSRASKLVDNMFLKGCVPNEVT 107

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     GK  K + L ++M      P+ +T+  ++    +  R    V VL  + 
Sbjct: 108 YNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLE 167

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G      ++ SL++     G  E    + + M E       I+    ++    E +  
Sbjct: 168 EKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK-- 225

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               DE  E L+           +  K   PNS  Y++LM GY   G +   + +   M 
Sbjct: 226 ---PDEAKEYLIE----------MKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEM- 271

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              DN  +   V Y+ +++ L K G +  A  V  +M   G+  + + Y+ ++ G+C   
Sbjct: 272 --TDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQ 329

Query: 301 QIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +++  +L  +M   + K++PDVV+YNIL++ F   +  + A+   N M  +G  P  I+
Sbjct: 330 LVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFIT 389

Query: 360 YTTLMKAFALSSQPKLANKVF-DEML 384
               +K    +  P    + F DE++
Sbjct: 390 CDIFLKTLRDNMDPPQDGREFLDELV 415


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 197/438 (44%), Gaps = 45/438 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P+V+A++ ++S L  SG  G  ++  LFD + +           +   P    
Sbjct: 279 MKRDGCSPNVRAFTFLISGLCKSGRVG--DARLLFDAMPQ-----------NGVVPSVMT 325

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YNA++   + LG+    L++ + M + G  PD  TYN +I  LC + + +     +L   
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA--EELLNNA 383

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV---CKIIRELDLEDYSSE 176
           ++ G T  + TF +L+  Y       +AE    A+R   + +   CK    LDL+ +   
Sbjct: 384 VKEGFTPTVVTFTNLINGYC------MAEKFDDALRMKNKMMSSKCK----LDLQVFGKL 433

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                  D     K L N I+ +           PN   YT+++ GY   G+V   + +L
Sbjct: 434 INSLIKKDRLKEAKELLNEISANG--------LVPNVITYTSIIDGYCKSGKVDIALEVL 485

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M R   +   P+  TY +++  LVK   + +A  +L +M + G+  N ITY  LL+G 
Sbjct: 486 KMMER---DGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQ 542

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C +   D A  L  EM +   ++PD  +Y +L D       +  A +F      +G+A T
Sbjct: 543 CDEHDFDNAFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALT 598

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           K+ YTTL+  F+ +     A  + + M+ D     D   +++L+   C+   + EA  I+
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEALPIL 657

Query: 417 ERMKENGFYPNVATYGSL 434
           ++M   G    +  Y  L
Sbjct: 658 DQMSLRGIKCTIFAYTIL 675



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 116/538 (21%), Positives = 206/538 (38%), Gaps = 110/538 (20%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           KL + ++K+ R     +++++       P+   Y ++++     GK    L++   M   
Sbjct: 432 KLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERD 491

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G +P+  TYN ++    +  + H  + +L ++ + GI   + T+ +L+       D + A
Sbjct: 492 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 551

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP---- 203
             + + M                       E +    DE    +L +++  +        
Sbjct: 552 FRLFEMM-----------------------EQNGLKPDEHAYAVLTDALCKAGRAEEAYS 588

Query: 204 -LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
            ++ K  A     YTTL+ G+   G       ++    R  D    PD  TY+ ++ AL 
Sbjct: 589 FIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLI---ERMIDEGCTPDSYTYSVLLHALC 645

Query: 263 KA-----------------------------------GSMDRARQVLAEMTRIGVPANRI 287
           K                                    G  D A+++  EMT  G   +  
Sbjct: 646 KQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSAT 705

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY + +  YC++ +++ A++L+ +M  +  + PDVV+YNILIDG   +     A +    
Sbjct: 706 TYTVFINSYCKEGRLEDAEDLILKMEREG-VAPDVVTYNILIDGCGHMGYIDRAFSTLKR 764

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA-WNMLVEGYCRM 406
           M      P   +Y  L+K     +   + +             VD    WN L+E     
Sbjct: 765 MVGASCEPNYWTYCLLLKHLLKGNLAYVRS-------------VDTSGMWN-LIE----- 805

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
             ++   +++ERM ++G  P V TY SL  G   A +  EA LL                
Sbjct: 806 --LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLL---------------- 847

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
            D      L P+E++   L   C    FF KAL  V+ M E G  P    Y+ + V +
Sbjct: 848 LDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGL 905



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 113/496 (22%), Positives = 200/496 (40%), Gaps = 49/496 (9%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDSK-PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           + S+  FD+     R +S   +V D   PDT  YN ++ +    G      + F  + E 
Sbjct: 155 LRSLARFDMTEYMGRVYSQ--LVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEG 212

Query: 88  GAKPDVLTYNVMIKLCARAS--RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           G +P+  T N ++    R    RK   +F++     M +  C     S      G  + +
Sbjct: 213 GLEPETFTCNALVLGYCRTGELRKACWLFLM-----MPLMGCQRNEYSYTILIQGLCEAK 267

Query: 146 IAETIVQAMREGRRDVCK-IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
                +      +RD C   +R            G   D   +F+ +  N + PS     
Sbjct: 268 CVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPS----- 322

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                      Y  ++ GY   GR++D +++   M   E N  HPD  TY T++  L   
Sbjct: 323 --------VMTYNAMIVGYSKLGRMNDALKIKELM---EKNGCHPDDWTYNTLIYGLCDQ 371

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
            + + A ++L    + G     +T+  L+ GYC   + D A  +  +M   +K + D+  
Sbjct: 372 KT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM-SSKCKLDLQV 429

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +  LI+  I  D    A    NE+ A G+ P  I+YT+++  +  S +  +A +V   M 
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           RD   + +   +N L+ G  +   + +A  ++ +M+++G  PNV TY +L  G       
Sbjct: 490 RDG-CQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDF 548

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
             A  L++ +++                  LKPDE     L D   +A    +A E  + 
Sbjct: 549 DNAFRLFEMMEQN----------------GLKPDEHAYAVLTDALCKAG---RAEEAYSF 589

Query: 505 MEEHGIPPNKTKYKKI 520
           +   G+   K  Y  +
Sbjct: 590 IVRKGVALTKVYYTTL 605



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 201/510 (39%), Gaps = 71/510 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P+   Y  +L    +        +LF+ M + G KPD   Y V+   LC     +    F
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 589

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++ +    G+ L    + +L+  +   G+ + A T+++ M +                  
Sbjct: 590 IVRK----GVALTKVYYTTLIDGFSKAGNTDFAATLIERMID------------------ 627

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI----YTTLMKGYMNEGRVS 230
            E    D     V    L      +   P+L +      +     YT L+   + EG+  
Sbjct: 628 -EGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHD 686

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              RM   M     +   P   TYT  +++  K G ++ A  ++ +M R GV  + +TYN
Sbjct: 687 HAKRMYNEM---TSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 743

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID-------GFILIDDSAG--- 340
           IL+ G      ID+A   L+ M   A  EP+  +Y +L+         ++   D++G   
Sbjct: 744 ILIDGCGHMGYIDRAFSTLKRMV-GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWN 802

Query: 341 ------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKVDI 393
                        M   G+ PT  +Y++L+  F  + + + A  + D M  +      DI
Sbjct: 803 LIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDI 862

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             + +L++  C     E+A   +  M E GF P + +Y  L  G+      G+    +++
Sbjct: 863 --YTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLC---NEGD----FEK 913

Query: 454 IKER-CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           +K   C++ + G N           DE     L D  ++A +     ++++ ME+     
Sbjct: 914 VKSLFCDLLELGYN----------HDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCI 963

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQARQDRR 542
           +   Y  +  +MH    +S   S+ R++ R
Sbjct: 964 SSQTYALVTNKMHE--VSSSLVSEVREEAR 991



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 120/258 (46%), Gaps = 9/258 (3%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM----LGAMRRQEDNASHPDHVTYTTVVS 259
           LL +  AP    Y  L+   +N    ++ +R+    + A+RR            Y   + 
Sbjct: 99  LLSRRRAPAQ--YERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALR 156

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
           +L +    +   +V +++ + G+  + +TYN ++K YC++  +  A    R + +   +E
Sbjct: 157 SLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGG-LE 215

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P+  + N L+ G+    +   A   F  M   G    + SYT L++    +   + A  +
Sbjct: 216 PETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVL 275

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F  M RD     ++ A+  L+ G C+ G V +A+ + + M +NG  P+V TY ++  G S
Sbjct: 276 FLMMKRDG-CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 334

Query: 440 LARKPGEALLLWKEIKER 457
              +  +AL + KE+ E+
Sbjct: 335 KLGRMNDALKI-KELMEK 351



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 125/308 (40%), Gaps = 47/308 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG+ P    ++  ++     G     E     D+++K  R+   PD+V+        
Sbjct: 695 MTSSGHKPSATTYTVFINSYCKEGRLEDAE-----DLILKMEREGVAPDVVT-------- 741

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF------ 114
           YN +++ C ++G   +      +M     +P+  TY +++K   + +  ++         
Sbjct: 742 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW 801

Query: 115 ----------VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
                     +LER+++ G+   +TT+ SL+A +   G LE A  ++  M        + 
Sbjct: 802 NLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNED 861

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           I  L ++            D + FEK L + ++  SE       F P    Y  L+ G  
Sbjct: 862 IYTLLIKCCC---------DTKFFEKAL-SFVSIMSECG-----FQPQLESYRLLVVGLC 906

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           NEG       +   +   E   +H D V +  +   L+KAG +D   Q+L+ M +     
Sbjct: 907 NEGDFEKVKSLFCDL--LELGYNH-DEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCI 963

Query: 285 NRITYNIL 292
           +  TY ++
Sbjct: 964 SSQTYALV 971


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 153/314 (48%), Gaps = 22/314 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  Y  LM G   EG V D + +L   R    +   P  V Y TV+  L  A     A
Sbjct: 235 PNNVTYNVLMDGMCGEGDVDDALELL---RNLPSHGCKPSTVNYNTVLKGLCSAERWGDA 291

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++ EM R   P N  T+N+++   C++  + +A +LL +M+       ++V+YN +I+
Sbjct: 292 DELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG-CTANIVTYNAIIN 350

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     +  GA+   ++M++ G  P  ++Y TL+K    ++Q   A ++ D M ++  + 
Sbjct: 351 GLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLP 410

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D V +N L+   C+ GL+ +A  + ++M + G  PN  TY ++ +G++ A K  +AL L
Sbjct: 411 -DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALEL 469

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           + E+  +      G N D           ++   LA+         +A++ V  +++ GI
Sbjct: 470 FNEMGHK------GFNPD-----------KIYQLLAECLNDDDTIEEAIQTVRKLQDSGI 512

Query: 511 PPNKTKYKKIYVEM 524
            P+   Y  I + +
Sbjct: 513 SPHTVLYNAILLGL 526



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 192/431 (44%), Gaps = 78/431 (18%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YN +++     G+ +  L + D M   G  PDV+TYN++++   +       + 
Sbjct: 164 QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 223

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------IIR 166
           +++ +   G T    T+  L+    G GD++ A   ++ +R      CK        +++
Sbjct: 224 LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDA---LELLRNLPSHGCKPSTVNYNTVLK 280

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
            L     S+E  GD D   E+  ++L  +  P+        TF  N  IY+   KG + +
Sbjct: 281 GL----CSAERWGDAD---ELVTEMLRENCPPNE------ATF--NVVIYSLCRKGLLQQ 325

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
                 +++L  M +    A   + VTY  +++ L +  ++D A  +L++M   G   + 
Sbjct: 326 A-----IQLLEKMSKHGCTA---NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDI 377

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-----LIDDSAGA 341
           +TYN LLKG C   Q   A+EL+  M  +  + PD V++N LI GF+     ++D    A
Sbjct: 378 VTYNTLLKGLCSAAQWVDAEELMDNMTQNGCL-PDNVTFNTLI-GFLCQKGLMVD----A 431

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------------------ 383
           +  F +M  +G  P  I+Y+T++   A +++   A ++F+EM                  
Sbjct: 432 IEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECL 491

Query: 384 ---------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                          L+D  +    V +N ++ G CR G  E A  I+  M  +G  P+ 
Sbjct: 492 NDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDD 551

Query: 429 ATYGSLANGIS 439
            TY  L  G++
Sbjct: 552 LTYVILIEGLA 562



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 131/346 (37%), Gaps = 68/346 (19%)

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG----AMRRQEDNASHPDHVTY 254
            ++PP  P+  +P +R      +  +   R    +   G    A+R  E +   PD    
Sbjct: 47  GAKPPPTPRLESPTTRQQQQAPRRLLGSDRRLSALVHRGDLDAALRLVESSPRPPDAALA 106

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
             +V  L + G  D A +V+      G  A  + Y  L  GYC+  ++  A+ ++  M  
Sbjct: 107 NRLVRDLCRRGRPDDAERVVGA---CGPAATVVAYGALTDGYCRAGRLGDARRVVGGM-- 161

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
              ++P+  +YN LI           AL+  ++M  RG AP                   
Sbjct: 162 --PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAP------------------- 200

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
                            D+V +N+L+E  C+     +A  +I+ M+  G  PN  TY  L
Sbjct: 201 -----------------DVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVL 243

Query: 435 ANGISLARKPGEALLLWKE----------------IKERCEVKKEGVNADSDLPPPLK-- 476
            +G+       +AL L +                 +K  C  ++ G +AD  +   L+  
Sbjct: 244 MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWG-DADELVTEMLREN 302

Query: 477 --PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             P+E   + +     R    ++A++++  M +HG   N   Y  I
Sbjct: 303 CPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAI 348



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 136/334 (40%), Gaps = 33/334 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR    P+   ++ V+  L   G         L    ++ + K S     ++       
Sbjct: 298 MLRENCPPNEATFNVVIYSLCRKG---------LLQQAIQLLEKMSKHGCTAN----IVT 344

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N           + L  +M  +G KPD++TYN ++K    A++      +++ + 
Sbjct: 345 YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMT 404

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G      TF +L+      G +  A  + + M +       I     +   +   +  
Sbjct: 405 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATK-- 462

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D   E+F ++     NP               +IY  L +   ++  + + ++    +R
Sbjct: 463 LDQALELFNEMGHKGFNPD--------------KIYQLLAECLNDDDTIEEAIQ---TVR 505

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           + +D+   P  V Y  ++  L + G  + A  ++A M   G   + +TY IL++G   + 
Sbjct: 506 KLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEG 565

Query: 301 QIDKAKELLREMAD-DAKIEPDVVSYNILIDGFI 333
            +++A+ELL ++   D  +   + S  +L+D  I
Sbjct: 566 YLNEARELLIKLCSRDVLVNSLIKSEALLLDQNI 599


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 111/462 (24%), Positives = 202/462 (43%), Gaps = 46/462 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P   +++  +  LA SG+             + R   F   + +  ++ D  +
Sbjct: 64  MVLKGHSPSSFSFNNALDLLAKSGN-------------LDRTWGFF-TEYLGRTQFDVYS 109

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +   + A    G   K  +L  QM   G  P+V  Y ++I+ C R         +  R+ 
Sbjct: 110 FGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMD 169

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSE--- 176
           ++G+      +  ++  +   G  +    + Q M        K++  L +L  Y+S    
Sbjct: 170 DLGLAANQYIYTIMINGFFKKGYKKDGFELYQKM--------KLVGVLPNLYTYNSLITE 221

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G      +VF+++    +             A N+  Y  L+ G   +G+VS    
Sbjct: 222 YCRDGKLSLAFKVFDEISKRGV-------------ACNAVTYNILIGGLCRKGQVSKAEG 268

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M+R   N   P   T+  ++  L   G +D+A   L ++  IG+    +TYNIL+ 
Sbjct: 269 LLERMKRAHIN---PTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILIS 325

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ +        EL+REM +D  I P  V+Y IL++ F+  DD   A   F+ M+  G+ 
Sbjct: 326 GFSKVGNSSVVSELVREM-EDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLV 384

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P + +Y  L+    +      A+K++  M+ +  ++ + V +N ++ GYC+     +A +
Sbjct: 385 PDQHTYGVLIHGLCIKGNMVEASKLYKSMV-EMHLQPNDVIYNTMINGYCKECNSYKALK 443

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            +E M +NG  PNVA+Y S    +    K  EA  L KE+ E
Sbjct: 444 FLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTE 485



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 147/309 (47%), Gaps = 21/309 (6%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            A N  IYT ++ G+  +G   D   +   M+        P+  TY ++++   + G + 
Sbjct: 173 LAANQYIYTIMINGFFKKGYKKDGFELYQKMKLV---GVLPNLYTYNSLITEYCRDGKLS 229

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +V  E+++ GV  N +TYNIL+ G C++ Q+ KA+ LL  M   A I P   ++N+L
Sbjct: 230 LAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM-KRAHINPTTRTFNML 288

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +DG         AL++  +++  G+ PT ++Y  L+  F+      + +++  EM  D  
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREM-EDRG 347

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +    V + +L+  + R   +E+A  +   MK  G  P+  TYG L +G+ +     EA 
Sbjct: 348 ISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEAS 407

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L+K + E                  L+P++ + + + +   +     KAL+ +  M ++
Sbjct: 408 KLYKSMVEM----------------HLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKN 451

Query: 509 GIPPNKTKY 517
           G+ PN   Y
Sbjct: 452 GVTPNVASY 460



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 132/298 (44%), Gaps = 21/298 (7%)

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +K +   G VS    +L  M   E     P+   YT ++ A  + G +D+A+ + + M  
Sbjct: 114 IKAFCENGNVSKGFELLAQM---ETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDD 170

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
           +G+ AN+  Y I++ G+ ++       EL ++M     + P++ +YN LI  +      +
Sbjct: 171 LGLAANQYIYTIMINGFFKKGYKKDGFELYQKM-KLVGVLPNLYTYNSLITEYCRDGKLS 229

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A   F+E+  RG+A   ++Y  L+       Q   A  + + M R   +      +NML
Sbjct: 230 LAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKR-AHINPTTRTFNML 288

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           ++G C  G +++A   +E++K  G  P + TY  L +G S          L +E+++R  
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDR-- 346

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                          + P +     L +  VR+    KA E+   M+  G+ P++  Y
Sbjct: 347 --------------GISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTY 390



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 125/319 (39%), Gaps = 32/319 (10%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N     G  K   +L+ +M   G  P++ TYN +I    R  +  L   V + I 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+  L+      G +  AE +++ M+  R  +    R  ++      N G 
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMK--RAHINPTTRTFNMLMDGLCNTGQ 297

Query: 181 DDDDDEVFEKL-----LPNSI-------------NPSSEPPLL----PKTFAPNSRIYTT 218
            D      EKL      P  +             N S    L+     +  +P+   YT 
Sbjct: 298 LDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTI 357

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           LM  ++    +     M   M+R       PD  TY  ++  L   G+M  A ++   M 
Sbjct: 358 LMNTFVRSDDIEKAYEMFHLMKRI---GLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMV 414

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD- 337
            + +  N + YN ++ GYC++    KA + L EM  +  + P+V SY   I   IL  D 
Sbjct: 415 EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNG-VTPNVASYISTIQ--ILCKDG 471

Query: 338 -SAGALTFFNEMRARGIAP 355
            S  A     EM   G+ P
Sbjct: 472 KSIEAKRLLKEMTEAGLKP 490


>gi|255586858|ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525946|gb|EEF28343.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 193/425 (45%), Gaps = 54/425 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD + Y+ ++    +  K  K L L+ +M     +PD+    V+ KL +    +  L+ +
Sbjct: 112 PDISLYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPDI---GVVSKLISSFPEEGKLIDI 168

Query: 116 LERILE-MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           LE  LE M I        S++++ V  G ++ A              C ++R +      
Sbjct: 169 LEETLEDMNIETQTLLCNSVLSSLVNSGLIDKA--------------CCLLRNM------ 208

Query: 175 SENEGDDDDDDEVF-----EKLLPNSINPS---------SEPPLLPKTFAPNSRI----- 215
               G+ DDDD  +     EK+ PN+ + S          +  L    F   + I     
Sbjct: 209 ---MGNGDDDDVQYKLFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRD 265

Query: 216 ---YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y  L+ G  N  R+ ++ ++L  M   E++   P   T  ++   L K   +  A  
Sbjct: 266 LLLYNNLINGLCNSDRLEESYKLLKEM---EESGFKPTQFTLNSIFGCLCKRQDVSGALD 322

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           ++ +M   G       Y +L++  C+  +  +A   L +M  +    P++++Y+ L+ G 
Sbjct: 323 LVKKMRLYGCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQEG-FPPNIIAYSALLGGL 381

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
           I + +   AL  F ++ ARG  P  I+Y  LMK    + + + A  +F+EM+    +   
Sbjct: 382 IEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIP-S 440

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +V +N+L++G+C+ G +++A   +  M      PNV TY +L +G+  A +P +A++LW 
Sbjct: 441 VVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWN 500

Query: 453 EIKER 457
           E++ R
Sbjct: 501 EMRRR 505



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 138/327 (42%), Gaps = 29/327 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+TA+++ V+N      K    + LF  M E G   D+L YN +I     + R      
Sbjct: 228 RPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYK 287

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-----EGRRDVCKIIRELD 169
           +L+ + E G      T  S+        D+  A  +V+ MR        +    ++R+L 
Sbjct: 288 LLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRKLC 347

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
               ++E          +F               ++ + F PN   Y+ L+ G +    V
Sbjct: 348 KHGKAAEAS--------IFL------------TDMVQEGFPPNIIAYSALLGGLIEVQEV 387

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
              +++   +  +      PD + Y  ++  L +A   + AR +  EM   G+  + +TY
Sbjct: 388 DQALKLFKDISAR---GRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTY 444

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N+L+ G+C+   ID A   L  M+   + EP+V +Y  LIDG         A+  +NEMR
Sbjct: 445 NLLIDGWCKNGCIDDAMNCLCSMSAKER-EPNVFTYTTLIDGLCKAGRPDDAVMLWNEMR 503

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLA 376
            RG  P ++++   +       +P+ A
Sbjct: 504 RRGCRPNRVAFMGFIHGLCKCDKPEAA 530



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 119/291 (40%), Gaps = 52/291 (17%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           ++ +++ L+  +   G+V  +   +  M  Q    +     T+  ++   VK   +D+  
Sbjct: 43  DAYVFSILVLSFSKWGQVDKSFEFIEKMEEQNFRLNEK---TFCNLIHGFVKQSRVDKGV 99

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           Q+  +M + G+  +   Y++L+ G+C   ++DKA  L  EM    KI+PD+   + LI  
Sbjct: 100 QLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMK-MLKIQPDIGVVSKLISS 158

Query: 332 F----ILID-------------------------------DSAGAL------------TF 344
           F     LID                               D A  L              
Sbjct: 159 FPEEGKLIDILEETLEDMNIETQTLLCNSVLSSLVNSGLIDKACCLLRNMMGNGDDDDVQ 218

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           +   R   I P   S++ ++     + +  LA  +F +M  +     D++ +N L+ G C
Sbjct: 219 YKLFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDM-AEIGCNRDLLLYNNLINGLC 277

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
               +EE+ ++++ M+E+GF P   T  S+   +   +    AL L K+++
Sbjct: 278 NSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMR 328



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           MR +G++ +K + T +++ +  + +   A  VF+E+       +D   +++LV  + + G
Sbjct: 1   MRDQGLSFSKYTLTPVLQVYCNAGKFDEALNVFNEI--QDHGWLDAYVFSILVLSFSKWG 58

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            V+++   IE+M+E  F  N  T+ +L +G     +  + + L+ ++      +K G   
Sbjct: 59  QVDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKM------QKYG--- 109

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                  L PD  L D L           KAL + A M+   I P+
Sbjct: 110 -------LSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPD 148



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 84/191 (43%), Gaps = 6/191 (3%)

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  ++ T   +L+ YC   + D+A  +  E+ D   +  D   ++IL+  F        
Sbjct: 5   GLSFSKYTLTPVLQVYCNAGKFDEALNVFNEIQDHGWL--DAYVFSILVLSFSKWGQVDK 62

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           +  F  +M  +     + ++  L+  F   S+     ++F +M +   +  DI  +++L+
Sbjct: 63  SFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKM-QKYGLSPDISLYDVLI 121

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            G+C    +++A  +   MK     P++     L   IS   + G+ + + +E  E   +
Sbjct: 122 GGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKL---ISSFPEEGKLIDILEETLEDMNI 178

Query: 461 KKEGVNADSDL 471
           + + +  +S L
Sbjct: 179 ETQTLLCNSVL 189


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 124/591 (20%), Positives = 246/591 (41%), Gaps = 98/591 (16%)

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
           V  F+    +++  P    +N +L++   +   K  +    QM   G +P++ T+N++I 
Sbjct: 37  VSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILIN 96

Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
             +   + +    ++ +IL++G      T  +L+                       R +
Sbjct: 97  CFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLL-----------------------RGL 133

Query: 162 C---KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP----PLLPKT-----F 209
           C   K+   L+  D+        D   +V    L N +  S E      LL K       
Sbjct: 134 CLNGKVKEALNFHDHVIRKRFHLD---QVSYGTLINGLCKSGETRAALQLLRKIEGLLLV 190

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+  +YT ++  +  +  V D   +   M  ++    +P+ VT+ +++      G +  
Sbjct: 191 RPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKK---IYPNVVTFNSLIYGFCIVGQLKE 247

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +L EM+   V  N  T+NIL+ G C++ ++ KA  +L  M     +EP+VV+Y  L+
Sbjct: 248 AVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQG-VEPNVVTYTSLM 306

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DG+ L+ +   A   FN +  RG+ P   SY+ ++     +     A K+F EM     +
Sbjct: 307 DGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEM-HLKNM 365

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             + V ++ L++G C+ G + +   +I+ +   G   N+ TY SL NG+    +  +A+ 
Sbjct: 366 TPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIA 425

Query: 450 LWKEIKERCEVKKEGVNAD----SDLPPPLKPDEELLDA--------------------- 484
           L  ++K+      EG+  D    + L   L  +  L DA                     
Sbjct: 426 LLTKMKD------EGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTV 479

Query: 485 -LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY------------VEMHSRMFTS 531
            +  +C +  FF +AL +++ ME++G  P+   Y+ +             V++   M   
Sbjct: 480 MINGLC-KEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIAR 538

Query: 532 KHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGDEYITGDY 582
           +     ++  R ++ +   ++      P S++ +E    P+    +  GD+
Sbjct: 539 ESDCSGKEQSREKKDKDTSSY------PGSFHNTEVVQSPL----HFQGDF 579



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 136/345 (39%), Gaps = 69/345 (20%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+V  ++ ++  L   G+     SV    V++K+             +P+   Y ++++ 
Sbjct: 262 PNVYTFNILIDGLCKEGEVKKATSV--LSVMIKQ-----------GVEPNVVTYTSLMDG 308

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITL 126
              + +  K   +F+ +   G  P+V +Y+VMI  LC        +    E  L+  +T 
Sbjct: 309 YFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLK-NMTP 367

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
              T+ SL+                         +CK  R  D+ D              
Sbjct: 368 NTVTYSSLIDG-----------------------LCKSGRISDVWD-------------- 390

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
                L + IN   +P         N   Y +L+ G     +V   + +L  M+   D  
Sbjct: 391 -----LIDEINNRGQP--------ANIITYNSLLNGLCKNHQVDKAIALLTKMK---DEG 434

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             PD  TYTT+V  L K G +  A+++  ++   G P N   Y +++ G C++   D+A 
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEAL 494

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
            LL +M D+  + PD V+Y  LI      + +  A+    EM AR
Sbjct: 495 SLLSQMEDNGCM-PDAVTYETLISALFKNNKNGKAVKLLREMIAR 538



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 66/273 (24%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V ++S +++ L  +         K+ D  VK  ++      + +  P+T  Y+++
Sbjct: 329 GVTPNVHSYSVMINGLCKN---------KMVDEAVKLFKEMH----LKNMTPNTVTYSSL 375

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G+      L D+++  G   +++TYN ++    +  +    + +L ++ + GI
Sbjct: 376 IDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGI 435

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              M+T+ +LV      G L+ A+ I Q                                
Sbjct: 436 QPDMSTYTTLVDGLCKNGRLKDAQRIYQ-------------------------------- 463

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              LL K +  N R+YT ++ G   EG   + + +L  M   ED
Sbjct: 464 ------------------DLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQM---ED 502

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           N   PD VTY T++SAL K     +A ++L EM
Sbjct: 503 NGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/528 (22%), Positives = 210/528 (39%), Gaps = 89/528 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G +P    + TV+  L A G  G  E+  L D +           ++     D   
Sbjct: 206 MARHGCVPDAVLYQTVIHALVAQG--GVAEAATLLDEM-----------LLMGCAADVNT 252

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N V+     LG  ++  +L D+M   G  P V+TY  +++   R  +      +L R+ 
Sbjct: 253 FNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVP 312

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E+ + +  T  +  +A                   EG     K+ R  +L +        
Sbjct: 313 EVNVVMLNTVIRGCLA-------------------EG-----KLARATELYEMMGS---- 344

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K   P+   Y  LM G    GR    VRML  M 
Sbjct: 345 --------------------------KGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEM- 377

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E+    P+ VTY+T++ +  + G  D AR +L +M+  G   N   YN ++    +  
Sbjct: 378 --EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDG 435

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+A  L++EM      +PD+ +YN +I      D    A   F  +   G+    I+Y
Sbjct: 436 KLDEAMRLVQEMKSQG-CKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITY 494

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            TL+ A   S + +   ++ +EM+      +D+V++N L++  C+ G V+ +  ++E M 
Sbjct: 495 NTLIHALLHSGRWQEGLRLANEMVLH-GCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMM 553

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  PN  +Y  L N +  A K  +AL          E+ KE +N        L PD  
Sbjct: 554 TKGIKPNNFSYNMLINELCKAGKVRDAL----------ELSKEMLNQG------LTPDIV 597

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
             + L +   +  +   AL ++  +    + P+   Y  I +  H ++
Sbjct: 598 TYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTY-NILISWHCKV 644



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 169/391 (43%), Gaps = 61/391 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN +++    LG+    +++ D+M E G  P+++TY+ ++    R         +
Sbjct: 349 PDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAM 408

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDVCKIIRELDLEDY 173
           L+++   G ++    +  ++ A    G L+ A  +VQ M+    + D+C      +   Y
Sbjct: 409 LDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTY----NTIIY 464

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              N    D+ + +F  LL   +               N   Y TL+   ++ GR  + +
Sbjct: 465 HLCNNDQMDEAEHIFGNLLEEGV-------------VANGITYNTLIHALLHSGRWQEGL 511

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R+   M          D V+Y  ++ AL K G++DR+  +L EM   G+  N  +YN+L+
Sbjct: 512 RLANEMVLH---GCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLI 568

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+  ++  A EL +EM +   + PD+V+YN LI+G   +  +  AL    ++    +
Sbjct: 569 NELCKAGKVRDALELSKEMLNQG-LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 627

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P                                    DIV +N+L+  +C++ L+++A 
Sbjct: 628 HP------------------------------------DIVTYNILISWHCKVRLLDDAS 651

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKP 444
            ++++    G  PN  T+G +    +  R+P
Sbjct: 652 MLLDKAVSGGIVPNERTWGMMVQ--NFVRQP 680



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 111/289 (38%), Gaps = 69/289 (23%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P +  +    +     GR  D + +L  M R       PD V Y TV+ ALV  G +  A
Sbjct: 178 PTTFTFGVAARALCRLGRARDALALLRGMARH---GCVPDAVLYQTVIHALVAQGGVAEA 234

Query: 271 RQVLAEMTRIGVPAN-----------------------------------RITYNILLKG 295
             +L EM  +G  A+                                    +TY  LL+G
Sbjct: 235 ATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRG 294

Query: 296 YCQQLQIDKAKEL------------------------------LREMADDAKIEPDVVSY 325
            C+  Q D+A  +                              L EM       PDV +Y
Sbjct: 295 LCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTY 354

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           NIL+ G   +     A+   +EM  +G AP  ++Y+TL+ +F  +     A  + D+M  
Sbjct: 355 NILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQM-S 413

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
                ++   +N ++    + G ++EA R+++ MK  G  P++ TY ++
Sbjct: 414 AKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTI 462



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 114/295 (38%), Gaps = 26/295 (8%)

Query: 269 RARQVLAEMTR-IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           RA  +L +M R   V  +  +YN +L    +      A  L R M  D ++ P   ++ +
Sbjct: 127 RALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRD-RVPPTTFTFGV 185

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
                  +  +  AL     M   G  P  + Y T++ A         A  + DEML   
Sbjct: 186 AARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLL-M 244

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               D+  +N +V G C +G V EA R+++RM  +G  P+V TYG L  G+   R+  EA
Sbjct: 245 GCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEA 304

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             +   + E        VN              +L+ +   C+      +A E+   M  
Sbjct: 305 YAMLGRVPE--------VNV------------VMLNTVIRGCLAEGKLARATELYEMMGS 344

Query: 508 HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSY 562
            G PP+   Y    + MH      +  S  R     E K  A     +  L +S+
Sbjct: 345 KGCPPDVHTYN---ILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSF 396


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 184/444 (41%), Gaps = 70/444 (15%)

Query: 73  KPKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT 129
            P   + LF++M   GA    PD+ TY+++I  C RA R  L    L  +++ G  +   
Sbjct: 72  SPAAAVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAI 131

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFE 189
           TF  L+                       + +C   R  D  D              V  
Sbjct: 132 TFAPLL-----------------------KGLCADKRTSDAMDI-------------VLR 155

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           ++        +E   +P  F+      T L+KG  +E R  + + +L  M       S P
Sbjct: 156 RM--------TELSCMPDVFS-----CTILLKGLCDENRSQEALELLHMMADDRGGGSPP 202

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D V+YTTV++   K G  D+A     EM    +  N +TY+ ++   C+   +DKA E+L
Sbjct: 203 DVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVL 262

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
             M  +  + PD ++Y+ ++ G+         +   N+MR+ G+ P  ++Y +LM     
Sbjct: 263 NTMVKNG-VMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCK 321

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           + +   A K+FD M +   ++ DI  +  L++GY   G + E   +++ M  NG  P+  
Sbjct: 322 NGRCTKARKIFDSMTKRG-LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHH 380

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
            +  L    +   K  +A+L++ ++++                  L P+      + D+ 
Sbjct: 381 VFNILICAYAKQEKVDQAMLVFSKMRQH----------------GLNPNVVCYGTVIDVL 424

Query: 490 VRAAFFRKALEIVACMEEHGIPPN 513
            ++     A+     M + G+ PN
Sbjct: 425 CKSGSVDDAMLYFEQMIDEGLTPN 448



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 144/345 (41%), Gaps = 58/345 (16%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V +   M R   +   PD  TY+ ++    +AG +D     L  + + G     IT+  L
Sbjct: 77  VSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAPL 136

Query: 293 LKGYCQQLQID------------------------------------KAKELLREMADD- 315
           LKG C   +                                      +A ELL  MADD 
Sbjct: 137 LKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDR 196

Query: 316 -AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
                PDVVSY  +I+GF    DS  A + ++EM  R I+P  ++Y++++ A   +    
Sbjct: 197 GGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMD 256

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A +V + M+++  V  D + ++ ++ GYC  G  +E    + +M+ +G  PNV TY SL
Sbjct: 257 KAMEVLNTMVKNG-VMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSL 315

Query: 435 ANGI------SLARKPGEALL---------LWKEIKERCEVKKEGVNADSDLP----PPL 475
            N +      + ARK  +++           ++ + +    K   V   + L       +
Sbjct: 316 MNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 375

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +PD  + + L     +     +A+ + + M +HG+ PN   Y  +
Sbjct: 376 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTV 420



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 133/328 (40%), Gaps = 31/328 (9%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE---FGAKP 91
            D+V++R+ + S         PD  +   +L    +  + ++ L+L   M +    G+ P
Sbjct: 150 MDIVLRRMTELS-------CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPP 202

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           DV++Y  +I    +             +L   I+  + T+ S++AA      ++ A  ++
Sbjct: 203 DVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVL 262

Query: 152 QAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
             M + G    C     + L  Y S   G   +D     K+  + + P            
Sbjct: 263 NTMVKNGVMPDCMTYSSI-LHGYCSS--GQPKEDIGTLNKMRSDGVEP------------ 307

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
            N   Y +LM      GR +   ++  +M ++      PD  TY T++      G++   
Sbjct: 308 -NVVTYRSLMNYLCKNGRCTKARKIFDSMTKR---GLEPDIATYRTLLQGYATKGALVEM 363

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L  M R G+  +   +NIL+  Y +Q ++D+A  +  +M     + P+VV Y  +ID
Sbjct: 364 HALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHG-LNPNVVCYGTVID 422

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKI 358
                     A+ +F +M   G+ P  I
Sbjct: 423 VLCKSGSVDDAMLYFEQMIDEGLTPNII 450


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 191/438 (43%), Gaps = 63/438 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV---------------------- 93
           PD   ++ ++N C+ +G  +K  +L+ +M   G +P+V                      
Sbjct: 358 PDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGL 417

Query: 94  ------------LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
                       +TYN+++K      + +    + E+++  GIT  + ++ +L+  +   
Sbjct: 418 FDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKK 477

Query: 142 GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
           G ++ A ++++++ E       +   L ++ +  +  GD +    VFE+++  +I P+  
Sbjct: 478 GCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKK--GDSERAFVVFEQMMAANIAPTDH 535

Query: 202 P----------------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                    + + F   S  Y +++ G+  EG V      L A 
Sbjct: 536 TFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSA---LLAY 592

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R   ++   PD +TYT+++  L K+  +  A ++ ++M   G+  + + Y+ L+ G+C+ 
Sbjct: 593 REMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKM 652

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             ++ A +   E+ D   + P+ V YN +I GFI +++   AL    EM    +      
Sbjct: 653 HDMESASKFFTELLDIG-LTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQV 711

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT+++       +  LA  ++ EML    V  DIV + +L+ G    G +E A +I++ M
Sbjct: 712 YTSIIGGLLKEGKLSLALDLYSEMLSKDIVP-DIVMYTVLINGLSNNGQLENASKILKEM 770

Query: 420 KENGFYPNVATYGSLANG 437
             N   P+V  Y  L  G
Sbjct: 771 DGNNITPSVLVYNILIAG 788



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 207/469 (44%), Gaps = 47/469 (10%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D AAY+ ++ A           +L  +M EFG  P   TY  +I  C +       + + 
Sbjct: 254 DAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLK 313

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + ++ +G+ + +   +SL+  Y   GD+ +A  +   + EG      +I  + +   S  
Sbjct: 314 DEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSK- 372

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
             GD +   E++ ++    I              PN  I  +L++G+  +  +     + 
Sbjct: 373 -VGDMEKAYELYTRMKLMGIQ-------------PNVFIVNSLLEGFHEQNLLEHAYGLF 418

Query: 237 GAMRRQEDNASH--PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                 ++   H   + VTY  ++  L + G ++ A  +  +M   G+  + ++YN L+ 
Sbjct: 419 ------DEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLIL 472

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C++  +DKA  +L+ + +   ++P+ V+Y +LIDGF    DS  A   F +M A  IA
Sbjct: 473 GHCKKGCMDKAYSMLKSILERG-LKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIA 531

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT  ++ T++     + +        +  ++   V   I  +N +++G+ + G V+ A  
Sbjct: 532 PTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSI-TYNSIIDGFFKEGAVDSALL 590

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
               M E+G  P+V TY SL +G+  + K G AL +  ++K +      G+  D      
Sbjct: 591 AYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYK------GMKLD------ 638

Query: 475 LKPDEELLDALA---DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +     L+D      D+   + FF + L+I       G+ PN   Y  +
Sbjct: 639 VVAYSALIDGFCKMHDMESASKFFTELLDI-------GLTPNTVVYNSM 680



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 184/419 (43%), Gaps = 26/419 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y AV+ AC   G   + L+L D+M   G   +V+    ++K        +L + +
Sbjct: 288 PSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQL 347

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYS 174
            + ++E G+   +  F  L+      GD+E A  +   M+  G +    I+  L LE + 
Sbjct: 348 FDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSL-LEGFH 406

Query: 175 SEN--EGDDDDDDEVFEKLLPN---------------SINPSSE--PPLLPKTFAPNSRI 215
            +N  E      DE  E  + N                +N +      ++ K   P+   
Sbjct: 407 EQNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVS 466

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+ G+  +G +     ML ++  +      P+ VTYT ++    K G  +RA  V  
Sbjct: 467 YNNLILGHCKKGCMDKAYSMLKSILER---GLKPNAVTYTLLIDGFFKKGDSERAFVVFE 523

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M    +     T+N ++ G  +  ++ + ++ L        +    ++YN +IDGF   
Sbjct: 524 QMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTS-ITYNSIIDGFFKE 582

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                AL  + EM   GI+P  I+YT+L+     S++  LA ++  +M +   +K+D+VA
Sbjct: 583 GAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDM-KYKGMKLDVVA 641

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++ L++G+C+M  +E A +    + + G  PN   Y S+ +G         AL L +E+
Sbjct: 642 YSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEM 700



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 34/261 (13%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTV-------------------RMLGAMRRQE------ 243
           F  +SR++  L+K ++   +++D V                    +L AM R+       
Sbjct: 146 FESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDAR 205

Query: 244 -------DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
                  +   + D  T   V+ A +K G  +   +   E    G+  +   Y+IL++  
Sbjct: 206 QLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAV 265

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++L ++ A ELL+EM +   + P   +Y  +I   +   +   AL   +EM + G+   
Sbjct: 266 CRRLDLNLACELLKEMREFGWV-PSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMN 324

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            I   +LMK + +     LA ++FDE++    V  D+V +++L+ G  ++G +E+A  + 
Sbjct: 325 VIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVP-DVVIFSVLINGCSKVGDMEKAYELY 383

Query: 417 ERMKENGFYPNVATYGSLANG 437
            RMK  G  PNV    SL  G
Sbjct: 384 TRMKLMGIQPNVFIVNSLLEG 404



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/341 (19%), Positives = 147/341 (43%), Gaps = 32/341 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +   P    ++TV++ L  +G     +          ++  F     VS S      
Sbjct: 525 MMAANIAPTDHTFNTVINGLGKTGRVSETQD---------KLNNFIKQGFVSTS----IT 571

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++     G     L  + +M E G  PDV+TY  +I    ++++  L + +   + 
Sbjct: 572 YNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMK 631

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+ L +  + +L+  +    D+E A      + +       ++    +  +   N   
Sbjct: 632 YKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNN-- 689

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                      +  ++N   E  ++      + ++YT+++ G + EG++S  + +   M 
Sbjct: 690 -----------MEAALNLHQE--MIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEML 736

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            ++     PD V YT +++ L   G ++ A ++L EM    +  + + YNIL+ G  ++ 
Sbjct: 737 SKD---IVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREG 793

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
            + +A  L  EM D   + PD  +Y+IL++G + +  + G 
Sbjct: 794 NLQEAFRLHDEMLDKGLV-PDDTTYDILVNGKLKVSHTLGG 833



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 21/254 (8%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R G  ++   +N LLK + +  +I  A E  R M +   + P V   N L+   +  +  
Sbjct: 143 RYGFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLV-PWVPIMNNLLTAMVRRNMV 201

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A   ++EM  RGI     +   +M+A     + +   K F E  +   ++VD  A+++
Sbjct: 202 CDARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEA-KGRGLEVDAAAYSI 260

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE----- 453
           LV+  CR   +  A  +++ M+E G+ P+  TY ++           EAL L  E     
Sbjct: 261 LVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVG 320

Query: 454 -----IKERCEVKKEGVNADSDLPPPL---------KPDEELLDALADICVRAAFFRKAL 499
                I  R  +K   V  D +L   L          PD  +   L + C +     KA 
Sbjct: 321 LPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAY 380

Query: 500 EIVACMEEHGIPPN 513
           E+   M+  GI PN
Sbjct: 381 ELYTRMKLMGIQPN 394


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 175/393 (44%), Gaps = 21/393 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +Y  V++      +  K   LF +M + G  PDV+T N +I    +         V
Sbjct: 119 PNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEV 178

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++ +  I    TT+ SLV  Y+  G L+ A  I++ M    +    +   + ++    
Sbjct: 179 LRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLC- 237

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   +  E+   ++ +  N             PN   Y  L+ GY  +G   D V M
Sbjct: 238 -KFGGHTEAREILNSMIQSRGN-------------PNVATYGGLLHGYATKG---DLVEM 280

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              +     N   PDH  +   + A VK G +D A     +M + G+  + I+Y  ++ G
Sbjct: 281 NNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDG 340

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  ++D A     +M DD  + PD+V +  LI GF +      A   F EM  RGI P
Sbjct: 341 LCKIGRLDAAMSQFCQMIDDG-LSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRP 399

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T + +TT++       +   A  +FD ++    VK ++V++N ++ GY   G ++E  ++
Sbjct: 400 TVVVFTTMIDKLFKEGKVTEAKTLFD-LMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKL 458

Query: 416 IERMKENGFYPNVATYGSLANG-ISLARKPGEA 447
           ++ M   G  PN  T+ +L +  +S+  KP  A
Sbjct: 459 LDDMLSVGLKPNAVTFNTLLDDMLSMGLKPDVA 491



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 109/500 (21%), Positives = 201/500 (40%), Gaps = 76/500 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P T  Y  +++ C  +G          Q+ + G + + +++  +++ LCA       +  
Sbjct: 11  PTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTSDAMNI 70

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V+    ++G T  + ++  L+         E A  ++  M E   D C      ++  Y+
Sbjct: 71  VIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAE-DGDHCPP----NVVSYT 125

Query: 175 SENEGDDDDDD-----EVFEKLLPNSINPSSEP----------------------PLLPK 207
           +   G   +D+      +F ++L   I P                           +  K
Sbjct: 126 TVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDK 185

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              P+   Y +L+ GY++ G++ + VR+L  M R       P+ VTY+ ++  L K G  
Sbjct: 186 HIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRH---GQPPNGVTYSMLIDCLCKFGGH 242

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA----------- 316
             AR++L  M +     N  TY  LL GY  +  + +   L+  M  +            
Sbjct: 243 TEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQ 302

Query: 317 -----------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
                                   + PD++SY  +IDG   I     A++ F +M   G+
Sbjct: 303 IYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGL 362

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           +P  + +T L+  F++  + + A ++F EM+ D  ++  +V +  +++   + G V EAK
Sbjct: 363 SPDIVVFTNLIHGFSMYGKWEKAEELFYEMM-DRGIRPTVVVFTTMIDKLFKEGKVTEAK 421

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN----ADS 469
            + + M      PNV +Y ++ +G  LA K  E L L  ++     +K   V      D 
Sbjct: 422 TLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSV-GLKPNAVTFNTLLDD 480

Query: 470 DLPPPLKPDEELLDALADIC 489
            L   LKPD    + L D C
Sbjct: 481 MLSMGLKPDVATCNTLIDSC 500



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 157/363 (43%), Gaps = 56/363 (15%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   YT L+KG  +E +  + V ++  M    D+   P+ V+YTTV+    K   + +
Sbjct: 81  TPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCP-PNVVSYTTVIHGFFKEDEVGK 139

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +  EM   G+P + +T N ++ G C+   +DKA+E+LR+M  D  I PD  +YN L+
Sbjct: 140 AYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMF-DKHIMPDCTTYNSLV 198

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---D 386
            G++       A+    +M   G  P  ++Y+ L+           A ++ + M++   +
Sbjct: 199 HGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGN 258

Query: 387 PRV------------KVDIVAWNMLVE-------------------GYCRMGLVEEAKRI 415
           P V            K D+V  N L++                    Y + G ++EA   
Sbjct: 259 PNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLT 318

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
             +M++ G  P++ +YG++ +G+    K G    L   + + C++  +G          L
Sbjct: 319 FNKMRQQGLMPDIISYGTMIDGLC---KIGR---LDAAMSQFCQMIDDG----------L 362

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
            PD  +   L         + KA E+   M + GI P       ++  M  ++F     +
Sbjct: 363 SPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVV----VFTTMIDKLFKEGKVT 418

Query: 536 QAR 538
           +A+
Sbjct: 419 EAK 421



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 3/221 (1%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R       P  VTYT ++S     G ++ A   L ++ + G+ AN I++  +L+  C 
Sbjct: 1   MARAGSKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCA 60

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAPT 356
           + +   A  ++          PDV SY +L+ G         A+   + M   G    P 
Sbjct: 61  EKRTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPN 120

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +SYTT++  F    +   A  +F EML D  +  D+V  N +++G C++  +++A+ ++
Sbjct: 121 VVSYTTVIHGFFKEDEVGKAYTLFCEML-DRGIPPDVVTCNSIIDGLCKVQAMDKAEEVL 179

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +M +    P+  TY SL +G   + +  EA+ + K++   
Sbjct: 180 RQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRH 220



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/352 (20%), Positives = 144/352 (40%), Gaps = 50/352 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P+   +S ++  L   G  G  E+ ++ + +++           S   P+ A 
Sbjct: 217 MSRHGQPPNGVTYSMLIDCLCKFG--GHTEAREILNSMIQ-----------SRGNPNVAT 263

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+  A  G   +   L D M + G +PD   +N+ I    +  R    +    ++ 
Sbjct: 264 YGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMR 323

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAET-IVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           + G+   + ++ +++      G L+ A +   Q + +G      +   L +  +S    G
Sbjct: 324 QQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNL-IHGFSM--YG 380

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +  +E+F +++   I P+               ++TT++     EG+V++   +   M
Sbjct: 381 KWEKAEELFYEMMDRGIRPT-------------VVVFTTMIDKLFKEGKVTEAKTLFDLM 427

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                 +  P+ V+Y  ++     AG +D   ++L +M  +G+  N +T+N LL      
Sbjct: 428 PIA---SVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLL------ 478

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
                  ++L        ++PDV + N LID           LT F EM ++
Sbjct: 479 ------DDML-----SMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSK 519


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 127/537 (23%), Positives = 218/537 (40%), Gaps = 51/537 (9%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P  ++++ V+S LA +  D   +++ L+    +R+ +   P       P T  +     A
Sbjct: 140 PSFRSYNVVLSTLARA--DCHADALLLY----RRMLRDRVP-------PTTFTFGVAARA 186

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
              LG+    L L   M   G  PD + Y  +I              +L+ +L MG    
Sbjct: 187 LCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAAD 246

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD--- 184
           + TF  LV    G G +  A  +V  M         +     L+      + D+      
Sbjct: 247 VNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLG 306

Query: 185 --DEVFEKLLPNSINPS-SEPPLL----------PKTFAPNSRIYTTLMKGYMNEGRVSD 231
              EV   +L   I    +E  L            K   P+   Y+ LM G    GR   
Sbjct: 307 RLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGS 366

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            VRML  M   E+    P+ VTY+T++ +  + G  D AR +L +M   G   N   YN 
Sbjct: 367 AVRMLDEM---EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNG 423

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++   C+  ++D+A  L++EM      +PD+ +YN +I      D    A   F  +   
Sbjct: 424 IIYALCKDGKLDQATRLVQEMKSQG-CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEE 482

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+    I+Y TL+ A   + + +   ++  EML     ++D++++N L++  C+ G V+ 
Sbjct: 483 GVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHG-CQLDVISYNGLIKALCKEGNVDR 541

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           +  ++E M   G  PN  +Y  L N +  A K  +AL          E+ KE +N     
Sbjct: 542 SMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDAL----------ELSKEMLNQG--- 588

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
              L PD    + L +   +  +   AL ++  +    + P+   Y  I +  H ++
Sbjct: 589 ---LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTY-NILISWHCKV 641



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 165/384 (42%), Gaps = 65/384 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+ +++    LG+    +++ D+M E G  P+++TY+ ++    R         +
Sbjct: 346 PDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAM 405

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDVCK---IIRELDL 170
           L+++L  G ++    +  ++ A    G L+ A  +VQ M+    + D+C    +I  L  
Sbjct: 406 LDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCN 465

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            D   E E        +F  L+   +               N   Y TL+   +  GR  
Sbjct: 466 NDLMEEAE-------HIFRNLIEEGV-------------VANGITYNTLIHALLRNGRWQ 505

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +R+   M          D ++Y  ++ AL K G++DR+  +L EM   G+  N  +YN
Sbjct: 506 EGLRLASEMLLH---GCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYN 562

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           +L+   C+  ++  A EL +EM +   + PD+V+YN LI+G   +  +  AL    ++  
Sbjct: 563 MLINELCKAGKVRDALELSKEMLNQG-LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPN 621

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             + P                                    DIV +N+L+  +C++ L++
Sbjct: 622 ENVHP------------------------------------DIVTYNILISWHCKVRLLD 645

Query: 411 EAKRIIERMKENGFYPNVATYGSL 434
           +A  ++++    G  PN  T+G +
Sbjct: 646 DAAMLLDKAISGGIVPNERTWGMM 669



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 190/467 (40%), Gaps = 68/467 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G +P    + TV+  L A G  G  E+  L D +           ++     D   
Sbjct: 203 MARHGCVPDAVLYQTVIHALVAQG--GVAEAAMLLDEM-----------LLMGCAADVNT 249

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++     LG+ ++  +L D+M   G  P V+TY  +++   R  +      +L R+ 
Sbjct: 250 FNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLP 309

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG------------RRDVCKI---- 164
           E+ + +  T  +  +      G L  A  + + M                  +CK+    
Sbjct: 310 EVNVVMLNTVIRGCLTE----GKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFG 365

Query: 165 --IRELD-LED--------------YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK 207
             +R LD +E+              +S    G  DD   + +++L              K
Sbjct: 366 SAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLA-------------K 412

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
            F+ NS+ Y  ++     +G++    R++  M+ Q      PD  TY T++  L     M
Sbjct: 413 GFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQ---GCKPDICTYNTMIYHLCNNDLM 469

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           + A  +   +   GV AN ITYN L+    +  +  +   L  EM      + DV+SYN 
Sbjct: 470 EEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHG-CQLDVISYNG 528

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI       +   ++    EM  +GI P   SY  L+     + + + A ++  EML + 
Sbjct: 529 LIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEML-NQ 587

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            +  DIV +N L+ G C++G    A  ++E++     +P++ TY  L
Sbjct: 588 GLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNIL 634



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 137/339 (40%), Gaps = 52/339 (15%)

Query: 5   GYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           G  P++  +ST++     +G  DD                R   D  +      ++  YN
Sbjct: 378 GCAPNIVTYSTLLHSFCRNGMWDDA---------------RAMLDQMLAKGFSMNSQGYN 422

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            ++ A    GK  +  +L  +M   G KPD+ TYN MI              +   ++E 
Sbjct: 423 GIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEE 482

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR---ELDLEDYSSE--- 176
           G+     T+ +L+ A +  G  +          EG R   +++    +LD+  Y+     
Sbjct: 483 GVVANGITYNTLIHALLRNGRWQ----------EGLRLASEMLLHGCQLDVISYNGLIKA 532

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG+ D    + E+++   I              PN+  Y  L+      G+V D + 
Sbjct: 533 LCKEGNVDRSMALLEEMVTKGIK-------------PNNFSYNMLINELCKAGKVRDALE 579

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  Q      PD VTY T+++ L K G    A  +L ++    V  + +TYNIL+ 
Sbjct: 580 LSKEMLNQ---GLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILIS 636

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            +C+   +D A  LL + A    I P+  ++ +++  F+
Sbjct: 637 WHCKVRLLDDAAMLL-DKAISGGIVPNERTWGMMVQNFV 674



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 114/295 (38%), Gaps = 26/295 (8%)

Query: 269 RARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           RA  +L +M  R  V  +  +YN++L    +      A  L R M  D ++ P   ++ +
Sbjct: 124 RALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRD-RVPPTTFTFGV 182

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
                  +  +  AL     M   G  P  + Y T++ A         A  + DEML   
Sbjct: 183 AARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLL-M 241

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               D+  +N LV G C +G V EA R+++RM   G  P+V TYG L  G+   R+  EA
Sbjct: 242 GCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEA 301

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             +   + E        VN              +L+ +   C+      +A E+   M  
Sbjct: 302 CAMLGRLPE--------VNV------------VMLNTVIRGCLTEGKLARATELYEMMGS 341

Query: 508 HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSY 562
            G PP+   Y    + MH      +  S  R     E K  A     +  L +S+
Sbjct: 342 KGCPPDVHTYS---ILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSF 393


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 126/545 (23%), Positives = 217/545 (39%), Gaps = 85/545 (15%)

Query: 10  VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIV------SDSKPDTAAYNA 63
           V A S++++ L   G D  V +            ++ D  +V         KP    YN 
Sbjct: 198 VSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNV 257

Query: 64  VLNACANLGKP-KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           +LN    +G P  K   L   M   G  PD  TYN +I  C R S       V E +   
Sbjct: 258 ILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLS 317

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSENEGD 180
           G +    TF +L+  Y                 + RR  +  ++++E++           
Sbjct: 318 GFSPDKVTFNTLLDVY----------------GKSRRPKEAMEVLKEMEFSG-------- 353

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                       F+P+   Y +L+  Y  +G + + + +   M 
Sbjct: 354 ----------------------------FSPSIVTYNSLISAYARDGLLREAMELKDQMV 385

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    PD  TYTT++S   KAG  + A ++  EM   G   N  T+N L+K +  + 
Sbjct: 386 ---EKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRG 442

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +  +  ++  E+ +     PD+V++N L+  F      +     F EM+  G  P + ++
Sbjct: 443 RFAEMMKVFEEI-EICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTF 501

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            TL+ A++     + A  V+  ML +  V  D+ ++N ++    R GL E+++++   MK
Sbjct: 502 NTLISAYSRCGSFQQAMAVYKRML-EAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMK 560

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI------------------KERCEVKK 462
           +    PN  TY SL +  + +++      L +EI                    +C++  
Sbjct: 561 DGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLM 620

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
           E  +A  +L     PD   L+A+  I  R     KA EI+  M E G  P+   Y  + +
Sbjct: 621 ETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSL-M 679

Query: 523 EMHSR 527
            MHSR
Sbjct: 680 YMHSR 684



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 180/441 (40%), Gaps = 65/441 (14%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           +S   PD   +N +L+      +PK+ +++  +M   G  P ++TYN +I   AR     
Sbjct: 316 LSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLR 375

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIREL 168
             + + ++++E GI   + T+ +L++ +   G  E A  I   MR    + ++C     +
Sbjct: 376 EAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALI 435

Query: 169 DLEDYSSENEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT--------------- 208
            +      N G   +  +VFE++      P+ +  ++   +  +                
Sbjct: 436 KMHG----NRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 491

Query: 209 --FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
             F P    + TL+  Y    R     + +   +R  +    PD  +Y  V++AL + G 
Sbjct: 492 AGFVPERDTFNTLISAY---SRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGL 548

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD------------ 314
            +++ +V AEM       N +TY  LL  Y    +I++   L  E+              
Sbjct: 549 WEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKT 608

Query: 315 ---------------------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
                                  K  PD+ + N +I  +      A A    N M   G 
Sbjct: 609 LVLVNSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGF 668

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           +P+  +Y +LM   + S   + + +V  E+L    +K D++++N ++  YCR G +++A 
Sbjct: 669 SPSLATYNSLMYMHSRSENFERSEEVLKEILAKG-LKPDLISYNTVIFAYCRNGRMKDAS 727

Query: 414 RIIERMKENGFYPNVATYGSL 434
           RI   MK  G  P+V TY + 
Sbjct: 728 RIFSYMKTYGLVPDVITYNTF 748



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 188/431 (43%), Gaps = 51/431 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-------------ESVKLFDVVVKR------ 41
           M+  G  P V  ++T++S    +G D P               ++  F+ ++K       
Sbjct: 384 MVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGR 443

Query: 42  ----VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
               ++ F + +I  +  PD   +N +L      G   +   +F +M   G  P+  T+N
Sbjct: 444 FAEMMKVFEEIEIC-NCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 502

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I   +R       + V +R+LE G+T  ++++ +++AA    G  E +E +   M++G
Sbjct: 503 TLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDG 562

Query: 158 RRDVCKIIRELDLEDY--SSENEGDDDDDDEVFEKLLPNSINPSSEP-PLLPKTFAPNSR 214
           R    ++     L  Y  S E E      +E++  L        +EP P+L KT    + 
Sbjct: 563 RCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGL--------TEPVPVLLKTLVLVNS 614

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
               LM          +T      ++++      PD  T   +++   +   + +A ++L
Sbjct: 615 KCDLLM----------ETEHAFEELKKK----GSPDLSTLNAMIAIYGRRQMVAKANEIL 660

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M   G   +  TYN L+  + +    ++++E+L+E+     ++PD++SYN +I  +  
Sbjct: 661 NFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKG-LKPDLISYNTVIFAYCR 719

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 A   F+ M+  G+ P  I+Y T + ++A  S  + A  V   M++    K +  
Sbjct: 720 NGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHG-CKRNQN 778

Query: 395 AWNMLVEGYCR 405
            +N +V+GYC+
Sbjct: 779 TYNSIVDGYCK 789



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 78/201 (38%), Gaps = 29/201 (14%)

Query: 328 LIDGFILIDDSAGALTFFNEMRAR-------GIAPTKISYTTLMKAFALSSQPKLANKVF 380
           +I G         A++ F+ +R R         +   +  T L K   +S+   + N   
Sbjct: 150 IIKGLGFYKKCDMAMSVFSWVREREDFESVLNCSVVAVIITMLGKEGKVSAASSILNN-- 207

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
              LR     +D+ A+  L+  Y   G   +A  + ++M+E G  P + TY  + N    
Sbjct: 208 ---LRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVY-- 262

Query: 441 ARKPGEALLLWKEIKERCE-VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
               G+  + W +I      +K  GV           PD+   + L   C R + + +A 
Sbjct: 263 ----GKMGMPWSKISGLVHGMKSSGV----------APDDYTYNTLISCCRRGSLYEEAA 308

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
           ++   M+  G  P+K  +  +
Sbjct: 309 QVFEEMKLSGFSPDKVTFNTL 329


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 195/441 (44%), Gaps = 41/441 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +LR+G  P   A+++ V     +G      + +LF ++ +R              P T  
Sbjct: 100 LLRAGLAPDSHAYTSFVLGYCRTGLFA--HACRLFLLMPQRG---------CARTPFT-- 146

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+L      G  ++ + +F  M   G  PD   Y++M+     A R    V +L   +
Sbjct: 147 YAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAM 206

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    +  + +L+  Y   GDLE+A  I + M+   +     +R            G 
Sbjct: 207 GKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQS--KGCLPNVRTYTQLICGFCKSGK 264

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +    ++ +++   +             APN   YTTL++G  +EG +    R+L +M 
Sbjct: 265 VERAMVLYSRMIEAGL-------------APNVVTYTTLIQGQCSEGHLEHAFRLLHSM- 310

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E     P+  T   ++ AL K G ++ A+Q L  + + G+  N++ Y  ++   C+  
Sbjct: 311 --EACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSG 368

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           + D A  L++++  +  + PD   Y+ LIDG    +    A++  N+M   G+    + +
Sbjct: 369 KFDGAHNLMQKIITEGFV-PDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPF 427

Query: 361 TTL----MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           T L    ++ F  S  PK+      + +    VK D+V + + +  YC+ G +E+A+ ++
Sbjct: 428 TILIDKHLREFR-SDSPKM----ISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMM 482

Query: 417 ERMKENGFYPNVATYGSLANG 437
            +M ++G  PN+ TY +L  G
Sbjct: 483 IQMIDHGVRPNLTTYNTLIKG 503



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 158/387 (40%), Gaps = 41/387 (10%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG-AMRRQEDNASHPDHVTYTTVVSALVKA 264
           P   AP+S +Y+ ++ G    GR  + V +L  AM +       P+   Y  ++      
Sbjct: 172 PDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGK----GFVPNVAVYNALIDGYCST 227

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G ++ A  +   M   G   N  TY  L+ G+C+  ++++A  L   M + A + P+VV+
Sbjct: 228 GDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIE-AGLAPNVVT 286

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y  LI G         A    + M A G+AP + +   L+ A     + + A +    ++
Sbjct: 287 YTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLV 346

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           +   +KV+ V +  +++  C+ G  + A  +++++   GF P+   Y SL +G+    K 
Sbjct: 347 QKG-IKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKL 405

Query: 445 GEALLLWKEIKERCEVKKEGVNAD----------------SDLPPPLKPDEELLDALADI 488
            EA+ L  ++ E       GV A+                SD P  +           D+
Sbjct: 406 LEAISLLNDMIE------SGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDV 459

Query: 489 CVRAAFFRK---------ALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
                F R          A  ++  M +HG+ PN T Y  +     +    S+  S  + 
Sbjct: 460 VTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKN 519

Query: 540 DRRRERKRAAEAFKFWLGL---PNSYY 563
                 K   E++   LGL    NSY+
Sbjct: 520 MIDNGCKPNDESYTVLLGLLLKKNSYH 546



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 119/309 (38%), Gaps = 21/309 (6%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N   YTTL+  Y + G +    R L ++ R       PD   YT+ V    + G    A 
Sbjct: 73  NLHTYTTLINAYCHAGDLPAAKRHLSSLLRA---GLAPDSHAYTSFVLGYCRTGLFAHAC 129

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++   M + G      TY  LL+G C    + +A  +   M  D    PD   Y+I++ G
Sbjct: 130 RLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDG-CAPDSHVYSIMVHG 188

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                 +  A+    +   +G  P    Y  L+  +  +   +LA  +F  M +      
Sbjct: 189 LCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGM-QSKGCLP 247

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           ++  +  L+ G+C+ G VE A  +  RM E G  PNV TY +L  G         A  L 
Sbjct: 248 NVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLL 307

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
             + E C                L P+E     L D   +     +A + +  + + GI 
Sbjct: 308 HSM-EACG---------------LAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIK 351

Query: 512 PNKTKYKKI 520
            N+  Y  +
Sbjct: 352 VNQVIYTSM 360



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/502 (20%), Positives = 199/502 (39%), Gaps = 97/502 (19%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P    +S +V  L  +G  G  E+V L    + +              P+ A YNA+
Sbjct: 174 GCAPDSHVYSIMVHGLCGAGRAG--EAVALLTDAMGK-----------GFVPNVAVYNAL 220

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++   + G  +  + +F  M   G  P+V TY  +I    ++ +    + +  R++E G+
Sbjct: 221 IDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGL 280

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIRELDLED 172
              + T+ +L+      G LE A  ++ +M                  +CK  R  + + 
Sbjct: 281 APNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQ 340

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLMKGYM 224
           +           ++V    + +++  S +          ++ + F P++ +Y++L+ G  
Sbjct: 341 FLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLC 400

Query: 225 NEGRVSDTVRMLGAM--------------------------------RRQEDNASHPDHV 252
            E ++ + + +L  M                                 R       PD V
Sbjct: 401 RENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVV 460

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TYT  + +  + G M+ A  ++ +M   GV  N  TYN L+KGY     + +A   L+ M
Sbjct: 461 TYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNM 520

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF---AL 369
            D+   +P+  SY +L+ G +L  +S      ++++ A  I+  KI    +++      +
Sbjct: 521 IDNG-CKPNDESYTVLL-GLLLKKNS------YHDLVADSISLWKIVDMKVLEELLEEVI 572

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIV--------------------AWNMLVEGYCRMGLV 409
             Q   A+ V+D  +R    KVD +                     +  ++E   RM L+
Sbjct: 573 KLQCSSASYVYDCFIR-CLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLL 631

Query: 410 EEAKRIIERMKENGFYPNVATY 431
           +EA R ++ M +  + P + +Y
Sbjct: 632 KEALRFLDSMVKRNYLPRLESY 653



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 100/497 (20%), Positives = 189/497 (38%), Gaps = 84/497 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD---------------GPVE--SVKLFDVVVKRVR 43
           M+ +G  P+V  ++T++    + G                  P E   + L D + K  R
Sbjct: 275 MIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGR 334

Query: 44  -----KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
                +F    +    K +   Y ++++A    GK      L  ++   G  PD   Y+ 
Sbjct: 335 IEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSS 394

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I    R ++    + +L  ++E G+      F  L+  +               +RE R
Sbjct: 395 LIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKH---------------LREFR 439

Query: 159 RDVCKIIREL--------DLEDY-----SSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            D  K+I +         D+  Y     S   +G  +D + +  +++ + + P       
Sbjct: 440 SDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRP------- 492

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                 N   Y TL+KGY N G VS       +++   DN   P+  +YT ++  L+K  
Sbjct: 493 ------NLTTYNTLIKGYANLGLVSQA---FSSLKNMIDNGCKPNDESYTVLLGLLLKKN 543

Query: 266 S----------------MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           S                M    ++L E+ ++   +    Y+  ++   +  ++++AK  L
Sbjct: 544 SYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFL 603

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
             M   A + P    Y  +I+    +     AL F + M  R   P   SY  ++ A   
Sbjct: 604 VGM-QSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCE 662

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                 A  +F ++L     + D +AW +L++G  + G   +  R++  M+E    P  A
Sbjct: 663 EGSFHTAKSIFGDILSKEYNR-DEIAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGSA 721

Query: 430 TYGSLANGISLARKPGE 446
            Y  L   I++  +  E
Sbjct: 722 IYSRLTGEITVTSEAQE 738



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 116/309 (37%), Gaps = 25/309 (8%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P    P  R   TL+      G +SD   +   M  +  +       TYTT+++A   AG
Sbjct: 36  PSAPVPPIRCLNTLLMALARHGMLSDMESLAARMPVRNLH-------TYTTLINAYCHAG 88

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +  A++ L+ + R G+  +   Y   + GYC+      A  L   M           +Y
Sbjct: 89  DLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPF-TY 147

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             L+ G         A+  F  M   G AP    Y+ ++     + +   A  +  + + 
Sbjct: 148 AALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMG 207

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              V  ++  +N L++GYC  G +E A  I + M+  G  PNV TY  L  G   + K  
Sbjct: 208 KGFVP-NVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVE 266

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
            A++L+  + E                  L P+      L            A  ++  M
Sbjct: 267 RAMVLYSRMIE----------------AGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSM 310

Query: 506 EEHGIPPNK 514
           E  G+ PN+
Sbjct: 311 EACGLAPNE 319


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 21/394 (5%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           +K  R   D  ++   KPD  +Y A+L+  A  G       LF+ M   G  PD   +N 
Sbjct: 345 IKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNT 404

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREG 157
           +I   AR       + + E + + G+   + TF ++++A+   G L+ A E     +  G
Sbjct: 405 LINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTG 464

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                      D   YS   +G  +  D V  K L + +     PP       P  + +T
Sbjct: 465 VPP--------DTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP-------PCIKFFT 509

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           +++     EGRV++   ++  +         P+ +T+ ++V      G+M  A  +L  M
Sbjct: 510 SIINNLCKEGRVAEGKDVVDLIIH---TGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSM 566

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
             +GV  +  TYN L+ GYC+  +ID A  L R+M    ++    VSYNI++ G      
Sbjct: 567 ESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHK-RVTLTSVSYNIILHGLFQARR 625

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
           +  A   F+EM   G+A +  +Y T++     ++    AN + +++     VK DI+ +N
Sbjct: 626 TIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLF-SMNVKFDILTFN 684

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +++    ++G  +EAK +   +   G  P + TY
Sbjct: 685 IVIRAMFKVGRRQEAKELFAAISTYGLVPTILTY 718



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 120/588 (20%), Positives = 239/588 (40%), Gaps = 100/588 (17%)

Query: 31  SVKLFDVVVKRVRKFSDPDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQLF 81
           ++  +++++   R+   PD+          +   PD  +YNA+++  +  G+  K   LF
Sbjct: 188 TIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLF 247

Query: 82  DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141
            +M E G  P+V+TY+ +I    +         VL +++  G+     T+  L+  Y   
Sbjct: 248 YKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTS 307

Query: 142 GDLEIAETIVQAMREGRR--DVCKIIRELD-LEDYSSENEGDDDDDDEVFEKLLPNSINP 198
           G  + +  + + M       DV      +  L  +    E  D  D  V +   P+ I+ 
Sbjct: 308 GMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISY 367

Query: 199 SSE-----------------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
            +                    ++ +   P+  ++ TL+  Y   G +  ++ M   M +
Sbjct: 368 GALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTK 427

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q  N   PD +T++TV+SA  + G +D A +    M   GVP +   Y+ L++G C +  
Sbjct: 428 QGVN---PDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRD 484

Query: 302 IDKAKELLREM--------------------ADDAKI---------------EPDVVSYN 326
           + KAKEL+ +M                      + ++                P+++++N
Sbjct: 485 LVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFN 544

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            L+DG+ L+ +   A+   + M + G+ P   +Y TL+  +    +   A  +F +ML  
Sbjct: 545 SLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHK 604

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
            RV +  V++N+++ G  +      AK +   M E+G   ++ TY ++  G+       E
Sbjct: 605 -RVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDE 663

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF----FRKALEIV 502
           A +L +++          +N   D+               +I +RA F     ++A E+ 
Sbjct: 664 ANMLLEKLFS--------MNVKFDI------------LTFNIVIRAMFKVGRRQEAKELF 703

Query: 503 ACMEEHGIPPNKTKYKKIYVEM--------HSRMFTSKHASQARQDRR 542
           A +  +G+ P    Y+ +   +           +F+S   S    D R
Sbjct: 704 AAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSR 751



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 18/288 (6%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V +   M R     + P   TY  +++   +A   D    V   + R G+  +  +YN L
Sbjct: 171 VELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNAL 230

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+ ++ ++DKA +L  +M ++  I P+VV+Y+ LI+G     +   A     +M   G
Sbjct: 231 IDGFSKEGEVDKAHDLFYKM-EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 289

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++Y  L+  ++ S   K + +VF EM     V  D+   N  +   C+ G ++EA
Sbjct: 290 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVP-DVGNCNSFMTALCKHGRIKEA 348

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           + I + M   G  P+V +YG+L +G + A        L+  +   C    EGV       
Sbjct: 349 RDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMV--C----EGV------- 395

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               PD  + + L +   R     K+L +   M + G+ P+   +  +
Sbjct: 396 ---VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 440


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 208/480 (43%), Gaps = 51/480 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R GY P V   + ++           + ++     V++ + KF  PD+         A
Sbjct: 115 MVRKGYNPDVILCTKLIKGFFT------LRNIPKAVRVMEILEKFGQPDVF--------A 160

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YNA++N    + +     ++ D+M      PD +TYN+MI  LC+R  +  L + VL ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG-KLDLALKVLNQL 219

Query: 120 LEMGITLCMTTFQSLVAAYVGFG-------------------DLEIAETIVQAM-REGRR 159
           L       + T+  L+ A +  G                   D+    TI++ M +EG  
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 160 D-VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA----PNSR 214
           D   +++R L+L+         D     +  + L N         L+ K F+    PN  
Sbjct: 280 DRAFEMVRNLELKGCEP-----DVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y+ L+     +G++ + + +L  M+ +      PD  +Y  +++A  + G +D A + L
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEK---GLTPDAYSYDPLIAAFCREGRLDVAIEFL 391

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M   G   + + YN +L   C+  + D+A E+  ++  +    P+  SYN +      
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG-EVGCSPNSSSYNTMFSALWS 450

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
             D   AL    EM + GI P +I+Y +++           A ++  +M R       +V
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDM-RSCEFHPSVV 509

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +N+++ G+C+   +E+A  ++E M  NG  PN  TY  L  GI  A    EA+ L  ++
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 174/385 (45%), Gaps = 43/385 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P +  ++T++  +   G         + D   + VR       +   +PD  +
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEG---------MVDRAFEMVRNLE----LKGCEPDVIS 300

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L A  N GK ++  +L  +M      P+V+TY+++I    R  +    + +L+ + 
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 360

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
           E G+T    ++  L+AA+   G L++A   ++ M     D C      D+ +Y++     
Sbjct: 361 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS---DGCLP----DIVNYNTVLATL 413

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D   E+F KL    +  S           PNS  Y T+     + G   D +R 
Sbjct: 414 CKNGKADQALEIFGKL--GEVGCS-----------PNSSSYNTMFSALWSSG---DKIRA 457

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +     N   PD +TY +++S L + G +D A ++L +M       + +TYNI+L G
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLG 517

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  +I+ A  +L  M  +    P+  +Y +LI+G       A A+   N++  R  A 
Sbjct: 518 FCKAHRIEDAINVLESMVGNG-CRPNETTYTVLIEGIGFAGYRAEAMELANDL-VRIDAI 575

Query: 356 TKISYTTLMKAFALSSQPKLANKVF 380
           ++ S+  L + F L +  + +++ F
Sbjct: 576 SEYSFKRLHRTFPLLNVLQRSSQTF 600



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 145/320 (45%), Gaps = 28/320 (8%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K + P+  + T L+KG+     +   VR++  + +       PD   Y  +++   K
Sbjct: 115 MVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEK----FGQPDVFAYNALINGFCK 170

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +D A +VL  M       + +TYNI++   C + ++D A ++L ++  D   +P V+
Sbjct: 171 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSD-NCQPTVI 229

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y ILI+  +L      AL   +EM +RG+ P   +Y T+++      +  + ++ F EM
Sbjct: 230 TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC---KEGMVDRAF-EM 285

Query: 384 LRDPRVKV---DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +R+  +K    D++++N+L+      G  EE ++++ +M      PNV TY  L   +  
Sbjct: 286 VRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 345

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
             K  EA+ L K +KE+                 L PD    D L     R      A+E
Sbjct: 346 DGKIEEAMNLLKLMKEK----------------GLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 501 IVACMEEHGIPPNKTKYKKI 520
            +  M   G  P+   Y  +
Sbjct: 390 FLETMISDGCLPDIVNYNTV 409



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 151/351 (43%), Gaps = 56/351 (15%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K F+P++  Y  ++    + G++   +++L  +    DN   P  +TYT ++ A +  G 
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL--LSDNC-QPTVITYTILIEATMLEGG 243

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A +++ EM   G+  +  TYN +++G C++  +D+A E++R + +    EPDV+SYN
Sbjct: 244 VDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNL-ELKGCEPDVISYN 302

Query: 327 ILIDGF-----------------------------ILIDDSA------GALTFFNEMRAR 351
           IL+                                ILI           A+     M+ +
Sbjct: 303 ILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P   SY  L+ AF    +  +A +  + M+ D  +  DIV +N ++   C+ G  ++
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP-DIVNYNTVLATLCKNGKADQ 421

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           A  I  ++ E G  PN ++Y ++ + +  +     AL +  E+                +
Sbjct: 422 ALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEM----------------M 465

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
              + PDE   +++     R     +A E++  M      P+   Y  + +
Sbjct: 466 SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLL 516



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 131/302 (43%), Gaps = 21/302 (6%)

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T ++K +    R  + +  L  +        +PD +  T ++       ++ +A +V+  
Sbjct: 90  TQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEI 149

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           + + G P +   YN L+ G+C+  +ID A  +L  M       PD V+YNI+I       
Sbjct: 150 LEKFGQP-DVFAYNALINGFCKMNRIDDATRVLDRMR-SKDFSPDTVTYNIMIGSLCSRG 207

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               AL   N++ +    PT I+YT L++A  L      A K+ DEML    +K D+  +
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG-LKPDMFTY 266

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-LLLWKEIK 455
           N ++ G C+ G+V+ A  ++  ++  G  P+V +Y  L   +    K  E   L+ K   
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           E+C+                 P+      L     R     +A+ ++  M+E G+ P+  
Sbjct: 327 EKCD-----------------PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369

Query: 516 KY 517
            Y
Sbjct: 370 SY 371


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 194/458 (42%), Gaps = 34/458 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP +   ++++  L    +    ES+         V+K  D  I     PD   
Sbjct: 216 MMEQGVLPKILICNSIIKELCKMKEMDKAESI---------VQKMVDSGIA----PDLFT 262

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++         K  ++ +QM E G +P+ +TYN +I   + +   +  V V +++ 
Sbjct: 263 YSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMS 322

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENE 178
             G+   +    S + A    G    A+ I  +M  +  + D+  I     L  Y++  +
Sbjct: 323 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDI--ISYSTMLHGYATATD 380

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
               D   +F  +L              K  APN  ++  L+  Y   G +   + +   
Sbjct: 381 SCLADVHNIFNLMLT-------------KGIAPNKHVFNILINAYARCGMMDKAMLIFED 427

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M   ++    PD VT+ TV+S+L + G +D A      M  IGVP +   Y  L++G C 
Sbjct: 428 M---QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCN 484

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ KAKEL+ EM +     P V  ++ +I+        A      + M   G  P  +
Sbjct: 485 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVV 544

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++ +LM+ + L    + A  + D M     ++ +   +  LV+GYC+ G +++A  +   
Sbjct: 545 TFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRD 603

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           M   G  P    Y  + +G+  AR+   A  ++ E+ E
Sbjct: 604 MLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 641



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/482 (22%), Positives = 199/482 (41%), Gaps = 97/482 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P+   +++++   + SG     ESV++F       ++ S   ++    P    
Sbjct: 286 MVEAGTRPNSITYNSLIHGYSISGMWN--ESVRVF-------KQMSSCGVI----PTVDN 332

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLER 118
            N+ ++A    G+  +   +FD M   G KPD+++Y+ M+   A A+   L  +  +   
Sbjct: 333 CNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNL 392

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIR 166
           +L  GI      F  L+ AY   G ++ A  I + M+                 +C+I  
Sbjct: 393 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI-- 450

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                       G  DD    F  ++   + PS               +Y  L++G  N 
Sbjct: 451 ------------GRLDDALHKFNHMVDIGVPPSEA-------------VYGCLIQGCCNH 485

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G +     ++  M  ++     P    ++++++ L K G +   + ++  M + G   N 
Sbjct: 486 GELVKAKELISEMMNKD--IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNV 543

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALT 343
           +T+N L++GYC    +++A  LL  MA    IEP+   Y  L+DG+     IDD   ALT
Sbjct: 544 VTFNSLMEGYCLVGNMEEAFALLDAMAS-IGIEPNCYIYGTLVDGYCKNGRIDD---ALT 599

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP---------------- 387
            F +M  +G+ PT + Y+ ++     + +   A K+F EM+                   
Sbjct: 600 VFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLC 659

Query: 388 ------------------RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                              VK DI+ +N+++    ++G  +EAK + + +   G  PN+ 
Sbjct: 660 RNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQ 719

Query: 430 TY 431
           TY
Sbjct: 720 TY 721



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 194/457 (42%), Gaps = 80/457 (17%)

Query: 67  ACANLGKPKKFLQLFDQMHEFG----AKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           AC +   P   ++LF +M  +     + P + TYN++I    R  R  L + ++ R+L+ 
Sbjct: 128 ACGD--APALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKN 185

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+     ++ SL+  +V  G+++ A  +   M E                     +G   
Sbjct: 186 GLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMME---------------------QG--- 220

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                                +LPK    NS I   L K  M E   ++++     +++ 
Sbjct: 221 ---------------------VLPKILICNS-IIKELCK--MKEMDKAESI-----VQKM 251

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D+   PD  TY+ ++  L K+ +MD+A +VL +M   G   N ITYN L+ GY      
Sbjct: 252 VDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMW 311

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           +++  + ++M+    I P V + N  I        +  A   F+ M  +G  P  ISY+T
Sbjct: 312 NESVRVFKQMSSCGVI-PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 370

Query: 363 LMKAFALSSQPKLA--NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           ++  +A ++   LA  + +F+ ML    +  +   +N+L+  Y R G++++A  I E M+
Sbjct: 371 MLHGYATATDSCLADVHNIFNLMLTK-GIAPNKHVFNILINAYARCGMMDKAMLIFEDMQ 429

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  P+  T+ ++ + +    +  +AL  +  +             D  +PP     E 
Sbjct: 430 NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM------------VDIGVPP----SEA 473

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           +   L   C       KA E+++ M    IPP   KY
Sbjct: 474 VYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 510



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 117/560 (20%), Positives = 216/560 (38%), Gaps = 92/560 (16%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+  D P  +++LF    KR+ +++ P     S P    YN +++    + +P   L +
Sbjct: 126 SAACGDAPALAIELF----KRMDRWACP---RHSPPTIHTYNILIDCYRRVHRPDLGLAI 178

Query: 81  FDQMHEFGAKPDVLTYNVMIKLC--ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
             ++ + G  PD  +Y+++          + H L      ++E G+   +    S++   
Sbjct: 179 VGRLLKNGLGPDDFSYSLIYGFVKDGEVDKAHCLFL---EMMEQGVLPKILICNSIIKEL 235

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG-----DDDDDDEVFEKLLP 193
               +++ AE+IVQ M +            DL  YS   +G       D  + V E+++ 
Sbjct: 236 CKMKEMDKAESIVQKMVDSG-------IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 288

Query: 194 NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR-----QEDNASH 248
                            PNS  Y +L+ GY   G  +++VR+   M         DN + 
Sbjct: 289 AGTR-------------PNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNS 335

Query: 249 ---------------------------PDHVTYTTVVSALVKA--GSMDRARQVLAEMTR 279
                                      PD ++Y+T++     A    +     +   M  
Sbjct: 336 FIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT 395

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G+  N+  +NIL+  Y +   +DKA  +  +M +   I PD V++  +I     I    
Sbjct: 396 KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI-PDTVTFATVISSLCRIGRLD 454

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            AL  FN M   G+ P++  Y  L++      +   A ++  EM+        +  ++ +
Sbjct: 455 DALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 514

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           +   C+ G V E K I++ M + G  PNV T+ SL  G  L     EA  L         
Sbjct: 515 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-------- 566

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                   D+     ++P+  +   L D   +      AL +   M   G+ P    Y  
Sbjct: 567 --------DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 618

Query: 520 IYVEMHSRMFTSKHASQARQ 539
           I   +H  +F ++  + A++
Sbjct: 619 I---LHG-LFQARRTTAAKK 634


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 207/483 (42%), Gaps = 54/483 (11%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           ++S     A   ++NA    GKP +   +F  + E G KP ++TY  ++    R  R   
Sbjct: 54  NNSCQTVHARTKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKS 113

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--------------- 156
           +  +L ++ + G+        +++ A+   G ++ A  I Q M+E               
Sbjct: 114 IPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIK 173

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDE--------VFEKLLPNSINPSSEPPLLPKT 208
           G   V +    + L +   ++E    +D            +K L  + N   +  ++   
Sbjct: 174 GFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHK--MVASG 231

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             P+   Y T+ + Y   G      R++  M+    N   P+  T   ++S   K G+M 
Sbjct: 232 IQPDVVTYNTMARAYAQNGETEKAERLILKMQY---NKVKPNERTCGIIISGYCKEGNMT 288

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A + L  M  +GV  N + +N L+KGY      +   E L  M ++  I+PDVV+++ +
Sbjct: 289 EALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLM-EEFGIKPDVVTFSTI 347

Query: 329 IDGFILIDDSAGAL----TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           ++ +     SAG +      FN+M   GI P   +Y+ L K +  + QP+ A  +   M 
Sbjct: 348 MNAW----SSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMS 403

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           +   V+ ++V +  ++ G+C  G ++ A  + E+M E G  PN+ TY +L  G   A++P
Sbjct: 404 KYG-VQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQP 462

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            +A  +   ++ER  V                P+   +  +AD       F++A  I+  
Sbjct: 463 WKAEEILSTMEERGVV----------------PEMSTMQLVADAWRAIGLFKEANRILNG 506

Query: 505 MEE 507
            EE
Sbjct: 507 SEE 509



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 202/457 (44%), Gaps = 77/457 (16%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P +  ++T+V+ L            K F  +   + K +D  +    KPD+   NA+
Sbjct: 90  GHKPTLITYTTLVAALTRQ---------KRFKSIPALLSKVADNGM----KPDSILLNAM 136

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK----------------------- 101
           +NA ++ GK  + +++F +M E+G KP   TYN +IK                       
Sbjct: 137 INAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDEN 196

Query: 102 -----------LCARASRKHL--LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
                      + A  ++K L     VL +++  GI   + T+ ++  AY   G+ E AE
Sbjct: 197 VKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAE 256

Query: 149 TIVQAMREGR----RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
            ++  M+  +       C II    +  Y    EG+  +      ++    ++       
Sbjct: 257 RLILKMQYNKVKPNERTCGII----ISGYCK--EGNMTEALRFLYRMKELGVH------- 303

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                 PN  ++ +L+KGY++    +DT  +  A+   E+    PD VT++T+++A   A
Sbjct: 304 ------PNPVVFNSLIKGYLD---ATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSA 354

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G MD   ++  +M + G+  +   Y+IL KGY +  Q  KA+ LL  M+    ++ +VV 
Sbjct: 355 GLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYG-VQTNVVI 413

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +  +I G+        A +   +M   G +P   +Y TL+  +  + QP  A ++   M 
Sbjct: 414 FTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTM- 472

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            +  V  ++    ++ + +  +GL +EA RI+   +E
Sbjct: 473 EERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSEE 509



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 148/329 (44%), Gaps = 23/329 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    YTTL+     + R      +L    +  DN   PD +    +++A   +G +D A
Sbjct: 93  PTLITYTTLVAALTRQKRFKSIPALLS---KVADNGMKPDSILLNAMINAFSDSGKVDEA 149

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M   G      TYN L+KG+    +  ++ +LL  M  D  ++P+  +YNILI 
Sbjct: 150 MKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQ 209

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            +        A    ++M A GI P  ++Y T+ +A+A + + + A ++  +M  + +VK
Sbjct: 210 AWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYN-KVK 268

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG---EA 447
            +     +++ GYC+ G + EA R + RMKE G +PN   + SL  G   A       EA
Sbjct: 269 PNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEA 328

Query: 448 LLLWKE--IKERCEVKKEGVNADSD--------------LPPPLKPDEELLDALADICVR 491
           L L +E  IK         +NA S               +   ++PD      LA   VR
Sbjct: 329 LTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVR 388

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           A   RKA  ++  M ++G+  N   +  I
Sbjct: 389 AGQPRKAESLLTSMSKYGVQTNVVIFTTI 417



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 126/270 (46%), Gaps = 18/270 (6%)

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           +N+    H   T +++AL+  G    A+ V   +T  G     ITY  L+    +Q +  
Sbjct: 54  NNSCQTVHAR-TKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFK 112

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
               LL ++AD+  ++PD +  N +I+ F        A+  F +M+  G  PT  +Y TL
Sbjct: 113 SIPALLSKVADNG-MKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTL 171

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +K F +  +P  + K+ + M +D  VK +   +N+L++ +C    +EEA  ++ +M  +G
Sbjct: 172 IKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASG 231

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             P+V TY ++A   +   + GE      E  ER  +K +           +KP+E    
Sbjct: 232 IQPDVVTYNTMARAYA---QNGET-----EKAERLILKMQ--------YNKVKPNERTCG 275

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPN 513
            +     +     +AL  +  M+E G+ PN
Sbjct: 276 IIISGYCKEGNMTEALRFLYRMKELGVHPN 305


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 169/385 (43%), Gaps = 55/385 (14%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   Y  +++  +N+GK ++  +LF++M E G + DV  Y  +I    R+      + + 
Sbjct: 298 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLF 357

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + + + G+     T+ +L+      G +E A+ +V  M                     +
Sbjct: 358 DEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEM---------------------Q 396

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +G D              +NP                I+ TL+ GY   G V + +R+ 
Sbjct: 397 GKGID--------------LNPV---------------IFNTLIDGYCESGMVDEALRLQ 427

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M   E      D   Y ++ S L K    D A+ +L  M   GV  N +++  L+  Y
Sbjct: 428 VVM---EKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIY 484

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++    +AK + REM +   + P++++YN+LIDG+    +   A    +E+  RG+ P 
Sbjct: 485 CKEGNFVEAKRVFREMEEKGNV-PNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 543

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             + T+L+    +  +  +A K+FDEM +   V  ++V +  ++ G  + G  EEA ++ 
Sbjct: 544 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVP-NVVTYTAMISGLSKDGRSEEAFKLY 602

Query: 417 ERMKENGFYPNVATYGSLANGISLA 441
           + MKE G  P+   Y SL   +  A
Sbjct: 603 DEMKETGLTPDDTVYSSLVGSLHSA 627



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 206/463 (44%), Gaps = 52/463 (11%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARA----SRKHLLVFVLERILEMGITL 126
           G+    L+ F +M     +  V +  +++  LC R      RK     +++ +   G+  
Sbjct: 208 GQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRK-----LMDEVAAKGVKA 262

Query: 127 CMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
            + T+ + +  Y    DL  +AE +    +EG    C ++    L  +   N G  ++  
Sbjct: 263 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGV--ACNVVT-YTLLIHGFSNIGKIEEAQ 319

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            +FE++    I               +  +YT+++      G V   + +   M    D 
Sbjct: 320 RLFEEMREKGIEA-------------DVYVYTSIISCNCRSGNVKRALVLFDEMT---DK 363

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P   TY  ++  + KAG M+ A+ ++ EM   G+  N + +N L+ GYC+   +D+A
Sbjct: 364 GLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEA 423

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRARGIAPTKISYTTL 363
              L+ + +   +E DV +YN +  G   ++  D A  L F   M  RG++P  +S+TTL
Sbjct: 424 LR-LQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLF--SMVERGVSPNTMSFTTL 480

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +  +        A +VF EM     V  +I+ +N+L++GY + G ++EA ++ + ++  G
Sbjct: 481 IDIYCKEGNFVEAKRVFREMEEKGNVP-NIITYNVLIDGYSKRGNMKEAHKLKDELENRG 539

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             P+V T  SL +G  +  K   AL L+ E+ +R             L P +     ++ 
Sbjct: 540 LIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQR------------GLVPNVVTYTAMIS 587

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
            L+    +     +A ++   M+E G+ P+ T Y  +   +HS
Sbjct: 588 GLS----KDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHS 626


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 194/458 (42%), Gaps = 34/458 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP +   ++++  L    +    ES+         V+K  D  I     PD   
Sbjct: 236 MMEQGVLPKILICNSIIKELCKMKEMDKAESI---------VQKMVDSGIA----PDLFT 282

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++         K  ++ +QM E G +P+ +TYN +I   + +   +  V V +++ 
Sbjct: 283 YSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMS 342

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENE 178
             G+   +    S + A    G    A+ I  +M  +  + D+  I     L  Y++  +
Sbjct: 343 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDI--ISYSTMLHGYATATD 400

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
               D   +F  +L              K  APN  ++  L+  Y   G +   + +   
Sbjct: 401 SCLADVHNIFNLMLT-------------KGIAPNKHVFNILINAYARCGMMDKAMLIFED 447

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M   ++    PD VT+ TV+S+L + G +D A      M  IGVP +   Y  L++G C 
Sbjct: 448 M---QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCN 504

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ KAKEL+ EM +     P V  ++ +I+        A      + M   G  P  +
Sbjct: 505 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVV 564

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++ +LM+ + L    + A  + D M     ++ +   +  LV+GYC+ G +++A  +   
Sbjct: 565 TFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRD 623

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           M   G  P    Y  + +G+  AR+   A  ++ E+ E
Sbjct: 624 MLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 661



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/482 (22%), Positives = 199/482 (41%), Gaps = 97/482 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P+   +++++   + SG     ESV++F       ++ S   ++    P    
Sbjct: 306 MVEAGTRPNSITYNSLIHGYSISGMWN--ESVRVF-------KQMSSCGVI----PTVDN 352

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLER 118
            N+ ++A    G+  +   +FD M   G KPD+++Y+ M+   A A+   L  +  +   
Sbjct: 353 CNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNL 412

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIR 166
           +L  GI      F  L+ AY   G ++ A  I + M+                 +C+I  
Sbjct: 413 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI-- 470

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                       G  DD    F  ++   + PS               +Y  L++G  N 
Sbjct: 471 ------------GRLDDALHKFNHMVDIGVPPSEA-------------VYGCLIQGCCNH 505

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G +     ++  M  ++     P    ++++++ L K G +   + ++  M + G   N 
Sbjct: 506 GELVKAKELISEMMNKD--IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNV 563

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALT 343
           +T+N L++GYC    +++A  LL  MA    IEP+   Y  L+DG+     IDD   ALT
Sbjct: 564 VTFNSLMEGYCLVGNMEEAFALLDAMAS-IGIEPNCYIYGTLVDGYCKNGRIDD---ALT 619

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP---------------- 387
            F +M  +G+ PT + Y+ ++     + +   A K+F EM+                   
Sbjct: 620 VFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLC 679

Query: 388 ------------------RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                              VK DI+ +N+++    ++G  +EAK + + +   G  PN+ 
Sbjct: 680 RNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQ 739

Query: 430 TY 431
           TY
Sbjct: 740 TY 741



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 194/457 (42%), Gaps = 80/457 (17%)

Query: 67  ACANLGKPKKFLQLFDQMHEFG----AKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           AC +   P   ++LF +M  +     + P + TYN++I    R  R  L + ++ R+L+ 
Sbjct: 148 ACGD--APALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKN 205

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+     ++ SL+  +V  G+++ A  +   M E                     +G   
Sbjct: 206 GLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMME---------------------QG--- 240

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                                +LPK    NS I   L K  M E   ++++     +++ 
Sbjct: 241 ---------------------VLPKILICNS-IIKELCK--MKEMDKAESI-----VQKM 271

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D+   PD  TY+ ++  L K+ +MD+A +VL +M   G   N ITYN L+ GY      
Sbjct: 272 VDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMW 331

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           +++  + ++M+    I P V + N  I        +  A   F+ M  +G  P  ISY+T
Sbjct: 332 NESVRVFKQMSSCGVI-PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 390

Query: 363 LMKAFALSSQPKLA--NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           ++  +A ++   LA  + +F+ ML    +  +   +N+L+  Y R G++++A  I E M+
Sbjct: 391 MLHGYATATDSCLADVHNIFNLMLTKG-IAPNKHVFNILINAYARCGMMDKAMLIFEDMQ 449

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  P+  T+ ++ + +    +  +AL  +  +             D  +PP     E 
Sbjct: 450 NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM------------VDIGVPP----SEA 493

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           +   L   C       KA E+++ M    IPP   KY
Sbjct: 494 VYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 530



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 117/560 (20%), Positives = 216/560 (38%), Gaps = 92/560 (16%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+  D P  +++LF    KR+ +++ P     S P    YN +++    + +P   L +
Sbjct: 146 SAACGDAPALAIELF----KRMDRWACP---RHSPPTIHTYNILIDCYRRVHRPDLGLAI 198

Query: 81  FDQMHEFGAKPDVLTYNVMIKLC--ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
             ++ + G  PD  +Y+++          + H L      ++E G+   +    S++   
Sbjct: 199 VGRLLKNGLGPDDFSYSLIYGFVKDGEVDKAHCLFL---EMMEQGVLPKILICNSIIKEL 255

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG-----DDDDDDEVFEKLLP 193
               +++ AE+IVQ M +            DL  YS   +G       D  + V E+++ 
Sbjct: 256 CKMKEMDKAESIVQKMVDSG-------IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 308

Query: 194 NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR-----QEDNASH 248
                            PNS  Y +L+ GY   G  +++VR+   M         DN + 
Sbjct: 309 AGTR-------------PNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNS 355

Query: 249 ---------------------------PDHVTYTTVVSALVKA--GSMDRARQVLAEMTR 279
                                      PD ++Y+T++     A    +     +   M  
Sbjct: 356 FIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT 415

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G+  N+  +NIL+  Y +   +DKA  +  +M +   I PD V++  +I     I    
Sbjct: 416 KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI-PDTVTFATVISSLCRIGRLD 474

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            AL  FN M   G+ P++  Y  L++      +   A ++  EM+        +  ++ +
Sbjct: 475 DALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 534

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           +   C+ G V E K I++ M + G  PNV T+ SL  G  L     EA  L         
Sbjct: 535 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-------- 586

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                   D+     ++P+  +   L D   +      AL +   M   G+ P    Y  
Sbjct: 587 --------DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 638

Query: 520 IYVEMHSRMFTSKHASQARQ 539
           I   +H  +F ++  + A++
Sbjct: 639 I---LHG-LFQARRTTAAKK 654


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 132/278 (47%), Gaps = 18/278 (6%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           + N   PD +T+ ++++   + G  + AR +  EM+   +  +  +YN LL   C+  Q+
Sbjct: 331 QRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQM 390

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D A E+L +M    +I P+VVSY+ +IDGF        AL  F EMR   IA  ++SY T
Sbjct: 391 DLAFEILAQMPAK-RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNT 449

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  +    + + A  +  EM     +K D+V +N L+ GY + G  +E K++   MK  
Sbjct: 450 LLSIYTKVGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKRE 508

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
              PN+ TY +L +G S      EA+ +++E K                   L+ D  L 
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKS----------------AGLRADVVLY 552

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            AL D   +      A+ ++  M + GI PN   Y  I
Sbjct: 553 SALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSI 590



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 172/379 (45%), Gaps = 62/379 (16%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR--KHLLVFVLE 117
           A++A+++A    G  ++ + +F+ M E+G +P+++TYN +I  C +     K +  F  +
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF-FD 328

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
            +    +     TF SL+A     G  E A  +   M   R        E D+  Y++  
Sbjct: 329 EMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRI-------EQDVFSYNTLL 381

Query: 178 EG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +        D  FE L        ++ P   K   PN   Y+T++ G+   GR  + + +
Sbjct: 382 DAICKGGQMDLAFEIL--------AQMP--AKRIMPNVVSYSTVIDGFAKAGRFDEALNL 431

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G MR         D V+Y T++S   K G  + A  +L EM  +G+  + +TYN LL G
Sbjct: 432 FGEMRYLNIAL---DRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGG 488

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +Q + D+ K++  EM  +  + P++++Y+ LIDG+     S G L             
Sbjct: 489 YGKQGKYDEVKKVFAEMKRE-HVLPNLLTYSTLIDGY-----SKGGLY------------ 530

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
                             K A +VF E  +   ++ D+V ++ L++  C+ GLV  A  +
Sbjct: 531 ------------------KEAMEVFRE-FKSAGLRADVVLYSALIDALCKNGLVGSAVSL 571

Query: 416 IERMKENGFYPNVATYGSL 434
           I+ M + G  PNV TY S+
Sbjct: 572 IDEMTKEGISPNVVTYNSI 590



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 180/424 (42%), Gaps = 50/424 (11%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           K+V KF D    +  +PD   +N++L  C+  G  +    LFD+M     + DV +YN +
Sbjct: 321 KQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTL 380

Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
           +    +  +  L   +L ++    I   + ++ +++  +   G  + A  +   MR    
Sbjct: 381 LDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNI 440

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
            + ++     L  Y+    G  ++  ++  ++    I               +   Y  L
Sbjct: 441 ALDRVSYNTLLSIYT--KVGRSEEALDILREMASVGIK-------------KDVVTYNAL 485

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + GY  +G+  +  ++   M+R+      P+ +TY+T++    K G    A +V  E   
Sbjct: 486 LGGYGKQGKYDEVKKVFAEMKREH---VLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKS 542

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF---ILID 336
            G+ A+ + Y+ L+   C+   +  A  L+ EM  +  I P+VV+YN +ID F     ++
Sbjct: 543 AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGRSATME 601

Query: 337 DSA-----GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
            SA     G+L F +       A ++++ T   +   L  Q  L ++  + M +D +   
Sbjct: 602 RSADYSNGGSLPFSSS------ALSELTETEGNRVIQLFGQ--LTSEGNNRMTKDCK--- 650

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
                    EG   +  + E   +  +M +    PNV T+ ++ N  S      +A +L 
Sbjct: 651 ---------EGMQELSCILE---VFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLL 698

Query: 452 KEIK 455
           +E++
Sbjct: 699 EELR 702



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 162/380 (42%), Gaps = 23/380 (6%)

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
            V  M  GR       R     + + +N  D   DDE+F  L+      S E  L     
Sbjct: 144 FVSKMHFGRPKTTMATRHSSAAEDALQNAIDFSGDDEMFHSLM-----LSFESKLC---- 194

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
              S   T +++   N G     V       ++E   +    +  + ++S L + G +  
Sbjct: 195 --GSDDCTYIIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLA-SAMISTLGRYGKVTI 251

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A+++       G       ++ L+  Y +    ++A  +   M +   + P++V+YN +I
Sbjct: 252 AKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG-LRPNLVTYNAVI 310

Query: 330 D----GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           D    G +     A    FF+EM+   + P +I++ +L+   +     + A  +FDEM  
Sbjct: 311 DACGKGGMEFKQVA---KFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEM-S 366

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
           + R++ D+ ++N L++  C+ G ++ A  I+ +M      PNV +Y ++ +G + A +  
Sbjct: 367 NRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFD 426

Query: 446 EALLLWKEIKE-RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
           EAL L+ E++     + +   N    +   +   EE LD L ++       +  +   A 
Sbjct: 427 EALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVGIKKDVVTYNAL 485

Query: 505 MEEHGIPPNKTKYKKIYVEM 524
           +  +G      + KK++ EM
Sbjct: 486 LGGYGKQGKYDEVKKVFAEM 505


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 186/438 (42%), Gaps = 39/438 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+LP VK +  +++     G          F+VV K + + S+  +          YN +
Sbjct: 237 GFLPTVKTYGAIINGFCKKGK---------FEVVDKLLVEMSERGL----DVSIHIYNNI 283

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++A    G   +       M + G  PD+ TYN++I         H    +LE+ ++ G+
Sbjct: 284 IDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGL 343

Query: 125 TLCMTTFQSLVAAYVGFGD-LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
                ++  L+  Y   G+ L   + +++    G +         DL  Y++   G    
Sbjct: 344 LPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKP--------DLVTYAALIHG---- 391

Query: 184 DDEVFEKLLPNSINP--SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                  ++   ++   +    ++ K   P++ IY  LM G   +GR+     +L  M  
Sbjct: 392 ------LIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEML- 444

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             D    PD     T+V   ++ G  + A+++       G+    + YN ++KGYC+   
Sbjct: 445 --DQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGM 502

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +  A    + M       PD  +Y+ +IDG+I ++D  GAL  F  M      P  ++YT
Sbjct: 503 MKDALLCFKRMIQGLH-SPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYT 561

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+  F LS     A K F +ML   R+K ++V + +L+  +C+   + +A    E+M  
Sbjct: 562 LLINGFCLSGDINRAEKTFKQML-SLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLM 620

Query: 422 NGFYPNVATYGSLANGIS 439
               PN  TY  L NG++
Sbjct: 621 EKCLPNDVTYNYLMNGLT 638



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 171/388 (44%), Gaps = 24/388 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN +++     G  ++   LF ++   G  P V TY  +I    +  +  ++  +
Sbjct: 205 PNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKL 264

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFG-DLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           L  + E G+ + +  + +++ A    G  +E A+T+   ++ G    C    + D+  Y+
Sbjct: 265 LVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSG----C----DPDMATYN 316

Query: 175 SENEGDDDDDD-EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               G     +    E+LL  +I          +   PN   YT L+  Y  +G   + +
Sbjct: 317 ILITGSCSCGEVHKAEQLLEQAIK---------RGLLPNKVSYTPLIHNYCKQG---EYL 364

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R L  + +  +    PD VTY  ++  L+ AG +D A  V  +M   GV  +   YN+L+
Sbjct: 365 RALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLM 424

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C++ ++  AK LL EM D   + PD      L+DGFI   D   A   F     +GI
Sbjct: 425 SGLCKKGRLPAAKVLLAEMLDQ-NVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGI 483

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P  + Y  ++K +      K A   F  M++      D   ++ +++GY +M  +  A 
Sbjct: 484 DPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLH-SPDEFTYSTIIDGYIKMNDLHGAL 542

Query: 414 RIIERMKENGFYPNVATYGSLANGISLA 441
           R+   M +    PNV TY  L NG  L+
Sbjct: 543 RMFGLMVKGACKPNVVTYTLLINGFCLS 570



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/451 (20%), Positives = 184/451 (40%), Gaps = 80/451 (17%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           ++ G LP+  +++ ++      G     E ++  D+++K   +   PD+V+        Y
Sbjct: 339 IKRGLLPNKVSYTPLIHNYCKQG-----EYLRALDLLIKMSERGHKPDLVT--------Y 385

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
            A+++     G+    L + ++M E G  PD   YNV++    +  R      +L  +L+
Sbjct: 386 AALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLD 445

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
             +        +LV  ++  GD E A+                                 
Sbjct: 446 QNVAPDAFITATLVDGFIRHGDFEEAK--------------------------------- 472

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
               ++FE  +   I+P                 Y  ++KGY   G + D    L   +R
Sbjct: 473 ----KLFELTIEKGIDPGVVG-------------YNAMIKGYCKFGMMKDA---LLCFKR 512

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                  PD  TY+T++   +K   +  A ++   M +     N +TY +L+ G+C    
Sbjct: 513 MIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGD 572

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           I++A++  ++M    +++P+VV+Y ILI  F    +   A +FF +M      P  ++Y 
Sbjct: 573 INRAEKTFKQML-SLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYN 631

Query: 362 TLMKA------FALSSQ------PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            LM        F +S+Q        L  + F  M+ D   +    ++N ++   C+  +V
Sbjct: 632 YLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDR-RAASYNSILICLCQHKMV 690

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISL 440
           + A  + ++M   GF P+  +  +L +G+ L
Sbjct: 691 KHALHLRDKMMSKGFLPDPVSLVALLHGLCL 721



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 133/318 (41%), Gaps = 24/318 (7%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++KG   EG+V D  +++    ++      P+ V Y T++    K G  +RA  +  E+ 
Sbjct: 178 MVKGLCKEGKVEDGWKLI---EKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELK 234

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G      TY  ++ G+C++ + +   +LL EM++   ++  +  YN +ID        
Sbjct: 235 MKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERG-LDVSIHIYNNIIDAQFKHGCR 293

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A      M   G  P   +Y  L+       +   A ++ ++ ++   +  + V++  
Sbjct: 294 IEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLP-NKVSYTP 352

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           L+  YC+ G    A  ++ +M E G  P++ TY +L +G+ +A +   AL +  ++ E+ 
Sbjct: 353 LIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKG 412

Query: 459 --------EVKKEGVNADSDLPPP-----------LKPDEELLDALADICVRAAFFRKAL 499
                    V   G+     LP             + PD  +   L D  +R   F +A 
Sbjct: 413 VLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAK 472

Query: 500 EIVACMEEHGIPPNKTKY 517
           ++     E GI P    Y
Sbjct: 473 KLFELTIEKGIDPGVVGY 490



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +D+A E  R         PDV S N L++  +       A   ++EM  R       +  
Sbjct: 117 VDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVC 176

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            ++K      + +   K+ ++  R  R  + +IV +N L++GYC+ G  E A  + + +K
Sbjct: 177 IMVKGLCKEGKVEDGWKLIEK--RWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELK 234

Query: 421 ENGFYPNVATYGSLANGIS 439
             GF P V TYG++ NG  
Sbjct: 235 MKGFLPTVKTYGAIINGFC 253


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 191/419 (45%), Gaps = 26/419 (6%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG---KPKKFLQLFDQMHEFGAKPDVLTY 96
           K +  F +   +   KP   +YN +LNA   L    + + F + F+ M      P++ TY
Sbjct: 98  KALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMD---VSPNLQTY 154

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           N++IK+  +  +    + +L+ +    +   + ++ +L+   V  GDL  A  +   M  
Sbjct: 155 NILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEM-- 212

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
             R V   +   ++        GD D   E++E+L+ +             +  PN   Y
Sbjct: 213 SVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDC------------SVYPNVVTY 260

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++ G    GR  +++ +     R   N    D  TY++++  L +AG++D A +V  E
Sbjct: 261 NIMINGLCKCGRFDESLEI---WERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKE 317

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           +    +  + +T+N +L G+C+  +I ++ EL   M  +      VVSYNILI G     
Sbjct: 318 IVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENC--QTVVSYNILIKGLFENG 375

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A++ +  +  +G  P   +Y  L+     + +   A K+F E    P  K+D  A+
Sbjct: 376 KVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPG-KLDAYAY 434

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           + +V+G C+ G ++EA  I+ +M + G+  +      L NG   A K  +A+  ++E++
Sbjct: 435 SSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREME 493



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 114/512 (22%), Positives = 226/512 (44%), Gaps = 53/512 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P V ++ T+++ +   GD   + ++K+FD       + S   +V+D       YN +++ 
Sbjct: 184 PDVFSYGTLINGMVKVGD--LLGALKVFD-------EMSVRGVVAD----VTCYNMLIDG 230

Query: 68  CANLGKPKKFLQLFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
               G   K  ++++++  +    P+V+TYN+MI    +  R    + + ER+ +     
Sbjct: 231 FFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREK 290

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            M T+ SL+      G+++ A  + + + E    V  +     L  +    +       E
Sbjct: 291 DMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGK-----IKE 345

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
            FE  +           ++ K        Y  L+KG    G+V + + +   + ++    
Sbjct: 346 SFELWM-----------VMGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKK---G 391

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P+  TY  ++  L K G +++A ++  E        +   Y+ ++ G C++ ++D+A 
Sbjct: 392 CRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAI 451

Query: 307 ELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            ++ +M     K++P V   N LI+GF+       A+ FF EM  +G +PT +SY TL+K
Sbjct: 452 SIVNQMDKRGYKLDPHVC--NPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIK 509

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
               + +   A     EML +   K D++  ++L++G C+   +E A  + ++  + GF 
Sbjct: 510 GLCKAERFSEAYSFVKEML-EKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFK 568

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           P++  Y  L +G+    K  +AL L+  +K             S   P L     L++ L
Sbjct: 569 PDITMYNILMHGLCSVCKLEDALQLYSHMKR------------STCVPNLVTRNTLMEGL 616

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                +   + KA EI  C+ + G+ P+   Y
Sbjct: 617 ----YKVRDYEKASEIWDCILKDGLHPDIISY 644



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 1/215 (0%)

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q+     P   +Y T+++A V+    DRA         + V  N  TYNIL+K  C++ Q
Sbjct: 107 QDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQ 166

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           I+KA  LL  M     ++PDV SY  LI+G + + D  GAL  F+EM  RG+      Y 
Sbjct: 167 IEKAISLLDWMWSQ-NLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYN 225

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+  F          ++++ +++D  V  ++V +N+++ G C+ G  +E+  I ERM +
Sbjct: 226 MLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTK 285

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N    ++ TY SL +G+  A     A+ ++KEI E
Sbjct: 286 NEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVE 320



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 139/369 (37%), Gaps = 68/369 (18%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   +NA+LN     GK K+  +L+  M +   +  V++YN++IK      +    + + 
Sbjct: 326 DAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQT-VVSYNILIKGLFENGKVEEAISIW 384

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E + + G     TT+  L+      G L  A  I +   +G         +LD   YSS 
Sbjct: 385 ELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPG-------KLDAYAYSSM 437

Query: 177 -----NEGDDDDDDEVFE-------KLLPNSINPSSEP---------------PLLPKTF 209
                 EG  D+   +         KL P+  NP                    +  K  
Sbjct: 438 VDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGC 497

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE-------------------------- 243
           +P    Y TL+KG     R S+    +  M  +E                          
Sbjct: 498 SPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALN 557

Query: 244 ------DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
                 D    PD   Y  ++  L     ++ A Q+ + M R     N +T N L++G  
Sbjct: 558 LWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLY 617

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +    +KA E+   +  D  + PD++SYNI I G       + A+ F N+   RGI PT 
Sbjct: 618 KVRDYEKASEIWDCILKDG-LHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTA 676

Query: 358 ISYTTLMKA 366
           +++  L++A
Sbjct: 677 VTWNILVRA 685



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 39/247 (15%)

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
           N SH  HV +  +      +  +    +++  +     P        ++K Y +    +K
Sbjct: 39  NKSHSAHVFHHILRRLAADSRLVSHVSRIVDIVKAQKCPCKEDVALTVIKAYAKNKMSNK 98

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGF-----------------------------ILI 335
           A +  + M D    +P V SYN L++ F                             ILI
Sbjct: 99  ALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILI 158

Query: 336 DDSA------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPR 388
             S        A++  + M ++ + P   SY TL+           A KVFDEM +R   
Sbjct: 159 KISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRG-- 216

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERM-KENGFYPNVATYGSLANGISLARKPGEA 447
           V  D+  +NML++G+ + G  ++ K I ER+ K+   YPNV TY  + NG+    +  E+
Sbjct: 217 VVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDES 276

Query: 448 LLLWKEI 454
           L +W+ +
Sbjct: 277 LEIWERM 283


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 212/476 (44%), Gaps = 58/476 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P V  ++T++     +GD   V+ + L   + +R  +FS+             
Sbjct: 265 MVMHGIMPTVITFNTMLDSCFKAGDLERVDKIWL--EMKRRNIEFSE-----------VT 311

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N  +  GK ++  +    M   G      ++N +I+   +         V + +L
Sbjct: 312 YNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEML 371

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI    +T+   + A   FG ++ A  ++ +M              D+  Y++   G 
Sbjct: 372 NAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAP-----------DVVSYNTLMHGY 420

Query: 181 DD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                  +   +F+ L   +INPS                Y TL+ G    G +      
Sbjct: 421 IKMRKFVEASLLFDDLKAGNINPSIV-------------TYNTLIDGLCESGNLE----- 462

Query: 236 LGAMRRQEDNAS---HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            GA R +E+  S   +PD +TYTT++   VK G++  A ++  EM R G+  +   Y   
Sbjct: 463 -GAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTR 521

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
             G  +    +KA  L  EM  +    PD+  YN+ IDG   + +   A+ F  ++   G
Sbjct: 522 TVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVG 581

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++YTT+++ +    + K+A  ++DEML   R+   ++ + +L+ G+ + G +E+A
Sbjct: 582 LVPDHVTYTTVIRGYLEKGRFKMARDLYDEML-SKRLSPSVITYFVLIHGHAKAGRLEQA 640

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
            +    MK+ G  PNV T+ +L +G+  A    EA       +  C++++EG++ +
Sbjct: 641 FQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAY------RYLCKMEEEGISPN 690



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 156/381 (40%), Gaps = 34/381 (8%)

Query: 11  KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD-----IVSDSKPDTAAYNAVL 65
           +AW      L A    G   +   +++ ++ + +F   D     + S + PD  +YN ++
Sbjct: 362 EAWGVTDEMLNA----GIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAPDVVSYNTLM 417

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT 125
           +    + K  +   LFD +      P ++TYN +I     +        + E +    I 
Sbjct: 418 HGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIY 477

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMR------EGRRDVCKIIRELDLED------- 172
             + T+ +L+  +V  G+L +A  I   M       +G     + + EL L D       
Sbjct: 478 PDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRL 537

Query: 173 ----YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF----APNSRIYTTLMKGYM 224
                + ++   D     V    L    N         K F     P+   YTT+++GY+
Sbjct: 538 HEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYL 597

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
            +GR      +   M  +  +   P  +TY  ++    KAG +++A Q   EM + GV  
Sbjct: 598 EKGRFKMARDLYDEMLSKRLS---PSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRP 654

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N +T+N LL G C+   ID+A   L +M ++  I P+  SY ILI     +D     +  
Sbjct: 655 NVMTHNALLHGMCKAGNIDEAYRYLCKMEEEG-ISPNKYSYTILISKHCDLDKWEEVVKL 713

Query: 345 FNEMRARGIAPTKISYTTLMK 365
           + EM  + I P   ++  L K
Sbjct: 714 YKEMLDKEIEPDGYTHRALFK 734


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 189/420 (45%), Gaps = 29/420 (6%)

Query: 36  DVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
           D+++ R+ +F  P       PD  AYN V+N     G+ +K   LF +M + G  P+V+T
Sbjct: 146 DILLLRMSEFGCP-------PDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVT 198

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAM 154
           Y  +I    +A        V +++++ G+     T+  L+  Y+  G   E+ + + +  
Sbjct: 199 YTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMS 258

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
             G    C  I    L DY  +N G   +    F+ +    I P             +  
Sbjct: 259 THGLEPDC--ITYALLLDYLCKN-GRCREARLFFDSMFRKGIKP-------------DVA 302

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           IY  L+ GY  +G +S+    L  M     N   P+   +  +  A  K   ++ A  + 
Sbjct: 303 IYAILLHGYATKGALSEMHSFLDLM---VGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIF 359

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M + G+  + +++  L+   C+  ++D A     +M ++  + P++  ++ L+ G   
Sbjct: 360 NKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEG-VTPNIFVFSSLVYGLCT 418

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
           +     A   F E+  +GI    + + TLM       +   A ++ D M+R   V+ +++
Sbjct: 419 VGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIR-VGVRPNVI 477

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++N LV G+C  G ++EA ++++ M  NG  PN  TY  L  G   AR+  +A  L++E+
Sbjct: 478 SYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREM 537



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 191/453 (42%), Gaps = 44/453 (9%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDG----PVESVKLFDVVVKR-----VRKFSDPDIVS 52
           L  GYL   K W  VV  L      G     +    L D + K       R F D     
Sbjct: 237 LIHGYLSTGK-WKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRK 295

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL- 111
             KPD A Y  +L+  A  G   +     D M   G  P+   +N+M   CA A +  + 
Sbjct: 296 GIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIM--FCAYAKKAMIE 353

Query: 112 -LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             + +  ++ + G++  + +F +L+ A    G ++  + ++Q  +     V   I     
Sbjct: 354 EAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVD--DAVLQFNQMINEGVTPNIFVFSS 411

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             Y     G  +  +E+F ++L   I               ++  + TLM    NEGRV 
Sbjct: 412 LVYGLCTVGKWEKAEELFFEVLDQGI-------------CVDAVFFNTLMCNLCNEGRVM 458

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  R++  M R       P+ ++Y T+V+     G +D A ++L  M   G+  N  TY 
Sbjct: 459 EAQRLIDLMIRV---GVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYT 515

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           ILL+GYC+  ++D A  L REM     + P V +YN ++ G        G  +  NE+  
Sbjct: 516 ILLRGYCKARRVDDAYSLFREMLMKG-VTPVVATYNTILHGLF----QTGRFSEANELYL 570

Query: 351 RGI-APTKI---SYTTLMKAFALSSQPKLANKVFDEML-RDPRVKVDIVAWNMLVEGYCR 405
             I + TK    +Y  ++     ++    A K+F  +  +DP  ++D V +N+++    +
Sbjct: 571 NMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDP--QLDSVTFNIMIGALLK 628

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            G  E+A  +   +   G  P+V TY  +A  +
Sbjct: 629 GGRKEDAMDLFATISAYGLVPDVVTYRLIAENL 661



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 126/548 (22%), Positives = 224/548 (40%), Gaps = 126/548 (22%)

Query: 16  VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA-AYNAVLNACANLG-- 72
           V++  A SG  G  E++KLFD            +++  ++P +  A+N +L   +  G  
Sbjct: 18  VIASRARSGSLGLDEALKLFD------------ELLHCARPASVRAFNQLLTVVSRAGCS 65

Query: 73  -KPKKFLQLFDQM-HEFGAK--PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
              ++ + LF +M  E  +K  P+  TY+++I    R  R           LE G     
Sbjct: 66  SASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGR-----------LEHG----- 109

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF 188
                    +  FG +         ++ G R    +I +L L+        D+  D    
Sbjct: 110 ---------FAAFGLI---------LKTGWRVNVIVISQL-LKGLCDAKRVDEATD---- 146

Query: 189 EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
             +L   ++    PP        +   Y T++ G+  EG+V     +   M    D    
Sbjct: 147 --ILLLRMSEFGCPP--------DVVAYNTVINGFFREGQVEKAYNLFLEMM---DQGIP 193

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+ VTYTTV+  L KA  +DRA+ V  +M   GV  +  TYN L+ GY    +  +  ++
Sbjct: 194 PNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQM 253

Query: 309 LREMADDAKIEPDVVSYNILIDGF-----------------------------ILIDDSA 339
           L EM+    +EPD ++Y +L+D                               IL+   A
Sbjct: 254 LEEMSTHG-LEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYA 312

Query: 340 --GALT----FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
             GAL+    F + M   G++P +  +  +  A+A  +  + A  +F++M R   +  D+
Sbjct: 313 TKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKM-RQQGLSPDV 371

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V++  L++  C++G V++A     +M   G  PN+  + SL  G+    K       W++
Sbjct: 372 VSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGK-------WEK 424

Query: 454 IKER-CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
            +E   EV  +G+  D+     L         + ++C       +A  ++  M   G+ P
Sbjct: 425 AEELFFEVLDQGICVDAVFFNTL---------MCNLCNEGRVM-EAQRLIDLMIRVGVRP 474

Query: 513 NKTKYKKI 520
           N   Y  +
Sbjct: 475 NVISYNTL 482



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 17/290 (5%)

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V +   M R+  +   P+  TY+ ++    + G ++        + + G   N I  + 
Sbjct: 71  VVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQ 130

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           LLKG C   ++D+A ++L     +    PDVV+YN +I+GF        A   F EM  +
Sbjct: 131 LLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQ 190

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           GI P  ++YTT++     +     A  VF +M+ D  VK D   +N L+ GY   G  +E
Sbjct: 191 GIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMI-DRGVKPDNGTYNCLIHGYLSTGKWKE 249

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
             +++E M  +G  P+  TY  L + +    +  EA L +                DS  
Sbjct: 250 VVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFF----------------DSMF 293

Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
              +KPD  +   L           +    +  M  +G+ PN+  +  ++
Sbjct: 294 RKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMF 343



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 133/351 (37%), Gaps = 41/351 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVV--------- 38
           M+  G  P++  +S++V  L   G             D G       F+ +         
Sbjct: 397 MINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGR 456

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V   ++  D  I    +P+  +YN ++      G+  +  +L D M   G KP+  TY +
Sbjct: 457 VMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTI 516

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +++   +A R      +   +L  G+T  + T+ +++      G    A  +   M   R
Sbjct: 517 LLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR 576

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                    + L      N    D+  ++F +L       S +P L   TF   + +   
Sbjct: 577 TKCDIYTYNIILNGLCKNNF--VDEAFKMFRRLC------SKDPQLDSVTF---NIMIGA 625

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+KG    GR  D + +   +         PD VTY  +   L++ GS+     + + M 
Sbjct: 626 LLKG----GRKEDAMDLFATISAY---GLVPDVVTYRLIAENLIEEGSLGEFDGLFSAME 678

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           + G   N    N L++    +  I +A   L ++ D+     +  + ++LI
Sbjct: 679 KSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKL-DEKNFSLEASTTSMLI 728


>gi|414886512|tpg|DAA62526.1| TPA: hypothetical protein ZEAMMB73_338715 [Zea mays]
          Length = 901

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 127/564 (22%), Positives = 237/564 (42%), Gaps = 76/564 (13%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P    ++T+++    SG+    E V    +V++ V            KPDT  YN +
Sbjct: 294 GVMPDTYTFNTLINIFGFSGNSAQAE-VLFASMVIRGV------------KPDTKTYNVM 340

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +   A++G  +  L+ + Q+   G  PD +TY +++++       H    V+E IL+ G 
Sbjct: 341 MTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKMVHKAEDVIEGILKAGS 400

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-----------DLEDY 173
            +   +   ++  YV  G L+ A    +    G+    K    +           + E  
Sbjct: 401 FVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKGVSSKNFSAIMDVFAGRGLWEEAEHI 460

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                GD ++ D V                            Y  ++K Y   G+     
Sbjct: 461 FCSERGDGNEKDIV---------------------------EYNVMIKAY---GQAKQYD 490

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R+       E++    D  TY +++      G   RA+++L +M   G      TY+ ++
Sbjct: 491 RVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAII 550

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           + Y +   + +A +L  EM   + +EP+V+ Y ILID F    +   AL + N +   GI
Sbjct: 551 RSYSRHCLVPEAIDLFNEM-KASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGI 609

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           +P  I  T+L+KA++  +  K A  ++  M  D     DI+A N ++  Y ++ +V EAK
Sbjct: 610 SPNHIVLTSLIKAYSKFNSWKEAQDLYSRM-NDMDGGPDIIASNAMLNLYAKLEMVTEAK 668

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            I + ++ N  + +  +Y ++A    L +  G   LL + I+   +++K G+ +D     
Sbjct: 669 EIFDSLRRNN-HADAVSYTTMA---YLYKSIG---LLSESIRITHKLQKSGLLSDC---- 717

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
                    +A+          R   E+V  M    IPP+ + ++ I+  + +   ++K 
Sbjct: 718 ------ASCNAVMACYGAKGNLRDCAELVHQMVVANIPPDASTFEMIFSLLKNGHVSTKE 771

Query: 534 ASQ---ARQDRRRERKRAAEAFKF 554
             Q   A  D ++  K+A  AF F
Sbjct: 772 ILQLESAYDDGKKSAKQAIIAFLF 795



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 21/197 (10%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE- 307
           PD V+  T V  L   G  D A  +           + +  +      C  + +D   + 
Sbjct: 183 PDEVSMNTFVRILKDEGRHDDALALFHSWCDGRFEVDFLDLD------CITVDLDGPMQF 236

Query: 308 LLREMADD------AKIEPD-------VVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           LL +M DD      A + P+       VV+YN+LID +        AL  F +M A G+ 
Sbjct: 237 LLADMYDDKIAAPAAGVAPERPRKPKLVVTYNVLIDLYGKAGKLKNALDMFLDMPAHGVM 296

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   ++ TL+  F  S     A  +F  M+    VK D   +N+++  +  +G +E   +
Sbjct: 297 PDTYTFNTLINIFGFSGNSAQAEVLFASMVIRG-VKPDTKTYNVMMTVFASIGDLEGVLK 355

Query: 415 IIERMKENGFYPNVATY 431
              +++  G +P+  TY
Sbjct: 356 YYCQIRNAGLHPDAVTY 372



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/382 (17%), Positives = 145/382 (37%), Gaps = 58/382 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    Y+A++ + +      + + LF++M   G +P+V+ Y ++I + A        + 
Sbjct: 540 EPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALH 599

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
               + + GI+       SL+ AY  F   + A+ +                      YS
Sbjct: 600 YSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDL----------------------YS 637

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             N+ D                         P   A N+     ++  Y     V++   
Sbjct: 638 RMNDMDGG-----------------------PDIIASNA-----MLNLYAKLEMVTEAKE 669

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +  ++RR     +H D V+YTT+       G +  + ++  ++ + G+ ++  + N ++ 
Sbjct: 670 IFDSLRRN----NHADAVSYTTMAYLYKSIGLLSESIRITHKLQKSGLLSDCASCNAVMA 725

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            Y  +  +    EL+ +M   A I PD  ++ ++    +L +             A    
Sbjct: 726 CYGAKGNLRDCAELVHQMV-VANIPPDASTFEMIFS--LLKNGHVSTKEILQLESAYDDG 782

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                   +   F+++     A ++  +ML  P+  +D  A+N+  + Y     VE+A  
Sbjct: 783 KKSAKQAIIAFLFSVAGMHDAALEICGKMLM-PQSTLDACAYNVCFKVYASSRKVEKAFS 841

Query: 415 IIERMKENGFYPNVATYGSLAN 436
           +   M++ G  P+ +T   LA 
Sbjct: 842 LFMWMRDLGLKPDTSTCNHLAT 863


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 194/466 (41%), Gaps = 71/466 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    Y+A++ A          + L ++M   G +P++ TY + I++  RA R      
Sbjct: 224 KPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYG 283

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+ + + G    + T+  L+ A    G L+ A+ +   MR                   
Sbjct: 284 ILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRAS----------------- 326

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                   S +P L+          Y TLM  + N G +    R
Sbjct: 327 ------------------------SHKPDLVT---------YITLMSKFGNYGDLETVKR 353

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               M   E +   PD VTYT +V AL K+G +D+A  +L  M   G+  N  TYN L+ 
Sbjct: 354 FWSEM---EADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLIS 410

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G     ++D+A EL   M +   + P   SY + ID +  + D   AL  F +M+ RGI 
Sbjct: 411 GLLNLRRLDEALELFNNM-ESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIM 469

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P+  +    + + A   + + A  +F++ + +  +  D V +NM+++ Y + G +++A +
Sbjct: 470 PSIAACNASLYSLAEMGRIREAKDIFND-IHNCGLSPDSVTYNMMMKCYSKAGQIDKATK 528

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M   G  P++    SL + +  A +  EA  ++  +K            D  L P 
Sbjct: 529 LLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLK------------DLKLAPT 576

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +     L+  L     +     KAL++   M+E G PPN   +  +
Sbjct: 577 VVTYNILITGLG----KEGKLLKALDLFGSMKESGCPPNTVTFNAL 618



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 198/479 (41%), Gaps = 76/479 (15%)

Query: 44  KFSDPDIVSDS---------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           K  DP+   D+          P  AA NA L + A +G+ ++   +F+ +H  G  PD +
Sbjct: 449 KLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSV 508

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV----------AAYVGFG-- 142
           TYN+M+K  ++A +      +L  +L  G    +    SL+           A+  FG  
Sbjct: 509 TYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRL 568

Query: 143 -DLEIAETIV--QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
            DL++A T+V    +  G     K+++ LDL  + S  E     +   F  LL + +  +
Sbjct: 569 KDLKLAPTVVTYNILITGLGKEGKLLKALDL--FGSMKESGCPPNTVTFNALL-DCLCKN 625

Query: 200 SEPPLLPKTF--------APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
               L  K F        +P+   Y T++ G + EGR          M++       PDH
Sbjct: 626 DAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKK----FLSPDH 681

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRI------------------------------- 280
           VT  T++  +VK G ++ A +++ E                                   
Sbjct: 682 VTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAE 741

Query: 281 GVPANRITYN-----ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           G+  N I  +      L++  C+Q +   AK+L  +        P   SYN L+DG +  
Sbjct: 742 GLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGC 801

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           + +  AL  F EM+  G  P   +Y  L+ A   S +     ++++EML     K +I+ 
Sbjct: 802 NITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRG-CKPNIIT 860

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            N+++    +   + +A  +   +    F P   TYG L  G+  A +  EA+ +++E+
Sbjct: 861 HNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEM 919



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 116/549 (21%), Positives = 218/549 (39%), Gaps = 58/549 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  S + P +  + T++S+    GD             ++ V++F          PD   
Sbjct: 323 MRASSHKPDLVTYITLMSKFGNYGD-------------LETVKRFWSEMEADGYAPDVVT 369

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++ A    GK  +   + D M   G  P++ TYN +I       R    + +   + 
Sbjct: 370 YTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNME 429

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            +G+     ++   +  Y   GD E A    + M+  +R +   I   +   YS    G 
Sbjct: 430 SLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMK--KRGIMPSIAACNASLYSLAEMGR 487

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F     N I+            +P+S  Y  +MK Y   G++    ++L  M 
Sbjct: 488 IREAKDIF-----NDIHNCG--------LSPDSVTYNMMMKCYSKAGQIDKATKLLTEML 534

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD +   +++  L KAG +D A Q+   +  + +    +TYNIL+ G  ++ 
Sbjct: 535 SE---GCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEG 591

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ KA +L   M +     P+ V++N L+D     D    AL  F  M     +P  ++Y
Sbjct: 592 KLLKALDLFGSMKESG-CPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTY 650

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII-ERM 419
            T++       +   A   + +M +   +  D V    L+ G  + G VE+A +I+ E +
Sbjct: 651 NTIIYGLIKEGRAGYAFWFYHQMKK--FLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFV 708

Query: 420 KENGFYPNVATYGSLANGISLARKPGEAL----------------LLWKEIKERCEVKKE 463
            ++G   +   +G L   I +  +  EA+                L+   I+  C+ +K+
Sbjct: 709 HQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCK-QKK 767

Query: 464 GVNADSDLPPPLK-----PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
            ++A        K     P  E  + L D  +       AL++   M+  G  PN   Y 
Sbjct: 768 ALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTY- 826

Query: 519 KIYVEMHSR 527
            + ++ H +
Sbjct: 827 NLLLDAHGK 835



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 10/263 (3%)

Query: 193 PNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
           P ++    +   +   ++ N  IY  L  G+  E         L   +R       P   
Sbjct: 177 PFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEA--------LKVYKRMISEGLKPSMK 228

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TY+ ++ AL +         +L EM  +G+  N  TY I ++   +  +ID A  +L+ M
Sbjct: 229 TYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTM 288

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            D+    PDVV+Y +LID          A   + +MRA    P  ++Y TLM  F     
Sbjct: 289 EDEG-CGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGD 347

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            +   + + EM  D     D+V + +LVE  C+ G V++A  +++ M+  G  PN+ TY 
Sbjct: 348 LETVKRFWSEMEADGYAP-DVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYN 406

Query: 433 SLANGISLARKPGEALLLWKEIK 455
           +L +G+   R+  EAL L+  ++
Sbjct: 407 TLISGLLNLRRLDEALELFNNME 429



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 178/429 (41%), Gaps = 30/429 (6%)

Query: 52   SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
            S   P+T  +NA+L+           L++F +M      PDVLTYN +I    +  R   
Sbjct: 606  SGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGY 665

Query: 112  LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE-----IAETIVQAMREGRRDV----- 161
              +   ++ +  ++    T  +L+   V  G +E     + E + Q+  +    V     
Sbjct: 666  AFWFYHQMKKF-LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELM 724

Query: 162  -CKIIRELDLEDYSSENEG-------DDDDDDEVFEKLLPNSINPSSEPPLLPK-----T 208
             C +I E ++E+  S  EG        DD+      ++L           L  K      
Sbjct: 725  ECILI-EAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLG 783

Query: 209  FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              P    Y  LM G +        +++   M+   +    P+  TY  ++ A  K+  +D
Sbjct: 784  THPTPESYNCLMDGLLGCNITEAALKLFVEMK---NAGCCPNIFTYNLLLDAHGKSKRID 840

Query: 269  RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
               ++  EM   G   N IT+NI++    +   I+KA +L  E+       P   +Y  L
Sbjct: 841  ELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIIS-GDFSPTPCTYGPL 899

Query: 329  IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
            I G +    S  A+  F EM      P    Y  L+  F  +    +A  +F  M+++  
Sbjct: 900  IGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEG- 958

Query: 389  VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            ++ D+ ++ +LVE     G V++A    E +K  G  P+  +Y  + NG+  +R+  EAL
Sbjct: 959  IRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEAL 1018

Query: 449  LLWKEIKER 457
             L+ E+K R
Sbjct: 1019 SLFSEMKNR 1027



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 173/418 (41%), Gaps = 35/418 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  ++ ++  L A+G              + + ++       S  KPD   Y  +
Sbjct: 292 GCGPDVVTYTVLIDALCAAGK-------------LDKAKELYTKMRASSHKPDLVTYITL 338

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++   N G  +   + + +M   G  PDV+TY ++++   ++ +      +L+ +   GI
Sbjct: 339 MSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGI 398

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              + T+ +L++  +    L+ A  +   M             L ++ Y     GD +  
Sbjct: 399 VPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGK--LGDPEKA 456

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMRRQE 243
            + FEK+    I PS          A N+ +Y+    G + E + + + +   G      
Sbjct: 457 LDTFEKMKKRGIMPSIA--------ACNASLYSLAEMGRIREAKDIFNDIHNCGL----- 503

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                PD VTY  ++    KAG +D+A ++L EM   G   + I  N L+    +  ++D
Sbjct: 504 ----SPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVD 559

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A ++   +  D K+ P VV+YNILI G         AL  F  M+  G  P  +++  L
Sbjct: 560 EAWQMFGRL-KDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNAL 618

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +     +    LA K+F  M        D++ +N ++ G  + G    A     +MK+
Sbjct: 619 LDCLCKNDAVDLALKMFCRM-TIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKK 675



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%)

Query: 249  PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
            P   TY  ++  L+KAG  + A ++  EM       N   YNIL+ G+ +   ++ A +L
Sbjct: 891  PTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDL 950

Query: 309  LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             + M  +  I PD+ SY IL++   +      A+ +F E++  G+ P  +SY  ++    
Sbjct: 951  FKRMIKEG-IRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLG 1009

Query: 369  LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             S + + A  +F EM ++  +  ++  +N L+  +   G+V++A ++ E ++  G  PNV
Sbjct: 1010 KSRRLEEALSLFSEM-KNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNV 1068

Query: 429  ATYGSLANGISLARKPGEALLLWKEI 454
             TY +L  G S +     A  ++K++
Sbjct: 1069 FTYNALIRGHSKSGNKDRAFSVFKKM 1094



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 5/254 (1%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +   P+ + Y+ LM      GR  DT  ++  +   E     P+  TYT  +  L +
Sbjct: 218 MISEGLKPSMKTYSALMVAL---GRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGR 274

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A  +L  M   G   + +TY +L+   C   ++DKAKEL  +M   +  +PD+V
Sbjct: 275 AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSH-KPDLV 333

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  L+  F    D      F++EM A G AP  ++YT L++A   S +   A  + D M
Sbjct: 334 TYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVM 393

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R   +  ++  +N L+ G   +  ++EA  +   M+  G  P   +Y    +       
Sbjct: 394 -RVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGD 452

Query: 444 PGEALLLWKEIKER 457
           P +AL  ++++K+R
Sbjct: 453 PEKALDTFEKMKKR 466



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 137/308 (44%), Gaps = 19/308 (6%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            P+   YN +L+A     +  +  +L+++M   G KP+++T+N++I    +++  +  + +
Sbjct: 821  PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDL 880

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
               I+    +    T+  L+   +  G  E A  I + M + +      I  + +  +  
Sbjct: 881  YYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGK 940

Query: 176  ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               G+ +   ++F++++   I P             + + YT L++     GRV D V  
Sbjct: 941  A--GNVNIACDLFKRMIKEGIRP-------------DLKSYTILVECLFMTGRVDDAVHY 985

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               ++        PD V+Y  +++ L K+  ++ A  + +EM   G+     TYN L+  
Sbjct: 986  FEELKL---TGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILH 1042

Query: 296  YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            +     +D+A ++  E+     +EP+V +YN LI G     +   A + F +M   G +P
Sbjct: 1043 FGNAGMVDQAGKMFEEL-QFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSP 1101

Query: 356  TKISYTTL 363
               ++  L
Sbjct: 1102 NAGTFAQL 1109



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/312 (17%), Positives = 118/312 (37%), Gaps = 66/312 (21%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            ML  G  P++   + ++S L  S               + +        I  D  P    
Sbjct: 849  MLCRGCKPNIITHNIIISALVKSNS-------------INKALDLYYEIISGDFSPTPCT 895

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            Y  ++      G+ ++ +++F++M ++  KP+   YN++I    +A   ++   + +R++
Sbjct: 896  YGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMI 955

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            + GI   + ++  LV      G +                                    
Sbjct: 956  KEGIRPDLKSYTILVECLFMTGRV------------------------------------ 979

Query: 181  DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             DD    FE+L    ++P +               Y  ++ G     R+ + + +   M+
Sbjct: 980  -DDAVHYFEELKLTGLDPDTVS-------------YNLMINGLGKSRRLEEALSLFSEMK 1025

Query: 241  RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             +      P+  TY  ++     AG +D+A ++  E+  +G+  N  TYN L++G+ +  
Sbjct: 1026 NR---GISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSG 1082

Query: 301  QIDKAKELLREM 312
              D+A  + ++M
Sbjct: 1083 NKDRAFSVFKKM 1094



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 76/156 (48%), Gaps = 22/156 (14%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASG--DDGP--VESVKL---------FDVVVK---RVRK 44
            M++ G  P +K+++ +V  L  +G  DD     E +KL         +++++    + R+
Sbjct: 954  MIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRR 1013

Query: 45   FSDP-DIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
              +   + S+ K     P+   YNA++    N G   +  ++F+++   G +P+V TYN 
Sbjct: 1014 LEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNA 1073

Query: 99   MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134
            +I+  +++  K     V ++++ +G +    TF  L
Sbjct: 1074 LIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 152/302 (50%), Gaps = 23/302 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y+T++ G+  EG +  T      M    D    P+ VTY ++++AL KA ++D+A
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEML---DKRISPNVVTYNSIIAALCKAQTVDKA 66

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL  M + GV  + +TYN ++ G+C   Q  +A   L++M  D  +EPDVV+YN L+D
Sbjct: 67  MEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG-VEPDVVTYNSLMD 125

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A   F+ M  RG+ P   +Y TL++ +A        + + D M+R+  + 
Sbjct: 126 YLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG-IH 184

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +   +++LV  Y +   VEEA  +  +M++ G  PN  TYG++ + +  + +  +A+L 
Sbjct: 185 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 244

Query: 451 WKEIKERCEVKKEGVNADSDLPPPL----------KPDEELLDALAD--ICVRAAFFRKA 498
           ++++ +      EG+  DS +   L          +  EEL   + D  IC+   FF   
Sbjct: 245 FEQMID------EGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 298

Query: 499 LE 500
           ++
Sbjct: 299 ID 300



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 156/344 (45%), Gaps = 20/344 (5%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
            D  PD  +Y+ V+N     G   K    +++M +    P+V+TYN +I    +A     
Sbjct: 6   GDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDK 65

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + VL  +++ G+     T+ S+V  +   G  + A   ++ MR    +   ++    L 
Sbjct: 66  AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEP-DVVTYNSLM 124

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           DY  +N G   +  ++F+ +    +              P+   Y TL++GY  +G + +
Sbjct: 125 DYLCKN-GRCTEARKIFDSMTKRGLK-------------PDITTYGTLLQGYATKGALVE 170

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +L  M R   N  HP+H  ++ +V A  K   ++ A  V ++M + G+  N +TY  
Sbjct: 171 MHGLLDLMVR---NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 227

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++   C+  +++ A     +M D+  + PD + YN LI    + D    A   F EM  R
Sbjct: 228 VIDVLCKSGRVEDAMLYFEQMIDEG-LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR 286

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           GI  + I + +++ +     +   + K+FD M+R   VK DI+ 
Sbjct: 287 GICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVR-IGVKPDIIT 329



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 2/147 (1%)

Query: 312 MADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           MADD     PDVVSY+ +I+GF    D     + +NEM  + I+P  ++Y +++ A   +
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKA 60

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
                A +V   M++   V  D + +N +V G+C  G  +EA   +++M+ +G  P+V T
Sbjct: 61  QTVDKAMEVLTTMVKSG-VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVT 119

Query: 431 YGSLANGISLARKPGEALLLWKEIKER 457
           Y SL + +    +  EA  ++  + +R
Sbjct: 120 YNSLMDYLCKNGRCTEARKIFDSMTKR 146



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 136/325 (41%), Gaps = 69/325 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-KPDTA 59
           M++SG +P    ++++V    +SG   P E++    V +K++R        SD  +PD  
Sbjct: 73  MVKSGVMPDCMTYNSIVHGFCSSGQ--PKEAI----VFLKKMR--------SDGVEPDVV 118

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++     G+  +  ++FD M + G KPD+ TY  +++  A       +  +L+ +
Sbjct: 119 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLM 178

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +  GI      F  LV AY         E + +AM                         
Sbjct: 179 VRNGIHPNHYVFSILVCAYAK------QEKVEEAML------------------------ 208

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                  VF K+    +N             PN+  Y T++      GRV D +     M
Sbjct: 209 -------VFSKMRQQGLN-------------PNAVTYGTVIDVLCKSGRVEDAMLYFEQM 248

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               D    PD + Y +++ +L      ++A ++  EM   G+  + I +N ++  +C++
Sbjct: 249 I---DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKE 305

Query: 300 LQIDKAKELLREMADDAKIEPDVVS 324
            ++ ++ +L   M     ++PD+++
Sbjct: 306 GRVIESVKLFDLMV-RIGVKPDIIT 329



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 26/183 (14%)

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  +SY+T++  F            ++EML D R+  ++V +N ++   C+   V++A  
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEML-DKRISPNVVTYNSIIAALCKAQTVDKAME 68

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M ++G  P+  TY S+ +G   + +P EA++  K+++       +GV         
Sbjct: 69  VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS------DGV--------- 113

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------KKIYVEMH 525
            +PD    ++L D   +     +A +I   M + G+ P+ T Y         K   VEMH
Sbjct: 114 -EPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMH 172

Query: 526 SRM 528
             +
Sbjct: 173 GLL 175


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 185/421 (43%), Gaps = 25/421 (5%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +P+   YN++++      +P +  +LF+ M      P ++TYN ++    R  +    +
Sbjct: 6   CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAM 65

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR-----------DVC 162
            + + +L+   +  + +F  LV      G +E A    + M +               +C
Sbjct: 66  ALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLC 124

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSR 214
           K  R     +     +      D +   +L + +   S+          +L     PN  
Sbjct: 125 KANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLV 184

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y +L+ G     RVSD    L  MR        P+ VTY T++  L K G +  A  +L
Sbjct: 185 TYNSLLHGLCRARRVSDA---LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 241

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
           A+M   G   + + YN+L+ G C+  Q+D++  LLR  A    I+PDVV+Y+ +I G   
Sbjct: 242 ADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR-AVSGGIKPDVVTYSSVIYGLCR 300

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            +    A      +++RG  P  I Y+TL+     + +   A  +++ M  D     D+V
Sbjct: 301 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDG-CDADVV 359

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            ++ L++G C+ G V+EA  ++ RM   G  P+  TY SL  G+       EA+ L +E+
Sbjct: 360 TYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEM 419

Query: 455 K 455
           +
Sbjct: 420 E 420



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 187/437 (42%), Gaps = 38/437 (8%)

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M + G +P+V+TYN +I    + +       + E +  +  +  M T+ +L+      G 
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203
           LE A  + Q M + R      +   ++        G  +   E F K+            
Sbjct: 61  LERAMALFQEMLDRRS---HDVISFNILVTGLCRAGKIETALEFFRKM------------ 105

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
                 +PN   Y+ L+ G     RVS  V +L +M+ +      PD +TYT +V  L K
Sbjct: 106 --DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKAR---GCSPDVITYTILVDGLCK 160

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +  A +VL EM   G   N +TYN LL G C+  ++  A  L+R+M       P+VV
Sbjct: 161 ESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG-CTPNVV 219

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LIDG   +     A     +M  +G  P  + Y  L+     + Q   +  +    
Sbjct: 220 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 279

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +    +K D+V ++ ++ G CR   ++EA R++  +K  G  P+V  Y +L +G+  A K
Sbjct: 280 VSGG-IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGK 338

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  L++ +        +G +AD      +     L+D L     +A    +A  ++A
Sbjct: 339 VDEAFDLYEVM------TGDGCDAD------VVTYSTLIDGLC----KAGRVDEAHLLLA 382

Query: 504 CMEEHGIPPNKTKYKKI 520
            M   G PP+   Y  +
Sbjct: 383 RMVRMGTPPSTMTYNSL 399



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 160/335 (47%), Gaps = 27/335 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN++L+      +    L L   M   G  P+V+TY  +I    +  R      +
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +++ G T  +  +  L+        L  A+ + +++   RR V   I+  D+  YSS
Sbjct: 241 LADMIDKGGTPDLMIYNMLING------LCKADQVDESIALLRRAVSGGIKP-DVVTYSS 293

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--PNSRIYTTLMKGYMNEGRVSDTV 233
                      ++     N ++ +    L  K+    P+  +Y+TL+ G    G+V +  
Sbjct: 294 V----------IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 343

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M     +    D VTY+T++  L KAG +D A  +LA M R+G P + +TYN L+
Sbjct: 344 DLYEVM---TGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLI 400

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRAR 351
           KG C    +D+A EL+ EM + +   P  V+YNILI G   ++  DSA AL +F EM   
Sbjct: 401 KGLCDLNHLDEAIELVEEM-ERSNCAPSAVTYNILIHGMCRMERVDSA-ALDYFQEMIDN 458

Query: 352 GIAPTKISYTTLMKAFALSSQ-PKLANKVFDEMLR 385
           G+ P  I+Y+ L++    S    +L + V D+M++
Sbjct: 459 GVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQ 493



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 170/386 (44%), Gaps = 21/386 (5%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
             P+   Y+ +++      +  + ++L + M   G  PDV+TY +++    + S+     
Sbjct: 109 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 168

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  +L+ G    + T+ SL+        L  A  +  A+   R   C+     ++  Y
Sbjct: 169 EVLREMLDAGCVPNLVTYNSLLHG------LCRARRVSDALALMRDMTCRGCTP-NVVTY 221

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            +  +G          K+       +    ++ K   P+  IY  L+ G     +V +++
Sbjct: 222 GTLIDG--------LCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESI 273

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L   RR       PD VTY++V+  L ++  +D A ++L  +   G P + I Y+ L+
Sbjct: 274 ALL---RRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLI 330

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  ++D+A +L   M  D   + DVV+Y+ LIDG         A      M   G 
Sbjct: 331 DGLCKAGKVDEAFDLYEVMTGDG-CDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGT 389

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P+ ++Y +L+K     +    A ++ +EM R        V +N+L+ G CRM  V+ A 
Sbjct: 390 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMER-SNCAPSAVTYNILIHGMCRMERVDSAA 448

Query: 414 -RIIERMKENGFYPNVATYGSLANGI 438
               + M +NG  P+  TY  L  G+
Sbjct: 449 LDYFQEMIDNGVIPDHITYSILLEGL 474



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 176/403 (43%), Gaps = 30/403 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  ++N ++      GK +  L+ F +M +    P+V+TY+V+I    +A+R    V +L
Sbjct: 78  DVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELL 136

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E +   G +  + T+  LV       D    E+ V A  E  R++       +L  Y+S 
Sbjct: 137 ESMKARGCSPDVITYTILV-------DGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 189

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLL----PKTFAPNSRIYTTLMKGYMNEGRVSDT 232
             G            L  +   S    L+     +   PN   Y TL+ G    GRV D 
Sbjct: 190 LHG------------LCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 237

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             ML  M    D    PD + Y  +++ L KA  +D +  +L      G+  + +TY+ +
Sbjct: 238 CAMLADMI---DKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSV 294

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C+  ++D+A  LL  +       PDV+ Y+ LIDG         A   +  M   G
Sbjct: 295 IYGLCRSNRLDEACRLLLYVKSRG-CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDG 353

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
                ++Y+TL+     + +   A+ +   M+R        + +N L++G C +  ++EA
Sbjct: 354 CDADVVTYSTLIDGLCKAGRVDEAHLLLARMVR-MGTPPSTMTYNSLIKGLCDLNHLDEA 412

Query: 413 KRIIERMKENGFYPNVATYGSLANGIS-LARKPGEALLLWKEI 454
             ++E M+ +   P+  TY  L +G+  + R    AL  ++E+
Sbjct: 413 IELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEM 455


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 169/385 (43%), Gaps = 55/385 (14%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   Y  +++  +N+GK ++  +LF++M E G + DV  Y  +I    R+      + + 
Sbjct: 294 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLF 353

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + + + G+     T+ +L+      G +E A+ +V  M                     +
Sbjct: 354 DEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEM---------------------Q 392

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +G D              +NP                I+ TL+ GY   G V + +R+ 
Sbjct: 393 GKGID--------------LNPV---------------IFNTLIDGYCESGMVDEALRLQ 423

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M   E      D   Y ++ S L K    D A+ +L  M   GV  N +++  L+  Y
Sbjct: 424 VVM---EKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIY 480

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C++    +AK + REM +   + P++++YN+LIDG+    +   A    +E+  RG+ P 
Sbjct: 481 CKEGNFVEAKRVFREMEEKGNV-PNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 539

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             + T+L+    +  +  +A K+FDEM +   V  ++V +  ++ G  + G  EEA ++ 
Sbjct: 540 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVP-NVVTYTAMISGLSKDGRSEEAFKLY 598

Query: 417 ERMKENGFYPNVATYGSLANGISLA 441
           + MKE G  P+   Y SL   +  A
Sbjct: 599 DEMKETGLTPDDTVYSSLVGSLHSA 623



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 206/463 (44%), Gaps = 52/463 (11%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARA----SRKHLLVFVLERILEMGITL 126
           G+    L+ F +M     +  V +  +++  LC R      RK     +++ +   G+  
Sbjct: 204 GQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRK-----LMDEVAAKGVKA 258

Query: 127 CMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
            + T+ + +  Y    DL  +AE +    +EG    C ++    L  +   N G  ++  
Sbjct: 259 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGV--ACNVV-TYTLLIHGFSNIGKIEEAQ 315

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            +FE++    I               +  +YT+++      G V   + +   M    D 
Sbjct: 316 RLFEEMREKGIEA-------------DVYVYTSIISCNCRSGNVKRALVLFDEM---TDK 359

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P   TY  ++  + KAG M+ A+ ++ EM   G+  N + +N L+ GYC+   +D+A
Sbjct: 360 GLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEA 419

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRARGIAPTKISYTTL 363
              L+ + +   +E DV +YN +  G   ++  D A  L F   M  RG++P  +S+TTL
Sbjct: 420 LR-LQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLF--SMVERGVSPNTMSFTTL 476

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +  +        A +VF EM     V  +I+ +N+L++GY + G ++EA ++ + ++  G
Sbjct: 477 IDIYCKEGNFVEAKRVFREMEEKGNVP-NIITYNVLIDGYSKRGNMKEAHKLKDELENRG 535

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             P+V T  SL +G  +  K   AL L+ E+ +R             L P +     ++ 
Sbjct: 536 LIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQR------------GLVPNVVTYTAMIS 583

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
            L+    +     +A ++   M+E G+ P+ T Y  +   +HS
Sbjct: 584 GLS----KDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHS 622


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 185/406 (45%), Gaps = 31/406 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PD    N ++N   ++G+      +  ++ + G  PD +T N +IK LC +   K  L 
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVC---KIIREL 168
           F  +++L  G  L   ++ +L+      GD   A   ++ +  R  + DV     II  +
Sbjct: 151 F-HDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAM 209

Query: 169 DLEDYSSENEGDDDD--------DDEVFEKL---------LPNSINPSSEPPLLPKTFAP 211
                 SE  G   +        D   +  L         L  +I   +E  L  KT  P
Sbjct: 210 CKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVL--KTINP 267

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N   Y  L+     EG+V +   +L  M +       PD +TY+T++        + +A+
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKA---CVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            V   M+ +GV  +  TY IL+ G+C+   +D+A  L +EM     + P +V+Y+ LIDG
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMV-PGIVTYSSLIDG 383

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                  +      +EMR RG     I+Y++L+     +     A  +F++M +D  ++ 
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKM-KDQEIRP 442

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +I  + +L++G C+ G +++A+ + + +   G++ NV TY  + NG
Sbjct: 443 NIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMING 488



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 194/450 (43%), Gaps = 49/450 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P     +T++  L   G              VK+   F D  +    + +  +
Sbjct: 120 ILKRGYPPDTVTLNTLIKGLCLKGQ-------------VKKALHFHDKLLAQGFQLNQVS 166

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G  +  ++   ++     KPDV+ YN +I    +         +   + 
Sbjct: 167 YATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMA 226

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
             GI+  + T+ +L+  +   G L+ A  ++  M         +++ ++   Y+      
Sbjct: 227 VKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEM---------VLKTINPNVYTYNILVD 277

Query: 177 ---NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               EG   +   V   +L   +              P+   Y+TLM GY     V    
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVK-------------PDVITYSTLMDGYFLVYEVKKAQ 324

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +  AM         PD  TYT +++   K   +D A  +  EM +  +    +TY+ L+
Sbjct: 325 HVFNAMSLM---GVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C+  +I    +L+ EM D  +   DV++Y+ LIDG         A+  FN+M+ + I
Sbjct: 382 DGLCKSGRISYVWDLIDEMRDRGQ-PADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P   ++T L+       + K A +VF ++L      +++  +N+++ G+C+ GL+EEA 
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY-HLNVYTYNVMINGHCKQGLLEEAL 499

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARK 443
            ++ +M++NG  PN  T+ ++   I+L +K
Sbjct: 500 TMLSKMEDNGCIPNAFTFETII--IALFKK 527



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/458 (23%), Positives = 184/458 (40%), Gaps = 71/458 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +N +L++ A +      + L  ++   G +PD++T N++I       +      V
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL+ G      T  +L+      G ++                    + L   D   
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVK--------------------KALHFHD--- 153

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                       LL + F  N   Y TL+ G     ++ DT   
Sbjct: 154 ---------------------------KLLAQGFQLNQVSYATLINGVC---KIGDTRAA 183

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  +R+ +   + PD V Y T++ A+ K   +  A  + +EM   G+ A+ +TYN L+ G
Sbjct: 184 IKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYG 243

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C   ++ +A  LL EM     I P+V +YNIL+D          A +    M    + P
Sbjct: 244 FCIVGKLKEAIGLLNEMVLKT-INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y+TLM  + L  + K A  VF+ M     V  D+  + +L+ G+C+  +V+EA  +
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            + M +    P + TY SL +G+    K G    +W  I E           D   P  +
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLC---KSGRISYVWDLIDEM---------RDRGQPADV 409

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                L+D L     +     +A+ +   M++  I PN
Sbjct: 410 ITYSSLIDGLC----KNGHLDRAIALFNKMKDQEIRPN 443



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 116/278 (41%), Gaps = 18/278 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R E     PD +T   +++     G +     VLA++ + G P + +T N L+KG C +
Sbjct: 83  HRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLK 142

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+ KA     ++      + + VSY  LI+G   I D+  A+ F  ++  R   P  + 
Sbjct: 143 GQVKKALHFHDKLLAQG-FQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVM 201

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y T++ A         A  +F EM     +  D+V +N L+ G+C +G ++EA  ++  M
Sbjct: 202 YNTIIDAMCKYQLVSEAYGLFSEMAVKG-ISADVVTYNTLIYGFCIVGKLKEAIGLLNEM 260

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
                 PNV TY  L + +    K  EA  +   + + C                +KPD 
Sbjct: 261 VLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC----------------VKPDV 304

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                L D        +KA  +   M   G+ P+   Y
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTY 342



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 27/293 (9%)

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           VS   RML  MR        P  + +  ++ +  K      A  +   +   G+  + IT
Sbjct: 44  VSQFNRML-CMRHT------PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLIT 96

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
            NIL+  +C   QI     +L ++       PD V+ N LI G  L      AL F +++
Sbjct: 97  LNILINCFCHMGQITFGFSVLAKILKRG-YPPDTVTLNTLIKGLCLKGQVKKALHFHDKL 155

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV-KVDIVAWNMLVEGYCRMG 407
            A+G    ++SY TL+         + A K   ++  D R+ K D+V +N +++  C+  
Sbjct: 156 LAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKI--DGRLTKPDVVMYNTIIDAMCKYQ 213

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
           LV EA  +   M   G   +V TY +L  G  +  K  EA+ L  E+  +          
Sbjct: 214 LVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLK---------- 263

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  + P+    + L D   +    ++A  ++A M +  + P+   Y  +
Sbjct: 264 ------TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  ++N         + L LF +MH+    P ++TY+ +I    ++ R   +  +
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDL 396

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR--EGRRDVCKIIRELDLEDY 173
           ++ + + G    + T+ SL+      G L+ A  +   M+  E R ++      LD    
Sbjct: 397 IDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLD---- 452

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                G   D  EVF+              LL K +  N   Y  ++ G+  +G + + +
Sbjct: 453 GLCKGGRLKDAQEVFQD-------------LLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
            ML  M   EDN   P+  T+ T++ AL K    D+A ++L +M   G+
Sbjct: 500 TMLSKM---EDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 21/394 (5%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           +K  R   D  ++   KPD  +Y A+L+  A  G       LF+ M   G  PD   +N 
Sbjct: 274 IKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNT 333

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREG 157
           +I   AR       + + E + + G+   + TF ++++A+   G L+ A E     +  G
Sbjct: 334 LINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTG 393

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
                      D   YS   +G  +  D V  K L + +     PP       P  + +T
Sbjct: 394 VPP--------DTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP-------PCIKFFT 438

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           +++     EGRV++   ++  +         P+ +T+ ++V      G+M  A  +L  M
Sbjct: 439 SIINNLCKEGRVAEGKDVVDLIIH---TGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSM 495

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
             +GV  +  TYN L+ GYC+  +ID A  L R+M    ++    VSYNI++ G      
Sbjct: 496 ESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHK-RVTLTSVSYNIILHGLFQARR 554

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
           +  A   F+EM   G+A +  +Y T++     ++    AN + +++     VK DI+ +N
Sbjct: 555 TIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLF-SMNVKFDILTFN 613

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +++    ++G  +EAK +   +   G  P + TY
Sbjct: 614 IVIRAMFKVGRRQEAKELFAAISTYGLVPTILTY 647



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 117/554 (21%), Positives = 226/554 (40%), Gaps = 91/554 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YNA+++  +  G+  K   LF +M E G  P+V+TY+ +I    +         V
Sbjct: 151 PDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERV 210

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELD-LED 172
           L +++  G+     T+  L+  Y   G  + +  + + M       DV      +  L  
Sbjct: 211 LRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCK 270

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSE-----------------PPLLPKTFAPNSRI 215
           +    E  D  D  V +   P+ I+  +                    ++ +   P+  +
Sbjct: 271 HGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV 330

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           + TL+  Y   G +  ++ M   M +Q  N   PD +T++TV+SA  + G +D A +   
Sbjct: 331 FNTLINAYARLGMMDKSLLMFEDMTKQGVN---PDIITFSTVISAFCRLGRLDDAMEKFN 387

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM--------------------ADD 315
            M   GVP +   Y+ L++G C +  + KAKEL+ +M                      +
Sbjct: 388 HMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKE 447

Query: 316 AKI---------------EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++                P+++++N L+DG+ L+ +   A+   + M + G+ P   +Y
Sbjct: 448 GRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTY 507

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            TL+  +    +   A  +F +ML   RV +  V++N+++ G  +      AK +   M 
Sbjct: 508 NTLVDGYCKHGRIDDALTLFRDMLHK-RVTLTSVSYNIILHGLFQARRTIVAKEMFHEMI 566

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           E+G   ++ TY ++  G+       EA +L +++          +N   D+         
Sbjct: 567 ESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFS--------MNVKFDI--------- 609

Query: 481 LLDALADICVRAAF----FRKALEIVACMEEHGIPPNKTKYKKIYVEM--------HSRM 528
                 +I +RA F     ++A E+ A +  +G+ P    Y+ +   +           +
Sbjct: 610 ---LTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNL 666

Query: 529 FTSKHASQARQDRR 542
           F+S   S    D R
Sbjct: 667 FSSMEKSSCTPDSR 680



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 155/372 (41%), Gaps = 60/372 (16%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL     P+   Y  L+ G+  EG V     +   M   E+    P+ VTY+++++ L K
Sbjct: 144 LLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM---EEQGIMPNVVTYSSLINGLCK 200

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGY--------------------------- 296
              MD+A +VL +M   GV  N +TYN L+ GY                           
Sbjct: 201 TKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGN 260

Query: 297 --------CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
                   C+  +I +A+++   M      +PDV+SY  L+ G+      AG    FN M
Sbjct: 261 CNSFMTALCKHGRIKEARDIFDSMVLKGP-KPDVISYGALLHGYATAGCIAGMDNLFNVM 319

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
              G+ P +  + TL+ A+A       +  +F++M +   V  DI+ ++ ++  +CR+G 
Sbjct: 320 VCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG-VNPDIITFSTVISAFCRLGR 378

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLAR---KPGEAL--LLWKEIKERC----- 458
           +++A      M + G  P+ A Y  L  G    R   K  E +  +L K I   C     
Sbjct: 379 LDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 438

Query: 459 ----EVKKEGVNADSD------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
                + KEG  A+        +    +P+    ++L D        ++A+ ++  ME  
Sbjct: 439 SIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV 498

Query: 509 GIPPNKTKYKKI 520
           G+ P+   Y  +
Sbjct: 499 GVEPDIYTYNTL 510



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 18/288 (6%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V +   M R     + P   TY  +++   +A   D    V   + R G+  +  +YN L
Sbjct: 100 VELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNAL 159

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+ ++ ++DKA +L  +M ++  I P+VV+Y+ LI+G     +   A     +M   G
Sbjct: 160 IDGFSKEGEVDKAHDLFYKM-EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++Y  L+  ++ S   K + +VF EM     V  D+   N  +   C+ G ++EA
Sbjct: 219 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVP-DVGNCNSFMTALCKHGRIKEA 277

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           + I + M   G  P+V +YG+L +G + A        L+  +   C    EGV       
Sbjct: 278 RDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMV--C----EGV------- 324

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               PD  + + L +   R     K+L +   M + G+ P+   +  +
Sbjct: 325 ---VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 369


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 183/427 (42%), Gaps = 33/427 (7%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           D V    P+  +Y+ V+N     G+  K   LF +M + G  PDV+TY  +I    +A  
Sbjct: 194 DQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQL 253

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIR 166
                 V +++++ G+   + T+  L+  Y+  G  +    +++ M  G  + + C    
Sbjct: 254 FDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYG- 312

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP----------------------PL 204
              L +Y  +N G   +    F+ ++   I PS                          +
Sbjct: 313 --SLLNYLCKN-GRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLM 369

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           +    +PN  I+      Y   G +   + +   MR+Q      PD V+Y  ++ AL K 
Sbjct: 370 VANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQ---GLSPDAVSYGALIDALCKL 426

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +D A     +M   GV  + + ++ L+ G C   + +K +EL  EM  +  I P++V 
Sbjct: 427 GRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEML-NVGIHPNIVF 485

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +N ++                + +   G+ P  ISY TL+    L+     A+K+ + M+
Sbjct: 486 FNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMV 545

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               +K D  ++N L+ GYC+ G ++ A     +M  NG  P V TY ++ +G+   ++ 
Sbjct: 546 -SVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRF 604

Query: 445 GEALLLW 451
            EA  L+
Sbjct: 605 SEAKELY 611



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/476 (20%), Positives = 205/476 (43%), Gaps = 42/476 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++TV+  L  +         +LFD      ++  D  +    KP+   
Sbjct: 229 MMDRGIPPDVVTYTTVIDGLCKA---------QLFDRAEAVFQQMIDNGV----KPNIDT 275

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++   ++GK K+ +++ ++M   G KP+  TY  ++    +  R     F  + ++
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMI 335

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   +TT+  ++  Y   G L     ++  M          I  +    Y+    G 
Sbjct: 336 GKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKC--GI 393

Query: 181 DDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTT 218
            D   ++F K+    ++P +                         ++ +   P+  ++++
Sbjct: 394 IDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSS 453

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G     +      +   M    +   HP+ V + T++  L K G +   ++++  + 
Sbjct: 454 LVYGLCTVDKWEKVEELFFEML---NVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIE 510

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
            +GV  + I+YN L+ G+C    ID+A +LL  M     ++PD  SYN L+ G+      
Sbjct: 511 CMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS-VGLKPDSFSYNTLLHGYCKAGRI 569

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A + F +M + GI P  ++Y T++     + +   A +++  M+ +   K DI  +N+
Sbjct: 570 DSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMI-NSGTKWDIYTYNI 628

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++ G C+   V+EA ++ + +   G   N+ T+  +   +    +  +A+ L+  I
Sbjct: 629 ILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 684



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++  Y  L+KG  NE R  + + +L  M   +  +  P+ V+Y+TV++     G +D+ 
Sbjct: 163 PDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKP 222

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +  EM   G+P + +TY  ++ G C+    D+A+ + ++M D+  ++P++ +YN LI 
Sbjct: 223 YNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNG-VKPNIDTYNCLIH 281

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G++ I      +    EM A G  P   +Y +L+     + + + A   FD M+    +K
Sbjct: 282 GYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMI-GKGIK 340

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             +  + +++ GY   G + E   ++  M  NG  PN
Sbjct: 341 PSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPN 377



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 118/530 (22%), Positives = 212/530 (40%), Gaps = 102/530 (19%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC---MTTFQSLVA 136
           L  +M E G  PD ++YN+++K      R    + +L  + +  +  C   + ++ +++ 
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD-----DDDDEVFEKL 191
            +   G ++    +   M +  R +       D+  Y++  +G       D  + VF+++
Sbjct: 212 GFFTEGQVDKPYNLFLEMMD--RGI-----PPDVVTYTTVIDGLCKAQLFDRAEAVFQQM 264

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
           + N +              PN   Y  L+ GY++ G+  + VRML  M         P+ 
Sbjct: 265 IDNGVK-------------PNIDTYNCLIHGYLSIGKWKEVVRMLEEM---SAGGPKPNC 308

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
            TY ++++ L K G    AR     M   G+  +  TY I+L GY  +  + +  +LL  
Sbjct: 309 CTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNL 368

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M  +  I P+   +NI    +        A+  FN+MR +G++P  +SY  L+ A     
Sbjct: 369 MVANG-ISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLG 427

Query: 372 QPKLANKVFDEMLRD---PRVKV-------------------------------DIVAWN 397
           +   A   F++M+ +   P + V                               +IV +N
Sbjct: 428 RVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFN 487

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            ++   C+ G V E +R+++ ++  G  P+V +Y +L +G  LA    EA  L       
Sbjct: 488 TILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLL------ 541

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                EG+     +   LKPD    + L     +A     A      M  +GI P    Y
Sbjct: 542 -----EGM-----VSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTY 591

Query: 518 KKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEW 567
             I   +H    T               KR +EA + +L + NS  G++W
Sbjct: 592 NTI---LHGLFQT---------------KRFSEAKELYLNMINS--GTKW 621



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 120/273 (43%), Gaps = 22/273 (8%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+  TY+ ++    + G ++        + + G   + I  N LL G C   ++ +A ++
Sbjct: 92  PNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDV 151

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---RARGIAPTKISYTTLMK 365
           L +   +    PD VSYNIL+ G      +  AL   + M   +     P  +SY+T++ 
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            F    Q      +F EM+ D  +  D+V +  +++G C+  L + A+ + ++M +NG  
Sbjct: 212 GFFTEGQVDKPYNLFLEMM-DRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVK 270

Query: 426 PNVATYGSLANG-ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
           PN+ TY  L +G +S+ +        WKE+    E    G        P  KP+     +
Sbjct: 271 PNIDTYNCLIHGYLSIGK--------WKEVVRMLEEMSAG-------GP--KPNCCTYGS 313

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           L +   +    R+A      M   GI P+ T Y
Sbjct: 314 LLNYLCKNGRCREARFFFDSMIGKGIKPSVTTY 346



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/485 (19%), Positives = 195/485 (40%), Gaps = 67/485 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P++  ++T++  L   G              V   ++  D       +PD  +
Sbjct: 474 MLNVGIHPNIVFFNTILCNLCKEGR-------------VMEGQRLVDSIECMGVRPDVIS 520

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     G   +  +L + M   G KPD  +YN ++    +A R         ++L
Sbjct: 521 YNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKML 580

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GIT  + T+                 TI+  + + +R      +EL L   +S  + D
Sbjct: 581 SNGITPGVVTYN----------------TILHGLFQTKR--FSEAKELYLNMINSGTKWD 622

Query: 181 DDDDDEVFEKLL-PNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
               + +   L   N ++ + +    L  K    N   +  ++   +  GR  D + +  
Sbjct: 623 IYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 682

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           A+     N    + VTY  VV  L++ GS++    + + M + G   N    N L++   
Sbjct: 683 AI---PANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLL 739

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF-----------------ILIDDSAG 340
            +  I +A   L ++ D+     +  + ++LI  F                 IL + ++ 
Sbjct: 740 HRGDISRAGAYLSKL-DERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSS 798

Query: 341 AL-----------TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           AL           + F EM  +G+ P  ++Y T++     + +   A +++  M+ + R 
Sbjct: 799 ALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI-NSRT 857

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           +++I  +N+++ G C+   V+EA ++ + +   G   N+ T+  +   +    +  +A+ 
Sbjct: 858 QMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMD 917

Query: 450 LWKEI 454
           L+  I
Sbjct: 918 LFAAI 922



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/460 (20%), Positives = 187/460 (40%), Gaps = 57/460 (12%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD------IVSDS 54
            ML +G  P V  ++T++  L                    + ++FS+        I S +
Sbjct: 579  MLSNGITPGVVTYNTILHGLF-------------------QTKRFSEAKELYLNMINSGT 619

Query: 55   KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            K D   YN +LN         + +++F  +   G + +++T+N+MI    +  RK   + 
Sbjct: 620  KWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMD 679

Query: 115  VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG-----RRDVCKIIRELD 169
            +   I   G+   + T++ +V   +  G LE  +++  AM +       + +  ++R L 
Sbjct: 680  LFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL- 738

Query: 170  LEDYSSENEGDDDDDDEVFEKLLPNSIN-PSSEPPLLPKTFAPNSRIY--TTLMKGY--M 224
                   + GD         KL   + +  +S   +L   F+ +   +   +L K Y  +
Sbjct: 739  ------LHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRIL 792

Query: 225  NEGRVSDTVRMLGAMRRQEDNAS----------HPDHVTYTTVVSALVKAGSMDRARQVL 274
            NE   S  ++     RR +D  S           PD VTY T++  L + G    A+++ 
Sbjct: 793  NEANSSALIK---KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELY 849

Query: 275  AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
              M       N  TYNI+L G C+   +D+A ++ + +     ++ +++++NI+I   + 
Sbjct: 850  LSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG-LQLNIITFNIMIGALLK 908

Query: 335  IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                  A+  F  + A G+ P  ++Y  + +        +  + +F  M +     +D  
Sbjct: 909  GGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSG-TPLDSR 967

Query: 395  AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
              N LV    + G +  A   + ++ E  F    +T   L
Sbjct: 968  LLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSEL 1007



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 110/276 (39%), Gaps = 30/276 (10%)

Query: 257 VVSALVKAGSMDR--ARQVLAEMTRIGVPANRITYNILLKGYCQQL-------QIDKAKE 307
           V++   ++GS+    A ++  E+     PA+ + +N LL    +         + +    
Sbjct: 18  VIADRARSGSLGLGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVS 77

Query: 308 LLREMADDA--KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           L   M  D   K+ P+  +Y+ILI  F  +         F  +   G     I    L+ 
Sbjct: 78  LFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLN 137

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                 +   A  V  + + +     D V++N+L++G C     EEA  ++  M ++  +
Sbjct: 138 GLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVW 197

Query: 426 ---PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
              PNV +Y ++ NG     +  +   L+ E+ +R             +PP +     ++
Sbjct: 198 SCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDR------------GIPPDVVTYTTVI 245

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           D L     +A  F +A  +   M ++G+ PN   Y 
Sbjct: 246 DGLC----KAQLFDRAEAVFQQMIDNGVKPNIDTYN 277


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 198/438 (45%), Gaps = 45/438 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P+V+A++ ++S L  SG  G  ++  LFD + +           +   P    
Sbjct: 164 MKRDGCSPNVRAFTFLISGLCKSGRVG--DARLLFDAMPQ-----------NGVVPSVMT 210

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           YNA++   + LG+    L++ + M + G  PD  TYN +I  LC + + +     +L   
Sbjct: 211 YNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA--EELLNNA 268

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV---CKIIRELDLEDYSSE 176
           ++ G T  + TF +L+  Y       +AE    A+R   + +   CK    LDL+ +   
Sbjct: 269 VKEGFTPTVVTFTNLINGYC------MAEKFDDALRMKNKMMSSKCK----LDLQVFGKL 318

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                  D     K L N I+ +           PN   YT+++ GY   G+V   + +L
Sbjct: 319 INSLIKKDRLKEAKELLNEISANG--------LVPNVITYTSIIDGYCKSGKVDIALEVL 370

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M R   +   P+  TY +++  LVK   + +A  +L +M + G+  N ITY  LL+G 
Sbjct: 371 KMMER---DGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQ 427

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C +   D A  L  EM +   ++PD  +Y +L D       +  A +F   +  +G+A T
Sbjct: 428 CDEHDFDNAFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF---IVRKGVALT 483

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           K+ YTTL+  F+ +     A  + + M+ D     D   +++L+   C+   + EA  I+
Sbjct: 484 KVYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEALPIL 542

Query: 417 ERMKENGFYPNVATYGSL 434
           ++M   G    +  Y  L
Sbjct: 543 DQMSLRGIKCTIFAYTIL 560



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 200/496 (40%), Gaps = 49/496 (9%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDSK-PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           + S+  FD+     R +S   +V D   PDT  YN ++ +    G      + F  + E 
Sbjct: 40  LRSLARFDMTEYMGRVYSQ--LVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEG 97

Query: 88  GAKPDVLTYNVMIKLCARAS--RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           G +P+  T N ++    R    RK   +F++     M +  C     S      G  D +
Sbjct: 98  GLEPETFTCNALVLGYCRTGELRKACWLFLM-----MPLMGCQRNEYSYTILIQGLCDAK 152

Query: 146 IAETIVQAMREGRRDVCK-IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
                +      +RD C   +R            G   D   +F+ +  N + PS     
Sbjct: 153 CVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPS----- 207

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                      Y  ++ GY   GR++D +++   M   E N  HPD  TY T++  L   
Sbjct: 208 --------VMTYNAMIVGYSKLGRMNDALKIKELM---EKNGCHPDDWTYNTLIYGLCDQ 256

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
            + + A ++L    + G     +T+  L+ GYC   + D A  +  +M   +K + D+  
Sbjct: 257 KT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM-SSKCKLDLQV 314

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +  LI+  I  D    A    NE+ A G+ P  I+YT+++  +  S +  +A +V   M 
Sbjct: 315 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 374

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           RD   + +   +N L+ G  +   + +A  ++ +M+++G  PNV TY +L  G       
Sbjct: 375 RDG-CQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDF 433

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
             A  L++ +++                  LKPDE     L D   +A    +A E  + 
Sbjct: 434 DNAFRLFEMMEQN----------------GLKPDEHAYAVLTDALCKAG---RAEEAYSF 474

Query: 505 MEEHGIPPNKTKYKKI 520
           +   G+   K  Y  +
Sbjct: 475 IVRKGVALTKVYYTTL 490



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 117/541 (21%), Positives = 206/541 (38%), Gaps = 116/541 (21%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSK-----PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           KL + ++K+ R     +++++       P+   Y ++++     GK    L++   M   
Sbjct: 317 KLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERD 376

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G +P+  TYN ++    +  + H  + +L ++ + GI   + T+ +L+       D + A
Sbjct: 377 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 436

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP---- 203
             + + M                       E +    DE    +L +++  +        
Sbjct: 437 FRLFEMM-----------------------EQNGLKPDEHAYAVLTDALCKAGRAEEAYS 473

Query: 204 -LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
            ++ K  A     YTTL+ G+   G       ++    R  D    PD  TY+ ++ AL 
Sbjct: 474 FIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLI---ERMIDEGCTPDSYTYSVLLHALC 530

Query: 263 KA-----------------------------------GSMDRARQVLAEMTRIGVPANRI 287
           K                                    G  D A+++  EMT  G   +  
Sbjct: 531 KQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSAT 590

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY + +  YC++ +++ A++L+ +M  +  + PDVV+YNILIDG   +     A +    
Sbjct: 591 TYTVFINSYCKEGRLEDAEDLILKMEREG-VAPDVVTYNILIDGCGHMGYIDRAFSTLKR 649

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV----AWNMLVEGY 403
           M      P   +Y  L+K                 +L+     V  V     WN L+E  
Sbjct: 650 MVGASCEPNYWTYCLLLK----------------HLLKGNLAYVRSVDTSGMWN-LIE-- 690

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
                ++   +++ERM ++G  P V TY SL  G   A +  EA LL             
Sbjct: 691 -----LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLL------------ 733

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVE 523
               D      L P+E++   L   C    FF KAL  V+ M E G  P    Y+ + V 
Sbjct: 734 ----DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVG 789

Query: 524 M 524
           +
Sbjct: 790 L 790



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 201/510 (39%), Gaps = 71/510 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P+   Y  +L    +        +LF+ M + G KPD   Y V+   LC     +    F
Sbjct: 415 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 474

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++ +    G+ L    + +L+  +   G+ + A T+++ M +                  
Sbjct: 475 IVRK----GVALTKVYYTTLIDGFSKAGNTDFAATLIERMID------------------ 512

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI----YTTLMKGYMNEGRVS 230
            E    D     V    L      +   P+L +      +     YT L+   + EG+  
Sbjct: 513 -EGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHD 571

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              RM   M     +   P   TYT  +++  K G ++ A  ++ +M R GV  + +TYN
Sbjct: 572 HAKRMYNEM---TSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 628

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID-------GFILIDDSAG--- 340
           IL+ G      ID+A   L+ M   A  EP+  +Y +L+         ++   D++G   
Sbjct: 629 ILIDGCGHMGYIDRAFSTLKRMV-GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWN 687

Query: 341 ------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKVDI 393
                        M   G+ PT  +Y++L+  F  + + + A  + D M  +      DI
Sbjct: 688 LIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDI 747

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             + +L++  C     E+A   +  M E GF P + +Y  L  G+      G+    +++
Sbjct: 748 --YTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLC---NEGD----FEK 798

Query: 454 IKER-CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           +K   C++ + G N           DE     L D  ++A +     ++++ ME+     
Sbjct: 799 VKSLFCDLLELGYN----------HDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCI 848

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQARQDRR 542
           +   Y  +  +MH    +S   S+ R++ R
Sbjct: 849 SSQTYALVTNKMHE--VSSSLVSEVREEAR 876



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 3/205 (1%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
            Y   + +L +    +   +V +++ + G+  + +TYN ++K YC++  +  A    R +
Sbjct: 35  CYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLL 94

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            +   +EP+  + N L+ G+    +   A   F  M   G    + SYT L++    +  
Sbjct: 95  LEGG-LEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKC 153

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            + A  +F  M RD     ++ A+  L+ G C+ G V +A+ + + M +NG  P+V TY 
Sbjct: 154 VRKALVLFLMMKRDG-CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYN 212

Query: 433 SLANGISLARKPGEALLLWKEIKER 457
           ++  G S   +  +AL + KE+ E+
Sbjct: 213 AMIVGYSKLGRMNDALKI-KELMEK 236



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 125/308 (40%), Gaps = 47/308 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG+ P    ++  ++     G     E     D+++K  R+   PD+V+        
Sbjct: 580 MTSSGHKPSATTYTVFINSYCKEGRLEDAE-----DLILKMEREGVAPDVVT-------- 626

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF------ 114
           YN +++ C ++G   +      +M     +P+  TY +++K   + +  ++         
Sbjct: 627 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW 686

Query: 115 ----------VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
                     +LER+++ G+   +TT+ SL+A +   G LE A  ++  M        + 
Sbjct: 687 NLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNED 746

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           I  L ++            D + FEK L + ++  SE       F P    Y  L+ G  
Sbjct: 747 IYTLLIKCCC---------DTKFFEKAL-SFVSIMSECG-----FQPQLESYRLLVVGLC 791

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           NEG       +   +   E   +H D V +  +   L+KAG +D   Q+L+ M +     
Sbjct: 792 NEGDFEKVKSLFCDL--LELGYNH-DEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCI 848

Query: 285 NRITYNIL 292
           +  TY ++
Sbjct: 849 SSQTYALV 856


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 214/472 (45%), Gaps = 38/472 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D   +N ++N  + LG       +F ++ + G  P+ +T+N +IK LC +      L F 
Sbjct: 104 DFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNF- 162

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            ++++  G  L   ++ +L+      G +  A  +++ +         ++  + +++   
Sbjct: 163 HDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCK 222

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               +D  D  ++ +++   I+P          F  NS IY     G+   G++ + V +
Sbjct: 223 AKLVNDAFD--LYSQMVAKRISPDD--------FTCNSLIY-----GFCIMGQLKEAVGL 267

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  +  N   P   T++ +V A  K G +  A+ +L    +  +  + +TYN L+ G
Sbjct: 268 LHKMILENIN---PRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDG 324

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC   +I+KAK++   MA    I  +V SY  +I+G   I     A+  F EMR R I P
Sbjct: 325 YCLVKEINKAKDIFDSMASRGVI-ANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIP 383

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y +L+       +     K+ DEM  D     +I+ +N +++  C+   V++A  +
Sbjct: 384 NVVTYNSLIDGLGKLGKISCVLKLVDEM-HDRGQPPNIITYNSILDALCKNHHVDKAIAL 442

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +  +K+ G  P++ TY  L  G+  + K  +A    +++ E   VK  G N D      +
Sbjct: 443 LTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDA----QKVFEDLLVK--GYNLDVYTYTVM 496

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
                    +   CV+   F  AL +++ ME++G  PN   Y+ + + +  +
Sbjct: 497 ---------IQGFCVK-GLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEK 538



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 67/383 (17%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK---PDVLTYNVMI-KLCARASRKH 110
           +P+   YN +++   N+ K K     FD   +  AK   PD  T N +I   C     K 
Sbjct: 207 QPNAVMYNMIID---NMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKE 263

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
            +  + + ILE  I   M TF  LV A+   G ++ A+ ++      ++D+      LD+
Sbjct: 264 AVGLLHKMILE-NINPRMYTFSILVDAFCKEGKVKEAKMMLGVTM--KKDII-----LDV 315

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGR 228
             Y+S  +G            L   IN + +    +  +    N + YTT++ G      
Sbjct: 316 VTYNSLMDG----------YCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKM 365

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V + V +   MR ++     P+ VTY +++  L K G +    +++ EM   G P N IT
Sbjct: 366 VDEAVNLFEEMRCRK---IIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIIT 422

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN +L   C+   +DKA  LL  + D   I PD+ +Y +LI G         A   F ++
Sbjct: 423 YNSILDALCKNHHVDKAIALLTNLKDQG-IRPDMYTYTVLIKGLCQSGKLEDAQKVFEDL 481

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             +G                                      +D+  + ++++G+C  GL
Sbjct: 482 LVKG------------------------------------YNLDVYTYTVMIQGFCVKGL 505

Query: 409 VEEAKRIIERMKENGFYPNVATY 431
            + A  ++ +M++NG  PN  TY
Sbjct: 506 FDAALALLSKMEDNGCIPNAKTY 528



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 175/426 (41%), Gaps = 117/426 (27%)

Query: 173 YSSENEGDDDDDDEV--FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           YS  +   D++++ +  F  LL +  NP+  PP++       ++I ++L+K   +   +S
Sbjct: 40  YSQLHHHQDEENNLISSFNSLLHHK-NPT--PPIIQF-----NKILSSLVKAKHHSTALS 91

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
                    ++ E N    D  T+  +++   + G    +  V  ++ + G   N IT+N
Sbjct: 92  -------LHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFN 144

Query: 291 ILLKGYC-----------------QQLQIDK------------------AKELLREMADD 315
            L+KG C                 Q   +D+                  A +LL+ + D 
Sbjct: 145 TLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRV-DG 203

Query: 316 AKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
             ++P+ V YN++ID      L++D   A   +++M A+ I+P   +  +L+  F +  Q
Sbjct: 204 KLVQPNAVMYNMIIDNMCKAKLVND---AFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQ 260

Query: 373 PKLANKVFDEMLR---DPR-------------------------------VKVDIVAWNM 398
            K A  +  +M+    +PR                               + +D+V +N 
Sbjct: 261 LKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNS 320

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           L++GYC +  + +AK I + M   G   NV +Y ++ NG+   +   EA+ L++E++ R 
Sbjct: 321 LMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCR- 379

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADI----CVRAAFFRKALEIVACMEEHGIPPNK 514
                       + P +     L+D L  +    CV        L++V  M + G PPN 
Sbjct: 380 -----------KIIPNVVTYNSLIDGLGKLGKISCV--------LKLVDEMHDRGQPPNI 420

Query: 515 TKYKKI 520
             Y  I
Sbjct: 421 ITYNSI 426



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 149/329 (45%), Gaps = 19/329 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N+++     +G+ K+ + L  +M      P + T+++++    +  +      +
Sbjct: 243 PDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMM 302

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L   ++  I L + T+ SL+  Y    ++  A+ I  +M    R V       +++ Y++
Sbjct: 303 LGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSM--ASRGVIA-----NVQSYTT 355

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G          K++  ++N   E  +  +   PN   Y +L+ G    G++S  +++
Sbjct: 356 MING------LCKIKMVDEAVNLFEE--MRCRKIIPNVVTYNSLIDGLGKLGKISCVLKL 407

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M    D    P+ +TY +++ AL K   +D+A  +L  +   G+  +  TY +L+KG
Sbjct: 408 VDEMH---DRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKG 464

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            CQ  +++ A+++  ++        DV +Y ++I GF +      AL   ++M   G  P
Sbjct: 465 LCQSGKLEDAQKVFEDLLVKG-YNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIP 523

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEML 384
              +Y  ++ +     +  +A K+  EM+
Sbjct: 524 NAKTYEIVILSLFEKDENDMAEKLLREMI 552



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 111/282 (39%), Gaps = 66/282 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G + +V++++T+++ L           +K+ D  V    +     I+    P+   
Sbjct: 341 MASRGVIANVQSYTTMINGLC---------KIKMVDEAVNLFEEMRCRKII----PNVVT 387

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++    LGK    L+L D+MH+ G  P+++TYN ++    +       + +L  + 
Sbjct: 388 YNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLK 447

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI   M T+  L+      G LE                                   
Sbjct: 448 DQGIRPDMYTYTVLIKGLCQSGKLE----------------------------------- 472

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D  +VFE              LL K +  +   YT +++G+  +G     + +L  M 
Sbjct: 473 --DAQKVFED-------------LLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKM- 516

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
             EDN   P+  TY  V+ +L +    D A ++L EM   G+
Sbjct: 517 --EDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGL 556



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 55/307 (17%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   YN++++    + +  K   +FD M   G   +V +Y  MI    +       V + 
Sbjct: 314 DVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLF 373

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E +    I   + T+ SL+      G +     +V  M +                    
Sbjct: 374 EEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHD-------------------- 413

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                   +P        PN   Y +++        V   + +L
Sbjct: 414 ----------------------RGQP--------PNIITYNSILDALCKNHHVDKAIALL 443

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             ++   D    PD  TYT ++  L ++G ++ A++V  ++   G   +  TY ++++G+
Sbjct: 444 TNLK---DQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGF 500

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C +   D A  LL +M D+  I P+  +Y I+I      D++  A     EM ARG+   
Sbjct: 501 CVKGLFDAALALLSKMEDNGCI-PNAKTYEIVILSLFEKDENDMAEKLLREMIARGLLDE 559

Query: 357 KISYTTL 363
           K SY  L
Sbjct: 560 K-SYIYL 565


>gi|293333246|ref|NP_001169278.1| uncharacterized protein LOC100383141 [Zea mays]
 gi|224028343|gb|ACN33247.1| unknown [Zea mays]
          Length = 901

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 127/564 (22%), Positives = 237/564 (42%), Gaps = 76/564 (13%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P    ++T+++    SG+    E V    +V++ V            KPDT  YN +
Sbjct: 294 GVMPDTYTFNTLINIFGFSGNSAQAE-VLFASMVIRGV------------KPDTKTYNVM 340

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +   A++G  +  L+ + Q+   G  PD +TY +++++       H    V+E IL+ G 
Sbjct: 341 MTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKMVHKAEDVIEGILKAGS 400

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-----------DLEDY 173
            +   +   ++  YV  G L+ A    +    G+    K    +           + E  
Sbjct: 401 FVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKGVSSKNFSAIMDVFAGRGLWEEAEHI 460

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                GD ++ D V                            Y  ++K Y   G+     
Sbjct: 461 FCSERGDGNEKDIV---------------------------EYNVMIKAY---GQAKQYD 490

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R+       E++    D  TY +++      G   RA+++L +M   G      TY+ ++
Sbjct: 491 RVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAII 550

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           + Y +   + +A +L  EM   + +EP+V+ Y ILID F    +   AL + N +   GI
Sbjct: 551 RSYSRHCLVPEAIDLFNEM-KASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGI 609

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           +P  I  T+L+KA++  +  K A  ++  M  D     DI+A N ++  Y ++ +V EAK
Sbjct: 610 SPNHIVLTSLIKAYSKFNSWKEAQDLYSRM-NDMDGGPDIIASNAMLNLYAKLEMVTEAK 668

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            I + ++ N  + +  +Y ++A    L +  G   LL + I+   +++K G+ +D     
Sbjct: 669 EIFDSLRRNN-HADAVSYTTMA---YLYKSIG---LLSESIRITHKLQKSGLLSDC---- 717

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
                    +A+          R   E+V  M    IPP+ + ++ I+  + +   ++K 
Sbjct: 718 ------ASCNAVMACYGAKGNLRDCAELVHQMVVANIPPDASTFEMIFSLLKNGHVSTKE 771

Query: 534 ASQ---ARQDRRRERKRAAEAFKF 554
             Q   A  D ++  K+A  AF F
Sbjct: 772 ILQLESAYDDGKKSAKQAIIAFLF 795



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 21/197 (10%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE- 307
           PD V+  T V  L   G  D A  +           + +  +      C  + +D   + 
Sbjct: 183 PDEVSMNTFVRILKDEGRHDDALALFHSWCDGRFEVDFLDLD------CITVDLDGPMQF 236

Query: 308 LLREMADD------AKIEPD-------VVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           LL +M DD      A + P+       VV+YN+LID +        AL  F +M A G+ 
Sbjct: 237 LLADMYDDKIAAPAAGVAPERPRKPKLVVTYNVLIDLYGKAGKLKNALDMFLDMPAHGVM 296

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   ++ TL+  F  S     A  +F  M+    VK D   +N+++  +  +G +E   +
Sbjct: 297 PDTYTFNTLINIFGFSGNSAQAEVLFASMVIRG-VKPDTKTYNVMMTVFASIGDLEGVLK 355

Query: 415 IIERMKENGFYPNVATY 431
              +++  G +P+  TY
Sbjct: 356 YYCQIRNAGLHPDAVTY 372



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/382 (17%), Positives = 144/382 (37%), Gaps = 58/382 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    Y+A++ + +      + + LF++M   G +P+V+ Y ++I + A        + 
Sbjct: 540 EPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALH 599

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
               + + GI+       SL+ AY  F   + A+ +                      YS
Sbjct: 600 YSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDL----------------------YS 637

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             N+ D                         P   A N+     ++  Y     V++   
Sbjct: 638 RMNDMDGG-----------------------PDIIASNA-----MLNLYAKLEMVTEAKE 669

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +  ++RR     +H D V+YTT+       G +  + ++  ++ + G+ ++  + N ++ 
Sbjct: 670 IFDSLRRN----NHADAVSYTTMAYLYKSIGLLSESIRITHKLQKSGLLSDCASCNAVMA 725

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            Y  +  +    EL+ +M   A I PD  ++ ++    +L +             A    
Sbjct: 726 CYGAKGNLRDCAELVHQMV-VANIPPDASTFEMIFS--LLKNGHVSTKEILQLESAYDDG 782

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                   +   F+++     A ++  +ML  P+  +D  A N+  + Y     VE+A  
Sbjct: 783 KKSAKQAIIAFLFSVAGMHDAALEICGKMLM-PQSTLDACAHNVCFKVYASSRKVEKAFS 841

Query: 415 IIERMKENGFYPNVATYGSLAN 436
           +   M++ G  P+ +T   LA 
Sbjct: 842 LFMWMRDLGLKPDTSTCNHLAT 863


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 37/396 (9%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+ AY   G+   AE ++  + +       I     +E Y     G  ++ + +F +
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYG--RGGKCNNAEAIFRR 199

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +       SS P        P++  Y  ++K ++   +  +   +   +  ++ +   PD
Sbjct: 200 M------QSSGPE-------PSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPD 246

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
              Y  ++    KAG+ ++AR+V + M   GVP + +TYN L+       ++ K  + ++
Sbjct: 247 QKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQ 306

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
                + I+PDVVSY +LI  +        AL+ F EM   G+ PT  +Y  L+ AFA+S
Sbjct: 307 R----SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
              + A  VF  M RD R+  D+ ++  ++  Y     +E A++  +R+K +GF PN+ T
Sbjct: 363 GMVEQAKTVFKSMRRD-RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           YG+L  G + A    + +    E+ E+  +              +K ++ +L  + D   
Sbjct: 422 YGTLIKGYAKANDVEKMM----EVYEKMRL------------SGIKANQTILTTIMDASG 465

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
           R   F  AL     ME  G+PP++ K K + + + S
Sbjct: 466 RCKNFGSALGWYKEMESCGVPPDQ-KAKNVLLSLAS 500



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 153/345 (44%), Gaps = 24/345 (6%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++ A   LG      ++   + + G+ P+V++Y  +++   R  + +    +  R+   G
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSENEGDDD 182
                 T+Q ++  +V     + AE + + + + ++   K  +++  +  Y  +  G+ +
Sbjct: 205 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 264

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRR 241
              +VF  ++   +              P S + Y +LM    +   VS   ++   M+R
Sbjct: 265 KARKVFSSMVGKGV--------------PQSTVTYNSLMSFETSYKEVS---KIYDQMQR 307

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            +     PD V+Y  ++ A  +A   + A  V  EM   GV      YNILL  +     
Sbjct: 308 SD---IQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGM 364

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +++AK + + M  D +I PD+ SY  ++  ++   D  GA  FF  ++  G  P  ++Y 
Sbjct: 365 VEQAKTVFKSMRRD-RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYG 423

Query: 362 TLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCR 405
           TL+K +A ++  +   +V+++M L   +    I+   M   G C+
Sbjct: 424 TLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCK 468



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 119/256 (46%), Gaps = 31/256 (12%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T  YN++++   +    K+  +++DQM     +PDV++Y ++IK   RA R+   + V E
Sbjct: 282 TVTYNSLMSFETSY---KEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFE 338

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE- 176
            +L+ G+      +  L+ A+   G +E A+T+ ++MR  R     I    DL  Y++  
Sbjct: 339 EMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDR-----IFP--DLWSYTTML 391

Query: 177 ----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               N  D +  ++ F+++  +              F PN   Y TL+KGY    + +D 
Sbjct: 392 SAYVNASDMEGAEKFFKRIKVDG-------------FEPNIVTYGTLIKGY---AKANDV 435

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +M+    +   +    +    TT++ A  +  +   A     EM   GVP ++   N+L
Sbjct: 436 EKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVL 495

Query: 293 LKGYCQQLQIDKAKEL 308
           L     Q ++++AKEL
Sbjct: 496 LSLASTQDELEEAKEL 511


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 178/397 (44%), Gaps = 55/397 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PDT  YN ++      G+    L + D M   G  PDV+TY ++++   + S     V 
Sbjct: 149 EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVK 208

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+ + + G    + T+  +V                         +C+           
Sbjct: 209 LLDEMRDKGCAPDIVTYNVVV-----------------------NGICQ----------- 234

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG  DD  E F K LP+                PN+  Y  ++KG     R  D  +
Sbjct: 235 ---EGRVDDAME-FLKSLPS------------YGCEPNTVSYNIVLKGLCTAERWEDAEK 278

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M R+      P+ VT+  ++S L + G ++ A ++L ++ + G   N ++YN +L 
Sbjct: 279 LMAEMSRK---GRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILH 335

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            +C+Q ++D+A   + E+   +   PD+VSYN L+       +   A+   ++++ +G  
Sbjct: 336 AFCKQKKMDRAMAFV-ELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 394

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  ISY T++     + + + A ++ +EM+    ++ DI+ ++ +  G CR G +EEA +
Sbjct: 395 PVLISYNTVIDGLTKAGKTEEALELLNEMVTK-GLQPDIITYSTISSGLCREGRIEEAIK 453

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
              ++++ G  PN   Y ++  G+   R    A+ L+
Sbjct: 454 AFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLF 490



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 178/407 (43%), Gaps = 51/407 (12%)

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----ENEGDDDDD 184
           ++ ++VA Y   G L+ A  +V AM            E D   Y++        G  D+ 
Sbjct: 122 SYNAMVAGYCVTGQLDNARRLVAAMP----------MEPDTYTYNTLIRGLCGRGRTDNA 171

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             V + +L              +   P+   YT L++           V++L  MR   D
Sbjct: 172 LAVLDDMLR-------------RGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMR---D 215

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD VTY  VV+ + + G +D A + L  +   G   N ++YNI+LKG C   + + 
Sbjct: 216 KGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWED 275

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A++L+ EM+   +  P+VV++N+LI           A+   +++   G  P  +SY  ++
Sbjct: 276 AEKLMAEMSRKGR-PPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPIL 334

Query: 365 KAFALSSQPKLANKV-FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
            AF    Q K+   + F E++       DIV++N L+   CR G V+ A  ++ ++K+ G
Sbjct: 335 HAFC--KQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG 392

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             P + +Y ++ +G++ A K  EAL L  E+  +                 L+PD     
Sbjct: 393 CTPVLISYNTVIDGLTKAGKTEEALELLNEMVTK----------------GLQPDIITYS 436

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
            ++    R     +A++    +++ GI PN   Y  I + +  R  T
Sbjct: 437 TISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRAT 483



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 8/238 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y  ++ GY   G++ +  R++ AM  +      PD  TY T++  L   G  D A
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRLVAAMPME------PDTYTYNTLIRGLCGRGRTDNA 171

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             VL +M R G   + +TY ILL+  C++    +A +LL EM D     PD+V+YN++++
Sbjct: 172 LAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKG-CAPDIVTYNVVVN 230

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A+ F   + + G  P  +SY  ++K    + + + A K+  EM R  R  
Sbjct: 231 GICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR-P 289

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            ++V +NML+   CR GLVE A  I++++ + G  PN  +Y  + +     +K   A+
Sbjct: 290 PNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAM 347



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 129/314 (41%), Gaps = 63/314 (20%)

Query: 245 NASHPDHVTYTTVVS-----ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            A  P+ V + +  S      LV+ G ++ A +++  M  +  P+       L+K  C  
Sbjct: 45  GAVAPNAVPHRSAASNDRLRVLVRRGDLEEAIRLVESMAGLE-PSAAGPCAALIKKLCAS 103

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-------------------------- 333
            +  +A+ +L      A  EPDV+SYN ++ G+                           
Sbjct: 104 GRTAEARRVL------ASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPMEPDTYTYNT 157

Query: 334 LIDDSAG------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI    G      AL   ++M  RG  P  ++YT L++A    S  K A K+ DEM RD 
Sbjct: 158 LIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM-RDK 216

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               DIV +N++V G C+ G V++A   ++ +   G  PN  +Y  +  G+  A +    
Sbjct: 217 GCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAER---- 272

Query: 448 LLLWKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
              W++  K   E+ ++G            P+    + L     R      A+EI+  + 
Sbjct: 273 ---WEDAEKLMAEMSRKG----------RPPNVVTFNMLISFLCRRGLVEPAMEILDQIP 319

Query: 507 EHGIPPNKTKYKKI 520
           ++G  PN   Y  I
Sbjct: 320 KYGCTPNSLSYNPI 333



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 155/388 (39%), Gaps = 67/388 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS-------- 52
           MLR G +P V  ++ ++   A     G  ++VKL D   +   K   PDIV+        
Sbjct: 178 MLRRGCVPDVVTYTILLE--ATCKRSGYKQAVKLLD---EMRDKGCAPDIVTYNVVVNGI 232

Query: 53  -------------------DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
                                +P+T +YN VL       + +   +L  +M   G  P+V
Sbjct: 233 CQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNV 292

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           +T+N++I    R       + +L++I + G T    ++  ++ A+     ++ A   V+ 
Sbjct: 293 VTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVEL 352

Query: 154 MREGRRDVCKIIRELDLEDYSSENE--------GDDDDDDEVFEKLLPNSINPSSEPPLL 205
           M          +      D  S N         G+ D   E+  +L     +    P L+
Sbjct: 353 M----------VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK----DKGCTPVLI 398

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
                     Y T++ G    G+  + + +L  M  +      PD +TY+T+ S L + G
Sbjct: 399 S---------YNTVIDGLTKAGKTEEALELLNEMVTK---GLQPDIITYSTISSGLCREG 446

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            ++ A +   ++  +G+  N + YN +L G C++     A +L   M  +  + P+  +Y
Sbjct: 447 RIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCM-PNESTY 505

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGI 353
            ILI+G         A     E+ +RG+
Sbjct: 506 TILIEGLAYEGLVKEAREMMAELCSRGV 533


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 194/458 (42%), Gaps = 34/458 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP +   ++++  L    +    ES+         V+K  D  I     PD   
Sbjct: 160 MMEQGVLPKILICNSIIKELCKMKEMDKAESI---------VQKMVDSGIA----PDLFT 206

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++         K  ++ +QM E G +P+ +TYN +I   + +   +  V V +++ 
Sbjct: 207 YSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMS 266

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENE 178
             G+   +    S + A    G    A+ I  +M  +  + D+  I     L  Y++  +
Sbjct: 267 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDI--ISYSTMLHGYATATD 324

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
               D   +F  +L              K  APN  ++  L+  Y   G +   + +   
Sbjct: 325 SCLADVHNIFNLMLT-------------KGIAPNKHVFNILINAYARCGMMDKAMLIFED 371

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M   ++    PD VT+ TV+S+L + G +D A      M  IGVP +   Y  L++G C 
Sbjct: 372 M---QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCN 428

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ KAKEL+ EM +     P V  ++ +I+        A      + M   G  P  +
Sbjct: 429 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVV 488

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++ +LM+ + L    + A  + D M     ++ +   +  LV+GYC+ G +++A  +   
Sbjct: 489 TFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRD 547

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           M   G  P    Y  + +G+  AR+   A  ++ E+ E
Sbjct: 548 MLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 585



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/482 (22%), Positives = 199/482 (41%), Gaps = 97/482 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P+   +++++   + SG     ESV++F       ++ S   ++    P    
Sbjct: 230 MVEAGTRPNSITYNSLIHGYSISGMWN--ESVRVF-------KQMSSCGVI----PTVDN 276

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLER 118
            N+ ++A    G+  +   +FD M   G KPD+++Y+ M+   A A+   L  +  +   
Sbjct: 277 CNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNL 336

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIR 166
           +L  GI      F  L+ AY   G ++ A  I + M+                 +C+I  
Sbjct: 337 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI-- 394

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                       G  DD    F  ++   + PS               +Y  L++G  N 
Sbjct: 395 ------------GRLDDALHKFNHMVDIGVPPSEA-------------VYGCLIQGCCNH 429

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G +     ++  M  ++     P    ++++++ L K G +   + ++  M + G   N 
Sbjct: 430 GELVKAKELISEMMNKD--IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNV 487

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALT 343
           +T+N L++GYC    +++A  LL  MA    IEP+   Y  L+DG+     IDD   ALT
Sbjct: 488 VTFNSLMEGYCLVGNMEEAFALLDAMAS-IGIEPNCYIYGTLVDGYCKNGRIDD---ALT 543

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP---------------- 387
            F +M  +G+ PT + Y+ ++     + +   A K+F EM+                   
Sbjct: 544 VFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLC 603

Query: 388 ------------------RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                              VK DI+ +N+++    ++G  +EAK + + +   G  PN+ 
Sbjct: 604 RNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQ 663

Query: 430 TY 431
           TY
Sbjct: 664 TY 665



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 28/319 (8%)

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
           E  +LPK    NS I   L K  M E   ++++     +++  D+   PD  TY+ ++  
Sbjct: 162 EQGVLPKILICNS-IIKELCK--MKEMDKAESI-----VQKMVDSGIAPDLFTYSLIIDG 213

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L K+ +MD+A +VL +M   G   N ITYN L+ GY      +++  + ++M+    I P
Sbjct: 214 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVI-P 272

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA--NK 378
            V + N  I        +  A   F+ M  +G  P  ISY+T++  +A ++   LA  + 
Sbjct: 273 TVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHN 332

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+ ML    +  +   +N+L+  Y R G++++A  I E M+  G  P+  T+ ++ + +
Sbjct: 333 IFNLMLTKG-IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 391

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
               +  +AL  +  +             D  +PP     E +   L   C       KA
Sbjct: 392 CRIGRLDDALHKFNHM------------VDIGVPP----SEAVYGCLIQGCCNHGELVKA 435

Query: 499 LEIVACMEEHGIPPNKTKY 517
            E+++ M    IPP   KY
Sbjct: 436 KELISEMMNKDIPPPGVKY 454



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 172/391 (43%), Gaps = 45/391 (11%)

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           P + TYN++I    R  R  L + ++ R+L+ G+     ++ SL+  +V  G+++ A  +
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 156

Query: 151 -VQAMREG---RRDVCK-IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            ++ M +G   +  +C  II+EL           + D  + + +K++ + I         
Sbjct: 157 FLEMMEQGVLPKILICNSIIKELC-------KMKEMDKAESIVQKMVDSGI--------- 200

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
               AP+   Y+ ++ G      +    R+L  M    +  + P+ +TY +++     +G
Sbjct: 201 ----APDLFTYSLIIDGLCKSKAMDKAERVLEQMV---EAGTRPNSITYNSLIHGYSISG 253

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
             + + +V  +M+  GV       N  +    +  + ++AK +   M      +PD++SY
Sbjct: 254 MWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISY 312

Query: 326 NILIDGFILIDDS--AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           + ++ G+    DS  A     FN M  +GIAP K  +  L+ A+A       A  +F++M
Sbjct: 313 STMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDM 372

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                +  D V +  ++   CR+G +++A      M + G  P+ A YG L  G      
Sbjct: 373 QNKGMIP-DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCC---N 428

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
            GE +   + I E           + D+PPP
Sbjct: 429 HGELVKAKELISEM---------MNKDIPPP 450



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 136/315 (43%), Gaps = 20/315 (6%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P+   P    Y  L+  Y    R    + ++G + +   N   PD  +Y+ ++   VK G
Sbjct: 93  PRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLK---NGLGPDDFSYS-LIYGFVKDG 148

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D+A  +  EM   GV    +  N ++K  C+  ++DKA+ ++++M D   I PD+ +Y
Sbjct: 149 EVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG-IAPDLFTY 207

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           +++IDG         A     +M   G  P  I+Y +L+  +++S     + +VF +M  
Sbjct: 208 SLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQM-S 266

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              V   +   N  +    + G   EAK I + M   G  P++ +Y ++ +G + A    
Sbjct: 267 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATA---- 322

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
                     + C      +  +  L   + P++ + + L +   R     KA+ I   M
Sbjct: 323 ---------TDSCLADVHNI-FNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDM 372

Query: 506 EEHGIPPNKTKYKKI 520
           +  G+ P+   +  +
Sbjct: 373 QNKGMIPDTVTFATV 387


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 172/402 (42%), Gaps = 55/402 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  A N  ++      +    LQ+ ++M   G  PDV+TY  ++       R    V +
Sbjct: 263 PDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGL 322

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E ++  G+   +    +L+     FG                  +CK            
Sbjct: 323 WEEMVRRGLKPDVVACGALI-----FG------------------LCK------------ 347

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                +   DE FE              +L      N  IY  L+ G+   G +    + 
Sbjct: 348 -----NQKVDEAFEL----------ASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKT 392

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M+R   N   PD VTY  +++     G  D+A  ++ +M   GV  +R +YNILLKG
Sbjct: 393 VSFMQR---NGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKG 449

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  Q+DKA   + +  +      D+VS NILID F        AL  F EM  +GI  
Sbjct: 450 LCKAHQLDKAFAFVSDHMEVGGF-CDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQA 508

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y  L+          LA ++FD+ML + ++  ++  +N+++   C++G  + A++I
Sbjct: 509 DAVTYGILINGLFGIGYSNLAEELFDQML-NTKIVPNVNVYNIMLHNLCKVGHFKHAQKI 567

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             +M +    P+  T+ +L   +  + +  EAL L+KE++ +
Sbjct: 568 FWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTK 609



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 26/373 (6%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           + PD   Y  V++   +  +  + + L+++M   G KPDV+    +I    +  +     
Sbjct: 296 TGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAF 355

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK---IIRELDL 170
            +  R+L + I L ++ + +L++ +   G +E A   V  M   +R+ C+   +   + L
Sbjct: 356 ELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFM---QRNGCEPDVVTYNILL 412

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             Y S   G  D  + +  K+  + +NP                 Y  L+KG     ++ 
Sbjct: 413 NHYCS--IGMTDKAENLIRKMEMSGVNPDRYS-------------YNILLKGLCKAHQLD 457

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              +    +    +     D V+   ++ A  +A  ++ A  +  EM   G+ A+ +TY 
Sbjct: 458 ---KAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYG 514

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           IL+ G       + A+EL  +M  + KI P+V  YNI++     +     A   F +M  
Sbjct: 515 ILINGLFGIGYSNLAEELFDQML-NTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQ 573

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + ++P  +++ TL+     SS+   A  +F EM R   V+ D + +  ++ G    G   
Sbjct: 574 KEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEM-RTKGVEPDNLTFRYIISGLLDEGKAT 632

Query: 411 EAKRIIERMKENG 423
            A  I E M ENG
Sbjct: 633 LAYEIWEYMMENG 645



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 116/269 (43%), Gaps = 45/269 (16%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
            P  +A N  IY   + G+    R+ D ++M+  M  +    + PD VTYTTVVS L   
Sbjct: 262 FPDFWACN--IYVHYLCGH---NRLYDALQMVEKMTMK---GTGPDVVTYTTVVSCLCDH 313

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL-REMADDAKI----- 318
                A  +  EM R G+  + +    L+ G C+  ++D+A EL  R +  D ++     
Sbjct: 314 RRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIY 373

Query: 319 ----------------------------EPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
                                       EPDVV+YNIL++ +  I  +  A     +M  
Sbjct: 374 NALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEM 433

Query: 351 RGIAPTKISYTTLMKAFALSSQ-PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            G+ P + SY  L+K    + Q  K    V D M  +     DIV+ N+L++ +CR   V
Sbjct: 434 SGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHM--EVGGFCDIVSCNILIDAFCRAKKV 491

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGI 438
             A  + + M   G   +  TYG L NG+
Sbjct: 492 NSALNLFKEMGYKGIQADAVTYGILINGL 520



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 120/309 (38%), Gaps = 21/309 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           A +  +Y  L+ GY   G+    +     M     +      V Y   +  ++K    D 
Sbjct: 157 AFHRSLYRVLLAGYARAGKFDSVIETFDEM---VTSGCREFGVDYNRFIGVMIKNCCFDL 213

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             +        G      TY+  +   CQ  +I+  +ELL +M D     PD  + NI +
Sbjct: 214 VEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDM-DKFGCFPDFWACNIYV 272

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
                 +    AL    +M  +G  P  ++YTT++       +   A  +++EM+R   +
Sbjct: 273 HYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRG-L 331

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           K D+VA   L+ G C+   V+EA  +  RM       NV+ Y +L +G   A        
Sbjct: 332 KPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGS------ 385

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           + K  K    +++ G           +PD    + L +         KA  ++  ME  G
Sbjct: 386 IEKAYKTVSFMQRNGC----------EPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSG 435

Query: 510 IPPNKTKYK 518
           + P++  Y 
Sbjct: 436 VNPDRYSYN 444



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 25/304 (8%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++S L    +     + L  +   GV  +R  Y +LL GY +  + D   E   EM    
Sbjct: 131 IISLLFVDDNFALLSEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSG 190

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALT--FFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
             E  V  YN  I   ++I +    L   ++N   A+G   T  +Y+  + A   S++ +
Sbjct: 191 CREFGV-DYNRFIG--VMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIE 247

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           L  ++  +M +      D  A N+ V   C    + +A +++E+M   G  P+V TY ++
Sbjct: 248 LVEELLTDMDKFGCFP-DFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTV 306

Query: 435 ANGISLARKPGEALLLWKEIKER--------CE------VKKEGVN-----ADSDLPPPL 475
            + +   R+  EA+ LW+E+  R        C        K + V+     A   L   +
Sbjct: 307 VSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDI 366

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
           + +  + +AL     RA    KA + V+ M+ +G  P+   Y  +     S   T K  +
Sbjct: 367 QLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAEN 426

Query: 536 QARQ 539
             R+
Sbjct: 427 LIRK 430



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 108/280 (38%), Gaps = 48/280 (17%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL 112
            +PD   YN +LN   ++G   K   L  +M   G  PD  +YN+++K LC         
Sbjct: 401 CEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAF 460

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDL 170
            FV +  +E+G                GF D+     ++ A    ++      + +E+  
Sbjct: 461 AFVSDH-MEVG----------------GFCDIVSCNILIDAFCRAKKVNSALNLFKEMGY 503

Query: 171 EDYSSE------------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
           +   ++              G  +  +E+F+++L   I              PN  +Y  
Sbjct: 504 KGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKI-------------VPNVNVYNI 550

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++      G      ++   M ++E +   PD VT+ T++  L K+     A  +  EM 
Sbjct: 551 MLHNLCKVGHFKHAQKIFWQMTQKEVS---PDTVTFNTLIYWLGKSSRAVEALDLFKEMR 607

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
             GV  + +T+  ++ G   + +   A E+   M ++  I
Sbjct: 608 TKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGII 647


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 172/402 (42%), Gaps = 55/402 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  A N  ++      +    LQ+ ++M   G  PDV+TY  ++       R    V +
Sbjct: 263 PDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGL 322

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E ++  G+   +    +L+     FG                  +CK            
Sbjct: 323 WEEMVRRGLKPDVVACGALI-----FG------------------LCK------------ 347

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                +   DE FE              +L      N  IY  L+ G+   G +    + 
Sbjct: 348 -----NQKVDEAFEL----------ASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKT 392

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M+R   N   PD VTY  +++     G  D+A  ++ +M   GV  +R +YNILLKG
Sbjct: 393 VSFMQR---NGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKG 449

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  Q+DKA   + +  +      D+VS NILID F        AL  F EM  +GI  
Sbjct: 450 LCKAHQLDKAFAFVSDHMEVGGF-CDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQA 508

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y  L+          LA ++FD+ML + ++  ++  +N+++   C++G  + A++I
Sbjct: 509 DAVTYGILINGLFGIGYSNLAEELFDQML-NTKIVPNVNVYNIMLHNLCKVGHFKHAQKI 567

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             +M +    P+  T+ +L   +  + +  EAL L+KE++ +
Sbjct: 568 FWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTK 609



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 26/373 (6%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           + PD   Y  V++   +  +  + + L+++M   G KPDV+    +I    +  +     
Sbjct: 296 TGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAF 355

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK---IIRELDL 170
            +  R+L + I L ++ + +L++ +   G +E A   V  M   +R+ C+   +   + L
Sbjct: 356 ELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFM---QRNGCEPDVVTYNILL 412

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             Y S   G  D  + +  K+  + +NP                 Y  L+KG     ++ 
Sbjct: 413 NHYCS--IGMTDKAENLIRKMEMSGVNPDRYS-------------YNILLKGLCKAHQLD 457

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              +    +    +     D V+   ++ A  +A  ++ A  +  EM   G+ A+ +TY 
Sbjct: 458 ---KAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYG 514

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           IL+ G       + A+EL  +M  + KI P+V  YNI++     +     A   F +M  
Sbjct: 515 ILINGLFGIGYSNLAEELFDQML-NTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQ 573

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + ++P  +++ TL+     SS+   A  +F EM R   V+ D + +  ++ G    G   
Sbjct: 574 KEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEM-RTKGVEPDNLTFRYIISGLLDEGKAT 632

Query: 411 EAKRIIERMKENG 423
            A  I E M ENG
Sbjct: 633 LAYEIWEYMMENG 645



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 116/269 (43%), Gaps = 45/269 (16%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
            P  +A N  IY   + G+    R+ D ++M+  M  +    + PD VTYTTVVS L   
Sbjct: 262 FPDFWACN--IYVHYLCGH---NRLYDALQMVEKMTMK---GTGPDVVTYTTVVSCLCDH 313

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL-REMADDAKI----- 318
                A  +  EM R G+  + +    L+ G C+  ++D+A EL  R +  D ++     
Sbjct: 314 RRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIY 373

Query: 319 ----------------------------EPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
                                       EPDVV+YNIL++ +  I  +  A     +M  
Sbjct: 374 NALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEM 433

Query: 351 RGIAPTKISYTTLMKAFALSSQ-PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            G+ P + SY  L+K    + Q  K    V D M  +     DIV+ N+L++ +CR   V
Sbjct: 434 SGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHM--EVGGFCDIVSCNILIDAFCRAKKV 491

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGI 438
             A  + + M   G   +  TYG L NG+
Sbjct: 492 NSALNLFKEMGYKGIQADAVTYGILINGL 520



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 120/309 (38%), Gaps = 21/309 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           A +  +Y  L+ GY   G+    +     M     +      V Y   +  ++K    D 
Sbjct: 157 AFHRSLYRVLLAGYARAGKFDSVIETFDEM---VTSGCREFGVDYNRFIGVMIKNCCFDL 213

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             +        G      TY+  +   CQ  +I+  +ELL +M D     PD  + NI +
Sbjct: 214 VEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDM-DKFGCFPDFWACNIYV 272

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
                 +    AL    +M  +G  P  ++YTT++       +   A  +++EM+R   +
Sbjct: 273 HYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRG-L 331

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           K D+VA   L+ G C+   V+EA  +  RM       NV+ Y +L +G   A        
Sbjct: 332 KPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGS------ 385

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           + K  K    +++ G           +PD    + L +         KA  ++  ME  G
Sbjct: 386 IEKAYKTVSFMQRNGC----------EPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSG 435

Query: 510 IPPNKTKYK 518
           + P++  Y 
Sbjct: 436 VNPDRYSYN 444



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 25/304 (8%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++S L    +     + L  +   GV  +R  Y +LL GY +  + D   E   EM    
Sbjct: 131 IISLLFVDDNFALLLEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSG 190

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALT--FFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
             E  V  YN  I   ++I +    L   ++N   A+G   T  +Y+  + A   S++ +
Sbjct: 191 CREFGV-DYNRFIG--VMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIE 247

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           L  ++  +M +      D  A N+ V   C    + +A +++E+M   G  P+V TY ++
Sbjct: 248 LVEELLTDMDKFGCFP-DFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTV 306

Query: 435 ANGISLARKPGEALLLWKEIKER--------CE------VKKEGVN-----ADSDLPPPL 475
            + +   R+  EA+ LW+E+  R        C        K + V+     A   L   +
Sbjct: 307 VSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDI 366

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
           + +  + +AL     RA    KA + V+ M+ +G  P+   Y  +     S   T K  +
Sbjct: 367 QLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAEN 426

Query: 536 QARQ 539
             R+
Sbjct: 427 LIRK 430



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 108/280 (38%), Gaps = 48/280 (17%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL 112
            +PD   YN +LN   ++G   K   L  +M   G  PD  +YN+++K LC         
Sbjct: 401 CEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAF 460

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDL 170
            FV +  +E+G                GF D+     ++ A    ++      + +E+  
Sbjct: 461 AFVSDH-MEVG----------------GFCDIVSCNILIDAFCRAKKVNSALNLFKEMGY 503

Query: 171 EDYSSE------------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
           +   ++              G  +  +E+F+++L   I              PN  +Y  
Sbjct: 504 KGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKI-------------VPNVNVYNI 550

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++      G      ++   M ++E +   PD VT+ T++  L K+     A  +  EM 
Sbjct: 551 MLHNLCKVGHFKHAQKIFWQMTQKEVS---PDTVTFNTLIYWLGKSSRAVEALDLFKEMR 607

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
             GV  + +T+  ++ G   + +   A E+   M ++  I
Sbjct: 608 TKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGII 647


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 176/386 (45%), Gaps = 23/386 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCAR--ASRKHLL 112
           PD   +N V++    +G+ +K   +   +  +G  P V TYN +I   C +  A   + +
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +L+ ++E GI+    TF  L+  Y    +   A  + + M++       +     +  
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
             SE  G  ++  ++ E++    +             +PN   +  ++KG+  +G ++D 
Sbjct: 309 LCSE--GKVEEGVKLMEEMEDLGL-------------SPNEITFGCVLKGFCKKGMMADA 353

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
              +  M   E N   PD V YT ++    + G M+ A  V   M + G+  N  TYN L
Sbjct: 354 NDWIDGM--TERNV-EPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCL 410

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+ +      A  LL EM +   IE DVV+YN+LI       +   A+   +EM   G
Sbjct: 411 ITGFSRSGDWRSASGLLDEMKEKG-IEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++Y T+++ F      K A ++   M    R + ++V +N+ ++ +C++G ++EA
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM-EKCRKRANVVTYNVFIKYFCQIGKMDEA 528

Query: 413 KRIIERMKENGFYPNVATYGSLANGI 438
             ++  M +    PN  TY ++  G+
Sbjct: 529 NDLLNEMLDKCLVPNGITYETIKEGM 554



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 60/376 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRML-GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           P++     L+ G +   RV    +    A+RR+      PD  T+ TV+S L + G + +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRR----VSPDIYTFNTVISGLCRIGQLRK 209

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQL---QIDKAKELLREMADDAKIEPDVVSYN 326
           A  V  ++   G+  +  TYN L+ GYC++     +     LL+EM + A I P  V++ 
Sbjct: 210 AGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVE-AGISPTAVTFG 268

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--- 383
           +LI+G+    ++A A+  F EM+ +GIA + ++Y +L+       + +   K+ +EM   
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL 328

Query: 384 -------------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
                                          + +  V+ D+V + +L++GY R+G +E+A
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDA 388

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             + E M + G  PNV TY  L  G S +     A  L  E+KE+      G+ AD    
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK------GIEAD---- 438

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             +     L+ AL   C +    RKA++++  M E G+ PN   Y  I ++        K
Sbjct: 439 --VVTYNVLIGAL---CCKGE-VRKAVKLLDEMSEVGLEPNHLTYNTI-IQGFCDKGNIK 491

Query: 533 HASQARQDRRRERKRA 548
            A + R    + RKRA
Sbjct: 492 SAYEIRTRMEKCRKRA 507



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 176/409 (43%), Gaps = 23/409 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P T++ NA+L       +     + F         PD+ T+N +I    R  +      
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 115 VLERILEMGITLCMTTFQSLVAAYV---GFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           V + I   G+   + T+ SL+  Y    G G++   + +++ M E       +   + + 
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y   +  +      VFE++    I             A +   Y +L+ G  +EG+V +
Sbjct: 273 GYCKNS--NTAAAVRVFEEMKQQGI-------------AASVVTYNSLISGLCSEGKVEE 317

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V++   M   ED    P+ +T+  V+    K G M  A   +  MT   V  + + Y I
Sbjct: 318 GVKL---MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTI 374

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GY +  +++ A  +   MA    I P+V +YN LI GF    D   A    +EM+ +
Sbjct: 375 LIDGYRRLGKMEDAMAVKEAMAKKG-ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           GI    ++Y  L+ A     + + A K+ DEM  +  ++ + + +N +++G+C  G ++ 
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           A  I  RM++     NV TY           K  EA  L  E+ ++C V
Sbjct: 493 AYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 159/390 (40%), Gaps = 50/390 (12%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK-----P 56
           LR    P +  ++TV+S L   G                ++RK  D  +  D K     P
Sbjct: 183 LRRRVSPDIYTFNTVISGLCRIG----------------QLRKAGD--VAKDIKAWGLAP 224

Query: 57  DTAAYNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
             A YN++++     G          L  +M E G  P  +T+ V+I    + S     V
Sbjct: 225 SVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE------------GRRDV 161
            V E + + GI   + T+ SL++     G +E    +++ M +              +  
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGF 344

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP--------SSEPPLLPKTFAPNS 213
           CK     D  D+       + + D V   +L +            + +  +  K  +PN 
Sbjct: 345 CKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNV 404

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  L+ G+   G       +L  M+ +   A   D VTY  ++ AL   G + +A ++
Sbjct: 405 TTYNCLITGFSRSGDWRSASGLLDEMKEKGIEA---DVVTYNVLIGALCCKGEVRKAVKL 461

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM+ +G+  N +TYN +++G+C +  I  A E +R   +  +   +VV+YN+ I  F 
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYE-IRTRMEKCRKRANVVTYNVFIKYFC 520

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            I     A    NEM  + + P  I+Y T+
Sbjct: 521 QIGKMDEANDLLNEMLDKCLVPNGITYETI 550



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 147/351 (41%), Gaps = 38/351 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  +++++      G  G +  V   D+++K +       + +   P    +  +
Sbjct: 221 GLAPSVATYNSLIDGYCKKGGAGNMYHV---DMLLKEM-------VEAGISPTAVTFGVL 270

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N           +++F++M + G    V+TYN +I       +    V ++E + ++G+
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
           +    TF  ++  +   G +  A   +  M E   +   +I  + ++ Y     G  +D 
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGY--RRLGKMEDA 388

Query: 185 DEVFEKLLPNSINPS------------------SEPPLL----PKTFAPNSRIYTTLMKG 222
             V E +    I+P+                  S   LL     K    +   Y  L+  
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              +G V   V++L  M    +    P+H+TY T++      G++  A ++   M +   
Sbjct: 449 LCCKGEVRKAVKLLDEM---SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRK 505

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            AN +TYN+ +K +CQ  ++D+A +LL EM D   + P+ ++Y  + +G +
Sbjct: 506 RANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV-PNGITYETIKEGMM 555



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 24/215 (11%)

Query: 40  KRVRKFSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
           +R+ K  D   V ++       P+   YN ++   +  G  +    L D+M E G + DV
Sbjct: 380 RRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADV 439

Query: 94  LTYNVMI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           +TYNV+I  LC +   +   V +L+ + E+G+     T+ +++  +   G+++ A  I  
Sbjct: 440 VTYNVLIGALCCKGEVRKA-VKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRT 498

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
            M + R+    +   + ++ +    + D+ +D       L N         +L K   PN
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEAND-------LLNE--------MLDKCLVPN 543

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
              Y T+ +G M +G   D +R     +  E+ AS
Sbjct: 544 GITYETIKEGMMEKGYTPD-IRGCTVSQASENPAS 577



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 121/299 (40%), Gaps = 31/299 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G    V  +++++S L + G     E VKL +       +  D  +     P+   
Sbjct: 290 MKQQGIAASVVTYNSLISGLCSEGK--VEEGVKLME-------EMEDLGL----SPNEIT 336

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  VL      G         D M E   +PDV+ Y ++I    R  +    + V E + 
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMA 396

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI+  +TT+  L+  +   GD   A  ++  M+E      K I E D+  Y+    G 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE------KGI-EADVVTYNVL-IGA 448

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                EV + +    ++  SE  L      PN   Y T+++G+ ++G +     +     
Sbjct: 449 LCCKGEVRKAV--KLLDEMSEVGL-----EPNHLTYNTIIQGFCDKGNIKSAYEI---RT 498

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R E      + VTY   +    + G MD A  +L EM    +  N ITY  + +G  ++
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEK 557


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 127/532 (23%), Positives = 222/532 (41%), Gaps = 77/532 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N VL A  +  +      + ++M + G +P ++TYN ++    +  RK  +  +
Sbjct: 167 PDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAML 226

Query: 116 LERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------- 158
           L+ +   G + C+    T+  ++      GDLE A  +V+ MR  +              
Sbjct: 227 LKEMETRG-SGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGL 285

Query: 159 --RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
             R   K + +L LE    ENEG                        ++P     N+ I+
Sbjct: 286 LARGCVKKVYDLQLE---MENEG------------------------IMPTVVTYNAMIH 318

Query: 217 TTLMKGYMNEGRVS-DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
             L  G +   +V    +R +G +         PD +TY ++++   KAG++  A  +  
Sbjct: 319 GLLQSGLVEAAQVKFAEMRAMGLL---------PDVITYNSLLNGYCKAGNLKEALLLFG 369

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           ++ R G+    +TYNI + GYC+   +++A+ L  EM +   + P+V +Y IL+ G + +
Sbjct: 370 DLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCL-PNVCTYTILMKGSLNV 428

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
              A A  FF+EM ++G+ P   +Y T + A  +      A ++  E+L    +  D V 
Sbjct: 429 CSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALEL-REVLMLEGISSDTVT 487

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L+ G C+ G +++AK +  +M  NG  P+  TY  L +         E  LL     
Sbjct: 488 YNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHC------ERGLLR---- 537

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
              E +K   N  SD    L P       +     R      A      M E G+ PN+ 
Sbjct: 538 ---EARKIFNNMISD---GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEI 591

Query: 516 KYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEW 567
            Y  + +    RM  ++ AS    +   ER   A  + + L +  +     W
Sbjct: 592 TY-NVLIHALCRMGRTQLASHHFHE-MLERGLVANKYTYTLLIDGNCKVGNW 641



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 198/456 (43%), Gaps = 41/456 (8%)

Query: 4   SGYLPHVKAWSTVVSRLAASGD--------DGPVESVK--------LFDVVVKR--VRKF 45
           SG LP+   ++ V++ L   GD        +G   S K        L   ++ R  V+K 
Sbjct: 235 SGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKV 294

Query: 46  SDPDIVSDSK---PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
            D  +  +++   P    YNA+++     G  +     F +M   G  PDV+TYN ++  
Sbjct: 295 YDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNG 354

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
             +A      + +   +   G+   + T+   +  Y   GDLE A  + + M  G +   
Sbjct: 355 YCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEM--GEQGCL 412

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
             +    +    S N        E F+++L   + P          FA N+RI   L+ G
Sbjct: 413 PNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDC--------FAYNTRICAELILG 464

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
            +        V ML  +          D VTY  ++  L K G++  A+++  +M   G+
Sbjct: 465 DIARALELREVLMLEGIS--------SDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGL 516

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             + ITY  L+  +C++  + +A+++   M  D  + P  V++ ++I  +    +   A 
Sbjct: 517 QPDCITYTCLIHAHCERGLLREARKIFNNMISDGLL-PSAVTFTVIIHAYCRRGNLYSAY 575

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            +F +M   G+ P +I+Y  L+ A     + +LA+  F EML    V  +   + +L++G
Sbjct: 576 GWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLV-ANKYTYTLLIDG 634

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            C++G  E+A R    M +NG +P+  T+ +L  G 
Sbjct: 635 NCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGF 670



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 148/315 (46%), Gaps = 43/315 (13%)

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSENEGDDD 182
           TLC++ F+ + +  V   D++    +++A+R+  R  D+C                    
Sbjct: 151 TLCLSAFREMASHGVA-PDVKDCNHVLRALRDAARWDDICA------------------- 190

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
               V E++L   I PS                Y TL+  ++ EGR  D V ML      
Sbjct: 191 ----VHEEMLQLGIEPSIVT-------------YNTLLDSFLKEGR-KDKVAMLLKEMET 232

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
             +   P+ VTY  V++ L + G ++ A + L E  R+   A+  TYN L+ G   +  +
Sbjct: 233 RGSGCLPNDVTYNVVITGLTRKGDLEEAAE-LVEGMRLSKKASSFTYNPLITGLLARGCV 291

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            K  +L  EM ++  I P VV+YN +I G +       A   F EMRA G+ P  I+Y +
Sbjct: 292 KKVYDLQLEMENEG-IMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNS 350

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  +  +   K A  +F + LR   +   ++ +N+ ++GYCR+G +EEA+ + E M E 
Sbjct: 351 LLNGYCKAGNLKEALLLFGD-LRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQ 409

Query: 423 GFYPNVATYGSLANG 437
           G  PNV TY  L  G
Sbjct: 410 GCLPNVCTYTILMKG 424



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 160/387 (41%), Gaps = 37/387 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P V  ++ ++  L  SG    VE+ ++         KF++   +    PD   
Sbjct: 301 MENEGIMPTVVTYNAMIHGLLQSG---LVEAAQV---------KFAEMRAMG-LLPDVIT 347

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++LN     G  K+ L LF  +   G  P VLTYN+ I    R         + E + 
Sbjct: 348 YNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMG 407

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVC-----KIIRELDLEDYS 174
           E G    + T+  L+   +    L +A E   + + +G +  C     +I  EL L D +
Sbjct: 408 EQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIA 467

Query: 175 SENEG------DDDDDDEVFEKLLPNSINPSS--------EPPLLPKTFAPNSRIYTTLM 220
              E       +    D V   +L + +  +         +  ++     P+   YT L+
Sbjct: 468 RALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLI 527

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
             +   G + +  ++   M     +   P  VT+T ++ A  + G++  A     +M   
Sbjct: 528 HAHCERGLLREARKIFNNMI---SDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEE 584

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           GV  N ITYN+L+   C+  +   A     EM +   +  +  +Y +LIDG   + +   
Sbjct: 585 GVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLV-ANKYTYTLLIDGNCKVGNWED 643

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAF 367
           A+ F+ EM   GI P  +++  L+K F
Sbjct: 644 AMRFYFEMHQNGIHPDYLTHKALVKGF 670



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L A R    +   PD      V+ AL  A   D    V  EM ++G+  + +TYN LL  
Sbjct: 154 LSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDS 213

Query: 296 YCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           + ++ + DK   LL+EM    +   P+ V+YN++I G     D   A      MR    A
Sbjct: 214 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA 273

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLR--DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            +  +Y  L+         K   KV+D  L   +  +   +V +N ++ G  + GLVE A
Sbjct: 274 -SSFTYNPLITGLLARGCVK---KVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAA 329

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +     M+  G  P+V TY SL NG   A    EALLL+ +++
Sbjct: 330 QVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLR 372


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 174/383 (45%), Gaps = 18/383 (4%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   Y  +++   N G   +  +LFD+M   G   +V+TY+ ++    R  +      VL
Sbjct: 248 DVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVL 307

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             + E GI   + T+  L+      G    A  ++  M E   +   +   + L     E
Sbjct: 308 NAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKE 367

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
               D        K+L   I    +  ++          Y TLMKG  ++G+V + +++ 
Sbjct: 368 GLVIDA------FKILRMMIEKGKKADVVT---------YNTLMKGLCDKGKVDEALKLF 412

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            +M   E N   P+  T+  ++  L K G + +A ++  +M + G   N +TYN+LL G 
Sbjct: 413 NSMFDNE-NCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGC 471

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            +  +I +A EL +++ D   + P+  +Y+ILIDGF  +     A   F EMR  G+ P 
Sbjct: 472 LKAGKIKEAMELWKQVLDLGFV-PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPA 530

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
              Y TLM +       + A  +F EM  +   + DI+++N +++G  + G  +  K + 
Sbjct: 531 LFDYNTLMASLCKEGSLEQAKSLFQEM-GNANCEPDIISFNTMIDGTLKAGDFQFVKELQ 589

Query: 417 ERMKENGFYPNVATYGSLANGIS 439
            +M E G  P+  T+ +L N +S
Sbjct: 590 MKMVEMGLRPDALTFSTLINRLS 612



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 183/410 (44%), Gaps = 34/410 (8%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N VL      G   + + L  +M      PD+++YN +I    +A +    V +L   LE
Sbjct: 148 NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLL---LE 204

Query: 122 MGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           M    C     T  +L+      G ++ A  +++AM++   D   ++    +  +   N 
Sbjct: 205 MEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFC--NN 262

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G+ D   E+F+++L   I             + N   Y+ L+ G    G+  +   +L A
Sbjct: 263 GNLDRGKELFDEMLGKGI-------------SANVVTYSCLVHGLCRLGQWKEANTVLNA 309

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    ++  HPD VTYT ++  L K G    A  +L  M   G   + +TYN+LL G C+
Sbjct: 310 M---AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCK 366

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM--RARGIAPT 356
           +  +  A ++LR M +  K + DVV+YN L+ G         AL  FN M      + P 
Sbjct: 367 EGLVIDAFKILRMMIEKGK-KADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPN 425

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             ++  L+       +   A K+  +M++      ++V +NML+ G  + G ++EA  + 
Sbjct: 426 VFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG-NLVTYNMLLGGCLKAGKIKEAMELW 484

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           +++ + GF PN  TY  L +G    R    A  L+      CE++  G+N
Sbjct: 485 KQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF------CEMRTHGLN 528



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/521 (21%), Positives = 229/521 (43%), Gaps = 49/521 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+  +V   + V+  L  +G  G  E++ L   + +  RK   PDIVS        
Sbjct: 135 VLKRGFTVNVFIMNIVLKGLCRNG--GVFEAMGL---IREMGRKSVSPDIVS-------- 181

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N      K K+ + L  +M   G  P+ +T   ++    +  R    + +LE + 
Sbjct: 182 YNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMK 241

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    +  + +L++ +   G+L+  + +   M    + +   +       +     G 
Sbjct: 242 KKGFDADVVLYGTLISGFCNNGNLDRGKELFDEML--GKGISANVVTYSCLVHGLCRLGQ 299

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             + + V   +  + I+P             +   YT L+ G   +GR +  + +L  M 
Sbjct: 300 WKEANTVLNAMAEHGIHP-------------DVVTYTGLIDGLCKDGRATHAMDLLNLMV 346

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P +VTY  ++S L K G +  A ++L  M   G  A+ +TYN L+KG C + 
Sbjct: 347 EK---GEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKG 403

Query: 301 QIDKAKELLREMADDAK-IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
           ++D+A +L   M D+   +EP+V ++N+LI G         A+    +M  +G     ++
Sbjct: 404 KVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVT 463

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+     + + K A +++ ++L D     +   +++L++G+C+M ++  AK +   M
Sbjct: 464 YNMLLGGCLKAGKIKEAMELWKQVL-DLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM 522

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           + +G  P +  Y +L   +       +A  L++E+           NA+ +      PD 
Sbjct: 523 RTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMG----------NANCE------PDI 566

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              + + D  ++A  F+   E+   M E G+ P+   +  +
Sbjct: 567 ISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 607



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 191/448 (42%), Gaps = 49/448 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G+   V  + T++S    +G+             + R ++  D  +      +   
Sbjct: 240 MKKKGFDADVVLYGTLISGFCNNGN-------------LDRGKELFDEMLGKGISANVVT 286

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++    LG+ K+   + + M E G  PDV+TY  +I    +  R    + +L  ++
Sbjct: 287 YSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMV 346

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
           E G      T+  L++     G +  A  I++ M E  +         D+  Y++     
Sbjct: 347 EKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA-------DVVTYNTLMKGL 399

Query: 177 -NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            ++G  D+  ++F  +  N                PN   +  L+ G   EGR++  V++
Sbjct: 400 CDKGKVDEALKLFNSMFDNE-----------NCLEPNVFTFNMLIGGLCKEGRLTKAVKI 448

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               R+     S  + VTY  ++   +KAG +  A ++  ++  +G   N  TY+IL+ G
Sbjct: 449 ---HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDG 505

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+   ++ AK L  EM     + P +  YN L+           A + F EM      P
Sbjct: 506 FCKMRMLNIAKGLFCEMRTHG-LNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEP 564

Query: 356 TKISYTTL----MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
             IS+ T+    +KA       +L  K+ +  LR      D + ++ L+    ++G ++E
Sbjct: 565 DIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRP-----DALTFSTLINRLSKLGELDE 619

Query: 412 AKRIIERMKENGFYPNVATYGSLANGIS 439
           AK  +ERM  +GF P+   Y SL  G+S
Sbjct: 620 AKSALERMVASGFTPDALVYDSLLKGLS 647



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           RR       P   + + ++     A        V+  + + G   N    NI+LKG C+ 
Sbjct: 98  RRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRN 157

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             + +A  L+REM   + + PD+VSYN LI+G         A+    EM A G  P  ++
Sbjct: 158 GGVFEAMGLIREMGRKS-VSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVT 216

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
            TTLM       +   A ++ + M +      D+V +  L+ G+C  G ++  K + + M
Sbjct: 217 CTTLMDGLCKDGRMDEAMELLEAM-KKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM 275

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
              G   NV TY  L +G+    + G+    WKE         E           + PD 
Sbjct: 276 LGKGISANVVTYSCLVHGLC---RLGQ----WKEANTVLNAMAE---------HGIHPDV 319

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                L D   +      A++++  M E G  P+   Y
Sbjct: 320 VTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTY 357



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/373 (18%), Positives = 151/373 (40%), Gaps = 67/373 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+  G    V  ++T++  L    D G V E++KLF+ +      F + + +   +P+  
Sbjct: 380 MIEKGKKADVVTYNTLMKGLC---DKGKVDEALKLFNSM------FDNENCL---EPNVF 427

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            +N ++      G+  K +++  +M + G+  +++TYN+++  C +A +    + + +++
Sbjct: 428 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 487

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L++G      T+  L+  +     L IA+ +   MR                        
Sbjct: 488 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMR------------------------ 523

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                         + +NP+                Y TLM     EG +     +   M
Sbjct: 524 -------------THGLNPALFD-------------YNTLMASLCKEGSLEQAKSLFQEM 557

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                    PD +++ T++   +KAG     +++  +M  +G+  + +T++ L+    + 
Sbjct: 558 GNAN---CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKL 614

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++D+AK  L  M       PD + Y+ L+ G     D+   +   ++M A+G    +  
Sbjct: 615 GELDEAKSALERMVASG-FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKI 673

Query: 360 YTTLMKAFALSSQ 372
            +T++     S Q
Sbjct: 674 VSTILTCLCHSIQ 686



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 293 LKGYCQQ--LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           L+  CQ+   Q  +A  L    A D  + P   + N L+D      +   A + +  M  
Sbjct: 44  LRSLCQKPNSQFTEAVSLFHS-ALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTH 102

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             + P+  S + L++ FA + +P+L   V   +L+     V++   N++++G CR G V 
Sbjct: 103 VDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRG-FTVNVFIMNIVLKGLCRNGGVF 161

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           EA  +I  M      P++ +Y +L NG+  A+K  EA+ L  E++
Sbjct: 162 EAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 206


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 37/396 (9%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+ AY   G+   AE ++  + +       I     +E Y     G  ++ + +F +
Sbjct: 149 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYG--RGGKCNNAEAIFRR 206

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +       SS P        P++  Y  ++K ++   +  +   +   +  ++ +   PD
Sbjct: 207 M------QSSGPE-------PSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPD 253

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
              Y  ++    KAG+ ++AR+V + M   GVP + +TYN L+       ++ K  + ++
Sbjct: 254 QKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQ 313

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
                + I+PDVVSY +LI  +        AL+ F EM   G+ PT  +Y  L+ AFA+S
Sbjct: 314 R----SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 369

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
              + A  VF  M RD R+  D+ ++  ++  Y     +E A++  +R+K +GF PN+ T
Sbjct: 370 GMVEQAKTVFKSMRRD-RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 428

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           YG+L  G + A    + +    E+ E+  +              +K ++ +L  + D   
Sbjct: 429 YGTLIKGYAKANDVEKMM----EVYEKMRL------------SGIKANQTILTTIMDASG 472

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
           R   F  AL     ME  G+PP++ K K + + + S
Sbjct: 473 RCKNFGSALGWYKEMESCGVPPDQ-KAKNVLLSLAS 507



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 153/345 (44%), Gaps = 24/345 (6%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++ A   LG      ++   + + G+ P+V++Y  +++   R  + +    +  R+   G
Sbjct: 152 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 211

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSENEGDDD 182
                 T+Q ++  +V     + AE + + + + ++   K  +++  +  Y  +  G+ +
Sbjct: 212 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 271

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRR 241
              +VF  ++   +              P S + Y +LM    +   VS   ++   M+R
Sbjct: 272 KARKVFSSMVGKGV--------------PQSTVTYNSLMSFETSYKEVS---KIYDQMQR 314

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            +     PD V+Y  ++ A  +A   + A  V  EM   GV      YNILL  +     
Sbjct: 315 SD---IQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGM 371

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +++AK + + M  D +I PD+ SY  ++  ++   D  GA  FF  ++  G  P  ++Y 
Sbjct: 372 VEQAKTVFKSMRRD-RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYG 430

Query: 362 TLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCR 405
           TL+K +A ++  +   +V+++M L   +    I+   M   G C+
Sbjct: 431 TLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCK 475



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 119/256 (46%), Gaps = 31/256 (12%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T  YN++++   +    K+  +++DQM     +PDV++Y ++IK   RA R+   + V E
Sbjct: 289 TVTYNSLMSFETSY---KEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFE 345

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE- 176
            +L+ G+      +  L+ A+   G +E A+T+ ++MR  R     I    DL  Y++  
Sbjct: 346 EMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDR-----IFP--DLWSYTTML 398

Query: 177 ----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               N  D +  ++ F+++  +              F PN   Y TL+KGY    + +D 
Sbjct: 399 SAYVNASDMEGAEKFFKRIKVDG-------------FEPNIVTYGTLIKGY---AKANDV 442

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +M+    +   +    +    TT++ A  +  +   A     EM   GVP ++   N+L
Sbjct: 443 EKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVL 502

Query: 293 LKGYCQQLQIDKAKEL 308
           L     Q ++++AKEL
Sbjct: 503 LSLASTQDELEEAKEL 518


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 168/366 (45%), Gaps = 20/366 (5%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
            ++++ + G  PDV  +NV++    +  + +    +   I + G+   + +F +L+  Y 
Sbjct: 212 FYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYC 271

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS 199
             G+L+    + + M E R  V   +    +       EG  DD +++F ++    +   
Sbjct: 272 KSGNLDQGFRLKRFMMENR--VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL--- 326

Query: 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259
                      PN   +TTL+ G+   GR    + +   M R+      PD +TY T+++
Sbjct: 327 ----------VPNDVTFTTLINGHCVTGRADLGMEIYQQMLRK---GVKPDVITYNTLIN 373

Query: 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319
            L K G +  A++++ EMT+ G+  ++ TY +L+ G C++  ++ A E+ +EM  +  IE
Sbjct: 374 GLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG-IE 432

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
            D V++  LI GF        A     EM   GI P   +YT ++  F      K   K+
Sbjct: 433 LDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKL 492

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             EM  D  V   +V +N+L+ G C+ G ++ A  +++ M   G  P+  TY  L     
Sbjct: 493 LKEMQCDGHVP-GVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTL 551

Query: 440 LARKPG 445
            A K G
Sbjct: 552 QAWKQG 557



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 136/287 (47%), Gaps = 40/287 (13%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQE------------------------------- 243
           +++ LM  Y + G  SD ++    +R+                                 
Sbjct: 157 VFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEI 216

Query: 244 -DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D    PD   +  ++  L K   ++ A+ +  E+ + G+    +++N L+ GYC+   +
Sbjct: 217 LDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNL 276

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D+   L R M ++ ++ PDV +Y++LI+G         A   F EM  RG+ P  +++TT
Sbjct: 277 DQGFRLKRFMMEN-RVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTT 335

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+    ++ +  L  +++ +MLR   VK D++ +N L+ G C++G + EAK+++  M + 
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKG-VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQR 394

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           G  P+  TY  L +G     K G+   L   ++ R E+ KEG+  D+
Sbjct: 395 GLKPDKFTYTMLIDGCC---KEGD---LESALEIRKEMVKEGIELDN 435



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 166/425 (39%), Gaps = 82/425 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L  GY P V  ++ ++ RL         E+  LF  + KR             +P   +
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKIN--EAQLLFGEIGKR-----------GLRPTVVS 262

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           +N ++N     G   +  +L   M E    PDV TY+V+I  LC            LE +
Sbjct: 263 FNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLE-M 321

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+     TF +L+  +   G  ++   I Q M                         
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQM------------------------- 356

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                    L K   P+   Y TL+ G    G + +  +++  M
Sbjct: 357 -------------------------LRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEM 391

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            ++      PD  TYT ++    K G ++ A ++  EM + G+  + + +  L+ G+C++
Sbjct: 392 TQR---GLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCRE 448

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+ +A+  LREM  +A I+PD  +Y ++I GF    D         EM+  G  P  ++
Sbjct: 449 GQVIEAERTLREML-EAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVT 507

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+       Q K AN + D ML    V  DI  +N+L+E            R ++  
Sbjct: 508 YNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDI-TYNILLE------------RTLQAW 554

Query: 420 KENGF 424
           K+ GF
Sbjct: 555 KQGGF 559



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 115/291 (39%), Gaps = 79/291 (27%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    + TL+ GY   G +    R+    R   +N   PD  TY+ +++ L K G +D A
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRL---KRFMMENRVFPDVFTYSVLINGLCKEGQLDDA 314

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  EM   G+  N +T+  L+ G+C   + D   E+ ++M     ++PDV++YN LI+
Sbjct: 315 NKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG-VKPDVITYNTLIN 373

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G   + D   A     EM  RG+ P K +YT                             
Sbjct: 374 GLCKVGDLREAKKLVIEMTQRGLKPDKFTYT----------------------------- 404

Query: 391 VDIVAWNMLVEG-----------------------------------YCRMGLVEEAKRI 415
                  ML++G                                   +CR G V EA+R 
Sbjct: 405 -------MLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGV 465
           +  M E G  P+ ATY  + +G     K G+    +K +KE +C+    GV
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFC---KKGDVKTGFKLLKEMQCDGHVPGV 505



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 21/256 (8%)

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G   + + +++L+  Y        A +  R +     ++    S   L D  + ++ ++ 
Sbjct: 150 GTHQSNLVFSVLMNAYTDSGYFSDAIQCFR-LVRKHNLQIPFHSCGYLFDRLMKLNLTSP 208

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A  F+ E+   G  P    +  LM       +   A  +F E+ +   ++  +V++N L+
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG-LRPTVVSFNTLI 267

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            GYC+ G +++  R+   M EN  +P+V TY  L NG+    +  +A  L+ E+ +R  V
Sbjct: 268 NGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLV 327

Query: 461 KKE----------GVNADSDLP---------PPLKPDEELLDALADICVRAAFFRKALEI 501
             +           V   +DL            +KPD    + L +   +    R+A ++
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387

Query: 502 VACMEEHGIPPNKTKY 517
           V  M + G+ P+K  Y
Sbjct: 388 VIEMTQRGLKPDKFTY 403


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 199/437 (45%), Gaps = 33/437 (7%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           +G  P+    +T++  L     DG + E+++L + + K   K  D D+V         Y 
Sbjct: 62  AGCFPNSVTCTTLMDGLC---KDGRMDEAMELLEAMKK---KGFDADVV--------LYG 107

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
            +++   N G   +  +LFD+M   G   +V+TY+ ++    R  +      VL  + E 
Sbjct: 108 TLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEH 167

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           GI   + T+  L+      G    A  ++  M E   +   +   + L     E    D 
Sbjct: 168 GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVID- 226

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                F K+L   I    +  ++          Y TLMKG  ++G+V + +++  +M   
Sbjct: 227 ----AF-KILRMMIEKGKKADVVT---------YNTLMKGLCDKGKVDEALKLFNSMFDN 272

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E N   P+  T+  ++  L K G + +A ++  +M + G   N +TYN+LL G  +  +I
Sbjct: 273 E-NCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKI 331

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            +A EL +++ D   + P+  +Y+ILIDGF  +     A   F EMR  G+ P    Y T
Sbjct: 332 KEAMELWKQVLDLGFV-PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNT 390

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           LM +       + A  +F EM  +   + DI+++N +++G  + G  +  K +  +M E 
Sbjct: 391 LMASLCKEGSLEQAKSLFQEM-GNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEM 449

Query: 423 GFYPNVATYGSLANGIS 439
           G  P+  T+ +L N +S
Sbjct: 450 GLRPDALTFSTLINRLS 466



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 183/410 (44%), Gaps = 34/410 (8%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N VL      G   + + L  +M      PD+++YN +I    +A +    V +L   LE
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLL---LE 58

Query: 122 MGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           M    C     T  +L+      G ++ A  +++AM++   D   ++    +  +   N 
Sbjct: 59  MEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFC--NN 116

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G+ D   E+F+++L   I             + N   Y+ L+ G    G+  +   +L A
Sbjct: 117 GNLDRGKELFDEMLGKGI-------------SANVVTYSCLVHGLCRLGQWKEANTVLNA 163

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    ++  HPD VTYT ++  L K G    A  +L  M   G   + +TYN+LL G C+
Sbjct: 164 M---AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCK 220

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM--RARGIAPT 356
           +  +  A ++LR M +  K + DVV+YN L+ G         AL  FN M      + P 
Sbjct: 221 EGLVIDAFKILRMMIEKGK-KADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPN 279

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             ++  L+       +   A K+  +M++      ++V +NML+ G  + G ++EA  + 
Sbjct: 280 VFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG-NLVTYNMLLGGCLKAGKIKEAMELW 338

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           +++ + GF PN  TY  L +G    R    A  L+      CE++  G+N
Sbjct: 339 KQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF------CEMRTHGLN 382



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 192/445 (43%), Gaps = 43/445 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G+   V  + T++S    +G+             + R ++  D  +      +   
Sbjct: 94  MKKKGFDADVVLYGTLISGFCNNGN-------------LDRGKELFDEMLGKGISANVVT 140

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++    LG+ K+   + + M E G  PDV+TY  +I    +  R    + +L  ++
Sbjct: 141 YSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMV 200

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
           E G      T+  L++     G +  A  I++ M E  +         D+  Y++  +G 
Sbjct: 201 EKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA-------DVVTYNTLMKGL 253

Query: 180 -DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            D    DE  +  L NS+  +           PN   +  L+ G   EGR++  V++   
Sbjct: 254 CDKGKVDEALK--LFNSMFDNEN------CLEPNVFTFNMLIGGLCKEGRLTKAVKI--- 302

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            R+     S  + VTY  ++   +KAG +  A ++  ++  +G   N  TY+IL+ G+C+
Sbjct: 303 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 362

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
              ++ AK L  EM     + P +  YN L+           A + F EM      P  I
Sbjct: 363 MRMLNIAKGLFCEMRTHG-LNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDII 421

Query: 359 SYTTL----MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           S+ T+    +KA       +L  K+ +  LR      D + ++ L+    ++G ++EAK 
Sbjct: 422 SFNTMIDGTLKAGDFQFVKELQMKMVEMGLRP-----DALTFSTLINRLSKLGELDEAKS 476

Query: 415 IIERMKENGFYPNVATYGSLANGIS 439
            +ERM  +GF P+   Y SL  G+S
Sbjct: 477 ALERMVASGFTPDALVYDSLLKGLS 501



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/373 (18%), Positives = 151/373 (40%), Gaps = 67/373 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+  G    V  ++T++  L    D G V E++KLF+ +      F + + +   +P+  
Sbjct: 234 MIEKGKKADVVTYNTLMKGLC---DKGKVDEALKLFNSM------FDNENCL---EPNVF 281

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            +N ++      G+  K +++  +M + G+  +++TYN+++  C +A +    + + +++
Sbjct: 282 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 341

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L++G      T+  L+  +     L IA+ +   MR                        
Sbjct: 342 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMR------------------------ 377

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                         + +NP+                Y TLM     EG +     +   M
Sbjct: 378 -------------THGLNPALFD-------------YNTLMASLCKEGSLEQAKSLFQEM 411

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                    PD +++ T++   +KAG     +++  +M  +G+  + +T++ L+    + 
Sbjct: 412 GNAN---CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKL 468

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++D+AK  L  M       PD + Y+ L+ G     D+   +   ++M A+G    +  
Sbjct: 469 GELDEAKSALERMVASG-FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKI 527

Query: 360 YTTLMKAFALSSQ 372
            +T++     S Q
Sbjct: 528 VSTILTCLCHSIQ 540


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 176/400 (44%), Gaps = 22/400 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +Y+ V+N     G+  K   LF +M + G  PDV+TY  +I    +A        V
Sbjct: 197 PNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGV 256

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            +++++ G      T+  L+  Y+  G   E+ + + +    G +  C       L +Y 
Sbjct: 257 FQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYG--SLLNYL 314

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N G   +    F+ ++   I P                 Y  L+ GY  +G +S+   
Sbjct: 315 CKN-GRCREARFFFDSMIRKGIKPKVST-------------YGILIHGYATKGALSEMHS 360

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            L  M    +N   PDH  +    SA  K G +D+A  +  +M + G+  N + Y  L+ 
Sbjct: 361 FLDLM---VENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALID 417

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C+  ++D A+    +M ++  + P++V +N L+ G   +D    A     EM  +GI 
Sbjct: 418 ALCKLGRVDDAEVKFNQMINEG-VTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGIC 476

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  + + TL+       +     ++ D ++    V+ D  ++  L+ GYC  G  +EA++
Sbjct: 477 PNAVFFNTLICNLCNVGRVMEGRRLID-LMEHVGVRPDAFSYTPLISGYCLTGRTDEAEK 535

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           + + M   G  P   TY +L +G   A +  +A  L++E+
Sbjct: 536 VFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREM 575



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 196/486 (40%), Gaps = 73/486 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++TV+  L  +         +LFD    R        I +  KP+   
Sbjct: 225 MIDRGIPPDVVTYTTVIDGLCKA---------QLFD----RAEGVFQQMIDNGFKPNNYT 271

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++   ++GK K+ +Q+ ++M   G KPD  TY  ++    +  R     F  + ++
Sbjct: 272 YNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMI 331

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG----------------------- 157
             GI   ++T+  L+  Y   G L    + +  M E                        
Sbjct: 332 RKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMID 391

Query: 158 -RRDVCKIIRELDLE----DYSSENE-----GDDDDDDEVFEKLLPNSINPS-------- 199
              D+   +R+  L     +Y +  +     G  DD +  F +++   + P+        
Sbjct: 392 KAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLV 451

Query: 200 -----------SEP---PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
                      +E     +L +   PN+  + TL+    N GRV +  R++  M   E  
Sbjct: 452 YGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM---EHV 508

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD  +YT ++S     G  D A +V   M  IG+    +TYN LL GYC   +ID A
Sbjct: 509 GVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDA 568

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             L REM     + P VV+YN ++ G       + A   +  M   G      +Y  ++ 
Sbjct: 569 YCLFREMLRKG-VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILN 627

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
               S+    A K+F + L    ++++I+ + +++    + G  E+A  +   +  NG  
Sbjct: 628 GLCKSNCVDEAFKMF-QSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLV 686

Query: 426 PNVATY 431
           PNV TY
Sbjct: 687 PNVVTY 692



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 152/348 (43%), Gaps = 51/348 (14%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++  YT L+KG  NE R  + + +L  M         P+ V+Y+ V++     G +D+ 
Sbjct: 159 PDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKP 218

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +  EM   G+P + +TY  ++ G C+    D+A+ + ++M D+   +P+  +YN LI 
Sbjct: 219 YNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNG-FKPNNYTYNCLIH 277

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DP 387
           G++ I      +    EM ARG+ P   +Y +L+     + + + A   FD M+R    P
Sbjct: 278 GYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKP 337

Query: 388 RVKV-------------------------------DIVAWNMLVEGYCRMGLVEEAKRII 416
           +V                                 D   +N+    Y + G++++A  I 
Sbjct: 338 KVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIF 397

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
            +M+++G  PNV  YG+L + +    +  +A     E+K   ++  EGV           
Sbjct: 398 NKMRQHGLSPNVVNYGALIDALCKLGRVDDA-----EVKFN-QMINEGVT---------- 441

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
           P+  + ++L         + +A E+V  M + GI PN   +  +   +
Sbjct: 442 PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNL 489



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 130/308 (42%), Gaps = 33/308 (10%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           V     M R+  +   P+  TY+ ++    + G ++        + + G   + I  N L
Sbjct: 72  VSHFNRMVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQL 131

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---R 349
           LKG C   ++ +A ++L +   +    PD VSY IL+ G      +  AL   + M    
Sbjct: 132 LKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDH 191

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            R   P  +SY+ ++  F    Q      +F EM+ D  +  D+V +  +++G C+  L 
Sbjct: 192 GRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMI-DRGIPPDVVTYTTVIDGLCKAQLF 250

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPGEALLLWKEIKERC-EVKKEGVNA 467
           + A+ + ++M +NGF PN  TY  L +G +S+ +        WKE+ +   E+   G   
Sbjct: 251 DRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGK--------WKEVVQMLEEMSARG--- 299

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------K 518
                  LKPD     +L +   +    R+A      M   GI P  + Y         K
Sbjct: 300 -------LKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATK 352

Query: 519 KIYVEMHS 526
               EMHS
Sbjct: 353 GALSEMHS 360


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 200/471 (42%), Gaps = 71/471 (15%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           ++   KP    ++A++ A       +    L ++M   G KP++ TY + I++  RA R 
Sbjct: 221 VLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRI 280

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +++R+ + G    + T+  L+ A    G L                         
Sbjct: 281 DEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKL------------------------- 315

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                       DD  E+F K+  +S               P+   Y T++  + + G  
Sbjct: 316 ------------DDAMELFVKMKASS-------------HKPDRVTYITMLDKFSDCG-- 348

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D  R+       E +   PD +T+T +V+AL KAG++D A  +L  M + GV  N  TY
Sbjct: 349 -DLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTY 407

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L+ G  +  ++D A +L   M +   + P   +Y + ID +     S  AL  F +M+
Sbjct: 408 NTLISGLLRVNRLDDALDLFNNM-ETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMK 466

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RGIAP  ++    + + A   + + A  +F+  L+   +  D V +NM+++ Y + G V
Sbjct: 467 IRGIAPNIVACNASLYSLAEMGRLREAKVIFNR-LKSNGLAPDSVTYNMMMKCYSKAGQV 525

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +EA  ++  M EN   P++    SL N +  A +  EA   WK     C +K      D 
Sbjct: 526 DEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEA---WKMF---CRLK------DM 573

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            L P +     L+  L     +    ++A+E+ A M  +G PPN   +  I
Sbjct: 574 KLAPTVVTYNTLIAGLG----KEGQVQRAMELFASMTGNGCPPNTITFNTI 620



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/477 (22%), Positives = 197/477 (41%), Gaps = 40/477 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  S + P    + T++ + +  GD G             RV++F          PD   
Sbjct: 325 MKASSHKPDRVTYITMLDKFSDCGDLG-------------RVKEFWSEMEADGYAPDVIT 371

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  ++NA    G   +   L D M + G  P++ TYN +I    R +R    + +   + 
Sbjct: 372 FTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNME 431

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            +G+     T+   +  Y   G  + A    + M+   R +   I   +   YS    G 
Sbjct: 432 TLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMK--IRGIAPNIVACNASLYSLAEMGR 489

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   +F +L  N +             AP+S  Y  +MK Y   G+V + + +L  M 
Sbjct: 490 LREAKVIFNRLKSNGL-------------APDSVTYNMMMKCYSKAGQVDEAIELLSDM- 535

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +N   PD +   ++++ L KAG +D A ++   +  + +    +TYN L+ G  ++ 
Sbjct: 536 --SENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEG 593

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q+ +A EL   M  +    P+ +++N ++D     D+   AL    +M      P  +++
Sbjct: 594 QVQRAMELFASMTGNG-CPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTF 652

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            T++    +  +   A  +F +M +   +  D V    L+ G  + GL+E+A +I E   
Sbjct: 653 NTIIHGLVIEKRVSDAIWLFHQMKK--MLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFV 710

Query: 421 EN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
              G Y +   +  L  GI L +   E  +L+ +      V K+G    S L P +K
Sbjct: 711 HRLGVYVDRRFWEDLMGGI-LTQAGTEKTILFGDRLVCGRVCKDG----SVLMPIIK 762



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 160/382 (41%), Gaps = 55/382 (14%)

Query: 55   KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            KP   +YN ++     +   +    LF +M   G  PDV TYN+++    ++ + + L  
Sbjct: 787  KPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFE 846

Query: 115  VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            + E+++         T   ++A  V    L+                    + LDL    
Sbjct: 847  LYEQMICSSCKPNTITHNIIIANLVKSNSLD--------------------KALDL---- 882

Query: 175  SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                         F  L+    +P+      P T+ P       L+ G +  GR+ +   
Sbjct: 883  -------------FYDLVSGDFSPT------PCTYGP-------LLDGLLKSGRLEEAKE 916

Query: 235  MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            +   M    D    P++  Y  +++   K G ++ A ++   M R G+  +  +Y  L+ 
Sbjct: 917  LFEEM---VDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVG 973

Query: 295  GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
              C+  ++D A     ++     +  D ++YN++IDG         ALT ++EM++RGI 
Sbjct: 974  CLCEAGRVDDALHYFEKLKQTG-LYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGIN 1032

Query: 355  PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
            P   +Y +L+    ++   + A K+++E L+   ++ ++  +N L+ GY   G  + A  
Sbjct: 1033 PDLFTYNSLILNLGVAGMVEQAGKLYEE-LQFIGLEPNVFTYNALIRGYSMSGNSDSAYA 1091

Query: 415  IIERMKENGFYPNVATYGSLAN 436
            + +RM   G  PN  T+  L N
Sbjct: 1092 VYKRMMVGGCSPNTGTFAQLPN 1113



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 210  APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            AP+   Y  L+  +   G++++   +   M     ++  P+ +T+  +++ LVK+ S+D+
Sbjct: 822  APDVFTYNLLLDAHGKSGKINELFELYEQMIC---SSCKPNTITHNIIIANLVKSNSLDK 878

Query: 270  ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            A  +  ++          TY  LL G  +  ++++AKEL  EM D     P+   YNILI
Sbjct: 879  ALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYG-CRPNNAIYNILI 937

Query: 330  DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            +GF    D   A   F  M   GI P   SYT+L+     + +   A   F E L+   +
Sbjct: 938  NGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYF-EKLKQTGL 996

Query: 390  KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             +D +A+N++++G  R   +EEA  + + M+  G  P++ TY SL   + +A    +A  
Sbjct: 997  YLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGK 1056

Query: 450  LWKEIK 455
            L++E++
Sbjct: 1057 LYEELQ 1062



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 2/206 (0%)

Query: 249  PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
            P   TY  ++  L+K+G ++ A+++  EM   G   N   YNIL+ G+ +   ++ A EL
Sbjct: 893  PTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACEL 952

Query: 309  LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             + M  +  I PD+ SY  L+           AL +F +++  G+    I+Y  ++    
Sbjct: 953  FKRMVREG-IRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLG 1011

Query: 369  LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             S + + A  ++DEM +   +  D+  +N L+      G+VE+A ++ E ++  G  PNV
Sbjct: 1012 RSHRIEEALTLYDEM-QSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNV 1070

Query: 429  ATYGSLANGISLARKPGEALLLWKEI 454
             TY +L  G S++     A  ++K +
Sbjct: 1071 FTYNALIRGYSMSGNSDSAYAVYKRM 1096



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 105/486 (21%), Positives = 193/486 (39%), Gaps = 53/486 (10%)

Query: 8    PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
            P V  ++T+++ L   G              V+R  +       +   P+T  +N +L+ 
Sbjct: 577  PTVVTYNTLIAGLGKEGQ-------------VQRAMELFASMTGNGCPPNTITFNTILDC 623

Query: 68   CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
                 +    L++  +M      PDVLT+N +I       R    +++  ++ +M    C
Sbjct: 624  LCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDC 683

Query: 128  MTTFQSLVAAYVGFGDLE----IAETIVQAM-----REGRRDVCK-IIRELDLEDYSSEN 177
            +T   +L+   V  G +E    IAE  V  +     R    D+   I+ +   E      
Sbjct: 684  VT-LCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFG 742

Query: 178  E----GDDDDDDEVF-----------EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
            +    G    D  V            + L+  S+       L  K   P    Y  L++G
Sbjct: 743  DRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVK---PTLESYNFLIEG 799

Query: 223  YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
            ++    V +           ++    PD  TY  ++ A  K+G ++   ++  +M     
Sbjct: 800  FLG---VHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSC 856

Query: 283  PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
              N IT+NI++    +   +DKA +L  ++       P   +Y  L+DG +       A 
Sbjct: 857  KPNTITHNIIIANLVKSNSLDKALDLFYDLVS-GDFSPTPCTYGPLLDGLLKSGRLEEAK 915

Query: 343  TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
              F EM   G  P    Y  L+  F  +     A ++F  M+R+  ++ D+ ++  LV  
Sbjct: 916  ELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG-IRPDLKSYTSLVGC 974

Query: 403  YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
             C  G V++A    E++K+ G Y +   Y  + +G+  + +  EAL L+ E++ R     
Sbjct: 975  LCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSR----- 1029

Query: 463  EGVNAD 468
             G+N D
Sbjct: 1030 -GINPD 1034



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 115/293 (39%), Gaps = 21/293 (7%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           RV D V +   M+ Q       D  TY  +   L   G + +      +M   G   N  
Sbjct: 139 RVGDMVVVFNLMQNQ---IIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAY 195

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           +YN L+    Q     +A E+ R M  +  ++P + +++ L+       D+    +   E
Sbjct: 196 SYNGLIHLLLQSGLCREALEMYRRMVLEG-LKPSLKTFSALMVATGKRRDTETVKSLLEE 254

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M + G+ P   +YT  ++    + +   A ++   M  D     D+V + +L++  C  G
Sbjct: 255 MESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRM-EDDGCGPDVVTYTVLIDALCTAG 313

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            +++A  +  +MK +   P+  TY ++ +  S     G     W E++           A
Sbjct: 314 KLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEME-----------A 362

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D        PD      L +   +A    +A  ++  M + G+ PN   Y  +
Sbjct: 363 DG-----YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTL 410


>gi|308813023|ref|XP_003083818.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
 gi|116055700|emb|CAL57785.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
          Length = 725

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 166/412 (40%), Gaps = 71/412 (17%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P  + YT+L++G    GR+ +   +L   RR   +   P+  TY+T++   V+A  +  A
Sbjct: 315 PGVQAYTSLVQGLSRSGRLIEADEVL---RRMSRDGVKPNVYTYSTLIDGFVRASQIGLA 371

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQL---------QIDKAKELLREMADDAKIEPD 321
              L EM R  +  N +TYN LLKG               + +AK++   M  D  I PD
Sbjct: 372 ETALEEMRRAKIKPNVVTYNSLLKGVLSGAGGPAARTDEMLSRAKDVFERMRADG-IPPD 430

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           +VSYN LID  I     A A     E+   G+ P  ++YTTL+K           + +  
Sbjct: 431 LVSYNTLIDACINAGAPAEAWNILREISESGLRPNIVTYTTLLKYVVEVGDHSATSWIVA 490

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           E+ +D  V  D+  +N L+  Y R G +  A   +E M+     P+++TYG+L NG    
Sbjct: 491 ELEKDLTVVEDVGVYNCLINAYARQGDMARAMETMETMRAKKIAPDISTYGALTNGYVRV 550

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
               EAL L+    E C  K +G          L PD  +  +L   C        A  I
Sbjct: 551 GNVREALSLY----ESCS-KTDG----------LTPDARMRKSLVYGCGLQGMSDVADCI 595

Query: 502 VACMEEHGIP-PNKTKYKKIYVEMHSRMFTSKHASQARQDR------------------- 541
           +A ++  G+    + K  +  ++  S    +    + R  R                   
Sbjct: 596 IADLQATGVAGAREAKSLRFVLKASSEAKAAGAGGRVRAKRPPVQTRRAAAATRRARAIN 655

Query: 542 -----------------------RRERKRAAEAFKFWLGLPNSYYGSEWRLD 570
                                    E  R  E +KFWLGLPN+YY  +  +D
Sbjct: 656 AESPTVSPETFASARASRAAREAPLEWNRGLEMWKFWLGLPNNYYYGDVAID 707



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 136/331 (41%), Gaps = 47/331 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P   AY +++   +  G+  +  ++  +M   G KP+V TY+ +I    RAS+  L   
Sbjct: 314 RPGVQAYTSLVQGLSRSGRLIEADEVLRRMSRDGVKPNVYTYSTLIDGFVRASQIGLAET 373

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            LE +    I   + T+ SL+   +       A T     R                   
Sbjct: 374 ALEEMRRAKIKPNVVTYNSLLKGVLSGAGGPAARTDEMLSRA------------------ 415

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                      +VFE++  + I     PP L          Y TL+   +N G  ++   
Sbjct: 416 ----------KDVFERMRADGI-----PPDLVS--------YNTLIDACINAGAPAEAWN 452

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYNILL 293
           +L   R   ++   P+ VTYTT++  +V+ G       ++AE+ + + V  +   YN L+
Sbjct: 453 IL---REISESGLRPNIVTYTTLLKYVVEVGDHSATSWIVAELEKDLTVVEDVGVYNCLI 509

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM-RARG 352
             Y +Q  + +A E +  M    KI PD+ +Y  L +G++ + +   AL+ +    +  G
Sbjct: 510 NAYARQGDMARAMETMETMRAK-KIAPDISTYGALTNGYVRVGNVREALSLYESCSKTDG 568

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           + P      +L+    L     +A+ +  ++
Sbjct: 569 LTPDARMRKSLVYGCGLQGMSDVADCIIADL 599



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 15/161 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV----ESVKLFDVVVKRVRKFSDPDIVSDSKP 56
           M R+   P+V  +++++  +  SG  GP     E +     V +R+R    P       P
Sbjct: 378 MRRAKIKPNVVTYNSLLKGVL-SGAGGPAARTDEMLSRAKDVFERMRADGIP-------P 429

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  +YN +++AC N G P +   +  ++ E G +P+++TY  ++K            +++
Sbjct: 430 DLVSYNTLIDACINAGAPAEAWNILREISESGLRPNIVTYTTLLKYVVEVGDHSATSWIV 489

Query: 117 ERILEMGITLC--MTTFQSLVAAYVGFGDLEIAETIVQAMR 155
              LE  +T+   +  +  L+ AY   GD+  A   ++ MR
Sbjct: 490 AE-LEKDLTVVEDVGVYNCLINAYARQGDMARAMETMETMR 529



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 42/297 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVES--VKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M R G  P+V  +ST++        DG V +  + L +  ++ +R+       +  KP+ 
Sbjct: 343 MSRDGVKPNVYTYSTLI--------DGFVRASQIGLAETALEEMRR-------AKIKPNV 387

Query: 59  AAYNAVLNAC-ANLGKP--------KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
             YN++L    +  G P         +   +F++M   G  PD+++YN +I  C  A   
Sbjct: 388 VTYNSLLKGVLSGAGGPAARTDEMLSRAKDVFERMRADGIPPDLVSYNTLIDACINAGAP 447

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +L  I E G+   + T+ +L+   V  GD      IV  + E    V + +   +
Sbjct: 448 AEAWNILREISESGLRPNIVTYTTLLKYVVEVGDHSATSWIVAEL-EKDLTVVEDVGVYN 506

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
               +   +GD     E  E              +  K  AP+   Y  L  GY+  G V
Sbjct: 507 CLINAYARQGDMARAMETMET-------------MRAKKIAPDISTYGALTNGYVRVGNV 553

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            + + +  +  + +     PD     ++V      G  D A  ++A++   GV   R
Sbjct: 554 REALSLYESCSKTD--GLTPDARMRKSLVYGCGLQGMSDVADCIIADLQATGVAGAR 608


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 37/396 (9%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+ AY   G+   AE ++  + +       I     +E Y     G  ++ + +F +
Sbjct: 85  FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYG--RGGKCNNAEAIFRR 142

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +       SS P        P++  Y  ++K ++   +  +   +   +  ++ +   PD
Sbjct: 143 M------QSSGPE-------PSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPD 189

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
              Y  ++    KAG+ ++AR+V + M   GVP + +TYN L+       ++ K  + ++
Sbjct: 190 QKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQ 249

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
                + I+PDVVSY +LI  +        AL+ F EM   G+ PT  +Y  L+ AFA+S
Sbjct: 250 R----SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 305

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
              + A  VF  M RD R+  D+ ++  ++  Y     +E A++  +R+K +GF PN+ T
Sbjct: 306 GMVEQAKTVFKSMRRD-RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 364

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           YG+L  G + A    + +    E+ E+  +              +K ++ +L  + D   
Sbjct: 365 YGTLIKGYAKANDVEKMM----EVYEKMRL------------SGIKANQTILTTIMDASG 408

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
           R   F  AL     ME  G+PP++ K K + + + S
Sbjct: 409 RCKNFGSALGWYKEMESCGVPPDQ-KAKNVLLSLAS 443



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 164/398 (41%), Gaps = 58/398 (14%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++ A   LG      ++   + + G+ P+V++Y  +++   R  + +    +  R+   G
Sbjct: 88  LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 147

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD-D 182
                 T+Q ++  +V                                      EGD   
Sbjct: 148 PEPSAITYQIILKTFV--------------------------------------EGDKFK 169

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           + +EVFE LL    +P            P+ ++Y  ++  Y   G      ++  +M  +
Sbjct: 170 EAEEVFETLLDEKKSP----------LKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGK 219

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                    VTY +++S      S     ++  +M R  +  + ++Y +L+K Y +  + 
Sbjct: 220 ---GVPQSTVTYNSLMSF---ETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARRE 273

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A  +  EM  DA + P   +YNIL+D F +      A T F  MR   I P   SYTT
Sbjct: 274 EEALSVFEEML-DAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTT 332

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++ A+  +S  + A K F  +  D   + +IV +  L++GY +   VE+   + E+M+ +
Sbjct: 333 MLSAYVNASDMEGAEKFFKRIKVDG-FEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLS 391

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           G   N     ++ +     +  G AL  +KE+ E C V
Sbjct: 392 GIKANQTILTTIMDASGRCKNFGSALGWYKEM-ESCGV 428



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 119/256 (46%), Gaps = 31/256 (12%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T  YN++++   +    K+  +++DQM     +PDV++Y ++IK   RA R+   + V E
Sbjct: 225 TVTYNSLMSFETSY---KEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFE 281

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE- 176
            +L+ G+      +  L+ A+   G +E A+T+ ++MR  R     I    DL  Y++  
Sbjct: 282 EMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDR-----IFP--DLWSYTTML 334

Query: 177 ----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               N  D +  ++ F+++  +              F PN   Y TL+KGY    + +D 
Sbjct: 335 SAYVNASDMEGAEKFFKRIKVDG-------------FEPNIVTYGTLIKGY---AKANDV 378

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            +M+    +   +    +    TT++ A  +  +   A     EM   GVP ++   N+L
Sbjct: 379 EKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVL 438

Query: 293 LKGYCQQLQIDKAKEL 308
           L     Q ++++AKEL
Sbjct: 439 LSLASTQDELEEAKEL 454


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/506 (22%), Positives = 207/506 (40%), Gaps = 52/506 (10%)

Query: 34  LFDVVVKRVRKFSDPDIVSD-----SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           L D++VK   +F    +  D       P+   +  ++      G+  + L+    + EF 
Sbjct: 33  LLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFS 92

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
             PDV  +N +I    +       V + E +    +   + T+ ++++     G+LE A 
Sbjct: 93  VAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKAR 152

Query: 149 TIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK 207
            +++ M R G +    I+    L +     +GD ++  E+ + +        + P     
Sbjct: 153 ELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGM------KLAGP----- 201

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
             AP+   Y +++      GRV +   +L  M      +  PD VT+ T++    KAG +
Sbjct: 202 --APDVITYNSIIHALCVAGRVVEAAEILKTM------SCSPDLVTFNTLLDGFCKAGML 253

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
            RA +VL EM R  +  + ITY IL+ G C+  Q+  A  LL E+     I PDV++Y  
Sbjct: 254 PRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI-PDVIAYTS 312

Query: 328 LIDGFILIDDSAGALTFFNEMRARGI---------APTKISYTTLMKAFALSSQPKLANK 378
           L+DG     +   A     EM AR I          P   +Y  ++           A  
Sbjct: 313 LVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVS 372

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +  +++    V  D+V +N L++G C+   V EA  + + M   G +PN  T GS+  G+
Sbjct: 373 LISDLVARGYVP-DVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGL 431

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
               +  +A   W  + E    +               P+  +  +L D   ++     A
Sbjct: 432 CRVGRVDDA---WSLVVEMSRKRH-------------APNVVVYTSLIDGLCKSDRMDDA 475

Query: 499 LEIVACMEEHGIPPNKTKYKKIYVEM 524
             ++  M   G+  +   Y+K+ V M
Sbjct: 476 CVVLDAMRGQGVALDDFAYRKLIVSM 501



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 201/452 (44%), Gaps = 69/452 (15%)

Query: 73  KPKKFLQLFDQMHEF-GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           +P   +Q FD   E  G K DV +YN ++ +  ++  +     V + +L  G +  + TF
Sbjct: 6   RPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTF 65

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
           + L+      G         QA R       + +R LD                      
Sbjct: 66  KILIRGNCKAG---------QATR-----ALEFLRALD---------------------- 89

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
                    E  + P  +     I+  L+ G   +G     V++   M   E +  +PD 
Sbjct: 90  ---------EFSVAPDVY-----IFNFLIHGLFKDGNPDQAVKLFENM---ESSRVNPDI 132

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA--NRITYNILLK-GYCQQLQIDKAKEL 308
            TY TV+S L K+G++++AR++L EM R G  +  + +TYN L+  G C+   +++A E+
Sbjct: 133 FTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEI 192

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L  M   A   PDV++YN +I    +      A      M     +P  +++ TL+  F 
Sbjct: 193 LDGMK-LAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSC---SPDLVTFNTLLDGFC 248

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +     A +V +EM R+  +  D++ + +LV G CR+G V+ A  ++E +   G+ P+V
Sbjct: 249 KAGMLPRALEVLEEMCRE-NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDV 307

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
             Y SL +G+  + +  EA  L KE+  R E+  E V+   ++ PPL     +L  L   
Sbjct: 308 IAYTSLVDGLCKSGEIEEAHKLVKEMSAR-EILAEMVSI--NMVPPLFTYNIVLGGL--- 361

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            ++     KA+ +++ +   G  P+   Y  +
Sbjct: 362 -IKDGSISKAVSLISDLVARGYVPDVVTYNTL 392



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 156/384 (40%), Gaps = 61/384 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P V  +++++  L  +G                RV + ++        PD   
Sbjct: 196 MKLAGPAPDVITYNSIIHALCVAG----------------RVVEAAEILKTMSCSPDLVT 239

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N +L+     G   + L++ ++M      PDV+TY +++    R  +  +  ++LE I+
Sbjct: 240 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    +  + SLV      G++E A  +V+ M                          
Sbjct: 300 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSA------------------------ 335

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                    ++L   ++ +  PPL           Y  ++ G + +G +S  V ++  + 
Sbjct: 336 --------REILAEMVSINMVPPLFT---------YNIVLGGLIKDGSISKAVSLISDLV 378

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD VTY T++  L KA  +  A  +  EM  +G   N +T   ++ G C+  
Sbjct: 379 AR---GYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVG 435

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D A  L+ EM+   +  P+VV Y  LIDG    D    A    + MR +G+A    +Y
Sbjct: 436 RVDDAWSLVVEMSR-KRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAY 494

Query: 361 TTLMKAFALSSQPKLANKVFDEML 384
             L+ +     +   A  ++DEM+
Sbjct: 495 RKLIVSMIHGGRVAEAMAMYDEMV 518


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/526 (22%), Positives = 227/526 (43%), Gaps = 52/526 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+   +S ++S   +SG+             V+   K+    +  +   + A Y+++
Sbjct: 188 GIFPNAATFSAIISGYGSSGN-------------VEAAEKWFQRSVSENWNHNVAIYSSI 234

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI---LE 121
           ++A    G  ++   L   M E G +  +  YN+++   AR   +   + V  ++   ++
Sbjct: 235 IHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARID 294

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G++    T+  L+  Y   G +  A    + M+     + +    + ++ Y     GD 
Sbjct: 295 TGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYV--QLGDF 352

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
            +   VFE +    I P             +   Y  L+K +    +++  +++LG M+ 
Sbjct: 353 ANAFSVFEDMSEAGIEP-------------DWVTYNILLKAFCKSRQMTRAIQLLGRMKT 399

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +      P   TY T++   +K G +  A + ++EM   G   N  TYN+++    Q  Q
Sbjct: 400 R---GCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQ 456

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ID+A  ++ EM + A ++P+  SY  L+ GF  I +   A      +      P  ISY 
Sbjct: 457 IDRAASVIDEM-ELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYA 515

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +L+KA   + + + A  V +EM     V ++   +N L++G+ + G + EA  I+++M++
Sbjct: 516 SLLKACCKAGRMQNAIAVTEEMAF-AGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQ 574

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            GF P++ +Y S  N    A    +A    +E+K++            DL P L+    L
Sbjct: 575 EGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQ------------DLQPNLQTYTIL 622

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           +     +    +   KAL     M+  G+ P+K  Y  I   + S+
Sbjct: 623 IHGWTSV----SHPEKALICYDEMKAAGLIPDKPLYYCIVTSLLSK 664



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 19/257 (7%)

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R+V+    RI     R  Y +L+  Y ++     A+    +M   A I+  V +YN LI 
Sbjct: 109 RKVVNAFKRIDKAVER-DYALLIHYYGKRGDKRGARVTFEKM-RAAGIDSSVHAYNNLIR 166

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            +I+  +  GA++   EM   GI P   +++ ++  +  S   + A K F   + +    
Sbjct: 167 AYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSVSE-NWN 225

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++  ++ ++  YC+ G +E A+ ++  M+E G    +  Y  L +G +      + L +
Sbjct: 226 HNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNV 285

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           + ++K R             +   L P       L ++  +     KALE    M+  GI
Sbjct: 286 FHKLKAR-------------IDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGI 332

Query: 511 PPNKTKYKKI---YVEM 524
             N+  Y  +   YV++
Sbjct: 333 TLNRNTYSMLVDGYVQL 349



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 131/314 (41%), Gaps = 45/314 (14%)

Query: 12  AWSTVVS-RLAASGDDGPVESVKLFDVV----VKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           A+ TV   +LA    +    +V + ++V    + R     D   ++  +P+  +Y  ++ 
Sbjct: 425 AYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQ 484

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
             A++G+     +   +++E   KP +++Y  ++K C +A R    + V E +   G+ +
Sbjct: 485 GFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPM 544

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSS-----ENEGD 180
               F +L+  +   GD+  A  I+Q MR EG           D+  Y+S        GD
Sbjct: 545 NNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTP--------DIHSYTSFVNACCKAGD 596

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                E  E++    +              PN + YT L+ G+ +   VS   + L    
Sbjct: 597 MQKATETIEEMKQQDLQ-------------PNLQTYTILIHGWTS---VSHPEKALICYD 640

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             +     PD   Y  +V++L+   ++ R      E  R GV   ++T  ++ +G C  +
Sbjct: 641 EMKAAGLIPDKPLYYCIVTSLLSKAAIAR------ETVRNGVL--QVTSEMVDQGMC--I 690

Query: 301 QIDKAKELLREMAD 314
            +  AK+  R + +
Sbjct: 691 DLATAKQWQRSLMN 704


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 147/317 (46%), Gaps = 23/317 (7%)

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
           E PLL    APN   YT LM GY   G+      +   MRR       P+  TY  ++  
Sbjct: 63  EMPLLG--LAPNEVTYTALMHGYFTHGQREKGFALFEEMRR---GGVEPNLYTYNCLIGE 117

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
             + G  +RAR +  EM   G+  N ++YN L+ G C+  ++  A +LL +M       P
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLL-DMMRTEGTRP 176

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            ++++N+L+DG+      + AL FFN+M+A G  P+ ++Y  L+  F  +     AN+  
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRAL 236

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            +M ++  ++   V + +L++ + R   + +A  I+  M++ G   +  TYG L   + +
Sbjct: 237 SDM-KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
                +A  L++ + E+                 ++P   + D +     R     KAL+
Sbjct: 296 EGNMKDARKLFQSMGEK----------------GVEPSNVIYDMMIYGYGREGSSYKALK 339

Query: 501 IVACMEEHGIPPNKTKY 517
           ++  M + G+ PN   Y
Sbjct: 340 LIMEMRQKGLIPNSASY 356



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 128/291 (43%), Gaps = 20/291 (6%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G V   + ML    +  D A   D    T +V+   K G +  AR+V  EM  +G+  N 
Sbjct: 16  GDVRSALAMLARGTKSGDAA--LDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNE 73

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +TY  L+ GY    Q +K   L  EM     +EP++ +YN LI  +    +   A + F+
Sbjct: 74  VTYTALMHGYFTHGQREKGFALFEEMRRGG-VEPNLYTYNCLIGEWCRTGEFERARSLFD 132

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  RGI    +SY TL+       +   A K+ D M+R    +  I+ +N+LV+GY + 
Sbjct: 133 EMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLD-MMRTEGTRPSIITFNLLVDGYGKA 191

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G +  A     +MK  GF P+  TY  L  G   AR    A     ++KER         
Sbjct: 192 GKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKER--------- 242

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                   L+P +     L D   R     KA EI+A ME+ G+  +   Y
Sbjct: 243 -------GLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTY 286



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 170/423 (40%), Gaps = 70/423 (16%)

Query: 13  WSTV---VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACA 69
           W T    V RL A+GD      V+    ++ R  K  D  +      D  A  A++N C 
Sbjct: 2   WGTTAAAVRRLCAAGD------VRSALAMLARGTKSGDAAL------DVTACTALVNGCC 49

Query: 70  NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT 129
             G   +  ++FD+M   G  P+ +                                   
Sbjct: 50  KGGDVAEARRVFDEMPLLGLAPNEV----------------------------------- 74

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFE 189
           T+ +L+  Y   G  E    + + MR G  +         + ++    E         FE
Sbjct: 75  TYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGE---------FE 125

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           +    + +   E P+  +    N   Y TL+ G    G++ D  ++L  MR +    + P
Sbjct: 126 R----ARSLFDEMPV--RGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTE---GTRP 176

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
             +T+  +V    KAG M  A     +M   G   + +TYN+L+ G+C+   + +A   L
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRAL 236

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M +   +EP  V+Y ILID F   +    A      M   G+     +Y  L++A  +
Sbjct: 237 SDMKERG-LEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
               K A K+F  M  +  V+   V ++M++ GY R G   +A ++I  M++ G  PN A
Sbjct: 296 EGNMKDARKLFQSM-GEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSA 354

Query: 430 TYG 432
           +YG
Sbjct: 355 SYG 357



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 25/331 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y A+++     G+ +K   LF++M   G +P++ TYN +I    R         +
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYS 174
            + +   GI   + ++ +L+A     G L  A  ++  MR EG R    I   L ++ Y 
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSI-ITFNLLVDGYG 189

Query: 175 SENEGDDDDDDEVFEKLLP--NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              +             LP  N +  +         F P++  Y  L+ G+    R  D 
Sbjct: 190 KAGK---------MSNALPFFNQMKAAG--------FQPSAVTYNMLIAGFC---RARDM 229

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            R   A+   ++    P  VTYT ++ +  +   M +A ++LA M + G+  +  TY +L
Sbjct: 230 TRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVL 289

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           ++  C +  +  A++L + M +   +EP  V Y+++I G+     S  AL    EMR +G
Sbjct: 290 VRALCMEGNMKDARKLFQSMGEKG-VEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           + P   SY   ++      + + A  + D+M
Sbjct: 349 LIPNSASYGLTIRVLCKDDKCQEAEALLDDM 379



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P++  ++ ++     +G+              +R R   D   V     +  +
Sbjct: 99  MRRGGVEPNLYTYNCLIGEWCRTGE-------------FERARSLFDEMPVRGIVRNVVS 145

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++      GK     +L D M   G +P ++T+N+++    +A +    +    ++ 
Sbjct: 146 YNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMK 205

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G      T+  L+A +    D+  A   +  M+E   +  K+   + ++ ++ EN   
Sbjct: 206 AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH-- 263

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                + FE L            +       ++  Y  L++    EG + D  ++  +M 
Sbjct: 264 ---MGKAFEIL----------AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSM- 309

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    P +V Y  ++    + GS  +A +++ EM + G+  N  +Y + ++  C+  
Sbjct: 310 --GEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDD 367

Query: 301 QIDKAKELLREM 312
           +  +A+ LL +M
Sbjct: 368 KCQEAEALLDDM 379


>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Glycine max]
          Length = 461

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 127/268 (47%), Gaps = 21/268 (7%)

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           VS+L KA  +  A   + +  R+GV  + +TYN L+  YC+   +D A  +L  M  DA 
Sbjct: 20  VSSLCKAKQIPNAETAIVDGIRLGVLPDVVTYNTLIDAYCRFATLDVAYSVLARM-HDAG 78

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I PDVVS+N LI G +     + +L  F+EM  RGI P   S+  LM       +P  AN
Sbjct: 79  IPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNCLFQLGKPDEAN 138

Query: 378 KVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
           +VF E+ LRD   +V    +N+++ G C+ G V  A  +   ++ +GF P V TY +L N
Sbjct: 139 RVFKEIVLRD---EVHPATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALIN 195

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+  AR+  +A  + KE  E                   +P+      +   C R   F 
Sbjct: 196 GLCKARRLKDARRVLKEFGETGN----------------EPNAVTYTTVMTCCFRCRLFE 239

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEM 524
           + LEI++ M   G   +   Y  +   M
Sbjct: 240 EGLEILSEMRSLGFTFDGFAYCTVIAAM 267



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 153/355 (43%), Gaps = 56/355 (15%)

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
            G  PDV+TYN +I    R +   +   VL R+ + GI   + +F +L++  V       
Sbjct: 42  LGVLPDVVTYNTLIDAYCRFATLDVAYSVLARMHDAGIPPDVVSFNTLISGAV------- 94

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
                      R+ +    + LDL                 F+++L   INP +      
Sbjct: 95  -----------RKSL--FSKSLDL-----------------FDEMLKRGINPDAWS---- 120

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
                    +  LM      G+  +  R+   +  +++   HP   TY  +++ L K G 
Sbjct: 121 ---------HNILMNCLFQLGKPDEANRVFKEIVLRDE--VHP--ATYNIMINGLCKNGY 167

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A  +   + R G     +TYN L+ G C+  ++  A+ +L+E  +    EP+ V+Y 
Sbjct: 168 VGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEFGETGN-EPNAVTYT 226

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            ++            L   +EMR+ G      +Y T++ A   + + + A ++  EM+  
Sbjct: 227 TVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIV-EMMVS 285

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
             V+ D+V++N L+  YCR G +++A R+++ ++  G   +  T+  + +G+  A
Sbjct: 286 SGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKA 340



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 115/258 (44%), Gaps = 12/258 (4%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   + TL+ G + +   S ++ +   M ++  N   PD  ++  +++ L + G  D A
Sbjct: 81  PDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRGIN---PDAWSHNILMNCLFQLGKPDEA 137

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +V  E+  +    +  TYNI++ G C+   +  A  L R +     + P V++YN LI+
Sbjct: 138 NRVFKEIV-LRDEVHPATYNIMINGLCKNGYVGNALSLFRNLQRHGFV-PQVLTYNALIN 195

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A     E    G  P  ++YTT+M         +   ++  EM R     
Sbjct: 196 GLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEM-RSLGFT 254

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D  A+  ++    + G ++EA+ I+E M  +G  P++ +Y +L N      +  +AL L
Sbjct: 255 FDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRL 314

Query: 451 WKEIKERCEVKKEGVNAD 468
             EI      + EG+  D
Sbjct: 315 LDEI------EGEGLECD 326



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 9/195 (4%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  YTT+M          + + +L  MR         D   Y TV++A++K G M  A
Sbjct: 220 PNAVTYTTVMTCCFRCRLFEEGLEILSEMRSL---GFTFDGFAYCTVIAAMIKTGRMQEA 276

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++  M   GV  + ++YN L+  YC+Q ++D A  LL E+  +  +E D  ++ I++D
Sbjct: 277 EEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEG-LECDQYTHTIIVD 335

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     +  GA    N M + G     +++   +     +     A ++F+ M     VK
Sbjct: 336 GLCKAGNFDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVM----EVK 391

Query: 391 VDIVAWNMLVEGYCR 405
            D   + ++V   CR
Sbjct: 392 -DSFTYTIVVHNLCR 405



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 136/355 (38%), Gaps = 53/355 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR---------------VRKF 45
           M  +G  P V +++T++S   A       +S+ LFD ++KR               + + 
Sbjct: 74  MHDAGIPPDVVSFNTLIS--GAVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNCLFQL 131

Query: 46  SDPD--------IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
             PD        IV   +   A YN ++N     G     L LF  +   G  P VLTYN
Sbjct: 132 GKPDEANRVFKEIVLRDEVHPATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYN 191

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            +I    +A R      VL+   E G      T+ +++         E    I+  MR  
Sbjct: 192 ALINGLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSL 251

Query: 158 RRDV-----CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212
                    C +I  +          G   + +E+ E ++ + + P              
Sbjct: 252 GFTFDGFAYCTVIAAMI-------KTGRMQEAEEIVEMMVSSGVRPDLVS---------- 294

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y TL+  Y  +GR+ D +R+L  +   E      D  T+T +V  L KAG+ D A++
Sbjct: 295 ---YNTLINLYCRQGRLDDALRLLDEI---EGEGLECDQYTHTIIVDGLCKAGNFDGAQR 348

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
            L  M  +G  +N + +N  L G  +   ID A  L   M         +V +N+
Sbjct: 349 HLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVKDSFTYTIVVHNL 403


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 147/317 (46%), Gaps = 23/317 (7%)

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
           E PLL    APN   YT LM GY   G+      +   MRR       P+  TY  ++  
Sbjct: 63  EMPLLG--LAPNEVTYTALMHGYFTHGQREKGFALFEEMRR---GGVEPNLYTYNCLIGE 117

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
             + G  +RAR +  EM   G+  N ++YN L+ G C+  ++  A +LL  M  +    P
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEG-TRP 176

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            ++++N+L+DG+      + AL FFN+M+A G  P+ ++Y  L+  F  +     AN+  
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRAL 236

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            +M ++  ++   V + +L++ + R   + +A  I+  M++ G   +  TYG L   + +
Sbjct: 237 SDM-KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
                +A  L++ + E+                 ++P   + D +     R     KAL+
Sbjct: 296 EGNMKDARKLFQSMGEK----------------GVEPSNVIYDMMIYGYGREGSSYKALK 339

Query: 501 IVACMEEHGIPPNKTKY 517
           ++  M + G+ PN   Y
Sbjct: 340 LIMEMRQKGLIPNSASY 356



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 128/291 (43%), Gaps = 20/291 (6%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G V   + ML    +  D A   D    T +V+   K G +  AR+V  EM  +G+  N 
Sbjct: 16  GDVRSALAMLARGTKSGDAA--LDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNE 73

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +TY  L+ GY    Q +K   L  EM     +EP++ +YN LI  +    +   A + F+
Sbjct: 74  VTYTALMHGYFTHGQREKGFALFEEMRRGG-VEPNLYTYNCLIGEWCRTGEFERARSLFD 132

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  RGI    +SY TL+       +   A K+ D M+R    +  I+ +N+LV+GY + 
Sbjct: 133 EMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLD-MMRTEGTRPSIITFNLLVDGYGKA 191

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G +  A     +MK  GF P+  TY  L  G   AR    A     ++KER         
Sbjct: 192 GKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKER--------- 242

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                   L+P +     L D   R     KA EI+A ME+ G+  +   Y
Sbjct: 243 -------GLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTY 286



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 170/423 (40%), Gaps = 70/423 (16%)

Query: 13  WSTV---VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACA 69
           W T    V RL A+GD      V+    ++ R  K  D  +      D  A  A++N C 
Sbjct: 2   WGTTAAAVRRLCAAGD------VRSALAMLARGTKSGDAAL------DVTACTALVNGCC 49

Query: 70  NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT 129
             G   +  ++FD+M   G  P+ +                                   
Sbjct: 50  KGGDVAEARRVFDEMPLLGLAPNEV----------------------------------- 74

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFE 189
           T+ +L+  Y   G  E    + + MR G  +         + ++    E         FE
Sbjct: 75  TYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGE---------FE 125

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           +    + +   E P+  +    N   Y TL+ G    G++ D  ++L  MR +    + P
Sbjct: 126 R----ARSLFDEMPV--RGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTE---GTRP 176

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
             +T+  +V    KAG M  A     +M   G   + +TYN+L+ G+C+   + +A   L
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRAL 236

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M +   +EP  V+Y ILID F   +    A      M   G+     +Y  L++A  +
Sbjct: 237 SDMKERG-LEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
               K A K+F  M  +  V+   V ++M++ GY R G   +A ++I  M++ G  PN A
Sbjct: 296 EGNMKDARKLFQSM-GEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSA 354

Query: 430 TYG 432
           +YG
Sbjct: 355 SYG 357



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 25/331 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y A+++     G+ +K   LF++M   G +P++ TYN +I    R         +
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYS 174
            + +   GI   + ++ +L+A     G L  A  ++  MR EG R    I   L ++ Y 
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSI-ITFNLLVDGYG 189

Query: 175 SENEGDDDDDDEVFEKLLP--NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              +             LP  N +  +         F P++  Y  L+ G+    R  D 
Sbjct: 190 KAGK---------MSNALPFFNQMKAAG--------FQPSAVTYNMLIAGFC---RARDM 229

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            R   A+   ++    P  VTYT ++ +  +   M +A ++LA M + G+  +  TY +L
Sbjct: 230 TRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVL 289

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           ++  C +  +  A++L + M +   +EP  V Y+++I G+     S  AL    EMR +G
Sbjct: 290 VRALCMEGNMKDARKLFQSMGEKG-VEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           + P   SY   ++      + + A  + D+M
Sbjct: 349 LIPNSASYGLTIRVLCKDDKCQEAEALLDDM 379



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P++  ++ ++     +G+              +R R   D   V     +  +
Sbjct: 99  MRRGGVEPNLYTYNCLIGEWCRTGE-------------FERARSLFDEMPVRGIVRNVVS 145

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++      GK     +L D M   G +P ++T+N+++    +A +    +    ++ 
Sbjct: 146 YNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMK 205

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G      T+  L+A +    D+  A   +  M+E   +  K+   + ++ ++ EN   
Sbjct: 206 AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH-- 263

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                + FE L            +       ++  Y  L++    EG + D  ++  +M 
Sbjct: 264 ---MGKAFEIL----------AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSM- 309

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    P +V Y  ++    + GS  +A +++ EM + G+  N  +Y + ++  C+  
Sbjct: 310 --GEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDD 367

Query: 301 QIDKAKELLREM 312
           +  +A+ LL +M
Sbjct: 368 KCQEAEALLDDM 379


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 203/465 (43%), Gaps = 52/465 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   +   + A    G   + +QL D+M ++G  PDV+ Y+ ++   +   R    + +
Sbjct: 245 PNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIEL 304

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +L    T+C        AA  G    +  E + Q + E  R  C +  E      +S
Sbjct: 305 LNGMLCKPNTICYN------AALKGLCIAQRWEDVGQLIVEMVRKDC-LPNEATFSMLTS 357

Query: 176 --ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                G  D   EV E++                   P++ IY TL+  +  +GRV D +
Sbjct: 358 CLCQNGLVDCAMEVLEQMHKYGCR-------------PDAVIYNTLIYSFSEQGRVDDAL 404

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           ++L +M         PD +++   +  L +A   D A +++ +M R   P   +T+NIL+
Sbjct: 405 KLLNSM------PCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILI 458

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              CQ  +++ A E+  +M       PD+V+Y+ LI+G         A+  F  M  +  
Sbjct: 459 DSLCQNGRVNNAIEVFEQMPKYG-CTPDIVTYSSLINGLSEQGLVESAIELFQSMPCK-- 515

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P    Y  ++K    +++ + A ++   M R      + + +N+L+   C+ GLV+ A 
Sbjct: 516 -PDIFGYNAVLKGLCRAARWEDAGELISNMARKD-CPPNEITFNILINSLCQKGLVDRAI 573

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
            + E+M + G  P++ TY +L NG S   +  +A  L   +      K + V+ +S    
Sbjct: 574 EVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMS----CKPDAVSYNS---- 625

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                     AL  +C RA  +++A E+VA M     PPN+  +K
Sbjct: 626 ----------ALKGLC-RAERWKEAEEVVAEMLRMKCPPNEVTFK 659



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 11/239 (4%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N   YTTL+ GY   GR++D + ++ +M         PD  TY TV+  L  A   + A 
Sbjct: 179 NVVTYTTLINGYCRSGRLADALALIASM------PVAPDTYTYNTVLMGLCGARQWEDAE 232

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            ++AEM R   P N +T+   ++ +CQ   +D+A +LL  M       PDVV Y+ L++G
Sbjct: 233 ALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYG-CTPDVVIYSTLVNG 291

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F        A+   N M  +   P  I Y   +K   ++ + +   ++  EM+R   +  
Sbjct: 292 FSEQGRVDDAIELLNGMLCK---PNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPN 348

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           +   ++ML    C+ GLV+ A  ++E+M + G  P+   Y +L    S   +  +AL L
Sbjct: 349 E-ATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 170/429 (39%), Gaps = 97/429 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M + G  P V  +ST+V+  +  G  DD    +++L + ++               KP+T
Sbjct: 273 MPQYGCTPDVVIYSTLVNGFSEQGRVDD----AIELLNGML--------------CKPNT 314

Query: 59  AAYNAVLNA------------------------------------CANLGKPKKFLQLFD 82
             YNA L                                      C N G     +++ +
Sbjct: 315 ICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQN-GLVDCAMEVLE 373

Query: 83  QMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG 142
           QMH++G +PD + YN +I   +   R    + +L  +       C     S  AA  G  
Sbjct: 374 QMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSM------PCSPDVISFNAALKGLC 427

Query: 143 DLE----IAETIVQAMREGRRDVCKIIR-ELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
             E      E IVQ +RE     C +I    ++   S    G  ++  EVFE+       
Sbjct: 428 RAERWDDAEELIVQMLRED----CPLIEMTFNILIDSLCQNGRVNNAIEVFEQ------- 476

Query: 198 PSSEPPLLPK-TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                  +PK    P+   Y++L+ G   +G V   + +  +M         PD   Y  
Sbjct: 477 -------MPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSM------PCKPDIFGYNA 523

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           V+  L +A   + A ++++ M R   P N IT+NIL+   CQ+  +D+A E+  +M    
Sbjct: 524 VLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYG 583

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
              PD+ +YN LI+GF        A    + M  +   P  +SY + +K    + + K A
Sbjct: 584 ST-PDIFTYNALINGFSEQGRLDDARRLLSTMSCK---PDAVSYNSALKGLCRAERWKEA 639

Query: 377 NKVFDEMLR 385
            +V  EMLR
Sbjct: 640 EEVVAEMLR 648



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 47/370 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDV---VVKRVRKFSDPDIVSDSKPD 57
           M+R   LP+   +S + S L  +G         L D    V++++ K+         +PD
Sbjct: 340 MVRKDCLPNEATFSMLTSCLCQNG---------LVDCAMEVLEQMHKYG-------CRPD 383

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
              YN ++ + +  G+    L+L + M      PDV+++N  +K   RA R      ++ 
Sbjct: 384 AVIYNTLIYSFSEQGRVDDALKLLNSMP---CSPDVISFNAALKGLCRAERWDDAEELIV 440

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           ++L     L   TF  L+ +    G +  A  + + M        K     D+  YSS  
Sbjct: 441 QMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMP-------KYGCTPDIVTYSSLI 493

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G  +      + L+ ++I      P  P  F      Y  ++KG     R  D   ++ 
Sbjct: 494 NGLSE------QGLVESAIELFQSMPCKPDIFG-----YNAVLKGLCRAARWEDAGELIS 542

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M R++     P+ +T+  ++++L + G +DRA +V  +M + G   +  TYN L+ G+ 
Sbjct: 543 NMARKD---CPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFS 599

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +Q ++D A+ LL  M+     +PD VSYN  + G    +    A     EM      P +
Sbjct: 600 EQGRLDDARRLLSTMS----CKPDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNE 655

Query: 358 ISYTTLMKAF 367
           +++    + F
Sbjct: 656 VTFKYANRLF 665



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 36/185 (19%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEP-------------------------- 320
           +  NIL+K  C Q ++  A+ +L  +      +P                          
Sbjct: 113 VACNILIKKLCAQRRLADAERVLDALKAAGAADPVSHNTLVAGYCRDGRLADAERLLAAA 172

Query: 321 ------DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
                 +VV+Y  LI+G+      A AL     M    +AP   +Y T++     + Q +
Sbjct: 173 GLSGAANVVTYTTLINGYCRSGRLADALALIASM---PVAPDTYTYNTVLMGLCGARQWE 229

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A  +  EM+R+     + V +   +  +C+ GL++ A ++++RM + G  P+V  Y +L
Sbjct: 230 DAEALMAEMVRN-HCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTL 288

Query: 435 ANGIS 439
            NG S
Sbjct: 289 VNGFS 293


>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
 gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 574

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 200/455 (43%), Gaps = 64/455 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +  +G+ P + +++T+++ +      G + S+      V  V +       S +K D+  
Sbjct: 71  LAETGHRPSLISYTTLLAAMTVQKQYGSISSI------VSEVEQ-------SGTKLDSIF 117

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NAV+NA +  G  +  +Q   +M E G  P   TYN +IK    A +      +L+ +L
Sbjct: 118 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLML 177

Query: 121 EMG---ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           E G   +   + TF  LV A+     +E A  +V+ M E       +        Y  + 
Sbjct: 178 EEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKG 237

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           E     + EV EK+            ++ +   PN R    ++ GY  EGRV D +R + 
Sbjct: 238 E-TVRAESEVVEKM------------VMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVR 284

Query: 238 AMRRQEDNAS--------------------------------HPDHVTYTTVVSALVKAG 265
            M+     A+                                  D +TY+TV++A   AG
Sbjct: 285 RMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAG 344

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            M++A QV  EM + GV  +   Y+IL KGY +  +  KA+ELL  +  +++  P+VV +
Sbjct: 345 YMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLIVESR--PNVVIF 402

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             +I G+        A+  FN+M   G++P   ++ TLM  +    QP  A +V  +M+R
Sbjct: 403 TTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVL-QMMR 461

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              VK +   + +L E +   GL +E+ + I  +K
Sbjct: 462 GCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 186/431 (43%), Gaps = 75/431 (17%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++N     G+P +   +F  + E G +P +++Y  ++       +   +  ++  + + G
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE----- 178
             L    F +++ A+   G++E A   VQA+ +        ++EL L   +S        
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDA---VQALLK--------MKELGLNPTTSTYNTLIKG 159

Query: 179 ----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  +   E+ + +L                  PN R +  L++ +  + +V +   
Sbjct: 160 YGIAGKPERSSELLDLMLEEG----------NVDVGPNIRTFNVLVQAWCKKKKVEEAWE 209

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE---MTRIGVPANRITYNI 291
           ++   ++ E+    PD VTY T+ +  V+ G   RA   + E   M     P  R T  I
Sbjct: 210 VV---KKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGR-TCGI 265

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD-------------- 337
           ++ GYC++ ++      +R M  + ++E ++V +N LI+GF+ + D              
Sbjct: 266 VVGGYCREGRVRDGLRFVRRM-KEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKEC 324

Query: 338 -----------------SAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
                            SAG    A   F EM   G+ P   +Y+ L K +  + +PK A
Sbjct: 325 NVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKA 384

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            ++ + ++ + R   ++V +  ++ G+C  G +++A R+  +M + G  PN+ T+ +L  
Sbjct: 385 EELLETLIVESRP--NVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMW 442

Query: 437 GISLARKPGEA 447
           G    ++P +A
Sbjct: 443 GYLEVKQPWKA 453



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 34/311 (10%)

Query: 216 YTTLMKGYMNE---GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           YTTL+     +   G +S  V  +      E + +  D + +  V++A  ++G+M+ A Q
Sbjct: 83  YTTLLAAMTVQKQYGSISSIVSEV------EQSGTKLDSIFFNAVINAFSESGNMEDAVQ 136

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE--PDVVSYNILID 330
            L +M  +G+     TYN L+KGY    + +++ ELL  M ++  ++  P++ ++N+L+ 
Sbjct: 137 ALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQ 196

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA-NKVFDEMLRDPRV 389
            +        A     +M   G+ P  ++Y T+   +    +   A ++V ++M+   + 
Sbjct: 197 AWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKA 256

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPG--E 446
           K +     ++V GYCR G V +  R + RMKE     N+  + SL NG + +  + G  E
Sbjct: 257 KPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDE 316

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
            L L KE    C VK + +   +           +++A +     A +  KA ++   M 
Sbjct: 317 VLTLMKE----CNVKADVITYST-----------VMNAWSS----AGYMEKAAQVFKEMV 357

Query: 507 EHGIPPNKTKY 517
           + G+ P+   Y
Sbjct: 358 KAGVKPDAHAY 368



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 14/180 (7%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A T F  +   G  P+ ISYTTL+ A  +  Q    + +  E +     K+D + +N ++
Sbjct: 64  AQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSE-VEQSGTKLDSIFFNAVI 122

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             +   G +E+A + + +MKE G  P  +TY +L  G  +A KP  +        E  ++
Sbjct: 123 NAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERS-------SELLDL 175

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             E  N D      + P+    + L     +     +A E+V  MEE G+ P+   Y  I
Sbjct: 176 MLEEGNVD------VGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTI 229


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 194/458 (42%), Gaps = 34/458 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP +   ++++  L    +    ES+         V+K  D  I     PD   
Sbjct: 74  MMEQGVLPKILICNSIIKELCKMKEMDKAESI---------VQKMVDSGIA----PDLFT 120

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++         K  ++ +QM E G +P+ +TYN +I   + +   +  V V +++ 
Sbjct: 121 YSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMS 180

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENE 178
             G+   +    S + A    G    A+ I  +M  +  + D+  I     L  Y++  +
Sbjct: 181 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDI--ISYSTMLHGYATATD 238

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
               D   +F  +L   I             APN  ++  L+  Y   G +   + +   
Sbjct: 239 SCLADVHNIFNLMLTKGI-------------APNKHVFNILINAYARCGMMDKAMLIFED 285

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M   ++    PD VT+ TV+S+L + G +D A      M  IGVP +   Y  L++G C 
Sbjct: 286 M---QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCN 342

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ KAKEL+ EM +     P V  ++ +I+        A      + M   G  P  +
Sbjct: 343 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVV 402

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           ++ +LM+ + L    + A  + D M     ++ +   +  LV+GYC+ G +++A  +   
Sbjct: 403 TFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRD 461

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           M   G  P    Y  + +G+  AR+   A  ++ E+ E
Sbjct: 462 MLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 499



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 107/482 (22%), Positives = 199/482 (41%), Gaps = 97/482 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P+   +++++   + SG     ESV++F       ++ S   ++    P    
Sbjct: 144 MVEAGTRPNSITYNSLIHGYSISGMWN--ESVRVF-------KQMSSCGVI----PTVDN 190

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLER 118
            N+ ++A    G+  +   +FD M   G KPD+++Y+ M+   A A+   L  +  +   
Sbjct: 191 CNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNL 250

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIR 166
           +L  GI      F  L+ AY   G ++ A  I + M+                 +C+I  
Sbjct: 251 MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI-- 308

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                       G  DD    F  ++   + PS               +Y  L++G  N 
Sbjct: 309 ------------GRLDDALHKFNHMVDIGVPPSEA-------------VYGCLIQGCCNH 343

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G +     ++  M  ++     P    ++++++ L K G +   + ++  M + G   N 
Sbjct: 344 GELVKAKELISEMMNKD--IPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNV 401

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALT 343
           +T+N L++GYC    +++A  LL  MA    IEP+   Y  L+DG+     IDD   ALT
Sbjct: 402 VTFNSLMEGYCLVGNMEEAFALLDAMAS-IGIEPNCYIYGTLVDGYCKNGRIDD---ALT 457

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP---------------- 387
            F +M  +G+ PT + Y+ ++     + +   A K+F EM+                   
Sbjct: 458 VFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLC 517

Query: 388 ------------------RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                              VK DI+ +N+++    ++G  +EAK + + +   G  PN+ 
Sbjct: 518 RNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQ 577

Query: 430 TY 431
           TY
Sbjct: 578 TY 579



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 145/319 (45%), Gaps = 28/319 (8%)

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
           E  +LPK    NS I   L K  M E   ++++     +++  D+   PD  TY+ ++  
Sbjct: 76  EQGVLPKILICNS-IIKELCK--MKEMDKAESI-----VQKMVDSGIAPDLFTYSLIIDG 127

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L K+ +MD+A +VL +M   G   N ITYN L+ GY      +++  + ++M+    I P
Sbjct: 128 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVI-P 186

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA--NK 378
            V + N  I        +  A   F+ M  +G  P  ISY+T++  +A ++   LA  + 
Sbjct: 187 TVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHN 246

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +F+ ML    +  +   +N+L+  Y R G++++A  I E M+  G  P+  T+ ++ + +
Sbjct: 247 IFNLMLTKG-IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 305

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
               +  +AL                 N   D+  P  P E +   L   C       KA
Sbjct: 306 CRIGRLDDAL--------------HKFNHMVDIGVP--PSEAVYGCLIQGCCNHGELVKA 349

Query: 499 LEIVACMEEHGIPPNKTKY 517
            E+++ M    IPP   KY
Sbjct: 350 KELISEMMNKDIPPPGVKY 368



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 172/391 (43%), Gaps = 45/391 (11%)

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           P + TYN++I    R  R  L + ++ R+L+ G+     ++ SL+  +V  G+++ A  +
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 70

Query: 151 -VQAMREG---RRDVCK-IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            ++ M +G   +  +C  II+EL           + D  + + +K++ + I         
Sbjct: 71  FLEMMEQGVLPKILICNSIIKELC-------KMKEMDKAESIVQKMVDSGI--------- 114

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
               AP+   Y+ ++ G      +    R+L  M    +  + P+ +TY +++     +G
Sbjct: 115 ----APDLFTYSLIIDGLCKSKAMDKAERVLEQMV---EAGTRPNSITYNSLIHGYSISG 167

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
             + + +V  +M+  GV       N  +    +  + ++AK +   M      +PD++SY
Sbjct: 168 MWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISY 226

Query: 326 NILIDGFILIDDS--AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           + ++ G+    DS  A     FN M  +GIAP K  +  L+ A+A       A  +F++M
Sbjct: 227 STMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDM 286

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                +  D V +  ++   CR+G +++A      M + G  P+ A YG L  G      
Sbjct: 287 QNKGMIP-DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCC---N 342

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
            GE +   + I E           + D+PPP
Sbjct: 343 HGELVKAKELISEM---------MNKDIPPP 364



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 135/315 (42%), Gaps = 20/315 (6%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P+   P    Y  L+  Y    R    + ++G   R   N   PD  +Y+ ++   VK G
Sbjct: 7   PRHSPPTIHTYNILIDCYRRVHRPDLGLAIVG---RLLKNGLGPDDFSYS-LIYGFVKDG 62

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D+A  +  EM   GV    +  N ++K  C+  ++DKA+ ++++M D   I PD+ +Y
Sbjct: 63  EVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG-IAPDLFTY 121

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           +++IDG         A     +M   G  P  I+Y +L+  +++S     + +VF +M  
Sbjct: 122 SLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQM-S 180

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              V   +   N  +    + G   EAK I + M   G  P++ +Y ++ +G + A    
Sbjct: 181 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATA---- 236

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
                     + C      +  +  L   + P++ + + L +   R     KA+ I   M
Sbjct: 237 ---------TDSCLADVHNI-FNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDM 286

Query: 506 EEHGIPPNKTKYKKI 520
           +  G+ P+   +  +
Sbjct: 287 QNKGMIPDTVTFATV 301


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 143/314 (45%), Gaps = 24/314 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+  IY  L+ GY          + L  M +   N   P  VTYT +V  L KA     A
Sbjct: 75  PDDAIYNALISGYSKAKDFGQAFKFLAEMVK---NHCLPTVVTYTNIVDGLCKAERTRDA 131

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EM   G   N  TYN++++G C++ ++D+AK++L EMA      PDVV+YN  I 
Sbjct: 132 VKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF-PDVVTYNSFIK 190

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G    D    A  F   M    + P  +SYTT++     S     A+++ D M  +    
Sbjct: 191 GLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDHM-SNRGCT 246

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+V ++ L++G+C+ G VE A  +++ M + G  PN+  Y SL   +      G+A  +
Sbjct: 247 PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDM 306

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
             E++ R                   PD    +A  D   +A   +KA  +   M E G 
Sbjct: 307 LVEMERR----------------GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGC 350

Query: 511 PPNKTKYKKIYVEM 524
            PN + Y  + V++
Sbjct: 351 TPNASSYSMLIVDI 364



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 188/457 (41%), Gaps = 85/457 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF---GAKPDVLTYNVMIKLCARASRKHLL 112
           PD A YNA+++      K K F Q F  + E       P V+TY  ++    +A R    
Sbjct: 75  PDDAIYNALISG---YSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDA 131

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL--DL 170
           V +L+ + + G +  + T+  +V        L+ A+ +++ M          +R    D+
Sbjct: 132 VKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM---------AVRGYFPDV 182

Query: 171 EDYSSENEG----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
             Y+S  +G    D  D+   F   +P                 P+   YTT++ G    
Sbjct: 183 VTYNSFIKGLCKCDRVDEARKFLARMP---------------VTPDVVSYTTVINGLCKS 227

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G +    RML  M    +    PD VTY++++    K G ++RA  +L  M ++G   N 
Sbjct: 228 GDLDSASRMLDHM---SNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNM 284

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           + YN LL    +   I KA+++L EM +     PDVVSYN  IDG    +    A   F+
Sbjct: 285 VAYNSLLGALHRLGHIGKAEDMLVEM-ERRGFTPDVVSYNACIDGLCKAERVKKAKAVFD 343

Query: 347 EMRARGIAPTKISYTTLM--------------KAFALSSQPKLANKVFDEMLRDPRV--- 389
            M  RG  P   SY+ L+              K         L +KV DE + +P V   
Sbjct: 344 RMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFY 403

Query: 390 ---------------------------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
                                        ++V WN+LV G C    + +A+ ++  M + 
Sbjct: 404 NVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDE 463

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKE-IKERC 458
           GF P+  TYG+L + +    K   AL L++E +K  C
Sbjct: 464 GFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGC 500



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 2/195 (1%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TY  ++  L +    D+A  V  EM       +  T+ ILL+G C+  Q++KA++LL  M
Sbjct: 9   TYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRM 68

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            +   + PD   YN LI G+    D   A  F  EM      PT ++YT ++     + +
Sbjct: 69  KEMGCV-PDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAER 127

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
            + A K+ DEM RD     +I  +N++VEG C    ++EAK+++E M   G++P+V TY 
Sbjct: 128 TRDAVKLLDEM-RDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYN 186

Query: 433 SLANGISLARKPGEA 447
           S   G+    +  EA
Sbjct: 187 SFIKGLCKCDRVDEA 201



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 178/452 (39%), Gaps = 79/452 (17%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           GY P V  +++ +  L                  V   RKF     V+   PD  +Y  V
Sbjct: 177 GYFPDVVTYNSFIKGLCKCDR-------------VDEARKFLARMPVT---PDVVSYTTV 220

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G      ++ D M   G  PDV+TY+ +I    +       + +L+ +L++G 
Sbjct: 221 INGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 280

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
              M  + SL+ A    G +  AE ++  M                              
Sbjct: 281 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMER---------------------------- 312

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM--RRQ 242
                                 + F P+   Y   + G     RV     +   M  R  
Sbjct: 313 ----------------------RGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGC 350

Query: 243 EDNASH-----PDHVTYTTVVSALVKAGSMDRARQVLAEMT--RIGVPANRITYNILLKG 295
             NAS       D + YT ++  L K G  D A  + +++   +I  P +   YN++L  
Sbjct: 351 TPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEP-DVFFYNVMLDS 409

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C++ QIDKA ++ ++M +  K   +VV++NIL+ G  + D  + A T    M   G  P
Sbjct: 410 HCKRRQIDKALQIHKQMLE--KNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIP 467

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y TL+ A     +   A ++F+E ++   V  D+V ++ L+ G     + EEA  +
Sbjct: 468 DFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVP-DVVTYSALITGLVHENMAEEAYLL 526

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEA 447
             ++ E  + P+  T G L   + L  KP +A
Sbjct: 527 FTKLVERRWVPDDKTLGLLHRKLKLLNKPRKA 558



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 185/467 (39%), Gaps = 46/467 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+++  LP V  ++ +V  L  +  +   ++VKL D +  +              P+   
Sbjct: 103 MVKNHCLPTVVTYTNIVDGLCKA--ERTRDAVKLLDEMRDK-----------GCSPNIYT 149

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++       K  +  ++ ++M   G  PDV+TYN  IK   +  R       L R  
Sbjct: 150 YNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR-- 207

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            M +T  + ++ +++      GDL+ A  ++  M    R         D+  YSS  +G 
Sbjct: 208 -MPVTPDVVSYTTVINGLCKSGDLDSASRMLDHM--SNRGCTP-----DVVTYSSLIDG- 258

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                  F K             +L     PN   Y +L+      G +     ML  M 
Sbjct: 259 -------FCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME 311

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR----------ITYN 290
           R+      PD V+Y   +  L KA  + +A+ V   M   G   N           + Y 
Sbjct: 312 RR---GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYT 368

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           +LL G C+  + D+A  L  ++ D+   EPDV  YN+++D          AL    +M  
Sbjct: 369 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 428

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +      +++  L+    +  +   A  +   M+ +  +  D V +  LV+  C+ G   
Sbjct: 429 KNCCNV-VTWNILVHGLCVDDRLSDAETMLLTMVDEGFIP-DFVTYGTLVDAMCKCGKSA 486

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            A  + E   + G  P+V TY +L  G+       EA LL+ ++ ER
Sbjct: 487 AALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVER 533



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 21/282 (7%)

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           D +  PD  T+  ++  L ++  +++AR++L  M  +G   +   YN L+ GY +     
Sbjct: 35  DKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFG 94

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A + L EM  +  + P VV+Y  ++DG    + +  A+   +EMR +G +P   +Y  +
Sbjct: 95  QAFKFLAEMVKNHCL-PTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVI 153

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           ++      +   A K+ +EM        D+V +N  ++G C+   V+EA++ + RM    
Sbjct: 154 VEGLCEERKLDEAKKMLEEMAVRGYFP-DVVTYNSFIKGLCKCDRVDEARKFLARMPVT- 211

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             P+V +Y ++ NG+  +     A  +   +  R                   PD     
Sbjct: 212 --PDVVSYTTVINGLCKSGDLDSASRMLDHMSNR----------------GCTPDVVTYS 253

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
           +L D   +     +A+ ++  M + G  PN   Y  +   +H
Sbjct: 254 SLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALH 295



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G      +Y  L+       +   A+ VF EM+ D   + D   + +L+ G CR   +E+
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMI-DKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSD 470
           A++++ RMKE G  P+ A Y +L +G S A+  G+A   L + +K  C            
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHC------------ 108

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             P +     ++D L     +A   R A++++  M + G  PN   Y  I
Sbjct: 109 -LPTVVTYTNIVDGLC----KAERTRDAVKLLDEMRDKGCSPNIYTYNVI 153


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 142/317 (44%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K + P+  + T L+KG+ N   +    R++G + +       PD   Y  V+S   K
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKH----GKPDVFAYNAVISGFCK 56

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A  ++ A+ VL  M R G   + +T+NI++  +C + +ID A ++  E+  D   +P ++
Sbjct: 57  ANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLI 116

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y ILI+ +IL      AL   +EM +RG+ P   +Y  + +      +   A + F   
Sbjct: 117 TYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFE-FVRT 175

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           L     K D++ +N+L+      G  +E ++ +  +   G  PNV TY  L + +    K
Sbjct: 176 LNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGK 235

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             E++ L K +KE+                 L PD    D L     R      A+E + 
Sbjct: 236 IEESVNLVKVMKEK----------------GLTPDAYCYDPLIAAFCREGKLDMAIEFLD 279

Query: 504 CMEEHGIPPNKTKYKKI 520
           CM   G  P+   Y  I
Sbjct: 280 CMICDGFLPDIVNYNTI 296



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 184/423 (43%), Gaps = 36/423 (8%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            KPD  AYNAV++      + +    + D+M   G  PDV+T+N+MI       +  L +
Sbjct: 40  GKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLAL 99

Query: 114 FVLERIL-EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------------ 154
            V E +L +      + T+  L+ AY+  G ++ A  ++  M                  
Sbjct: 100 KVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRG 159

Query: 155 --REGRRD-VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA- 210
             +EG+ D   + +R L+     S     D     +  + L N          + + F+ 
Sbjct: 160 LCKEGKVDRAFEFVRTLN-----SRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSR 214

Query: 211 ---PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              PN   Y+ L+     +G++ ++V ++  M+ +      PD   Y  +++A  + G +
Sbjct: 215 GCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEK---GLTPDAYCYDPLIAAFCREGKL 271

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           D A + L  M   G   + + YN ++   C+    D A E+  ++ D+    P+V SYN 
Sbjct: 272 DMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKL-DEVGCPPNVSSYNT 330

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           ++       D   AL   ++M ++GI P  I+Y +L+           A  +  +ML   
Sbjct: 331 MLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSG- 389

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           R + +IV++  ++ G C+   +++A  ++  M ENG  PN  TY  L  GI  +    +A
Sbjct: 390 RFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQA 449

Query: 448 LLL 450
           + L
Sbjct: 450 MEL 452



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 116/501 (23%), Positives = 213/501 (42%), Gaps = 94/501 (18%)

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
           V K   PD++  +K     +N+      N+ K  + + + ++      KPDV  YN +I 
Sbjct: 2   VAKDYQPDVILCTKLIKGFFNS-----RNIDKATRVMGILEKH----GKPDVFAYNAVIS 52

Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
              +A+R      VL+R+   G +  + T   ++  + G G +++A              
Sbjct: 53  GFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLAL------------- 99

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
                                   +VFE+LL ++   + +P L+          YT L++
Sbjct: 100 ------------------------KVFEELLKDN---NCKPTLIT---------YTILIE 123

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
            Y+ EG + + +++L  M  +      PD  TY  +   L K G +DRA + +  +   G
Sbjct: 124 AYILEGGIDEALKLLDEMLSR---GLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRG 180

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              + ITYNILL+    Q + D+ ++ + E+      EP+VV+Y+ILI           +
Sbjct: 181 CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRG-CEPNVVTYSILISSLCRDGKIEES 239

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           +     M+ +G+ P    Y  L+ AF    +  +A +  D M+ D  +  DIV +N ++ 
Sbjct: 240 VNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLP-DIVNYNTIMA 298

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
             C+ G  + A  I  ++ E G  PNV++Y ++ + +  +     AL +  ++  +    
Sbjct: 299 ALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSK---- 354

Query: 462 KEGVNAD----SDLPPPLKPD---EELLDALADIC------------------VRAAFFR 496
             G++ D    + L   L  D   +E +  LAD+                    +A    
Sbjct: 355 --GIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRID 412

Query: 497 KALEIVACMEEHGIPPNKTKY 517
            A+E++A M E+G  PN+T Y
Sbjct: 413 DAIEVLAAMIENGCQPNETTY 433



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 145/321 (45%), Gaps = 30/321 (9%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            KPD   YN +L A  N GK  +  +   ++   G +P+V+TY+++I    R  +    V
Sbjct: 181 CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESV 240

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +++ + E G+T     +  L+AA+   G L++A   +  M      +C      D+ +Y
Sbjct: 241 NLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCM------ICDGFLP-DIVNY 293

Query: 174 SS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++        G+ D   E+F KL     +    PP        N   Y T++    + G 
Sbjct: 294 NTIMAALCKNGNGDHAVEIFGKL-----DEVGCPP--------NVSSYNTMLSALWSSG- 339

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
             D  R LG + +       PD +TY +++S L + G +D A  +LA+M       N ++
Sbjct: 340 --DRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVS 397

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y  +L G C+  +ID A E+L  M ++   +P+  +Y +LI+G         A+   N +
Sbjct: 398 YKTVLLGLCKAHRIDDAIEVLAAMIENG-CQPNETTYTLLIEGIGFSGSRTQAMELANSL 456

Query: 349 RARGIAPTKISYTTLMKAFAL 369
                A ++ S+  L K F L
Sbjct: 457 YIMN-AISEDSFKRLNKTFPL 476



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 50/384 (13%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P +  ++ ++      G  G  E++KL D ++ R             +PDT  YN +   
Sbjct: 113 PTLITYTILIEAYILEG--GIDEALKLLDEMLSR-----------GLEPDTFTYNVITRG 159

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
               GK  +  +    ++  G KPDV+TYN++++      +       +  I   G    
Sbjct: 160 LCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPN 219

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-------NEGD 180
           + T+  L+++    G +E +  +V+ M+E         + L  + Y  +        EG 
Sbjct: 220 VVTYSILISSLCRDGKIEESVNLVKVMKE---------KGLTPDAYCYDPLIAAFCREGK 270

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D   E  + ++ +              F P+   Y T+M      G     V + G + 
Sbjct: 271 LDMAIEFLDCMICDG-------------FLPDIVNYNTIMAALCKNGNGDHAVEIFGKL- 316

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             ++    P+  +Y T++SAL  +G   RA  ++++M   G+  + ITYN L+   C+  
Sbjct: 317 --DEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDG 374

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +D+A  LL +M    + +P++VSY  ++ G         A+     M   G  P + +Y
Sbjct: 375 MVDEAIGLLADML-SGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTY 433

Query: 361 TTLMKAFALSSQ----PKLANKVF 380
           T L++    S       +LAN ++
Sbjct: 434 TLLIEGIGFSGSRTQAMELANSLY 457



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 16/138 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V +++T++S L +SGD       +   ++ + + K  DPD+++        YN++
Sbjct: 320 GCPPNVSSYNTMLSALWSSGD-----RYRALGMISQMLSKGIDPDVIT--------YNSL 366

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTY-NVMIKLCARASRKHLLVFVLERILEMG 123
           ++     G   + + L   M     +P++++Y  V++ LC +A R    + VL  ++E G
Sbjct: 367 ISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLC-KAHRIDDAIEVLAAMIENG 425

Query: 124 ITLCMTTFQSLVAAYVGF 141
                TT+  L+   +GF
Sbjct: 426 CQPNETTYTLLIEG-IGF 442


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 126/535 (23%), Positives = 227/535 (42%), Gaps = 70/535 (13%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           A+  ++     +G   K ++ F  M +F   PDV TYN+++ +  + +   L + V  R+
Sbjct: 128 AFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRM 187

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV-------CKIIRELDLED 172
           +++     + TF  L+      G+++ A  +   M +  R +       C +I  L    
Sbjct: 188 MKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQ--RGILPDAFTYCVVISGLC--- 242

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPS-----------------SEPPLLPKTFAPNS-- 213
                    DD   +F+K+  + + P                   E   L + F  +   
Sbjct: 243 ----RSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYV 298

Query: 214 ---RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
              R Y+ L++G     R  D V++L   R+  ++   PD   YT ++  L +AG +  A
Sbjct: 299 LDVRGYSCLIRGLFRAKRYED-VQLL--YRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDA 355

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EMT  GV  + + YN+L+KG+C    + +A+ L  E++      P+V +Y+ILI 
Sbjct: 356 LELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCF-PNVKTYSILIS 414

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------- 383
           G      +  A   FNEM   G  P+ +++ +L+     + Q + A+ +F +M       
Sbjct: 415 GMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPS 474

Query: 384 --LR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
             LR    P   +D  +   +VE  C  GL+ +A RI+ ++ ++G  P + TY  L NG 
Sbjct: 475 LFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGF 534

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
                   A  L++E++ +                 L PD      L +  +R      A
Sbjct: 535 CKLGNFNGAYKLFREMQFK----------------GLSPDTVTYGTLINGLLRFQREEDA 578

Query: 499 LEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFK 553
            ++   ME++G  P+   Y+ +   M  RM   +  S   +  R  R +  EA K
Sbjct: 579 YKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIK 633



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 183/454 (40%), Gaps = 80/454 (17%)

Query: 26  DGPVESVKLFDVVVK---RVRKFSDPDIV------SDSKPDTAAYNAVLNACANLGKPKK 76
           DG V  V+ +  +++   R +++ D  ++       + KPD   Y  ++   A  GK + 
Sbjct: 295 DGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRD 354

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
            L+L ++M E G  PD + YNV+IK                   +MG+     + Q  ++
Sbjct: 355 ALELLNEMTESGVVPDTVCYNVLIK----------------GFCDMGLLSEARSLQLEIS 398

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
            +  F +++    ++  M       C+               G   D  E+F ++     
Sbjct: 399 RHDCFPNVKTYSILISGM-------CR--------------NGLTRDAQEIFNEMEKLGC 437

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR---------RQEDNAS 247
            PS+               + +L+ G    G++     +   M          R     S
Sbjct: 438 YPSAVT-------------FNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPS 484

Query: 248 HP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
           H  D  +   +V  L  +G + +A ++L ++   G      TYNIL+ G+C+    + A 
Sbjct: 485 HVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAY 544

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           +L REM     + PD V+Y  LI+G +       A   F++M   G  P    Y T+M  
Sbjct: 545 KLFREMQFKG-LSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTW 603

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVD--IVAWNMLVEGYCRMGLVEEAKRIIERM--KEN 422
                +   A  ++ + LR+ R + D  I A    +EGY     VE+A R +  M  K N
Sbjct: 604 MCRRMELPRAFSLWLKYLRNIRSQEDEAIKA----IEGYFEKQEVEKAVRGLLEMDFKLN 659

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            F  ++  Y     G+   R+ GEAL ++  ++E
Sbjct: 660 DF--DLGPYAIWLIGLCQTRRVGEALKIFLILEE 691



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 51/295 (17%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD-- 314
           +   L+    ++   Q L  +   G+  +   + +L+K Y +    DKA E    M D  
Sbjct: 97  ITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFD 156

Query: 315 ------------DAKIE--------------------PDVVSYNILIDGFILIDDSAGAL 342
                       D  I+                    P+V +++ILIDG     +   AL
Sbjct: 157 CTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDAL 216

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F+EM  RGI P   +Y  ++     S +   A ++FD+M +D  V  D V  N L+ G
Sbjct: 217 HLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKM-KDSGVGPDFVTCNALLNG 275

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
           +C +  V+EA  ++   +++G+  +V  Y  L  G+  A++  +  LL++++ E      
Sbjct: 276 FCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIE------ 329

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                       +KPD  L   +      A   R ALE++  M E G+ P+   Y
Sbjct: 330 ----------DNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCY 374


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 202/476 (42%), Gaps = 74/476 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMH-EFGAKPDVLTYNVMIK-LCARASRKHLL 112
           +P  AA+ A++ A A+ G+  + +  F +M  EFG +P    YN +++ L A      L 
Sbjct: 134 QPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLA 193

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           + +  R++  G      T+  L+                         +CK         
Sbjct: 194 LALYNRMVAAGCLPNRATYNVLMDG-----------------------LCK--------- 221

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                 G   D  ++F+++L   I P             N + +T L+    N G++ + 
Sbjct: 222 -----RGTAVDALKLFDEMLQRGITP-------------NVKTHTILLSSMCNAGQLKEA 263

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT-YNI 291
             +L +M   ED    PD VTY   +S L KAG +D A + L  + R G     +  Y+ 
Sbjct: 264 ENLLNSM---EDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSC 320

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEM 348
           L+ G     + ++  +   E+ + A   PD+V Y I+I G      IDD   A  FF+EM
Sbjct: 321 LIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDD---AFAFFDEM 377

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
           + +   P    Y TL+KA   S     A  +  EM ++  V +D     +++ G C+  L
Sbjct: 378 KEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQN-NVVLDTNTHTIMIHGLCKKQL 436

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           V+EA ++ + M E G +P V TY  L +G+  A +  EA +L+ ++       + G N  
Sbjct: 437 VDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKM-------EVGNNPS 489

Query: 469 SDLPPPLKP----DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L   L      D E L  L D   ++    KA +++  + + G+ P+   Y  +
Sbjct: 490 LFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTL 545



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 209/469 (44%), Gaps = 55/469 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P    ++ V+  L ASG   P+ ++ L++ +V            +   P+ A YN +
Sbjct: 168 GCRPTTFVYNAVLRVLVASGGVVPL-ALALYNRMV-----------AAGCLPNRATYNVL 215

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G     L+LFD+M + G  P+V T+ +++     A +      +L  + + G 
Sbjct: 216 MDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGC 275

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG----- 179
                T+ + ++     G ++ A   ++A+R     V      L L+ YS   +G     
Sbjct: 276 PPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFV------LGLKGYSCLIDGLFLAG 329

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             ++  + + ++L  +             F+P+  +YT +++G    GR+ D       M
Sbjct: 330 RYEEGFQCYMEVLEQA------------DFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEM 377

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           + +      PD   Y T++ AL  +G +D AR +++EM +  V  +  T+ I++ G C++
Sbjct: 378 KEKRFT---PDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKK 434

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI- 358
             +D+A ++   M +     P V++YN+LIDG         A   F +M   G  P+   
Sbjct: 435 QLVDEAMQVFDGMVE-VGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEV-GNNPSLFL 492

Query: 359 -------------SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
                        S   L+ +   S Q   A K+   ++ D  V  D+V +N L+ G C+
Sbjct: 493 RLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIM-DSGVVPDVVTYNTLLNGLCK 551

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +  ++ A R+   ++  GF  +  TYG+L + +  A +  +A+ L+++I
Sbjct: 552 VRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDI 600



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 187/472 (39%), Gaps = 103/472 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G LP+   ++ ++  L   G    V+++KLFD +++R              P+   
Sbjct: 200 MVAAGCLPNRATYNVLMDGLCKRGT--AVDALKLFDEMLQR-----------GITPNVKT 246

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  +L++  N G+ K+   L + M + G  PD +TYN  +    +A R    +  LE + 
Sbjct: 247 HTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALR 306

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED----YS-- 174
             G         + V    G+  L     +     EG +   +++ + D       Y+  
Sbjct: 307 RTG---------TFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIM 357

Query: 175 ---SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                  G  DD    F+++               K F P++  Y TL+K   + G + D
Sbjct: 358 IRGCAEAGRIDDAFAFFDEMKE-------------KRFTPDTFCYNTLLKALCDSGDL-D 403

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             R L  M     N    D  T+T ++  L K   +D A QV   M  +G     +TYN+
Sbjct: 404 GARSL--MSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNV 461

Query: 292 LLKGY------------------------------------------------CQQLQID 303
           L+ G                                                 CQ  Q+ 
Sbjct: 462 LIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVL 521

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           KA +LLR + D   + PDVV+YN L++G   + +  GAL  F E++ +G +  +I+Y TL
Sbjct: 522 KAYKLLRGIMDSGVV-PDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTL 580

Query: 364 MKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + +   + +   A  +F ++L     P + +    +N ++   CRM  + +A
Sbjct: 581 IDSLLRAHRYNDAMTLFQDILHIGGTPSLSI----YNSIMRSLCRMNKLSQA 628



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 27/212 (12%)

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY-CRMG 407
           +A G+ P   ++  L+ A A + +   A   F  M  +   +     +N ++       G
Sbjct: 129 QAAGLQPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGG 188

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
           +V  A  +  RM   G  PN ATY  L +G+       +AL L+ E+ +R          
Sbjct: 189 VVPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQR---------- 238

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
              + P +K    LL ++ +    A   ++A  ++  ME+ G PP++  Y          
Sbjct: 239 --GITPNVKTHTILLSSMCN----AGQLKEAENLLNSMEDKGCPPDEVTYNA-------- 284

Query: 528 MFTSKHASQARQDRRRERKRAA-EAFKFWLGL 558
            F S      R D   ER  A      F LGL
Sbjct: 285 -FLSGLCKAGRVDEAIERLEALRRTGTFVLGL 315



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 3/147 (2%)

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSS 371
           A  A ++P   ++  LI           A+  F+ M    G  PT   Y  +++    S 
Sbjct: 128 AQAAGLQPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASG 187

Query: 372 QP-KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
               LA  +++ M+    +  +   +N+L++G C+ G   +A ++ + M + G  PNV T
Sbjct: 188 GVVPLALALYNRMVAAGCLP-NRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKT 246

Query: 431 YGSLANGISLARKPGEALLLWKEIKER 457
           +  L + +  A +  EA  L   ++++
Sbjct: 247 HTILLSSMCNAGQLKEAENLLNSMEDK 273


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 205/469 (43%), Gaps = 48/469 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G LP+V  ++T++        DG  + +K  D     +R       +   +P+   
Sbjct: 9   MERNGCLPNVVTYNTMI--------DGYCK-LKRTDEAFGFLRSMG----LKGLEPNLIT 55

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++N     G+ K+  ++  +M   G  PD +TYN ++    +    H  + +   ++
Sbjct: 56  FNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMV 115

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G++  + T+ SL+ +    G+L  A      M    R +C   R           +G 
Sbjct: 116 RNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMH--VRGLCPNERTYTTIINGFAQQGL 173

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D+   V  ++  +              F P+   Y  L+ G+   GR+ + + +L  M 
Sbjct: 174 LDEAYRVLNEMTRSG-------------FIPSIVTYNALINGHCVLGRMEEAIGLLQDMV 220

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      PD V+Y+T++S   +   +DRA Q+  EM    V  + +TY+ L++G C+Q 
Sbjct: 221 GK---GVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQR 277

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +A ++ +EM    K+ PD  +Y  LI+ +    D   AL   +EM  +G  P  ++Y
Sbjct: 278 RLTEACDMFQEML-TIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTY 336

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE---------------GYCR 405
             L+      ++ K A ++  ++  D  +    V +N L+E               G+C 
Sbjct: 337 NVLINGLNKQARSKEARRLLLKLFYDDSIP-SAVTYNTLIENCCNIEFKSAVALVKGFCM 395

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            GL++EA ++ E M      PN A Y  + +G        +A  L+KE+
Sbjct: 396 KGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEM 444



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 170/371 (45%), Gaps = 22/371 (5%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+ F +M   G  P+V+TYN MI    +  R       L  +   G+   + TF  ++  
Sbjct: 3   LRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 138 YVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
               G L E +E +V+  R+G           D   Y++   G   + +  F + L    
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVP--------DEVTYNTLVNGYCKEGN--FHQAL---- 108

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                  ++    +PN   YT+L+      G ++  +     M  +      P+  TYTT
Sbjct: 109 --VLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVR---GLCPNERTYTT 163

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           +++   + G +D A +VL EMTR G   + +TYN L+ G+C   ++++A  LL++M    
Sbjct: 164 IINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
            + PDVVSY+ +I GF    +   A     EM  + + P  ++Y++L++      +   A
Sbjct: 224 -VLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEA 282

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             +F EML   ++  D   +  L+  YC+ G + +A  + + M + GF P+  TY  L N
Sbjct: 283 CDMFQEML-TIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLIN 341

Query: 437 GISLARKPGEA 447
           G++   +  EA
Sbjct: 342 GLNKQARSKEA 352



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 204/462 (44%), Gaps = 57/462 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R GY+P    ++T+V+     G+      +       + VR    P++V+        
Sbjct: 79  MSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLH-----AEMVRNGLSPNVVT-------- 125

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y +++N+    G   + ++ FDQMH  G  P+  TY  +I   A+         VL  + 
Sbjct: 126 YTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMT 185

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
             G    + T+ +L+  +   G +E A  ++Q M      V K +   D+  YS+   G 
Sbjct: 186 RSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDM------VGKGVLP-DVVSYSTIISGF 238

Query: 180 -DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
             + + D  F+           +  ++ K+  P++  Y++L++G   + R+++   M   
Sbjct: 239 ARNQELDRAFQM----------KVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQE 288

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M   +     PD  TYTT+++A  K G +++A  +  EM + G   + +TYN+L+ G  +
Sbjct: 289 MLTIK---LPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNK 345

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           Q +  +A+ LL ++  D  I P  V+YN LI+    I+                      
Sbjct: 346 QARSKEARRLLLKLFYDDSI-PSAVTYNTLIENCCNIEFK-------------------- 384

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           S   L+K F +      A++VF+ M+     K +   +N+++ G+CR+G V +A ++ + 
Sbjct: 385 SAVALVKGFCMKGLMDEADQVFESMINKNH-KPNEAIYNVIIHGHCRIGNVLKAYKLYKE 443

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           M    F P+  T  +L   +      GE   +  +I   C++
Sbjct: 444 MVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKL 485



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 23/183 (12%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWN 397
            L FF EM   G  P  ++Y T++  +    + K  ++ F   LR   +K    +++ +N
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYC---KLKRTDEAFG-FLRSMGLKGLEPNLITFN 57

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           M++ G CR G ++E   ++  M   G+ P+  TY +L NG        +AL+L  E+   
Sbjct: 58  MIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEM--- 114

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                      + L P +     L++++     +A    +A+E    M   G+ PN+  Y
Sbjct: 115 ---------VRNGLSPNVVTYTSLINSMC----KAGNLNRAMEFFDQMHVRGLCPNERTY 161

Query: 518 KKI 520
             I
Sbjct: 162 TTI 164



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 17/147 (11%)

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           + F EM R+  +  ++V +N +++GYC++   +EA   +  M   G  PN+ T+  + NG
Sbjct: 4   RFFKEMERNGCLP-NVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +    +  E   +  E+  +  V                PDE   + L +   +   F +
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYV----------------PDEVTYNTLVNGYCKEGNFHQ 106

Query: 498 ALEIVACMEEHGIPPNKTKYKKIYVEM 524
           AL + A M  +G+ PN   Y  +   M
Sbjct: 107 ALVLHAEMVRNGLSPNVVTYTSLINSM 133


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 21/314 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   PN   Y  ++      G+V++  R+L   R        PD V YTT++    K G+
Sbjct: 217 KGLKPNPYTYNGVILLLCKTGKVAEAERVL---REMISEGIAPDGVIYTTLIDGFCKLGN 273

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A ++  EM +  +  + ITY  ++ G CQ  ++ +A +L  EM    ++EPD V+Y 
Sbjct: 274 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV-CKRLEPDEVTYT 332

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LIDG+        A +  N+M   G+ P  ++YT L        +   AN++  EM R 
Sbjct: 333 ALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRK 392

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             ++++I  +N LV G C+ G +++A ++++ M+  GF+P+  TY +L +    +R+   
Sbjct: 393 G-LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 451

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  L +++ +R                 L+P     + L +    +       +++  M 
Sbjct: 452 AHELLRQMLDR----------------ELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWML 495

Query: 507 EHGIPPNKTKYKKI 520
           E GI PN T Y  +
Sbjct: 496 EKGIMPNATTYNSL 509



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 190/414 (45%), Gaps = 31/414 (7%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L+L ++M   G KP+  TYN +I L  +  +      VL  ++  GI      + +L+  
Sbjct: 208 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDG 267

Query: 138 YVGFGDLEIAETIVQAMREGRRD------------VCKIIRELDLEDYSSENEGDDDDDD 185
           +   G++  A  +   M++ +              +C+  R ++ +    E      + D
Sbjct: 268 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 327

Query: 186 EVFEKLLPNSINP--------SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           EV    L +            S    +L     PN   YT L  G    G V     +L 
Sbjct: 328 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 387

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M R+       +  TY ++V+ L KAG++D+A +++ +M   G   + +TY  L+  YC
Sbjct: 388 EMCRK---GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC 444

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  ++ +A ELLR+M D  +++P VV++N+L++GF +             M  +GI P  
Sbjct: 445 KSREMVRAHELLRQMLD-RELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA 503

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            +Y +L+K + + +  +   +++  M     V  D   +N+L++G+C+   ++EA  +  
Sbjct: 504 TTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVP-DGNTYNILIKGHCKARNMKEAWFLHR 562

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
            M   GF   V++Y +L  G    +K  EA  L++++      ++EG+ AD ++
Sbjct: 563 DMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQM------RREGLVADREI 610



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 192/460 (41%), Gaps = 68/460 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P    ++T++      G+     + +LFD + KR  K S         PD   
Sbjct: 249 MISEGIAPDGVIYTTLIDGFCKLGNVSS--AYRLFDEMQKR--KIS---------PDFIT 295

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y AV+      G+  +  +LF +M     +PD +TY  +I    +  +      +  ++L
Sbjct: 296 YTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQML 355

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +MG+T  + T+ +L       G+++ A  ++  M       C+  + L+L  Y+      
Sbjct: 356 QMGLTPNIVTYTALADGLCKCGEVDTANELLHEM-------CR--KGLELNIYT------ 400

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                              Y +L+ G    G +   V++   M+
Sbjct: 401 -----------------------------------YNSLVNGLCKAGNIDQAVKL---MK 422

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E    HPD VTYTT++ A  K+  M RA ++L +M    +    +T+N+L+ G+C   
Sbjct: 423 DMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSG 482

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++  ++LL+ M +   I P+  +YN LI  + + ++       +  M A+G+ P   +Y
Sbjct: 483 MLEDGEKLLKWMLEKG-IMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTY 541

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+K    +   K A  +  +M+      + + ++N L++G+ +     EA+ + E+M+
Sbjct: 542 NILIKGHCKARNMKEAWFLHRDMV-GKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMR 600

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             G   +   Y   A+      K    L L  E  E+C V
Sbjct: 601 REGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLV 640



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 131/249 (52%), Gaps = 18/249 (7%)

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           +++ EM   G+  N  TYN ++   C+  ++ +A+ +LREM  +  I PD V Y  LIDG
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG-IAPDGVIYTTLIDG 267

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F  + + + A   F+EM+ R I+P  I+YT ++     + +   A+K+F EM+   R++ 
Sbjct: 268 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV-CKRLEP 326

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V +  L++GYC+ G ++EA  +  +M + G  PN+ TY +LA+G+    K GE     
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC---KCGEVDTAN 383

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           + + E C   ++G          L+ +    ++L +   +A    +A++++  ME  G  
Sbjct: 384 ELLHEMC---RKG----------LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH 430

Query: 512 PNKTKYKKI 520
           P+   Y  +
Sbjct: 431 PDAVTYTTL 439


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 219/506 (43%), Gaps = 71/506 (14%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  AY  ++NA ++ G+ +  + LF++M + G  P ++TYNV++ +  +           
Sbjct: 192 DVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGK----------- 240

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFG---DLEIAETIVQAMREGR--RDVCKIIRELDLE 171
                MG+     T  +LV A    G   DL    T++   R G    +   + +++ LE
Sbjct: 241 -----MGMPWSNVT--ALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLE 293

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT--------FAPNSRIYTTLMKGY 223
            ++          D+V    L +    S  P    K         F+P S  Y +L+  Y
Sbjct: 294 GFTP---------DKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAY 344

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
              G + + + +   M  +      PD  TYTT++S   KAG  D A QV  EM  +G  
Sbjct: 345 AKGGLLEEALDLKTQMVHK---GIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCK 401

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKI---EPDVVSYNILIDGFILIDDSAG 340
            N  T+N L+K +  +    K  E+++ + DD K+    PD+V++N L+  F      + 
Sbjct: 402 PNICTFNALIKMHGNR---GKFAEMMK-VFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQ 457

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
               F EM+  G    + ++ TL+ A++       A  V+  ML +  V  D+  +N ++
Sbjct: 458 VSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSML-EAGVVPDLSTYNAVL 516

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL----ANGISLARKPGEALLLWKEIKE 456
               R GL E++++++  M++    PN  +Y SL    ANG  + R    A  ++    E
Sbjct: 517 AALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVE 576

Query: 457 RCEVKKEG---VNADSDL------------PPPLKPDEELLDALADICVRAAFFRKALEI 501
              V  +    VN+ SDL               + PD   L+A+  I  R     KA EI
Sbjct: 577 THAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEI 636

Query: 502 VACMEEHGIPPNKTKYKKIYVEMHSR 527
           +  M E    P+ T Y  + + M+SR
Sbjct: 637 LNFMHETRFTPSLTTYNSL-MYMYSR 661



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 215/526 (40%), Gaps = 88/526 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN +++ C      ++ + LF QM   G  PD +TYN ++ +  ++ R    + V
Sbjct: 262 PDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKV 321

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G +    T+ SL++AY   G LE A  +   M      V K I+  D+  Y++
Sbjct: 322 LQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQM------VHKGIKP-DVFTYTT 374

Query: 176 -----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                E  G DD   +VF ++                   PN   +  L+K + N G+ +
Sbjct: 375 LLSGFEKAGKDDFAIQVFLEMRAVGCK-------------PNICTFNALIKMHGNRGKFA 421

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +++   ++    N S PD VT+ T+++   + G   +   +  EM R G  A R T+N
Sbjct: 422 EMMKVFDDIKLC--NCS-PDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFN 478

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNE 347
            L+  Y +    D+A  + + M  +A + PD+ +YN ++       L + S   L    +
Sbjct: 479 TLISAYSRCGSFDQAMAVYKSML-EAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMED 537

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------------------------ 383
            R +   P ++SY++L+ A+A   + +  N   +E+                        
Sbjct: 538 GRCK---PNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDL 594

Query: 384 ----------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
                     LR   +  DI   N ++  Y R  +V +A  I+  M E  F P++ TY S
Sbjct: 595 LIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNS 654

Query: 434 LANGISLARKPGEALLLWKEIKE------------------RCEVKKEGVNADSDLP-PP 474
           L    S +    ++  + +E+ E                  R    KE     S++    
Sbjct: 655 LMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSA 714

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L PD    +         + F +A+++V  M + G  P++  Y  I
Sbjct: 715 LVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSI 760



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 1/213 (0%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           +++  H D   YT +++A   +G    A  +  +M + G     ITYN++L  Y +    
Sbjct: 185 QNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMP 244

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
                 L E      + PD+ +YN LI           A+  F +M+  G  P K++Y  
Sbjct: 245 WSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNA 304

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+  F  S +P+ A KV  EM  +       V +N L+  Y + GL+EEA  +  +M   
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTS-VTYNSLISAYAKGGLLEEALDLKTQMVHK 363

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           G  P+V TY +L +G   A K   A+ ++ E++
Sbjct: 364 GIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMR 396



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/432 (20%), Positives = 179/432 (41%), Gaps = 47/432 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVVK------- 40
           M+  G  P V  ++T++S    +G D             G   ++  F+ ++K       
Sbjct: 360 MVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGK 419

Query: 41  --RVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
              + K  D   + +  PD   +N +L      G   +   +F +M   G   +  T+N 
Sbjct: 420 FAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNT 479

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I   +R       + V + +LE G+   ++T+ +++AA    G  E +E ++  M +GR
Sbjct: 480 LISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGR 539

Query: 159 RDVCKIIRELDLEDYSS--ENEGDDDDDDEVFEK-------LLPNSINPSSEPPLLPKT- 208
               ++     L  Y++  E E  +   +E++         LL   +  +S+  LL +T 
Sbjct: 540 CKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETE 599

Query: 209 ----------FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                      +P+      ++  Y  +  V+    +L  M         P   TY +++
Sbjct: 600 RAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFT---PSLTTYNSLM 656

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
               ++ +  ++ ++L E+   G+  +RI+YN ++  YC+  ++ +A  +  EM D A +
Sbjct: 657 YMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALV 716

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            PDVV+YN  I  +      A A+     M  +G  P + +Y +++  +    Q   AN 
Sbjct: 717 -PDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANS 775

Query: 379 VFDEMLR-DPRV 389
               +   DP V
Sbjct: 776 FVKNLSNLDPHV 787



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 16/203 (7%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           +  DV +Y  LI+ +        A+  FN+M+  G  PT I+Y  ++  +     P    
Sbjct: 189 VHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNV 248

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
               E +R   V  D+  +N L+    R  L EEA  + ++MK  GF P+  TY +L + 
Sbjct: 249 TALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDV 308

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
              +R+P EA+ + +E++                     P     ++L     +     +
Sbjct: 309 FGKSRRPQEAMKVLQEMEAN----------------GFSPTSVTYNSLISAYAKGGLLEE 352

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           AL++   M   GI P+   Y  +
Sbjct: 353 ALDLKTQMVHKGIKPDVFTYTTL 375


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 224/518 (43%), Gaps = 52/518 (10%)

Query: 37  VVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
           +++K++RK    +++S   P+   YN ++N     GK     Q+F++M +F   P+ +TY
Sbjct: 324 LLLKKMRK----EMIS---PNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTY 376

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           N +I            + +L+ +   G+ L   T+ +L+         E+A+ +++ MR 
Sbjct: 377 NALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRV 436

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
               V  I   + L D   +N G  D+  ++   +  + +N             P+   Y
Sbjct: 437 NDMVVGHIAYTV-LIDGLCKN-GMLDEAVQLVGNMYKDGVN-------------PDVITY 481

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           ++L+ G+   G +     ++  M R   +    + + Y+T++    + G++  A +V A 
Sbjct: 482 SSLINGFCRVGNIKSAKEIICRMYR---SGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAV 538

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G  A+  T N+L+   C+  ++ +A++ L  M+    + P+ ++Y+ +I+G+  I 
Sbjct: 539 MNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLV-PNSITYDCIINGYGSIG 597

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           D   A +FF++M   G  P+  +Y +L+K          A K  + +   P   VD V +
Sbjct: 598 DPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGA-VDSVMY 656

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW----- 451
           N L+   C+ G + EA  + ++M +N   P+  TY SL  G+    K   A+ L+     
Sbjct: 657 NTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMG 716

Query: 452 ------KEIKERCEV---------KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
                   +   C V         K      +  +     PD    +A+ D C R     
Sbjct: 717 RGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 776

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           KA +  + M   G+ PN   Y    + +H   F+ K A
Sbjct: 777 KANDFFSTMRWWGVCPNLATYN---ILLHG--FSKKQA 809



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 133/282 (47%), Gaps = 18/282 (6%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            R   D    P+  T+  +++ L   G++ +A  +L +M   G     +TYN LL  YC+
Sbjct: 221 FREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCK 280

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + +   A EL+  M     IE DV +YN+ ID       SA A     +MR   I+P ++
Sbjct: 281 KGRYKAAIELIDYMICKG-IEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEV 339

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y TL+  F    +  +A +VF+EM +   +  + V +N L+ G+C +G  EEA R+++ 
Sbjct: 340 TYNTLINGFVKEGKIGVAAQVFNEMSKFD-LSPNCVTYNALIGGHCHVGDFEEALRLLDH 398

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M+  G   N  TYG+L NG+       E   L K + ER  V        +D+       
Sbjct: 399 MEAAGLRLNEVTYGTLLNGLC----KHEKFELAKRLLERMRV--------NDMVVGHIAY 446

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L+D L     +     +A+++V  M + G+ P+   Y  +
Sbjct: 447 TVLIDGLC----KNGMLDEAVQLVGNMYKDGVNPDVITYSSL 484



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 177/433 (40%), Gaps = 63/433 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP     N +L +     + +    LF +M + G  P+V T+N++I  LC   + K    
Sbjct: 195 KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKK-AG 253

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L+++ E G    + T+ +L+  Y   G  + A  ++  M      +CK I E D+  Y
Sbjct: 254 NLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYM------ICKGI-EADVCTY 306

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK----TFAPNSRIYTTLMKGYMNEGRV 229
           +            VF   L  +   +    LL K      +PN   Y TL+ G++ EG++
Sbjct: 307 N------------VFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKI 354

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
               ++   M + + +   P+ VTY  ++      G  + A ++L  M   G+  N +TY
Sbjct: 355 GVAAQVFNEMSKFDLS---PNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTY 411

Query: 290 NILLKGYCQQLQIDKAKELLRE------------------------MADDA--------- 316
             LL G C+  + + AK LL                          M D+A         
Sbjct: 412 GTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYK 471

Query: 317 -KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + PDV++Y+ LI+GF  + +   A      M   G+   KI Y+TL+  F        
Sbjct: 472 DGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTE 531

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A KV+  M  +     D    N+LV   CR G + EA++ +  M   G  PN  TY  + 
Sbjct: 532 AMKVYAVMNCNGH-GADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCII 590

Query: 436 NGISLARKPGEAL 448
           NG      P  A 
Sbjct: 591 NGYGSIGDPLNAF 603



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 138/314 (43%), Gaps = 21/314 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   PN   +  L+ G   EG +     +L   ++ E+N   P  VTY T+++   K G 
Sbjct: 227 KGICPNVGTFNILINGLCVEGNLKKAGNLL---KQMEENGFVPTIVTYNTLLNWYCKKGR 283

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
              A +++  M   G+ A+  TYN+ +   C   +  KA  LL++M  +  I P+ V+YN
Sbjct: 284 YKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEM-ISPNEVTYN 342

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LI+GF+       A   FNEM    ++P  ++Y  L+         + A ++ D M   
Sbjct: 343 TLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHM-EA 401

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             ++++ V +  L+ G C+    E AKR++ERM+ N        Y  L +G+       E
Sbjct: 402 AGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDE 461

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A+ L   +       K+GVN          PD     +L +   R    + A EI+  M 
Sbjct: 462 AVQLVGNM------YKDGVN----------PDVITYSSLINGFCRVGNIKSAKEIICRMY 505

Query: 507 EHGIPPNKTKYKKI 520
             G+  NK  Y  +
Sbjct: 506 RSGLVLNKIIYSTL 519



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 193/493 (39%), Gaps = 44/493 (8%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           V+D      AY  +++     G   + +QL   M++ G  PDV+TY+ +I    R     
Sbjct: 436 VNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIK 495

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD----VCKIIR 166
               ++ R+   G+ L    + +L+  +   G++  A  +   M           C ++ 
Sbjct: 496 SAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLV 555

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSIN--------PSSEPPLLPKTF--------- 209
                D     E +          L+PNSI          S   PL   +F         
Sbjct: 556 SSLCRD-GKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 614

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   Y +L+KG    G + +  + L    R        D V Y T+++   K+G++  
Sbjct: 615 HPSFFTYGSLLKGLCKGGNLVEAKKFL---NRLHYIPGAVDSVMYNTLLAETCKSGNLHE 671

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +  +M +  V  +  TY+ LL G C++ +   A  L         + P+ V Y  L+
Sbjct: 672 AVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLV 731

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           DG         A  FF EM  +G  P  +++  ++ + +   Q   AN  F  M R   V
Sbjct: 732 DGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTM-RWWGV 790

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL- 448
             ++  +N+L+ G+ +   +     +   M   G +P+  T+ SL  G+S +  P   + 
Sbjct: 791 CPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVK 850

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
           LL K I        EG  A          D+   + L +    +   RKA ++V  M   
Sbjct: 851 LLGKMI-------MEGTLA----------DQFTFNILINKYSESGKMRKAFDLVNFMNTL 893

Query: 509 GIPPNKTKYKKIY 521
           G+ P++  Y  I+
Sbjct: 894 GVFPDRDTYNHIF 906



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 112/552 (20%), Positives = 206/552 (37%), Gaps = 117/552 (21%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M R G +P+   +  +++   + GD  P+ +   FD ++K               P    
Sbjct: 574  MSRIGLVPNSITYDCIINGYGSIGD--PLNAFSFFDDMIK-----------CGQHPSFFT 620

Query: 61   YNAVLNA-C--ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
            Y ++L   C   NL + KKFL   +++H      D + YN ++    ++   H  V + +
Sbjct: 621  YGSLLKGLCKGGNLVEAKKFL---NRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFD 677

Query: 118  RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSE 176
            ++++  +     T+ SL+      G    A  +   AM  G      ++    ++  S  
Sbjct: 678  KMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKA 737

Query: 177  NEGDDDDDDEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSR 214
              G        FE+++     P            S    ++               PN  
Sbjct: 738  --GHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLA 795

Query: 215  IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
             Y  L+ G+  +  +   + +   M R+      PD +T+ +++  L K+G  D   ++L
Sbjct: 796  TYNILLHGFSKKQALLRYLSLYSTMMRE---GIFPDKLTFHSLILGLSKSGIPDLGVKLL 852

Query: 275  AEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL-------------------------- 308
             +M   G  A++ T+NIL+  Y +  ++ KA +L                          
Sbjct: 853  GKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKK 912

Query: 309  ---------LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
                     L EM ++  I P    Y  LI+G   + D  GA    +EM A G    +++
Sbjct: 913  SAFRESTVVLHEMLENGVI-PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVA 971

Query: 360  YTTLMKAFALSSQPKLANKVFDEML-------------------RDPRV----------- 389
             + +++      + + A  V D ML                   RD ++           
Sbjct: 972  ESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVME 1031

Query: 390  ----KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
                K+D+VA+N+L+ G C  G    A  + E M+     PN+ TY  L + IS A    
Sbjct: 1032 LCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLI 1091

Query: 446  EALLLWKEIKER 457
            +   L  +++ER
Sbjct: 1092 QGEKLLTDLQER 1103


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/486 (22%), Positives = 213/486 (43%), Gaps = 43/486 (8%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQM--HEFGAKPDVLTYNVMIKLCARAS 107
           + + ++PDT A+N V+ AC   G     L +  +M   E    PD  +YNV+I    R+ 
Sbjct: 149 VAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSG 208

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRR------- 159
           +    + V + +++MG+     T+ +++  +V  GDLE    +  Q + +G +       
Sbjct: 209 KGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYN 268

Query: 160 ----DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR- 214
                +C+  R  +      E        D     +L + +  + E   +   FA + + 
Sbjct: 269 VLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKK 328

Query: 215 -----IYTT--LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
                 YT   L+ G   +G+V+   ++   +         P  V Y T+++   +   +
Sbjct: 329 GVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVH---TGLVPTTVIYNTLINGYCQVRDL 385

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             A  +  +M    +  + ITYN L+ G C+   + KA++L+ EM + + ++P V ++N 
Sbjct: 386 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM-EKSGVDPSVETFNT 444

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LID +          T  ++M+ +GI    IS+ +++KAF  + +   A  + D+M+   
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD 504

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            V  +   +N +++ Y   G  E+A  ++E+MK +G   ++ TY  L  G+  + +  EA
Sbjct: 505 -VAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEA 563

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             L   ++ +                 L+PD    + +   C       KALE++  M +
Sbjct: 564 EELIYTLRNQ----------------GLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 508 HGIPPN 513
           +GI P 
Sbjct: 608 YGIRPT 613



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 120/515 (23%), Positives = 217/515 (42%), Gaps = 66/515 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD---------------DGPVESVKLFDVVVK---RV 42
           ++ +G  P   AW+ VV    A+GD                 P      ++VV+    R 
Sbjct: 148 LVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRS 207

Query: 43  RKFSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
            K SD   V D        P+   YN +++     G  +   +L DQM   G KP+V+TY
Sbjct: 208 GKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTY 267

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE-----IAETIV 151
           NV++    R  R      +++ +    +     T+  L       G+ +      AE++ 
Sbjct: 268 NVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLK 327

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           + +  G    C I+     +D      G      +VFE L+   +              P
Sbjct: 328 KGVMLGAY-TCSILLNGLCKD------GKVAKAKQVFEMLVHTGL-------------VP 367

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
            + IY TL+ GY    +V D         + +     PDH+TY  +++ L K   + +A 
Sbjct: 368 TTVIYNTLINGYC---QVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 424

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            ++ EM + GV  +  T+N L+  Y    Q++K   +L +M     I+ DV+S+  ++  
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKG-IKSDVISFGSVVKA 483

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F        A+   ++M  + +AP    Y +++ A+  S   + A  + ++M ++  V  
Sbjct: 484 FCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKM-KNSGVSA 542

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            IV +N+L++G CR   ++EA+ +I  ++  G  P+V +Y ++ +         +AL L 
Sbjct: 543 SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELL 602

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           +E+       K G+       P L+    L+ ALA
Sbjct: 603 QEM------NKYGIR------PTLRTCHTLVSALA 625



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 186/448 (41%), Gaps = 46/448 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P+V  ++ ++S L  +G              +   R   D        PD   
Sbjct: 255 MLHDGPKPNVVTYNVLLSGLCRTGR-------------MDETRALMDEMASHSMLPDGFT 301

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ + +     G+ +  L LF +  + G      T ++++    +  +      V E ++
Sbjct: 302 YSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLV 361

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRD----------VCKIIREL 168
             G+      + +L+  Y    DL  A  I + M  R  R D          +CK+    
Sbjct: 362 HTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 421

Query: 169 DLEDYSSENEGDDDDDD-EVFEKLLPNSINPSSEPPLLPKTFAPNSRI-----------Y 216
             ED   E E    D   E F  L    I+       L K F   S +           +
Sbjct: 422 KAEDLVMEMEKSGVDPSVETFNTL----IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISF 477

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            +++K +   G++ + V +L  M  ++     P+   Y +++ A +++G  ++A  ++ +
Sbjct: 478 GSVVKAFCKNGKIPEAVAILDDMIYKD---VAPNAQVYNSIIDAYIESGDTEQALLLVEK 534

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   GV A+ +TYN+LLKG C+  QID+A+EL+  + +   + PDVVSYN +I       
Sbjct: 535 MKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG-LRPDVVSYNTIISACCNKG 593

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           D+  AL    EM   GI PT  +  TL+ A A + +      ++ +ML    V+     +
Sbjct: 594 DTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHK-NVEPSSSIY 652

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGF 424
            ++V+ Y R     +   + + M E G 
Sbjct: 653 GIMVDAYVRCENDSKVASLKKEMSEKGI 680



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 143/339 (42%), Gaps = 64/339 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RASRKHLL 112
           P T  YN ++N    +   +    +F+QM     +PD +TYN +I  LC     ++   L
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 426

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           V  +E+    G+   + TF +L+ AY   G LE   T++  M++      K I+  D+  
Sbjct: 427 VMEMEK---SGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQ------KGIKS-DVIS 476

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPL---LPKTFAPNSRIYTTLMKGYMNEGRV 229
           + S           V +    N   P +   L   + K  APN+++Y +++  Y+  G  
Sbjct: 477 FGS-----------VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESG-- 523

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            DT + L  + + +++      VTY  ++  L ++  +D A +++  +   G+  + ++Y
Sbjct: 524 -DTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSY 582

Query: 290 NILLKGYCQQLQIDKAKELLREMAD----------------------------------D 315
           N ++   C +   DKA ELL+EM                                     
Sbjct: 583 NTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLH 642

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             +EP    Y I++D ++  ++ +   +   EM  +GIA
Sbjct: 643 KNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 201/461 (43%), Gaps = 48/461 (10%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR--KHLLVFVLE 117
            YNA++ ACA     +K L L  +M + G + D + Y+++I+   R ++    +L  + +
Sbjct: 201 TYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYK 260

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-----QAMREGRRDVCKIIRELDLED 172
            I    + L +     ++  +   GD   A  ++       +      +  II  L    
Sbjct: 261 EIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISAL---- 316

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               N G   + + +FE+L  + I P              ++ Y  L+KGY+  G + D 
Sbjct: 317 ---ANSGRTLEAEALFEELRQSGIKP-------------RTKAYNALLKGYVKTGPLKDA 360

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             M+  M   E     PD  TY+ ++ A V AG  + AR VL EM    V  N   ++ L
Sbjct: 361 ELMVSEM---EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRL 417

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L GY  + +  K  ++L+EM     ++PD   YN++ID F   +    A+T F+ M + G
Sbjct: 418 LAGYRDRGEWQKTFQVLKEM-KSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 476

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P ++++ TL+       +  +A ++F+ M R   +      +N+++  Y      ++ 
Sbjct: 477 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPC-ATTYNIMINSYGDQERWDDM 535

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           KR++ +MK  G  PNV T+ +L +    + +  +A+   +E+K                 
Sbjct: 536 KRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKS---------------- 579

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
             LKP   + +AL +   +     +A+     M   G+ P+
Sbjct: 580 VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPS 620



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 116/514 (22%), Positives = 203/514 (39%), Gaps = 47/514 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + GY      +S V+  L            K+  V+++R+ K  + D +   + D   
Sbjct: 225 MRQDGYQSDFVNYSLVIQSLTRCN--------KIDSVMLQRLYKEIERDKL---ELDVQL 273

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++   A  G P + LQL       G      T   +I   A + R      + E + 
Sbjct: 274 VNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELR 333

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI      + +L+  YV  G L+ AE +V  M   +R V        L   +  N G 
Sbjct: 334 QSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEME--KRGVSPDEHTYSLLIDAYVNAGR 391

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +    V +++    +              PNS +++ L+ GY + G    T ++L  M+
Sbjct: 392 WESARIVLKEMETGDVQ-------------PNSFVFSRLLAGYRDRGEWQKTFQVLKEMK 438

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD   Y  V+    K   +D A      M   G+  +R+T+N L+  +C+  
Sbjct: 439 ---SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHG 495

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +   A+E+   M     + P   +YNI+I+ +   +          +M+++GI P  +++
Sbjct: 496 RHIVAEEMFEAMERRGCL-PCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTH 554

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTL+  +  S +   A +  +EM +   +K     +N L+  Y + GL E+A      M 
Sbjct: 555 TTLVDVYGKSGRFNDAIECLEEM-KSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT 613

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
            +G  P++    SL N     R+  EA  + + +KE       GV          KPD  
Sbjct: 614 SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKE------NGV----------KPDVV 657

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
               L    +R   F+K   +   M   G  P++
Sbjct: 658 TYTTLMKALIRVDKFQKVPGVYEEMIMSGCKPDR 691



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 109/271 (40%), Gaps = 55/271 (20%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA--KELL 309
           +TY  ++ A  +   +++A  +++ M + G  ++ + Y+++++   +  +ID    + L 
Sbjct: 200 LTYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLY 259

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           +E+  D K+E DV   N +I GF    D + AL      +A G++    +  +++ A A 
Sbjct: 260 KEIERD-KLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALAN 318

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           S                                    G   EA+ + E ++++G  P   
Sbjct: 319 S------------------------------------GRTLEAEALFEELRQSGIKPRTK 342

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
            Y +L  G        +A L+  E+++R      GV+          PDE     L D  
Sbjct: 343 AYNALLKGYVKTGPLKDAELMVSEMEKR------GVS----------PDEHTYSLLIDAY 386

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           V A  +  A  ++  ME   + PN   + ++
Sbjct: 387 VNAGRWESARIVLKEMETGDVQPNSFVFSRL 417


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 184/438 (42%), Gaps = 58/438 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P T  +N V+    N    K  + LF +M + G  PD  TYN++I  LC R   +  L  
Sbjct: 350 PSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREAL-N 407

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + E++ E G+   + T+ SL+  Y   G ++ A  +   M  G+     ++    L    
Sbjct: 408 LWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEM-PGKGFTPNVVTYTTLMK-G 465

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             N+   D    +  ++  N +             + N   Y TL+ G    GRV +   
Sbjct: 466 HINKAAFDKAYALLAEMKQNGV-------------SCNDYTYNTLINGLCVVGRVCEVGE 512

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ML   +R E     P  +TY ++++  +KAG M  A  V  +M   G+P N +TY   + 
Sbjct: 513 ML---KRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFID 569

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF--------------ILIDDS-- 338
           GYC+    D A ++L ++     + PD+ +YN LI GF              +++ D   
Sbjct: 570 GYCKTSCCDLALKMLNDVRCKG-LRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLL 628

Query: 339 -------------------AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
                                AL  + +M   GI     +YTTL+  F+       A K+
Sbjct: 629 PNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKL 688

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           + EM+    +  D + +  L  G CR G +++A+++++ M      PNV  Y  L NG  
Sbjct: 689 YSEMVAKGNIP-DHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYL 747

Query: 440 LARKPGEALLLWKEIKER 457
              K  EA  L  E+ ER
Sbjct: 748 RNGKLQEAFRLHDEMLER 765



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 203/451 (45%), Gaps = 42/451 (9%)

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV-LTYNVMI 100
           +RK  D   V    P    +N+V++     G+ ++ L + D++   G K  V L   +M 
Sbjct: 235 LRKMQDAGFV----PWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMH 290

Query: 101 KLC-ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
             C  R  RK L +F  E  L  G+     T+  L+      G  E A  + + MR+   
Sbjct: 291 GYCLQREVRKALDIF--EETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRD--H 346

Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI---- 215
            +     E ++      N+    D   +F+++  + I  +    +L        +I    
Sbjct: 347 GLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREAL 406

Query: 216 -----------------YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                            Y +L+  Y   G + + V++   M         P+ VTYTT++
Sbjct: 407 NLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEM---PGKGFTPNVVTYTTLM 463

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
              +   + D+A  +LAEM + GV  N  TYN L+ G C   ++ +  E+L+    +  +
Sbjct: 464 KGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFV 523

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            P  ++YN +I+GFI       A   + +M A+GI P  ++YT+ +  +  +S   LA K
Sbjct: 524 -PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALK 582

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           + ++ +R   ++ DI A+N L+ G+C+ G +  A +++  M ++G  PN++ Y S   G 
Sbjct: 583 MLND-VRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGY 641

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADS 469
              +   EAL L++++       KEG++ D+
Sbjct: 642 KNLKMMEEALRLYEKM------IKEGIDLDT 666



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 199/464 (42%), Gaps = 53/464 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G LP    ++ V+  L            KL+   V   ++ +D  I     PD   YN +
Sbjct: 347 GLLPSTNEFNMVIKGLLND---------KLWKDAVSLFKEMADSGI-----PDAFTYNIL 392

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLVFVLERILEMG 123
           ++      K ++ L L+++M+E G KP ++TY+ +++  C        +    E +   G
Sbjct: 393 IHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTE-MPGKG 451

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIRELDLE 171
            T  + T+ +L+  ++     + A  ++  M++                +C + R  ++ 
Sbjct: 452 FTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVG 511

Query: 172 DYSS--ENEGDDDDDDEVFEKLLPNSI-NPSSEPPLLPKTFA-----------PNSRIYT 217
           +     E EG       V   +  NSI N   +  ++   FA           PN   YT
Sbjct: 512 EMLKRFETEG------FVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYT 565

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           + + GY         ++ML  +R +      PD   Y +++    + G+M  A QVL  M
Sbjct: 566 SFIDGYCKTSCCDLALKMLNDVRCK---GLRPDIAAYNSLIFGFCQEGNMSHALQVLVLM 622

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            + G+  N   YN  + GY     +++A  L  +M  +  I+ D  +Y  LIDGF    +
Sbjct: 623 LKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEG-IDLDTATYTTLIDGFSKDGN 681

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              AL  ++EM A+G  P  I++T L      +     A K+ DEM R   ++ +++ +N
Sbjct: 682 VTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNR-LDIRPNVLMYN 740

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           ML+ GY R G ++EA R+ + M E    P+  TY  L    SL 
Sbjct: 741 MLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKSLG 784



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 172/398 (43%), Gaps = 21/398 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   ++ V+ AC   G     ++LFD+M     +PD    +V I    +    +  + VL
Sbjct: 176 DAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVL 235

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            ++ + G      TF S+V   V  G +E A  I   +    + +  ++    +  Y  +
Sbjct: 236 RKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQ 295

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            E     D  +FE+ L + +              P    YT L++G   EG       + 
Sbjct: 296 REVRKALD--IFEETLRDGL-------------VPTDVTYTVLIRGCTEEGMPEKAYELC 340

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             MR   D+   P    +  V+  L+       A  +  EM   G+P +  TYNIL+   
Sbjct: 341 RQMR---DHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWL 396

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           CQ+ +I +A  L  +M ++  ++P +V+Y+ L+  + +      A+  + EM  +G  P 
Sbjct: 397 CQRRKIREALNLWEKM-NETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPN 455

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            ++YTTLMK     +    A  +  EM +   V  +   +N L+ G C +G V E   ++
Sbjct: 456 VVTYTTLMKGHINKAAFDKAYALLAEM-KQNGVSCNDYTYNTLINGLCVVGRVCEVGEML 514

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +R +  GF P   TY S+ NG   A   G A  +++++
Sbjct: 515 KRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 141/317 (44%), Gaps = 29/317 (9%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN ++N    +G+  +  ++  +    G  P  +TYN +I    +A        V +++
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE--- 176
              GI   + T+ S +  Y      ++A  ++  +R      CK +R  D+  Y+S    
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVR------CKGLRP-DIAAYNSLIFG 605

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              EG+     +V   +L + +              PN  +Y + + GY N   + + +R
Sbjct: 606 FCQEGNMSHALQVLVLMLKDGL-------------LPNISVYNSFITGYKNLKMMEEALR 652

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M ++  +    D  TYTT++    K G++  A ++ +EM   G   + IT+  L  
Sbjct: 653 LYEKMIKEGIDL---DTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTH 709

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C+   ID A++LL EM +   I P+V+ YN+LI+G++       A    +EM  R I 
Sbjct: 710 GLCRNGDIDDARKLLDEM-NRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIM 768

Query: 355 PTKISYTTLMKAFALSS 371
           P   +Y  L+   +L S
Sbjct: 769 PDDTTYDILVGMKSLGS 785



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 143/343 (41%), Gaps = 35/343 (10%)

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           EG  DD   +F+++      P+SE         P+ R+ +  +       ++ D  R L 
Sbjct: 190 EGMYDDAVRLFDEM------PASE-------IEPDQRVCSVAIASLC---KLRDANRALL 233

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            +R+ +D    P   T+ +VV  LVK G M+ A  +  E+   G   + +    L+ GYC
Sbjct: 234 VLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYC 293

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
            Q ++ KA ++  E   D  +  D V+Y +LI G         A     +MR  G+ P+ 
Sbjct: 294 LQREVRKALDIFEETLRDGLVPTD-VTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPST 352

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             +  ++K        K A  +F EM  D  +  D   +N+L+   C+   + EA  + E
Sbjct: 353 NEFNMVIKGLLNDKLWKDAVSLFKEM-ADSGIP-DAFTYNILIHWLCQRRKIREALNLWE 410

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           +M E G  P + TY SL     +     EA+ L+ E+  +                   P
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGK----------------GFTP 454

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +      L    +  A F KA  ++A M+++G+  N   Y  +
Sbjct: 455 NVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTL 497



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 134/284 (47%), Gaps = 21/284 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN+++N     G       ++ QM   G  P+++TY   I    + S   L + +
Sbjct: 524 PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKM 583

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYS 174
           L  +   G+   +  + SL+  +   G++  A + +V  +++G      +     +  Y 
Sbjct: 584 LNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSF-ITGY- 641

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N    ++   ++EK++   I+              ++  YTTL+ G+  +G V+  ++
Sbjct: 642 -KNLKMMEEALRLYEKMIKEGIDL-------------DTATYTTLIDGFSKDGNVTFALK 687

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M  +    + PDH+T+T +   L + G +D AR++L EM R+ +  N + YN+L+ 
Sbjct: 688 LYSEMVAK---GNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLIN 744

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           GY +  ++ +A  L  EM  + KI PD  +Y+IL+    L  DS
Sbjct: 745 GYLRNGKLQEAFRLHDEML-ERKIMPDDTTYDILVGMKSLGSDS 787



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 70/333 (21%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  + T +++   ++ S   A  +LAEM   G P +   ++++++   ++   D A  L
Sbjct: 140 PDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGMYDDAVRL 199

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY-------- 360
             EM   ++IEPD    ++ I     + D+  AL    +M+  G  P   ++        
Sbjct: 200 FDEMP-ASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLV 258

Query: 361 ---------------------------TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                                      TTLM  + L  + + A  +F+E LRD  V  D 
Sbjct: 259 KGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTD- 317

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V + +L+ G    G+ E+A  +  +M+++G  P+   +  +  G+   +   +A+ L+KE
Sbjct: 318 VTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKE 377

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +            ADS +     PD    + L     +    R+AL +   M E G+ P 
Sbjct: 378 M------------ADSGI-----PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPY 420

Query: 514 KTKYK----------------KIYVEMHSRMFT 530
              Y                 K+Y EM  + FT
Sbjct: 421 IVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFT 453


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 178/396 (44%), Gaps = 35/396 (8%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
           +L   M +FG  PD+   N+ +    + +R H  +  LE +   G    + T+ ++V   
Sbjct: 252 RLLADMDKFGCFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCL 311

Query: 139 VGFGDL-EIAETIVQAMREGRR-DV--CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPN 194
                  E  E   + +R G + D+  C ++                D  DE FE  L  
Sbjct: 312 CDNKQFAEAVELWEEMVRRGLKPDIVACGVL---------IFGLCKSDKVDEAFELALR- 361

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
                    +L      N  IY  L+ G++  G ++   +++  MR    N   PD VTY
Sbjct: 362 ---------MLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMR---TNGCEPDVVTY 409

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMA 313
              ++     G +  A +++ EM   G V  +R +YN +LKG C+  Q+D+A   + +  
Sbjct: 410 NIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHM 469

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
           +      D+VS NILID F      + AL  F EM  +GI    ++Y TL+         
Sbjct: 470 EVGGF-CDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYY 528

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
            LA ++F++ML+  RV  ++  +N+++   C+ G  E+A++I  +M +    P++ T+ +
Sbjct: 529 YLAEEIFEQMLK-ARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNT 587

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           L   +    +  EA+ L++++  R      G+  DS
Sbjct: 588 LIYWLGKCSRAIEAIDLFRDMTAR------GIEPDS 617



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 170/426 (39%), Gaps = 62/426 (14%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRK 109
           +  + PD   Y  V+    +  +  + ++L+++M   G KPD++   V+I  LC      
Sbjct: 294 IRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVD 353

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                 L R+L + + L +  + +L++ ++  G +  A  I+  MR              
Sbjct: 354 EAFELAL-RMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTN------------ 400

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                                          EP ++          Y   +  Y N G +
Sbjct: 401 -----------------------------GCEPDVVT---------YNIRLNHYCNTGMI 422

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            +  +++  M  +     +PD  +Y  ++  L KA  +DRA   +++   +G   + ++ 
Sbjct: 423 KEAEKLIEEM--EMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSC 480

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           NIL+  +C+  ++  A +L +EM     I+ D V+Y  LI+G   +     A   F +M 
Sbjct: 481 NILIDAFCKAKKVSSALKLFKEMGYKG-IQADAVTYGTLINGLYGVGYYYLAEEIFEQML 539

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              + P    Y  ++     + Q + A K+F +M++   V  DI+ +N L+    +    
Sbjct: 540 KARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQ-KEVSPDIITFNTLIYWLGKCSRA 598

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            EA  +   M   G  P+  T+  L +G+    K  +A  +W+ + E       G+  D 
Sbjct: 599 IEAIDLFRDMTARGIEPDSLTFRYLISGLLEEGKATQAYEVWEYMLE------NGIILDR 652

Query: 470 DLPPPL 475
           D+   L
Sbjct: 653 DVSDRL 658



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 29/293 (9%)

Query: 250 DHVTYTT--VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           DH  +    VVS L    +     + L  +   GV  +R  Y ILL GY +  + D    
Sbjct: 123 DHTQFAIAYVVSLLFVDSNFFLLSEFLERVRSQGVALHRSLYRILLSGYVRAGKFDSVIH 182

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT--FFNEMRARGIAPTKISYTTLMK 365
              EM      E  V  YN  I   +L+ +    L   +++    +G   T  +Y+  + 
Sbjct: 183 TFDEMVTSGCREFGV-DYNRFIG--VLVKNCCFDLVEKYYSVALDKGFCLTSFTYSRWIS 239

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           A   S + +L  ++  +M +      DI A N+ V+  C+   + +A + +E M   G  
Sbjct: 240 ALCQSERIELVERLLADMDKFGCFP-DIWACNIYVDCLCKHNRLHDALKTLENMWIRGTN 298

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER--------CEVKKEGVNADSD------- 470
           P+V TY ++   +   ++  EA+ LW+E+  R        C V   G+   SD       
Sbjct: 299 PDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGVLIFGL-CKSDKVDEAFE 357

Query: 471 -----LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                L   L+ +  + +AL    +R+    KA +I++ M  +G  P+   Y 
Sbjct: 358 LALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNGCEPDVVTYN 410


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 192/468 (41%), Gaps = 63/468 (13%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P   ++STV+  L    D     ++ L   +VK+    S         P+  +YN V
Sbjct: 185 GVEPDTISYSTVLKSLCE--DSRSQRALDLLHTMVKKSGGCS---------PNVVSYNTV 233

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC-ARASRKHLLVFVLERILEM 122
           ++     G+  K   LF +M + G  PDV+TY+  I  LC ARA  K  LV  L +++  
Sbjct: 234 IHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELV--LRQMISN 291

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G      T+  ++  Y   G  +    + + M   RR +   I   +    S    G   
Sbjct: 292 GFEPDKVTYNCMIHGYSILGQWKETAGMFREMT--RRGLMPDIFTCNSYMSSLCKHGKSK 349

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           +  E F+ +               K   P+   Y+ L+ GY  EG V D + +  +M   
Sbjct: 350 EAAEFFDSMAA-------------KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGN 396

Query: 243 EDNASH--------------------------------PDHVTYTTVVSALVKAGSMDRA 270
              A H                                PD  TY TV++A  + G +  A
Sbjct: 397 GIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADA 456

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                +M  +G+  + I YN L++G+C    + KAKEL+ EM       P+ V +N +I+
Sbjct: 457 MDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIIN 516

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A   F+ +   G  P  I++ +L+  + L  + + A  V D M+    ++
Sbjct: 517 SLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMI-SVGIE 575

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            D+V ++ L++GYCR G +++   +   M   G  P   TYG + +G+
Sbjct: 576 PDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGL 623



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 129/568 (22%), Positives = 220/568 (38%), Gaps = 104/568 (18%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+  DGP  +V LF+ +    R+ + P +   + P    YN +++ C    +P     L
Sbjct: 88  SATCRDGPSLAVALFNRIC---REEARPRV---ALPTVCTYNILMDCCCRAHRPTVGFAL 141

Query: 81  FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL-ERILEMGI---TLCMTT-FQSLV 135
           F +  + G K DV+  N+++K    A R    V VL  R+ E+G+   T+  +T  +SL 
Sbjct: 142 FGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLC 201

Query: 136 AAYVGFGDLEIAETIVQA------------------MREGR-RDVCKIIREL-------D 169
                   L++  T+V+                    REG     C +  E+       D
Sbjct: 202 EDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPD 261

Query: 170 LEDYSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           +  YSS  +        D  + V  +++ N              F P+   Y  ++ GY 
Sbjct: 262 VVTYSSYIDALCKARAMDKAELVLRQMISNG-------------FEPDKVTYNCMIHGYS 308

Query: 225 NEGRVSDTVRMLGAMRRQ--------------------------------EDNASHPDHV 252
             G+  +T  M   M R+                                      PD V
Sbjct: 309 ILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLV 368

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           TY+ ++      G +     +   M   G+ A+   YNIL+  Y ++  +D+A  +  +M
Sbjct: 369 TYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQM 428

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            +   + PD  +Y  +I  F  +   A A+  FN+M A G+ P  I Y +L++ F +   
Sbjct: 429 QERG-VMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGN 487

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A ++  EM+     + + V +N ++   C+ G V EA+ I + +   G  P+V T+ 
Sbjct: 488 LVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFN 547

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           SL +G  L  K  +A                GV  D+ +   ++PD     AL D   R 
Sbjct: 548 SLIDGYGLVGKMEKAF---------------GV-LDAMISVGIEPDVVTYSALLDGYCRN 591

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 L +   M   G+ P    Y  I
Sbjct: 592 GRIDDGLILFREMLSKGVKPTTITYGII 619



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 182/402 (45%), Gaps = 25/402 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N+ +++    GK K+  + FD M   G KPD++TY+V++   A       ++ +
Sbjct: 330 PDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNL 389

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   GI    + +  L+ AY   G ++ A  I   M+E  R V            + 
Sbjct: 390 FNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQE--RGVMPDAWTYGTVIAAF 447

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D  + F +++   + P             ++ +Y +L++G+   G +     +
Sbjct: 448 SRMGRLADAMDKFNQMIAMGLKP-------------DTIVYNSLIQGFCMHGNLVKAKEL 494

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M  +      P+ V + +++++L K G +  A+ +   +  IG   + IT+N L+ G
Sbjct: 495 ISEMMSR--GIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDG 552

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           Y    +++KA  +L  M     IEPDVV+Y+ L+DG+     IDD    L  F EM ++G
Sbjct: 553 YGLVGKMEKAFGVLDAMIS-VGIEPDVVTYSALLDGYCRNGRIDD---GLILFREMLSKG 608

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + PT I+Y  ++       +   A K+  EM+ +    +DI    +++ G CR    +EA
Sbjct: 609 VKPTTITYGIILHGLFNDGRTVGAKKMCHEMI-ESGTTMDISTCGIILGGLCRNNCDDEA 667

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             + +++       N+A   ++ + +   RK  EA  L+  I
Sbjct: 668 IALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSI 709



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 177/435 (40%), Gaps = 34/435 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G +P +   ++ +S L   G               K   +F D       KPD   
Sbjct: 323 MTRRGLMPDIFTCNSYMSSLCKHGKS-------------KEAAEFFDSMAAKGHKPDLVT 369

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +L+  A  G     L LF+ M   G   D   YN++I    +       + +  ++ 
Sbjct: 370 YSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQ 429

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           E G+     T+ +++AA+   G L  A +   Q +  G +         D   Y+S  +G
Sbjct: 430 ERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKP--------DTIVYNSLIQG 481

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                + V  K L + +     P        PN+  + +++     EGRV +   +   +
Sbjct: 482 FCMHGNLVKAKELISEMMSRGIP-------RPNTVFFNSIINSLCKEGRVVEAQDIFDLV 534

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                    PD +T+ +++      G M++A  VL  M  +G+  + +TY+ LL GYC+ 
Sbjct: 535 IHI---GERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRN 591

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            +ID    L REM     ++P  ++Y I++ G      + GA    +EM   G      +
Sbjct: 592 GRIDDGLILFREMLSKG-VKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIST 650

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
              ++     ++    A  +F + L    VK +I   N +++   ++   EEA  + + +
Sbjct: 651 CGIILGGLCRNNCDDEAIALFKK-LGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSI 709

Query: 420 KENGFYPNVATYGSL 434
              G  PN +TYG +
Sbjct: 710 SATGLVPNASTYGVM 724


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 200/458 (43%), Gaps = 36/458 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG LP+V ++  +++ L  +G+              K      +  I    KP+   
Sbjct: 444 MRNSGILPNVYSYGIMINGLCQNGES-------------KEAGNLLEEMISEGLKPNAFM 490

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++   +  G      +  ++M +    PD+  YN +IK  +   R         ++ 
Sbjct: 491 YAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQ 550

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSENEG 179
           + G+     T+  L+  Y   G+LE A+ ++ Q +  G +       +L LE Y   N+ 
Sbjct: 551 KRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDL-LEGYFKSND- 608

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                   +EK+  +SI  S    +L     P++ IY  +++   N  R  +       +
Sbjct: 609 --------YEKV--SSILQS----MLGSGDKPDNHIYGIVIR---NLSRSENMEVAFMVL 651

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
              E N   PD   Y++++S L K   M++A  +L EM + G+    + YN L+ G+C+ 
Sbjct: 652 TEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRS 711

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             I +A+ +   +     + P+ V+Y  LIDG     D   A   + EM  RGIAP    
Sbjct: 712 GDISRARNVFDSILAKGLV-PNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFV 770

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L    + ++  + A  + +EM    R   ++  +N LV G+C+ G ++E ++++  M
Sbjct: 771 YNVLATGCSDAADLEQALFLTEEMFN--RGYANVSLFNTLVHGFCKRGKLQETEKLLHVM 828

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +    PN  T   + +    A K GEA  ++ E++++
Sbjct: 829 MDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQK 866



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 128/577 (22%), Positives = 232/577 (40%), Gaps = 103/577 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y A++N      + K+   L D+M   G KP+++ Y  ++    +  +      +
Sbjct: 311 PDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDI 370

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ ++  G+      + +L+      G L  A  +++ M        K+    D   Y+ 
Sbjct: 371 LKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEM-------IKVGLRPDTFTYNP 423

Query: 176 ENEG--DDDDDDEVFEKL--------LPN------SINPSSE-----------PPLLPKT 208
             +G     D D  FE L        LPN       IN   +             ++ + 
Sbjct: 424 LMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEG 483

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN+ +Y  L+ G+  EG +S     L  M +      HPD   Y +++  L   G M+
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKAN---VHPDLFCYNSLIKGLSTVGRME 540

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +  A++ + G+  +  TY+ L+ GYC+   ++KA +LLR+M +   ++P+  +Y  L
Sbjct: 541 EAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSG-LKPNADTYTDL 599

Query: 329 IDGFILIDD------------SAG-----------------------ALTFFNEMRARGI 353
           ++G+   +D             +G                       A     E+   G+
Sbjct: 600 LEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGL 659

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P    Y++L+      +  + A  + DEM ++  ++  IV +N L++G+CR G +  A+
Sbjct: 660 VPDLHIYSSLISGLCKIADMEKAVGLLDEMAKE-GLEPGIVCYNALIDGFCRSGDISRAR 718

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC--------EVKKEGV 465
            + + +   G  PN  TY +L +G        +A  L+KE+ +R          V   G 
Sbjct: 719 NVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGC 778

Query: 466 NADSDLPPPLKPDEELLD------ALADICVRAAFFRKALE----IVACMEEHGIPPNKT 515
           +  +DL   L   EE+ +      +L +  V     R  L+    ++  M +  I PN  
Sbjct: 779 SDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQ 838

Query: 516 KYKKIYVEMH--------SRMFT---SKHASQARQDR 541
             +K+  E           R+F     K ASQ+  DR
Sbjct: 839 TVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATDR 875



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 40/281 (14%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS-HPDHVTYTTVVSALVKAGSM 267
            AP  R    L+K  +     +D + +L  ++   + A   PD  TY+T + A  KA   
Sbjct: 204 LAPTRRCCNGLLKDLLR----ADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDF 259

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD------------- 314
           D A++V  EM R     N +TYN+++ G C+   +++A     EM D             
Sbjct: 260 DAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGAL 319

Query: 315 -----------DAK----------IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
                      +AK          ++P++V Y  L+DGF+    +A A     EM + G+
Sbjct: 320 MNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGV 379

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P KI Y  L++      Q   A+K+  EM++   ++ D   +N L++G+ +    + A 
Sbjct: 380 QPNKIMYDNLIRGLCKIGQLGRASKLLKEMIK-VGLRPDTFTYNPLMQGHFQQHDKDGAF 438

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            ++  M+ +G  PNV +YG + NG+    +  EA  L +E+
Sbjct: 439 ELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEM 479



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 12/228 (5%)

Query: 235 MLGAMRRQEDNASH------PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +L +++R   +  H      P       +V    K GS+  A QV+  M  +G+   R  
Sbjct: 151 VLASIQRAIQDTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRC 210

Query: 289 YNILLKGYCQQLQIDKAKEL--LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            N LLK     L+ D  + L  L+   + A I PDV +Y+  I+      D   A   F 
Sbjct: 211 CNGLLK---DLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFE 267

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EMR R  A  +++Y  ++     S   + A    +EM+ D  +  D   +  L+ G C+ 
Sbjct: 268 EMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV-DYGLSPDAFTYGALMNGLCKG 326

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             ++EAK +++ M  +G  PN+  YG+L +G     K  EA  + KE+
Sbjct: 327 SRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEM 374


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 180/377 (47%), Gaps = 23/377 (6%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRK--HLLVFVLERILEMGITLCMTTFQSLVAA 137
           LF +M + G +  V+TY V+I    R   K  H L  +LE + E G       +  LV  
Sbjct: 4   LFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALR-LLEVMKESGKKPDEILYNCLVNG 62

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
            V  G LE AE I+  M++ +     +     +++Y+  N G   D  ++F+++      
Sbjct: 63  LVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYA--NAGRLQDCRKLFQEMKD---- 116

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                    K  +PNS  Y  L++GY  +G   + + +   M   +      D  TY   
Sbjct: 117 ---------KGESPNSWTYNALIQGYGRKGLFKEALELYDEM---DGVGCAKDVHTYNIA 164

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           ++   K G ++   ++L EM   GVP +++TYN LL  Y ++    KA E+LREM + A 
Sbjct: 165 IAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTE-AG 223

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
             P++ +YNI++         A A   F  ++++G+ P  ++Y+ ++  +        A 
Sbjct: 224 YRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAA 283

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K++DEM+    +   I+A++ L+E Y   G+ +EA    + M+++G  P+   Y +L + 
Sbjct: 284 KLWDEMIEAGCIPC-IIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDA 342

Query: 438 ISLARKPGEALLLWKEI 454
              A +  EA LL+ E+
Sbjct: 343 YGKAGRCREAELLYFEM 359



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 148/330 (44%), Gaps = 25/330 (7%)

Query: 216 YTTLMKGYMNE-GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           YT ++ GY+ +  ++   +R+L  M+   ++   PD + Y  +V+ LV +G ++ A ++L
Sbjct: 20  YTVIIHGYLRQKSKLDHALRLLEVMK---ESGKKPDEILYNCLVNGLVNSGRLEAAEKIL 76

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M +  V AN +TY  L+K Y    ++   ++L +EM D  +  P+  +YN LI G+  
Sbjct: 77  DDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGE-SPNSWTYNALIQGYGR 135

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-VKVDI 393
                 AL  ++EM   G A    +Y   +  +      +   ++ DEM  D + V  D 
Sbjct: 136 KGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEM--DTKGVPPDQ 193

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L++ Y +     +A  I+  M E G+ PN+ TY  + +     +   EA  L++ 
Sbjct: 194 VTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFEN 253

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +K +  V                P+     A+  +  R   + +A ++   M E G  P 
Sbjct: 254 LKSKGVV----------------PNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPC 297

Query: 514 KTKYKKIYVEMHSRMFTSKHASQARQDRRR 543
              Y  + +E +      + A    QD R+
Sbjct: 298 IIAYSGL-IESYGHHGMYQEALACFQDMRK 326



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 23/251 (9%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYC-QQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           A  +   M + G  A  +TY +++ GY  Q+ ++D A  LL  M +  K +PD + YN L
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGK-KPDEILYNCL 59

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ++G +       A    ++M+   ++   ++YT L+K +A + + +   K+F EM +D  
Sbjct: 60  VNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEM-KDKG 118

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              +   +N L++GY R GL +EA  + + M   G   +V TY      I++A      L
Sbjct: 119 ESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYN-----IAIAMYGKRGL 173

Query: 449 LLWKEIKERC--EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           L   E  ER   E+  +GV           PD+   + L D+  + ++F KA EI+  M 
Sbjct: 174 L---EDMERLLDEMDTKGV----------PPDQVTYNTLLDVYAKKSYFVKAHEILREMT 220

Query: 507 EHGIPPNKTKY 517
           E G  PN   Y
Sbjct: 221 EAGYRPNIWTY 231



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 155/356 (43%), Gaps = 20/356 (5%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  KPD   YN ++N   N G+ +   ++ D M +     +++TY  +IK  A A R   
Sbjct: 47  SGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQD 106

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              + + + + G +    T+ +L+  Y   G  + A  +   M +G     K +   ++ 
Sbjct: 107 CRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEM-DGV-GCAKDVHTYNIA 164

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                  G  +D     E+LL + ++    PP        +   Y TL+  Y    + S 
Sbjct: 165 IAMYGKRGLLED----MERLL-DEMDTKGVPP--------DQVTYNTLLDVY---AKKSY 208

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V+    +R   +    P+  TY  ++S+  K  S+  A Q+   +   GV  N +TY+ 
Sbjct: 209 FVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSA 268

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           +L  Y +     +A +L  EM +   I P +++Y+ LI+ +        AL  F +MR  
Sbjct: 269 MLSLYGRHGLYTEAAKLWDEMIEAGCI-PCIIAYSGLIESYGHHGMYQEALACFQDMRKS 327

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           GI P    YT LM A+  + + + A  ++ EM ++  V  D + + +LV  +   G
Sbjct: 328 GIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVP-DGITYGILVRAFANAG 382



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 18/212 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN +L+  A      K  ++  +M E G +P++ TYN+M+    +         +
Sbjct: 191 PDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQL 250

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +   G+   + T+ ++++ Y   G    A  +   M E     C I     +E Y  
Sbjct: 251 FENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYG- 309

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            + G   +    F+ +  + I              P+++IYT LM  Y   GR  +   +
Sbjct: 310 -HHGMYQEALACFQDMRKSGI-------------VPDTKIYTALMDAYGKAGRCREAELL 355

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              M ++      PD +TY  +V A   AG +
Sbjct: 356 YFEMTKE---GFVPDGITYGILVRAFANAGRL 384



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 19/188 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV-FDEMLRDPRVKVDIVAWNML 399
           A + F  M   G   T ++YT ++  + L  + KL + +   E++++   K D + +N L
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGY-LRQKSKLDHALRLLEVMKESGKKPDEILYNCL 59

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           V G    G +E A++I++ MK++    N+ TY +L    + A +  +   L++E+K++ E
Sbjct: 60  VNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGE 119

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                            P+    +AL     R   F++ALE+   M+  G   +   Y  
Sbjct: 120 ----------------SPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTY-N 162

Query: 520 IYVEMHSR 527
           I + M+ +
Sbjct: 163 IAIAMYGK 170


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 189/409 (46%), Gaps = 22/409 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ VLN   N  K +    LF++M   G   DV TY +M+    +A         
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVC--KIIRELDLED 172
              + E+G T  + T+ +L+ AY+    +  A  + + M  EG    C   I+    L D
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG----CLPNIVTYSALID 596

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF-----APNSRIYTTLMKGYMNEG 227
              +  G  +   ++FE++  +   P  +  +  K +      PN   Y  L+ G+    
Sbjct: 597 GHCK-AGQVEKACQIFERMCGSKDVPDVD--MYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           RV +  ++L AM  +      P+ + Y  ++  L K G +D A++V  EM+  G PA   
Sbjct: 654 RVEEARKLLDAMSME---GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLY 710

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY+ L+  Y +  + D A ++L +M +++   P+VV Y  +IDG   +  +  A      
Sbjct: 711 TYSSLIDRYFKVKRQDLASKVLSKMLENS-CAPNVVIYTEMIDGLCKVGKTDEAYKLMQM 769

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +G  P  ++YT ++  F +  + +   ++ + M     V  + V + +L++  C+ G
Sbjct: 770 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERM-GSKGVAPNYVTYRVLIDHCCKNG 828

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            ++ A  ++E MK+  +  + A Y  +  G +  ++  E+L L  EI +
Sbjct: 829 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFN--KEFIESLGLLDEIGQ 875



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/507 (21%), Positives = 209/507 (41%), Gaps = 69/507 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LV 113
           PDT  Y  +++        ++ +   ++M      P+V+TY+ +  LC   ++K L    
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTL--LCGCLNKKQLGRCK 357

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  ++  G       F SLV AY   GD   A  +++ M +       ++  + +   
Sbjct: 358 RVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI 417

Query: 174 SSENEGDDDDDDEVFEK---------LLPNSINPSSEP-----------------PLLPK 207
             + +  + D  ++ EK         ++ N IN SS                    ++ +
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 477

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
            F P++  Y+ ++    N  ++     +   M+R        D  TYT +V +  KAG +
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR---GGLVADVYTYTIMVDSFCKAGLI 534

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           ++AR+   EM  +G   N +TY  L+  Y +  ++  A EL   M  +  + P++V+Y+ 
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL-PNIVTYSA 593

Query: 328 LIDGFILIDDSAGALTFFNEMRA----------------RGIAPTKISYTTLMKAFALSS 371
           LIDG         A   F  M                      P  ++Y  L+  F  S 
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           + + A K+ D M  +   + + + ++ L++G C++G ++EA+ +   M E+GF   + TY
Sbjct: 654 RVEEARKLLDAMSMEG-CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTY 712

Query: 432 GSLANG-ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
            SL +    + R+   + +L K ++  C              P +    E++D L     
Sbjct: 713 SSLIDRYFKVKRQDLASKVLSKMLENSC-------------APNVVIYTEMIDGLC---- 755

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKY 517
           +     +A +++  MEE G  PN   Y
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTY 782



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 155/367 (42%), Gaps = 78/367 (21%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL------VKA 264
           P+ +I+ +L+  Y   G  S   ++L  M +       P +V Y  ++ ++      +  
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK---CGHMPGYVVYNILIGSICGDKDSLNC 426

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM------------ 312
             +D A +  +EM   GV  N+I  +   +  C   + +KA  ++REM            
Sbjct: 427 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 486

Query: 313 -------ADDAKIE---------------PDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
                   + +K+E                DV +Y I++D F        A  +FNEMR 
Sbjct: 487 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G  P  ++YT L+ A+  + +   AN++F+ ML +  +  +IV ++ L++G+C+ G VE
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP-NIVTYSALIDGHCKAGQVE 605

Query: 411 EAKRIIERM----------------KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +A +I ERM                 +N   PNV TYG+L +G   + +  EA  L   +
Sbjct: 606 KACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM 665

Query: 455 K-ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
             E CE                 P++ + DAL D   +     +A E+   M EHG P  
Sbjct: 666 SMEGCE-----------------PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 708

Query: 514 KTKYKKI 520
              Y  +
Sbjct: 709 LYTYSSL 715



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 195/444 (43%), Gaps = 37/444 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G++P    ++ ++  +    D     +  L D+  K   +     +V + K + ++
Sbjct: 398 MVKCGHMPGYVVYNILIGSICGDKDS---LNCDLLDLAEKAYSEMLAAGVVLN-KINVSS 453

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +   L    + GK +K   +  +M   G  PD  TY+ ++     AS+  L   + E + 
Sbjct: 454 FTRCL---CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMK 510

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + T+  +V ++   G +E A      MRE       +     +  Y    +  
Sbjct: 511 RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKV- 569

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV----RML 236
               +E+FE +L       SE  L      PN   Y+ L+ G+   G+V        RM 
Sbjct: 570 -SYANELFETML-------SEGCL------PNIVTYSALIDGHCKAGQVEKACQIFERMC 615

Query: 237 GA---------MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           G+          ++ +DN+  P+ VTY  ++    K+  ++ AR++L  M+  G   N+I
Sbjct: 616 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQI 675

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            Y+ L+ G C+  ++D+A+E+  EM++       + +Y+ LID +  +     A    ++
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHG-FPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M     AP  + YT ++       +   A K+  +M+ +   + ++V +  +++G+  +G
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM-QMMEEKGCQPNVVTYTAMIDGFGMIG 793

Query: 408 LVEEAKRIIERMKENGFYPNVATY 431
            +E    ++ERM   G  PN  TY
Sbjct: 794 KIETCLELLERMGSKGVAPNYVTY 817



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 184/458 (40%), Gaps = 68/458 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIV------SD 53
           ML  G LP++  +S ++     +G    VE + ++F+ +    +   D D+       + 
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQ---VEKACQIFERMCGS-KDVPDVDMYFKQYDDNS 634

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +P+   Y A+L+      + ++  +L D M   G +P+ + Y+ +I    +  +     
Sbjct: 635 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 694

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V   + E G    + T+ SL+  Y                        K+ R+      
Sbjct: 695 EVKTEMSEHGFPATLYTYSSLIDRYF-----------------------KVKRQ------ 725

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                   D   +V  K+L NS              APN  IYT ++ G    G+  +  
Sbjct: 726 --------DLASKVLSKMLENSC-------------APNVVIYTEMIDGLCKVGKTDEAY 764

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           ++   M+  E+    P+ VTYT ++      G ++   ++L  M   GV  N +TY +L+
Sbjct: 765 KL---MQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 821

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+   +D A  LL EM            Y  +I+GF    +   +L   +E+     
Sbjct: 822 DHCCKNGALDVAHNLLEEM-KQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDT 878

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA-WNMLVEGYCRMGLVEEA 412
           AP    Y  L+     + + ++A ++ +E+       VD  + +N L+E  C    VE A
Sbjct: 879 APFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETA 938

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++   M + G  P + ++ SL  G+    K  EALLL
Sbjct: 939 FQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLL 976



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 126/342 (36%), Gaps = 48/342 (14%)

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DDD EVF + L                          L++ +   G  S  +  LG   R
Sbjct: 193 DDDKEVFGEFL------------------------NVLVRKHCRNGSFSIALEELG---R 225

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            +D    P   TY  ++ A +KA  +D A  +  EM+   +  +  T        C   +
Sbjct: 226 LKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLC---K 282

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + K +E L  + +     PD V Y  LI G         A+ F N MRA    P  ++Y+
Sbjct: 283 VGKWREAL-TLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYS 341

Query: 362 TLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           TL+       Q     +V + M+ +   P  K+    +N LV  YC  G    A +++++
Sbjct: 342 TLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI----FNSLVHAYCTSGDHSYAYKLLKK 397

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M + G  P    Y  L   I   +      LL    K   E+   GV            +
Sbjct: 398 MVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVL----------N 447

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +  + +       A  + KA  ++  M   G  P+ + Y K+
Sbjct: 448 KINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKV 489


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 190/403 (47%), Gaps = 33/403 (8%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLL 112
           S PD   Y+ +L+     GK ++  +L  ++   G +PD L Y  VM  LC +++R    
Sbjct: 78  STPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLC-KSARLGEA 136

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDL 170
           + +LE ++  G    + TF +L++      +LE+A++++Q M     + DV      +D 
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMD- 195

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   G   + +++ E++  +               AP+   Y++ + G    G+V 
Sbjct: 196 ---GLCKAGRLQEAEQLLERMKASGC-------------APDVVAYSSFVYGLCKSGKVL 239

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITY 289
           +  ++L  MR   D+   P+ VTY T++  L K+G +D A +++ +M +  G   N + Y
Sbjct: 240 NAHQVLEQMR---DSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           + ++ G C+  +  +A+ ++  MA  A   PDVV+Y+ L++G         A+    EM 
Sbjct: 297 STVVDGLCKLGRTQEARSVMEAMA-RAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMA 355

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP----RVKVDIVAWNMLVEGYCR 405
             G  P  ++Y +L+       +   A ++ +EM             +  +N L+ G C+
Sbjct: 356 MEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCK 415

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            G +++A +  +RM+  G  P+  +Y ++  G++   + G AL
Sbjct: 416 AGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLA---RSGRAL 455



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/473 (22%), Positives = 193/473 (40%), Gaps = 44/473 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P++  +NA++N  +  G+P    +L + M   G +P+V++YN +++   +  R H    +
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 116 LERILEMG--ITLCMTTFQSLVAAYVGFGDLE-----IAETIVQAMREGRRDVCKIIREL 168
           +  ++  G   T  + T+ +L++ Y   G +E     + E I + +R       K++  L
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
                                K             ++     P    + TL+ G   E  
Sbjct: 128 C--------------------KSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKN 167

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +     +L  M     +    D VTY T++  L KAG +  A Q+L  M   G   + + 
Sbjct: 168 LEMADSLLQTM---AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVA 224

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y+  + G C+  ++  A ++L +M  D+  +P+VV+YN ++DG         AL    +M
Sbjct: 225 YSSFVYGLCKSGKVLNAHQVLEQM-RDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQM 283

Query: 349 RAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
            +  G     + Y+T++       + + A  V + M R    + D+V ++ LV G C+ G
Sbjct: 284 ASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMAR-AGCRPDVVTYSSLVNGLCKAG 342

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
            +EEA   +  M   G  PN  TY SL +G+    +  EA  + +E+             
Sbjct: 343 KIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSG-------GGG 395

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               PP +     L+  L     +A     AL+    M   G  P+   Y  I
Sbjct: 396 GDHCPPSVSTYNALIGGLC----KAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 21/373 (5%)

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M   G  P+ +T+N ++   ++  R      +LE +   GI   + ++  L+        
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 144 LEIAETIVQAM--REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201
              AE +V+ M  R GR     +     L  Y     G  ++  E+ ++++   + P   
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYC--KAGKVEESRELLKEVISRGLRP--- 115

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                     ++ +YT +M       R+ + + +L  M R       P  +T+ T++S  
Sbjct: 116 ----------DALMYTKVMASLCKSARLGEALELLEEMIRA---GCCPTLITFNTLISGC 162

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
            +  +++ A  +L  M   GV A+ +TYN L+ G C+  ++ +A++LL  M   +   PD
Sbjct: 163 CREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERM-KASGCAPD 221

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           VV+Y+  + G         A     +MR     P  ++Y T++     S +   A ++ +
Sbjct: 222 VVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMME 281

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           +M       +++V ++ +V+G C++G  +EA+ ++E M   G  P+V TY SL NG+  A
Sbjct: 282 QMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKA 341

Query: 442 RKPGEALLLWKEI 454
            K  EA+   +E+
Sbjct: 342 GKIEEAVEAVREM 354



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 160/379 (42%), Gaps = 75/379 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R+G  P +  ++T++S           +++++ D +++ +         S  K D   
Sbjct: 143 MIRAGCCPTLITFNTLISGCCRE------KNLEMADSLLQTM-------AASGVKADVVT 189

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     G+ ++  QL ++M   G  PDV+ Y+                       
Sbjct: 190 YNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYS----------------------- 226

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                       S V      G +  A  +++ MR+   D   +     L+       G 
Sbjct: 227 ------------SFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLC--KSGK 272

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D   E+ E++       SS+   L      N   Y+T++ G    GR  +   ++ AM 
Sbjct: 273 IDTALEMMEQM------ASSDGCGL------NVVGYSTVVDGLCKLGRTQEARSVMEAMA 320

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R       PD VTY+++V+ L KAG ++ A + + EM   G   N +TY  L+ G C   
Sbjct: 321 RA---GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCG 377

Query: 301 QIDKAKELLREMADDA----KIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGI 353
           ++ +A+ ++ EM+          P V +YN LI G      IDD   AL FF  MR++G 
Sbjct: 378 RLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDD---ALKFFQRMRSQGC 434

Query: 354 APTKISYTTLMKAFALSSQ 372
            P  +SY+T+++  A S +
Sbjct: 435 DPDGVSYSTIVEGLARSGR 453


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/462 (24%), Positives = 202/462 (43%), Gaps = 46/462 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P   +++  +  LA SG+             + R   F   + +  ++ D  +
Sbjct: 64  MVLKGHSPSSFSFNNALDLLAKSGN-------------LDRTWGFF-TEYLGRTQFDVYS 109

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +   + A    G   K  +L  QM   G  P+V  Y ++I+ C R         +  R+ 
Sbjct: 110 FWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMD 169

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSE--- 176
           ++G+      +  ++  +   G  +    + Q M        K++  L +L  Y+S    
Sbjct: 170 DLGLAANQYIYTIMINGFFKKGYKKDGFELYQKM--------KLVGVLPNLYTYNSLITE 221

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
              +G      +VF+++    +             A N+  Y  L+ G   +G+VS    
Sbjct: 222 YCRDGKLSLAFKVFDEISKRGV-------------ACNAVTYNILIGGLCRKGQVSKAEG 268

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M+R   N   P   T+  ++  L   G +D+A   L ++  IG+    +TYNIL+ 
Sbjct: 269 LLERMKRAHIN---PTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILIS 325

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ +        EL+REM +D  I P  V+Y IL++ F+  DD   A   F+ M+  G+ 
Sbjct: 326 GFSKVGNSSVVSELVREM-EDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLV 384

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P + +Y  L+    +      A+K++  M+ +  ++ + V +N ++ GYC+     +A +
Sbjct: 385 PDQHTYGVLIHGLCIKGNMVEASKLYKSMV-EMHLQPNDVIYNTMINGYCKECNSYKALK 443

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            +E M +NG  PNVA+Y S    +    K  EA  L KE+ E
Sbjct: 444 FLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTE 485



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 147/309 (47%), Gaps = 21/309 (6%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            A N  IYT ++ G+  +G   D   +   M+        P+  TY ++++   + G + 
Sbjct: 173 LAANQYIYTIMINGFFKKGYKKDGFELYQKMKLV---GVLPNLYTYNSLITEYCRDGKLS 229

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +V  E+++ GV  N +TYNIL+ G C++ Q+ KA+ LL  M   A I P   ++N+L
Sbjct: 230 LAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM-KRAHINPTTRTFNML 288

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +DG         AL++  +++  G+ PT ++Y  L+  F+      + +++  EM  D  
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREM-EDRG 347

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +    V + +L+  + R   +E+A  +   MK  G  P+  TYG L +G+ +     EA 
Sbjct: 348 ISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEAS 407

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L+K + E                  L+P++ + + + +   +     KAL+ +  M ++
Sbjct: 408 KLYKSMVEM----------------HLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKN 451

Query: 509 GIPPNKTKY 517
           G+ PN   Y
Sbjct: 452 GVTPNVASY 460



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 132/298 (44%), Gaps = 21/298 (7%)

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +K +   G VS    +L  M   E     P+   YT ++ A  + G +D+A+ + + M  
Sbjct: 114 IKAFCENGNVSKGFELLAQM---ETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDD 170

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
           +G+ AN+  Y I++ G+ ++       EL ++M     + P++ +YN LI  +      +
Sbjct: 171 LGLAANQYIYTIMINGFFKKGYKKDGFELYQKM-KLVGVLPNLYTYNSLITEYCRDGKLS 229

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A   F+E+  RG+A   ++Y  L+       Q   A  + + M R   +      +NML
Sbjct: 230 LAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKR-AHINPTTRTFNML 288

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           ++G C  G +++A   +E++K  G  P + TY  L +G S          L +E+++R  
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDR-- 346

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                          + P +     L +  VR+    KA E+   M+  G+ P++  Y
Sbjct: 347 --------------GISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTY 390



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 125/319 (39%), Gaps = 32/319 (10%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N     G  K   +L+ +M   G  P++ TYN +I    R  +  L   V + I 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+  L+      G +  AE +++ M+  R  +    R  ++      N G 
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMK--RAHINPTTRTFNMLMDGLCNTGQ 297

Query: 181 DDDDDEVFEKL-----LPNSI-------------NPSSEPPLL----PKTFAPNSRIYTT 218
            D      EKL      P  +             N S    L+     +  +P+   YT 
Sbjct: 298 LDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTI 357

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           LM  ++    +     M   M+R       PD  TY  ++  L   G+M  A ++   M 
Sbjct: 358 LMNTFVRSDDIEKAYEMFHLMKRI---GLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMV 414

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD- 337
            + +  N + YN ++ GYC++    KA + L EM  +  + P+V SY   I   IL  D 
Sbjct: 415 EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNG-VTPNVASYISTIQ--ILCKDG 471

Query: 338 -SAGALTFFNEMRARGIAP 355
            S  A     EM   G+ P
Sbjct: 472 KSIEAKRLLKEMTEAGLKP 490


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 197/450 (43%), Gaps = 56/450 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           M   G +P+   ++TV+     +G             D G   +V  ++ V+  + K S 
Sbjct: 383 MTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSR 442

Query: 48  PDIV---------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            + V         +   P+ A +N +L  C+  GK     ++  +M   G +PD  T+N 
Sbjct: 443 TEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNT 502

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I   AR   +     +   +++ G T C+TT+ +L+ A    GD + AE+++Q M+   
Sbjct: 503 LISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKG 562

Query: 159 RDVCKIIRELDLEDYSSENE--GDDDDDDEVFE-KLLPNSINPSSEPPLLPKTFAPNSRI 215
               +    L L  YS      G +  + E+++ ++ P+ I       LL      N + 
Sbjct: 563 FKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWI-------LLRTLVLSNHK- 614

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDN----ASHPDHVTYTTVVSALVKAGSMDRAR 271
                             R L  M R  D        PD V   +++S   +     +AR
Sbjct: 615 -----------------CRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAR 657

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++L  +   G+  N  TYN L+  Y ++ +  KA+E+L+ + +    EPDVVSYN +I G
Sbjct: 658 EMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVP-EPDVVSYNTVIKG 716

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F        A+   +EM  +GI PT ++Y T +  +A       AN+V   M+ +   + 
Sbjct: 717 FCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMI-EHNCRP 775

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
             + + +LV+GYC+ G  EEA   + ++KE
Sbjct: 776 SELTYKILVDGYCKAGKHEEAMDFVTKIKE 805



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 122/520 (23%), Positives = 209/520 (40%), Gaps = 81/520 (15%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           KLFD++   V K+S          D  AY  +L+A A  GK K+ + LFD+M   G  P 
Sbjct: 202 KLFDLI--PVEKYS---------LDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPT 250

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           ++TYNVM+ +  +  R         RILE+           + +  + F +   +  I  
Sbjct: 251 LVTYNVMLDVYGKMGRS------WGRILEL--------LDEMRSKGLEFDEFTCSTVISA 296

Query: 153 AMREGRRDVC-KIIRELDLEDYSSEN------------EGDDDDDDEVFEKLLPNSINPS 199
             REG  D   K + EL L  Y                 G   +   + +++  N+  P 
Sbjct: 297 CGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPD 356

Query: 200 SEP----------------------PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           S                         +  K   PN+  YTT++  Y   GR  D +R+  
Sbjct: 357 SITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFS 416

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M+   D    P+  TY +V++ L K    +   +VL EM   G   NR T+N +L    
Sbjct: 417 KMK---DLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCS 473

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           ++ + +   ++LREM +    EPD  ++N LI  +        +   + EM   G  P  
Sbjct: 474 EEGKHNYVNKVLREMKN-CGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCV 532

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            +Y  L+ A A     K A  V  +M +    K +  ++++L+  Y + G V   +++ +
Sbjct: 533 TTYNALLNALAHRGDWKAAESVIQDM-QTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEK 591

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
            + +   +P+     +L       R       L    +   +++K G           KP
Sbjct: 592 EIYDGQVFPSWILLRTLVLSNHKCRH------LRGMERAFDQLQKYGY----------KP 635

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           D  +++++  +  R   F KA E++  + E G+ PN   Y
Sbjct: 636 DLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTY 675



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 165/417 (39%), Gaps = 90/417 (21%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  V++A    G+    L+LF +M + G  P+V TYN ++ +  + SR   ++ V
Sbjct: 390 PNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKV 449

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYS 174
           L  +   G      T+ +++A                   EG+ + V K++RE+      
Sbjct: 450 LCEMKLNGCAPNRATWNTMLAV---------------CSEEGKHNYVNKVLREM------ 488

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +N G                             F P+   + TL+  Y   G   D+ +
Sbjct: 489 -KNCG-----------------------------FEPDKDTFNTLISSYARCGSEVDSAK 518

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M G M +   +   P   TY  +++AL   G    A  V+ +M   G   N  +Y++LL 
Sbjct: 519 MYGEMVK---SGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLH 575

Query: 295 GYCQQLQIDKAKELLREMADDAKI----------------------------------EP 320
            Y +   +   +++ +E+ D                                      +P
Sbjct: 576 CYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKP 635

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           D+V  N ++  F      + A    + +   G+ P   +Y  LM  +    +   A +V 
Sbjct: 636 DLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVL 695

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            + +++   + D+V++N +++G+CR GL++EA R++  M   G  P + TY +  +G
Sbjct: 696 -KGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSG 751



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 18/205 (8%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKL 375
           K   DV +Y  ++  +        A+  F++M   G+ PT ++Y  ++  +  +      
Sbjct: 211 KYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGR 270

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
             ++ DEM R   ++ D    + ++    R G+++EA++ +  +K NG+ P    Y S+ 
Sbjct: 271 ILELLDEM-RSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSML 329

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
                A    EAL + KE++            D++ PP    D    + LA   VRA F 
Sbjct: 330 QVFGKAGIYTEALSILKEME------------DNNCPP----DSITYNELAATYVRAGFL 373

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            + + ++  M   G+ PN   Y  +
Sbjct: 374 DEGMAVIDTMTSKGVMPNAITYTTV 398



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 123/317 (38%), Gaps = 66/317 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++SG+ P V  ++ +++ LA  GD    ESV + D+  K              KP+  +
Sbjct: 523 MVKSGFTPCVTTYNALLNALAHRGDWKAAESV-IQDMQTKGF------------KPNETS 569

Query: 61  YNAVLNACANLGK-----------------PKKFL------------------QLFDQMH 85
           Y+ +L+  +  G                  P   L                  + FDQ+ 
Sbjct: 570 YSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQ 629

Query: 86  EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
           ++G KPD++  N M+ + +R         +L  I E G+   + T+  L+  YV   +  
Sbjct: 630 KYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECW 689

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            AE +++ ++         + E D+  Y++  +G         + L+  +I   SE  + 
Sbjct: 690 KAEEVLKGIQNS-------VPEPDVVSYNTVIKG------FCRKGLMQEAIRVLSE--MT 734

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            K   P    Y T + GY       +   ++   R   ++   P  +TY  +V    KAG
Sbjct: 735 TKGIQPTIVTYNTFLSGYAGMELFDEANEVI---RFMIEHNCRPSELTYKILVDGYCKAG 791

Query: 266 SMDRARQVLAEMTRIGV 282
             + A   + ++  I +
Sbjct: 792 KHEEAMDFVTKIKEIDI 808


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 198/467 (42%), Gaps = 54/467 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  PH++A + +++ L            +L D V K  +K     +V++       YN +
Sbjct: 163 GLKPHLQACTVLLNSLVKQ---------RLTDTVWKIFKKMVKLGVVAN----IHVYNVL 209

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++AC+  G P+K  +L  +M E G  PD+ TYN +I +  + S     + V +R+   G+
Sbjct: 210 VHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGV 269

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-RDVCKIIRELDLEDYSSENEGDDDD 183
              + T+ S +    GF             REGR R+  ++ RE+           DD  
Sbjct: 270 APNIVTYNSFIH---GFS------------REGRMREATRLFREIK----------DDVT 304

Query: 184 DDEVFEKLLPNS---INPSSEPPLL-----PKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            + V    L +    +N   E   L      + F+P    Y ++++    +GR+ +  R+
Sbjct: 305 ANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRL 364

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  ++     PD++T  T+++A  K   M  A +V  +M   G+  +  +Y  L+ G
Sbjct: 365 LTEMSGKK---IEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHG 421

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+ L+++ AKE L  M +     P   +Y+ L+DGF   +          E   RG+  
Sbjct: 422 FCKVLELENAKEELFSMIEKG-FSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCA 480

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
               Y  L++      Q   A  +F+ M +   V  D V +  +   Y R G V EA  +
Sbjct: 481 DVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVG-DSVIFTTMAYAYWRTGKVTEASAL 539

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
            + M       N+  Y S++   S A         W  + +RC + K
Sbjct: 540 FDVMYNRRLMVNLKLYKSIS--ASYAGDNDVLRFFWSHVGDRCLISK 584


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/513 (22%), Positives = 223/513 (43%), Gaps = 77/513 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M ++G++ +  +++ ++  L  SG  G  E+++++  +V               KP    
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCG--EALEVYRRMVSE-----------GLKPSLKT 229

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A++ A       +  + L  +M + G +P+V T+ + I++  RA +      +  R+ 
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMD 289

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + T+  L+ A    G LE A+ +   M+       ++I    L+ ++  + GD
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN--DFGD 347

Query: 181 DDDDDEVFEKL-----LPNSINPSSEPPLLPKT------FA-----------PNSRIYTT 218
            D   E + ++     +P+ +  +    +L K       FA           PN   Y T
Sbjct: 348 LDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNT 407

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV----- 273
           L+ G +  GR+ D +++LG M   E     P   TY   +    K+G   +A +      
Sbjct: 408 LICGLLRAGRIEDALKLLGTM---ESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMK 464

Query: 274 -----------------LAEMTRI-------------GVPANRITYNILLKGYCQQLQID 303
                            LAEM R+             G+  + +TYN+++K Y +  Q+D
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A  LL EM  +   EPDV+  N LID          A   F+ M+   ++PT ++Y TL
Sbjct: 525 EAVNLLSEMIRNG-CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTL 583

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +       + + A ++F+ M+ + +   + +++N L++ +C+   VE A ++  +M    
Sbjct: 584 LSGLGKEGRVQKAIELFESMI-EKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             P+V TY ++  G+    K   A   + ++K+
Sbjct: 643 CKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK 675



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 2/206 (0%)

Query: 249  PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
            P   TY  ++  L K G ++ A ++  EM+  G   N   +NIL+ GY +    + A +L
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 309  LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             + M ++  I PD+ SY IL+D   L      AL +FNE+++ G+ P  I+Y  ++    
Sbjct: 951  FKRMVNEG-IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 369  LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             S + + A  +++EM R+  +  D+  +N L+      G+VE+AKR+ E ++  G  P+V
Sbjct: 1010 KSQRMEEALALYNEM-RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDV 1068

Query: 429  ATYGSLANGISLARKPGEALLLWKEI 454
             TY +L  G SL+  P  A  ++K +
Sbjct: 1069 FTYNALIRGYSLSENPEHAYTVYKNM 1094



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 185/423 (43%), Gaps = 31/423 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y  +L+   + G    F + + QM   G  PDV+T+ +++ +  +A        
Sbjct: 329 KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFA 388

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             + + + GI   + T+ +L+   +  G +E A  ++  M             + + DY 
Sbjct: 389 TFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFI-DYF 447

Query: 175 SENEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT-----------------FAPN 212
            ++ G+     E FEK+     +PN +  ++    L +                   AP+
Sbjct: 448 GKS-GETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPD 506

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           S  Y  +MK Y   G+V + V +L  M R   N   PD +   +++ +L KAG +D A Q
Sbjct: 507 SVTYNMMMKCYSKVGQVDEAVNLLSEMIR---NGCEPDVIVVNSLIDSLYKAGRVDEAWQ 563

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +   M  + +    +TYN LL G  ++ ++ KA EL   M  + K  P+ +S+N L+D F
Sbjct: 564 MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMI-EKKCSPNTISFNTLLDCF 622

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
              D+   AL  F++M      P  ++Y T++      ++   A   F ++ +   +  D
Sbjct: 623 CKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS--MHPD 680

Query: 393 IVAWNMLVEGYCRMGLVEEAKRII-ERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            V    L+ G  + G + +A  I  + M +  F  N + +  L  G  +  +  +A++  
Sbjct: 681 HVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFA 740

Query: 452 KEI 454
           +E+
Sbjct: 741 EEL 743



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 131/635 (20%), Positives = 248/635 (39%), Gaps = 138/635 (21%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASG--DD-----GPVESVKL------FDVVVKRVRKFSD 47
            M + G LP++  ++T++  L  +G  +D     G +ESV +      +++ +    K  +
Sbjct: 393  MRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGE 452

Query: 48   PDIVSDS---------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
                 ++          P+  A NA L + A +G+ ++   +F+ + E G  PD +TYN+
Sbjct: 453  TGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNM 512

Query: 99   MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
            M+K  ++  +    V +L  ++  G    +    SL+ +    G ++ A  +   M++ +
Sbjct: 513  MMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK 572

Query: 159  RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL-----PNSINPSS---------EPPL 204
                 +     L     E  G      E+FE ++     PN+I+ ++         E  L
Sbjct: 573  LSPTVVTYNTLLSGLGKE--GRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVEL 630

Query: 205  LPKTFA--------PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
              K F+        P+   Y T++ G + E +V+        +++    + HPDHVT  T
Sbjct: 631  ALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK----SMHPDHVTICT 686

Query: 257  VVSALVKAGSMDRARQVLAE-MTRIGVPANRITYNILLKGYCQQLQIDKA---------- 305
            ++  LVK G +  A  +  + M ++    NR  +  L+ G   + ++DKA          
Sbjct: 687  LLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLN 746

Query: 306  -------------------------KELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
                                      ++  +      I P + SYN LI   + +  +  
Sbjct: 747  GICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEK 806

Query: 341  ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM-- 398
            A   F +M+  G AP   ++  L+     S +     +++ EM+   R K D + +N+  
Sbjct: 807  AWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMI-SRRCKPDAITYNIVI 865

Query: 399  ---------------------------------LVEGYCRMGLVEEAKRIIERMKENGFY 425
                                             L++G  ++G +EEA R+ E M + G  
Sbjct: 866  SSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 426  PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
            PN A +  L NG     K G+        +  C++ K  VN        ++PD +    L
Sbjct: 926  PNCAIFNILINGYG---KIGDT-------ETACQLFKRMVNEG------IRPDLKSYTIL 969

Query: 486  ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             D    A    +AL     ++  G+ P+   Y +I
Sbjct: 970  VDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRI 1004



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 5/233 (2%)

Query: 204  LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
            L+   F P  R Y  L+ G    GR+ + +R+   M    D    P+   +  +++   K
Sbjct: 884  LVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM---SDYGCKPNCAIFNILINGYGK 940

Query: 264  AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
             G  + A Q+   M   G+  +  +Y IL+   C   ++D+A     E+     ++PD +
Sbjct: 941  IGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG-LDPDFI 999

Query: 324  SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            +YN +I+G         AL  +NEMR RGI P   +Y +LM    L+   + A ++++E 
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE- 1058

Query: 384  LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            L+   ++ D+  +N L+ GY      E A  + + M  +G  PN+ TY  L N
Sbjct: 1059 LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 210  APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            AP++  +  L+  +   G++++   +   M  +      PD +TY  V+S+L K+ ++D+
Sbjct: 820  APDAFTFNMLLAVHGKSGKITELFELYKEMISRR---CKPDAITYNIVISSLAKSNNLDK 876

Query: 270  ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            A     ++          TY  L+ G  +  ++++A  L  EM+D    +P+   +NILI
Sbjct: 877  ALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG-CKPNCAIFNILI 935

Query: 330  DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            +G+  I D+  A   F  M   GI P   SYT L+    L+ +   A   F+E L+   +
Sbjct: 936  NGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE-LKSTGL 994

Query: 390  KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
              D +A+N ++ G  +   +EEA  +   M+  G  P++ TY SL   + LA    +A  
Sbjct: 995  DPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKR 1054

Query: 450  LWKEIK 455
            +++E++
Sbjct: 1055 MYEELQ 1060



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 142/314 (45%), Gaps = 21/314 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +   P+ + Y+ LM      G+  D+  ++  ++  ED    P+  T+T  +  L +
Sbjct: 218 MVSEGLKPSLKTYSALMVAL---GKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGR 274

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A ++   M   G   + +TY +L+   C   Q++ AKEL  +M  +   +PD V
Sbjct: 275 AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGH-KPDQV 333

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            Y  L+D F    D      F+++M A G  P  +++T L+     +     A   FD M
Sbjct: 334 IYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVM 393

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R   +  ++  +N L+ G  R G +E+A +++  M+  G  P   TY    +    + +
Sbjct: 394 -RKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGE 452

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
            G+A+  ++++K +             + P +      L +LA++       R+A  +  
Sbjct: 453 TGKAVETFEKMKAK------------GIVPNIVACNASLYSLAEM----GRLREAKTMFN 496

Query: 504 CMEEHGIPPNKTKY 517
            + E+G+ P+   Y
Sbjct: 497 GLRENGLAPDSVTY 510



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 35/316 (11%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD   +N +L      GK  +  +L+ +M     KPD +TYN++I   A+++        
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNN------- 873

Query: 116  LERILEMGITLCMT-------TFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRE 167
            L++ L+    L  +       T+  L+      G LE A  + + M + G +  C I   
Sbjct: 874  LDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNI 933

Query: 168  LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
            L +  Y     GD +   ++F++++   I              P+ + YT L+      G
Sbjct: 934  L-INGYGK--IGDTETACQLFKRMVNEGIR-------------PDLKSYTILVDCLCLAG 977

Query: 228  RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            RV + +     ++        PD + Y  +++ L K+  M+ A  +  EM   G+  +  
Sbjct: 978  RVDEALYYFNELK---STGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLY 1034

Query: 288  TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            TYN L+        +++AK +  E+   A +EPDV +YN LI G+ L ++   A T +  
Sbjct: 1035 TYNSLMLNLGLAGMVEQAKRMYEEL-QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093

Query: 348  MRARGIAPTKISYTTL 363
            M   G  P   +Y  L
Sbjct: 1094 MMVDGCNPNIGTYAQL 1109



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 20/308 (6%)

Query: 215 IYTTLMKGYMNEG-RVSDTVR-MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           ++TT    +M E  RV D V  M       +      D  TY T+  AL   G + +   
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTT 178

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           VL +M + G   N  +YN L+    Q     +A E+ R M  +  ++P + +Y+ L+   
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEG-LKPSLKTYSALMVAL 237

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
               DS   +    EM   G+ P   ++T  ++    + +   A ++F  M  D     D
Sbjct: 238 GKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPD 296

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +V + +L++  C  G +E AK +  +MK NG  P+   Y +L +  +           W 
Sbjct: 297 LVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           +++           AD  +     PD      L D+  +A  F +A      M + GI P
Sbjct: 357 QME-----------ADGYM-----PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILP 400

Query: 513 NKTKYKKI 520
           N   Y  +
Sbjct: 401 NLHTYNTL 408


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 180/368 (48%), Gaps = 22/368 (5%)

Query: 88  GAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           G  P+ +T N +IK LC +       +F  ++++ +G  L   ++ +L+      G+   
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLF-HDKLVALGFHLDQVSYGTLIHGLCKVGETRA 60

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
           A  ++Q + +G+      + +L+   Y++   G   D      K + ++ +  SE  ++ 
Sbjct: 61  ALDLLQRV-DGK------LVQLNAVMYNTVIYGMCKD------KHVNDAFDLYSE--MVS 105

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K  +PN   Y+ L+ G+   G++ D + +   +  +      PD  T+  +V    K   
Sbjct: 106 KGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILEN---IKPDGYTFNILVDGFCKDRK 162

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           M   + V A M + G+  + +TYN L+ GY    +++ AK +   MA    + PD+ SYN
Sbjct: 163 MKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGG-VNPDIRSYN 221

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILI+GF  I     A+  FNEM  + I P  ++Y +L+   + S +   A ++ D+M  D
Sbjct: 222 ILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQM-HD 280

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V  +I+ +N +++   +   V++A  +I + K+ G  P++ TY  L +G+    +  +
Sbjct: 281 RGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKD 340

Query: 447 ALLLWKEI 454
           A  +++++
Sbjct: 341 ARNIFEDL 348



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 145/302 (48%), Gaps = 21/302 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+ G     +V +T   L  ++R +      + V Y TV+  + K   ++ A  + +
Sbjct: 45  YGTLIHGLC---KVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYS 101

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM   G+  N +TY+ L+ G+    ++  A +L  ++  +  I+PD  ++NIL+DGF   
Sbjct: 102 EMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILE-NIKPDGYTFNILVDGFCKD 160

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                  T F  M  +GI P  ++Y +L+  + L  +   A  +F+ M +   V  DI +
Sbjct: 161 RKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGG-VNPDIRS 219

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N+L+ G+C++  V++A  +   M      PNV TY SL +G+S + +   AL L  ++ 
Sbjct: 220 YNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMH 279

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +R             +PP +     ++DAL     +     KA+ ++   ++ GI P+  
Sbjct: 280 DR------------GVPPNILTYNSIIDAL----FKTHQVDKAIALITKFKDQGIQPSMY 323

Query: 516 KY 517
            Y
Sbjct: 324 TY 325



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 129/295 (43%), Gaps = 56/295 (18%)

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
           +G   N IT N L+KG C + QI +A  L  +         D VSY  LI G   + ++ 
Sbjct: 1   MGYHPNTITLNTLIKGLCLKGQIHQA-FLFHDKLVALGFHLDQVSYGTLIHGLCKVGETR 59

Query: 340 GAL-----------------------------------TFFNEMRARGIAPTKISYTTLM 364
            AL                                     ++EM ++GI+P  ++Y+ L+
Sbjct: 60  AALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALI 119

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             F +  + K A  +F++++ +  +K D   +N+LV+G+C+   ++E K +   M + G 
Sbjct: 120 SGFFVVGKLKDAIDLFNKIILE-NIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGI 178

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKE----------------IKERCEVKK--EGVN 466
            P+V TY SL +G  L ++   A  ++                  I   C++KK  + +N
Sbjct: 179 IPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMN 238

Query: 467 ADSDLP-PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +++    + P+    ++L D   ++     AL++V  M + G+PPN   Y  I
Sbjct: 239 LFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSI 293



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 35/284 (12%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   YN V+              L+ +M   G  P+V+TY+ +I       +    + + 
Sbjct: 76  NAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLF 135

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            +I+   I     TF  LV  +             + M+EG+     ++++  + D  + 
Sbjct: 136 NKIILENIKPDGYTFNILVDGFCK----------DRKMKEGKTVFAMMMKQGIIPDVVTY 185

Query: 177 NEGDD--------DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           N   D        +    +F  +    +N             P+ R Y  L+ G+    +
Sbjct: 186 NSLVDGYRLVKEVNTAKSIFNTMAQGGVN-------------PDIRSYNILINGFCKIKK 232

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V   + +   M  +      P+ VTY +++  L K+G +  A Q++ +M   GVP N +T
Sbjct: 233 VDKAMNLFNEMHCKN---IIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILT 289

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           YN ++    +  Q+DKA  L+ +  D   I+P + +Y ILIDG 
Sbjct: 290 YNSIIDALFKTHQVDKAIALITKFKDQG-IQPSMYTYTILIDGL 332



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 128/314 (40%), Gaps = 70/314 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+V  +S ++S     G     +++ LF+ +           I+ + KPD   
Sbjct: 103 MVSKGISPNVVTYSALISGFFVVGK--LKDAIDLFNKI-----------ILENIKPDGYT 149

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N +++      K K+   +F  M + G  PDV+TYN                       
Sbjct: 150 FNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYN----------------------- 186

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                       SLV  Y    ++  A++I   M +G  +        D+  Y+    G 
Sbjct: 187 ------------SLVDGYRLVKEVNTAKSIFNTMAQGGVNP-------DIRSYNILING- 226

Query: 181 DDDDDEVFEKL--LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                  F K+  +  ++N  +E  +  K   PN   Y +L+ G    GR+S  ++++  
Sbjct: 227 -------FCKIKKVDKAMNLFNE--MHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQ 277

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    D    P+ +TY +++ AL K   +D+A  ++ +    G+  +  TY IL+ G C+
Sbjct: 278 M---HDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK 334

Query: 299 QLQIDKAKELLREM 312
             ++  A+ +  ++
Sbjct: 335 GGRLKDARNIFEDL 348


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/441 (21%), Positives = 188/441 (42%), Gaps = 66/441 (14%)

Query: 19  RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFL 78
           R   +G+   +++   FD++++           S   P  +++N +L   A +    +  
Sbjct: 62  RNCKTGNIDVIQAFHFFDLMMR-----------SHPIPPISSFNRLLGGLAKINHYSQLF 110

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
            L+++M   G  PD+ T N++       +R    +  +  IL  G    + T+ +L+   
Sbjct: 111 SLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGL 170

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
            G                    +CK+              G +D+  E+FE++    +  
Sbjct: 171 YG--------------------LCKV--------------GHEDEAKEIFEEMKAQGM-- 194

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                       PN   Y++L+ G+   G++ ++ R+   M    D    P+ V +  ++
Sbjct: 195 -----------IPNVISYSSLVHGFCCAGKLEESKRLFNEMV---DQGVQPNLVQFNVLI 240

Query: 259 SALVKAGS---MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
             L K G    +  AR++   M   G   N I+Y IL+ GYC+  ++++A  L  EM   
Sbjct: 241 DILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQV 300

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
            K  P+V +Y+ L+ G +       A   F  M+A GI+     Y   +     +     
Sbjct: 301 GK-RPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFE 359

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A ++F+E L+    K+D  +++ L++G C+ G VE A    +++ + G  PNV T   + 
Sbjct: 360 AMELFNE-LKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMI 418

Query: 436 NGISLARKPGEALLLWKEIKE 456
           +G     +  +A +L++++++
Sbjct: 419 HGFCRVEQVDKANILFEKMEK 439



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 43/364 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK----LCARASRKHL 111
           PD    N + N   NL +  + L     +   G  PD++TYN +IK    LC +   +  
Sbjct: 123 PDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLC-KVGHEDE 181

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE-----IAETIVQAMREGRRDVCKII- 165
              + E +   G+   + ++ SLV  +   G LE       E + Q ++        +I 
Sbjct: 182 AKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLID 241

Query: 166 ---RELDLEDYSSENE------GDDDDDDEVFEKLLPN----------SINPSSEPPLLP 206
              +E  + D SS  +          + +E+   +L N          ++N  +E P + 
Sbjct: 242 ILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVG 301

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   PN + Y+TL+ G +  G+V D  ++ G M+    +    D   Y   +  L K G 
Sbjct: 302 KR--PNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISV---DSCIYVIFLDGLCKNGV 356

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A ++  E+       +  +Y+ L+ G C+  +++ A E  ++++ +  ++P+VV+ N
Sbjct: 357 LFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEG-LQPNVVTCN 415

Query: 327 ILIDGFILIDDSAGALTFFNEMRA---RGIAPTKISYTTLMKAFALSSQPK----LANKV 379
           I+I GF  ++    A   F +M      G  P  I+Y TL++ F  S++ +    L +K+
Sbjct: 416 IMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 475

Query: 380 FDEM 383
           F  M
Sbjct: 476 FKRM 479



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 24/232 (10%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRI---GVPANRITYNILLKGY---CQQLQI 302
           PD  T   + + L    +++R  + LA MT I   G   + +TYN L+KG    C+    
Sbjct: 123 PDLFTLNILANCLC---NLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHE 179

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D+AKE+  EM     I P+V+SY+ L+ GF        +   FNEM  +G+ P  + +  
Sbjct: 180 DEAKEIFEEMKAQGMI-PNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNV 238

Query: 363 LMKAFALSSQPKL-----ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           L+    L  + K+     A K+F  M      + + +++ +L+ GYC++  VEEA  +  
Sbjct: 239 LIDI--LCKEGKIGDLSSARKLFLSM-PSKGCEHNEISYTILINGYCKIWKVEEAMNLYN 295

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
            M + G  PNV TY +L  G+    K G+A  L+  +      K  G++ DS
Sbjct: 296 EMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVM------KASGISVDS 341



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P + S+N L+ G   I+  +   + +N+MR  G++P   +   L       ++       
Sbjct: 88  PPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAA 147

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGY---CRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
              +LR   +  DIV +N L++G    C++G  +EAK I E MK  G  PNV +Y SL +
Sbjct: 148 MTGILRRGYIP-DIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVH 206

Query: 437 GISLARKPGEALLLWKEIKER 457
           G   A K  E+  L+ E+ ++
Sbjct: 207 GFCCAGKLEESKRLFNEMVDQ 227



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/346 (19%), Positives = 139/346 (40%), Gaps = 55/346 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK----- 55
           +LR GY+P +  ++T++  L      G  +  K               +I  + K     
Sbjct: 151 ILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAK---------------EIFEEMKAQGMI 195

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +Y+++++     GK ++  +LF++M + G +P+++ +NV+I +  +  +   L   
Sbjct: 196 PNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSA 255

Query: 116 LERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLE 171
            +  L M    C     ++  L+  Y     +E A  +   M + G+R   K    L   
Sbjct: 256 RKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTG 315

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSE----------------------PPLLPKTF 209
              +   G   D +++F  +  + I+  S                         L    F
Sbjct: 316 LLQT---GKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNF 372

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
             +   Y+ L+ G    G+V         + ++      P+ VT   ++    +   +D+
Sbjct: 373 KLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQE---GLQPNVVTCNIMIHGFCRVEQVDK 429

Query: 270 ARQVLAEMTRI---GVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           A  +  +M ++   G   + ITYN LL+G+C+  ++++   LL +M
Sbjct: 430 ANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 475


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 204/483 (42%), Gaps = 64/483 (13%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
            G +P V  +++++  L +   +   E+  LF+ + K           +  +P+  +Y+ 
Sbjct: 138 GGCVPDVVTFNSLLKGLCSG--ERMSEAFVLFEYMAK-----------AGCEPNVISYST 184

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +L+     G+  +  +L+++M E    PD++ Y   +    +A+R         +++  G
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAET--IVQAMREGRRD-VCKIIRELDLEDYSSENEGD 180
                  F +++      G  E A+   I    R G  D  CK   E+   ++    E  
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELF 304

Query: 181 DDDDDEVFE-KLLPN---------SINPSSEPPLLPK----------------------- 207
           +     V + K LP+         S+     PP L                         
Sbjct: 305 NTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNE 364

Query: 208 ----TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
                 +P+   Y+ L+ G    G++     +L  M ++      PD  T  ++++AL K
Sbjct: 365 MANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE---GVFPDSFTDASILNALSK 421

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A   L  M   G   + +TYN LL G C+  +ID+A   L +M   AK  PDV 
Sbjct: 422 AGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVA-AKCTPDVF 480

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           SY I+I        +AGA   F EM  RG+ P  + Y +L+   A +    LA     E+
Sbjct: 481 SYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLAL----EL 536

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           L+    K D V   M+++G C+ G  E+A  ++ERM + GF  +  TY S+ +G+   RK
Sbjct: 537 LKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGL---RK 593

Query: 444 PGE 446
            G+
Sbjct: 594 LGK 596



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 64/323 (19%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  TY+ V+  L KAG +D+A+++L ++   GV  N ITY++++ G C+  ++D A E+
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEI 130

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
            + M+      PDVV++N L+ G    +  + A   F  M   G  P  ISY+TL+    
Sbjct: 131 FKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLC 190

Query: 369 LSSQPKLANKVFDEMLRDPRV----------------------------------KVDIV 394
            + +   A ++++EM+    V                                  K D V
Sbjct: 191 KAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAV 250

Query: 395 AW-----------------NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           A+                 N ++E  CR G+++EA +  E M      P+   + +L + 
Sbjct: 251 AFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHA 310

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +  +++  + +LL++ +K   E            PP L+    ++D L     +A    +
Sbjct: 311 VCKSKRLPDGVLLFQRMKSMKEFY---------CPPNLETYNIMVDNLC----KAKQLDE 357

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           A E+V  M  +G+ P+   Y  +
Sbjct: 358 AQELVNEMANYGLSPDVVTYSAL 380



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 122/233 (52%), Gaps = 5/233 (2%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           YT + +   + G++S  VR+   + RQ+         TY   + AL KA +   A +   
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQK--GYQHSVFTYNCFLDALAKANAGQLAYEKFQ 62

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M R G P +  TY+I+L+G C+  ++DKAKELL ++ +   ++ +V++Y+++IDG    
Sbjct: 63  QMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESG-VKLNVITYSVVIDGCCKA 121

Query: 336 DDSAGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                AL  F  M +  G  P  +++ +L+K      +   A  +F+ M +    + +++
Sbjct: 122 SRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAK-AGCEPNVI 180

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           +++ L++G C+ G ++EA R+ E M E    P++  Y S   G+  A +  EA
Sbjct: 181 SYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEA 233



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 115/537 (21%), Positives = 214/537 (39%), Gaps = 92/537 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+ VL      G+  K  +L  Q+ E G K +V+TY+V+I  C +ASR    + +
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEI 130

Query: 116 LERILEMGITLC-MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            + +   G  +  + TF SL+        +  A  + + M +   +   +I    L D  
Sbjct: 131 FKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEP-NVISYSTLLDGL 189

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +  G  D+   ++E+             ++ K+  P+   YT+ + G     RV++   
Sbjct: 190 CK-AGRLDEACRLWEE-------------MVEKSCVPDLVAYTSFVTGLCKANRVAEACD 235

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR-QVLAEMTRIGV----------- 282
                R+     S  D V ++TV+  L K G  + A+ Q++  + R G+           
Sbjct: 236 ---CCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEM 292

Query: 283 -----PANRITYNILLKGYCQQ-------------------------------------- 299
                P +   +N L+   C+                                       
Sbjct: 293 ISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKA 352

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q+D+A+EL+ EMA+   + PDVV+Y+ L+DG   +     A     EM   G+ P   +
Sbjct: 353 KQLDEAQELVNEMANYG-LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFT 411

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
             +++ A + + +   A     E ++      D+V +N L++G C+ G ++EA   + +M
Sbjct: 412 DASILNALSKAGKVDYALSHL-ETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKM 470

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EGV--NADS 469
                 P+V +Y  +   +  + +   A  +++E+ +R  +          +G+  N   
Sbjct: 471 VAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLE 530

Query: 470 DLPPPL------KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           DL   L      KPD  +   + D   +A     A E+V  M + G P +   Y  +
Sbjct: 531 DLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISV 587



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 202/481 (41%), Gaps = 56/481 (11%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           Y  V     +LGK    ++LFD +  + G +  V TYN  +   A+A+   L     +++
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G      T+  ++      G+L+ A+ ++  +RE    +  I   + ++     +  
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASR- 123

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             DD  E+F+ +       SS    +P     NS     L+KG  +  R+S+   +   M
Sbjct: 124 -VDDALEIFKTM-------SSGGGCVPDVVTFNS-----LLKGLCSGERMSEAFVLFEYM 170

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            +       P+ ++Y+T++  L KAG +D A ++  EM       + + Y   + G C+ 
Sbjct: 171 AKA---GCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA 227

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA------------------GA 341
            ++ +A +  R+M      + D V+++ +I G +     A                   A
Sbjct: 228 NRVAEACDCCRKMVTKGS-KADAVAFSTVI-GILCKKGHAEEAQNQMIEHLCRSGMLDEA 285

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPRVKVDIVAWNML 399
              F EM +R   P+   + TL+ A   S +      +F  M  +++     ++  +N++
Sbjct: 286 CKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIM 345

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           V+  C+   ++EA+ ++  M   G  P+V TY +L +G+    K   A  L +E+     
Sbjct: 346 VDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM----- 400

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
             KEGV  DS        D  +L+AL+    +A     AL  +  M+  G  P+   Y  
Sbjct: 401 -SKEGVFPDS------FTDASILNALS----KAGKVDYALSHLETMKARGSTPDLVTYNT 449

Query: 520 I 520
           +
Sbjct: 450 L 450



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 110/288 (38%), Gaps = 34/288 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V  +S +V  L   G           D     + + S   +  DS  D + 
Sbjct: 365 MANYGLSPDVVTYSALVDGLCKLGK---------LDRACDLLEEMSKEGVFPDSFTDAS- 414

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              +LNA +  GK    L   + M   G+ PD++TYN ++    +A R    +  L +++
Sbjct: 415 ---ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMV 471

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
               T  + ++  ++ A    G    A  I Q M   +R V       D   Y S     
Sbjct: 472 AAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV--KRGVLP-----DTVLYHS----- 519

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 + + L  N +   +   L      P+  ++  ++ G    G+  D   ++    
Sbjct: 520 ------LLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVV---E 570

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           R  D     D  TY +VVS L K G +D+ARQ++ + +       R++
Sbjct: 571 RMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASETHTSVERLS 618


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 189/440 (42%), Gaps = 71/440 (16%)

Query: 11  KAWST---VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           ++W T   V+  LA   DDG       FD   K + +  + +I     P T  ++ ++ A
Sbjct: 94  RSWVTHNLVIDMLAK--DDG-------FDTYWKILEELKNSNI--QIPPPT--FSVLIAA 140

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
            A  G  +K ++ F +M +FG KPDV TYN ++ +  +     L + V  ++L++     
Sbjct: 141 YAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPN 200

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             TF  L+                         +CK               G  DD  ++
Sbjct: 201 RATFVILLNG-----------------------LCK--------------NGKTDDALKM 223

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F+++    I              PN+ IYT ++ G     R  D  R+L  M+    +  
Sbjct: 224 FDEMTQKGI-------------PPNTMIYTIILSGLCQAKRTDDVHRLLNTMKV---SGC 267

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            PD +T   ++    K G +D A  +L    + G       Y+ L+ G  +  + D+ +E
Sbjct: 268 CPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQE 327

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
             R+M   A IEPDVV Y ILI GF  +     AL   N+M  RG++P    Y  L+K F
Sbjct: 328 WCRKMF-KAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGF 386

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                   A  +  E+ ++         + +L+ G CR GL++EA++I  +M+  G  P+
Sbjct: 387 CDVGLLDKARSLQLEISKNDCFPTS-CTYTILICGMCRNGLLDEARQIFNQMENLGCSPS 445

Query: 428 VATYGSLANGISLARKPGEA 447
           + T+ +L +G+  A +  EA
Sbjct: 446 IMTFNALIDGLCKAGELEEA 465



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/471 (21%), Positives = 183/471 (38%), Gaps = 122/471 (25%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+ A +  +LN     GK    L++FD+M + G  P+ + Y +++    +A R   +  +
Sbjct: 199 PNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRL 258

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
           L  +   G      T  +L+  +   G ++ A  ++Q   +EG          L ++ YS
Sbjct: 259 LNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYV--------LGIKGYS 310

Query: 175 SENEG-----DDDDDDEVFEKLLPNSINP----------------------SSEPPLLPK 207
           S  +G       D+  E   K+    I P                      +    +  +
Sbjct: 311 SLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQR 370

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
             +P++  Y  L+KG+ + G + D  R L     + D    P   TYT ++  + + G +
Sbjct: 371 GLSPDTYCYNALIKGFCDVGLL-DKARSLQLEISKND--CFPTSCTYTILICGMCRNGLL 427

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM--------------- 312
           D ARQ+  +M  +G   + +T+N L+ G C+  ++++A+ L  +M               
Sbjct: 428 DEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQG 487

Query: 313 AD--------------------------------DAKIEPDVVSYNILIDGFILIDDSAG 340
           AD                                D+ + PD+++YN+LI+GF    +  G
Sbjct: 488 ADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNING 547

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A   F E++ +G +P  ++Y TL                                    +
Sbjct: 548 AFKLFRELQLKGHSPDSVTYGTL------------------------------------I 571

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           +G+ R+   E+A R++++M +NG  P+ A Y  L        K   A  LW
Sbjct: 572 DGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLW 622



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 136/340 (40%), Gaps = 67/340 (19%)

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DD  + + K+L    N + + P  P TF       + L+  Y   G     V   G M+ 
Sbjct: 109 DDGFDTYWKILEELKNSNIQIP--PPTF-------SVLIAAYAKSGMAEKAVESFGKMK- 158

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             D    PD  TY +++  +V+      A  V  +M ++    NR T+ ILL G C+  +
Sbjct: 159 --DFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
            D                                     AL  F+EM  +GI P  + YT
Sbjct: 217 TDD------------------------------------ALKMFDEMTQKGIPPNTMIYT 240

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            ++     + +    +++ + M +      D +  N L++G+C++G ++EA  +++  ++
Sbjct: 241 IILSGLCQAKRTDDVHRLLNTM-KVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEK 299

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC-EVKKEGVNADSDLPPPLKPDEE 480
            G+   +  Y SL +G+  A++       + E++E C ++ K G+          +PD  
Sbjct: 300 EGYVLGIKGYSSLIDGLFRAKR-------YDEVQEWCRKMFKAGI----------EPDVV 342

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L   L            AL ++  M + G+ P+   Y  +
Sbjct: 343 LYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNAL 382



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/452 (20%), Positives = 179/452 (39%), Gaps = 46/452 (10%)

Query: 3   RSGYLPHVKAWSTVVSRL--AASGDDGPVESVKLF------DVVVKRV--RKFSDPDIVS 52
           + GY+  +K +S+++  L  A   D+      K+F      DVV+  +  R F +  +V 
Sbjct: 299 KEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVD 358

Query: 53  DS------------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
            +             PDT  YNA++    ++G   K   L  ++ +    P   TY ++I
Sbjct: 359 YALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILI 418

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
               R         +  ++  +G +  + TF +L+      G+LE A  +   M  G+  
Sbjct: 419 CGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNP 478

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP---KTFAPNSRIYT 217
              +   L      ++   D      + E+L  + +   +   L+        P+   Y 
Sbjct: 479 --SLFLRLS---QGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYN 533

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ G+     ++   ++    R  +     PD VTY T++    +    + A +VL +M
Sbjct: 534 VLINGFCKAKNINGAFKLF---RELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQM 590

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILID 336
            + G   +   Y  L+   C++ ++  A  L L+ +      E + +    L +      
Sbjct: 591 VKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLK---LAEEHFEKG 647

Query: 337 DSAGALTFFNEMRAR----GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
           +   A+    EM  +     IAP    YT  +     + + + A K+F  +L++ ++ V+
Sbjct: 648 ELEKAVRCLLEMNFKLNNFEIAP----YTIWLIGLCQARRSEEALKIF-LVLKECQMDVN 702

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             +  ML+ G C+ G +E A  I     E GF
Sbjct: 703 PPSCVMLINGLCKDGNLEMAVDIFLYTLEKGF 734



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 121/339 (35%), Gaps = 70/339 (20%)

Query: 15  TVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKP 74
           T+V RL  SG         L     K + + +D  +V    PD   YN ++N        
Sbjct: 499 TMVERLCESG---------LILKAYKLLMQLADSGVV----PDIMTYNVLINGFCKAKNI 545

Query: 75  KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134
               +LF ++   G  PD +TY  +I    R  R+     VL+++++ G T     ++ L
Sbjct: 546 NGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCL 605

Query: 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPN 194
           +      G L +A ++            K +R L                          
Sbjct: 606 MTWSCRKGKLSVAFSLWL----------KYLRSL-------------------------- 629

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
              PS E   L             L + +  +G +   VR L  M  + +N    +   Y
Sbjct: 630 ---PSQEDETLK------------LAEEHFEKGELEKAVRCLLEMNFKLNNF---EIAPY 671

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL-LREMA 313
           T  +  L +A   + A ++   +    +  N  +  +L+ G C+   ++ A ++ L  + 
Sbjct: 672 TIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLE 731

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
               + P +   N L+   IL D    AL   N M + G
Sbjct: 732 KGFMLMPRIC--NQLLRSLILQDKMKHALDLLNRMNSAG 768


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 195/474 (41%), Gaps = 66/474 (13%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           + L    +  G KPDV T  ++I              VL  + ++G+   + TF +L+  
Sbjct: 27  ISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLING 86

Query: 138 YVGFGDLEIAETIVQAMREGRRD------------VCKIIRELDLEDYSSENEGDDDDDD 185
               G++  A     ++ +   +            +CK+        Y  + EG +   D
Sbjct: 87  LCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFD 146

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            +                            Y+T+M     +G +   +     M  +   
Sbjct: 147 LLIA--------------------------YSTIMDSLCKDGMLCLALNFFSGMTCK--- 177

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD V Y +++  L   G  + A  +L  M R G+  N  T+N+L+  +C++ +I +A
Sbjct: 178 GIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRA 237

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           K ++  M     +EPDVV+YN +I G  L+     A+  F  M  +G+ P  ++Y++L+ 
Sbjct: 238 KTIMCFMVH-VGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIH 296

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            +  +     A  V DEM+ +  + +D+V W+ L+ G+C+ G  E A  +   M E+   
Sbjct: 297 GWCKTRNINKAIFVLDEMVNNG-LNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQL 355

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKE----------------RCEVKKEGVNADS 469
           PN+ T   + +G+   +   EA+ L++++++                 C   K   N   
Sbjct: 356 PNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGK--FNDAR 413

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKAL-----EIVACMEEHGIPPNKTKYK 518
           +L   L      +D +A   +     ++ L     +++  MEE+G PPN+  Y 
Sbjct: 414 ELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYN 467



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 195/468 (41%), Gaps = 70/468 (14%)

Query: 34  LFDVVVKRVRKFSDPDIVSDS-----KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           LF V+VK     +   ++  +     KPD      V+N   +L        +   M + G
Sbjct: 13  LFGVIVKMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIG 72

Query: 89  AKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
            +P V+T+  +I  LCA  +      F  + + +MG      T  +++      GD   A
Sbjct: 73  VEPTVVTFATLINGLCAEGNVGAAARFA-DSLEDMGYESNSYTHGTIINGLCKVGDTAGA 131

Query: 148 ETIVQAMREGRR--------------DVCK-IIRELDLEDYSSENEGDDDDDDEVFEKLL 192
            + ++ + EGR                +CK  +  L L  +S         D   +  L+
Sbjct: 132 ISYLEKI-EGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLI 190

Query: 193 PN--SINPSSEPP-----LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
               S    +E       ++ K   PN + +  L+  +  EG++S    ++  M      
Sbjct: 191 HGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHV--- 247

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD VTY +V+S       M+ A +V   M   G+  N +TY+ L+ G+C+   I+KA
Sbjct: 248 GVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKA 307

Query: 306 KELLREMADDAKIEPDVVSYNILIDGF-----------------------------ILID 336
             +L EM ++  +  DVV+++ LI GF                             I++D
Sbjct: 308 IFVLDEMVNNG-LNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILD 366

Query: 337 D------SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                   + A++ F +M    +    ++Y  ++       +   A ++F   L    ++
Sbjct: 367 GLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELF-SCLPSKGIQ 425

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           +D+VA+  +++G C+ GL+++A+ ++ +M+ENG  PN  TY  L  G+
Sbjct: 426 IDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGL 473



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 143/337 (42%), Gaps = 42/337 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G +P+V+ ++ +V      G     +++  F V V               +PD   
Sbjct: 209 MMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHV-------------GVEPDVVT 255

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+V++    L +    +++F+ M   G  P+V+TY+ +I    +    +  +FVL+ ++
Sbjct: 256 YNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMV 315

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR----DVCKIIRE-LDLEDYSS 175
             G+ L + T+ +L+  +   G  E A  +   M E  +      C II + L    + S
Sbjct: 316 NNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHS 375

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E          +F K+   ++               N   Y  ++ G  + G+ +D   +
Sbjct: 376 E-------AISLFRKMEKMNLE-------------LNIVTYNIVLDGMCSFGKFNDAREL 415

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              +  +       D V YTT++  L K G +D A  +L +M   G P N  TYN+L++G
Sbjct: 416 FSCLPSK---GIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRG 472

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
             Q+  I ++ + L  M     +  D  +  +LI  F
Sbjct: 473 LLQRYDISRSTKYLMLMKGKG-LSADATTTELLISYF 508



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 21/274 (7%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  T T V++ L           VL  M +IGV    +T+  L+ G C +  +  A   
Sbjct: 40  PDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARF 99

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN--EMRARGIAPTKISYTTLMKA 366
              + +D   E +  ++  +I+G   + D+AGA+++    E R RG     I+Y+T+M +
Sbjct: 100 ADSL-EDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGF-DLLIAYSTIMDS 157

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
                   LA   F  M     ++ D+VA+N L+ G C  G   EA  ++  M   G  P
Sbjct: 158 LCKDGMLCLALNFFSGM-TCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMP 216

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           NV T+  L +      K   A    K I   C +   GV  D      +     LL  + 
Sbjct: 217 NVQTFNVLVDNFCKEGKISRA----KTI--MCFMVHVGVEPDVVTYNSVISGHCLLSQMN 270

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D          A+++   M   G+ PN   Y  +
Sbjct: 271 D----------AVKVFELMIHKGLLPNVVTYSSL 294


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 193/463 (41%), Gaps = 36/463 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    Y  +++  A  G        F+ M     KP+V  Y  +I   A A      V 
Sbjct: 14  KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 73

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             E +L  GI L    F S+++ Y   G+ E AE   +  +        I+    ++ Y 
Sbjct: 74  CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYC 133

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                    + E  E LL           +  + F  N  +YTT++ G+     + D  +
Sbjct: 134 QAG------NMETVEALLAQ---------MEEEGFQGNLGLYTTVLNGF---AEIRDEEK 175

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            L    R +     P   TY  +V    KAG+M +A  +L EM + GV  N++ Y +++ 
Sbjct: 176 CLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMD 235

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GY +      A ++  +M   A ++PD+V YNIL+  F        AL     + A  + 
Sbjct: 236 GYARGGDFTAAFKVWEDMVS-AGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLL 294

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT  +YT+++  +      + A +VFD  ++   ++  +V++N L+ G  +   +E A+ 
Sbjct: 295 PTIETYTSILDGYVKGGNIQKALEVFDR-IKTAGLRPGVVSYNSLLSGLAKARQMENARL 353

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M  NG  PN  +Y +L  G + A    +A  +++ +K+                  
Sbjct: 354 MLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKE----------------N 397

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           L  D     AL   C ++   ++A E+   + + G+  N+  Y
Sbjct: 398 LAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITY 440



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 193/434 (44%), Gaps = 33/434 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G   +   + +++S  A++G++   E             KF   ++V    P    
Sbjct: 78  MLSQGIQLNEAVFCSIISGYASAGNNEAAE---------HWFEKFKAENLV----PGGIV 124

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++ A    G  +    L  QM E G + ++  Y  ++   A    +   +    R+ 
Sbjct: 125 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 184

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G++    T+  +V  +   G++  A  I++ M +      K+I  + ++ Y+    GD
Sbjct: 185 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYA--RGGD 242

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                +V+E ++   + P             +  IY  L+  +   GR+    + LG + 
Sbjct: 243 FTAAFKVWEDMVSAGLKP-------------DIVIYNILVHAFCKAGRMD---KALGVLE 286

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E N   P   TYT+++   VK G++ +A +V   +   G+    ++YN LL G  +  
Sbjct: 287 NIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKAR 346

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q++ A+ +L EM  +  + P+  SY  L +G+    D   A   F  M+   +A   ++Y
Sbjct: 347 QMENARLMLNEMLANGVV-PNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAY 405

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S   + A +VF + + D  +K + + +  +++G+ R G + +A+ ++  M+
Sbjct: 406 GALLKACCKSGAMQRAAEVFQQ-ITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQ 464

Query: 421 ENGFYPNVATYGSL 434
           ++GF+ +   Y S 
Sbjct: 465 KHGFHLDTICYTSF 478



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 22/348 (6%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  +++  A  G      ++++ M   G KPD++ YN+++    +A R    + V
Sbjct: 225 PNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGV 284

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYS 174
           LE I    +   + T+ S++  YV  G+++ A  +   ++  G R          +  Y+
Sbjct: 285 LENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRP--------GVVSYN 336

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S   G          +L+ N         +L     PN R YT L +GY    R  D  +
Sbjct: 337 SLLSGLAKARQMENARLMLN--------EMLANGVVPNERSYTALTEGY---ARAGDVEK 385

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
             G  +R +      D V Y  ++ A  K+G+M RA +V  ++T  G+  NRITY  +L 
Sbjct: 386 AFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLD 445

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ ++ ++ KA++LL +M        D + Y   I       D+         MR + + 
Sbjct: 446 GWARKGELSKARDLLNDMQKHG-FHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLE 504

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
               +YTTL+  +  ++ P  A   + E  +   +++D    N L+ G
Sbjct: 505 VNARTYTTLIHGWLAAADPDQAISCY-EQAKASGLQLDSALSNCLLSG 551



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
           + I+P+V  Y  LI  +    D  GA+    EM ++GI   +  + +++  +A +   + 
Sbjct: 46  SHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEA 105

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A   F++   +  V   IV +N +V+ YC+ G +E  + ++ +M+E GF  N+  Y ++ 
Sbjct: 106 AEHWFEKFKAENLVPGGIV-YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVL 164

Query: 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF 495
           NG +  R   + L  +  +K                   L P       +  +  +A   
Sbjct: 165 NGFAEIRDEEKCLSFFHRLK----------------ACGLSPTAATYGCIVKLFTKAGNM 208

Query: 496 RKALEIVACMEEHGIPPNKTKYKKI 520
            KAL+I+  M++HG+ PNK  Y  I
Sbjct: 209 AKALDILEEMDKHGVSPNKMIYAMI 233



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 124/314 (39%), Gaps = 64/314 (20%)

Query: 211 PNSRIYTTLMKGYMN----EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           PN  IYT+L+  Y      EG V+ T  ML             +   + +++S    AG+
Sbjct: 50  PNVHIYTSLIHAYAEARDMEGAVACTEEML-------SQGIQLNEAVFCSIISGYASAGN 102

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
            + A     +     +    I YN +++ YCQ   ++  + LL +M ++   + ++  Y 
Sbjct: 103 NEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG-FQGNLGLYT 161

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +++GF  I D    L+FF+ ++A G++PT  +Y  ++K F                   
Sbjct: 162 TVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFT------------------ 203

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
                             + G + +A  I+E M ++G  PN   Y  + +G +       
Sbjct: 204 ------------------KAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTA 245

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A  +W+++                +   LKPD  + + L     +A    KAL ++  +E
Sbjct: 246 AFKVWEDM----------------VSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIE 289

Query: 507 EHGIPPNKTKYKKI 520
            + + P    Y  I
Sbjct: 290 ANRLLPTIETYTSI 303



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G +P+ ++++ +    A +GD   VE  K F +  +R++K        +   D  A
Sbjct: 358 MLANGVVPNERSYTALTEGYARAGD---VE--KAFGMF-QRMKK-------ENLAIDIVA 404

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+L AC   G  ++  ++F Q+ + G K + +TY  M+   AR         +L  + 
Sbjct: 405 YGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQ 464

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
           + G  L    + S + A    GD E     +  MRE + +V
Sbjct: 465 KHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEV 505


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 189/409 (46%), Gaps = 22/409 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ VLN   N  K +    LF++M   G   DV TY +M+    +A         
Sbjct: 440 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 499

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVC--KIIRELDLED 172
              + E+G T  + T+ +L+ AY+    +  A  + + M  EG    C   I+    L D
Sbjct: 500 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG----CLPNIVTYSALID 555

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF-----APNSRIYTTLMKGYMNEG 227
              +  G  +   ++FE++  +   P  +  +  K +      PN   Y  L+ G+    
Sbjct: 556 GHCK-AGQVEKACQIFERMCGSKDVPDVD--MYFKQYDDNSERPNVVTYGALLDGFCKSH 612

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           RV +  ++L AM  +      P+ + Y  ++  L K G +D A++V  EM+  G PA   
Sbjct: 613 RVEEARKLLDAMSME---GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLY 669

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY+ L+  Y +  + D A ++L +M +++   P+VV Y  +IDG   +  +  A      
Sbjct: 670 TYSSLIDRYFKVKRQDLASKVLSKMLENS-CAPNVVIYTEMIDGLCKVGKTDEAYKLMQM 728

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +G  P  ++YT ++  F +  + +   ++ + M     V  + V + +L++  C+ G
Sbjct: 729 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERM-GSKGVAPNYVTYRVLIDHCCKNG 787

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            ++ A  ++E MK+  +  + A Y  +  G +  ++  E+L L  EI +
Sbjct: 788 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFN--KEFIESLGLLDEIGQ 834



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/507 (21%), Positives = 209/507 (41%), Gaps = 69/507 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LV 113
           PDT  Y  +++        ++ +   ++M      P+V+TY+ +  LC   ++K L    
Sbjct: 259 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTL--LCGCLNKKQLGRCK 316

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  ++  G       F SLV AY   GD   A  +++ M +       ++  + +   
Sbjct: 317 RVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI 376

Query: 174 SSENEGDDDDDDEVFEK---------LLPNSINPSSEP-----------------PLLPK 207
             + +  + D  ++ EK         ++ N IN SS                    ++ +
Sbjct: 377 CGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 436

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
            F P++  Y+ ++    N  ++     +   M+R        D  TYT +V +  KAG +
Sbjct: 437 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR---GGLVADVYTYTIMVDSFCKAGLI 493

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           ++AR+   EM  +G   N +TY  L+  Y +  ++  A EL   M  +  + P++V+Y+ 
Sbjct: 494 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL-PNIVTYSA 552

Query: 328 LIDGFILIDDSAGALTFFNEMRA----------------RGIAPTKISYTTLMKAFALSS 371
           LIDG         A   F  M                      P  ++Y  L+  F  S 
Sbjct: 553 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 612

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           + + A K+ D M  +   + + + ++ L++G C++G ++EA+ +   M E+GF   + TY
Sbjct: 613 RVEEARKLLDAMSMEG-CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTY 671

Query: 432 GSLANG-ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
            SL +    + R+   + +L K ++  C              P +    E++D L     
Sbjct: 672 SSLIDRYFKVKRQDLASKVLSKMLENSC-------------APNVVIYTEMIDGLC---- 714

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKY 517
           +     +A +++  MEE G  PN   Y
Sbjct: 715 KVGKTDEAYKLMQMMEEKGCQPNVVTY 741



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 195/444 (43%), Gaps = 37/444 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G++P    ++ ++  +    D     +  L D+  K   +     +V + K + ++
Sbjct: 357 MVKCGHMPGYVVYNILIGSICGDKDS---LNFDLLDLAEKAYSEMLAAGVVLN-KINVSS 412

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +   L    + GK +K   +  +M   G  PD  TY+ ++     AS+  L   + E + 
Sbjct: 413 FTRCL---CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMK 469

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + T+  +V ++   G +E A      MRE       +     +  Y    +  
Sbjct: 470 RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKV- 528

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV----RML 236
               +E+FE +L       SE  L      PN   Y+ L+ G+   G+V        RM 
Sbjct: 529 -SYANELFETML-------SEGCL------PNIVTYSALIDGHCKAGQVEKACQIFERMC 574

Query: 237 GA---------MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           G+          ++ +DN+  P+ VTY  ++    K+  ++ AR++L  M+  G   N+I
Sbjct: 575 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQI 634

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            Y+ L+ G C+  ++D+A+E+  EM++       + +Y+ LID +  +     A    ++
Sbjct: 635 VYDALIDGLCKVGKLDEAQEVKTEMSEHG-FPATLYTYSSLIDRYFKVKRQDLASKVLSK 693

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M     AP  + YT ++       +   A K+  +M+ +   + ++V +  +++G+  +G
Sbjct: 694 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM-QMMEEKGCQPNVVTYTAMIDGFGMIG 752

Query: 408 LVEEAKRIIERMKENGFYPNVATY 431
            +E    ++ERM   G  PN  TY
Sbjct: 753 KIETCLELLERMGSKGVAPNYVTY 776



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 155/367 (42%), Gaps = 78/367 (21%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL------VKA 264
           P+ +I+ +L+  Y   G  S   ++L  M +       P +V Y  ++ ++      +  
Sbjct: 329 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK---CGHMPGYVVYNILIGSICGDKDSLNF 385

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM------------ 312
             +D A +  +EM   GV  N+I  +   +  C   + +KA  ++REM            
Sbjct: 386 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 445

Query: 313 -------ADDAKIE---------------PDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
                   + +K+E                DV +Y I++D F        A  +FNEMR 
Sbjct: 446 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 505

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G  P  ++YT L+ A+  + +   AN++F+ ML +  +  +IV ++ L++G+C+ G VE
Sbjct: 506 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP-NIVTYSALIDGHCKAGQVE 564

Query: 411 EAKRIIERM----------------KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +A +I ERM                 +N   PNV TYG+L +G   + +  EA  L   +
Sbjct: 565 KACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM 624

Query: 455 K-ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
             E CE                 P++ + DAL D   +     +A E+   M EHG P  
Sbjct: 625 SMEGCE-----------------PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 667

Query: 514 KTKYKKI 520
              Y  +
Sbjct: 668 LYTYSSL 674



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 184/458 (40%), Gaps = 68/458 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIV------SD 53
           ML  G LP++  +S ++     +G    VE + ++F+ +    +   D D+       + 
Sbjct: 538 MLSEGCLPNIVTYSALIDGHCKAGQ---VEKACQIFERMCGS-KDVPDVDMYFKQYDDNS 593

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +P+   Y A+L+      + ++  +L D M   G +P+ + Y+ +I    +  +     
Sbjct: 594 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 653

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V   + E G    + T+ SL+  Y                        K+ R+      
Sbjct: 654 EVKTEMSEHGFPATLYTYSSLIDRYF-----------------------KVKRQ------ 684

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                   D   +V  K+L NS              APN  IYT ++ G    G+  +  
Sbjct: 685 --------DLASKVLSKMLENSC-------------APNVVIYTEMIDGLCKVGKTDEAY 723

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           ++   M+  E+    P+ VTYT ++      G ++   ++L  M   GV  N +TY +L+
Sbjct: 724 KL---MQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 780

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+   +D A  LL EM            Y  +I+GF    +   +L   +E+     
Sbjct: 781 DHCCKNGALDVAHNLLEEM-KQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDT 837

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA-WNMLVEGYCRMGLVEEA 412
           AP    Y  L+     + + ++A ++ +E+       VD  + +N L+E  C    VE A
Sbjct: 838 APFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETA 897

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++   M + G  P + ++ SL  G+    K  EALLL
Sbjct: 898 FQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLL 935



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 131/342 (38%), Gaps = 33/342 (9%)

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DDD++V E+ L    +   E       F    +    L++ +   G  S  +  LG   R
Sbjct: 137 DDDEKVPEEFLQQIRDDDKE------VFG---QFLNVLVRKHCRNGSFSIALEELG---R 184

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            +D    P   TY  ++ A +KA  +D A  +  EM+   +  +  T        C   +
Sbjct: 185 LKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLC---K 241

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + K +E L  + +     PD V Y  LI G         A+ F N MRA    P  ++Y+
Sbjct: 242 VGKWREAL-TLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYS 300

Query: 362 TLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           TL+       Q     +V + M+ +   P  K+    +N LV  YC  G    A +++++
Sbjct: 301 TLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI----FNSLVHAYCTSGDHSYAYKLLKK 356

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M + G  P    Y  L   I   +      LL    K   E+   GV            +
Sbjct: 357 MVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVL----------N 406

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +  + +       A  + KA  ++  M   G  P+ + Y K+
Sbjct: 407 KINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKV 448


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 189/440 (42%), Gaps = 71/440 (16%)

Query: 11  KAWST---VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           ++W T   V+  LA   DDG       FD   K + +  + +I     P T  ++ ++ A
Sbjct: 94  RSWVTHNLVIDMLAK--DDG-------FDTYWKILEELKNSNI--QIPPPT--FSVLIAA 140

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
            A  G  +K ++ F +M +FG KPDV TYN ++ +  +     L + V  ++L++     
Sbjct: 141 YAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPN 200

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             TF  L+                         +CK               G  DD  ++
Sbjct: 201 RATFVILLNG-----------------------LCK--------------NGKTDDALKM 223

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F+++    I              PN+ IYT ++ G     R  D  R+L  M+    +  
Sbjct: 224 FDEMTQKGI-------------PPNTMIYTIILSGLCQAKRTDDVHRLLNTMKV---SGC 267

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            PD +T   ++    K G +D A  +L    + G       Y+ L+ G  +  + D+ +E
Sbjct: 268 CPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQE 327

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
             R+M   A IEPDVV Y ILI GF  +     AL   N+M  RG++P    Y  L+K F
Sbjct: 328 WCRKMFK-AGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGF 386

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                   A  +  E+ ++         + +L+ G CR GL++EA++I  +M+  G  P+
Sbjct: 387 CDVGLLDKARSLQLEISKNDCFPTS-CTYTILICGMCRNGLLDEARQIFNQMENLGCSPS 445

Query: 428 VATYGSLANGISLARKPGEA 447
           + T+ +L +G+  A +  EA
Sbjct: 446 IMTFNALIDGLCKAGELEEA 465



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 14/276 (5%)

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DD  + + K+L    N + + P  P TF       + L+  Y   G     V   G M+ 
Sbjct: 109 DDGFDTYWKILEELKNSNIQIP--PPTF-------SVLIAAYAKSGMAEKAVESFGKMK- 158

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
             D    PD  TY +++  +V+      A  V  +M ++    NR T+ ILL G C+  +
Sbjct: 159 --DFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
            D A ++  EM     I P+ + Y I++ G      +       N M+  G  P  I+  
Sbjct: 217 TDDALKMFDEMTQKG-IPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCN 275

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            L+  F    Q   A  +     ++  V + I  ++ L++G  R    +E +    +M +
Sbjct: 276 ALLDGFCKLGQIDEAFALLQLFEKEGYV-LGIKGYSSLIDGLFRAKRYDEVQEWCRKMFK 334

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            G  P+V  Y  L  G         AL +  ++ +R
Sbjct: 335 AGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQR 370



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/465 (21%), Positives = 176/465 (37%), Gaps = 106/465 (22%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+ A +  +LN     GK    L++FD+M + G  P+ + Y +++    +A R   +  +
Sbjct: 199 PNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRL 258

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
           L  +   G      T  +L+  +   G ++ A  ++Q   +EG          L ++ YS
Sbjct: 259 LNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYV--------LGIKGYS 310

Query: 175 SENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           S  +G       D+  E   K+    I P             +  +YT L++G+   G V
Sbjct: 311 SLIDGLFRAKRYDEVQEWCRKMFKAGIEP-------------DVVLYTILIRGFCEVGMV 357

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
              + ML  M ++      PD   Y  ++      G +D+AR +  E+++        TY
Sbjct: 358 DYALNMLNDMTQR---GLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTY 414

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG------------------ 331
            IL+ G C+   +D+A+++  +M ++    P ++++N LIDG                  
Sbjct: 415 TILICGMCRNGLLDEARQIFNQM-ENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKME 473

Query: 332 ------------------------FILIDDSAGALTFFNEMRARGIAPTKISYTTLMK-- 365
                                   F  +D    A    ++M   G  P+   Y  LM   
Sbjct: 474 IGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWS 533

Query: 366 --------AFAL-----SSQP-------KLANKVFDEMLRDPRVKV-----------DIV 394
                   AF+L      S P       KLA + F++   +  V+            +I 
Sbjct: 534 CRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIA 593

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            + + + G C+    EEA +I   +KE     N  +   L NG+ 
Sbjct: 594 PYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLC 638



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 80/204 (39%), Gaps = 37/204 (18%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VT+  V+  L K    D   ++L E+    +     T+++L+  Y +    +KA E   +
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M D    +PDV +YN ++   +  +    AL  +N+M      P + ++           
Sbjct: 157 MKDFG-CKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFV---------- 205

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
                                     +L+ G C+ G  ++A ++ + M + G  PN   Y
Sbjct: 206 --------------------------ILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIY 239

Query: 432 GSLANGISLARKPGEALLLWKEIK 455
             + +G+  A++  +   L   +K
Sbjct: 240 TIILSGLCQAKRTDDVHRLLNTMK 263



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 83/419 (19%), Positives = 166/419 (39%), Gaps = 69/419 (16%)

Query: 3   RSGYLPHVKAWSTVVSRL--AASGDDGPVESVKLF------DVVVKRV--RKFSDPDIVS 52
           + GY+  +K +S+++  L  A   D+      K+F      DVV+  +  R F +  +V 
Sbjct: 299 KEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVD 358

Query: 53  DS------------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
            +             PDT  YNA++    ++G   K   L  ++ +    P   TY ++I
Sbjct: 359 YALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILI 418

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
               R         +  ++  +G +  + TF +L+      G+LE A  +   M  G+  
Sbjct: 419 CGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNP 478

Query: 161 --VCKIIRELD-LEDYSSENEGDDDDDD--EVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
               ++ +  D + D ++     D ++D   V ++++ N   PSS              +
Sbjct: 479 SLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSA-------------V 525

Query: 216 YTTLMKGYMNEGRVSDT----VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           Y  LM     +G++S      ++ L ++  QED            +     + G +++A 
Sbjct: 526 YKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDET--------LKLAEEHFEKGELEKAV 577

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           + L EM           Y I L G CQ  + ++A ++   +  + +++ +  S  +LI+G
Sbjct: 578 RCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVL-KECQMDVNPPSCVMLING 636

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                +   A+  F                TL K F L   P++ N++   ++   ++K
Sbjct: 637 LCKDGNLEMAVDIF--------------LYTLEKGFML--MPRICNQLLRSLILQDKMK 679



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           V++N++ID     D          E++   I     +++ L+ A+A S   + A + F +
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M +D   K D+  +N ++    +  +   A  +  +M +  + PN AT+  L NG+    
Sbjct: 157 M-KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNG 215

Query: 443 KPGEALLLWKEIKER 457
           K  +AL ++ E+ ++
Sbjct: 216 KTDDALKMFDEMTQK 230


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 189/409 (46%), Gaps = 22/409 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ VLN   N  K +    LF++M   G   DV TY +M+    +A         
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVC--KIIRELDLED 172
              + E+G T  + T+ +L+ AY+    +  A  + + M  EG    C   I+    L D
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG----CLPNIVTYSALID 596

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF-----APNSRIYTTLMKGYMNEG 227
              +  G  +   ++FE++  +   P  +  +  K +      PN   Y  L+ G+    
Sbjct: 597 GHCK-AGQVEKACQIFERMCGSKDVPDVD--MYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           RV +  ++L AM  +      P+ + Y  ++  L K G +D A++V  EM+  G PA   
Sbjct: 654 RVEEARKLLDAMSME---GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLY 710

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TY+ L+  Y +  + D A ++L +M +++   P+VV Y  +IDG   +  +  A      
Sbjct: 711 TYSSLIDRYFKVKRQDLASKVLSKMLENS-CAPNVVIYTEMIDGLCKVGKTDEAYKLMQM 769

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +G  P  ++YT ++  F +  + +   ++ + M     V  + V + +L++  C+ G
Sbjct: 770 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERM-GSKGVAPNYVTYRVLIDHCCKNG 828

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            ++ A  ++E MK+  +  + A Y  +  G +  ++  E+L L  EI +
Sbjct: 829 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFN--KEFIESLGLLDEIGQ 875



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 112/507 (22%), Positives = 210/507 (41%), Gaps = 69/507 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LV 113
           PDT  Y  +++        ++ +   ++M      P+V+TY+ +  LC   ++K L    
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTL--LCGCLNKKQLGRCK 357

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            VL  ++  G       F SLV AY   GD   A  +++ M +       ++  + +   
Sbjct: 358 RVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI 417

Query: 174 SSENEGDDDDDDEVFEK---------LLPNSINPSSEP-----------------PLLPK 207
             + +  + D  ++ EK         ++ N IN SS                    ++ +
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 477

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
            F P++  Y+ ++    N  ++     +   M+R    A   D  TYT +V +  KAG +
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA---DVYTYTIMVDSFCKAGLI 534

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           ++AR+   EM  +G   N +TY  L+  Y +  ++  A EL   M  +  + P++V+Y+ 
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL-PNIVTYSA 593

Query: 328 LIDGFILIDDSAGALTFFNEMRA----------------RGIAPTKISYTTLMKAFALSS 371
           LIDG         A   F  M                      P  ++Y  L+  F  S 
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           + + A K+ D M  +   + + + ++ L++G C++G ++EA+ +   M E+GF   + TY
Sbjct: 654 RVEEARKLLDAMSMEG-CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTY 712

Query: 432 GSLANG-ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
            SL +    + R+   + +L K ++  C              P +    E++D L     
Sbjct: 713 SSLIDRYFKVKRQDLASKVLSKMLENSC-------------APNVVIYTEMIDGLC---- 755

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKY 517
           +     +A +++  MEE G  PN   Y
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTY 782



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 155/367 (42%), Gaps = 78/367 (21%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL------VKA 264
           P+ +I+ +L+  Y   G  S   ++L  M +       P +V Y  ++ ++      +  
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK---CGHMPGYVVYNILIGSICGDKDSLNC 426

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM------------ 312
             +D A +  +EM   GV  N+I  +   +  C   + +KA  ++REM            
Sbjct: 427 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 486

Query: 313 -------ADDAKIE---------------PDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
                   + +K+E                DV +Y I++D F        A  +FNEMR 
Sbjct: 487 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G  P  ++YT L+ A+  + +   AN++F+ ML +  +  +IV ++ L++G+C+ G VE
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP-NIVTYSALIDGHCKAGQVE 605

Query: 411 EAKRIIERM----------------KENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +A +I ERM                 +N   PNV TYG+L +G   + +  EA  L   +
Sbjct: 606 KACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM 665

Query: 455 K-ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
             E CE                 P++ + DAL D   +     +A E+   M EHG P  
Sbjct: 666 SMEGCE-----------------PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPAT 708

Query: 514 KTKYKKI 520
              Y  +
Sbjct: 709 LYTYSSL 715



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 195/444 (43%), Gaps = 37/444 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G++P    ++ ++  +    D     +  L D+  K   +     +V + K + ++
Sbjct: 398 MVKCGHMPGYVVYNILIGSICGDKDS---LNCDLLDLAEKAYSEMLAAGVVLN-KINVSS 453

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +   L    + GK +K   +  +M   G  PD  TY+ ++     AS+  L   + E + 
Sbjct: 454 FTRCL---CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMK 510

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + T+  +V ++   G +E A      MRE       +     +  Y    +  
Sbjct: 511 RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKV- 569

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV----RML 236
               +E+FE +L       SE  L      PN   Y+ L+ G+   G+V        RM 
Sbjct: 570 -SYANELFETML-------SEGCL------PNIVTYSALIDGHCKAGQVEKACQIFERMC 615

Query: 237 GA---------MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           G+          ++ +DN+  P+ VTY  ++    K+  ++ AR++L  M+  G   N+I
Sbjct: 616 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQI 675

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            Y+ L+ G C+  ++D+A+E+  EM++       + +Y+ LID +  +     A    ++
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHG-FPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M     AP  + YT ++       +   A K+  +M+ +   + ++V +  +++G+  +G
Sbjct: 735 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM-QMMEEKGCQPNVVTYTAMIDGFGMIG 793

Query: 408 LVEEAKRIIERMKENGFYPNVATY 431
            +E    ++ERM   G  PN  TY
Sbjct: 794 KIETCLELLERMGSKGVAPNYVTY 817



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 184/458 (40%), Gaps = 68/458 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIV------SD 53
           ML  G LP++  +S ++     +G    VE + ++F+ +    +   D D+       + 
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQ---VEKACQIFERMCGS-KDVPDVDMYFKQYDDNS 634

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +P+   Y A+L+      + ++  +L D M   G +P+ + Y+ +I    +  +     
Sbjct: 635 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 694

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V   + E G    + T+ SL+  Y                        K+ R+      
Sbjct: 695 EVKTEMSEHGFPATLYTYSSLIDRYF-----------------------KVKRQ------ 725

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                   D   +V  K+L NS              APN  IYT ++ G    G+  +  
Sbjct: 726 --------DLASKVLSKMLENSC-------------APNVVIYTEMIDGLCKVGKTDEAY 764

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           ++   M+  E+    P+ VTYT ++      G ++   ++L  M   GV  N +TY +L+
Sbjct: 765 KL---MQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 821

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+   +D A  LL EM            Y  +I+GF    +   +L   +E+     
Sbjct: 822 DHCCKNGALDVAHNLLEEM-KQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDT 878

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA-WNMLVEGYCRMGLVEEA 412
           AP    Y  L+     + + ++A ++ +E+       VD  + +N L+E  C    VE A
Sbjct: 879 APFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETA 938

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            ++   M + G  P + ++ SL  G+    K  EALLL
Sbjct: 939 FQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLL 976



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 126/342 (36%), Gaps = 48/342 (14%)

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DDD EVF + L                          L++ +   G  S  +  LG   R
Sbjct: 193 DDDKEVFGEFL------------------------NVLVRKHCRNGSFSIALEELG---R 225

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            +D    P   TY  ++ A +KA  +D A  +  EM+   +  +  T        C   +
Sbjct: 226 LKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLC---K 282

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + K +E L  + +     PD V Y  LI G         A+ F N MRA    P  ++Y+
Sbjct: 283 VGKWREAL-TLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYS 341

Query: 362 TLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           TL+       Q     +V + M+ +   P  K+    +N LV  YC  G    A +++++
Sbjct: 342 TLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI----FNSLVHAYCTSGDHSYAYKLLKK 397

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M + G  P    Y  L   I   +      LL    K   E+   GV            +
Sbjct: 398 MVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVL----------N 447

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +  + +       A  + KA  ++  M   G  P+ + Y K+
Sbjct: 448 KINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKV 489


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 150/335 (44%), Gaps = 24/335 (7%)

Query: 189 EKLLPNSINPSSE---PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           +K L  S   S E   P +L   + P++   TT +KG+  +G++   +     +      
Sbjct: 236 QKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAM--- 292

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
             H D V+Y T+++ L K G    A ++L       V  + + YN ++ G C+   ++ A
Sbjct: 293 GFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDA 352

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +L  E     +I PDV +YN LI GF ++     A+  FN+M ++ I P   +++ L+ 
Sbjct: 353 FDLYSEKVS-KRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVD 411

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            F      K A  V   M++   +K D+V ++ L++GYC +  V +A+ I   M   G  
Sbjct: 412 GFCKDGNIKEAKNVLAMMMKQS-IKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVT 470

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
            NV +Y  + NG    +   EA+ L+KE+  +                 + PD     +L
Sbjct: 471 ANVQSYNIMINGFCKIKMVDEAMKLFKEMHHK----------------QIFPDVITYSSL 514

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            D   ++     ALE+V  M   G  P+   Y  I
Sbjct: 515 IDGLCKSGRISYALELVDEMHYRGQQPDIITYNSI 549



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 186/406 (45%), Gaps = 74/406 (18%)

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G +PD +T    IK      + H  +   ++++ MG  L   ++ +L+      G+ + A
Sbjct: 258 GYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAA 317

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSS----------ENEGDDDDDDEVFEKLLPNSIN 197
             ++      RR+  K+++  D+  Y++           N+  D   ++V +++ P+   
Sbjct: 318 LELL------RRNDGKLVQP-DVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFT 370

Query: 198 PSSEPP-----------------LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            ++                    +  K   P+   ++ L+ G+  +G + +   +L  M 
Sbjct: 371 YNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMM 430

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q   +  PD VTY++++        +++A  +   M+  GV AN  +YNI++ G+C+  
Sbjct: 431 KQ---SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIK 487

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFI----------LIDDSA----------- 339
            +D+A +L +EM    +I PDV++Y+ LIDG            L+D+             
Sbjct: 488 MVDEAMKLFKEM-HHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITY 546

Query: 340 --------------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
                          A+T   +++ +GI P   +YT L+K    S + + A KVF+++L 
Sbjct: 547 NSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLV 606

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
                +D+ A+ ++++G+C  GL +EA  ++ +M+ENG  P+  TY
Sbjct: 607 KGY-NLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTY 651



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 158/340 (46%), Gaps = 24/340 (7%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   P+  +Y T++ G   +  V+D   +      +      PD  TY  ++S     G 
Sbjct: 327 KLVQPDVVMYNTIIDGMCKDKHVNDAFDLYS---EKVSKRIFPDVFTYNALISGFCIVGK 383

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A  +  +MT   +  +  T++IL+ G+C+   I +AK +L  M   + I+PDVV+Y+
Sbjct: 384 LKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQS-IKPDVVTYS 442

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            L+DG+ L+++   A + FN M  RG+     SY  ++  F        A K+F EM   
Sbjct: 443 SLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEM-HH 501

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
            ++  D++ ++ L++G C+ G +  A  +++ M   G  P++ TY S+ + +       +
Sbjct: 502 KQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDK 561

Query: 447 ALLLWKEIKER--------CEVKKEGVNADSDLPPPLKPDEEL------LDALADICVRA 492
           A+ L  ++K +          +  +G+     L    K  E+L      LD  A   +  
Sbjct: 562 AITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQ 621

Query: 493 AF-----FRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
            F     F +AL +++ MEE+G  P+   Y+ I + +  +
Sbjct: 622 GFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEK 661



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 154/333 (46%), Gaps = 27/333 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   YNA+++    +GK K  + LF++M      PDV T+++++   C   + K     
Sbjct: 366 PDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKN- 424

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL  +++  I   + T+ SL+  Y    ++  AE+I   M    R V   ++  ++    
Sbjct: 425 VLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTM--SHRGVTANVQSYNIMING 482

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                  D+  ++F+++    I              P+   Y++L+ G    GR+S  + 
Sbjct: 483 FCKIKMVDEAMKLFKEMHHKQI-------------FPDVITYSSLIDGLCKSGRISYALE 529

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M  +      PD +TY +++ AL K   +D+A  +L ++   G+  +  TY IL+K
Sbjct: 530 LVDEMHYR---GQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVK 586

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRAR 351
           G CQ  +++ A+++  ++        DV +Y ++I GF    L D+   AL   ++M   
Sbjct: 587 GLCQSGKLEDARKVFEDLLVKG-YNLDVYAYTVMIQGFCDKGLFDE---ALALLSKMEEN 642

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           G  P   +Y  ++ +     +  +A K+  EM+
Sbjct: 643 GCIPDAKTYEIIILSLFEKDENDMAEKLLREMI 675



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 57/251 (22%)

Query: 32  VKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91
           +K+ D  +K  ++     I     PD   Y+++++     G+    L+L D+MH  G +P
Sbjct: 486 IKMVDEAMKLFKEMHHKQIF----PDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQP 541

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           D++TYN ++    +       + +L ++   GI   M T+  LV      G LE      
Sbjct: 542 DIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLE------ 595

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
                                          D  +VFE              LL K +  
Sbjct: 596 -------------------------------DARKVFE-------------DLLVKGYNL 611

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +   YT +++G+ ++G   + + +L  M   E+N   PD  TY  ++ +L +    D A 
Sbjct: 612 DVYAYTVMIQGFCDKGLFDEALALLSKM---EENGCIPDAKTYEIIILSLFEKDENDMAE 668

Query: 272 QVLAEMTRIGV 282
           ++L EM   G+
Sbjct: 669 KLLREMIMRGL 679


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 147/317 (46%), Gaps = 23/317 (7%)

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
           E PLL    APN   YT LM GY   G+      +   MRR       P+  TY  ++  
Sbjct: 63  EMPLLG--LAPNEVTYTALMHGYFTHGQREKGFALFEEMRR---GGVEPNLYTYNCLIGE 117

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
             + G  +RAR +  EM   G+  N ++YN L+ G C+  ++  A +LL +M       P
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLL-DMMRTEGTRP 176

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            ++++N+L+DG+      + AL FFN+M+A G  P+ ++Y  L+  F  +     AN+  
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRAL 236

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            +M ++  ++   V + +L++ + R   + +A  I+  M++ G   +  TYG L   + +
Sbjct: 237 SDM-KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
                +A  L++ + E+                 ++P   + D +     R     KAL+
Sbjct: 296 EGNMKDARKLFQSMGEK----------------GVEPSNVIYDMMIYGYGREGSSYKALK 339

Query: 501 IVACMEEHGIPPNKTKY 517
           ++  M + G+ PN   Y
Sbjct: 340 LIMEMRQKGLIPNSASY 356



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 128/291 (43%), Gaps = 20/291 (6%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G V   + ML    +  D A   D    T +V+   K G +  AR+V  EM  +G+  N 
Sbjct: 16  GDVRSALAMLARGTKSGDAA--LDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNE 73

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +TY  L+ GY    Q +K   L  EM     +EP++ +YN LI  +    +   A + F+
Sbjct: 74  VTYTALMHGYFTHGQREKGFALFEEM-RRGGVEPNLYTYNCLIGEWCRTGEFERARSLFD 132

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  RGI    +SY TL+       +   A K+ D M+R    +  I+ +N+LV+GY + 
Sbjct: 133 EMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLD-MMRTEGTRPSIITFNLLVDGYGKA 191

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
           G +  A     +MK  GF P+  TY  L  G   AR    A     ++KER         
Sbjct: 192 GKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKER--------- 242

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                   L+P +     L D   R     KA EI+A ME+ G+  +   Y
Sbjct: 243 -------GLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTY 286



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 170/423 (40%), Gaps = 70/423 (16%)

Query: 13  WSTV---VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACA 69
           W T    V RL A+GD      V+    ++ R  K  D  +      D  A  A++N C 
Sbjct: 2   WGTTAAAVRRLCAAGD------VRSALAMLARGTKSGDAAL------DVTACTALVNGCC 49

Query: 70  NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT 129
             G   +  ++FD+M   G  P+ +                                   
Sbjct: 50  KGGDVAEARRVFDEMPLLGLAPNEV----------------------------------- 74

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFE 189
           T+ +L+  Y   G  E    + + MR G  +         + ++    E         FE
Sbjct: 75  TYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGE---------FE 125

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           +    + +   E P+  +    N   Y TL+ G    G++ D  ++L  MR +    + P
Sbjct: 126 R----ARSLFDEMPV--RGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTE---GTRP 176

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
             +T+  +V    KAG M  A     +M   G   + +TYN+L+ G+C+   + +A   L
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRAL 236

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M +   +EP  V+Y ILID F   +    A      M   G+     +Y  L++A  +
Sbjct: 237 SDMKERG-LEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
               K A K+F  M  +  V+   V ++M++ GY R G   +A ++I  M++ G  PN A
Sbjct: 296 EGNMKDARKLFQSM-GEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSA 354

Query: 430 TYG 432
           +YG
Sbjct: 355 SYG 357



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 152/350 (43%), Gaps = 25/350 (7%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V   R+  D   +    P+   Y A+++     G+ +K   LF++M   G +P++ TYN 
Sbjct: 54  VAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNC 113

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EG 157
           +I    R         + + +   GI   + ++ +L+A     G L  A  ++  MR EG
Sbjct: 114 LIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEG 173

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLP--NSINPSSEPPLLPKTFAPNSRI 215
            R    I   L ++ Y    +             LP  N +  +         F P++  
Sbjct: 174 TRPSI-ITFNLLVDGYGKAGK---------MSNALPFFNQMKAAG--------FQPSAVT 215

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y  L+ G+    R  D  R   A+   ++    P  VTYT ++ +  +   M +A ++LA
Sbjct: 216 YNMLIAGFC---RARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILA 272

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M + G+  +  TY +L++  C +  +  A++L + M +   +EP  V Y+++I G+   
Sbjct: 273 GMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKG-VEPSNVIYDMMIYGYGRE 331

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             S  AL    EMR +G+ P   SY   ++      + + A  + D+M+R
Sbjct: 332 GSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVR 381



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P++  ++ ++     +G+              +R R   D   V     +  +
Sbjct: 99  MRRGGVEPNLYTYNCLIGEWCRTGE-------------FERARSLFDEMPVRGIVRNVVS 145

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++      GK     +L D M   G +P ++T+N+++    +A +    +    ++ 
Sbjct: 146 YNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMK 205

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G      T+  L+A +    D+  A   +  M+E   +  K+   + ++ ++ EN   
Sbjct: 206 AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH-- 263

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                + FE L            +       ++  Y  L++    EG + D  ++  +M 
Sbjct: 264 ---MGKAFEIL----------AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSM- 309

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    P +V Y  ++    + GS  +A +++ EM + G+  N  +Y + ++  C+  
Sbjct: 310 --GEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDD 367

Query: 301 QIDKAKELLREM 312
           +  +A+ LL +M
Sbjct: 368 KCQEAEALLDDM 379


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 182/445 (40%), Gaps = 74/445 (16%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           A + V++     G+      L D+M   G + + L YN ++    R      +  +LE +
Sbjct: 134 AASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIM 193

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              GI   + T+  LV +    GD+   E +V  M+                        
Sbjct: 194 ENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMK------------------------ 229

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                      K  A +  +YT ++  Y   G V    R     
Sbjct: 230 --------------------------AKNVAGDVYLYTAVINAYCRAGNVR---RASEVF 260

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                N   P+  TY  +++   K G M+ A  +LA+M   GV  N+I +N ++ GYC+Q
Sbjct: 261 DECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQ 320

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +D A ++   M +   IE DV +YN L  G   ++  A A T  + M  +G+ P  ++
Sbjct: 321 GMVDNALKVKAAM-EKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVT 379

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YTTL+           A ++F EM     +   +V +N++++GY + G + EA+R  + M
Sbjct: 380 YTTLISIHCKEGDMVEARRLFREMAGKGAMP-SVVTYNVMMDGYIKKGSIREAERFRKEM 438

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEVKKEGVN 466
           ++ G  P+V TY SL +G  +  K   AL L++E+K R               + KEG +
Sbjct: 439 EKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRS 498

Query: 467 A------DSDLPPPLKPDEELLDAL 485
                  D  L   L PD+ L  AL
Sbjct: 499 EEAFQLYDDMLKAGLTPDDSLYSAL 523



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 19/273 (6%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           + VV    K+G +D AR +L EM R GV  N + YN LL  Y ++    + +ELL E+ +
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELL-EIME 194

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +  IE  V +Y IL+D      D +      +EM+A+ +A     YT ++ A+  +   +
Sbjct: 195 NGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVR 254

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A++VFDE + +  ++ +   + +L+ G+C++G +E A+ ++  M+  G   N   + ++
Sbjct: 255 RASEVFDECVGNG-IEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTM 313

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            +G     + G   ++   +K +  ++K G+  D              + LA    R   
Sbjct: 314 IDGYC---RQG---MVDNALKVKAAMEKMGIELDV----------YTYNTLACGLCRVNR 357

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
             +A  ++  M E G+PPN   Y  + + +H +
Sbjct: 358 MAEAKTLLHIMIEKGVPPNYVTYTTL-ISIHCK 389



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 157/378 (41%), Gaps = 32/378 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G    V  ++ +V  L+ +GD   VE+V              D     +   D   
Sbjct: 193 MENGGIEATVGTYTILVDSLSTAGDISKVEAV-------------VDEMKAKNVAGDVYL 239

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y AV+NA    G  ++  ++FD+    G +P+  TY V+I    +  +      +L  + 
Sbjct: 240 YTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQ 299

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+      F +++  Y   G ++ A  +  AM        K+  ELD+  Y++   G 
Sbjct: 300 GRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAME-------KMGIELDVYTYNTLACGL 352

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
              +     K L +         ++ K   PN   YTTL+  +  EG + +  R+    R
Sbjct: 353 CRVNRMAEAKTLLHI--------MIEKGVPPNYVTYTTLISIHCKEGDMVEARRLF---R 401

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                 + P  VTY  ++   +K GS+  A +   EM + G+  +  TY  L+ G+C   
Sbjct: 402 EMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNG 461

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D A +L  EM      EP+VV+Y  LI G      S  A   +++M   G+ P    Y
Sbjct: 462 KVDVALKLFEEMKHRGT-EPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLY 520

Query: 361 TTLMKAFALSSQPKLANK 378
           + L+ +    ++  + +K
Sbjct: 521 SALVGSLHTDNRKDIHHK 538


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 172/384 (44%), Gaps = 34/384 (8%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR--KHLLVFVLE 117
            YNA++ ACA     +K L L  +M   G   D + Y+ +I+   R ++    +L  +  
Sbjct: 257 TYNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYA 316

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------RDVCKIIRELDLE 171
            I    I L       ++  +   GD+  A + + AM +G         +  +I  L   
Sbjct: 317 EIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFL-AMVQGNGLSPKTATLVAVITALG-- 373

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                N G  ++ + +FE+L         E  L+P+T     R Y  L+KGY+  G + D
Sbjct: 374 -----NAGRTEEAEAIFEEL--------KEGGLMPRT-----RAYNALLKGYVKTGSLKD 415

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              ++  M R   +   PD  TY+ ++ A   AG  + AR VL EM   GV  N   ++ 
Sbjct: 416 AESIVSEMER---SGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSR 472

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           +L  Y  + +  K+ ++LREM +   + PD   YN++ID F   +    AL  F+ MR  
Sbjct: 473 ILASYRDRGKWQKSFQVLREMRNSG-VSPDRHFYNVMIDTFGKCNCLDHALATFDRMRME 531

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P  +++ TL+     S     A ++F+ M ++         +N+++  +      E+
Sbjct: 532 GVQPDAVTWNTLIDCHCKSGHHNKAEELFEAM-QESGCSPCTTTYNIMINSFGEQERWED 590

Query: 412 AKRIIERMKENGFYPNVATYGSLA 435
            K ++ +M+  G   NV TY +L 
Sbjct: 591 VKTLLGKMQSQGLLANVVTYTTLG 614



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 159/383 (41%), Gaps = 62/383 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P TA   AV+ A  N G+ ++   +F+++ E G  P    YN ++K              
Sbjct: 360 PKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLK-------------- 405

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
                                 YV  G L+ AE+IV  M        +    L ++ Y+ 
Sbjct: 406 ---------------------GYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYA- 443

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            N G  +    V +++  + +              PNS +++ ++  Y + G+   + ++
Sbjct: 444 -NAGRWESARIVLKEMEASGVR-------------PNSYVFSRILASYRDRGKWQKSFQV 489

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  MR   ++   PD   Y  ++    K   +D A      M   GV  + +T+N L+  
Sbjct: 490 LREMR---NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDC 546

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+    +KA+EL   M  ++   P   +YNI+I+ F   +      T   +M+++G+  
Sbjct: 547 HCKSGHHNKAEELFEAM-QESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLA 605

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++YTTL     LS Q   A +V    +R   +K  ++  N L+  +       EA  +
Sbjct: 606 NVVTYTTL----GLSEQAINAFRV----MRADGLKPSVLVLNSLINAFGEDRRDAEAFSV 657

Query: 416 IERMKENGFYPNVATYGSLANGI 438
           ++ MKEN   P+V TY +L   +
Sbjct: 658 LQYMKENDLKPDVVTYTTLMKAL 680



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/474 (20%), Positives = 186/474 (39%), Gaps = 70/474 (14%)

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           L Y+++I    R+ + +    + +R      TL   T+ +L+ A     DLE A  ++  
Sbjct: 226 LLYSILIHALGRSEKLYEAFLLSQRQ-----TLTPLTYNALIGACARNDDLEKALNLMSR 280

Query: 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
           MR        +     ++  +  N+ D     +++ ++  + I               + 
Sbjct: 281 MRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIEL-------------DG 327

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
           ++   ++ G+   G V+  +  L  +   + N   P   T   V++AL  AG  + A  +
Sbjct: 328 QLLNDIIVGFAKSGDVNRAMSFLAMV---QGNGLSPKTATLVAVITALGNAGRTEEAEAI 384

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF- 332
             E+   G+      YN LLKGY +   +  A+ ++ EM + +   PD  +Y++LID + 
Sbjct: 385 FEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEM-ERSGFSPDEHTYSLLIDAYA 443

Query: 333 ----------ILIDDSAG------------------------ALTFFNEMRARGIAPTKI 358
                     +L +  A                         +     EMR  G++P + 
Sbjct: 444 NAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRH 503

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            Y  ++  F   +    A   FD M R   V+ D V WN L++ +C+ G   +A+ + E 
Sbjct: 504 FYNVMIDTFGKCNCLDHALATFDRM-RMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEA 562

Query: 419 MKENGFYPNVATYGSLANGIS-----------LARKPGEALLLWKEIKERCEVKKEGVNA 467
           M+E+G  P   TY  + N              L +   + LL          + ++ +NA
Sbjct: 563 MQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLGLSEQAINA 622

Query: 468 DSDL-PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              +    LKP   +L++L +         +A  ++  M+E+ + P+   Y  +
Sbjct: 623 FRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTL 676



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 144/372 (38%), Gaps = 62/372 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T AYNA+L      G  K    +  +M   G  PD  TY+++I   A A R      V
Sbjct: 395 PRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIV 454

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G+      F  ++A+Y   G  + +  +++ MR                    
Sbjct: 455 LKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR-------------------- 494

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            N G                              +P+   Y  ++  +   G+ +     
Sbjct: 495 -NSG-----------------------------VSPDRHFYNVMIDTF---GKCNCLDHA 521

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    R       PD VT+ T++    K+G  ++A ++   M   G      TYNI++  
Sbjct: 522 LATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINS 581

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           + +Q + +  K LL +M     +  +VV+Y  L  G      S  A+  F  MRA G+ P
Sbjct: 582 FGEQERWEDVKTLLGKMQSQGLL-ANVVTYTTL--GL-----SEQAINAFRVMRADGLKP 633

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           + +   +L+ AF    +   A  V   M ++  +K D+V +  L++   R+   ++   +
Sbjct: 634 SVLVLNSLINAFGEDRRDAEAFSVLQYM-KENDLKPDVVTYTTLMKALIRVEKFDKVPAV 692

Query: 416 IERMKENGFYPN 427
            E M  +G  P+
Sbjct: 693 YEEMTLSGCTPD 704



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 114/281 (40%), Gaps = 61/281 (21%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA--KELL 309
           +TY  ++ A  +   +++A  +++ M R G P++ + Y+ +++   +  + D +  +++ 
Sbjct: 256 LTYNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIY 315

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            E+  D KIE D    N +I GF    D   A++F   ++  G++P   +   ++ A   
Sbjct: 316 AEIESD-KIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGN 374

Query: 370 SSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
           + + + A  +F+E+      PR +    A+N L++GY + G +++A+ I+  M+ +GF  
Sbjct: 375 AGRTEEAEAIFEELKEGGLMPRTR----AYNALLKGYVKTGSLKDAESIVSEMERSGF-- 428

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
                                                             PDE     L 
Sbjct: 429 -------------------------------------------------SPDEHTYSLLI 439

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           D    A  +  A  ++  ME  G+ PN   + +I      R
Sbjct: 440 DAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDR 480



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 29/299 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG+ P    +S ++    A  + G  ES +   +V+K +         S  +P++  
Sbjct: 423 MERSGFSPDEHTYSLLID---AYANAGRWESAR---IVLKEME-------ASGVRPNSYV 469

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           ++ +L +  + GK +K  Q+  +M   G  PD   YNVMI    + +     +   +R+ 
Sbjct: 470 FSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMR 529

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     T+ +L+  +   G    AE + +AM+E     C     + +  +  +   +
Sbjct: 530 MEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWE 589

Query: 181 DDDD---DEVFEKLLPNSINPS----SEPP------LLPKTFAPNSRIYTTLMKGYMNEG 227
           D          + LL N +  +    SE        +      P+  +  +L+  +  + 
Sbjct: 590 DVKTLLGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDR 649

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           R ++   +L  M+   +N   PD VTYTT++ AL++    D+   V  EMT  G   +R
Sbjct: 650 RDAEAFSVLQYMK---ENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDR 705


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 188/436 (43%), Gaps = 71/436 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG+  +    +T++  L  +G    VE+++ F  + K            D  PD   
Sbjct: 83  MKSSGFEGNAVVHTTLMKGLCDAGR--VVEALEHFRAMAK------------DCAPDVMT 128

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y A+++A    GK  +   +  +M   G  PD +T++ +I  LC   S +     VLE +
Sbjct: 129 YTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFR-VLEDV 187

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           ++ G+                 G+ + A ETI+Q +      V                 
Sbjct: 188 IQRGM-----------------GNSDAAFETIIQRLCNKYNSV----------------- 213

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                  E+  K+L           ++ K F P   ++  ++ G+     +    ++L  
Sbjct: 214 -------ELASKVL---------GVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEV 257

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    +    P+  T+T +++ L KA  +  A+Q+L +M   G   N +TY+ ++ G C+
Sbjct: 258 MI---EKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCK 314

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           Q Q+D A EL + M +     P+VV++NILIDG         A   ++ MR  G AP  I
Sbjct: 315 QGQVDDAYELFQLM-ERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDII 373

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y +L+     S Q   A ++F  +        + V ++ L  GY  +G + +A RI   
Sbjct: 374 TYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSM 433

Query: 419 MKENGFYPNVATYGSL 434
           + + GF P++ATY SL
Sbjct: 434 LVDKGFSPDLATYTSL 449



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 163/385 (42%), Gaps = 90/385 (23%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  N+ ++TTLMKG  + GRV + +    AM +       PD +TYT +V AL KAG  D
Sbjct: 88  FEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD----CAPDVMTYTALVHALCKAGKFD 143

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL-----REMAD-DAKIE--- 319
            A+ +L EM   G   + +T++ L+ G C+    ++A  +L     R M + DA  E   
Sbjct: 144 EAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETII 203

Query: 320 --------------------------PDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
                                     P V+ +N++I+GF    D   A      M  +G 
Sbjct: 204 QRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGC 263

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRV--------------KVD---- 392
            P   ++T L+     +++   A ++ ++M+     P V              +VD    
Sbjct: 264 VPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYE 323

Query: 393 -------------IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
                        +V  N+L++G C+   +EEA+++  RM+E G  P++ TY SL +G+ 
Sbjct: 324 LFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLC 383

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLP-PPLKPDEELLDALADICVRAAFFRKA 498
            + +  EA  L++ I E       GV+A + +    L      L  +AD C         
Sbjct: 384 KSFQVDEAFQLFQTIPE------SGVSAANAVTYSTLFHGYAALGRMADAC--------- 428

Query: 499 LEIVACMEEHGIPPNKTKYKKIYVE 523
             I + + + G  P+   Y  + +E
Sbjct: 429 -RIFSMLVDKGFSPDLATYTSLILE 452



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 106/476 (22%), Positives = 200/476 (42%), Gaps = 42/476 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G +P+V  ++ +++ L  +   G  E+ +L + +V           +    P+   
Sbjct: 258 MIEKGCVPNVFTFTILITGLCKANRVG--EAQQLLEKMV-----------MGGCSPNVVT 304

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ V+N     G+     +LF  M      P+V+T+N++I    +A R      +  R+ 
Sbjct: 305 YSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMR 364

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEG 179
           E G    + T+ SL+        ++ A  + Q + E G      +        Y++   G
Sbjct: 365 ETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA--LG 422

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              D   +F               L+ K F+P+   YT+L+  Y    R  + V ++  M
Sbjct: 423 RMADACRIFSM-------------LVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEM 469

Query: 240 RRQEDNASHPDHV-TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
             +      P  V T + V+  L +    +RA Q+   M   G   + + YN++++G  +
Sbjct: 470 ASK----GFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 525

Query: 299 QLQIDKAKELLREMAD--DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
             + DKA  +L ++ D  D K  P   + + L++    +  +  A    ++M  RG A  
Sbjct: 526 ASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAA 585

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLR-DPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             SY  L+   +   +   A +VF+ M+   P  ++  V  N+++   C    V++A  +
Sbjct: 586 VSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTV--NVVISWLCSAAKVDDAYEL 643

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           ++RM + G  P++ T  +L  G     K G A L  K ++E  E   E  +   DL
Sbjct: 644 VQRMSKLGCCPDIETCNTLIGGYC---KSGRADLARKLLEEMTEAGLEPNDTTHDL 696



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 164/376 (43%), Gaps = 39/376 (10%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ--EDNASHPDHVTYTTVVSALV 262
           + +   PN   Y  L++G+ + G +   +++L  M+    E NA     V +TT++  L 
Sbjct: 49  MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNA-----VVHTTLMKGLC 103

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
            AG +  A +    M +   P + +TY  L+   C+  + D+A+ +LREM       PD 
Sbjct: 104 DAGRVVEALEHFRAMAKDCAP-DVMTYTALVHALCKAGKFDEAQGMLREMVAQG-CAPDT 161

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS-SQPKLANKVFD 381
           V+++ LIDG         A     ++  RG+  +  ++ T+++      +  +LA+KV  
Sbjct: 162 VTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLG 221

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
            ++        ++ +N+++ G+C+   ++ A +++E M E G  PNV T+  L  G+  A
Sbjct: 222 VVIAKGFTPT-VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKA 280

Query: 442 RKPGEA-LLLWKEIKERCE------------VKKEGVNADS----------DLPPPLKPD 478
            + GEA  LL K +   C             + K+G   D+          + PP +   
Sbjct: 281 NRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTH 340

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
             L+D L     +A    +A ++   M E G  P+   Y  + ++   + F    A Q  
Sbjct: 341 NILIDGLC----KAKRIEEARQLYHRMRETGCAPDIITYNSL-IDGLCKSFQVDEAFQLF 395

Query: 539 QDRRRERKRAAEAFKF 554
           Q        AA A  +
Sbjct: 396 QTIPESGVSAANAVTY 411



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 51/273 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P     +AVL         ++ +QLFD M   G   D L YN++++  ARAS+    + V
Sbjct: 476 PRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAV 535

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE++++                         + + V A+ E    +C++           
Sbjct: 536 LEQVIDKRDR-----------------KFNPSSSAVDALVE---SLCQV----------- 564

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  DD  ++  K+        SE     + FA     Y  L+ G     R  +  ++
Sbjct: 565 ---GKTDDAKQLLHKM--------SE-----RGFAAAVSSYNRLLSGLSRLQRWDEATQV 608

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
             AM         P+  T   V+S L  A  +D A +++  M+++G   +  T N L+ G
Sbjct: 609 FEAMVSA---GPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGG 665

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           YC+  + D A++LL EM  +A +EP+  ++++L
Sbjct: 666 YCKSGRADLARKLLEEMT-EAGLEPNDTTHDLL 697



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
           +++  +V S N  +D    ++    AL  F    AR   P K +Y  L++ F+ +    +
Sbjct: 16  SRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDI 75

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A ++ +EM +    + + V    L++G C  G V EA      M ++   P+V TY +L 
Sbjct: 76  AIQLLEEM-KSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPDVMTYTALV 133

Query: 436 NGISLARKPGEALLLWKEI 454
           + +  A K  EA  + +E+
Sbjct: 134 HALCKAGKFDEAQGMLREM 152


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 181/448 (40%), Gaps = 73/448 (16%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           G   K +Q+FD+M +   +   + YN  I +    SR  L      ++   G +L   T+
Sbjct: 23  GLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQMGTRGFSLSSFTY 82

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
              +       +    + ++  M     +    I   ++  +    EG  D   EVFEK+
Sbjct: 83  SRFITGLCKVKNFTFIDELLHDMET--LNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKI 140

Query: 192 LPNSINPSSEP----------------------PLLPKTFAPNSR--------------- 214
           + N   P                           ++ K F+P+++               
Sbjct: 141 VKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKV 200

Query: 215 ---------------------IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
                                +Y  L+ G+   GR+     +   MRR   N   PD VT
Sbjct: 201 DLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRR---NGCEPDLVT 257

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           Y   ++       +D A+++L  M R G+  +  +YN LLKG C+    DKA  L+    
Sbjct: 258 YNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTN-- 315

Query: 314 DDAKIEP----DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
              K+ P    DVVSYN +I  F  I D+  A   F EM  +GI P  +++T  +KAF  
Sbjct: 316 ---KMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLG 372

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                +A K+ D+M  +  +  D + +  +++  C+ G VE A  I   M E G  P+V 
Sbjct: 373 KGSFNIAKKLLDQM-TEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVI 431

Query: 430 TYGSLANGISLARKPGEALLLWKEIKER 457
           ++ +L NG     +  EA+ L++E++ R
Sbjct: 432 SFNALINGFCKCSRVSEAMHLYEEMQNR 459



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 178/441 (40%), Gaps = 97/441 (21%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  A+N  L+     G+    L++F+++ + G KPDV+TY ++I    +  +    +  
Sbjct: 112 PDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQF 171

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYS 174
              ++  G +       ++V        +++A E I+  M+ GR  +             
Sbjct: 172 WRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKL------------- 218

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                                ++ +Y  L+ G+   GR+     
Sbjct: 219 -------------------------------------STLVYNALISGFCRAGRIDKAQA 241

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   MRR   N   PD VTY   ++       +D A+++L  M R G+  +  +YN LLK
Sbjct: 242 IKSFMRR---NGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLK 298

Query: 295 GYCQQLQIDKAKELLREMADDAKIEP----DVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           G C+    DKA  L+       K+ P    DVVSYN +I  F  I D+  A   F EM  
Sbjct: 299 GICKGNCPDKAYLLMTN-----KMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQ 353

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--------------------------- 383
           +GI P  +++T  +KAF       +A K+ D+M                           
Sbjct: 354 KGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEM 413

Query: 384 -------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
                  + +  +  D++++N L+ G+C+   V EA  + E M+  G YP+  TY  +  
Sbjct: 414 AHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIG 473

Query: 437 GISLARKPGEALLLWKEIKER 457
           G+   +K   A ++W ++ ++
Sbjct: 474 GLIEEKKISIACMVWGQMMDK 494



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 184/423 (43%), Gaps = 51/423 (12%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVL 65
           LP + A++  +  L     +G ++ ++++F+ +VK  RK           PD   Y  ++
Sbjct: 111 LPDIWAFNIYLHLLFV---EGRIDLALEVFEKIVKNGRK-----------PDVVTYTIII 156

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLVF-VLERILEMG 123
           +    + K    +Q +  M   G  PD      +++ LC    RK  L + ++  +++ G
Sbjct: 157 HGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLC--DGRKVDLAYELIIDVMKSG 214

Query: 124 -ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK---IIRELDLEDYSSENEG 179
            + L    + +L++ +   G ++ A+ I   M   RR+ C+   +   + L  +  E   
Sbjct: 215 RVKLSTLVYNALISGFCRAGRIDKAQAIKSFM---RRNGCEPDLVTYNVFLNYFCDELML 271

Query: 180 DD-------------DDDDEVFEKLLPNSIN---PSSEPPLLPKTFAPNSRI----YTTL 219
           DD             + D   + +LL        P     L+     P        Y T+
Sbjct: 272 DDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTI 331

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +K +   G  +   ++   M ++      PD VT+T  + A +  GS + A+++L +MT 
Sbjct: 332 IKAFCKIGDTTSAYKLFEEMGQK---GIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTE 388

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
           +G+  + I Y  ++   C+  +++ A  +  +M +   I PDV+S+N LI+GF      +
Sbjct: 389 MGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQG-ISPDVISFNALINGFCKCSRVS 447

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A+  + EM+ RG  P +++Y  ++       +  +A  V+ +M+ D    +D      L
Sbjct: 448 EAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMM-DKGFTLDRAIAQTL 506

Query: 400 VEG 402
           + G
Sbjct: 507 IRG 509



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 112/267 (41%), Gaps = 39/267 (14%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           + ++   +  IY + + GY+  G +   V++   M +        D   Y   +  L+  
Sbjct: 1   MYQSLGAHRLIYRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSID---YNRFIGVLINH 57

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ-------------------------- 298
              D A    ++M   G   +  TY+  + G C+                          
Sbjct: 58  SRFDLANHYYSQMGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAF 117

Query: 299 ---------QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
                    + +ID A E+  ++  + + +PDVV+Y I+I G   I     A+ F+ +M 
Sbjct: 118 NIYLHLLFVEGRIDLALEVFEKIVKNGR-KPDVVTYTIIIHGVCKIKKFDTAIQFWRDMI 176

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            +G +P   +   ++       +  LA ++  ++++  RVK+  + +N L+ G+CR G +
Sbjct: 177 HKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRI 236

Query: 410 EEAKRIIERMKENGFYPNVATYGSLAN 436
           ++A+ I   M+ NG  P++ TY    N
Sbjct: 237 DKAQAIKSFMRRNGCEPDLVTYNVFLN 263



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 17/266 (6%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           + Y + ++  VKAG +D+A QV  EM++       I YN  +       + D A     +
Sbjct: 10  LIYRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQ 69

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M           +Y+  I G   + +        ++M      P   ++   +    +  
Sbjct: 70  MGTRG-FSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEG 128

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +  LA +VF++++++ R K D+V + +++ G C++   + A +    M   GF P+    
Sbjct: 129 RIDLALEVFEKIVKNGR-KPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKAC 187

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
           G++  G+   RK   A  L  ++ +   VK   +               + +AL     R
Sbjct: 188 GAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTL---------------VYNALISGFCR 232

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKY 517
           A    KA  I + M  +G  P+   Y
Sbjct: 233 AGRIDKAQAIKSFMRRNGCEPDLVTY 258



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
           A+R+ Y   + GY +   IDKA ++  EM+  +      + YN  I   +LI+ S   L 
Sbjct: 7   AHRLIYRSRIAGYVKAGLIDKAVQVFDEMS-QSNCRVFSIDYNRFIG--VLINHSRFDLA 63

Query: 344 --FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF-DEMLRDPRVKV---DIVAWN 397
             ++++M  RG + +  +Y+  +         K+ N  F DE+L D        DI A+N
Sbjct: 64  NHYYSQMGTRGFSLSSFTYSRFITGLC-----KVKNFTFIDELLHDMETLNCLPDIWAFN 118

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           + +      G ++ A  + E++ +NG  P+V TY  + +G+   +K   A+  W+++  +
Sbjct: 119 IYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHK 178



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P    ++T++  L  SG      S+   D+V + +             PD  +
Sbjct: 386 MTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSI-FCDMVEQGI------------SPDVIS 432

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA++N      +  + + L+++M   G+ PD +TY ++I       +  +   V  +++
Sbjct: 433 FNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMM 492

Query: 121 EMGITLCMTTFQSLV 135
           + G TL     Q+L+
Sbjct: 493 DKGFTLDRAIAQTLI 507


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 192/430 (44%), Gaps = 32/430 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+A+N +L+A A  G      QLF  M +   +P+V+TY +++K   +A R    + V
Sbjct: 135 PDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSV 194

Query: 116 LERILEMGITLC--MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           L+ +      +C  +    ++V      G L+ A   V+                +   +
Sbjct: 195 LDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAH 254

Query: 174 SSENEGDDDDDDEVF-----EKLLPNSINPSSEPPLL---------------PKTFAPNS 213
           +    G+     E+      E++ PN++  ++    L                +T  P +
Sbjct: 255 AFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEA 314

Query: 214 R----IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           R     Y+TL+  +++   V   + +   M    D  + PD + Y T++S L +AG +D 
Sbjct: 315 RGNAVTYSTLVGAFLHTNNVGVAMELFHEM---VDEGNSPDAIMYFTMISGLTQAGRLDD 371

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A  +   M + G   +   YNIL+ G+C++ ++++A ELL EM  +A ++PDV +YN L+
Sbjct: 372 AWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEM-KEAGLQPDVYTYNTLL 430

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G     D         +M   G  P+ +++ TL+  +    Q   A ++F  M  +  +
Sbjct: 431 SGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSM-DESGI 489

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           + + V +N L++  C+      A  + + M+E     NV T+ +L  G+     P +A  
Sbjct: 490 QPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFE 549

Query: 450 LWKEIKE-RC 458
           L   ++E RC
Sbjct: 550 LMDLMREGRC 559



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 164/395 (41%), Gaps = 79/395 (20%)

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--------PNSRIYTTLMKGYMNEGRVS 230
           G    D   F  LL +++  + + P + + FA        PN   Y  L+KG    GRV 
Sbjct: 131 GAPPPDTSAFNTLL-DALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVG 189

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI--GVPANRIT 288
           D + +L  M   E +   PD V    +V  L K G + +A + + E  R   G   N +T
Sbjct: 190 DALSVLDGMSGPESDVC-PDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVT 248

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN L   +C+   +  A EL+ +M +  ++ P+ V+ N ++ G   +     AL FF E 
Sbjct: 249 YNCLAHAFCRAGNVGMACELVAKM-EKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREK 307

Query: 349 R-----ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-------------------- 383
           R     ARG A   ++Y+TL+ AF  ++   +A ++F EM                    
Sbjct: 308 RTVWPEARGNA---VTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLT 364

Query: 384 --------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                         ++    ++D  A+N+L+ G+CR   + EA  ++  MKE G  P+V 
Sbjct: 365 QAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVY 424

Query: 430 TYGSLANGISLARKPGEAL----LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           TY +L +G+    K G+ L    LL K I   C                 +P       L
Sbjct: 425 TYNTLLSGLC---KAGDFLAVDELLGKMIDGGC-----------------RPSVVTFGTL 464

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                +     +AL I   M+E GI PN   Y  +
Sbjct: 465 IHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTL 499



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 29/291 (9%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +++ +   Y+ ++ A  +       ++LF +M + G  PD + Y  MI    +A R    
Sbjct: 313 EARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDA 372

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +   + + G  L    +  L+  +     L  A  ++  M+E          + D+  
Sbjct: 373 WSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAG-------LQPDVYT 425

Query: 173 YSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y++        GD    DE+  K++     PS                + TL+ GY   G
Sbjct: 426 YNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVV-------------TFGTLIHGYCKVG 472

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           ++ + +R+    R  +++   P+ V Y T++  L K+     A ++  EM    VPAN  
Sbjct: 473 QIDEALRIF---RSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVT 529

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           T+N LLKG   +   +KA EL+ ++  + +  PD V+ +IL++   +I ++
Sbjct: 530 TFNALLKGLRDKNMPEKAFELM-DLMREGRCTPDYVTIDILMEWLPVIGET 579



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 7/190 (3%)

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDK-AKELLREMADDAKIEPDVVSYNILIDGF 332
           L    R+  P+ RI   +L K   +       A   LR+        PD  ++N L+D  
Sbjct: 88  LPSCHRLPPPSPRILSALLYKILSRSPSSSADAARFLRDSLAAGAPPPDTSAFNTLLDAL 147

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV- 391
               D  G    F  MR   + P  ++Y  L+K    + +   A  V D M   P   V 
Sbjct: 148 AQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGM-SGPESDVC 206

Query: 392 -DIVAWNMLVEGYCRMGLVEEAKRII-ERMKE-NGFYPNVATYGSLANGISLARKPGEAL 448
            D+V  N +V+G C+ G +++A + + ERM+  +G  PN  TY  LA+    A   G A 
Sbjct: 207 PDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMAC 266

Query: 449 -LLWKEIKER 457
            L+ K  KER
Sbjct: 267 ELVAKMEKER 276



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 18/186 (9%)

Query: 338 SAGALTFFNEMRARGIAPTKIS-YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           SA A  F  +  A G  P   S + TL+ A A +       ++F  M RD  V+ ++V +
Sbjct: 117 SADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASM-RDASVRPNVVTY 175

Query: 397 NMLVEGYCRMGLVEEAKRIIERMK--ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +LV+G C+ G V +A  +++ M   E+   P+V    ++ +G+    K G      K +
Sbjct: 176 GILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLC---KTGRLQQAVKFV 232

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           +ER       V+          P+    + LA    RA     A E+VA ME+  + PN 
Sbjct: 233 EER----MRSVHG-------CAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNA 281

Query: 515 TKYKKI 520
                I
Sbjct: 282 VTLNTI 287



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P V  ++T++S L  +GD         F  V + + K  D       +P    
Sbjct: 414 MKEAGLQPDVYTYNTLLSGLCKAGD---------FLAVDELLGKMID----GGCRPSVVT 460

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  +++    +G+  + L++F  M E G +P+ + YN +I    ++    L + + + + 
Sbjct: 461 FGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMR 520

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           E  +   +TTF +L+         E A  ++  MREGR
Sbjct: 521 EKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGR 558



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 22/220 (10%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  AYN ++       +  +  +L  +M E G +PDV TYN ++    +A     +  +L
Sbjct: 387 DAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELL 446

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE--LDLEDYS 174
            ++++ G    + TF +L+  Y   G ++ A  I ++M E       +I    +D    S
Sbjct: 447 GKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKS 506

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +     +  DE+ EK +P ++                   +  L+KG  ++        
Sbjct: 507 RDTSLAIELFDEMREKHVPANVT-----------------TFNALLKGLRDKNMPEKAFE 549

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           ++  MR   +    PD+VT   ++  L   G  DR +  +
Sbjct: 550 LMDLMR---EGRCTPDYVTIDILMEWLPVIGETDRLKHFM 586


>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1604

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 150/320 (46%), Gaps = 43/320 (13%)

Query: 120  LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSSEN 177
            L+   TLC++ F+ + +  V   D++    +++ +R+  R  D+C               
Sbjct: 1061 LDTCSTLCLSAFREMASHGVA-PDVKDCNRVLRVLRDAARWDDICA-------------- 1105

Query: 178  EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                     V E++L   I PS                Y TL+  ++ EGR  D V ML 
Sbjct: 1106 ---------VHEEMLELGIEPSIV-------------TYNTLLDSFLKEGR-KDKVAMLL 1142

Query: 238  AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
                   +   P+ VTY  V++ L + G ++ A + L E  R+   A+  TYN L+ G  
Sbjct: 1143 KEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAE-LVEGMRLSKKASSFTYNPLITGLL 1201

Query: 298  QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
             +  + K  +L  EM ++  I P VV+YN +I G +       A   F EMRA G+ P  
Sbjct: 1202 ARGCVKKVYDLQLEMENEG-IMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDV 1260

Query: 358  ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
            I+Y +L+  +  +   K A  +F + LR   +   ++ +N+L++GYCR+G +EEA+ + E
Sbjct: 1261 ITYNSLLNGYCKAGNLKEALLLFGD-LRRAGLAPTVLTYNILIDGYCRLGDLEEARILKE 1319

Query: 418  RMKENGFYPNVATYGSLANG 437
             M E G  PNV TY  L  G
Sbjct: 1320 EMGEQGCLPNVCTYTILMKG 1339



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 179/399 (44%), Gaps = 59/399 (14%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD    N VL    +  +      + ++M E G +P ++TYN ++    +  RK  +  +
Sbjct: 1082 PDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAML 1141

Query: 116  LERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------- 158
            L+ +   G + C+    T+  ++      GDLE A  +V+ MR  +              
Sbjct: 1142 LKEMETRG-SGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGL 1200

Query: 159  --RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
              R   K + +L LE    ENEG                        ++P     N+ I+
Sbjct: 1201 LARGCVKKVYDLQLE---MENEG------------------------IMPTVVTYNAMIH 1233

Query: 217  TTLMKGYMNEGRVS-DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
              L  G +   +V    +R +G +         PD +TY ++++   KAG++  A  +  
Sbjct: 1234 GLLQSGLVEAAQVKFAEMRAMGLL---------PDVITYNSLLNGYCKAGNLKEALLLFG 1284

Query: 276  EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            ++ R G+    +TYNIL+ GYC+   +++A+ L  EM +   + P+V +Y IL+ G + +
Sbjct: 1285 DLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCL-PNVCTYTILMKGSLNV 1343

Query: 336  DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
               A A  FF+EM ++G+ P   +Y T + A  +      A ++  E+L    +  D V 
Sbjct: 1344 RSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFEL-REVLMLEGISSDTVT 1402

Query: 396  WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            +N+L+ G C+ G +++AK +  +M     + + A +  L
Sbjct: 1403 YNILIHGLCKTGNLKDAKELQMKMVRGDRWSSWALHFKL 1441



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 236  LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            L A R    +   PD      V+  L  A   D    V  EM  +G+  + +TYN LL  
Sbjct: 1069 LSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDS 1128

Query: 296  YCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            + ++ + DK   LL+EM    +   P+ V+YN++I G     D   A      MR    A
Sbjct: 1129 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA 1188

Query: 355  PTKISYTTLMKAFALSSQPKLANKVFDEMLR--DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             +  +Y  L+         K   KV+D  L   +  +   +V +N ++ G  + GLVE A
Sbjct: 1189 -SSFTYNPLITGLLARGCVK---KVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAA 1244

Query: 413  KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            +     M+  G  P+V TY SL NG   A    EALLL+ +++
Sbjct: 1245 QVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLR 1287



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 129/313 (41%), Gaps = 40/313 (12%)

Query: 4    SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
            SG LP+   ++ V++ L   GD    E+ +L + +  R+ K          K  +  YN 
Sbjct: 1150 SGCLPNDVTYNVVITGLTRKGD--LEEAAELVEGM--RLSK----------KASSFTYNP 1195

Query: 64   VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
            ++      G  KK   L  +M   G  P V+TYN MI    ++            +  MG
Sbjct: 1196 LITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMG 1255

Query: 124  ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
            +   + T+ SL+  Y   G+L+ A  +   +R        +   + ++ Y     GD ++
Sbjct: 1256 LLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYC--RLGDLEE 1313

Query: 184  DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
               + E++         E   L     PN   YT LMKG +N       VR L   R   
Sbjct: 1314 ARILKEEM--------GEQGCL-----PNVCTYTILMKGSLN-------VRSLAMAREFF 1353

Query: 244  D----NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            D        PD   Y T + A +  G + RA ++   +   G+ ++ +TYNIL+ G C+ 
Sbjct: 1354 DEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKT 1413

Query: 300  LQIDKAKELLREM 312
              +  AKEL  +M
Sbjct: 1414 GNLKDAKELQMKM 1426


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 171/403 (42%), Gaps = 29/403 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +  +Y  +++     G+  + L+LF  M E    P V TY V+I   + + RK   + + 
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF 322

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             + E G    + T+  L+        ++ A  ++  M E       +     ++ Y   
Sbjct: 323 NEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC-- 380

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSR 214
            EG  DD  E+ + +  NS  P++                         +L +  +P+  
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLI 440

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y +L+ G      +    R+L  M    +N   PD  TY+  +  L K G ++ A  + 
Sbjct: 441 TYNSLIHGQCKVNDLESAYRLLSLMN---ENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             +   GV AN + Y  L+ GYC+  +ID A  LL  M +DA + P+  +YN+LI+G   
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL-PNSYTYNVLIEGLCK 556

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 A +   +M   G+ PT ++YT L+           A KVF+ M+     + D+ 
Sbjct: 557 EKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMV-SLGYQPDVC 615

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +   +  Y   G++EE   +I +M E G  P++ TY  L +G
Sbjct: 616 TYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDG 658



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 125/581 (21%), Positives = 214/581 (36%), Gaps = 170/581 (29%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y  ++ A +  G+  + L LF++M E G +P+V TY V+I    + ++      +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKM 356

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  + E G+   + T+ +L+  Y                       CK            
Sbjct: 357 LSEMSEKGLIPSVVTYNALIDGY-----------------------CK------------ 381

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNS 213
             EG  DD  E+ + +  NS  P++                         +L +  +P+ 
Sbjct: 382 --EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSL 439

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y +L+ G      +    R+L  M    +N   PD  TY+  +  L K G ++ A  +
Sbjct: 440 ITYNSLIHGQCKVNDLESAYRLLSLMN---ENGLVPDQWTYSVFIDTLCKEGRVEEAGTL 496

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
              +   GV AN + Y  L+ GYC+  +ID A  LL  M +DA + P+  +YN+LI+G  
Sbjct: 497 FDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL-PNSYTYNVLIEGLC 555

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM---------- 383
                  A +   +M   G+ PT ++YT L+           A KVF+ M          
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVC 615

Query: 384 ------------------------LRDPRVKVDIVAWNMLVEGYCRMGLV---------- 409
                                   + +  +  D+V + +L++GY R+GL           
Sbjct: 616 TYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCM 675

Query: 410 -------------------------------------------EEAKRIIERMKENGFYP 426
                                                      E A ++ E+M E+G   
Sbjct: 676 VDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTI 735

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALA 486
           +V+ YG+L  G     +  EA  L   +KER                 + P E++ ++L 
Sbjct: 736 DVSIYGALIAGFCQQERLEEAQGLVHHMKER----------------GMSPSEDIYNSLL 779

Query: 487 DICVRAAFFRKALEIVACMEEHGIPPNKTKYK----KIYVE 523
           D C +   + +A+ +V  M E+G+ P    YK     +Y+E
Sbjct: 780 DCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIE 820



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 121/548 (22%), Positives = 223/548 (40%), Gaps = 51/548 (9%)

Query: 16  VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD---------IVSDSKPDTAAYNAVLN 66
           V  ++ A G+     +++ ++ ++  + KF   D         + +   P+   +NA++N
Sbjct: 143 VFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVN 202

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
               +G   +      ++ + G  PD  TY  +I    R         V   + + G   
Sbjct: 203 GYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQR 262

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
              ++ +L+      G +  A  +   M E   + C  +R   +  Y+    G   +   
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMTED--NCCPTVRTYTVLIYALSGSGRKVEALN 320

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           +F +             +  K   PN   YT L+ G   E ++ +  +ML  M  +    
Sbjct: 321 LFNE-------------MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK---G 364

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P  VTY  ++    K G +D A ++L  M       N  TYN L+ G C++ ++ KA 
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            LL +M  + K+ P +++YN LI G   ++D   A    + M   G+ P + +Y+  +  
Sbjct: 425 ALLNKML-ERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
                + + A  +FD  ++   VK + V +  L++GYC++G ++ A  ++ERM  +   P
Sbjct: 484 LCKEGRVEEAGTLFDS-VKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLP 542

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN---------ADSDLPPPLKP 477
           N  TY  L  G+   +K  EA  L  ++     VK   V           D      LK 
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTM-GVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 478 DEEL--LDALADICVRAAFFRKAL---------EIVACMEEHGIPPNKTKYKKIYVEMHS 526
              +  L    D+C   AF              +++A M E GI P+   Y  + ++ ++
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTY-TVLIDGYA 660

Query: 527 RMFTSKHA 534
           R+  +  A
Sbjct: 661 RLGLTHRA 668



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 182/459 (39%), Gaps = 57/459 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G +P    +S  +  L   G     E+  LFD V  +             K +   
Sbjct: 465 MNENGLVPDQWTYSVFIDTLCKEGR--VEEAGTLFDSVKAK-----------GVKANEVI 511

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y A+++    +GK      L ++M      P+  TYNV+I+ LC     K     V  ++
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV-AKM 570

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE--GRRDVCKIIRELDLEDYSSEN 177
           L MG+   + T+  L+   +  G  + A  +   M     + DVC     L    ++  +
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL----HAYFS 626

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +G  ++ D+V  K+        +E  +LP         YT L+ GY    R+  T R   
Sbjct: 627 QGMLEEVDDVIAKM--------NEEGILPDLVT-----YTVLIDGY---ARLGLTHRAFD 670

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR------------------QVLAEMTR 279
            ++   D    P     + ++  L     M   R                  ++  +M  
Sbjct: 671 FLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVE 730

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G   +   Y  L+ G+CQQ ++++A+ L+  M +   + P    YN L+D    +   A
Sbjct: 731 HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERG-MSPSEDIYNSLLDCCCKLGVYA 789

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A+   + M   G+ P   SY  L+    +    + A  VF  +L       D VAW +L
Sbjct: 790 EAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL-SCGYNYDEVAWKVL 848

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           ++G  +  LV+E   +I+ M+E G  PN  TY  L  G+
Sbjct: 849 IDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 29/324 (8%)

Query: 229 VSDTVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
           + D + +L   R+   +      P    Y T++ +L K   +D  + V  E+    +  N
Sbjct: 134 IEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPN 193

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
             T+N ++ GYC+   + +A EL       A + PD  +Y  LI G         A   F
Sbjct: 194 IYTFNAMVNGYCKIGNVVEA-ELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVF 252

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEG 402
             M  +G    ++SYT L+     + +   A K+F +M  D   P V+     + +L+  
Sbjct: 253 LIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVR----TYTVLIYA 308

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
               G   EA  +   MKE G  PNV TY  L +G+    K  EA  +  E+ E+     
Sbjct: 309 LSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK----- 363

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
                       L P     +AL D   +      A EI+  ME +   PN   Y ++  
Sbjct: 364 -----------GLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELIC 412

Query: 523 EMHSRMFTSKHASQARQDRRRERK 546
            +  +     H + A  ++  ERK
Sbjct: 413 GLCKK--RKVHKAMALLNKMLERK 434


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 203/461 (44%), Gaps = 48/461 (10%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR--KHLLVFVLE 117
            YNA++ ACA     +K L L  +M + G + D + Y+++I+   R+++    +L+ + +
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYK 258

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-----QAMREGRRDVCKIIRELDLED 172
            I    + L +     ++  +   GD   A  ++       +      +  II  L    
Sbjct: 259 EIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISAL---- 314

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               + G   + + +FE+L  + I P              +R Y  L+KGY+  G + D 
Sbjct: 315 ---ADSGRTLEAEALFEELRQSGIKP-------------RTRAYNALLKGYVKTGPLKDA 358

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             M+  M   E     PD  TY+ ++ A V AG  + AR VL EM    V  N   ++ L
Sbjct: 359 ESMVSEM---EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRL 415

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L G+  + +  K  ++L+EM     ++PD   YN++ID F   +    A+T F+ M + G
Sbjct: 416 LAGFRDRGEWQKTFQVLKEM-KSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 474

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P ++++ TL+       +  +A ++F+ M R   +      +N+++  Y      ++ 
Sbjct: 475 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPC-ATTYNIMINSYGDQERWDDM 533

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           KR++ +MK  G  PNV T+ +L +    + +  +A+   +E+K                 
Sbjct: 534 KRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKS---------------- 577

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
             LKP   + +AL +   +     +A+     M   G+ P+
Sbjct: 578 VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPS 618



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 204/514 (39%), Gaps = 47/514 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + GY      +S V+  L  S         K+  V++ R+ K  + D +   + D   
Sbjct: 223 MRQDGYQSDFVNYSLVIQSLTRSN--------KIDSVMLLRLYKEIERDKL---ELDVQL 271

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++   A  G P K LQL       G      T   +I   A + R      + E + 
Sbjct: 272 VNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELR 331

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI      + +L+  YV  G L+ AE++V  M   +R V        L   +  N G 
Sbjct: 332 QSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEME--KRGVSPDEHTYSLLIDAYVNAGR 389

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +    V +++    +              PNS +++ L+ G+ + G    T ++L  M+
Sbjct: 390 WESARIVLKEMEAGDVQ-------------PNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD   Y  V+    K   +D A      M   G+  +R+T+N L+  +C+  
Sbjct: 437 ---SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHG 493

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +   A+E+   M     + P   +YNI+I+ +   +          +M+++GI P  +++
Sbjct: 494 RHIVAEEMFEAMERRGCL-PCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTH 552

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTL+  +  S +   A +  +EM +   +K     +N L+  Y + GL E+A      M 
Sbjct: 553 TTLVDVYGKSGRFNDAIECLEEM-KSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT 611

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
            +G  P++    SL N     R+  EA  + + +KE       GV          KPD  
Sbjct: 612 SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKE------NGV----------KPDVV 655

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
               L    +R   F+K   +   M   G  P++
Sbjct: 656 TYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDR 689



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 19/320 (5%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D +P++  ++ +L    + G+ +K  Q+  +M   G KPD   YNV+I    + +     
Sbjct: 404 DVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHA 463

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           +   +R+L  GI     T+ +L+  +   G   +AE + +AM       C     + +  
Sbjct: 464 MTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINS 523

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           Y  +   DD       ++LL           +  +   PN   +TTL+  Y   GR +D 
Sbjct: 524 YGDQERWDD------MKRLLGK---------MKSQGILPNVVTHTTLVDVYGKSGRFNDA 568

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +  L  M+        P    Y  +++A  + G  ++A      MT  G+  + +  N L
Sbjct: 569 IECLEEMK---SVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSL 625

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  + +  +  +A  +L+ M ++  ++PDVV+Y  L+   I +D        + EM   G
Sbjct: 626 INAFGEDRRDAEAFAVLQYMKENG-VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSG 684

Query: 353 IAPTKISYTTLMKAFALSSQ 372
             P + + + L  A     Q
Sbjct: 685 CKPDRKARSMLRSALRYMKQ 704



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 114/278 (41%), Gaps = 55/278 (19%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK--ELL 309
           +TY  ++ A  +   +++A  ++A+M + G  ++ + Y+++++   +  +ID      L 
Sbjct: 198 LTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLY 257

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           +E+  D K+E DV   N +I GF    D + AL      +A G++    +  +++ A A 
Sbjct: 258 KEIERD-KLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALAD 316

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           S +   A  +F+E LR   +K    A+N L++GY + G +++A+ ++  M++ G      
Sbjct: 317 SGRTLEAEALFEE-LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG------ 369

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
                                                        + PDE     L D  
Sbjct: 370 ---------------------------------------------VSPDEHTYSLLIDAY 384

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           V A  +  A  ++  ME   + PN   + ++      R
Sbjct: 385 VNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDR 422


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 137/594 (23%), Positives = 240/594 (40%), Gaps = 92/594 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G LP       +V  L  S         K FD V+   ++          +PD   
Sbjct: 22  MRQEGRLPSFGYVRMIVESLVES---------KKFDNVLDLFKEMVGLGF----RPDKLV 68

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y   + A   LG  K  ++LF+ M      P+V  YNV+I    +  R      +   + 
Sbjct: 69  YGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMS 128

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD------------VCKIIREL 168
              +     TF +L+  Y   G++++A  + + M++ + +            +CK  R  
Sbjct: 129 VRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIE 188

Query: 169 DLEDYSSENEGDDDDDDE-----VFEKLLPNSINPSSEPPLLPKTFAPNSRI--YTT--L 219
           +     +E + +    D      +F+ LL +     +   L  +      +I  YT   L
Sbjct: 189 EARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSIL 248

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G   EG+V     +L ++    ++   P  V Y T+V+   + G MDRA   + +M  
Sbjct: 249 LNGLCKEGKVEKAEEVLKSLV---EHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMES 305

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG-------- 331
            G+  N I +N ++  +C+   IDKA+E +++M     I P V +YNILIDG        
Sbjct: 306 RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKG-IAPSVETYNILIDGYGRLCVFS 364

Query: 332 --FILIDD-----------SAGALT--------------FFNEMRARGIAPTKISYTTLM 364
             F ++++           S G+L                  +M  RG+ P    Y  L+
Sbjct: 365 RCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLI 424

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
                  + + A + FDEM ++  +   IV +N L++G C+MG ++EA+ +   +   G 
Sbjct: 425 DGSCTVGKLREALRFFDEMSKNG-IGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGH 483

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEVKKEGVNA---- 467
            P+V TY SL +G S A    + L L++ +K+                  KEG+      
Sbjct: 484 CPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETL 543

Query: 468 -DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            +  L   L PD  + +A+          +KA  +   M + G+ P+   Y  +
Sbjct: 544 FNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSL 597



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 101/476 (21%), Positives = 174/476 (36%), Gaps = 135/476 (28%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L L+ +    G K D  T ++++    +  +      VL+ ++E G+      + ++V  
Sbjct: 227 LDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNG 286

Query: 138 YVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI 196
           Y   GD++ A  TI Q    G R  C                      + V +K     +
Sbjct: 287 YCQIGDMDRAILTIEQMESRGLRPNCIAF-------------------NSVIDKFCEMQM 327

Query: 197 NPSSE---PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
              +E     ++ K  AP+   Y  L+ GY   GR+    R    +   E+N   P+ ++
Sbjct: 328 IDKAEEWVKKMVGKGIAPSVETYNILIDGY---GRLCVFSRCFQILEEMEENGEKPNVIS 384

Query: 254 YTTVVSALVKAGSMDRARQVLA-----------------------------------EMT 278
           Y ++++ L K G +  A  VL                                    EM+
Sbjct: 385 YGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMS 444

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           + G+ A  +TYN L+KG C+  ++ +A+E+   +       PDV++YN LI G+    +S
Sbjct: 445 KNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHC-PDVITYNSLISGYSNAGNS 503

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR------------- 385
              L  +  M+  G+ PT  ++  L+   +     KL   +F+EML+             
Sbjct: 504 QKCLELYETMKKLGLKPTINTFHPLISGCS-KEGIKLKETLFNEMLQMNLSPDRVVYNAM 562

Query: 386 ---------------------DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK---- 420
                                D  V+ D   +N L+ G+ + G + E K +++ MK    
Sbjct: 563 IHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGL 622

Query: 421 -------------------------------ENGFYPNVATYGSLANGISLARKPG 445
                                          ENGF PNV     L+ G+   RK G
Sbjct: 623 IPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGL---RKDG 675



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 150/355 (42%), Gaps = 37/355 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V ++ ++++ L   G     E V L D+V + V             P+   
Sbjct: 373 MEENGEKPNVISYGSLINCLCKDGKILEAEMV-LRDMVGRGVL------------PNANI 419

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL-VFVLER 118
           YN +++    +GK ++ L+ FD+M + G    ++TYN +IK LC     K    +F L  
Sbjct: 420 YNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFL-- 477

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           I   G    + T+ SL++ Y   G+ +    + + M+       K+  +  +  +     
Sbjct: 478 ITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMK-------KLGLKPTINTFHPLIS 530

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   +  ++ E L            +L    +P+  +Y  ++  Y   G V     +   
Sbjct: 531 GCSKEGIKLKETLFN---------EMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSL--- 578

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            +   D    PD+ TY +++   +K G +   + ++ +M   G+     TY++L++G+C 
Sbjct: 579 QKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCD 638

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
               + A    REM ++  + P+V   N L  G         A +  +EM A G+
Sbjct: 639 LKDFNGAYVWYREMLENGFL-PNVCICNELSTGLRKDGRLQEAQSICSEMIANGM 692


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 188/435 (43%), Gaps = 38/435 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           + +P   +YNA++N     G   +  +++ +M   G  PDV T+ + IK   R  R    
Sbjct: 106 NCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAA 165

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFG-DLEIAETIVQAMREGRRDVCKIIRELDLE 171
           + +L  +   G  L    + ++++ +      +E  E   + +R G   +   I   +  
Sbjct: 166 LRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLG---IFPHIATFNKL 222

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPS-----------------------------SEP 202
            +    +G   + +++  K+L N + P+                                
Sbjct: 223 MHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLH 282

Query: 203 PLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
            ++ K   P+   Y T++ GY   G++ D  R+L   +  +     PD  TY +++  + 
Sbjct: 283 KMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRIL---KDAKFKGFVPDEFTYCSLIIGVC 339

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           + G +D A  +  E    G+  + + YN L+KG  QQ  + KA +L+ +M+ +  + PD+
Sbjct: 340 QDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEG-MSPDI 398

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
            +YN++I+G   +   + A    N   A+G  P   ++ TL+  +    +   A  + D 
Sbjct: 399 WTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDS 458

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M     V  D++ +N ++ G C+    E+     + + E G  PN+ TY  L   +  AR
Sbjct: 459 MWSHG-VTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKAR 517

Query: 443 KPGEALLLWKEIKER 457
           K  EAL L +EI+ R
Sbjct: 518 KVTEALDLLEEIRNR 532



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/480 (22%), Positives = 202/480 (42%), Gaps = 54/480 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVV-----KRV 42
           MLR G  PH+  ++ ++  L   G              +G   ++  F++ +     K V
Sbjct: 207 MLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGV 266

Query: 43  RKFSDPDIVSDS-----------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91
            + ++  +V              +PD   YN ++   + +GK +   ++       G  P
Sbjct: 267 LEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVP 326

Query: 92  DVLTY-NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           D  TY +++I +C      H L  + E  L  G+   +  + +L+    G     +    
Sbjct: 327 DEFTYCSLIIGVCQDGDIDHALA-LFEEALGKGLKPSIVLYNTLIK---GLSQQGLVLKA 382

Query: 151 VQAMRE-GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
           +Q M +  +  +   I   +L        G   D +        N +N +     LP  F
Sbjct: 383 LQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDAN--------NLLNAAIAKGYLPDIF 434

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
                 + TL+ GY    ++ + + +L +M     +   PD +TY ++++ L KA   + 
Sbjct: 435 T-----FNTLIDGYCKRLKMDNAIGILDSMW---SHGVTPDVITYNSILNGLCKAAKPED 486

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             +    +   G   N ITYNIL++  C+  ++ +A +LL E+ +   I PD VS+  +I
Sbjct: 487 VMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLI-PDPVSFGTVI 545

Query: 330 DGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
            GF    D   A   F  M  +  I  T  +Y  ++ AF+      +A K+F EM  D  
Sbjct: 546 SGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEM-GDKG 604

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              D   + ++++G+C++G V      + +  E GF P++ T+G + N + +  +  EA+
Sbjct: 605 CDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAV 664



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 136/316 (43%), Gaps = 28/316 (8%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N+ +Y T++ G+  E    +   +   M R       P   T+  ++  L K G +    
Sbjct: 180 NAVVYCTVISGFYEENYQVEAYELFNKMLRL---GIFPHIATFNKLMHILCKKGHLQEGE 236

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQ-------LQIDKAKELLREMADDAKIEPDVVS 324
           ++L ++ + GV  N  T+NI ++G C++        ++ +A+  L +M +   +EPD  +
Sbjct: 237 KLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKG-LEPDDFT 295

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           YN +I G+  +     A     + + +G  P + +Y +L+           A  +F+E L
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEAL 355

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               +K  IV +N L++G  + GLV +A +++  M + G  P++ TY  + NG+      
Sbjct: 356 -GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLC----- 409

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
                     K  C V       ++ +     PD    + L D   +      A+ I+  
Sbjct: 410 ----------KMGC-VSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDS 458

Query: 505 MEEHGIPPNKTKYKKI 520
           M  HG+ P+   Y  I
Sbjct: 459 MWSHGVTPDVITYNSI 474



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 120/281 (42%), Gaps = 30/281 (10%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           +  GYLP +  ++T++        DG  + +K+ + +        D        PD   Y
Sbjct: 425 IAKGYLPDIFTFNTLI--------DGYCKRLKMDNAI-----GILDSMWSHGVTPDVITY 471

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N++LN      KP+  ++ F  + E G  P+++TYN++I+   +A +    + +LE I  
Sbjct: 472 NSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRN 531

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+     +F ++++ +   GDL+ A  + + M +  R +C  +   ++   +   + D 
Sbjct: 532 RGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYR-ICHTVATYNIMINAFSEKLDM 590

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           D   ++F ++     +             P+S  Y  ++ G+   G V+     L    +
Sbjct: 591 DMAQKLFHEMGDKGCD-------------PDSYTYRVMIDGFCKVGNVNSGYDFL---LK 634

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           + +    P   T+  V++ L     +  A  ++  M R GV
Sbjct: 635 EIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGV 675


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 178/398 (44%), Gaps = 57/398 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PD   YN ++      G+    L + D+M      PDV+TY ++++  C R+  K  + 
Sbjct: 29  EPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK 88

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
             L+ + + G T  + T+  +V                         +C+          
Sbjct: 89  L-LDEMRDKGCTPDIVTYNVVV-----------------------NGICQ---------- 114

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               EG  DD  E F K LP+                PN+  Y  ++KG     R  D  
Sbjct: 115 ----EGRVDDAIE-FLKNLPS------------YGCEPNTVSYNIVLKGLCTAERWEDAE 157

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ++G M ++      P+ VT+  ++S L + G ++ A +VL ++ + G   N ++YN LL
Sbjct: 158 ELMGEMGQK---GCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 214

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
             +C+Q ++DKA   L  M       PD+VSYN L+       +   A+   ++++ +G 
Sbjct: 215 HAFCKQKKMDKAMAFLDLMVSRG-CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 273

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           AP  ISY T++     + + K A ++ +EM+    ++ DI+ ++ +  G CR   +E+A 
Sbjct: 274 APVLISYNTVIDGLTKAGKTKEALELLNEMVSK-GLQPDIITYSTIAAGLCREDRIEDAI 332

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           R   ++++ G  PN   Y ++  G+   R+   A+ L+
Sbjct: 333 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLF 370



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 182/433 (42%), Gaps = 57/433 (13%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           + ++VA Y G G L+ A          RR V ++  E D   Y++   G           
Sbjct: 3   YNAMVAGYCGAGQLDAA----------RRLVAEMPVEPDAYTYNTLIRG------LCGRG 46

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
              N++    E  +L +   P+   YT L++           +++L  MR   D    PD
Sbjct: 47  RTANALAVLDE--MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR---DKGCTPD 101

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
            VTY  VV+ + + G +D A + L  +   G   N ++YNI+LKG C   + + A+EL+ 
Sbjct: 102 IVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMG 161

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           EM       P+VV++N+LI           AL    ++   G  P  +SY  L+ AF   
Sbjct: 162 EMGQKG-CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQ 220

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
            +   A    D M+       DIV++N L+   CR G V+ A  ++ ++K+ G  P + +
Sbjct: 221 KKMDKAMAFLDLMVSR-GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLIS 279

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           Y ++ +G++ A K  EAL L  E+  +                 L+PD      +A    
Sbjct: 280 YNTVIDGLTKAGKTKEALELLNEMVSK----------------GLQPDIITYSTIAAGLC 323

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAE 550
           R      A+     +++ GI PN   Y  I + +                +RRE   A +
Sbjct: 324 REDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLC---------------KRRETHSAID 368

Query: 551 AFKFWLG---LPN 560
            F + +G   +PN
Sbjct: 369 LFAYMIGNGCMPN 381



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 23/235 (9%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           + YN ++ GYC   Q+D A+ L+ EM     +EPD  +YN LI G      +A AL   +
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEM----PVEPDAYTYNTLIRGLCGRGRTANALAVLD 56

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           EM  R   P  ++YT L++A    S  K A K+ DEM RD     DIV +N++V G C+ 
Sbjct: 57  EMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM-RDKGCTPDIVTYNVVVNGICQE 115

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC-EVKKEGV 465
           G V++A   ++ +   G  PN  +Y  +  G+  A +       W++ +E   E+ ++G 
Sbjct: 116 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER-------WEDAEELMGEMGQKGC 168

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                      P+    + L     R      ALE++  + ++G  PN   Y  +
Sbjct: 169 ----------PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPL 213



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 163/386 (42%), Gaps = 38/386 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR   +P V  ++ ++   A     G  +++KL D   +   K   PDIV+        
Sbjct: 58  MLRRRCVPDVVTYTILLE--ATCKRSGYKQAMKLLD---EMRDKGCTPDIVT-------- 104

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N     G+    ++    +  +G +P+ ++YN+++K    A R        E + 
Sbjct: 105 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE---DAEELMG 161

Query: 121 EMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           EMG   C   + TF  L++     G +E A  +++ + +       +     L  +  + 
Sbjct: 162 EMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQK 221

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +    D    F  L            ++ +   P+   Y TL+      G V   V +L 
Sbjct: 222 K---MDKAMAFLDL------------MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLH 266

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            ++   D    P  ++Y TV+  L KAG    A ++L EM   G+  + ITY+ +  G C
Sbjct: 267 QLK---DKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLC 323

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           ++ +I+ A     ++  D  I P+ V YN +I G     ++  A+  F  M   G  P +
Sbjct: 324 REDRIEDAIRAFGKV-QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNE 382

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEM 383
            +YT L++  A     K A  + DE+
Sbjct: 383 STYTILIEGLAYEGLIKEARDLLDEL 408



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 132/352 (37%), Gaps = 75/352 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V  ++ ++S L   G   P   V      ++++ K+          P++ +
Sbjct: 163 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEV------LEQIPKYG-------CTPNSLS 209

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+A     K  K +   D M   G  PD+++YN ++    R+    + V +L ++ 
Sbjct: 210 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 269

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + ++ +++      G  + A  ++  M                          
Sbjct: 270 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNEM-------------------------- 303

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   + K   P+   Y+T+  G   E R+ D +R  G   
Sbjct: 304 ------------------------VSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG--- 336

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           + +D    P+ V Y  ++  L K      A  + A M   G   N  TY IL++G   + 
Sbjct: 337 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 396

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
            I +A++LL E+   A  E       IL+D  ++  D A   TF     A G
Sbjct: 397 LIKEARDLLDELCSRAGEE-------ILLDVHLI--DVAFLTTFLPCSNANG 439


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 5/233 (2%)

Query: 228 RVSDTVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           R+  T R+  A+   E+ A+    PD   Y  V+S L +   ++ AR +  +M +  +  
Sbjct: 18  RLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINP 77

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N +TYN L+ G C+  +I+ A EL +EMA    + P  VSYN LIDGF    D   A   
Sbjct: 78  NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV-PTEVSYNTLIDGFCKKKDLVAAKDV 136

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F++M      P  ++YTTL+   + S + + A +V D M++   V  ++  ++ L++G+C
Sbjct: 137 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG-VTPNVATYSCLIDGFC 195

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++  V+EA +++E+M   G  P V TY  L N +  A K  +A  L++ + +R
Sbjct: 196 KVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQR 248



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 2/206 (0%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD +TY  +V  L K   +D A   + EM   G+  +   YN +L G CQ+ ++++A+ L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             +M    +I P+VV+YN LI+G         A   F EM  +G  PT++SY TL+  F 
Sbjct: 67  FEKMVKQ-RINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 125

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                  A  VFD+M+R   V  ++V +  L++G  + G V+ A  +++ M + G  PNV
Sbjct: 126 KKKDLVAAKDVFDKMVRSNCVP-NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNV 184

Query: 429 ATYGSLANGISLARKPGEALLLWKEI 454
           ATY  L +G    R+  EA  L +++
Sbjct: 185 ATYSCLIDGFCKVRRVDEAHKLLEQM 210



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 5/214 (2%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K + P    Y TL+ G+  +  +     +   M R       P+ VTYTT++  L K+G 
Sbjct: 108 KGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN---CVPNVVTYTTLIDGLSKSGK 164

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A +VL  M + GV  N  TY+ L+ G+C+  ++D+A +LL +M     I P VV+YN
Sbjct: 165 VQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG-IAPTVVTYN 223

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           IL++     D    A   F  M  R   PT ++Y TL++A     Q   A++++ EM+  
Sbjct: 224 ILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK 283

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
                D + ++ L  G  R G V EA+ ++E+MK
Sbjct: 284 G-CPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++ IY  ++ G   E +V +   +   M +Q  N   P+ VTY T+++ L KA  ++ A
Sbjct: 42  PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRIN---PNVVTYNTLINGLCKAWRIETA 98

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  EM   G     ++YN L+ G+C++  +  AK++  +M     + P+VV+Y  LID
Sbjct: 99  YELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCV-PNVVTYTTLID 157

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A    + M  +G+ P   +Y+ L+  F    +   A+K+ ++M+    + 
Sbjct: 158 GLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG-IA 216

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             +V +N+L+   CR   +E+A ++   M +   +P V TY +L   +   ++   A  L
Sbjct: 217 PTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRL 276

Query: 451 WKEI 454
           + E+
Sbjct: 277 YAEM 280



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 135/329 (41%), Gaps = 54/329 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   YN VL+      K ++   LF++M +    P+V+TYN +I    +A R      
Sbjct: 41  KPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYE 100

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + + +   G      ++ +L+  +    DL  A+                          
Sbjct: 101 LFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK-------------------------- 134

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                      +VF+K++ ++               PN   YTTL+ G    G+V     
Sbjct: 135 -----------DVFDKMVRSNC-------------VPNVVTYTTLIDGLSKSGKVQAAAE 170

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M ++      P+  TY+ ++    K   +D A ++L +M   G+    +TYNILL 
Sbjct: 171 VLDGMVKK---GVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLN 227

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C+  +++ A +L R MA   +  P VV+YN L+          GA   + EM A+G  
Sbjct: 228 SLCRADKLEDAFKLFRGMAQR-RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCP 286

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM 383
           P  I+Y TL      + +   A ++ ++M
Sbjct: 287 PDAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 28/191 (14%)

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           AR   P  ++Y  +++    + +   A    +EM     +K D   +N ++ G C+   V
Sbjct: 2   ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRG-IKPDAFIYNFVLSGLCQEEKV 60

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV--------- 460
           EEA+ + E+M +    PNV TY +L NG+  A +   A  L+KE+  +  V         
Sbjct: 61  EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 120

Query: 461 ------KKEGVNAD--------SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
                 KK+ V A         S+  P +     L+D L+    ++   + A E++  M 
Sbjct: 121 IDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLS----KSGKVQAAAEVLDGMV 176

Query: 507 EHGIPPNKTKY 517
           + G+ PN   Y
Sbjct: 177 KKGVTPNVATY 187



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 103/277 (37%), Gaps = 66/277 (23%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   GY+P   +++T++       D   V +  +FD +V+           S+  P+   
Sbjct: 105 MAGKGYVPTEVSYNTLIDGFCKKKD--LVAAKDVFDKMVR-----------SNCVPNVVT 151

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++  +  GK +   ++ D M + G  P+V TY+ +I    +  R      +LE+++
Sbjct: 152 YTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMV 211

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+  L+ +      LE A  + + M + R   C                  
Sbjct: 212 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRR---CH----------------- 251

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P    Y TL++   +  ++    R+   M 
Sbjct: 252 ------------------------------PTVVTYNTLLRALCHHKQLDGAHRLYAEMI 281

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            +      PD +TY T+   L +AG +  A++++ +M
Sbjct: 282 AK---GCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 150/309 (48%), Gaps = 21/309 (6%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN   Y+ LM G+  +G   +  +M   M+R   +   P+   Y  ++S     G +D
Sbjct: 224 LVPNPHTYSVLMNGFFKQGLQREGFQMYENMKR---SGIVPNAYAYNCLISEYCNGGMVD 280

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A +V AEM   G+    +TYNIL+ G C+  +  +A +L+ ++ +   + P++V+YNIL
Sbjct: 281 KAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV-NKVGLSPNIVTYNIL 339

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+GF  +     A+  FN++++ G++PT ++Y TL+  ++       A  +  EM  +  
Sbjct: 340 INGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM-EERC 398

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +    V + +L++ + R+   E+A  +   M+++G  P+V TY  L +G+ +     EA 
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L+K + E                  L+P+  + + +     +     +AL ++  M   
Sbjct: 459 KLFKSLGEM----------------HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHS 502

Query: 509 GIPPNKTKY 517
           G+ PN   +
Sbjct: 503 GMVPNVASF 511



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 174/433 (40%), Gaps = 90/433 (20%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  ++  ++  C   G   K  +L   + EFG  P+V+ Y  +I  C +     L   + 
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLF 216

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            ++  +G+     T+  L+  +                                      
Sbjct: 217 CKMDRLGLVPNPHTYSVLMNGFF------------------------------------- 239

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +G   +  +++E +  + I              PN+  Y  L+  Y N G V    ++ 
Sbjct: 240 KQGLQREGFQMYENMKRSGI-------------VPNAYAYNCLISEYCNGGMVDKAFKVF 286

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             MR +         +TY  ++  L +      A +++ ++ ++G+  N +TYNIL+ G+
Sbjct: 287 AEMREKGIACGV---MTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGF 343

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C   ++D A  L  ++     + P +V+YN LI G+  +++ AGAL    EM  R IAP+
Sbjct: 344 CDVGKMDTAVRLFNQLKSSG-LSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPS 402

Query: 357 KISYTTLMKAFA-----------------------------------LSSQPKLANKVFD 381
           K++YT L+ AFA                                   +    K A+K+F 
Sbjct: 403 KVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFK 462

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
             L +  ++ + V +N ++ GYC+ G    A R++  M  +G  PNVA++ S    +   
Sbjct: 463 S-LGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRD 521

Query: 442 RKPGEALLLWKEI 454
            K  EA LL  ++
Sbjct: 522 EKWKEAELLLGQM 534



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 35/309 (11%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  ++KG    G      R+L  +   E+    P+ V YTT++    K G++  A+ +  
Sbjct: 161 FGIMIKGCCEAGYFVKGFRLLAML---EEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFC 217

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-- 333
           +M R+G+  N  TY++L+ G+ +Q  + +    + E    + I P+  +YN LI  +   
Sbjct: 218 KMDRLGLVPNPHTYSVLMNGFFKQ-GLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNG 276

Query: 334 -LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA----LSSQPKLANKVFDEMLRDPR 388
            ++D    A   F EMR +GIA   ++Y  L+             KL +KV +++   P 
Sbjct: 277 GMVDK---AFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV-NKVGLSP- 331

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              +IV +N+L+ G+C +G ++ A R+  ++K +G  P + TY +L  G S       AL
Sbjct: 332 ---NIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L KE++ERC                + P +     L D   R  +  KA E+ + ME+ 
Sbjct: 389 DLVKEMEERC----------------IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKS 432

Query: 509 GIPPNKTKY 517
           G+ P+   Y
Sbjct: 433 GLVPDVYTY 441



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 130/287 (45%), Gaps = 19/287 (6%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  ++  ++    +AG   +  ++LA +   G+  N + Y  L+ G C+   +  AK L 
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLF 216

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M D   + P+  +Y++L++GF            +  M+  GI P   +Y  L+  +  
Sbjct: 217 CKM-DRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCN 275

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                 A KVF EM R+  +   ++ +N+L+ G CR     EA +++ ++ + G  PN+ 
Sbjct: 276 GGMVDKAFKVFAEM-REKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIV 334

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY  L NG     K   A+ L+ ++K             S L P L     L+   + + 
Sbjct: 335 TYNILINGFCDVGKMDTAVRLFNQLK------------SSGLSPTLVTYNTLIAGYSKVE 382

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
             A     AL++V  MEE  I P+K  Y  I ++  +R+  ++ A +
Sbjct: 383 NLAG----ALDLVKEMEERCIAPSKVTY-TILIDAFARLNYTEKACE 424



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 139/331 (41%), Gaps = 54/331 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  AYN +++   N G   K  ++F +M E G    V+TYN++I    R  +    V +
Sbjct: 261 PNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKL 320

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           + ++ ++G++  + T+  L+    GF D+                               
Sbjct: 321 VHKVNKVGLSPNIVTYNILIN---GFCDV------------------------------- 346

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D    +F +L  + ++P+                Y TL+ GY    +V +    
Sbjct: 347 ---GKMDTAVRLFNQLKSSGLSPTLVT-------------YNTLIAGY---SKVENLAGA 387

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  ++  E+    P  VTYT ++ A  +    ++A ++ + M + G+  +  TY++L+ G
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHG 447

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C    + +A +L + +  +  ++P+ V YN +I G+     S  AL   NEM   G+ P
Sbjct: 448 LCVHGNMKEASKLFKSLG-EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVP 506

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
              S+ + +       + K A  +  +M+  
Sbjct: 507 NVASFCSTIGLLCRDEKWKEAELLLGQMINS 537



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           Y+ +++ ++    +  ALTF + M   G  P   ++  LM     S+    A  +F+E+ 
Sbjct: 92  YDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNEL- 150

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
              +V +D  ++ ++++G C  G   +  R++  ++E G  PNV  Y +L +G     K 
Sbjct: 151 -KSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCC---KY 206

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
           G  +L        C++ + G          L P+      L +   +    R+  ++   
Sbjct: 207 GNVMLAKNLF---CKMDRLG----------LVPNPHTYSVLMNGFFKQGLQREGFQMYEN 253

Query: 505 MEEHGIPPNKTKYKKIYVE 523
           M+  GI PN   Y  +  E
Sbjct: 254 MKRSGIVPNAYAYNCLISE 272


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/468 (21%), Positives = 188/468 (40%), Gaps = 77/468 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   +  ++N     G+  +   LF  M + G +PD++ Y+ +I    +A    +   +
Sbjct: 284 PNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKL 343

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             + L  G+ L +  F S +  YV  GDL  A  + + M                     
Sbjct: 344 FSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRM--------------------- 382

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                        L +  +PN   YT L+KG   +GR+ +   M
Sbjct: 383 -----------------------------LCQGISPNVVTYTILIKGLCQDGRIYEAFGM 413

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G + ++      P  VTY++++    K G++     +  +M ++G P + + Y +L+ G
Sbjct: 414 YGQILKR---GMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDG 470

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +Q  +  A     +M   + I  +VV +N LIDG+  ++    AL  F  M   GI P
Sbjct: 471 LSKQGLMLHAMRFSVKMLGQS-IRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKP 529

Query: 356 TKISYTTLMK------AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
              ++TT+M+      AF    +P +  ++FD M R+ ++  DI   N+++    +   +
Sbjct: 530 DVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRN-KISADIAVCNVVIHLLFKCHRI 588

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           E+A +    + E    P++ TY ++  G    R+  EA  +++ +K              
Sbjct: 589 EDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLK-------------- 634

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
               P  P+   L  L  +  +      A+ + + M E G  PN   Y
Sbjct: 635 --VTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTY 680



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 183/434 (42%), Gaps = 41/434 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G  P+V  ++ ++  L     DG + E+  ++  ++KR             +P   
Sbjct: 382 MLCQGISPNVVTYTILIKGLC---QDGRIYEAFGMYGQILKR-----------GMEPSIV 427

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER 118
            Y+++++     G  +    L++ M + G  PDV+ Y V++  L  +    H + F + +
Sbjct: 428 TYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSV-K 486

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDLEDY 173
           +L   I L +  F SL+  +      + A  + + M     +        ++R   +ED 
Sbjct: 487 MLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMED- 545

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                         F K +  +I       +     + +  +   ++       R+ D  
Sbjct: 546 -------------AFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDAS 592

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +    +    +    PD VTY T++        +D A ++   +       N +T  IL+
Sbjct: 593 KFFNNLI---EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILI 649

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
              C+   +D A  +   MA+    +P+ V+Y  L+D F    D  G+   F EM+ +GI
Sbjct: 650 HVLCKNNDMDGAIRMFSIMAEKGS-KPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGI 708

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           +P+ +SY+ ++       +   A  +F + + D ++  D+VA+ +L+ GYC++G + EA 
Sbjct: 709 SPSIVSYSIIIDGLCKRGRVDEATNIFHQAI-DAKLLPDVVAYAILIRGYCKVGRLVEAA 767

Query: 414 RIIERMKENGFYPN 427
            + E M  NG  P+
Sbjct: 768 LLYEHMLRNGVKPD 781



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 18/277 (6%)

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           D    P+ VT+ T+++   K G MDRA  +   M + G+  + I Y+ L+ GY +   + 
Sbjct: 279 DCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLG 338

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
              +L  + A    ++ DVV ++  ID ++   D A A   +  M  +GI+P  ++YT L
Sbjct: 339 MGHKLFSQ-ALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTIL 397

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +K      +   A  ++ ++L+   ++  IV ++ L++G+C+ G +     + E M + G
Sbjct: 398 IKGLCQDGRIYEAFGMYGQILKRG-MEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMG 456

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
           + P+V  YG L +G+S      + L+L      R  VK  G          ++ +  + +
Sbjct: 457 YPPDVVIYGVLVDGLS-----KQGLMLH---AMRFSVKMLG--------QSIRLNVVVFN 500

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +L D   R   F +AL++   M  +GI P+   +  +
Sbjct: 501 SLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTV 537



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 42/261 (16%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN   + TL+ G+   G +    R     +  E     PD + Y+T++    KAG +  
Sbjct: 283 APNVVTFCTLINGFCKRGEMD---RAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGM 339

Query: 270 ARQVLAE-----------------------------------MTRIGVPANRITYNILLK 294
             ++ ++                                   M   G+  N +TY IL+K
Sbjct: 340 GHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIK 399

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G CQ  +I +A  +  ++     +EP +V+Y+ LIDGF    +       + +M   G  
Sbjct: 400 GLCQDGRIYEAFGMYGQILKRG-MEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYP 458

Query: 355 PTKISYTTLMKAFALSSQPKLANKV-FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           P  + Y  L+    LS Q  + + + F   +    +++++V +N L++G+CR+   +EA 
Sbjct: 459 PDVVIYGVLVD--GLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEAL 516

Query: 414 RIIERMKENGFYPNVATYGSL 434
           ++   M   G  P+VAT+ ++
Sbjct: 517 KVFRLMGIYGIKPDVATFTTV 537



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 123/279 (44%), Gaps = 30/279 (10%)

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           ++D  R V+    R+G+    ++ N +LKG     QI+ A  LL  +  D    P+VV++
Sbjct: 236 ALDFHRLVMERGFRVGI----VSCNKVLKGLSVD-QIEVASRLL-SLVLDCGPAPNVVTF 289

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             LI+GF    +   A   F  M  RGI P  I+Y+TL+  +  +    + +K+F + L 
Sbjct: 290 CTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALH 349

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              VK+D+V ++  ++ Y + G +  A  + +RM   G  PNV TY  L  G+    +  
Sbjct: 350 KG-VKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIY 408

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
           EA  ++ +I +R             + P +     L+D       +    R    +   M
Sbjct: 409 EAFGMYGQILKR------------GMEPSIVTYSSLIDGFC----KCGNLRSGFALYEDM 452

Query: 506 EEHGIPPNKTKY-------KKIYVEMHSRMFTSKHASQA 537
            + G PP+   Y        K  + +H+  F+ K   Q+
Sbjct: 453 IKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQS 491


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 200/457 (43%), Gaps = 43/457 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V   + ++  +  S +D  V S  L +++ +++             PD A +N +
Sbjct: 153 GFNPSVYTCNAILGSIVKSCEDVSVWSF-LKEMLKRKI------------CPDVATFNIL 199

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N     G  KK   L  +M + G  P ++TYN ++    +  R    + +L+ +   G+
Sbjct: 200 INVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGV 259

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDLEDYSSENEG 179
              + T+  L+              + ++ R  +     RD+ K +   +   Y++   G
Sbjct: 260 NADVCTYNMLI------------HDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNG 307

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             ++   +  + L N         +L    +PN   +  L+ G+++EG   + ++M   M
Sbjct: 308 FSNEGKVLIARQLLN--------EMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMM 359

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
              E        V+Y  ++  L K    D AR     M R GV   RITY  ++ G C+ 
Sbjct: 360 ---EAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +D+A  +L EM+ D  I+PD+V+Y+ LI+GF  +     A      +   G++P  I 
Sbjct: 417 GFLDEAVVMLNEMSKDG-IDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGII 475

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+TL+         K   ++++ M+ +     D   +N+LV   C+ G V EA+  +  M
Sbjct: 476 YSTLIYNCCRMGCLKETIRIYEAMILEGNTP-DHFTFNVLVTSLCKAGKVAEAEEFMRCM 534

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             +G  PN  ++  L NG   + +  +A  ++ E+ +
Sbjct: 535 TSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTK 571



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 98/454 (21%), Positives = 177/454 (38%), Gaps = 60/454 (13%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           L  G+   +K     V R+  +G    +      D  V  + + S   I     PD   Y
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGI----DPDIVTY 441

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           +A++N    +G+ K   ++  +++  G  P+ + Y+ +I  C R       + + E ++ 
Sbjct: 442 SALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMIL 501

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G T    TF  LV +    G +  AE  ++ M                           
Sbjct: 502 EGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS------------------------- 536

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                  + +LPN+++                  +  L+ GY + G   + ++       
Sbjct: 537 -------DGILPNAVS------------------FDCLINGYGSSG---EGLKAFSVFDE 568

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
                 HP   TY +++  L K G +  A + L  +  +    + +  N L+   C+   
Sbjct: 569 MTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGN 628

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISY 360
           +DKA  L  EM   + I PD  +Y  LI G      +  A+ F  E  ARG + P K+ Y
Sbjct: 629 LDKAVSLFGEMVQRS-ILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMY 687

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T  +     + Q K A   F + +    +  D+V  N +++GY RMG +E+   ++  M 
Sbjct: 688 TCFVDGMFKAGQWK-AGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMG 746

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
                PN+ TY  L +G S  +    + +L++ +
Sbjct: 747 NQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSM 780



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/446 (21%), Positives = 181/446 (40%), Gaps = 36/446 (8%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           G  +  L++F  M  +G  P V T N ++    ++     +   L+ +L+  I   + TF
Sbjct: 137 GMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATF 196

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
             L+      G  + +  ++Q M +       +     L  Y  +  G      E+ + +
Sbjct: 197 NILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKK--GRFKAAIELLDHM 254

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
               +N              +   Y  L+       R +    +L  MR++     HP+ 
Sbjct: 255 NLKGVNA-------------DVCTYNMLIHDLCRSNRSAKGYLLLRDMRKR---MIHPNE 298

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VTY T+++     G +  ARQ+L EM   G+  N +T+N L+ G+  +    +A ++   
Sbjct: 299 VTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHM 358

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M     I  + VSY +L+DG     +   A  F+  M+  G+   +I+YT ++     + 
Sbjct: 359 MEAKGLIGTE-VSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG 417

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
               A  + +EM +D  +  DIV ++ L+ G+CR+G ++ AK I+ R+   G  PN   Y
Sbjct: 418 FLDEAVVMLNEMSKDG-IDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIY 476

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            +L           E + +++ +                +     PD    + L     +
Sbjct: 477 STLIYNCCRMGCLKETIRIYEAM----------------ILEGNTPDHFTFNVLVTSLCK 520

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKY 517
           A    +A E + CM   GI PN   +
Sbjct: 521 AGKVAEAEEFMRCMTSDGILPNAVSF 546



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 119/525 (22%), Positives = 203/525 (38%), Gaps = 99/525 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML+    P V  ++ +++ L A G      S K    +++++ K       S   P    
Sbjct: 184 MLKRKICPDVATFNILINVLCAEG------SFKKSSYLMQKMEK-------SGYAPTIVT 230

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN VL+     G+ K  ++L D M+  G   DV TYN++I    R++R      +L  + 
Sbjct: 231 YNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMR 290

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +  I     T+ +L+  +   G + IA  ++  M         +     ++ + SE  G+
Sbjct: 291 KRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISE--GN 348

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  ++F  +         E   L  T       Y  L+ G        D  R  G   
Sbjct: 349 FKEALKMFHMM---------EAKGLIGTEVS----YGVLLDGLCKNAEF-DLAR--GFYM 392

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R + N      +TYT ++  L K G +D A  +L EM++ G+  + +TY+ L+ G+C+  
Sbjct: 393 RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVG 452

Query: 301 QIDKAKEL----------------------------LREMAD--DAKI----EPDVVSYN 326
           ++  AKE+                            L+E     +A I     PD  ++N
Sbjct: 453 RLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFN 512

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--- 383
           +L+         A A  F   M + GI P  +S+  L+  +  S +   A  VFDEM   
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKV 572

Query: 384 -------------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
                                          L++    VD V  N L+   C+ G +++A
Sbjct: 573 GHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKA 632

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             +   M +    P+  TY SL +G+    K   A+L  KE + R
Sbjct: 633 VSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEAR 677



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 200/461 (43%), Gaps = 75/461 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+  +++ ++N   + G+  K   +FD+M + G  P   TY  ++K LC      HL+  
Sbjct: 541 PNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGG---HLIA- 596

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             E+ L+        + Q++ AA     D  +  T++ AM       CK           
Sbjct: 597 -AEKFLK--------SLQNVPAAV----DTVMCNTLITAM-------CK----------- 625

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G+ D    +F +++  SI              P+S  YT+L+ G   +G+    + 
Sbjct: 626 ---SGNLDKAVSLFGEMVQRSI-------------LPDSFTYTSLISGLCRKGKT--VIA 667

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L A   +      P+ V YT  V  + KAG          +M ++G+  + +T N ++ 
Sbjct: 668 ILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMID 727

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GY +  +I+K  +LL EM +  +  P++ +YNIL+ G+      + +   +  M   GI 
Sbjct: 728 GYSRMGKIEKTHDLLFEMGNQNQ-GPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGIL 786

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P K++  +++     S+  ++  K+    +    V+VD   +NML+   C  G +  A  
Sbjct: 787 PDKLTCYSIILGICESNMLEIGLKILKAFICRG-VEVDRHTFNMLISKCCANGEINWAFD 845

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M   G   +  T  ++ + ++   +  E+ ++  E+       K+G++      P 
Sbjct: 846 MVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEM------SKQGIS------PE 893

Query: 475 LKPDEELLDALADIC-VRAAFFRKALEIVACMEEHGI-PPN 513
            +    LL+ L  +  ++ AF  K  E++A    H I PPN
Sbjct: 894 SRKYIGLLNGLCRVGDIKTAFVVKE-EMIA----HKICPPN 929



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 40/263 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
            N  ++  L++ Y+ EG + D++ +   M     N   P   T   ++ ++VK+      
Sbjct: 121 SNPSVFDILIRVYLREGMIQDSLEIFRLMGLYGFN---PSVYTCNAILGSIVKSCEDVSV 177

Query: 271 RQVLAEMTRIGVPANRITYNIL-----------------------------------LKG 295
              L EM +  +  +  T+NIL                                   L  
Sbjct: 178 WSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHW 237

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++ +   A ELL  M +   +  DV +YN+LI      + SA       +MR R I P
Sbjct: 238 YCKKGRFKAAIELLDHM-NLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHP 296

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            +++Y TL+  F+   +  +A ++ +EML    +  + V +N L++G+   G  +EA ++
Sbjct: 297 NEVTYNTLLNGFSNEGKVLIARQLLNEMLTFG-LSPNHVTFNALIDGHISEGNFKEALKM 355

Query: 416 IERMKENGFYPNVATYGSLANGI 438
              M+  G      +YG L +G+
Sbjct: 356 FHMMEAKGLIGTEVSYGVLLDGL 378



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 2/189 (1%)

Query: 250  DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
            D  T   +VS L +      +R VL EM++ G+      Y  LL G C+   I  A  + 
Sbjct: 858  DKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVK 917

Query: 310  REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
             EM    KI P  V+ + ++        +  A      M    + PT  S+TTLM  F  
Sbjct: 918  EEMIAH-KICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCK 976

Query: 370  SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
            +     A ++   ++ +  +K+D+V++N+L+ G C  G +  A  + E MK +GF  NV 
Sbjct: 977  NGNVTEALEL-RVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVT 1035

Query: 430  TYGSLANGI 438
            TY +L  GI
Sbjct: 1036 TYKALVGGI 1044



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 33/319 (10%)

Query: 53   DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT-YNVMIKLCARASRKHL 111
            +  P+   YN +L+  +          L+  M   G  PD LT Y++++ +C  ++   +
Sbjct: 749  NQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGIC-ESNMLEI 807

Query: 112  LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
             + +L+  +  G+ +   TF  L++     G++  A  +V  M                 
Sbjct: 808  GLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMT---------------- 851

Query: 172  DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL---PKTFAPNSRIYTTLMKGYMNEGR 228
              S     D +  D +   L  N     S   L     +  +P SR Y  L+ G    G 
Sbjct: 852  --SLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGD 909

Query: 229  VSDTVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            +        A   +E+  +H   P +V  + +V AL K G  D A  +L  M ++ +   
Sbjct: 910  IKT------AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPT 963

Query: 286  RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
              ++  L+  +C+   + +A E LR +  +  ++ D+VSYN+LI G     D A A   F
Sbjct: 964  IASFTTLMHLFCKNGNVTEALE-LRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELF 1022

Query: 346  NEMRARGIAPTKISYTTLM 364
             EM+  G      +Y  L+
Sbjct: 1023 EEMKRDGFLANVTTYKALV 1041



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 178/467 (38%), Gaps = 41/467 (8%)

Query: 57   DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
            DT   N ++ A    G   K + LF +M +    PD  TY  +I  LC +      ++F 
Sbjct: 612  DTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFA 671

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REG-RRDVCKIIRELDLEDY 173
             E      +      +   V      G  +      Q M + G  RDV  +     ++ Y
Sbjct: 672  KEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDV--VTTNAMIDGY 729

Query: 174  SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
            S   +  +   D +FE    N                PN   Y  L+ GY     VS + 
Sbjct: 730  SRMGK-IEKTHDLLFEMGNQNQ--------------GPNLTTYNILLHGYSKRKHVSTSF 774

Query: 234  RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
             +  +M     +   PD +T  +++  + ++  ++   ++L      GV  +R T+N+L+
Sbjct: 775  MLYRSMIL---SGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLI 831

Query: 294  KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
               C   +I+ A +++  M     I  D  + + ++           +    +EM  +GI
Sbjct: 832  SKCCANGEINWAFDMVNVMTS-LGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGI 890

Query: 354  APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            +P    Y  L+         K A  V +EM+   ++    VA + +V    + G  +EA 
Sbjct: 891  SPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAH-KICPPNVAESAMVRALAKCGKADEAS 949

Query: 414  RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
             ++  M +    P +A++ +L +         EAL L + +   C +K + V+ +  +  
Sbjct: 950  LLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALEL-RVVMSNCGLKLDLVSYNVLITG 1008

Query: 474  PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    L A  D+ +       A E+   M+  G   N T YK +
Sbjct: 1009 --------LCAKGDMAI-------AFELFEEMKRDGFLANVTTYKAL 1040



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +++L+  Y R G+++++  I   M   GF P+V T  ++   I    K  E + +W  +
Sbjct: 125 VFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIV---KSCEDVSVWSFL 181

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           KE              L   + PD    + L ++      F+K+  ++  ME+ G  P  
Sbjct: 182 KEM-------------LKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTI 228

Query: 515 TKYKKI 520
             Y  +
Sbjct: 229 VTYNTV 234


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 126/554 (22%), Positives = 226/554 (40%), Gaps = 120/554 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +++ G+  +V  ++ ++     SGD     S K  D+     R    PD VS        
Sbjct: 120 IMKRGFHLNVYNFNLLLKGFCQSGD-----SHKAMDLFCMMKRNCLIPDCVS-------- 166

Query: 61  YNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           YN V+N    L K K+ ++   LF +M     KP+ +T++ +I    +         +LE
Sbjct: 167 YNTVING---LCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLE 223

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV--------------CK 163
            + +MG+   +  + +L++ +   GD+E  + +   M   R++V              CK
Sbjct: 224 EMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEML--RKNVTPNVVTYSCLMNALCK 281

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSRI 215
             +  +         G     D V   +L + ++ +            ++ +   PN+  
Sbjct: 282 KQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVT 341

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD------- 268
           Y  ++ G   EGRV D + +L  M ++      PD VTY+T+V  L   G +D       
Sbjct: 342 YNAIINGLCKEGRVDDALGILETMAKK---GKKPDVVTYSTLVKGLCGVGKIDEAVDLLN 398

Query: 269 ------------------------------RARQVLAEMTRIGVPANRITYNILLKGYCQ 298
                                          A++V   M   G P+N +TYNIL+ GY  
Sbjct: 399 LLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLS 458

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ KA EL ++ A D+ I P+  +Y +LI+G   +   + A   FN+ RA G  PT  
Sbjct: 459 AGKLTKALELWKD-AVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVS 517

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG---------------- 402
            Y TLM +    S  + A  +F EM R+     D+V++N++++G                
Sbjct: 518 EYNTLMASLCRESSVEQARNLFQEM-RNANHDPDVVSFNIIIDGTLKAGDVESAKELLLE 576

Query: 403 -------------------YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
                              + ++G ++EA  + ERM   G  P+   + SL  G SL  K
Sbjct: 577 MLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGK 636

Query: 444 PGEALLLWKEIKER 457
             + + + +++ ++
Sbjct: 637 TEKVVSMLQQMADK 650



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 151/335 (45%), Gaps = 26/335 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ + F  N   +  L+KG+   G     + +   M+R   N   PD V+Y TV++ L K
Sbjct: 120 IMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKR---NCLIPDCVSYNTVINGLCK 176

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +  A+++  EM       N +T++ L+ G+C+   +++   LL EM +   +E DV 
Sbjct: 177 GKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEM-EKMGLEGDVF 235

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            Y+ LI GF    D       FNEM  + + P  ++Y+ LM A     + K A ++ D M
Sbjct: 236 VYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTM 295

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
               +V+ D+VA+ +L +G  + G   +A ++++ M + G  PN  TY ++ NG+    +
Sbjct: 296 -TGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGR 354

Query: 444 PGEALLLWKE----------------IKERCEVKK--EGVNADSDLPPP---LKPDEELL 482
             +AL + +                 +K  C V K  E V+  + L      +KPD    
Sbjct: 355 VDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAF 414

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           + +     +    R A  +   M E G P N   Y
Sbjct: 415 NLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTY 449



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P   + + ++ + V       A  VL  + + G   N   +N+LLKG+CQ     KA +L
Sbjct: 92  PCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDL 151

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
              M  +  I PD VSYN +I+G         A   F EM+     P  ++++ L+  F 
Sbjct: 152 FCMMKRNCLI-PDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFC 210

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
            +   +    + +EM     ++ D+  ++ L+ G+C  G +E  K +   M      PNV
Sbjct: 211 KNGDVEEGFGLLEEM-EKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNV 269

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY  L N +   +K       WKE  +           D+     ++PD      LAD 
Sbjct: 270 VTYSCLMNALCKKQK-------WKEAAQM---------LDTMTGCKVRPDVVAYTVLADG 313

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +      A++++  M + G  PN   Y  I
Sbjct: 314 LSKNGRASDAIKVLDLMVKRGEEPNNVTYNAI 345



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 162/385 (42%), Gaps = 52/385 (13%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR------------VRKFSDPDIVSDS- 54
           P V A++ +   L+ +G     +++K+ D++VKR            +        V D+ 
Sbjct: 302 PDVVAYTVLADGLSKNGRAS--DAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDAL 359

Query: 55  -----------KPDTAAYNAVLNACANLGKPKKFLQLFDQM--HEFGAKPDVLTYNVMIK 101
                      KPD   Y+ ++     +GK  + + L + +   EF  KPDV  +N++I+
Sbjct: 360 GILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQ 419

Query: 102 -LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
            LC +   +H    V   ++E G    + T+  L+  Y+  G L  A        E  +D
Sbjct: 420 ELCKQRRLRHA-KRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKA-------LELWKD 471

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
                   +   Y+    G          K L N    S   P + +        Y TLM
Sbjct: 472 AVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSE--------YNTLM 523

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASH-PDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
                E  V     +   MR    NA+H PD V++  ++   +KAG ++ A+++L EM  
Sbjct: 524 ASLCRESSVEQARNLFQEMR----NANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLN 579

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
           + +  + IT++IL+  + +  Q+D+A  L   M     + PD V ++ L+ G+ L   + 
Sbjct: 580 MNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHV-PDAVLFDSLLKGYSLKGKTE 638

Query: 340 GALTFFNEMRARGIA-PTKISYTTL 363
             ++   +M  + +   +K++ T L
Sbjct: 639 KVVSMLQQMADKDVVLDSKLTSTIL 663


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 178/401 (44%), Gaps = 25/401 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +   +NAV++   + G+  K +++FD M + G  PDV +Y++++    +        ++L
Sbjct: 282 NNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYML 341

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +   GIT  + ++ SL+      G +E+A  + + +++       I+  + L      
Sbjct: 342 VEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQH 401

Query: 177 NEGD---DDDDDEVFEKLLPNSINPSSE-----------------PPLLPKTFAPNSRIY 216
            + +   D  +D V    +P++ N SS                    ++     PN    
Sbjct: 402 LDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTC 461

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T L+ G+ NEG + +    L  +R+       P   TY  ++  L K    +    + A+
Sbjct: 462 TILVHGFSNEGLIGEAFLFLDKVRQ---FGVVPSLCTYRVIIHGLCKVNKPNDMWGIFAD 518

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M + G   + + Y+I++ G+ + L + +A  L  +M D+   +P++ +Y  LI+G    D
Sbjct: 519 MIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGT-KPNIFTYTSLINGLCHDD 577

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
                +T F  M   G+AP +I YT+L+  +   S  K A ++F EM     +  D   +
Sbjct: 578 KLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREM-ETEGLSADSFVY 636

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
             L+ G+ ++  ++ A+  +E M   G  P V TY  L  G
Sbjct: 637 TCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVG 677



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 149/317 (47%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L  + +  N+  +  ++ G+ ++G+V   + +   M++       PD  +Y+ +V  L K
Sbjct: 274 LCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKK---CGFVPDVHSYSILVDGLCK 330

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +     +L EM R G+  N ++Y+ LL G C+  +++ A EL + + D    + D +
Sbjct: 331 QGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQG-FKHDHI 389

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            Y+I++ G     D       +N+M      P   +Y++L+ A+    Q K A +VF+ M
Sbjct: 390 VYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELM 449

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + D  +  ++V   +LV G+   GL+ EA   ++++++ G  P++ TY  + +G+    K
Sbjct: 450 VSDG-ICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNK 508

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
           P +   ++ ++ +R  V                PD  L   + D  V+A   ++A  +  
Sbjct: 509 PNDMWGIFADMIKRGYV----------------PDTVLYSIIIDGFVKALDLQEAFRLYY 552

Query: 504 CMEEHGIPPNKTKYKKI 520
            M + G  PN   Y  +
Sbjct: 553 KMVDEGTKPNIFTYTSL 569



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 181/433 (41%), Gaps = 42/433 (9%)

Query: 88  GAKPDVLTY-NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           G +P+  TY   +  LC     K    F L+ + + G       F +++  +   G +  
Sbjct: 243 GVRPNAATYATYLYGLCHAKQVKSAWNF-LQMLCQRGYPCNNYCFNAVIHGFCHDGQVHK 301

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV--FEKLLPNSINPSSEPPL 204
           A  +   M++     C  +   D+  YS   +G     D +  +  L+  + N       
Sbjct: 302 AIEVFDGMKK-----CGFVP--DVHSYSILVDGLCKQGDVLTGYYMLVEMARN------- 347

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
                 PN   Y++L+ G    GRV     +    +R +D     DH+ Y+ V+    + 
Sbjct: 348 ---GITPNLVSYSSLLHGLCRAGRVELAFELF---KRLKDQGFKHDHIVYSIVLHGCCQH 401

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
             ++    +  +M       +   Y+ L+  YC+  Q+ +A E+   M  D  I P+VV+
Sbjct: 402 LDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDG-ICPNVVT 460

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
             IL+ GF        A  F +++R  G+ P+  +Y  ++      ++P     +F +M+
Sbjct: 461 CTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMI 520

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           +   V  D V ++++++G+ +   ++EA R+  +M + G  PN+ TY SL NG+    K 
Sbjct: 521 KRGYVP-DTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKL 579

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            E + L+K +                +   L PD  L  +L     + +  + ALEI   
Sbjct: 580 PEVMTLFKHM----------------IGEGLAPDRILYTSLIACYCKRSNMKAALEIFRE 623

Query: 505 MEEHGIPPNKTKY 517
           ME  G+  +   Y
Sbjct: 624 METEGLSADSFVY 636



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/407 (20%), Positives = 175/407 (42%), Gaps = 41/407 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G++P V ++S +V  L   GD      +  + ++V+  R    P++VS        
Sbjct: 309 MKKCGFVPDVHSYSILVDGLCKQGD-----VLTGYYMLVEMARNGITPNLVS-------- 355

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+++L+     G+ +   +LF ++ + G K D + Y++++  C +     +   +   ++
Sbjct: 356 YSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMV 415

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
                     + SL+ AY     L+ A  + + M      +C  +    +  +   NEG 
Sbjct: 416 HHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVS--DGICPNVVTCTILVHGFSNEGL 473

Query: 181 DDDDDEVFEKLLPNSINPS--------------SEP--------PLLPKTFAPNSRIYTT 218
             +     +K+    + PS              ++P         ++ + + P++ +Y+ 
Sbjct: 474 IGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSI 533

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++ G++    + +  R+   M    D  + P+  TYT++++ L     +     +   M 
Sbjct: 534 IIDGFVKALDLQEAFRLYYKM---VDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMI 590

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+  +RI Y  L+  YC++  +  A E+ REM  +  +  D   Y  LI GF  +   
Sbjct: 591 GEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEG-LSADSFVYTCLIGGFSKVLAM 649

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
            GA  F  EM  +G+ PT ++YT L+  +      K A  +++ ML+
Sbjct: 650 DGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQ 696


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 155/312 (49%), Gaps = 25/312 (8%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   YT  +KG+  +G +++ + +    R  E++   P+  +YTT +  L   G  D  
Sbjct: 217 PNDYTYTIAIKGFCRKGNLAEAIDVF---RDMEESGVTPNSFSYTTFIEGLCLHGRSDLG 273

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL ++    +P +   Y ++++G+C ++++ +A+ +LREM +     PDV  Y  LI 
Sbjct: 274 FKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREM-EKQGFAPDVYVYCALIS 332

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPR 388
           G+ ++ +   AL   +EM ++G+    +  +++++     SQ  +A++V ++    +   
Sbjct: 333 GYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGL---SQMGMASEVANQFKEFKKMG 389

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +  D   +N++++  C++G VEEA  ++  MK     P++  Y ++ +G  L  K  +AL
Sbjct: 390 IFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDAL 449

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            +++E+K+                   KPD    + LA    R    ++AL ++  ME  
Sbjct: 450 NIYREMKDIGH----------------KPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQ 493

Query: 509 GIPPNKTKYKKI 520
           G+ P+   +  I
Sbjct: 494 GVKPDTVTHNMI 505



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 43/396 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  V++     GK    L ++ +M + G KPD++TYNV+    +R       + +
Sbjct: 427 PDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSL 486

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +   G+     T   ++      G ++ A    QA  +   + C       LE+YS+
Sbjct: 487 LNYMETQGVKPDTVTHNMIIEGLCIGGKVDDA----QAFFDNLEEKC-------LENYSA 535

Query: 176 ENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
              G  + +  ++ F  L    I  S +  +L K        +  L+    +EG     +
Sbjct: 536 MVNGYCEANHVNKAFALL----IRLSKQGRILKKA------SFFKLLGNLCSEGDSEKAL 585

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M     N   P  + Y+ V+ AL +AG M++A+ V   +   G+  + ITY I++
Sbjct: 586 CLLETMVALNIN---PTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMI 642

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID---------------DS 338
            GYC+  ++ +A  +L +M +   IEPDV++Y +L++    ID               + 
Sbjct: 643 NGYCRMNKMKEAWHVLGDMKNRG-IEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENM 701

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
                 ++EM+   I P  I YT L+     ++  + A  +F+EM+ D  +  D V +  
Sbjct: 702 MDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMI-DRGLAPDTVTYTA 760

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
           L+ GYC +G +++A  + + M   G  P+  T   L
Sbjct: 761 LLSGYCNVGNIKKAVVLFDEMLNKGIRPDAHTMSVL 796



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 198/480 (41%), Gaps = 55/480 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y A+++    +G   K L L D+M   G K + +  + +++  ++      +   
Sbjct: 322 PDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQ 381

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            +   +MGI      +  ++ A    G +E A  ++  M+ G++ V  II      +Y++
Sbjct: 382 FKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMK-GKKMVPDII------NYTT 434

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G         +  + +++N   E   +     P+   Y  L  G+   G   + + +
Sbjct: 435 VISG------YFLKGKVVDALNIYREMKDIGHK--PDIVTYNVLAGGFSRNGLTQEALSL 486

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  Q      PD VT+  ++  L   G +D A+     +    +      Y+ ++ G
Sbjct: 487 LNYMETQ---GVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLE----NYSAMVNG 539

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+   ++KA  LL  ++   +I     S+  L+       DS  AL     M A  I P
Sbjct: 540 YCEANHVNKAFALLIRLSKQGRILKKA-SFFKLLGNLCSEGDSEKALCLLETMVALNINP 598

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T I Y+ ++ A   + + + A  VF+ ML D  +  D++ + +++ GYCRM  ++EA  +
Sbjct: 599 TMIMYSKVIGALFQAGEMEKAQYVFN-MLVDRGLAPDVITYTIMINGYCRMNKMKEAWHV 657

Query: 416 IERMKENGFYPNVATYGSLANGISL-----------ARKPGEALL----LWKEIKERCEV 460
           +  MK  G  P+V TY  L N  S            A K  E ++    LW E+K     
Sbjct: 658 LGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMK----- 712

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  D D    +KPD      L D   +    + A+ +   M + G+ P+   Y  +
Sbjct: 713 -------DMD----IKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTAL 761



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 152/351 (43%), Gaps = 48/351 (13%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KPD   YN +    +  G  ++ L L + M   G KPD +T+N++I+ LC          
Sbjct: 461 KPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQA 520

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLED 172
           F  + + E     C+  + ++V  Y     +  A   +++  ++GR     I+++     
Sbjct: 521 F-FDNLEEK----CLENYSAMVNGYCEANHVNKAFALLIRLSKQGR-----ILKKASFFK 570

Query: 173 YSSE--NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                 +EGD +    + E ++  +INP+               +Y+ ++      G + 
Sbjct: 571 LLGNLCSEGDSEKALCLLETMVALNINPTM-------------IMYSKVIGALFQAGEME 617

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
               +   +    D    PD +TYT +++   +   M  A  VL +M   G+  + ITY 
Sbjct: 618 KAQYVFNMLV---DRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYT 674

Query: 291 ILLKGYCQQLQID---------KAKE-------LLREMADDAKIEPDVVSYNILIDGFIL 334
           +LL   C ++ +          K+KE       L  EM  D  I+PDV+ Y +LID    
Sbjct: 675 VLLNN-CSKIDLRSSSSSLDAMKSKENMMDPSALWSEM-KDMDIKPDVICYTVLIDKHCK 732

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
            ++   A+  FNEM  RG+AP  ++YT L+  +      K A  +FDEML 
Sbjct: 733 TNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLN 783



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 195/474 (41%), Gaps = 35/474 (7%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           +A++  C   G   +   +  Q    G  P +L+ N ++     + +  + + +  ++  
Sbjct: 153 DALIKVCVASGMFDQAFDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKA 212

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+     T+   +  +   G+L  A  + + M E             +E        D 
Sbjct: 213 FGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSD- 271

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
                +  K+L + IN  ++ P+    FA     YT +++G+ +E ++ +   +L  M +
Sbjct: 272 -----LGFKVLQDVIN--AKIPM--DVFA-----YTVVIRGFCSEMKLKEAESILREMEK 317

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q      PD   Y  ++S     G++ +A  +  EM   GV  N +  + +L+G  Q   
Sbjct: 318 Q---GFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGM 374

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
             +     +E      I  D   YN+++D    +     A+    EM+ + + P  I+YT
Sbjct: 375 ASEVANQFKEF-KKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYT 433

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           T++  + L  +   A  ++ EM +D   K DIV +N+L  G+ R GL +EA  ++  M+ 
Sbjct: 434 TVISGYFLKGKVVDALNIYREM-KDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMET 492

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC-EVKKEGVNADSDLPPPLKPDEE 480
            G  P+  T+  +  G+ +  K  +A   +  ++E+C E     VN   +     K    
Sbjct: 493 QGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLENYSAMVNGYCEANHVNKAFAL 552

Query: 481 L--LDALADICVRAAFFR------------KALEIVACMEEHGIPPNKTKYKKI 520
           L  L     I  +A+FF+            KAL ++  M    I P    Y K+
Sbjct: 553 LIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKV 606


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 189/423 (44%), Gaps = 43/423 (10%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           +T  +N ++  C    K  + + L  +M  F   PD ++YN ++ +  +  + +    +L
Sbjct: 47  NTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLL 106

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +   G+     TF  LV+ Y   G L+ A  ++  M   R +V       D+  Y++ 
Sbjct: 107 LDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIM--ARNNVLP-----DVRTYTTL 159

Query: 177 NEG--DDDDDDEVFE--------KLLPNS------INPSSEPPLLPKTF----------- 209
             G   D   DE F         KLLP+       IN   E     K F           
Sbjct: 160 IGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGV 219

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN+  Y  ++K Y+ EG++ +    L   R+ E++   PD VT+ T+ +   KAG +  
Sbjct: 220 KPNAVTYNVVVKWYVKEGKMDNAGNEL---RKMEESGFSPDCVTFNTLSNGYCKAGRLSE 276

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +++ EM+R G+  N +T N +L   C + ++D A +LL   +       D VSY  LI
Sbjct: 277 AFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYF-VDEVSYGTLI 335

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            G+  +    G    ++EM+ + I P+ I+Y T++     S +   +    +E+L    V
Sbjct: 336 MGYFKV----GKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLV 391

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D   +N ++ GYCR G V++A     +M +  F P++ T   L  G+       +AL 
Sbjct: 392 P-DQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALK 450

Query: 450 LWK 452
           L+K
Sbjct: 451 LFK 453



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 131/247 (53%), Gaps = 7/247 (2%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N+  +  L+ G   E ++S+ + ++G M+     +  PD+V+Y T++  L K G ++ AR
Sbjct: 47  NTNTFNILICGCCIENKLSEAIGLIGKMKHF---SCFPDNVSYNTILDVLCKKGKLNEAR 103

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +L +M   G+  NR T+NIL+ GYC+   + +A E++  MA +  + PDV +Y  LI G
Sbjct: 104 DLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARN-NVLPDVRTYTTLIGG 162

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA-FALSSQPKLANKVFDEMLRDPRVK 390
                    A    +EM    + P  ++Y  L+   F  SS  K   ++ DEM     VK
Sbjct: 163 LCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLK-GFELIDEM-EGKGVK 220

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            + V +N++V+ Y + G ++ A   + +M+E+GF P+  T+ +L+NG   A +  EA  +
Sbjct: 221 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRM 280

Query: 451 WKEIKER 457
             E+  +
Sbjct: 281 MDEMSRK 287



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 178/449 (39%), Gaps = 76/449 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK--PDT 58
           M R+  LP V+ ++T++  L     DG ++              F   D + + K  P  
Sbjct: 144 MARNNVLPDVRTYTTLIGGLCK---DGKIDEA------------FRLRDEMENLKLLPHV 188

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YN ++N C       K  +L D+M   G KP+ +TYNV++K   +  +       L +
Sbjct: 189 VTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRK 248

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           + E G +    TF +L   Y   G L  A  ++  M      +  +     L     E +
Sbjct: 249 MEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERK 308

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            DD        KLL ++           + +  +   Y TL+ GY   G+      M   
Sbjct: 309 LDDA------YKLLSSAS---------KRGYFVDEVSYGTLIMGYFKVGKSXXWDEM--- 350

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
               ++    P  +TY T++  L ++G  D++     E+   G+  ++ TYN ++ GYC+
Sbjct: 351 ----KEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCR 406

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + Q+DKA     +M   +  +PD+ + NIL+ G         AL  F    ++G A    
Sbjct: 407 EGQVDKAFHFRNKMVKKS-FKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKA---- 461

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
                                           +D V +N ++ G C  G  EEA  ++  
Sbjct: 462 --------------------------------IDAVTFNTIISGLCEEGRFEEAFDLLAE 489

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEA 447
           M+E    P+  T+ ++ + ++ A +  EA
Sbjct: 490 MEEKKLGPDCYTHNAILSALADAGRMKEA 518



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 5/192 (2%)

Query: 249 PDHVTYTTVVSALVK---AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
           P+ +T  T++ ALV+     S+  ++ + +++ ++GV  N  T+NIL+ G C + ++ +A
Sbjct: 8   PNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCIENKLSEA 67

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             L+ +M   +   PD VSYN ++D          A     +M+  G+ P + ++  L+ 
Sbjct: 68  IGLIGKMKHFSCF-PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVS 126

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            +      K A +V D M R+  V  D+  +  L+ G C+ G ++EA R+ + M+     
Sbjct: 127 GYCKLGWLKEAAEVIDIMARN-NVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLL 185

Query: 426 PNVATYGSLANG 437
           P+V TY  L NG
Sbjct: 186 PHVVTYNMLING 197



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 24/175 (13%)

Query: 348 MRARGIAPTKISYTTLMKAFA-LSSQPK--LANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           M+   + P  ++  TL+KA     S+P   L+  +F ++++   V+V+   +N+L+ G C
Sbjct: 1   MKRLHLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIK-LGVEVNTNTFNILICGCC 59

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA--LLLWKEIKERCEVKK 462
               + EA  +I +MK    +P+  +Y ++ + +    K  EA  LLL        ++K 
Sbjct: 60  IENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLL--------DMKN 111

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            G          L P+    + L     +  + ++A E++  M  + + P+   Y
Sbjct: 112 NG----------LFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTY 156


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/467 (22%), Positives = 196/467 (41%), Gaps = 52/467 (11%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           + L   ++  G KPDV T  ++I      +       VL  + ++G+   + TF +L+  
Sbjct: 91  ISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLING 150

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
               G++  A     ++ +       +  + +   Y +   G            L  + +
Sbjct: 151 LCAEGNVARAARFADSLED-------MGHQSNSYTYGAIING------------LCKAGD 191

Query: 198 PSSEPPLLPKTFAPNSRI-----YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
            S     L K    N  +     Y+T+M     +G V + + +   M  +      PD V
Sbjct: 192 TSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSK---GIQPDLV 248

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
            Y +++  L   G    A  +L  M R G+  N  T+N+L+  +C+   I +AK ++  M
Sbjct: 249 AYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFM 308

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                +EPDVV+YN +I G  L+     A+  F  M  +G  P  ++Y++L+  +  +  
Sbjct: 309 VH-VGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKN 367

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A  +  EM+ +  +  D+V W+ L+ G+C+ G  E AK +   M E+  +PN+ T  
Sbjct: 368 INKALFLLGEMV-NSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCA 426

Query: 433 SLANGISLARKPGEALLLWKEIKE----------------RCEVKKEGVNADSDLPPPLK 476
            + +G+   +   EA+ L++E+++                 C   K  +N   +L   L 
Sbjct: 427 IILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGK--LNDAQELFSCLP 484

Query: 477 PDEELLDALADICVRAAFFRKAL-----EIVACMEEHGIPPNKTKYK 518
                +D +A   +     ++ L      ++  MEE+G  PN+  Y 
Sbjct: 485 SKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYN 531



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 103/469 (21%), Positives = 189/469 (40%), Gaps = 70/469 (14%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDS-----KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           KLF ++VK     +   ++        KPD      ++N   +L        +   M + 
Sbjct: 76  KLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKI 135

Query: 88  GAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           G  P V+T+  +I  LCA  +      F  + + +MG      T+ +++      GD   
Sbjct: 136 GVDPTVVTFATLINGLCAEGNVARAARFA-DSLEDMGHQSNSYTYGAIINGLCKAGDTSG 194

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP-------- 198
           A   ++ ++    D+  +I    + D S   +G   +   +F  +    I P        
Sbjct: 195 AILYLEKIKGRNCDLDVVIAYSTIMD-SLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSL 253

Query: 199 --------------SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                         +    ++ K   PN + +  L+  +  +G +S    ++G M     
Sbjct: 254 IHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHV-- 311

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               PD VTY +V+S       M  A +V   M   G   N +TY+ L+ G+C+   I+K
Sbjct: 312 -GVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINK 370

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGF-----------------------------ILI 335
           A  LL EM +   + PDVV+++ LI GF                             I++
Sbjct: 371 ALFLLGEMVNSG-LNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIIL 429

Query: 336 DD------SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           D        + A++ F EM    +    + Y  ++       +   A ++F   L    +
Sbjct: 430 DGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELF-SCLPSKGI 488

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           K+D+VA+  +++G C+ GL+++A+ ++ +M+ENG  PN  TY     G+
Sbjct: 489 KIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGL 537



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 143/351 (40%), Gaps = 40/351 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G +P+V+ ++ +V      G             ++ R +      +    +PD   
Sbjct: 273 MMRKGIMPNVQTFNVLVDNFCKDG-------------MISRAKTIMGFMVHVGVEPDVVT 319

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+V++    L +    +++F+ M   G  P+++TY+ +I    +    +  +F+L  ++
Sbjct: 320 YNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMV 379

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR----DVCKIIRELDLEDYSSE 176
             G+   + T+ +L+  +   G  E A+ +   M E  +      C II           
Sbjct: 380 NSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIIL---------- 429

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                   D +F K   +S   S    +       N  IY  ++ G  + G+++D   + 
Sbjct: 430 --------DGLF-KCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELF 480

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             +  +       D V YTT++  L K G +D A  +L +M   G   N  TYN+ ++G 
Sbjct: 481 SCLPSK---GIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGL 537

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            Q+  I ++ + L  M     +  D  +  +LI  F    +++    F  E
Sbjct: 538 LQRYDISRSTKYLLLMKGKG-LSADATTTELLISYFSANKENSALHVFLQE 587


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 197/439 (44%), Gaps = 35/439 (7%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR----KHLL 112
           D+   N V++A    G   + ++L  ++  FG +PD+++YN ++K    A R    + L+
Sbjct: 177 DSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELM 236

Query: 113 VFV------LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------ 154
           V +      L ++ E G T  +  + +++      G  E+A  I+  M            
Sbjct: 237 VEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCY 296

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLP 206
               + +C   R  + ED  +E   +D   D+V   +L +    +            +L 
Sbjct: 297 NTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLE 356

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
               P+   YTT++ G+  EG V + V +L   +        P+ ++YT V+  L +A  
Sbjct: 357 HGCIPDVITYTTVINGFCKEGLVDEAVMLL---KNMSACGCKPNTISYTIVLKGLCRAER 413

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
              A+++++ M + G   N +T+N L+   C++   ++A ELL++M  +    PD++SY+
Sbjct: 414 WVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNG-CSPDLISYS 472

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +IDG      +  AL   N M  +GI P  I Y+++  A +   +     ++FD  ++D
Sbjct: 473 TVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDS-IQD 531

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V+ D   +N ++   C+    + A      M  NG  PN +TY  L  G++      E
Sbjct: 532 ATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVRE 591

Query: 447 ALLLWKEIKERCEVKKEGV 465
           A  L  E+  R  V+K  V
Sbjct: 592 AQDLLSELCSRRAVRKHLV 610



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 162/331 (48%), Gaps = 34/331 (10%)

Query: 211 PNSRIYTTLMKGYMNEGR--VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           P+ R+Y T++ G   +G   V++ +     + R       P+ V Y TV+  L  A   +
Sbjct: 256 PDLRMYATIIDGICKDGHHEVANDI-----LSRMPSYGLKPNVVCYNTVLKGLCSAERWE 310

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +LAEM +   P + +T+NIL+  +CQ   +D+  ELL +M +   I PDV++Y  +
Sbjct: 311 EAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCI-PDVITYTTV 369

Query: 329 IDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           I+GF    L+D+   A+     M A G  P  ISYT ++K    + +   A ++   M++
Sbjct: 370 INGFCKEGLVDE---AVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQ 426

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              +  + V +N L+   C+ GL E+A  ++++M  NG  P++ +Y ++ +G+  A K  
Sbjct: 427 QGCLP-NPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 485

Query: 446 EALLLWKEIKERCEVKKEGVNAD--SDLPPPLKPDE--ELLDALADICVR--AAFFR--- 496
           EAL L   +  +       + +   S L    + D+  ++ D++ D  VR  AA +    
Sbjct: 486 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 545

Query: 497 ----------KALEIVACMEEHGIPPNKTKY 517
                     +A++  A M  +G  PN++ Y
Sbjct: 546 SSLCKRWETDRAIDFFAYMVSNGCMPNESTY 576



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 126/273 (46%), Gaps = 26/273 (9%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA--- 313
           VVSA+ + G +D   ++L ++   G   + ++YN +LKG C   + D  +EL+ EM    
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVH 243

Query: 314 ------DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
                  +    PD+  Y  +IDG         A    + M + G+ P  + Y T++K  
Sbjct: 244 EALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGL 303

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + + + A  +  EM ++    +D V +N+LV+ +C+ GLV+    ++E+M E+G  P+
Sbjct: 304 CSAERWEEAEDLLAEMFQE-DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPD 362

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY ++ NG        EA++L K +   C  K   ++                  L  
Sbjct: 363 VITYTTVINGFCKEGLVDEAVMLLKNMSA-CGCKPNTISYTI--------------VLKG 407

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +C RA  +  A E+++ M + G  PN   +  +
Sbjct: 408 LC-RAERWVDAQELISHMIQQGCLPNPVTFNTL 439



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 142/345 (41%), Gaps = 44/345 (12%)

Query: 5   GYLPHVKAWSTVVSRLAAS--------------GDDGPVESVKLFDVV--------VKRV 42
           G  P+V  ++TV+  L ++               +D P++ V    +V        V RV
Sbjct: 288 GLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRV 347

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
            +  +  +     PD   Y  V+N     G   + + L   M   G KP+ ++Y +++K 
Sbjct: 348 IELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKG 407

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
             RA R      ++  +++ G      TF +L+      G   +AE  ++ +++   + C
Sbjct: 408 LCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKG---LAEQAIELLKQMLVNGC 464

Query: 163 KIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
                 DL  YS+  +  G     +E  E LL   IN         K   PN+ IY+++ 
Sbjct: 465 SP----DLISYSTVIDGLGKAGKTEEALE-LLNVMIN---------KGITPNTIIYSSMA 510

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
                EGR    ++M  ++   +D     D   Y  V+S+L K    DRA    A M   
Sbjct: 511 SALSREGRTDKIIQMFDSI---QDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSN 567

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           G   N  TY IL++G   +  + +A++LL E+     +   +V +
Sbjct: 568 GCMPNESTYTILIRGLASEGLVREAQDLLSELCSRRAVRKHLVRH 612



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/406 (18%), Positives = 164/406 (40%), Gaps = 56/406 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P ++ ++T++  +   G        ++ + ++ R+  +         KP+   
Sbjct: 249 MPEHGCTPDLRMYATIIDGICKDGHH------EVANDILSRMPSYG-------LKPNVVC 295

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN VL    +  + ++   L  +M +     D +T+N+++    +      ++ +LE++L
Sbjct: 296 YNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 355

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------------RDVCKIIREL 168
           E G    + T+ +++  +   G ++ A  +++ M                + +C+  R +
Sbjct: 356 EHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWV 415

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           D ++  S                            ++ +   PN   + TL+     +G 
Sbjct: 416 DAQELISH---------------------------MIQQGCLPNPVTFNTLINFMCKKGL 448

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
               + +L  M     N   PD ++Y+TV+  L KAG  + A ++L  M   G+  N I 
Sbjct: 449 AEQAIELLKQMLV---NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTII 505

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y+ +     ++ + DK  ++   +  DA +  D   YN +I       ++  A+ FF  M
Sbjct: 506 YSSMASALSREGRTDKIIQMFDSI-QDATVRSDAALYNAVISSLCKRWETDRAIDFFAYM 564

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            + G  P + +YT L++  A     + A  +  E+     V+  +V
Sbjct: 565 VSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSRRAVRKHLV 610



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 114/268 (42%), Gaps = 18/268 (6%)

Query: 255 TTVVSALVKAG-SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           + ++ +L  AG + D AR     +   G  A  + YN ++ GYC+  Q+  A+ L   + 
Sbjct: 48  SALIRSLCAAGRTADAARA----LDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV- 102

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
               + P+  +Y  ++         A ALT  +EM  RG A T      +++A       
Sbjct: 103 ---PVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGF 159

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           + A +   ++L      +D    N++V   C  G V+E   ++ ++   G  P++ +Y +
Sbjct: 160 RSAVRAL-QVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNA 218

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP-PLKPDEELLDALADICVRA 492
           +  G+ +A++       W +++E          A S +P     PD  +   + D   + 
Sbjct: 219 VLKGLCMAKR-------WDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKD 271

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
                A +I++ M  +G+ PN   Y  +
Sbjct: 272 GHHEVANDILSRMPSYGLKPNVVCYNTV 299


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/465 (22%), Positives = 208/465 (44%), Gaps = 45/465 (9%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           L LFD+M + G  P+ +T++V+I+   +       +   +++  +G+T  +    +++  
Sbjct: 359 LVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQG 418

Query: 138 YV-GFGDLEIAETIVQAMREGRRDV--CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPN 194
           ++ G    E  +   ++   G  +V  C  I     +      +G  D+  E+  K+   
Sbjct: 419 WLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCK------QGKTDEATELLSKMESR 472

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
            I              PN   Y  +M G+  +  + D  R++       +    P++ TY
Sbjct: 473 GI-------------GPNVVSYNNVMLGHCRQKNM-DLARIV--FSNILEKGLKPNNYTY 516

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           + ++    +      A +V+  MT   +  N + Y  ++ G C+  Q  KA+ELL  M +
Sbjct: 517 SILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIE 576

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           + ++    +SYN +IDGF    +   A+  + EM   GI+P  I+YT+LM     +++  
Sbjct: 577 EKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMD 636

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A ++ DEM ++  VK+DI A+  L++G+C+   +E A  +   + E G  P+   Y SL
Sbjct: 637 QALEMRDEM-KNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSL 695

Query: 435 ANGISLARKPGEALLLWKEIKE---RCEVKK-----EGVNADSDL-----------PPPL 475
            +G         AL L+K++ +   RC++       +G+  D +L              L
Sbjct: 696 ISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGL 755

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            PDE +   + +   +   F K +++   M+++ + PN   Y  +
Sbjct: 756 VPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAV 800



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 169/382 (44%), Gaps = 19/382 (4%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +YN V+              +F  + E G KP+  TY+++I  C R   +   + V
Sbjct: 476 PNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEV 535

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +  +    I +    +Q+++      G    A  ++  M E +R     +    + D   
Sbjct: 536 VNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIID-GF 594

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG+ D     +E++  N I             +PN   YT+LM G     R+   + M
Sbjct: 595 FKEGEMDSAVAAYEEMCGNGI-------------SPNVITYTSLMNGLCKNNRMDQALEM 641

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M+ +      P    Y  ++    K  +M+ A  + +E+   G+  ++  YN L+ G
Sbjct: 642 RDEMKNKGVKLDIP---AYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISG 698

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +     +  A +L ++M  D  +  D+ +Y  LIDG +   +   A   + EM+A G+ P
Sbjct: 699 FRNLGNMVAALDLYKKMLKDG-LRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVP 757

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            +I YT ++   +   Q     K+F+EM ++  V  +++ +N ++ G+ R G ++EA R+
Sbjct: 758 DEIIYTVIVNGLSKKGQFVKVVKMFEEMKKN-NVTPNVLIYNAVIAGHYREGNLDEAFRL 816

Query: 416 IERMKENGFYPNVATYGSLANG 437
            + M + G  P+ AT+  L +G
Sbjct: 817 HDEMLDKGILPDGATFDILVSG 838



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/480 (22%), Positives = 208/480 (43%), Gaps = 64/480 (13%)

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL-CMTTF 131
           KP + L++  +  E GA+PD L Y++ ++ C +     +   +L  + E  + +    T+
Sbjct: 248 KPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETY 307

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
            S++ A V  G+++ A  +   M             +++   +S   G   ++D V   +
Sbjct: 308 TSVILASVKQGNMDDAIRLKDEMLSDGIS-------MNVVAATSLITGHCKNNDLVSALV 360

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM------------ 239
           L + +    E P      +PNS  ++ L++ +   G +   +     M            
Sbjct: 361 LFDKM--EKEGP------SPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHV 412

Query: 240 ----------RRQEDNASHPDHVTYT---------TVVSALVKAGSMDRARQVLAEMTRI 280
                     ++ E+     D    T         T++S L K G  D A ++L++M   
Sbjct: 413 HTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESR 472

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           G+  N ++YN ++ G+C+Q  +D A+ +   + +   ++P+  +Y+ILIDG     D   
Sbjct: 473 GIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKG-LKPNNYTYSILIDGCFRNHDEQN 531

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           AL   N M +  I    + Y T++       Q   A ++   M+ + R+ V  +++N ++
Sbjct: 532 ALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSII 591

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +G+ + G ++ A    E M  NG  PNV TY SL NG+    +  +AL +      R E+
Sbjct: 592 DGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEM------RDEM 645

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           K +GV    D+P           AL D   + +    A  + + + E G+ P++  Y  +
Sbjct: 646 KNKGVKL--DIPA--------YGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSL 695



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 163/377 (43%), Gaps = 21/377 (5%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY-NVMIKLCARASRKHLLVFVLERIL 120
           N +L+     GK  +  +L  +M   G  P+V++Y NVM+  C R     L   V   IL
Sbjct: 447 NTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHC-RQKNMDLARIVFSNIL 505

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+     T+  L+       D + A  +V  M     +V  ++ +  +       +  
Sbjct: 506 EKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTS 565

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                    +LL N I          K    +   Y +++ G+  EG +   V    A  
Sbjct: 566 KA------RELLANMIE--------EKRLCVSCMSYNSIIDGFFKEGEMDSAV---AAYE 608

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               N   P+ +TYT++++ L K   MD+A ++  EM   GV  +   Y  L+ G+C++ 
Sbjct: 609 EMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRS 668

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ++ A  L  E+ ++  + P    YN LI GF  + +   AL  + +M   G+     +Y
Sbjct: 669 NMESASALFSELLEEG-LNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTY 727

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTL+          LA++++ EM     V  +I+ + ++V G  + G   +  ++ E MK
Sbjct: 728 TTLIDGLLKDGNLILASELYTEMQAVGLVPDEII-YTVIVNGLSKKGQFVKVVKMFEEMK 786

Query: 421 ENGFYPNVATYGSLANG 437
           +N   PNV  Y ++  G
Sbjct: 787 KNNVTPNVLIYNAVIAG 803



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 132/314 (42%), Gaps = 54/314 (17%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           +YN++++     G+    +  +++M   G  P+V+TY  ++    + +R    + + + +
Sbjct: 586 SYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEM 645

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G+ L +  + +L+  +    ++E A  +                             
Sbjct: 646 KNKGVKLDIPAYGALIDGFCKRSNMESASAL----------------------------- 676

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                   F +LL   +NPS +P            IY +L+ G+ N G   + V  L   
Sbjct: 677 --------FSELLEEGLNPS-QP------------IYNSLISGFRNLG---NMVAALDLY 712

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           ++   +    D  TYTT++  L+K G++  A ++  EM  +G+  + I Y +++ G  ++
Sbjct: 713 KKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKK 772

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q  K  ++  EM  +  + P+V+ YN +I G     +   A    +EM  +GI P   +
Sbjct: 773 GQFVKVVKMFEEMKKN-NVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGAT 831

Query: 360 YTTLMKAFALSSQP 373
           +  L+     + QP
Sbjct: 832 FDILVSGQVGNLQP 845



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 20/254 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y +++N      +  + L++ D+M   G K D+  Y  +I    + S       +
Sbjct: 617 PNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASAL 676

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
              +LE G+      + SL++ +   G++  A  + + M ++G R         DL  Y+
Sbjct: 677 FSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLR--------CDLGTYT 728

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +  +G   D + +    L   +              P+  IYT ++ G   +G+    V+
Sbjct: 729 TLIDGLLKDGNLILASELYTEMQAVG--------LVPDEIIYTVIVNGLSKKGQFVKVVK 780

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           M   M++   N   P+ + Y  V++   + G++D A ++  EM   G+  +  T++IL+ 
Sbjct: 781 MFEEMKK---NNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVS 837

Query: 295 GYCQQLQIDKAKEL 308
           G    LQ  +A  L
Sbjct: 838 GQVGNLQPVRAASL 851


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 164/366 (44%), Gaps = 34/366 (9%)

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
           +LQL D     G  P+   +NV+++   R         V + +   G+   + +F ++++
Sbjct: 228 YLQLLDA----GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 283

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG-----DDDDDDEVFEKL 191
                GDL+ AET+ + M E            D+  Y +  +G       +D   VFEK+
Sbjct: 284 GMCRAGDLDGAETLHRRMSEAGVTP-------DVYTYGALIQGLCRVGRIEDARGVFEKM 336

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
               + P             N+ ++T L+  +  +G   D   ML   R   +    PD 
Sbjct: 337 CGRGMKP-------------NAVVFTILIDAHCKKG---DAETMLELHREMRERGVRPDA 380

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VTY  +V+ L +A  +  A  ++ EM   G+  + +TY  L+ GYC++ ++D A E+ + 
Sbjct: 381 VTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQN 440

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M  +  +  D V+Y  LI G      SA A     EM   G+ P   +YT ++ AF    
Sbjct: 441 MVAEG-VGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKG 499

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
             K   ++  EM    R K  +V +N+++ G+C++G ++ A  ++  M   G  P+  TY
Sbjct: 500 DVKTGLRLLKEMQNKGR-KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITY 558

Query: 432 GSLANG 437
             L +G
Sbjct: 559 NILLDG 564



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 139/317 (43%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL     P ++++  LM+  +  G ++    +   M   +        V++ T++S + +
Sbjct: 231 LLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEM---QSRGVRRTVVSFNTMISGMCR 287

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A  +   M+  GV  +  TY  L++G C+  +I+ A+ +  +M     ++P+ V
Sbjct: 288 AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRG-MKPNAV 346

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            + ILID      D+   L    EMR RG+ P  ++Y  ++     +   K A+ +  EM
Sbjct: 347 VFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEM 406

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R   ++ D V +  L++GYC+   ++ A  I + M   G   +  TY +L +G+S A +
Sbjct: 407 -RSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 465

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A  +  E+ E                  L+PD      + D   R    +  L ++ 
Sbjct: 466 SADAERVLGEMME----------------AGLEPDNTTYTMVIDAFCRKGDVKTGLRLLK 509

Query: 504 CMEEHGIPPNKTKYKKI 520
            M+  G  P    Y  I
Sbjct: 510 EMQNKGRKPGVVTYNVI 526



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 114/260 (43%), Gaps = 30/260 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   +  +++A    G  +  L+L  +M E G +PD +TYN ++    RA        
Sbjct: 342 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 401

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDY 173
           ++  +   G+     T+ +L+  Y    +L++A  I Q M  EG          LD   Y
Sbjct: 402 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGV--------GLDEVTY 453

Query: 174 SS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++        G   D + V  +++   + P             ++  YT ++  +  +G 
Sbjct: 454 TALISGLSKAGRSADAERVLGEMMEAGLEP-------------DNTTYTMVIDAFCRKGD 500

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V   +R+L  M   ++    P  VTY  +++   K G M  A  +L  M  IGV  + IT
Sbjct: 501 VKTGLRLLKEM---QNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDIT 557

Query: 289 YNILLKGYCQQLQIDKAKEL 308
           YNILL G+C+  ++   +EL
Sbjct: 558 YNILLDGHCKHGKVTDIEEL 577



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 17/180 (9%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A  F+ ++   G+ P    +  LM+      +   A  VFDEM +   V+  +V++N ++
Sbjct: 224 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEM-QSRGVRRTVVSFNTMI 282

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            G CR G ++ A+ +  RM E G  P+V TYG+L  G+    +  +A  +++++  R   
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGR--- 339

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                         +KP+  +   L D   +       LE+   M E G+ P+   Y  I
Sbjct: 340 -------------GMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAI 386



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 46/99 (46%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   Y  V++A    G  K  L+L  +M   G KP V+TYNV++    +  +      
Sbjct: 482 EPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADM 541

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           +L  ++ +G++    T+  L+  +   G +   E +  A
Sbjct: 542 LLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSA 580


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 120/538 (22%), Positives = 223/538 (41%), Gaps = 66/538 (12%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+++ ++ V+  L A GD     +V LFD + +R              PD   Y+ ++  
Sbjct: 156 PNLQTYNIVLRSLCARGDLD--RAVTLFDSLRRR-----------QVAPDRITYSTLMCG 202

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL-EMGITL 126
            A   +    L L D+M     +PDV+ YN ++  C +A     ++ V ++++ + G   
Sbjct: 203 LAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARP 262

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
            + T+  ++     FG  +    + + M         I   + +        GD D    
Sbjct: 263 NLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLC--RSGDVDGAAR 320

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           V+ +++   +               ++ +Y +L+KG+   GRV +  +   +       A
Sbjct: 321 VYSEIIKTGL-------------VIDAAMYNSLVKGFCQAGRVQEAWKFWDS----AGFA 363

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQV--LAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
              +  TY  ++  L  +G +D A ++  L E     +P + +T+  L+ G CQ    +K
Sbjct: 364 GLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIP-DTVTFGTLIHGLCQNGFANK 422

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  +  E     K + DV SY+ +I+G   +     A+  + +M   G  P    Y  L+
Sbjct: 423 AFTIFEEARVSGK-QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALI 481

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
             F    +   A +++ +M  D      ++ +N L++G C+    +EA  +   M ENGF
Sbjct: 482 SGFCQVYRTSDAVRIYSKM-ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGF 540

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CEVKK--EGVN 466
            P++ TYGSL  G+   +K  +AL +WK+I  +                C   K  E ++
Sbjct: 541 TPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALH 600

Query: 467 ADSDL------PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
             SD+      PP L     L+D L +      +  KA  +   + E G+ P+   Y 
Sbjct: 601 VFSDMKEKKNCPPNLVTYNTLMDGLYE----TGYIDKAATLWTSITEDGLEPDIISYN 654



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/484 (21%), Positives = 214/484 (44%), Gaps = 50/484 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RS   P V  ++ ++     +G+   V  ++++D +VK      DP     ++P+ A 
Sbjct: 219 MPRSRVQPDVVCYNALLGGCFKAGEFEKV--MRVWDKLVK------DPG----ARPNLAT 266

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+     G+ K+  +++++M     +PDV+TY ++I    R+        V   I+
Sbjct: 267 YNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEII 326

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSENEG 179
           + G+ +    + SLV  +   G ++ A      A   G R+    +R  ++      + G
Sbjct: 327 KTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRN----LRTYNIMIKGLFDSG 382

Query: 180 DDDDDDEVFEKL------LPNSINPSSEPPLLPK--------TFAPNSRI---------Y 216
             D+  E+++ L      +P+++   +    L +        T    +R+         Y
Sbjct: 383 MVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSY 442

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           ++++ G  N GR+ D V++   M   + +   P+   Y  ++S   +      A ++ ++
Sbjct: 443 SSMINGLCNVGRLVDAVKVYEKM---DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSK 499

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL-- 334
           M   G     ITYN L+ G C+  +  +A  + REM ++    PD+ +Y  LI G     
Sbjct: 500 MADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENG-FTPDITTYGSLIRGLFSDK 558

Query: 335 -IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            IDD   AL+ + ++  +G+    + +  L+     + +   A  VF +M        ++
Sbjct: 559 KIDD---ALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNL 615

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L++G    G +++A  +   + E+G  P++ +Y +   G+    +  E + L  E
Sbjct: 616 VTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDE 675

Query: 454 IKER 457
           +  R
Sbjct: 676 VLSR 679



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 191/448 (42%), Gaps = 52/448 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M+ +   P V  +  ++  L  SGD DG   + +++  ++K           +    D A
Sbjct: 290 MVANNLQPDVITYGILIHGLCRSGDVDG---AARVYSEIIK-----------TGLVIDAA 335

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN+++      G+ ++  + +D    F    ++ TYN+MIK    +      + + + +
Sbjct: 336 MYNSLVKGFCQAGRVQEAWKFWDSAG-FAGLRNLRTYNIMIKGLFDSGMVDEAIELWD-L 393

Query: 120 LEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           LE  +  C+    TF +L+      G    A TI +  R   +       +LD+  YSS 
Sbjct: 394 LEKDVA-CIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGK-------QLDVFSYSSM 445

Query: 177 -----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                N G   D  +V+EK+  +   P             NS IY  L+ G+    R SD
Sbjct: 446 INGLCNVGRLVDAVKVYEKMDKDGCKP-------------NSHIYNALISGFCQVYRTSD 492

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            VR+   M    DN   P  +TY T++  L KA     A  V  EM   G   +  TY  
Sbjct: 493 AVRIYSKM---ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGS 549

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-A 350
           L++G     +ID A  + +++     ++ DV+ +NILI G         AL  F++M+  
Sbjct: 550 LIRGLFSDKKIDDALSIWKQILYKG-LKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEK 608

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +   P  ++Y TLM     +     A  ++  +  D  ++ DI+++N  ++G C    + 
Sbjct: 609 KNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITED-GLEPDIISYNTRIKGLCSCDRIH 667

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGI 438
           E  ++++ +   G  P V T+  L   +
Sbjct: 668 EGIQLLDEVLSRGIIPTVITWNILVRAV 695



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 5/245 (2%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +  APN + Y  +++     G +   V +  ++RR++     PD +TY+T++  L K   
Sbjct: 152 RRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQ---VAPDRITYSTLMCGLAKQDR 208

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A  +L EM R  V  + + YN LL G  +  + +K   +  ++  D    P++ +YN
Sbjct: 209 LDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYN 268

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +++DG             +  M A  + P  I+Y  L+     S     A +V+ E+++ 
Sbjct: 269 VMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKT 328

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V +D   +N LV+G+C+ G V+EA +  +     G   N+ TY  +  G+  +    E
Sbjct: 329 GLV-IDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDE 386

Query: 447 ALLLW 451
           A+ LW
Sbjct: 387 AIELW 391



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 104/214 (48%), Gaps = 7/214 (3%)

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI-----TYNILLKGYCQQL 300
             +P   ++  ++ A V+A     A    A ++  G    RI     TYNI+L+  C + 
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSH-GAFGRRIAPNLQTYNIVLRSLCARG 172

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +D+A  L   +    ++ PD ++Y+ L+ G    D    AL   +EM    + P  + Y
Sbjct: 173 DLDRAVTLFDSLRR-RQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCY 231

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+     + + +   +V+D++++DP  + ++  +N++++G C+ G  +E   + ERM 
Sbjct: 232 NALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMV 291

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            N   P+V TYG L +G+  +     A  ++ EI
Sbjct: 292 ANNLQPDVITYGILIHGLCRSGDVDGAARVYSEI 325



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 41/204 (20%)

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI--------------LID 336
           ++L  + + +  D A +  R +       P + S+N L+D F+              L  
Sbjct: 88  VVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSH 147

Query: 337 DSAG-------------------------ALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
            + G                         A+T F+ +R R +AP +I+Y+TLM   A   
Sbjct: 148 GAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQD 207

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM-KENGFYPNVAT 430
           +   A  + DEM R  RV+ D+V +N L+ G  + G  E+  R+ +++ K+ G  PN+AT
Sbjct: 208 RLDHALDLLDEMPRS-RVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLAT 266

Query: 431 YGSLANGISLARKPGEALLLWKEI 454
           Y  + +G+    +  E   +W+ +
Sbjct: 267 YNVMLDGLCKFGRFKEVGEVWERM 290



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%)

Query: 45  FSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
           FSD     +  P+   YN +++     G   K   L+  + E G +PD+++YN  IK   
Sbjct: 602 FSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLC 661

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
              R H  + +L+ +L  GI   + T+  LV A + +G +++
Sbjct: 662 SCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQV 703


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 113/510 (22%), Positives = 219/510 (42%), Gaps = 78/510 (15%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G +P V +++++++ L   G    V E++ LFDV+ K            D+KP+ + YN 
Sbjct: 346 GCIPSVVSFNSILTCL---GKKRKVDEALTLFDVMKK------------DAKPNISTYNI 390

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++     G+  +  ++ D+M   G  P++L+ N+M+    +A++      + E   E G
Sbjct: 391 IIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERG 450

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
                 T+ SL+      G ++ A  + + M +   D   II    + ++     G  +D
Sbjct: 451 CNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMH--GRKED 508

Query: 184 DDEVFEKLLPNSINPSSEPPLLPK------------------------TFAPNSRIYTTL 219
             +++++++     P  +  LL                           F P+ R Y+ L
Sbjct: 509 GHKIYKEMIRRGGRP--DLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSIL 566

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQE---------------------DNA-----------S 247
           + G    G+  +T  +  AM +Q                      D A            
Sbjct: 567 IHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHV 626

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           HP   TY ++V  L K   +D A  +  E    G+  N I Y+ L+ G+ +  +ID+A  
Sbjct: 627 HPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYL 686

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +L EM     + P+V ++N L+D  +  ++   AL  F  M+    +P   +Y+ L+   
Sbjct: 687 ILEEMMKKG-LTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGL 745

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               +   A   + EM +   +  ++V +  ++ G  ++G + +A  + ER K NG  P+
Sbjct: 746 CRVQKYNKAFVFWQEMQKQGLIP-NVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPD 804

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKER 457
            A++ +L  G+S A +P EA  +++E + R
Sbjct: 805 SASFNALIEGMSNANRPMEAYQVFEETRLR 834



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/471 (22%), Positives = 202/471 (42%), Gaps = 49/471 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   ++N++L       K  + L LFD M +  AKP++ TYN++I +   A R +    +
Sbjct: 349 PSVVSFNSILTCLGKKRKVDEALTLFDVMKK-DAKPNISTYNIIIDMLCMAGRVNEAYKI 407

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRRDVCKIIRELDL 170
            + +   G+   + +   +V        LE A  I ++  E          C +I  L  
Sbjct: 408 RDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLG- 466

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                  +G  DD   +FEK+L    +              N  IYT+L++ +   GR  
Sbjct: 467 ------KKGKIDDAYRLFEKMLDAGHDA-------------NPIIYTSLIRNFFMHGRKE 507

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D  ++   M R+      PD     T +  + KAG +++ R +  +M   G   +  +Y+
Sbjct: 508 DGHKIYKEMIRR---GGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYS 564

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           IL+ G  +  Q  +   + + M+       D  +YN ++DG         A     EM+ 
Sbjct: 565 ILIHGLTKAGQARETSNIFQAMSQQG-FALDARAYNAVVDGLCKSGKVDKAYEVLEEMKV 623

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + + PT  +Y +++   A   +   A  +F+E  +   ++++++ ++ L++G+ ++G ++
Sbjct: 624 KHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEA-KSKGIELNVILYSSLIDGFGKVGRID 682

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGVNADS 469
           EA  I+E M + G  PNV T+ SL + +    +  EAL+ ++ +KE +C           
Sbjct: 683 EAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKC----------- 731

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  P+      L +   R   + KA      M++ G+ PN   Y  +
Sbjct: 732 ------SPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTM 776



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 140/286 (48%), Gaps = 22/286 (7%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ D  R++GAMR  +     P    YT ++ AL +A   +RA ++L +M  +G   +  
Sbjct: 156 RLEDAFRVIGAMRHLK---FRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVP 212

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            +  L++   ++ Q++ A  L+ E+     +EPD+V YN+ ID F        A  FF+E
Sbjct: 213 LFTTLVRALAREGQMEPALALVDEVKGSC-LEPDIVLYNVCIDCFGKAGSVDMAWKFFHE 271

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           ++A G+ P  +SYT+++     + +   A ++F +M  +  V     A+N ++ GY    
Sbjct: 272 LKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPC-AYAYNTMIMGYGSAE 330

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
             ++A +++ER++E G  P+V ++ S+   +   RK  EAL L+  +K+           
Sbjct: 331 RFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA--------- 381

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                   KP+    + + D+   A    +A +I   ME  G+ PN
Sbjct: 382 --------KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPN 419



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 67/348 (19%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+LP V+++S ++  L  +G     E+  +F  + ++               D  AYNAV
Sbjct: 555 GFLPDVRSYSILIHGLTKAGQ--ARETSNIFQAMSQQGFAL-----------DARAYNAV 601

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K  ++ ++M      P V TY  ++   A+  R      + E     GI
Sbjct: 602 VDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGI 661

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            L +  + SL+    GFG +            GR D   +I E                 
Sbjct: 662 ELNVILYSSLID---GFGKV------------GRIDEAYLILE----------------- 689

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              ++ K   PN   + +LM   +    + + +    +M+  + 
Sbjct: 690 ------------------EMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMK- 730

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+  TY+ +++ L +    ++A     EM + G+  N +TY  ++ G  +   I  
Sbjct: 731 --CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITD 788

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           A  L      +  I PD  S+N LI+G    +    A   F E R RG
Sbjct: 789 AYSLFERFKTNGGI-PDSASFNALIEGMSNANRPMEAYQVFEETRLRG 835


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 224/518 (43%), Gaps = 52/518 (10%)

Query: 37   VVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
            +++K++RK    +++S   P+   YN ++N     GK     Q+F++M +F   P+ +TY
Sbjct: 1075 LLLKKMRK----EMIS---PNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTY 1127

Query: 97   NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
            N +I            + +L+ +   G+ L   T+ +L+         E+A+ +++ MR 
Sbjct: 1128 NALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRV 1187

Query: 157  GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
                V  I   + L D   +N G  D+  ++   +  + +N             P+   Y
Sbjct: 1188 NDMVVGHIAYTV-LIDGLCKN-GMLDEAVQLVGNMYKDGVN-------------PDVITY 1232

Query: 217  TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            ++L+ G+   G +     ++  M R   +    + + Y+T++    + G++  A +V A 
Sbjct: 1233 SSLINGFCRVGNIKSAKEIICRMYR---SGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAV 1289

Query: 277  MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
            M   G  A+  T N+L+   C+  ++ +A++ L  M+    + P+ ++Y+ +I+G+  I 
Sbjct: 1290 MNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLV-PNSITYDCIINGYGSIG 1348

Query: 337  DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
            D   A +FF++M   G  P+  +Y +L+K          A K  + +   P   VD V +
Sbjct: 1349 DPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGA-VDSVMY 1407

Query: 397  NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW----- 451
            N L+   C+ G + EA  + ++M +N   P+  TY SL  G+    K   A+ L+     
Sbjct: 1408 NTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMG 1467

Query: 452  ------KEIKERCEV---------KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
                    +   C V         K      +  +     PD    +A+ D C R     
Sbjct: 1468 RGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 1527

Query: 497  KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
            KA +  + M   G+ PN   Y    + +H   F+ K A
Sbjct: 1528 KANDFFSTMRWWGVCPNLATYN---ILLHG--FSKKQA 1560



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 133/282 (47%), Gaps = 18/282 (6%)

Query: 239  MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
             R   D    P+  T+  +++ L   G++ +A  +L +M   G     +TYN LL  YC+
Sbjct: 972  FREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCK 1031

Query: 299  QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
            + +   A EL+  M     IE DV +YN+ ID       SA A     +MR   I+P ++
Sbjct: 1032 KGRYKAAIELIDYMICKG-IEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEV 1090

Query: 359  SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            +Y TL+  F    +  +A +VF+EM +   +  + V +N L+ G+C +G  EEA R+++ 
Sbjct: 1091 TYNTLINGFVKEGKIGVAAQVFNEMSKFD-LSPNCVTYNALIGGHCHVGDFEEALRLLDH 1149

Query: 419  MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
            M+  G   N  TYG+L NG+       E   L K + ER  V        +D+       
Sbjct: 1150 MEAAGLRLNEVTYGTLLNGLC----KHEKFELAKRLLERMRV--------NDMVVGHIAY 1197

Query: 479  EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              L+D L     +     +A+++V  M + G+ P+   Y  +
Sbjct: 1198 TVLIDGLC----KNGMLDEAVQLVGNMYKDGVNPDVITYSSL 1235



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 180/440 (40%), Gaps = 65/440 (14%)

Query: 55   KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
            KP     N +L +     + +    LF +M + G  P+V T+N++I  LC   + K    
Sbjct: 946  KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKK-AG 1004

Query: 114  FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
             +L+++ E G    + T+ +L+  Y   G  + A  ++  M      +CK I        
Sbjct: 1005 NLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYM------ICKGI-------- 1050

Query: 174  SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK-----TFAPNSRIYTTLMKGYMNEGR 228
                E D    +   + L  N  + S++  LL K       +PN   Y TL+ G++ EG+
Sbjct: 1051 ----EADVCTYNVFIDNLCTN--HRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGK 1104

Query: 229  VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
            +    ++   M + + +   P+ VTY  ++      G  + A ++L  M   G+  N +T
Sbjct: 1105 IGVAAQVFNEMSKFDLS---PNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVT 1161

Query: 289  YNILLKGYCQQLQIDKAKELLRE------------------------MADDA-------- 316
            Y  LL G C+  + + AK LL                          M D+A        
Sbjct: 1162 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 1221

Query: 317  --KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
               + PDV++Y+ LI+GF  + +   A      M   G+   KI Y+TL+  F       
Sbjct: 1222 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 1281

Query: 375  LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
             A KV+  M  +     D    N+LV   CR G + EA++ +  M   G  PN  TY  +
Sbjct: 1282 EAMKVYAVMNCNGH-GADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 1340

Query: 435  ANGISLARKPGEALLLWKEI 454
             NG      P  A   + ++
Sbjct: 1341 INGYGSIGDPLNAFSFFDDM 1360



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 138/314 (43%), Gaps = 21/314 (6%)

Query: 207  KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
            K   PN   +  L+ G   EG +     +L   ++ E+N   P  VTY T+++   K G 
Sbjct: 978  KGICPNVGTFNILINGLCVEGNLKKAGNLL---KQMEENGFVPTIVTYNTLLNWYCKKGR 1034

Query: 267  MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
               A +++  M   G+ A+  TYN+ +   C   +  KA  LL++M  +  I P+ V+YN
Sbjct: 1035 YKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEM-ISPNEVTYN 1093

Query: 327  ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
             LI+GF+       A   FNEM    ++P  ++Y  L+         + A ++ D M   
Sbjct: 1094 TLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHM-EA 1152

Query: 387  PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
              ++++ V +  L+ G C+    E AKR++ERM+ N        Y  L +G+       E
Sbjct: 1153 AGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDE 1212

Query: 447  ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
            A+ L   +       K+GVN          PD     +L +   R    + A EI+  M 
Sbjct: 1213 AVQLVGNM------YKDGVN----------PDVITYSSLINGFCRVGNIKSAKEIICRMY 1256

Query: 507  EHGIPPNKTKYKKI 520
              G+  NK  Y  +
Sbjct: 1257 RSGLVLNKIIYSTL 1270



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 193/493 (39%), Gaps = 44/493 (8%)

Query: 51   VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
            V+D      AY  +++     G   + +QL   M++ G  PDV+TY+ +I    R     
Sbjct: 1187 VNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIK 1246

Query: 111  LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD----VCKIIR 166
                ++ R+   G+ L    + +L+  +   G++  A  +   M           C ++ 
Sbjct: 1247 SAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLV 1306

Query: 167  ELDLEDYSSENEGDDDDDDEVFEKLLPNSIN--------PSSEPPLLPKTF--------- 209
                 D     E +          L+PNSI          S   PL   +F         
Sbjct: 1307 SSLCRD-GKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 1365

Query: 210  APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
             P+   Y +L+KG    G + +  + L    R        D V Y T+++   K+G++  
Sbjct: 1366 HPSFFTYGSLLKGLCKGGNLVEAKKFL---NRLHYIPGAVDSVMYNTLLAETCKSGNLHE 1422

Query: 270  ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            A  +  +M +  V  +  TY+ LL G C++ +   A  L         + P+ V Y  L+
Sbjct: 1423 AVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLV 1482

Query: 330  DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            DG         A  FF EM  +G  P  +++  ++ + +   Q   AN  F  M R   V
Sbjct: 1483 DGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTM-RWWGV 1541

Query: 390  KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL- 448
              ++  +N+L+ G+ +   +     +   M   G +P+  T+ SL  G+S +  P   + 
Sbjct: 1542 CPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVK 1601

Query: 449  LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            LL K I        EG  A          D+   + L +    +   RKA ++V  M   
Sbjct: 1602 LLGKMI-------MEGTLA----------DQFTFNILINKYSESGKMRKAFDLVNFMNTL 1644

Query: 509  GIPPNKTKYKKIY 521
            G+ P++  Y  I+
Sbjct: 1645 GVFPDRDTYNHIF 1657



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/464 (20%), Positives = 179/464 (38%), Gaps = 109/464 (23%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
            P++  Y+ ++N   ++G P      FD M + G  P   TY  ++K LC   +      F
Sbjct: 1332 PNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKF 1391

Query: 115  VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             L R+  +   +    + +L+A                       + CK           
Sbjct: 1392 -LNRLHYIPGAVDSVMYNTLLA-----------------------ETCK----------- 1416

Query: 175  SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                G+  +   +F+K++ N++              P+S  Y++L+ G   +G+    V 
Sbjct: 1417 ---SGNLHEAVALFDKMVQNNV-------------LPDSYTYSSLLTGLCRKGKAVTAVC 1460

Query: 235  MLG-AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            + G AM R       P+HV YT +V  L KAG    A     EM + G   + + +N ++
Sbjct: 1461 LFGTAMGR---GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAII 1517

Query: 294  KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
                ++ Q+ KA +    M     + P++ +YNIL+ GF         L+ ++ M   GI
Sbjct: 1518 DSCSRRGQMMKANDFFSTMRWWG-VCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGI 1576

Query: 354  APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
             P K+++ +L+   + S  P L  K+  +M+ +  +  D   +N+L+  Y   G + +A 
Sbjct: 1577 FPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTL-ADQFTFNILINKYSESGKMRKAF 1635

Query: 414  RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
             ++  M   G +P+  TY  + N                           G+N  S    
Sbjct: 1636 DLVNFMNTLGVFPDRDTYNHIFN---------------------------GLNKKSA--- 1665

Query: 474  PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                                 FR++  ++  M E+G+ P   +Y
Sbjct: 1666 ---------------------FRESTVVLHEMLENGVIPKHAQY 1688



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 114/552 (20%), Positives = 210/552 (38%), Gaps = 117/552 (21%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M R G +P+   +  +++   + GD  P+ +   FD ++K               P    
Sbjct: 1325 MSRIGLVPNSITYDCIINGYGSIGD--PLNAFSFFDDMIK-----------CGQHPSFFT 1371

Query: 61   YNAVLNA-C--ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
            Y ++L   C   NL + KKFL   +++H      D + YN ++    ++   H  V + +
Sbjct: 1372 YGSLLKGLCKGGNLVEAKKFL---NRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFD 1428

Query: 118  RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSE 176
            ++++  +     T+ SL+      G    A  +   AM  G      ++    ++  S  
Sbjct: 1429 KMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLS-- 1486

Query: 177  NEGDDDDDDEVFEKLL-----PNS------INPSSEPPLLPKT-----------FAPNSR 214
              G        FE+++     P++      I+  S    + K              PN  
Sbjct: 1487 KAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLA 1546

Query: 215  IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
             Y  L+ G+  +  +   + +   M R+      PD +T+ +++  L K+G  D   ++L
Sbjct: 1547 TYNILLHGFSKKQALLRYLSLYSTMMRE---GIFPDKLTFHSLILGLSKSGIPDLGVKLL 1603

Query: 275  AEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL-------------------------- 308
             +M   G  A++ T+NIL+  Y +  ++ KA +L                          
Sbjct: 1604 GKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKK 1663

Query: 309  ---------LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
                     L EM ++  I P    Y  LI+G   + D  GA    +EM A G    +++
Sbjct: 1664 SAFRESTVVLHEMLENGVI-PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVA 1722

Query: 360  YTTLMKAFALSSQPKLANKVFDEML-------------------RDPRV----------- 389
             + +++      + + A  V D ML                   RD ++           
Sbjct: 1723 ESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVME 1782

Query: 390  ----KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
                K+D+VA+N+L+ G C  G    A  + E M+     PN+ TY  L + IS A    
Sbjct: 1783 LCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLI 1842

Query: 446  EALLLWKEIKER 457
            +   L  +++ER
Sbjct: 1843 QGEKLLTDLQER 1854


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 126/239 (52%), Gaps = 2/239 (0%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y T++      G       +L AM  +   A  P+ V+YT ++ AL      D+A  +L 
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAVGLLR 139

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M   GV A+ +TY  L++G C   ++DKA EL+ EM +   IEP+VV Y+ L+ G+   
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG-IEPNVVVYSSLLQGYCKS 198

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                    F EM  +GI P  + YT L+ +     + K A+ V D M+R   ++ ++V 
Sbjct: 199 GRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRG-LEPNVVT 257

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +N+L+   C+ G V+EA  ++++M E G  P+V TY +L  G+S   +  EA+ L +E+
Sbjct: 258 YNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEM 316



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 5/211 (2%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA---NRITYNILLKGYCQQLQIDKAK 306
           D V+Y TV++AL + G  DRA  +L  M+    PA   N ++Y +L++  C   + D+A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            LLR M   A +  DVV+Y  LI G     +   A+    EM   GI P  + Y++L++ 
Sbjct: 136 GLLRSM-RSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQG 194

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
           +  S + +   KVF EM  +  ++ D+V +  L++  C++G  ++A  +++ M   G  P
Sbjct: 195 YCKSGRWEDVGKVFVEM-SEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKER 457
           NV TY  L N +       EA+ + K++ E+
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 37/209 (17%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  YT LM+    + R    V +L +MR     A   D VTY T++  L  A  +D+A
Sbjct: 113 PNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRA---DVVTYGTLIRGLCDAAEVDKA 169

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------- 316
            +++ EM   G+  N + Y+ LL+GYC+  + +   ++  EM++                
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDS 229

Query: 317 --------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                                +EP+VV+YN+LI+          A+    +M  +G+AP 
Sbjct: 230 LCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLR 385
            ++Y TL+K  +   +   A  + +EM+R
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMVR 318



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 22/201 (10%)

Query: 321 DVVSYNILIDGFIL--IDDSAGALTFFNEMRAR-GIAPTKISYTTLMKAFALSSQPKLAN 377
           D VSYN ++         D AGAL     +       P  +SYT LM+A     +   A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +   M R   V+ D+V +  L+ G C    V++A  ++  M E+G  PNV  Y SL  G
Sbjct: 136 GLLRSM-RSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQG 194

Query: 438 ISLARKPGEALLLWKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
                K G     W+++ K   E+ ++G+          +PD  +   L D   +    +
Sbjct: 195 YC---KSGR----WEDVGKVFVEMSEKGI----------EPDVVMYTGLIDSLCKVGKAK 237

Query: 497 KALEIVACMEEHGIPPNKTKY 517
           KA  ++  M   G+ PN   Y
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTY 258



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 101/258 (39%), Gaps = 53/258 (20%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+  +Y  ++ A     +  + + L   M   G + DV+TY  +I+    A+     V 
Sbjct: 112 RPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           ++  + E GI   +  + SL+  Y   G  E              DV K+  E+      
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWE--------------DVGKVFVEMS----- 212

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                           K   P+  +YT L+      G+      
Sbjct: 213 -------------------------------EKGIEPDVVMYTGLIDSLCKVGKAKKAHG 241

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  M R+      P+ VTY  +++ + K GS+  A  VL +M+  GV  + +TYN L+K
Sbjct: 242 VMDMMVRR---GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 298

Query: 295 GYCQQLQIDKAKELLREM 312
           G    L++D+A  LL EM
Sbjct: 299 GLSDVLEMDEAMWLLEEM 316



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P+V  +S+++     SG          ++ V K   + S+  I    +PD   
Sbjct: 176 MCESGIEPNVVVYSSLLQGYCKSGR---------WEDVGKVFVEMSEKGI----EPDVVM 222

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++++   +GK KK   + D M   G +P+V+TYNV+I  +C   S K   + VL+++
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKE-AIGVLKKM 281

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
            E G+   + T+ +L+       +++ A  +++ M  G
Sbjct: 282 SEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG 319


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 164/366 (44%), Gaps = 34/366 (9%)

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
           +LQL D     G  P+   +NV+++   R         V + +   G+   + +F ++++
Sbjct: 104 YLQLLDA----GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 159

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG-----DDDDDDEVFEKL 191
                GDL+ AET+ + M E            D+  Y +  +G       +D   VFEK+
Sbjct: 160 GMCRAGDLDGAETLHRRMSEAGVTP-------DVYTYGALIQGLCRVGRIEDARGVFEKM 212

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
               + P             N+ ++T L+  +  +G   D   ML   R   +    PD 
Sbjct: 213 CGRGMKP-------------NAVVFTILIDAHCKKG---DAETMLELHREMRERGVRPDA 256

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VTY  +V+ L +A  +  A  ++ EM   G+  + +TY  L+ GYC++ ++D A E+ + 
Sbjct: 257 VTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQN 316

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M  +  +  D V+Y  LI G      SA A     EM   G+ P   +YT ++ AF    
Sbjct: 317 MVAEG-VGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKG 375

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
             K   ++  EM    R K  +V +N+++ G+C++G ++ A  ++  M   G  P+  TY
Sbjct: 376 DVKTGLRLLKEMQNKGR-KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITY 434

Query: 432 GSLANG 437
             L +G
Sbjct: 435 NILLDG 440



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 139/317 (43%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL     P ++++  LM+  +  G ++    +   M   +        V++ T++S + +
Sbjct: 107 LLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEM---QSRGVRRTVVSFNTMISGMCR 163

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A  +   M+  GV  +  TY  L++G C+  +I+ A+ +  +M     ++P+ V
Sbjct: 164 AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRG-MKPNAV 222

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            + ILID      D+   L    EMR RG+ P  ++Y  ++     +   K A+ +  EM
Sbjct: 223 VFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEM 282

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R   ++ D V +  L++GYC+   ++ A  I + M   G   +  TY +L +G+S A +
Sbjct: 283 -RSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 341

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +A  +  E+ E                  L+PD      + D   R    +  L ++ 
Sbjct: 342 SADAERVLGEMME----------------AGLEPDNTTYTMVIDAFCRKGDVKTGLRLLK 385

Query: 504 CMEEHGIPPNKTKYKKI 520
            M+  G  P    Y  I
Sbjct: 386 EMQNKGRKPGVVTYNVI 402



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 114/260 (43%), Gaps = 30/260 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   +  +++A    G  +  L+L  +M E G +PD +TYN ++    RA        
Sbjct: 218 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 277

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDY 173
           ++  +   G+     T+ +L+  Y    +L++A  I Q M  EG          LD   Y
Sbjct: 278 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGV--------GLDEVTY 329

Query: 174 SS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           ++        G   D + V  +++   + P             ++  YT ++  +  +G 
Sbjct: 330 TALISGLSKAGRSADAERVLGEMMEAGLEP-------------DNTTYTMVIDAFCRKGD 376

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V   +R+L  M   ++    P  VTY  +++   K G M  A  +L  M  IGV  + IT
Sbjct: 377 VKTGLRLLKEM---QNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDIT 433

Query: 289 YNILLKGYCQQLQIDKAKEL 308
           YNILL G+C+  ++   +EL
Sbjct: 434 YNILLDGHCKHGKVTDIEEL 453



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 17/180 (9%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A  F+ ++   G+ P    +  LM+      +   A  VFDEM +   V+  +V++N ++
Sbjct: 100 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEM-QSRGVRRTVVSFNTMI 158

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
            G CR G ++ A+ +  RM E G  P+V TYG+L  G+    +  +A  +++++  R   
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGR--- 215

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                         +KP+  +   L D   +       LE+   M E G+ P+   Y  I
Sbjct: 216 -------------GMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAI 262



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 46/99 (46%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   Y  V++A    G  K  L+L  +M   G KP V+TYNV++    +  +      
Sbjct: 358 EPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADM 417

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQA 153
           +L  ++ +G++    T+  L+  +   G +   E +  A
Sbjct: 418 LLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSA 456


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 162/329 (49%), Gaps = 23/329 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+     P+   YTTL+     +        ++  +   E+    PD + +  +++A  +
Sbjct: 98  LIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLV---EEKQMKPDSIFFNALINAFAE 154

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           +G+M+ A++V+ +M   G+  +  TYN L+KGY    + D++ +LL  M+ +  ++P++ 
Sbjct: 155 SGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLK 214

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN+LI     +++ + A     +M A G+ P  +++ T+  A+A + +   A  +  EM
Sbjct: 215 TYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEM 274

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLAR 442
            R+  +K +     +++ GYCR G V+EA R + RMK+ G  PN+    SL NG + +  
Sbjct: 275 QRNS-LKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMD 333

Query: 443 KPG--EALLLWKEIKERCEVKKEG--VNADSD--------------LPPPLKPDEELLDA 484
           + G  E L L +E + R +V      +NA S               L   +KPD      
Sbjct: 334 RDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSI 393

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPN 513
           LA   VRA    KA E++  M + G+ PN
Sbjct: 394 LAKGYVRAQEMEKAEEMLTVMTKSGVHPN 422



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 213/454 (46%), Gaps = 39/454 (8%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLERILE 121
           V+N     GKP++ + +F  + E G +P + TY  +  L A  ++K+   +  ++  + E
Sbjct: 78  VMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTL--LNALTTQKYFKPIHSIVSLVEE 135

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
             +      F +L+ A+   G++E A+ +VQ M+E             ++ Y     G  
Sbjct: 136 KQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGI--AGKP 193

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           D+  ++ + +       S+E  +      PN + Y  L++       +S+   ++  M  
Sbjct: 194 DESMKLLDLM-------STEGNV-----KPNLKTYNMLIRALCKMENISEAWNVVYKMTA 241

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
              +   PD VT+ T+ +A  + G   +A  ++ EM R  +  N  T  I++ GYC++ +
Sbjct: 242 ---SGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGK 298

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + +A   +  M  D  ++P+++  N L++GF+ + D  G       M    I P  I+Y+
Sbjct: 299 VQEALRFVYRM-KDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYS 357

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           T+M A++ +   +   ++++ ML+   VK D  A+++L +GY R   +E+A+ ++  M +
Sbjct: 358 TIMNAWSQAGFLEKCKEIYNNMLKSG-VKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTK 416

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
           +G +PNV  + ++ +G     +   A+ ++ ++ E              + P LK  E L
Sbjct: 417 SGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGE------------FGVSPNLKTFETL 464

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +   A+    A    KA  ++  MEE  + P K+
Sbjct: 465 IWGYAE----AKQPWKAEGMLQIMEEFHVQPKKS 494



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 102/459 (22%), Positives = 198/459 (43%), Gaps = 75/459 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G+ P +  ++T+++ L       P+ S+      V  V +          KPD+  
Sbjct: 98  LIEGGHQPSLATYTTLLNALTTQKYFKPIHSI------VSLVEE-------KQMKPDSIF 144

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI- 119
           +NA++NA A  G  +   ++  +M E G KP   TYN +IK    A +    + +L+ + 
Sbjct: 145 FNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMS 204

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            E  +   + T+  L+ A     ++  A  +V  M                   +S  + 
Sbjct: 205 TEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMT------------------ASGMQP 246

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLP---KTFAPNSRIYTTLMKGYMNEGRVSDTVRM- 235
           D    + +      N     +E  +L     +  PN R  T ++ GY  EG+V + +R  
Sbjct: 247 DVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFV 306

Query: 236 -----LG--------------------------AMRRQEDNASHPDHVTYTTVVSALVKA 264
                LG                           ++  E+    PD +TY+T+++A  +A
Sbjct: 307 YRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQA 366

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G +++ +++   M + GV  +   Y+IL KGY +  +++KA+E+L  M     + P+VV 
Sbjct: 367 GFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSG-VHPNVVI 425

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN---KVFD 381
           +  +I G+  +     A+  F++M   G++P   ++ TL+  +A + QP  A    ++ +
Sbjct: 426 FTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIME 485

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           E    P+ K  I+   ++ E +   G  E AK ++  +K
Sbjct: 486 EFHVQPK-KSTIL---LVAEAWRFAGFKERAKTLLRTVK 520



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 118/259 (45%), Gaps = 17/259 (6%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           T V++ L+K+G    A  +   +   G   +  TY  LL     Q        ++  + +
Sbjct: 76  TKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIV-SLVE 134

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           + +++PD + +N LI+ F    +   A     +M+  G+ P+  +Y TL+K + ++ +P 
Sbjct: 135 EKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPD 194

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            + K+ D M  +  VK ++  +NML+   C+M  + EA  ++ +M  +G  P+V T+ ++
Sbjct: 195 ESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTI 254

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
           A   +   K  +A  +  E++                   LKP+E     +     R   
Sbjct: 255 ATAYAQNGKTAQAEAMILEMQRN----------------SLKPNERTCTIIISGYCREGK 298

Query: 495 FRKALEIVACMEEHGIPPN 513
            ++AL  V  M++ G+ PN
Sbjct: 299 VQEALRFVYRMKDLGMQPN 317


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 203/461 (44%), Gaps = 48/461 (10%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR--KHLLVFVLE 117
            YNA++ ACA     +K L L  +M + G + D + Y+++I+   R+++    +L+ + +
Sbjct: 170 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYK 229

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-----QAMREGRRDVCKIIRELDLED 172
            I    + L +     ++  +   GD   A  ++       +      +  II  L    
Sbjct: 230 EIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISAL---- 285

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
               + G   + + +FE+L  + I P              +R Y  L+KGY+  G + D 
Sbjct: 286 ---ADSGRTLEAEALFEELRQSGIKP-------------RTRAYNALLKGYVKTGPLKDA 329

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             M+  M   E     PD  TY+ ++ A V AG  + AR VL EM    V  N   ++ L
Sbjct: 330 ESMVSEM---EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRL 386

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L G+  + +  K  ++L+EM     ++PD   YN++ID F   +    A+T F+ M + G
Sbjct: 387 LAGFRDRGEWQKTFQVLKEM-KSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 445

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P ++++ TL+       +  +A ++F+ M R   +      +N+++  Y      ++ 
Sbjct: 446 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPC-ATTYNIMINSYGDQERWDDM 504

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
           KR++ +MK  G  PNV T+ +L +    + +  +A+   +E+K                 
Sbjct: 505 KRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKS---------------- 548

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
             LKP   + +AL +   +     +A+     M   G+ P+
Sbjct: 549 VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPS 589



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 204/514 (39%), Gaps = 47/514 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + GY      +S V+  L  S         K+  V++ R+ K  + D +   + D   
Sbjct: 194 MRQDGYQSDFVNYSLVIQSLTRSN--------KIDSVMLLRLYKEIERDKL---ELDVQL 242

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            N ++   A  G P K LQL       G      T   +I   A + R      + E + 
Sbjct: 243 VNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELR 302

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI      + +L+  YV  G L+ AE++V  M   +R V        L   +  N G 
Sbjct: 303 QSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEME--KRGVSPDEHTYSLLIDAYVNAGR 360

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +    V +++    +              PNS +++ L+ G+ + G    T ++L  M+
Sbjct: 361 WESARIVLKEMEAGDVQ-------------PNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 407

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD   Y  V+    K   +D A      M   G+  +R+T+N L+  +C+  
Sbjct: 408 ---SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHG 464

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +   A+E+   M     + P   +YNI+I+ +   +          +M+++GI P  +++
Sbjct: 465 RHIVAEEMFEAMERRGCL-PCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTH 523

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           TTL+  +  S +   A +  +EM +   +K     +N L+  Y + GL E+A      M 
Sbjct: 524 TTLVDVYGKSGRFNDAIECLEEM-KSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT 582

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
            +G  P++    SL N     R+  EA  + + +KE       GV          KPD  
Sbjct: 583 SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKE------NGV----------KPDVV 626

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
               L    +R   F+K   +   M   G  P++
Sbjct: 627 TYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDR 660



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 19/320 (5%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D +P++  ++ +L    + G+ +K  Q+  +M   G KPD   YNV+I    + +     
Sbjct: 375 DVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHA 434

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
           +   +R+L  GI     T+ +L+  +   G   +AE + +AM       C     + +  
Sbjct: 435 MTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINS 494

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           Y  +   DD       ++LL           +  +   PN   +TTL+  Y   GR +D 
Sbjct: 495 YGDQERWDD------MKRLLGK---------MKSQGILPNVVTHTTLVDVYGKSGRFNDA 539

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +  L  M+        P    Y  +++A  + G  ++A      MT  G+  + +  N L
Sbjct: 540 IECLEEMK---SVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSL 596

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +  + +  +  +A  +L+ M ++  ++PDVV+Y  L+   I +D        + EM   G
Sbjct: 597 INAFGEDRRDAEAFAVLQYMKENG-VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSG 655

Query: 353 IAPTKISYTTLMKAFALSSQ 372
             P + + + L  A     Q
Sbjct: 656 CKPDRKARSMLRSALRYMKQ 675



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 114/278 (41%), Gaps = 55/278 (19%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK--ELL 309
           +TY  ++ A  +   +++A  ++A+M + G  ++ + Y+++++   +  +ID      L 
Sbjct: 169 LTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLY 228

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           +E+  D K+E DV   N +I GF    D + AL      +A G++    +  +++ A A 
Sbjct: 229 KEIERD-KLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALAD 287

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           S +   A  +F+E LR   +K    A+N L++GY + G +++A+ ++  M++ G      
Sbjct: 288 SGRTLEAEALFEE-LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG------ 340

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
                                                        + PDE     L D  
Sbjct: 341 ---------------------------------------------VSPDEHTYSLLIDAY 355

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           V A  +  A  ++  ME   + PN   + ++      R
Sbjct: 356 VNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDR 393


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 200/467 (42%), Gaps = 71/467 (15%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++    +G   K L +F++  E G  P V+TY  +I L A+  +    + V + + 
Sbjct: 454 YHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEME 513

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   M T+  L+  +                             L L+D+++     
Sbjct: 514 HAGIKHNMKTYSMLINGF-----------------------------LKLKDWANAFA-- 542

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 +FE L+ + I P             +  +Y  ++  +   G++   V  +  M+
Sbjct: 543 ------IFEDLIKDGIKP-------------DVVLYNNIITAFCGMGKMDRAVCTVKEMQ 583

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q      P   T+  ++    + G M +A  V   M   G      TYN L+ G  ++ 
Sbjct: 584 KQRHK---PTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKR 640

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++KA+++L EM   A + P+  +Y  ++ G+  + D+  A T+F ++R  G+     +Y
Sbjct: 641 KMEKAEQILDEMTL-AGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTY 699

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S + + A  V  EM     +  +   +N+L++G+ R G + EA  ++++MK
Sbjct: 700 EALLKACCKSGRMQSALAVTKEM-SAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMK 758

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  P++ TY S  N  S   K G+     K I+E   +K  GV          KP+ +
Sbjct: 759 REGVQPDIHTYTSFINACS---KAGDMQRATKTIEE---MKSVGV----------KPNVK 802

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
               L +   RA+   KAL     M+  G+ P++  Y  +   + SR
Sbjct: 803 TYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSR 849



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 203/490 (41%), Gaps = 37/490 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    Y  ++N     G   +  + F++M   G +P    Y  +I   A        + 
Sbjct: 308 KPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALS 367

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            + ++ E GI + + T+  LV+ +   G+ E A+   Q  +E    +  II    +  Y 
Sbjct: 368 CVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYC 427

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                D        E L+        + P+          IY T+M GY     V D  +
Sbjct: 428 QRCNMDKA------EALVREMEEEGIDAPI---------DIYHTMMDGYT---MVGDEDK 469

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
            L    R ++   +P  +TY  +++   K G + +A +V  EM   G+  N  TY++L+ 
Sbjct: 470 CLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLIN 529

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+ +      A  +  ++  D  I+PDVV YN +I  F  +     A+    EM+ +   
Sbjct: 530 GFLKLKDWANAFAIFEDLIKDG-IKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHK 588

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT  ++  ++  FA   + K A  VFD M+R       +  +N L+ G      +E+A++
Sbjct: 589 PTTRTFMPIIHGFARKGEMKKALDVFD-MMRMSGCIPTVHTYNALILGLVEKRKMEKAEQ 647

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           I++ M   G  PN  TY ++ +G +     G+A   + ++++      EG          
Sbjct: 648 ILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRD------EG---------- 691

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           L+ D    +AL   C ++   + AL +   M    IP N   Y  I ++  +R      A
Sbjct: 692 LQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIY-NILIDGWARRGDIWEA 750

Query: 535 SQARQDRRRE 544
           +   Q  +RE
Sbjct: 751 ADLMQQMKRE 760



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 143/338 (42%), Gaps = 59/338 (17%)

Query: 49  DIVSDS-KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107
           D++ D  KPD   YN ++ A   +GK  + +    +M +   KP   T+  +I   AR  
Sbjct: 546 DLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKG 605

Query: 108 --RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII 165
             +K L VF + R+   G    + T+ +L+   V    +E AE              +I+
Sbjct: 606 EMKKALDVFDMMRM--SGCIPTVHTYNALILGLVEKRKMEKAE--------------QIL 649

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
            E+ L   S                                    PN   YTT+M GY +
Sbjct: 650 DEMTLAGVS------------------------------------PNEHTYTTIMHGYAS 673

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            G   DT +      +  D     D  TY  ++ A  K+G M  A  V  EM+   +P N
Sbjct: 674 LG---DTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRN 730

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
              YNIL+ G+ ++  I +A +L+++M  +  ++PD+ +Y   I+      D   A    
Sbjct: 731 TFIYNILIDGWARRGDIWEAADLMQQMKREG-VQPDIHTYTSFINACSKAGDMQRATKTI 789

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            EM++ G+ P   +YTTL+  +A +S P+ A   F+EM
Sbjct: 790 EEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEM 827



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 107/268 (39%), Gaps = 43/268 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG +P V  ++ ++         G VE  K+     ++  +  D   ++   P+   
Sbjct: 617 MRMSGCIPTVHTYNALIL--------GLVEKRKM-----EKAEQILDEMTLAGVSPNEHT 663

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++  A+LG   K    F ++ + G + DV TY  ++K C ++ R    + V + + 
Sbjct: 664 YTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMS 723

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSS---- 175
              I      +  L+  +   GD+ E A+ + Q  REG +         D+  Y+S    
Sbjct: 724 AQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQP--------DIHTYTSFINA 775

Query: 176 -ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               GD     +  E++    +              PN + YTTL+ G+    R S   +
Sbjct: 776 CSKAGDMQRATKTIEEMKSVGVK-------------PNVKTYTTLINGW---ARASLPEK 819

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALV 262
            L      + +   PD   Y  ++++L+
Sbjct: 820 ALSCFEEMKLSGLKPDRAVYHCLMTSLL 847


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 214/514 (41%), Gaps = 87/514 (16%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G +P V A++ +++ L   G    VE ++++F+            ++  D+ P+   YN 
Sbjct: 365 GSIPSVIAYNCILTCL---GKKRRVEEALRIFE------------EMKRDAVPNVPTYNI 409

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++     GK    L++ D M   G  P+VLT N+MI    +A +      + E + +  
Sbjct: 410 LIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKV 469

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
            T    TF SL+    G G                                    G  DD
Sbjct: 470 CTPNAVTFSSLID---GLGKC----------------------------------GRVDD 492

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
              ++EK+L                  P + +YT+L++ +   GR  D  ++   M    
Sbjct: 493 AYSLYEKMLDCG-------------HVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH-- 537

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                PD     T +  + KAG  ++ R +  E+   G   +  +Y+IL+ G  +    +
Sbjct: 538 -TGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLAN 596

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +  EL   M +   +  D  +YN +IDGF        A     EM+ +G  PT ++Y ++
Sbjct: 597 ETYELFYAMKEQGCV-LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 655

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +   A   +   A  +F+E  +   +K+++V ++ L++G+ ++G ++EA  I+E + + G
Sbjct: 656 IDGLAKIDRLDEAYMLFEEA-KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKG 714

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PNV T+  L + +  A +  EAL+ ++ +K              DL  P  P++    
Sbjct: 715 LTPNVYTWNCLLDALVKAEEINEALICFQSMK--------------DLKCP--PNQITYS 758

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            L +   R   F KA      M++ G+ PN   Y
Sbjct: 759 ILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITY 792



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 112/530 (21%), Positives = 219/530 (41%), Gaps = 83/530 (15%)

Query: 29  VESVKL---FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85
           V+S KL   FD++ + +RKF         +P  +AY  ++ A + + +P   L LF QM 
Sbjct: 171 VKSRKLREAFDII-QTMRKFK-------FRPAFSAYTILIGALSEVREPDPMLILFHQMQ 222

Query: 86  EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI----LEMGITL---CM---------- 128
           E G + +V  +  +I++ AR  R    + +L+ +    L+  I L   C+          
Sbjct: 223 ELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVD 282

Query: 129 ------------------TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
                              T+ S++        L+ A  + + + + R+  C       +
Sbjct: 283 MSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMI 342

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             Y S  + D+         LL       S P ++          Y  ++     + RV 
Sbjct: 343 MGYGSAGKFDEA------YGLLERQKAKGSIPSVIA---------YNCILTCLGKKRRVE 387

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +R+   M+R     + P+  TY  ++  L + G ++ A ++  +M R G+  N +T N
Sbjct: 388 EALRIFEEMKRD----AVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVN 443

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           I++   C+  ++++A  +   M DD    P+ V+++ LIDG         A + + +M  
Sbjct: 444 IMIDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD 502

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G  P  I YT+L+++F    + +  +K++ EM+       D+   N  ++   + G  E
Sbjct: 503 CGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG-CSPDLTLINTYMDCVFKAGETE 561

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           + + +   +  +GF P+  +Y  L +G+  A    E   L+  +KE+  V          
Sbjct: 562 KGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCV---------- 611

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  D    +A+ D   ++    KA +++  M+  G PP    Y  +
Sbjct: 612 ------LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 655



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 146/305 (47%), Gaps = 22/305 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P+S I   L+   +   ++ +   ++  MR+ +     P    YT ++ AL +    D
Sbjct: 156 FGPSSNISIELVANCVKSRKLREAFDIIQTMRKFK---FRPAFSAYTILIGALSEVREPD 212

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
               +  +M  +G   N   +  L++ + ++ ++D A  LL EM  ++ ++ D+V YN+ 
Sbjct: 213 PMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS-LDADIVLYNVC 271

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ID F        +  FF+EM++ G+ P  ++YT+++     +++   A ++F+++ ++ +
Sbjct: 272 IDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRK 331

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V     A+N ++ GY   G  +EA  ++ER K  G  P+V  Y  +   +   R+  EAL
Sbjct: 332 VPC-AYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEAL 390

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            +++E+      K++ V           P+    + L D+  R      ALEI   ME  
Sbjct: 391 RIFEEM------KRDAV-----------PNVPTYNILIDMLCREGKLNAALEIRDDMERA 433

Query: 509 GIPPN 513
           G+ PN
Sbjct: 434 GLFPN 438



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 141/363 (38%), Gaps = 67/363 (18%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P  +++S ++  L  +G     E+ +LF  + ++               DT AYNAV
Sbjct: 574 GFIPDARSYSILIHGLVKAGLAN--ETYELFYAMKEQ-----------GCVLDTHAYNAV 620

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K  QL ++M   G  P V+TY  +I   A+  R      + E     GI
Sbjct: 621 IDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGI 680

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            L +  + SL+    GFG +            GR D   +I E                 
Sbjct: 681 KLNVVVYSSLID---GFGKV------------GRIDEAYLIME----------------- 708

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              L+ K   PN   +  L+   +    +++ +    +M+   D
Sbjct: 709 ------------------ELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMK---D 747

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+ +TY+ +++ L +    ++A     EM ++G+  N ITY  ++ G  +   I +
Sbjct: 748 LKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILE 807

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
           A  L      +  I PD  SYN +I+G    + +  A   F E R +G      +   L+
Sbjct: 808 ASGLFSRFKANGGI-PDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLL 866

Query: 365 KAF 367
            A 
Sbjct: 867 DAL 869


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 203/483 (42%), Gaps = 64/483 (13%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
            G +P V  +++++  L +   +   E+  LF+ + K           +  +P+  +Y+ 
Sbjct: 138 GGCVPDVVTFNSLLKGLCSG--ERMSEAFVLFEYMAK-----------AGCEPNVISYST 184

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +L+     G+  +  +L+++M E    PD++ Y   +    +A+R         +++  G
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAET--IVQAMREGRRD-VCKIIRELDLEDYSSENEGD 180
                  F +++      G  E A+   I    R G  D  CK   E+   ++    E  
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELF 304

Query: 181 DDDDDEVFE-KLLPN---------SINPSSEPPLLPK----------------------- 207
           +     V + K LP+         S+     PP L                         
Sbjct: 305 NTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNE 364

Query: 208 ----TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
                 +P+   Y+ L+ G    G++     +L  M ++      PD  T  ++++AL K
Sbjct: 365 MANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE---GVFPDSFTDASILNALSK 421

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A   L  M   G   + +TYN LL G C+  +ID+A   L +M   AK  PDV 
Sbjct: 422 AGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVA-AKCTPDVF 480

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           SY I+I        +AGA   F EM  RG+ P  + Y +L+   A +    LA     E+
Sbjct: 481 SYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLAL----EL 536

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           L+    K D V   M+V+G C+ G  E+A  ++ERM + GF  +  TY ++  G+   RK
Sbjct: 537 LKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGL---RK 593

Query: 444 PGE 446
            G+
Sbjct: 594 LGK 596



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 5/233 (2%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           YT + +   + G++S  VR+   + RQ+         TY   + AL KA +   A +   
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQK--GYQHSVFTYNCFLDALAKANAGQLAYEKFQ 62

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           +M R G P +  TY+I+L+G C+  ++DKAKELL ++ +   ++ +V++Y+++IDG    
Sbjct: 63  QMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESG-VKLNVITYSVVIDGCCKA 121

Query: 336 DDSAGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                AL  F  M A  G  P  +++ +L+K      +   A  +F+ M +    + +++
Sbjct: 122 SRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAK-AGCEPNVI 180

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           +++ L++G C+ G ++EA R+ E M E    P++  Y S   G+  A +  EA
Sbjct: 181 SYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEA 233



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 64/323 (19%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  TY+ V+  L KAG +D+A+++L ++   GV  N ITY++++ G C+  ++D A E+
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEI 130

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
            + M+      PDVV++N L+ G    +  + A   F  M   G  P  ISY+TL+    
Sbjct: 131 FKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLC 190

Query: 369 LSSQPKLANKVFDEMLRDPRV----------------------------------KVDIV 394
            + +   A ++++EM+    V                                  K D V
Sbjct: 191 KAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAV 250

Query: 395 AW-----------------NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           A+                 N ++E  CR G+++EA +  E M      P+   + +L + 
Sbjct: 251 AFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHA 310

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
           +  +++  + +LL++ +K   E            PP L+    ++D L     +A    +
Sbjct: 311 VCKSKRLPDGVLLFQRMKSMKEFY---------CPPNLETYNIMVDNLC----KAKQLDE 357

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           A E+V  M  +G+ P+   Y  +
Sbjct: 358 AQELVNEMANYGLSPDVVTYSAL 380



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 114/537 (21%), Positives = 214/537 (39%), Gaps = 92/537 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+ VL      G+  K  +L  Q+ E G K +V+TY+V+I  C +ASR    + +
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEI 130

Query: 116 LERILEMGITLC-MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            + +   G  +  + TF SL+        +  A  + + M +   +   +I    L D  
Sbjct: 131 FKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEP-NVISYSTLLDGL 189

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
            +  G  D+   ++E+             ++ K+  P+   YT+ + G     RV++   
Sbjct: 190 CK-AGRLDEACRLWEE-------------MVEKSCVPDLVAYTSFVTGLCKANRVAEACD 235

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR-QVLAEMTRIGV----------- 282
                R+     S  D V ++TV+  L K G  + A+ Q++  + R G+           
Sbjct: 236 ---CCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEM 292

Query: 283 -----PANRITYNILLKGYCQQLQI----------------------------------- 302
                P +   +N L+   C+  ++                                   
Sbjct: 293 ISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKA 352

Query: 303 ---DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
              D+A+EL+ EMA+   + PDVV+Y+ L+DG   +     A     EM   G+ P   +
Sbjct: 353 KQLDEAQELVNEMANYG-LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFT 411

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
             +++ A + + +   A     E ++      D+V +N L++G C+ G ++EA   + +M
Sbjct: 412 DASILNALSKAGKVDYALSHL-ETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKM 470

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EGV--NADS 469
                 P+V +Y  +   +  + +   A  +++E+ +R  +          +G+  N   
Sbjct: 471 VAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLE 530

Query: 470 DLPPPL------KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           DL   L      KPD  +   + D   +A     A E+V  M + G P +   Y  +
Sbjct: 531 DLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINV 587



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 103/481 (21%), Positives = 200/481 (41%), Gaps = 56/481 (11%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           Y  V     +LGK    ++LFD +  + G +  V TYN  +   A+A+   L     +++
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
              G      T+  ++      G+L+ A+ ++  +RE    +  I   + ++     +  
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASR- 123

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             DD  E+F+ +                   P+   + +L+KG  +  R+S+   +   M
Sbjct: 124 -VDDALEIFKTMSAGG------------GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYM 170

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            +       P+ ++Y+T++  L KAG +D A ++  EM       + + Y   + G C+ 
Sbjct: 171 AKA---GCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA 227

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA------------------GA 341
            ++ +A +  R+M      + D V+++ +I G +     A                   A
Sbjct: 228 NRVAEACDCCRKMVTKGS-KADAVAFSTVI-GILCKKGHAEEAQNQMIEHLCRSGMLDEA 285

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPRVKVDIVAWNML 399
              F EM +R   P+   + TL+ A   S +      +F  M  +++     ++  +N++
Sbjct: 286 CKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIM 345

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           V+  C+   ++EA+ ++  M   G  P+V TY +L +G+    K   A  L +E+     
Sbjct: 346 VDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM----- 400

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
             KEGV  DS        D  +L+AL+    +A     AL  +  M+  G  P+   Y  
Sbjct: 401 -SKEGVFPDS------FTDASILNALS----KAGKVDYALSHLETMKARGSTPDLVTYNT 449

Query: 520 I 520
           +
Sbjct: 450 L 450



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 108/288 (37%), Gaps = 34/288 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V  +S +V  L   G           D     + + S   +  DS  D + 
Sbjct: 365 MANYGLSPDVVTYSALVDGLCKLGK---------LDRACDLLEEMSKEGVFPDSFTDAS- 414

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              +LNA +  GK    L   + M   G+ PD++TYN ++    +A R    +  L +++
Sbjct: 415 ---ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMV 471

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
               T  + ++  ++ A    G    A  I Q M   +R V       D   Y S     
Sbjct: 472 AAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV--KRGVLP-----DTVLYHS----- 519

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 + + L  N +   +   L      P+  ++  ++ G    G+  D   ++    
Sbjct: 520 ------LLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVV---E 570

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           R  D     D  TY  VV  L K G +D+ARQ++ + +       R++
Sbjct: 571 RMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASETHTSVERLS 618


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 180/401 (44%), Gaps = 25/401 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           ++  +NAV++   + G+  K +++FD M + G  PDV +Y++++    +        ++L
Sbjct: 282 NSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYML 341

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +   GIT  + ++ SL+      G +E+A  + + +++       I+  + L      
Sbjct: 342 VEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQH 401

Query: 177 NEGD---DDDDDEVFEKLLPNSINPSSE-----------------PPLLPKTFAPNSRIY 216
            + +   D  +D V    +P++ N SS                    ++     PN    
Sbjct: 402 LDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTC 461

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T L+ G+ NEG + +    L  +R+       P+  TY  +++ L K    +    + A+
Sbjct: 462 TILVHGFSNEGLIGEAFLFLDKVRQ---FGVVPNLCTYRVIINGLCKVNKPNDVWGIFAD 518

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M + G   + + Y+I++ G+ + L + +A  L  +M D+   +P++ +Y  LI+G    D
Sbjct: 519 MIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGT-KPNIFTYTSLINGLCHDD 577

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
                +T F  M   G+ P +I YT+L+  +   S  K A ++F EM     +  D   +
Sbjct: 578 KLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREM-ETEGLSADSFVY 636

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
             L+ G+ ++  ++ A+  +E M   G  P V TY  L  G
Sbjct: 637 TCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIG 677



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 149/317 (47%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L  + +  NS  +  ++ G+ ++G+V   V +   M++       PD  +Y+ +V  L K
Sbjct: 274 LCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKK---CGFVPDVHSYSILVDGLCK 330

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +     +L EM R G+  N ++Y+ LL G C+  +++ A EL + + D    + D +
Sbjct: 331 QGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQG-FKHDHI 389

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            Y+I++ G     D       +N+M      P   +Y++L+ A+    Q K A +VF+ M
Sbjct: 390 VYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELM 449

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + D  +  ++V   +LV G+   GL+ EA   ++++++ G  PN+ TY  + NG+    K
Sbjct: 450 ICDG-ICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNK 508

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
           P +   ++ ++ +R  V                PD  L   + D  V+A   ++A  +  
Sbjct: 509 PNDVWGIFADMIKRGYV----------------PDTVLYSIIIDGFVKALDLQEAFRLYY 552

Query: 504 CMEEHGIPPNKTKYKKI 520
            M + G  PN   Y  +
Sbjct: 553 KMVDEGTKPNIFTYTSL 569



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/483 (21%), Positives = 201/483 (41%), Gaps = 42/483 (8%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKP--KKFLQLFDQMHEFGAKPDVLTY 96
           +  VR   D   +S   P+  +Y+ +++   +  K   ++  +L  +M   G +P+  TY
Sbjct: 192 IMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATY 251

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
              +    RA +       L+ + + G       F +++  +   G +  A  +   M++
Sbjct: 252 GTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKK 311

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEV--FEKLLPNSINPSSEPPLLPKTFAPNSR 214
                C  +   D+  YS   +G     D +  +  L+  + N             PN  
Sbjct: 312 -----CGFVP--DVHSYSILVDGLCKQGDVLTGYYMLVEMARN----------GITPNLV 354

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y++L+ G    GRV     +    +R +D     DH+ Y+ V+    +   ++    + 
Sbjct: 355 SYSSLLHGLCRAGRVELAFELF---KRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLW 411

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M       +   Y+ L+  YC+  Q+ +A E+   M  D  I P+VV+  IL+ GF  
Sbjct: 412 NDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDG-ICPNVVTCTILVHGFSN 470

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 A  F +++R  G+ P   +Y  ++      ++P     +F +M++   V  D V
Sbjct: 471 EGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVP-DTV 529

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            ++++++G+ +   ++EA R+  +M + G  PN+ TY SL NG+    K  E + L+K +
Sbjct: 530 LYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHM 589

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
                           +   L PD  L  +L     + +  + ALEI   ME  G+  + 
Sbjct: 590 ----------------IGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADS 633

Query: 515 TKY 517
             Y
Sbjct: 634 FVY 636



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 84/408 (20%), Positives = 177/408 (43%), Gaps = 43/408 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G++P V ++S +V  L   GD      +  + ++V+  R    P++VS        
Sbjct: 309 MKKCGFVPDVHSYSILVDGLCKQGD-----VLTGYYMLVEMARNGITPNLVS-------- 355

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+++L+     G+ +   +LF ++ + G K D + Y++++  C +     +   +   ++
Sbjct: 356 YSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMV 415

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
                     + SL+ AY     L+ A  + + M  +G   +C  +    +  +   NEG
Sbjct: 416 HHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDG---ICPNVVTCTILVHGFSNEG 472

Query: 180 DDDDDDEVFEKL--------------LPNSINPSSEP--------PLLPKTFAPNSRIYT 217
              +     +K+              + N +   ++P         ++ + + P++ +Y+
Sbjct: 473 LIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYS 532

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            ++ G++    + +  R+   M    D  + P+  TYT++++ L     +     +   M
Sbjct: 533 IIIDGFVKALDLQEAFRLYYKM---VDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHM 589

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
              G+  +RI Y  L+  YC++  +  A E+ REM  +  +  D   Y  LI GF  +  
Sbjct: 590 IGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEG-LSADSFVYTCLIGGFSKVLA 648

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             GA  F  EM  +G+ PT ++YT L+  +      K A  +++ ML+
Sbjct: 649 MDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQ 696



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 151/387 (39%), Gaps = 57/387 (14%)

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNS-RIY 216
           + LD E+  S+    D+D  E F  ++  ++  SS       +F         P S R++
Sbjct: 33  KSLDDEEEPSQRSVGDEDRRERFHPVIARAVRTSSWGDARKISFRECVRLYGLPRSIRLF 92

Query: 217 TTLMKGYM----------------NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
             LM+ ++                + G     +  L  M       S      Y TV+  
Sbjct: 93  ALLMRSFLPRRIREVRCLIQSVVDHCGNAGPELFQLAPMLASNLGGSMTLPQVYATVIRV 152

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE- 319
            V+    + A     E  ++GV       N LLKG  +  QI      +R + DD KI  
Sbjct: 153 FVELSMFEDALVTYVEAKKVGVELQ--VCNFLLKGLVEGNQI----MYVRSLFDDMKISG 206

Query: 320 --PDVVSYNILID----GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
             P++ SY++L+     G  L  + A  L   +EM   G+ P   +Y T +     + Q 
Sbjct: 207 PSPNIYSYSVLMSMYTHGAKLCLEEAQEL--LSEMEVEGVRPNAATYGTYLYGLCRAKQV 264

Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
           K A   F +ML       +   +N ++ G+C  G V +A  + + MK+ GF P+V +Y  
Sbjct: 265 KSAWN-FLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSI 323

Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
           L +G+    K G+ L  +  + E          A + + P L     LL  L     RA 
Sbjct: 324 LVDGLC---KQGDVLTGYYMLVEM---------ARNGITPNLVSYSSLLHGLC----RAG 367

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKI 520
               A E+   +++ G   +   Y  +
Sbjct: 368 RVELAFELFKRLKDQGFKHDHIVYSIV 394


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 153/315 (48%), Gaps = 22/315 (6%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            PN+  Y  LM G   EG V D + +L   R    +   P  V Y TV+  L  A     
Sbjct: 74  TPNNVTYNVLMDGMCGEGDVDDALELL---RNLPSHGCKPSTVNYNTVLKGLCSAERWGD 130

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A +++ EM R   P N  T+N+++   C++  + +A +LL +M+       ++V+YN +I
Sbjct: 131 ADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG-CTANIVTYNAII 189

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           +G     +  GA+   ++M++ G  P  ++Y TL+K    +++   A ++ D M ++  +
Sbjct: 190 NGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCL 249

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             D V +N L+   C+ GL+ +A  + ++M + G  PN  TY ++ +G++ A K  +AL 
Sbjct: 250 P-DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALE 308

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           L+ E+  +      G N D           ++   LA+         +A++ V  +++ G
Sbjct: 309 LFNEMGHK------GFNPD-----------KIYQLLAECLNDDDTIEEAIQTVRKLQDSG 351

Query: 510 IPPNKTKYKKIYVEM 524
           I P+   Y  I + +
Sbjct: 352 ISPHTVLYNAILLGL 366



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 198/449 (44%), Gaps = 78/449 (17%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YN +++     G+ +  L + D M   G  PDV+TYN++++   +       + 
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 63

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------IIR 166
           +++ +   G T    T+  L+    G GD++ A   ++ +R      CK        +++
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDA---LELLRNLPSHGCKPSTVNYNTVLK 120

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
            L     S+E  GD D   E+  ++L  +  P+        TF  N  IY+   KG + +
Sbjct: 121 GL----CSAERWGDAD---ELVTEMLRENCPPNE------ATF--NVVIYSLCRKGLLQQ 165

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
                 +++L  M +    A   + VTY  +++ L +  ++D A  +L++M   G   + 
Sbjct: 166 A-----IQLLEKMSKHGCTA---NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDI 217

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-----LIDDSAGA 341
           +TYN LLKG C   +   A+EL+  M  +  + PD V++N LI GF+     ++D    A
Sbjct: 218 VTYNTLLKGLCSAARWVDAEELMDNMTQNGCL-PDNVTFNTLI-GFLCQKGLMVD----A 271

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------------------ 383
           +  F +M  +G  P  I+Y+T++   A +++   A ++F+EM                  
Sbjct: 272 IEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECL 331

Query: 384 ---------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                          L+D  +    V +N ++ G CR G  E A  I+  M  +G  P+ 
Sbjct: 332 NDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDD 391

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKER 457
            TY  L  G++      EA  L  ++  R
Sbjct: 392 LTYVILIEGLAYEGYLNEARELLIKLCSR 420



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 120/293 (40%), Gaps = 56/293 (19%)

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID------GF--- 332
           V  N  TYN L+   C++ Q+  A  +L +M       PDVV+YNIL++      G+   
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRG-CAPDVVTYNILLEATCKGRGYRQA 61

Query: 333 --------------------ILIDDSAG------ALTFFNEMRARGIAPTKISYTTLMKA 366
                               +L+D   G      AL     + + G  P+ ++Y T++K 
Sbjct: 62  MELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 121

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
              + +   A+++  EMLR+     +   +N+++   CR GL+++A +++E+M ++G   
Sbjct: 122 LCSAERWGDADELVTEMLRE-NCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA 180

Query: 427 NVATYGSLANGISLARKPGEALLLWKEIKER-CEVKKEGVNA------------------ 467
           N+ TY ++ NG+   R    A+ L  ++K   C+      N                   
Sbjct: 181 NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELM 240

Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D+       PD    + L     +      A+E+   M + G  PN   Y  I
Sbjct: 241 DNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTI 293



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 135/331 (40%), Gaps = 33/331 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR    P+   ++ V+  L   G         L    ++ + K S     ++       
Sbjct: 138 MLRENCPPNEATFNVVIYSLCRKG---------LLQQAIQLLEKMSKHGCTAN----IVT 184

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N           + L  +M  +G KPD++TYN ++K    A+R      +++ + 
Sbjct: 185 YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMT 244

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G      TF +L+      G +  A  + + M +       I     +   +   +  
Sbjct: 245 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATK-- 302

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D   E+F ++     NP               +IY  L +   ++  + + ++    +R
Sbjct: 303 LDQALELFNEMGHKGFNPD--------------KIYQLLAECLNDDDTIEEAIQ---TVR 345

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           + +D+   P  V Y  ++  L + G  + A  ++A M   G   + +TY IL++G   + 
Sbjct: 346 KLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEG 405

Query: 301 QIDKAKELLREMAD-DAKIEPDVVSYNILID 330
            +++A+ELL ++   D  +   + S  +L+D
Sbjct: 406 YLNEARELLIKLCSRDVLVNSLIKSEALLLD 436


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 113/483 (23%), Positives = 199/483 (41%), Gaps = 46/483 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  ++ A   +GK  + L+ F++M E G +P+V TY V+I    +  +    + +
Sbjct: 293 PDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEM 352

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +LE G+   +  F +L+  Y   G +E A  ++ +M+  +  VC   R  +      
Sbjct: 353 LSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNK--VCPNSRTYNELICGF 410

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +   D    +  K+  N +             +PN   Y TL+ G + + RV D+   
Sbjct: 411 CRKKSMDRAMALLNKMYENKL-------------SPNLVTYNTLIHG-LCKARVVDSAWR 456

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +  ++     PD  T+   +  L K G +++A QV   +      AN   Y  L+ G
Sbjct: 457 LHHLMIKDGFV--PDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDG 514

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+  +   A  L + M  +    P+ +++N+L+DG         A++  + M      P
Sbjct: 515 YCKAEKFSDAHLLFKRMLFEGCF-PNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKP 573

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T  +YT L++     S    AN   D+M+     + ++V +   ++ YCR G + EA+ +
Sbjct: 574 TVHTYTILIEEILRESDFDRANMFLDQMISSG-CQPNVVTYTAFIKAYCRQGRLLEAEEM 632

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCE--------------- 459
           + ++KE G   +   Y  L N      +   A  +L +     CE               
Sbjct: 633 VVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIF 692

Query: 460 --VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
               KEG+  D +    +  D   +  +AD  +    F K       M E G  PN   Y
Sbjct: 693 EKYNKEGMGLDLN-STNISVDNANIWKIADFEIITMLFEK-------MVEQGCVPNVNTY 744

Query: 518 KKI 520
            K+
Sbjct: 745 SKL 747



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 143/318 (44%), Gaps = 23/318 (7%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  TYT+++    K   +  A +V   M + G   N ++Y  L+ G+C+  +ID+A EL 
Sbjct: 224 DSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELF 283

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M +D    PDV +Y +L+  F  +     AL FF EM   GI P   +YT L+  F  
Sbjct: 284 FQMKEDGCF-PDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCK 342

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             +     ++   ML    V   +V +N L++GYC+ G++E+A  +++ MK N   PN  
Sbjct: 343 VGKMDEGMEMLSTMLEKGLVS-SVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSR 401

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY  L  G    +    A+ L  ++ E            + L P L     L+  L    
Sbjct: 402 TYNELICGFCRKKSMDRAMALLNKMYE------------NKLSPNLVTYNTLIHGLC--- 446

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAA 549
            +A     A  +   M + G  P++  +   +++   +M       QA Q     +++ A
Sbjct: 447 -KARVVDSAWRLHHLMIKDGFVPDQRTFCA-FIDCLCKM---GKVEQAHQVFESLKEKHA 501

Query: 550 EAFKF-WLGLPNSYYGSE 566
           EA +F +  L + Y  +E
Sbjct: 502 EANEFLYTALIDGYCKAE 519



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 117/551 (21%), Positives = 220/551 (39%), Gaps = 89/551 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRK--- 44
           M+ +G  P+V  ++ ++      G             + G V SV  F+ ++    K   
Sbjct: 321 MVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGM 380

Query: 45  FSDPDIVSDSK------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
             D   V DS       P++  YN ++          + + L ++M+E    P+++TYN 
Sbjct: 381 MEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNT 440

Query: 99  MIK-LC-AR----ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           +I  LC AR    A R H L      +++ G      TF + +      G +E A  + +
Sbjct: 441 LIHGLCKARVVDSAWRLHHL------MIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFE 494

Query: 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDD---DDEVFEKLLPNSINPSSEPPLLPKTF 209
           +++E   +  + +    ++ Y    +  D        +FE   PNSI             
Sbjct: 495 SLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSIT------------ 542

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
                 +  L+ G   EG+V D + ++  M + +   + P   TYT ++  +++    DR
Sbjct: 543 ------FNVLLDGLRKEGKVEDAMSLVDVMGKFD---AKPTVHTYTILIEEILRESDFDR 593

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A   L +M   G   N +TY   +K YC+Q ++ +A+E++ ++ ++  I  D   Y++L+
Sbjct: 594 ANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEG-ILLDSFIYDVLV 652

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           + +  I     A      M   G  P++ +Y+ L+K        K              +
Sbjct: 653 NAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNK------------EGM 700

Query: 390 KVDIVAWNMLVEG--YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            +D+ + N+ V+     ++   E    + E+M E G  PNV TY  L  G+        A
Sbjct: 701 GLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLA 760

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
             L+  +KE                  + P E + ++L   C +     +AL ++  M E
Sbjct: 761 FRLFNHMKE----------------SGISPSENIHNSLLSSCCKLGMHEEALRLLDSMME 804

Query: 508 HGIPPNKTKYK 518
           +    +   YK
Sbjct: 805 YNHLAHLESYK 815



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 182/402 (45%), Gaps = 35/402 (8%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N+++ +C +  + +  L L    HEF     V +YN +  + +R      L  + + +L 
Sbjct: 127 NSMIKSCVSSHEARFVLNLLTH-HEFSL--SVTSYNRLFMVLSRFGLIDELNCLFKDMLN 183

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG-- 179
            G+   + +F ++V A+   G++ +A+     +   +   C      D   Y+S   G  
Sbjct: 184 DGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLM--KFGFC-----CDSFTYTSLILGYC 236

Query: 180 ---DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRM 235
              +  D  +VFE              ++P+     + + YT L+ G+   G++ + + +
Sbjct: 237 KIHELGDAYKVFE--------------IMPQEGCLRNEVSYTNLIHGFCEVGKIDEALEL 282

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M+   ++   PD  TYT +V+A  + G    A +   EM   G+  N  TY +L+  
Sbjct: 283 FFQMK---EDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDY 339

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  ++D+  E+L  M +   +   VV +N LIDG+        A+   + M+   + P
Sbjct: 340 FCKVGKMDEGMEMLSTMLEKGLV-SSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCP 398

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              +Y  L+  F        A  + ++M  + ++  ++V +N L+ G C+  +V+ A R+
Sbjct: 399 NSRTYNELICGFCRKKSMDRAMALLNKMYEN-KLSPNLVTYNTLIHGLCKARVVDSAWRL 457

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              M ++GF P+  T+ +  + +    K  +A  +++ +KE+
Sbjct: 458 HHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEK 499



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 178/405 (43%), Gaps = 34/405 (8%)

Query: 49  DIVSDS-KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107
           D+++D  +P+  ++N ++NA   +G        F  + +FG   D  TY  +I    +  
Sbjct: 180 DMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIH 239

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
                  V E + + G      ++ +L+  +   G ++ A  +   M+E   D C     
Sbjct: 240 ELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKE---DGCFP--- 293

Query: 168 LDLEDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
            D+  Y+         G + +  + FE+++ N I              PN   YT L+  
Sbjct: 294 -DVPTYTVLVAAFCEVGKETEALKFFEEMVENGIE-------------PNVYTYTVLIDY 339

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           +   G++ + + ML  M  +   +S    V +  ++    K G M+ A  VL  M    V
Sbjct: 340 FCKVGKMDEGMEMLSTMLEKGLVSS---VVPFNALIDGYCKRGMMEDAICVLDSMKLNKV 396

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             N  TYN L+ G+C++  +D+A  LL +M ++ K+ P++V+YN LI G         A 
Sbjct: 397 CPNSRTYNELICGFCRKKSMDRAMALLNKMYEN-KLSPNLVTYNTLIHGLCKARVVDSAW 455

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
              + M   G  P + ++   +       + + A++VF E L++   + +   +  L++G
Sbjct: 456 RLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVF-ESLKEKHAEANEFLYTALIDG 514

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           YC+     +A  + +RM   G +PN  T+  L +G+   RK G+ 
Sbjct: 515 YCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGL---RKEGKV 556



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 132/285 (46%), Gaps = 22/285 (7%)

Query: 256 TVVSALVKAG-SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
            V ++++K+  S   AR VL  +T      +  +YN L     +   ID+   L ++M +
Sbjct: 124 NVRNSMIKSCVSSHEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLN 183

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           D  +EP+++S+N +++    I +   A  +F  +   G      +YT+L+  +    +  
Sbjct: 184 DG-VEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELG 242

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A KVF+ M ++  ++ + V++  L+ G+C +G ++EA  +  +MKE+G +P+V TY  L
Sbjct: 243 DAYKVFEIMPQEGCLRNE-VSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVL 301

Query: 435 ANGISLARKPGEALLLWKEIKER----------------CEVKK--EGVNADSD-LPPPL 475
                   K  EAL  ++E+ E                 C+V K  EG+   S  L   L
Sbjct: 302 VAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGL 361

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  +AL D   +      A+ ++  M+ + + PN   Y ++
Sbjct: 362 VSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNEL 406



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 166/411 (40%), Gaps = 50/411 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA---SRKHLL 112
           PD   + A ++    +GK ++  Q+F+ + E  A+ +   Y  +I    +A   S  HLL
Sbjct: 468 PDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLL 527

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
               +R+L  G      TF  L+      G +E A ++V  M  G+ D    +    +  
Sbjct: 528 ---FKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVM--GKFDAKPTVHTYTILI 582

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                E D D  +   ++++ +   P             N   YT  +K Y  +GR+ + 
Sbjct: 583 EEILRESDFDRANMFLDQMISSGCQP-------------NVVTYTAFIKAYCRQGRLLEA 629

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             M+  ++ +       D   Y  +V+A    G +D A  VL  M   G   +R TY+IL
Sbjct: 630 EEMVVKIKEE---GILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSIL 686

Query: 293 LKGYC---------------QQLQIDKAK----------ELLREMADDAKIEPDVVSYNI 327
           LK                    + +D A            +L E   +    P+V +Y+ 
Sbjct: 687 LKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSK 746

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI G   ++  + A   FN M+  GI+P++  + +L+ +       + A ++ D M+   
Sbjct: 747 LIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYN 806

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            +   + ++ +LV G    G  E+A+ I   +   G+  +   +  L +G+
Sbjct: 807 HL-AHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGL 856



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 36/348 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G  P+   ++ ++  L     +G VE ++ L DV+ K            D+KP   
Sbjct: 531 MLFEGCFPNSITFNVLLDGLR---KEGKVEDAMSLVDVMGK-----------FDAKPTVH 576

Query: 60  AYNAVLNAC---ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
            Y  ++      ++  +   FL   DQM   G +P+V+TY   IK   R  R      ++
Sbjct: 577 TYTILIEEILRESDFDRANMFL---DQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMV 633

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRRDVCKIIRELDLE 171
            +I E GI L    +  LV AY   G L+ A  ++  M +      R+    +++ L  E
Sbjct: 634 VKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFE 693

Query: 172 DYSSENEGDDDD------DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
            Y+ E  G D +      D+    K+    I       ++ +   PN   Y+ L+KG   
Sbjct: 694 KYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCK 753

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
              +S   R+   M+   ++   P    + +++S+  K G  + A ++L  M      A+
Sbjct: 754 VEHLSLAFRLFNHMK---ESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAH 810

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             +Y +L+ G  +Q   +KA+E+ R +        D V + +L+DG +
Sbjct: 811 LESYKLLVCGLFEQGNQEKAEEIFRSLL-SCGYNYDEVVWKVLLDGLV 857


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 21/310 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K   P   IYT L++G   E R+S+   M   MR   ++   P+  TY T++    K
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMR---NSGMLPNLYTYNTMMDGYCK 275

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              + +A ++  EM   G+  N +T+ IL+ G C+  ++  A++ L +MA    + P++ 
Sbjct: 276 IAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV-PNIF 334

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            YN LIDG+    + + AL+  +E+    I P   +Y+ L+K      + + A+ +  EM
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            +   +  + V +N L++GYC+ G +E+A  +  +M E G  PN+ T+ +L +G   A K
Sbjct: 395 KKKGFLP-NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
              A+ L+ E+                +   L PD     AL D   +    ++A  +  
Sbjct: 454 MEAAMGLYTEM----------------VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 504 CMEEHGIPPN 513
            M+E G+ PN
Sbjct: 498 EMQEAGLHPN 507



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 5/234 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +  +PN   Y TL+ G   +G      R+   M  ++     P  V YT ++  L  
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKK---IFPTVVIYTILIRGLCG 240

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +  A  +   M   G+  N  TYN ++ GYC+   + KA EL  EM  D  + P+VV
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLL-PNVV 299

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++ ILIDG    D+   A  F  +M + G+ P    Y  L+  +  +     A  +  E 
Sbjct: 300 TFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSE- 358

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +    +  D+  +++L++G C +  +EEA  +++ MK+ GF PN  TY +L +G
Sbjct: 359 IEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/479 (22%), Positives = 180/479 (37%), Gaps = 91/479 (18%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D  P   A N VL+     G+     +++  M   GA P+V+TY  +I  C R       
Sbjct: 153 DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR------------D 160
             + + ++E  I   +  +  L+    G   +  AE++ + MR                 
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG 272

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT------------ 208
            CKI       +   E  GD          LLPN +        L KT            
Sbjct: 273 YCKIAHVKKALELYXEMLGDG---------LLPNVVTFGILIDGLCKTDEMVSARKFLID 323

Query: 209 -----FAPNSRIYTTLMKGYMNEGRVSDTVRML--------------------------- 236
                  PN  +Y  L+ GY   G +S+ + +                            
Sbjct: 324 MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDR 383

Query: 237 -----GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
                G ++  +     P+ VTY T++    K G+M++A +V ++MT  G+  N IT++ 
Sbjct: 384 MEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GYC+  +++ A  L  EM     + PDVV+Y  LIDG     ++  A     EM+  
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVF----------------DEMLRDPRVKVDIVA 395
           G+ P   + + L+       +   A K+F                D  L  P    + V 
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSP----NHVM 558

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +  L++G C  G + +A +    M+ +G  P+V T   +  G   A    + ++L  +I
Sbjct: 559 YTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADI 617



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 128/284 (45%), Gaps = 23/284 (8%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           V+  LVK G  D   +V  +M   G   N +TY  L+ G C+Q    KA  L  EM +  
Sbjct: 164 VLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEK- 222

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           KI P VV Y ILI G       + A + F  MR  G+ P   +Y T+M  +   +  K A
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            +++ EML D  +  ++V + +L++G C+   +  A++ +  M   G  PN+  Y  L +
Sbjct: 283 LELYXEMLGDGLLP-NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLID 341

Query: 437 GISLARKPGEALLLWKEIKERCEVKKE------------GVN----ADSDLPPPLK---- 476
           G   A    EAL L  EI E+ E+  +            GV+    AD  L    K    
Sbjct: 342 GYCKAGNLSEALSLHSEI-EKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL 400

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           P+    + L D   +     KA+E+ + M E GI PN   +  +
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 105/482 (21%), Positives = 205/482 (42%), Gaps = 75/482 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR------------VRKFSDP 48
           M+  G  P+V  + T++      GD   +++ +LFD ++++            +R     
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGD--FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGE 241

Query: 49  DIVSDSK------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
             +S+++            P+   YN +++    +   KK L+L+ +M   G  P+V+T+
Sbjct: 242 SRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTF 301

Query: 97  NVMI-KLCAR----ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
            ++I  LC      ++RK L+      +   G+   +  +  L+  Y   G+L  A ++ 
Sbjct: 302 GILIDGLCKTDEMVSARKFLI-----DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 152 QAMREGRRDVCKIIREL--DLEDYSSENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
             + +          E+  D+  YS   +G    D  E  + LL           +  K 
Sbjct: 357 SEIEK---------HEILPDVFTYSILIKGLCGVDRMEEADGLLQE---------MKKKG 398

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F PN+  Y TL+ GY  EG +   + +   M    +    P+ +T++T++    KAG M+
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM---TEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +  EM   G+  + + Y  L+ G+ +     +A  L +EM  +A + P+V + + L
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM-QEAGLHPNVFTLSCL 514

Query: 329 IDGFILIDDSAGALTFF-------------NEMRARGIAPTKISYTTLMKAFALSSQPKL 375
           IDG       + A+  F             NE+     +P  + YT L++      +   
Sbjct: 515 IDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFK 574

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A+K F +M R   ++ D+    ++++G+ R   + +   +   + + G  PN + Y  LA
Sbjct: 575 ASKFFSDM-RCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLA 633

Query: 436 NG 437
            G
Sbjct: 634 KG 635



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 101/474 (21%), Positives = 182/474 (38%), Gaps = 60/474 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS--KPDT 58
           M  +G  P+V   S ++  L   G     +++KLF          S  + +  S   P+ 
Sbjct: 499 MQEAGLHPNVFTLSCLIDGLCKDGRIS--DAIKLFLAKTGTDTTGSKTNELDRSLCSPNH 556

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             Y A++      G+  K  + F  M   G +PDV T  V+I+   RA     ++ +   
Sbjct: 557 VMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQAD 616

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETI----VQAMRE------------GRRDVC 162
           IL+MGI    + ++ L   Y   G L+ A +     VQ +               R  +C
Sbjct: 617 ILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPWGSYTIRSRFQLC 676

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222
            +  + +         G       +   +L    +   +PP      +P+  +      G
Sbjct: 677 VVTEKKECHSSYLTAFG-------IHSFVLLWYFHTILKPP------SPHEILKKVPFIG 723

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              + R +  +++    R+ + +   PD VT T  +SA    G++D    + A +   G+
Sbjct: 724 QKGDQRPNKALQLF---RQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGL 780

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             +    N L+  Y +  +I  A+ L      D   + DV ++  +I G  L   +  AL
Sbjct: 781 DTDLCLNNSLINMYSKCGEIGTARRLF-----DGTQKKDVTTWTSMIVGHALHGQAEEAL 835

Query: 343 TFFNEM-----RARG-----------IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
             F EM     RAR            + P  +++  ++ A + +   +   + F  M  D
Sbjct: 836 QLFTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKED 895

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             ++  I  +  +V+  CR GL+ EA   I +M      PN   + +L    SL
Sbjct: 896 YSLRPRISHFGCMVDLLCRAGLLTEAYEFILKMP---VRPNAVVWRTLLGACSL 946



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 131/316 (41%), Gaps = 42/316 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+ ++     + + ++   L  +M + G  P+ +TYN +I    +       + V
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL--DLEDY 173
             ++ E GI   + TF +L+  Y   G +E A  +   M         +I+ L  D+  Y
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM---------VIKGLLPDVVAY 476

Query: 174 SSENEGD--DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           ++  +G   D +  E F               +      PN    + L+ G   +GR+SD
Sbjct: 477 TALIDGHFKDGNTKEAFRL----------HKEMQEAGLHPNVFTLSCLIDGLCKDGRISD 526

Query: 232 TVRMLGAMRRQEDNAS----------HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
            +++  A    +   S           P+HV YT ++  L   G + +A +  ++M   G
Sbjct: 527 AIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSG 586

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAK--IEPDVVSYNILIDGFILIDDSA 339
           +  +  T  ++++G+ + + +   ++++   AD  K  I P+   Y +L  G+       
Sbjct: 587 LRPDVFTCIVIIQGHFRAMHL---RDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLK 643

Query: 340 GALTFFNEMRARGIAP 355
            AL+F  E    G+ P
Sbjct: 644 SALSFCGE----GVQP 655


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 189/462 (40%), Gaps = 72/462 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L + A        L L  QM  FG  PDV T  ++I      +R       
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-----------DVCK 163
           L +IL++G     TTF +L+      G +  A  +   M  EG +            +CK
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 164 I------IRELDLEDYSSENEGDDDDDDEVFEKLLPN---------SINPSSEPPLLPKT 208
           +      IR L      S  +G+   +  VF  L+ +         + N  SE  ++ K 
Sbjct: 188 VGNTSAAIRLL-----RSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSE--MITKG 240

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +PN   Y +L+ G     ++ +   +   M    D+   PD  T  TVV AL K G + 
Sbjct: 241 ISPNIVTYNSLIHGLC---KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVA 297

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V+  M   GV  N +TYN L+ G+C + ++D A ++   M     +  +V+SYN L
Sbjct: 298 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV-ANVISYNTL 356

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G+  I     A+  F EM  + + P  ++Y TL+       + + A  +F EM+   +
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 389 V----------------------------------KVDIVAWNMLVEGYCRMGLVEEAKR 414
           +                                    DI  +  +++G CR G +E+A+ 
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           +   +   G  PNV TY  + +G+       EA  L+ E+ +
Sbjct: 477 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK 518



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/473 (20%), Positives = 186/473 (39%), Gaps = 71/473 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P    ++T++  L   G  G  E++ LFD ++               +P+   
Sbjct: 131 ILKLGHQPDATTFTTLIRGLCVEGKIG--EALHLFDKMIGE-----------GFQPNVVT 177

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +P+V+ ++ +I    +  +      +   ++
Sbjct: 178 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMI 237

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELD-LEDYSSEN 177
             GI+  + T+ SL+       + +   T++  M + +   DV  +   +D L       
Sbjct: 238 TKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVA 297

Query: 178 EGDDDDDDEVFEKLLPNSINPSS---------EPPLLPKTF--------APNSRIYTTLM 220
           E  D  D  +   + PN +  ++         E  +  K F          N   Y TL+
Sbjct: 298 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 357

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY     V   + +   M RQE     P+ VTY T++  L   G +  A  +  EM   
Sbjct: 358 NGYCKIQSVDKAMYLFEEMSRQELT---PNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 414

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM------------------------ADDA 316
           G   + +TY  L    C+   +DKA  LL+ +                         +DA
Sbjct: 415 GQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 474

Query: 317 K----------IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           +          ++P+V +YNI+I G       A A   F+EM   G +P   +Y  + + 
Sbjct: 475 RDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRG 534

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           F  +++     ++ +EML      VD+    +LV      GL +  K+I+ ++
Sbjct: 535 FLRNNEALRTIELLEEMLARG-FSVDVSTTTLLVGMLSDDGLDQSVKQILCKI 586



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 118/287 (41%), Gaps = 21/287 (7%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           ++ T  S  +   ++D A      M     P + + +N LL    +         L R+M
Sbjct: 37  SHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM 96

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            D   I PDV +  I+I+    ++    A +   ++   G  P   ++TTL++   +  +
Sbjct: 97  -DSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 155

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A  +FD+M+ +   + ++V +  L+ G C++G    A R++  M++    PNV  + 
Sbjct: 156 IGEALHLFDKMIGEG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFS 214

Query: 433 SLANGISLARKPGEALLLWKEIKER-------------------CEVKKEGVNADSDLPP 473
           +L + +   R+  EA  ++ E+  +                   CE K      +  +  
Sbjct: 215 TLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDS 274

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            + PD   L+ + D   +     +A ++V  M   G+ PN   Y  +
Sbjct: 275 KIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 321


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/457 (22%), Positives = 209/457 (45%), Gaps = 42/457 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V A++ +++ L   G  G  E+++ F+ + K            D+ P+ + YN +
Sbjct: 368 GCIPSVIAYNCILTCLGKKGRLG--EALRTFEEMKK------------DAAPNLSTYNVL 413

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G+ +   ++ D M E G  P+V+T N+MI    +A +      + E    M  
Sbjct: 414 IDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEG---MNH 470

Query: 125 TLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            +C     TF SL+      G ++ A  + + M +  +    ++    ++ +     G  
Sbjct: 471 KICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFF--KCGRK 528

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMR 240
           +D  ++F++++    +P  +  LL      N+ +      G   +GR + + ++  G + 
Sbjct: 529 EDGHKIFKEMIHRGCSP--DLRLL------NAYMDCVFKAGETGKGRALFEEIKSRGFI- 579

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD ++Y+ ++  LVKAG      ++   M   G   +   YN  + G+C+  
Sbjct: 580 --------PDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSG 631

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++KA +LL EM    + +P VV+Y  +IDG   ID    A   F E ++ G+    + Y
Sbjct: 632 KVNKAYQLLEEMKTKGR-QPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIY 690

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           ++L+  F    +   A  + +E+++   +  ++  WN L++   +   + EA    + MK
Sbjct: 691 SSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYTWNCLLDALVKAEEINEALVCFQNMK 749

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
                PN  TY  L NG+   RK  +A + W+E++++
Sbjct: 750 NLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQ 786



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/485 (20%), Positives = 206/485 (42%), Gaps = 37/485 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V   + ++ RL  +      E+  +F+ +  ++             PD   
Sbjct: 433 MKEAGLFPNVMTVNIMIDRLCKAKKLD--EACSIFEGMNHKI-----------CSPDEVT 479

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           + ++++     G+     +L++QM +    P+ + Y  +IK   +  RK     + + ++
Sbjct: 480 FCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMI 539

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  +    + +      G+      + + ++   R     +    +  +     G 
Sbjct: 540 HRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKS--RGFIPDVMSYSILIHGLVKAGF 597

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  E+F  +         E   +  T A     Y T + G+   G+V+   ++L  M+
Sbjct: 598 ARETYELFYAM--------KEQGCVLDTHA-----YNTFIDGFCKSGKVNKAYQLLEEMK 644

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P  VTY +V+  L K   +D A  +  E    G+  N + Y+ L+ G+ +  
Sbjct: 645 TK---GRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVG 701

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID+A  ++ E+     + P+V ++N L+D  +  ++   AL  F  M+     P  I+Y
Sbjct: 702 RIDEAYLIMEELMQKG-LTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITY 760

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           + L+       +   A   + EM +   +K + + +  ++ G  + G + EA  + ER K
Sbjct: 761 SILINGLCRVRKFNKAFVFWQEMQKQG-LKPNTITYTTMIAGLAKAGNIAEASSLFERFK 819

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CEVKKEGVNADSDLPPPLKPDE 479
            NG  P+ A+Y ++  G+S +R+  EA  +++E + + C +  +   A   L   L+ DE
Sbjct: 820 ANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIA---LLDALQKDE 876

Query: 480 ELLDA 484
            L  A
Sbjct: 877 CLEQA 881



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 125/248 (50%), Gaps = 14/248 (5%)

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
            ++TT+++ +  EGR+   + +L  M+    N  H D V Y   +    KAG +D A + 
Sbjct: 234 HLFTTVIRVFAREGRLDAALSLLDEMK---SNCLHADIVLYNVCIDCFGKAGKVDMAWKF 290

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             E+   G+  + +TY  ++   C+  ++D+A E+  +M  +  + P   +YN +I G+ 
Sbjct: 291 FHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNV-PCAYAYNTMIMGY- 348

Query: 334 LIDDSAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
               SAG    A +     +ARG  P+ I+Y  ++       +   A + F+EM +D   
Sbjct: 349 ---GSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-- 403

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             ++  +N+L++  C+ G VE A ++ + MKE G +PNV T   + + +  A+K  EA  
Sbjct: 404 APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACS 463

Query: 450 LWKEIKER 457
           +++ +  +
Sbjct: 464 IFEGMNHK 471



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/484 (19%), Positives = 203/484 (41%), Gaps = 46/484 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T     ++ +C    K ++   L   M +F  +P    Y  +I   +      +++ +
Sbjct: 161 PSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTL 220

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             ++ E+G  + +  F +++  +   G L+ A +++  M+        ++  + ++ +  
Sbjct: 221 FHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFG- 279

Query: 176 ENEGDDDDDDEVFEK-----LLPNSINPSSEPPLLPKTF-----------------APNS 213
              G  D   + F +     LLP+ +  +S   +L K                    P +
Sbjct: 280 -KAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCA 338

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y T++ GY + G+  +   +L    RQ+     P  + Y  +++ L K G +  A + 
Sbjct: 339 YAYNTMIMGYGSAGKFDEAYSLL---ERQKARGCIPSVIAYNCILTCLGKKGRLGEALRT 395

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM +   P N  TYN+L+   C+  +++ A ++ R+   +A + P+V++ NI+ID   
Sbjct: 396 FEEMKKDAAP-NLSTYNVLIDMLCKAGEVEAAFKV-RDAMKEAGLFPNVMTVNIMIDRLC 453

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A + F  M  +  +P ++++ +L+       +   A +++++ML   ++  + 
Sbjct: 454 KAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIP-NA 512

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +  L++ + + G  E+  +I + M   G  P++    +  + +  A + G+   L++E
Sbjct: 513 VVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEE 572

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           IK R                   PD      L    V+A F R+  E+   M+E G   +
Sbjct: 573 IKSR----------------GFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLD 616

Query: 514 KTKY 517
              Y
Sbjct: 617 THAY 620



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 141/305 (46%), Gaps = 22/305 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P+++    L+   +   ++ +   ++  MR+ +     P    YTT++ AL      D
Sbjct: 159 FGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFK---FRPAFSAYTTLIGALSSVQESD 215

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
               +  +M  +G   +   +  +++ + ++ ++D A  LL EM  +  +  D+V YN+ 
Sbjct: 216 IMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNC-LHADIVLYNVC 274

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ID F        A  FF+E+++ G+ P  ++YT+++      ++   A ++F++M ++  
Sbjct: 275 IDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRN 334

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V     A+N ++ GY   G  +EA  ++ER K  G  P+V  Y  +   +    + GEAL
Sbjct: 335 VPC-AYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEAL 393

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
             ++E+K+             D  P L     L+D L     +A     A ++   M+E 
Sbjct: 394 RTFEEMKK-------------DAAPNLSTYNVLIDMLC----KAGEVEAAFKVRDAMKEA 436

Query: 509 GIPPN 513
           G+ PN
Sbjct: 437 GLFPN 441



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 188/457 (41%), Gaps = 34/457 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M +  + P   A++T++         G + SV+  D+++    +  +       +     
Sbjct: 189 MRKFKFRPAFSAYTTLI---------GALSSVQESDIMLTLFHQMQELGY----EVSVHL 235

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  V+   A  G+    L L D+M       D++ YNV I    +A +  +       I 
Sbjct: 236 FTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIK 295

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     T+ S++        L+ A  I + M + R   C       +  Y S   G 
Sbjct: 296 SHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGS--AGK 353

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D+   + E+              +P   A N  I T L K    +GR+ + +R    M+
Sbjct: 354 FDEAYSLLER--------QKARGCIPSVIAYNC-ILTCLGK----KGRLGEALRTFEEMK 400

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +     + P+  TY  ++  L KAG ++ A +V   M   G+  N +T NI++   C+  
Sbjct: 401 KD----AAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAK 456

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+A  +   M +     PD V++  LIDG         A   + +M      P  + Y
Sbjct: 457 KLDEACSIFEGM-NHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVY 515

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T+L+K+F    + +  +K+F EM+       D+   N  ++   + G   + + + E +K
Sbjct: 516 TSLIKSFFKCGRKEDGHKIFKEMIHRG-CSPDLRLLNAYMDCVFKAGETGKGRALFEEIK 574

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             GF P+V +Y  L +G+  A    E   L+  +KE+
Sbjct: 575 SRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQ 611



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 124/273 (45%), Gaps = 9/273 (3%)

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMRRQE 243
           D+V + L   +  P  E  L     +P     T L+ G +   + V+  +       R+ 
Sbjct: 67  DDVCKILESGNWGPDVENALSLFVESPK----TDLVIGVLRRAKDVNQAISYFRWTERKT 122

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           D A  P+   Y +++  + K    D   Q+L EM+  G   +  T   L+    +  ++ 
Sbjct: 123 DQALCPE--AYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLR 180

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +  +L++ M    K  P   +Y  LI     + +S   LT F++M+  G   +   +TT+
Sbjct: 181 EGFDLIQCM-RKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTV 239

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           ++ FA   +   A  + DEM +   +  DIV +N+ ++ + + G V+ A +    +K +G
Sbjct: 240 IRVFAREGRLDAALSLLDEM-KSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHG 298

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             P+  TY S+   +    +  EA+ +++++++
Sbjct: 299 LLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQ 331


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 123/513 (23%), Positives = 221/513 (43%), Gaps = 63/513 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   AYN +L      GK  K L++F++M    A P++ TYN++I +  +A        V
Sbjct: 234 PSVVAYNCILTCLGKKGKTDKALRIFEEMKR-DAMPNLPTYNIIIGMLCKAGNVEAAFKV 292

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDL 170
            + + E G+   + T   ++        L+ A +I + M            C +I  L  
Sbjct: 293 RDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLG- 351

Query: 171 EDYSSENEGDDDDDDEVFEKLL-PNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                  +G  DD   ++E++L  + I              PN  +YT+L++ +    R 
Sbjct: 352 ------KQGRVDDAYRIYERMLDADQI--------------PNVVVYTSLIRNFFKCDRK 391

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D  +M   M R   +   PD +   T +  + KAG  ++ R +  E+   G   +  +Y
Sbjct: 392 EDGHKMYKEMMR---SGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSY 448

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           +IL+    +     +  EL   M D   +  D  +YN +IDGF        A     EM+
Sbjct: 449 SILIHSLVKAGFARETYELYYAMKDQGCV-LDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 507

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G  PT ++Y +++   A   +   A  +F+E  +   ++++ V ++ L++G+ ++G V
Sbjct: 508 TMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEA-KSNGIELNQVIYSSLIDGFGKVGRV 566

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGVNAD 468
           +EA  ++E M + G  PNV T+  L +G+  A +  EAL+ ++ +K+ +C          
Sbjct: 567 DEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKC---------- 616

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
                   P++     L +   +   F KA      M++ G+ PN       Y  M S +
Sbjct: 617 -------TPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTIT----YTAMISGL 665

Query: 529 FTSKHASQARQDRRRERKRAAEAFKFWLGLPNS 561
             S + +QA      ER RA+       G+P+S
Sbjct: 666 AKSGNVAQASS--LFERFRASG------GIPDS 690



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 201/457 (43%), Gaps = 42/457 (9%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V A++ +++ L   G     +++++F+            ++  D+ P+   YN +
Sbjct: 231 GCIPSVVAYNCILTCLGKKGKTD--KALRIFE------------EMKRDAMPNLPTYNII 276

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +      G  +   ++ D M E G  P+V T N+MI    +A +      + E    M  
Sbjct: 277 IGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFE---GMDY 333

Query: 125 TLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            +C     TF SL+      G ++ A  I + M +  +    ++    + ++   +  +D
Sbjct: 334 KVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKED 393

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-VSDTVRMLGAMR 240
                   K+    +     P L+      N+ +      G   +GR + + ++  G + 
Sbjct: 394 G------HKMYKEMMRSGCSPDLM----LLNTYMDCVFKAGETEKGRALFEEIKARGFL- 442

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                   PD  +Y+ ++ +LVKAG      ++   M   G   +   YN ++ G+C+  
Sbjct: 443 --------PDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSG 494

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++KA +LL EM       P VV+Y  ++DG   ID    A   F E ++ GI   ++ Y
Sbjct: 495 KVNKAYQLLEEMKTMGH-HPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIY 553

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           ++L+  F    +   A  V +EM++   +  ++  WN L++G  +   + EA    + MK
Sbjct: 554 SSLIDGFGKVGRVDEAYLVMEEMMQKG-LTPNVYTWNCLLDGLVKAEEINEALVCFQSMK 612

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +    PN  TY  L NG+   RK  +A + W+E++++
Sbjct: 613 DLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQ 649



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/420 (20%), Positives = 181/420 (43%), Gaps = 28/420 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   YN  ++    +GK     + F +M   G  PD +TY  M+ +  +A+R    V + 
Sbjct: 130 DIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIF 189

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E++ +     C   + +++  Y   G  + A ++++  R+  +     +   +       
Sbjct: 190 EQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLE--RQRAKGCIPSVVAYNCILTCLG 247

Query: 177 NEGDDDDDDEVFEKL----LPNSINPSSEPPLLPKT-----------------FAPNSRI 215
            +G  D    +FE++    +PN    +    +L K                    PN R 
Sbjct: 248 KKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRT 307

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
              ++       ++ +   +   M   +     PD  T+ +++  L K G +D A ++  
Sbjct: 308 INIMIDRLCKAQKLDEACSIFEGM---DYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYE 364

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
            M       N + Y  L++ + +  + +   ++ +EM       PD++  N  +D     
Sbjct: 365 RMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSG-CSPDLMLLNTYMDCVFKA 423

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            ++      F E++ARG  P   SY+ L+ +   +   +   +++  M +D    +D  A
Sbjct: 424 GETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAM-KDQGCVLDTRA 482

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N +++G+C+ G V +A +++E MK  G +P V TYGS+ +G++   +  EA +L++E K
Sbjct: 483 YNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 542



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 143/305 (46%), Gaps = 22/305 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P +     L+   +   ++ +   +L  MR  +     P    YTT++ AL + G  D
Sbjct: 22  FGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFK---FRPAFSAYTTLIGALSEVGESD 78

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           R   +  +M  +G   N      L++ + ++ ++D A  LL EM  +   + D+V YN+ 
Sbjct: 79  RMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNT-FDADIVLYNVC 137

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ID F  +     A  FF+EM+A G+ P  ++YT++M     +++   A ++F++M ++ +
Sbjct: 138 IDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQ 197

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V     A+N ++ GY   G  +EA  ++ER +  G  P+V  Y  +   +    K  +AL
Sbjct: 198 VPC-AYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKAL 256

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            +++E+K          +A  +LP          + +  +  +A     A ++   M+E 
Sbjct: 257 RIFEEMKR---------DAMPNLPT--------YNIIIGMLCKAGNVEAAFKVRDAMKEA 299

Query: 509 GIPPN 513
           G+ PN
Sbjct: 300 GLFPN 304



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/466 (19%), Positives = 194/466 (41%), Gaps = 37/466 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P  +AY  ++ A + +G+  + L LF+QM E G + +V     +I++ +R  R    + 
Sbjct: 58  RPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALS 117

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+ +        +  +   +  +   G +++A      M+        +     +    
Sbjct: 118 LLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLC 177

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             N    D+  E+FE++  N   P +               Y T++ GY + G+  +   
Sbjct: 178 KANR--LDEAVEIFEQMEQNRQVPCAYA-------------YNTMIMGYGSAGKFDEAYS 222

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L    RQ      P  V Y  +++ L K G  D+A ++  EM R  +P N  TYNI++ 
Sbjct: 223 LL---ERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMP-NLPTYNIIIG 278

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C+   ++ A + +R+   +A + P+V + NI+ID          A + F  M  +  +
Sbjct: 279 MLCKAGNVEAAFK-VRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCS 337

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   ++ +L+       +   A ++++ ML   ++  ++V +  L+  + +    E+  +
Sbjct: 338 PDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIP-NVVVYTSLIRNFFKCDRKEDGHK 396

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           + + M  +G  P++    +  + +  A +  +   L++EIK R                 
Sbjct: 397 MYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKAR----------------G 440

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             PD      L    V+A F R+  E+   M++ G   +   Y  +
Sbjct: 441 FLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTV 486



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/489 (18%), Positives = 190/489 (38%), Gaps = 101/489 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P+V+  + ++ RL  +      E+  +F+ +  +V             PD A 
Sbjct: 296 MKEAGLFPNVRTINIMIDRLCKA--QKLDEACSIFEGMDYKV-----------CSPDGAT 342

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           + ++++     G+     +++++M +    P+V+ Y  +I+   +  RK     + + ++
Sbjct: 343 FCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMM 402

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  +    + +      G+ E    + + ++   R      R   +  +S    G 
Sbjct: 403 RSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKA--RGFLPDTRSYSILIHSLVKAGF 460

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +  E++  +                    ++R Y T++ G+   G+V+   ++L  M+
Sbjct: 461 ARETYELYYAMKDQGC-------------VLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 507

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
                  HP  VTY +VV  L K   +D A  +  E    G+  N++ Y+ L+ G+ +  
Sbjct: 508 TM---GHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVG 564

Query: 301 QIDKAKELLREMAD----------------------------------DAKIEPDVVSYN 326
           ++D+A  ++ EM                                    D K  P+ ++Y 
Sbjct: 565 RVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYC 624

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILI+G   +     A  F+ EM+ +G+ P  I+YT ++   A S     A+ +F      
Sbjct: 625 ILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLF------ 678

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
                                         ER + +G  P+ A+Y ++  G+S+A +  +
Sbjct: 679 ------------------------------ERFRASGGIPDSASYNAMIEGLSIANRALD 708

Query: 447 ALLLWKEIK 455
           A  L++E +
Sbjct: 709 AYQLFEETR 717



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 2/200 (1%)

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           +V+  + D   Q+L EM+  G      T   L+    +  ++ +A +LL +M    K  P
Sbjct: 1   MVRTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLL-QMMRHFKFRP 59

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
              +Y  LI     + +S   L  FN+M+  G        TTL++ F+   +   A  + 
Sbjct: 60  AFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLL 119

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           DEM +      DIV +N+ ++ + ++G V+ A +    MK NG  P+  TY S+   +  
Sbjct: 120 DEM-KSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCK 178

Query: 441 ARKPGEALLLWKEIKERCEV 460
           A +  EA+ +++++++  +V
Sbjct: 179 ANRLDEAVEIFEQMEQNRQV 198


>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
 gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
          Length = 574

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 199/455 (43%), Gaps = 64/455 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +  +G+ P + +++T+++ +      G + S+      V  V +       S +K D+  
Sbjct: 71  LAETGHRPSLISYTTLLAAMTVQKQYGSISSI------VSEVEQ-------SGTKLDSIF 117

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NAV+NA +  G  +  +Q   +M E G  P   TYN +IK    A +      +L+ +L
Sbjct: 118 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLML 177

Query: 121 EMG---ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           E G   +   + TF  LV A+     +E A  +V+ M E       +        Y  + 
Sbjct: 178 EEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKG 237

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           E     + EV EK+            ++ +   PN R    ++ GY  EGRV D +R + 
Sbjct: 238 E-TVRAESEVVEKM------------VMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVR 284

Query: 238 AMRRQEDNAS--------------------------------HPDHVTYTTVVSALVKAG 265
            M+     A+                                  D +TY+TV++A   AG
Sbjct: 285 RMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAG 344

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            M++A QV  EM + GV  +   Y+IL KGY +     KA+ELL  +  +++  P+VV +
Sbjct: 345 YMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKGPKKAEELLETLIVESR--PNVVIF 402

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             +I G+        A+  FN+M   G++P   ++ TLM  +    QP  A +V  +M+R
Sbjct: 403 TTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVL-QMMR 461

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
              VK +   + +L E +   GL +E+ + I  +K
Sbjct: 462 GCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 185/431 (42%), Gaps = 75/431 (17%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++N     G+P +   +F  + E G +P +++Y  ++       +   +  ++  + + G
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE----- 178
             L    F +++ A+   G++E A   VQA+ +        ++EL L   +S        
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDA---VQALLK--------MKELGLNPTTSTYNTLIKG 159

Query: 179 ----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  +   E+ + +L                  PN R +  L++ +  + +V +   
Sbjct: 160 YGIAGKPERSSELLDLMLEEG----------NVDVGPNIRTFNVLVQAWCKKKKVEEAWE 209

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE---MTRIGVPANRITYNI 291
           ++   ++ E+    PD VTY T+ +  V+ G   RA   + E   M     P  R T  I
Sbjct: 210 VV---KKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGR-TCGI 265

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD-------------- 337
           ++ GYC++ ++      +R M  + ++E ++V +N LI+GF+ + D              
Sbjct: 266 VVGGYCREGRVRDGLRFVRRM-KEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKEC 324

Query: 338 -----------------SAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
                            SAG    A   F EM   G+ P   +Y+ L K +  +  PK A
Sbjct: 325 NVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKGPKKA 384

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            ++ + ++ + R   ++V +  ++ G+C  G +++A R+  +M + G  PN+ T+ +L  
Sbjct: 385 EELLETLIVESRP--NVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMW 442

Query: 437 GISLARKPGEA 447
           G    ++P +A
Sbjct: 443 GYLEVKQPWKA 453



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 34/311 (10%)

Query: 216 YTTLMKGYMNE---GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           YTTL+     +   G +S  V  +      E + +  D + +  V++A  ++G+M+ A Q
Sbjct: 83  YTTLLAAMTVQKQYGSISSIVSEV------EQSGTKLDSIFFNAVINAFSESGNMEDAVQ 136

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE--PDVVSYNILID 330
            L +M  +G+     TYN L+KGY    + +++ ELL  M ++  ++  P++ ++N+L+ 
Sbjct: 137 ALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQ 196

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA-NKVFDEMLRDPRV 389
            +        A     +M   G+ P  ++Y T+   +    +   A ++V ++M+   + 
Sbjct: 197 AWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKA 256

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPG--E 446
           K +     ++V GYCR G V +  R + RMKE     N+  + SL NG + +  + G  E
Sbjct: 257 KPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDE 316

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
            L L KE    C VK + +   +           +++A +     A +  KA ++   M 
Sbjct: 317 VLTLMKE----CNVKADVITYST-----------VMNAWSS----AGYMEKAAQVFKEMV 357

Query: 507 EHGIPPNKTKY 517
           + G+ P+   Y
Sbjct: 358 KAGVKPDAHAY 368



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 14/180 (7%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A T F  +   G  P+ ISYTTL+ A  +  Q    + +  E +     K+D + +N ++
Sbjct: 64  AQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSE-VEQSGTKLDSIFFNAVI 122

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             +   G +E+A + + +MKE G  P  +TY +L  G  +A KP  +        E  ++
Sbjct: 123 NAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERS-------SELLDL 175

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             E  N D      + P+    + L     +     +A E+V  MEE G+ P+   Y  I
Sbjct: 176 MLEEGNVD------VGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTI 229


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 179/377 (47%), Gaps = 23/377 (6%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRK--HLLVFVLERILEMGITLCMTTFQSLVAA 137
           LF +M + G +  V+TY V+I    R   K  H L  +LE + E G       +  LV  
Sbjct: 4   LFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALR-LLEVMKESGKKPDEILYNCLVNG 62

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
            V  G LE AE I+  M+  +     +     +++Y+  N G   D  ++F+++      
Sbjct: 63  LVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYA--NTGRLQDCRKLFQEMKD---- 116

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                    K  +PNS  Y  L++GY  +G   + + +   M   +      D  TY   
Sbjct: 117 ---------KGESPNSWTYNALIQGYGRKGLFKEALELYDEM---DGVGCAKDVHTYNIA 164

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           ++   K G ++   ++L EM   GVP +++TYN LL  Y ++    KA E+LREM + A 
Sbjct: 165 IAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTE-AG 223

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
             P++ +YNI++         A A   F  ++++G+ P  ++Y+ ++  +        A 
Sbjct: 224 YRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAA 283

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           K++DEM+    +   I+A++ L+E Y   G+ +EA    + M+++G  P+   Y +L + 
Sbjct: 284 KLWDEMIEAGCIPC-IIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDA 342

Query: 438 ISLARKPGEALLLWKEI 454
              A +  EA LL+ E+
Sbjct: 343 YGKAGRCREAELLYFEM 359



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 148/330 (44%), Gaps = 25/330 (7%)

Query: 216 YTTLMKGYMNE-GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           YT ++ GY+ +  ++   +R+L  M+   ++   PD + Y  +V+ LV +G ++ A ++L
Sbjct: 20  YTVIIHGYLRQKSKLDHALRLLEVMK---ESGKKPDEILYNCLVNGLVNSGRLEAAEKIL 76

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M R  V AN +TY  L+K Y    ++   ++L +EM D  +  P+  +YN LI G+  
Sbjct: 77  DDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGE-SPNSWTYNALIQGYGR 135

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-VKVDI 393
                 AL  ++EM   G A    +Y   +  +      +   ++ DEM  D + V  D 
Sbjct: 136 KGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEM--DTKGVPPDQ 193

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N L++ Y +     +A  I+  M E G+ PN+ TY  + +     +   EA  L++ 
Sbjct: 194 VTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFEN 253

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +K +  V                P+     A+  +  R   + +A ++   M E G  P 
Sbjct: 254 LKSKGVV----------------PNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPC 297

Query: 514 KTKYKKIYVEMHSRMFTSKHASQARQDRRR 543
              Y  + +E +      + A    QD R+
Sbjct: 298 IIAYSGL-IESYGHHGMYQEALACFQDMRK 326



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 23/251 (9%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYC-QQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           A  +   M + G  A  +TY +++ GY  Q+ ++D A  LL  M +  K +PD + YN L
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGK-KPDEILYNCL 59

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ++G +       A    ++M+   ++   ++YT L+K +A + + +   K+F EM +D  
Sbjct: 60  VNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEM-KDKG 118

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              +   +N L++GY R GL +EA  + + M   G   +V TY      I++A      L
Sbjct: 119 ESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYN-----IAIAMYGKRGL 173

Query: 449 LLWKEIKERC--EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           L   E  ER   E+  +GV           PD+   + L D+  + ++F KA EI+  M 
Sbjct: 174 L---EDMERLLDEMDTKGV----------PPDQVTYNTLLDVYAKKSYFVKAHEILREMT 220

Query: 507 EHGIPPNKTKY 517
           E G  PN   Y
Sbjct: 221 EAGYRPNIWTY 231



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 153/356 (42%), Gaps = 20/356 (5%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S  KPD   YN ++N   N G+ +   ++ D M       +++TY  +IK  A   R   
Sbjct: 47  SGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQD 106

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              + + + + G +    T+ +L+  Y   G  + A  +   M +G     K +   ++ 
Sbjct: 107 CRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEM-DGV-GCAKDVHTYNIA 164

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                  G  +D     E+LL + ++    PP        +   Y TL+  Y    + S 
Sbjct: 165 IAMYGKRGLLED----MERLL-DEMDTKGVPP--------DQVTYNTLLDVY---AKKSY 208

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V+    +R   +    P+  TY  ++S+  K  S+  A Q+   +   GV  N +TY+ 
Sbjct: 209 FVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSA 268

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           +L  Y +     +A +L  EM +   I P +++Y+ LI+ +        AL  F +MR  
Sbjct: 269 MLSLYGRHGLYTEAAKLWDEMIEAGCI-PCIIAYSGLIESYGHHGMYQEALACFQDMRKS 327

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           GI P    YT LM A+  + + + A  ++ EM ++  V  D + + +LV  +   G
Sbjct: 328 GIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVP-DGITYGILVRAFANAG 382



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 18/212 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN +L+  A      K  ++  +M E G +P++ TYN+M+    +         +
Sbjct: 191 PDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQL 250

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +   G+   + T+ ++++ Y   G    A  +   M E     C I     +E Y  
Sbjct: 251 FENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYG- 309

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            + G   +    F+ +  + I              P+++IYT LM  Y   GR  +   +
Sbjct: 310 -HHGMYQEALACFQDMRKSGI-------------VPDTKIYTALMDAYGKAGRCREAELL 355

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              M ++      PD +TY  +V A   AG +
Sbjct: 356 YFEMTKE---GFVPDGITYGILVRAFANAGRL 384



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 19/188 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV-FDEMLRDPRVKVDIVAWNML 399
           A + F  M   G   T ++YT ++  + L  + KL + +   E++++   K D + +N L
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGY-LRQKSKLDHALRLLEVMKESGKKPDEILYNCL 59

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           V G    G +E A++I++ MK +    N+ TY +L    +   +  +   L++E+K++ E
Sbjct: 60  VNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGE 119

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
                            P+    +AL     R   F++ALE+   M+  G   +   Y  
Sbjct: 120 ----------------SPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTY-N 162

Query: 520 IYVEMHSR 527
           I + M+ +
Sbjct: 163 IAIAMYGK 170


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 34/394 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHE-FGAKPDVLTYNVMIK-LCARASRKHLL 112
           +PD   +N ++       +P++   +  +M E FG  P + T+N+++  LC   S K L 
Sbjct: 151 RPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCK--SGKVLA 208

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
                  +   + +   TF  L+   V  G +  A ++ Q   E   + C I    D+  
Sbjct: 209 AMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQ---ETTTNGCTI----DIHT 261

Query: 173 YSS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y++            +   + EK+  N   P+                Y  L+ G    G
Sbjct: 262 YTAIVNWLAKNKKIQEAVALMEKITANGCTPTIAT-------------YNALLNGLCKMG 308

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R+ + + +L   R+  DN   PD VTYT+++  L K      A ++  EM   G+  + +
Sbjct: 309 RLEEAIDLL---RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTV 365

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            Y  L++G  Q  +I +A  + + M     + PDVV+ + +IDG         A+  F  
Sbjct: 366 CYTALIRGLLQTGKIPQASSVYKTMTSHGCV-PDVVTLSTMIDGLSKAGRIGAAVRIFKS 424

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M ARG+AP ++ Y+ L+     + +   A ++  +M +      D + +N+L++G C+ G
Sbjct: 425 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM-KKAFCTPDTITYNILIDGLCKSG 483

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
            VE A+   + M E G  P+V TY  L +G+  A
Sbjct: 484 DVEAARAFFDEMLEAGCKPDVYTYNILISGLCKA 517



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 176/402 (43%), Gaps = 35/402 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D   Y A++N  A   K ++ + L +++   G  P + TYN ++    +  R    + +L
Sbjct: 258 DIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 317

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSS 175
            +I++ G T  + T+ SL+    G G  + +    +  +E   R +      LD   Y++
Sbjct: 318 RKIVDNGCTPDVVTYTSLID---GLGKEKRSFEAYKLFKEMASRGL-----ALDTVCYTA 369

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEP---PLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              G           LL     P +      +      P+    +T++ G    GR+   
Sbjct: 370 LIRG-----------LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAA 418

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           VR+  +M   E     P+ V Y+ ++  L KA  MD A ++LA+M +     + ITYNIL
Sbjct: 419 VRIFKSM---EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNIL 475

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G C+   ++ A+    EM  +A  +PDV +YNILI G     ++  A    ++M    
Sbjct: 476 IDGLCKSGDVEAARAFFDEML-EAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM---- 530

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            + ++  Y++L+     S + +    +F EM R             L+   C+   V+EA
Sbjct: 531 -SSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQ--TRTRLIFHLCKANRVDEA 587

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             +   +++ G  P+   Y S+ + +  + K  E   +++E+
Sbjct: 588 VSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM 628



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 141/309 (45%), Gaps = 24/309 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMD 268
           AP+ + +  ++ G    G+V   +    A+RR     S P    T++ +++ LVKAG M 
Sbjct: 187 APSLKTHNLVLHGLCKSGKVLAAMDHFEAVRR-----SMPVSAATFSILINGLVKAGMMI 241

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A  +  E T  G   +  TY  ++    +  +I +A  L+ ++  +    P + +YN L
Sbjct: 242 QAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANG-CTPTIATYNAL 300

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           ++G   +     A+    ++   G  P  ++YT+L+       +   A K+F EM     
Sbjct: 301 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRG- 359

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           + +D V +  L+ G  + G + +A  + + M  +G  P+V T  ++ +G+S A + G A+
Sbjct: 360 LALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAV 419

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            ++K ++ R                 L P+E +  AL     +A     ALE++A M++ 
Sbjct: 420 RIFKSMEAR----------------GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 463

Query: 509 GIPPNKTKY 517
              P+   Y
Sbjct: 464 FCTPDTITY 472



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 23/292 (7%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYNILLKGYCQQLQIDKAKE 307
           PD  T+  +++    A   + A  V+ EM    GV  +  T+N++L G C+  ++  A +
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMD 211

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
               +     +     +++ILI+G +       A +   E    G      +YT ++   
Sbjct: 212 HFEAVRRSMPVS--AATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWL 269

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
           A + + + A  + +++  +      I  +N L+ G C+MG +EEA  ++ ++ +NG  P+
Sbjct: 270 AKNKKIQEAVALMEKITANGCTPT-IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 328

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKER-------CEVKK-EGVNADSDLPPP----- 474
           V TY SL +G+   ++  EA  L+KE+  R       C      G+     +P       
Sbjct: 329 VVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYK 388

Query: 475 ------LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                   PD   L  + D   +A     A+ I   ME  G+ PN+  Y  +
Sbjct: 389 TMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 440



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 134/321 (41%), Gaps = 41/321 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P V   ST++  L+ +G  G   +V++F  +  R              P+   
Sbjct: 390 MTSHGCVPDVVTLSTMIDGLSKAGRIGA--AVRIFKSMEAR-----------GLAPNEVV 436

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+A+++      K    L++  QM +    PD +TYN++I  LC     +    F  + +
Sbjct: 437 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF-FDEM 495

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           LE G    + T+  L++     G+ + A  ++  M   R     ++  L          G
Sbjct: 496 LEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLC-------KSG 548

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             +    +F ++               ++   NS+  T L+       RV + V +  A+
Sbjct: 549 KLEGGCMLFHEM--------------ERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAI 594

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R++      P    Y +++SAL+K+G ++  + V  EMTR   P +R+TYN LL G    
Sbjct: 595 RKE----GMPHPYAYNSIISALIKSGKVNEGQAVYQEMTRWWKP-DRVTYNALLNGMIGA 649

Query: 300 LQIDKAKELLREMADDAKIEP 320
            ++D+A     EM     + P
Sbjct: 650 NRMDRAHYYYLEMTGRGYVPP 670



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 95/238 (39%), Gaps = 29/238 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  YN +++     G  +     FD+M E G KPDV TYN++I    +A        V
Sbjct: 467 PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGV 526

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYS 174
           L+ +           + SLV      G LE    +   M R G  +     R   +    
Sbjct: 527 LDDMSSSRFV-----YSSLVDGLCKSGKLEGGCMLFHEMERSGVAN--SQTRTRLIFHLC 579

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             N  D+          L N+I        +P  +A NS I   +  G +NEG+      
Sbjct: 580 KANRVDEAVS-------LFNAIRKEG----MPHPYAYNSIISALIKSGKVNEGQ------ 622

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG-VPANRITYNI 291
              A+ ++      PD VTY  +++ ++ A  MDRA     EMT  G VP   I + +
Sbjct: 623 ---AVYQEMTRWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKL 677



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 14/132 (10%)

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGLVEEAKR 414
           +IS   ++K F       LA ++F + L  PR   +  +   N L++ + R     EA  
Sbjct: 82  EISTDAVVKIFQCLKDADLAWELF-QCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGN 140

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +++      F P+V T+  L  G  LAR+P EA  + +E++E           D  + P 
Sbjct: 141 LLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEE-----------DFGVAPS 189

Query: 475 LKPDEELLDALA 486
           LK    +L  L 
Sbjct: 190 LKTHNLVLHGLC 201


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 153/302 (50%), Gaps = 30/302 (9%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y+T++ G+  EG   D  +ML       D    P+ VTY ++++AL KA ++D+A
Sbjct: 86  PDVVSYSTVINGFFKEG---DLDKML-------DQRISPNVVTYNSIIAALCKAQTVDKA 135

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL  M + GV  + +TYN ++ G+C   Q  +A   L++M  D  +EPDVV+YN L+D
Sbjct: 136 MEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG-VEPDVVTYNSLMD 194

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A   F+ M  RG+ P   +Y TL++ +A        + + D M+R+  + 
Sbjct: 195 YLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG-IH 253

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +   +++LV  Y +   VEEA  +  +M++ G  PN  TYG++ + +  + +  +A+L 
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 451 WKEIKERCEVKKEGVNADSDLPPPL----------KPDEELLDALAD--ICVRAAFFRKA 498
           ++++ +      EG+  DS +   L          +  EEL   + D  IC+   FF   
Sbjct: 314 FEQMID------EGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 367

Query: 499 LE 500
           ++
Sbjct: 368 ID 369



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 154/344 (44%), Gaps = 27/344 (7%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
            D  PD  +Y+ V+N     G         D+M +    P+V+TYN +I    +A     
Sbjct: 82  GDCPPDVVSYSTVINGFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDK 134

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + VL  +++ G+     T+ S+V  +   G  + A   ++ MR    +   ++    L 
Sbjct: 135 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEP-DVVTYNSLM 193

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           DY  +N G   +  ++F+ +               +   P+   Y TL++GY  +G + +
Sbjct: 194 DYLCKN-GRCTEARKIFDSMTK-------------RGLKPDITTYGTLLQGYATKGALVE 239

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +L  M R   N  HP+H  ++ +V A  K   ++ A  V ++M + G+  N +TY  
Sbjct: 240 MHGLLDLMVR---NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++   C+  +++ A     +M D+  + PD + YN LI    + D    A   F EM  R
Sbjct: 297 VIDVLCKSGRVEDAMLYFEQMIDEG-LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR 355

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           GI  + I + +++ +     +   + K+FD M+R   VK DI+ 
Sbjct: 356 GICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVR-IGVKPDIIT 398



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 174/383 (45%), Gaps = 37/383 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK--PDVLTYNVMIKLCARASRKHLLV 113
           PD  +YN +LN   +  + ++ L+L   M + G    PDV++Y+ +I    +        
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGD----- 103

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
             L+++L+  I+  + T+ S++AA      L  A+T+ +AM E    + K     D   Y
Sbjct: 104 --LDKMLDQRISPNVVTYNSIIAA------LCKAQTVDKAM-EVLTTMVKSGVMPDCMTY 154

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT----FAPNSRIYTTLMKGYMNEGRV 229
           +S   G              +S  P      L K       P+   Y +LM      GR 
Sbjct: 155 NSIVHG------------FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 202

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           ++  ++  +M ++      PD  TY T++      G++     +L  M R G+  N   +
Sbjct: 203 TEARKIFDSMTKR---GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           +IL+  Y +Q ++++A  +  +M     + P+ V+Y  +ID          A+ +F +M 
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQG-LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G+ P  I Y +L+ +  +  + + A ++F EML D  + +  + +N +++ +C+ G V
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEML-DRGICLSTIFFNSIIDSHCKEGRV 377

Query: 410 EEAKRIIERMKENGFYPNVATYG 432
            E+ ++ + M   G  P++ T G
Sbjct: 378 IESGKLFDLMVRIGVKPDIITLG 400



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 31/197 (15%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD-AKIEPDVVSYNIL 328
           AR V  E+ R G+P +  +YNILL G C + +  +A ELL  MADD     PDVVSY+ +
Sbjct: 36  ARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTV 94

Query: 329 IDGFI-------LIDDSAG---------------------ALTFFNEMRARGIAPTKISY 360
           I+GF        ++D                         A+     M   G+ P  ++Y
Sbjct: 95  INGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTY 154

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++  F  S QPK A  VF + +R   V+ D+V +N L++  C+ G   EA++I + M 
Sbjct: 155 NSIVHGFCSSGQPKEA-IVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT 213

Query: 421 ENGFYPNVATYGSLANG 437
           + G  P++ TYG+L  G
Sbjct: 214 KRGLKPDITTYGTLLQG 230



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 150/367 (40%), Gaps = 69/367 (18%)

Query: 8   PHVKAWSTVVSRLAASGD-----DGPVE-SVKLFDVVVKRVRKFSDPD---------IVS 52
           P V ++STV++     GD     D  +  +V  ++ ++  + K    D         + S
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
              PD   YN++++   + G+PK+ +    +M   G +PDV+TYN ++    +  R    
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 205

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             + + + + G+   +TT+ +L+  Y   G L                            
Sbjct: 206 RKIFDSMTKRGLKPDITTYGTLLQGYATKGAL---------------------------- 237

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              E  G       + + ++ N I+             PN  +++ L+  Y  + +V + 
Sbjct: 238 --VEMHG-------LLDLMVRNGIH-------------PNHYVFSILVCAYAKQEKVEEA 275

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   MR+Q  N   P+ VTY TV+  L K+G ++ A     +M   G+  + I YN L
Sbjct: 276 MLVFSKMRQQGLN---PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSL 332

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +   C   + +KA+EL  EM D   I    + +N +ID          +   F+ M   G
Sbjct: 333 IHSLCIFDKWEKAEELFLEMLDRG-ICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIG 391

Query: 353 IAPTKIS 359
           + P  I+
Sbjct: 392 VKPDIIT 398



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 35/220 (15%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAPTKISYTTLMKAFALSSQPKLAN 377
           PDV SYNIL++G    + S  AL   + M   G    P  +SY+T++  F          
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGD----- 103

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
              D+ML D R+  ++V +N ++   C+   V++A  ++  M ++G  P+  TY S+ +G
Sbjct: 104 --LDKML-DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
              + +P EA++  K+++       +GV          +PD    ++L D   +     +
Sbjct: 161 FCSSGQPKEAIVFLKKMR------SDGV----------EPDVVTYNSLMDYLCKNGRCTE 204

Query: 498 ALEIVACMEEHGIPPNKTKY---------KKIYVEMHSRM 528
           A +I   M + G+ P+ T Y         K   VEMH  +
Sbjct: 205 ARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL 244



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 136/325 (41%), Gaps = 69/325 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-KPDTA 59
           M++SG +P    ++++V    +SG   P E++    V +K++R        SD  +PD  
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQ--PKEAI----VFLKKMR--------SDGVEPDVV 187

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++     G+  +  ++FD M + G KPD+ TY  +++  A       +  +L+ +
Sbjct: 188 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLM 247

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +  GI      F  LV AY         E + +AM                         
Sbjct: 248 VRNGIHPNHYVFSILVCAYAK------QEKVEEAML------------------------ 277

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                  VF K+    +N             PN+  Y T++      GRV D +     M
Sbjct: 278 -------VFSKMRQQGLN-------------PNAVTYGTVIDVLCKSGRVEDAMLYFEQM 317

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               D    PD + Y +++ +L      ++A ++  EM   G+  + I +N ++  +C++
Sbjct: 318 I---DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKE 374

Query: 300 LQIDKAKELLREMADDAKIEPDVVS 324
            ++ ++ +L   M     ++PD+++
Sbjct: 375 GRVIESGKLFDLMV-RIGVKPDIIT 398


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 189/462 (40%), Gaps = 72/462 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P T  +N +L + A        L L  QM  FG  PDV T  ++I      +R       
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-----------DVCK 163
           L +IL++G     TTF +L+      G +  A  +   M  EG +            +CK
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 164 I------IRELDLEDYSSENEGDDDDDDEVFEKLLPN---------SINPSSEPPLLPKT 208
           +      IR L      S  +G+   +  VF  L+ +         + N  SE  ++ K 
Sbjct: 188 VGNTSAAIRLL-----RSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSE--MITKG 240

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +PN   Y +L+ G     ++ +   +   M    D+   PD  T  TVV AL K G + 
Sbjct: 241 ISPNIVTYNSLIHGLC---KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVA 297

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V+  M   GV  N +TYN L+ G+C + ++D A ++   M     +  +V+SYN L
Sbjct: 298 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV-ANVISYNTL 356

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G+  I     A+  F EM  + + P  ++Y TL+       + + A  +F EM+   +
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 389 V----------------------------------KVDIVAWNMLVEGYCRMGLVEEAKR 414
           +                                    DI  +  +++G CR G +E+A+ 
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           +   +   G  PNV TY  + +G+       EA  L+ E+ +
Sbjct: 477 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK 518



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 184/470 (39%), Gaps = 71/470 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P    ++T++  L   G  G  E++ LFD ++               +P+   
Sbjct: 131 ILKLGHQPDATTFTTLIRGLCVEGKIG--EALHLFDKMIGE-----------GFQPNVVT 177

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G     ++L   M +   +P+V+ ++ +I    +  +      +   ++
Sbjct: 178 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMI 237

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELD-LEDYSSEN 177
             GI+  + T+ SL+       + +   T++  M + +   DV  +   +D L       
Sbjct: 238 TKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVA 297

Query: 178 EGDDDDDDEVFEKLLPNSINPSS---------EPPLLPKTF--------APNSRIYTTLM 220
           E  D  D  +   + PN +  ++         E  +  K F          N   Y TL+
Sbjct: 298 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 357

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            GY     V   + +   M RQE     P+ VTY T++  L   G +  A  +  EM   
Sbjct: 358 NGYCKIQSVDKAMYLFEEMSRQELT---PNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 414

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM------------------------ADDA 316
           G   + +TY  L    C+   +DKA  LL+ +                         +DA
Sbjct: 415 GQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 474

Query: 317 K----------IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           +          ++P+V +YNI+I G       A A   F+EM   G +P   +Y  + + 
Sbjct: 475 RDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRG 534

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           F  +++     ++ +EML      VD+    +LV      GL +  K+I+
Sbjct: 535 FLRNNEALRTIELLEEMLARG-FSVDVSTTTLLVGMLSDDGLDQSVKQIL 583



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 118/287 (41%), Gaps = 21/287 (7%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           ++ T  S  +   ++D A      M     P + + +N LL    +         L R+M
Sbjct: 37  SHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM 96

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
            D   I PDV +  I+I+    ++    A +   ++   G  P   ++TTL++   +  +
Sbjct: 97  -DSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 155

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
              A  +FD+M+ +   + ++V +  L+ G C++G    A R++  M++    PNV  + 
Sbjct: 156 IGEALHLFDKMIGEG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFS 214

Query: 433 SLANGISLARKPGEALLLWKEIKER-------------------CEVKKEGVNADSDLPP 473
           +L + +   R+  EA  ++ E+  +                   CE K      +  +  
Sbjct: 215 TLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDS 274

Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            + PD   L+ + D   +     +A ++V  M   G+ PN   Y  +
Sbjct: 275 KIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 321


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 196/461 (42%), Gaps = 43/461 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M   G LP+   ++TV++   A G+ G V E++ LFD + K           S   P+  
Sbjct: 340 MTSKGLLPNAFTYNTVMT---AYGNIGKVDEALALFDQMKK-----------SGCVPNVN 385

Query: 60  AYNAVLNACANLGKPKKF---LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
            YN +L     LGK  +F   L++  +M   G  P+ +T+N M+ +C +   +  +  VL
Sbjct: 386 TYNFILGM---LGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 442

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E +   G+ L   T+ +L+AAY   G    A  +   M       C       L   S  
Sbjct: 443 EGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLS-- 500

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +GD      +  K+               K F PN + Y+ L++ Y   G ++     +
Sbjct: 501 RQGDWSTAQSIVSKMRT-------------KGFKPNDQSYSLLLQCYAKGGNIAG----I 543

Query: 237 GAMRRQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            A+ ++    +  P  V   T+V A  K   +    +   E+   G   + + +N +L  
Sbjct: 544 DAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSM 603

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +     K  E+   +   + + PD+++YN L+D +    +S  A    N++++  + P
Sbjct: 604 YAKNGMYSKVTEIFDSI-KQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKP 662

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SY T++  F      K A ++  EM+ D      +V ++ LV GY  + +  EA+ +
Sbjct: 663 DVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPC-VVTYHTLVGGYASLEMFSEAREV 721

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           I  M ++   P   TY  + +    A++  EA     E+ E
Sbjct: 722 INYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEVSE 762



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 113/555 (20%), Positives = 227/555 (40%), Gaps = 54/555 (9%)

Query: 13  WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS----------DSKPDTAAYN 62
           W   ++ L  +G +G  ++  L ++VV+ + +    D V            S+ D  AY 
Sbjct: 119 WEWALALLRWAGAEGAADASAL-EMVVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYT 177

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH-LLVFVLERILE 121
            VL+A +  G+ ++ ++LF ++   G  P ++TYNV++ +  R  R    +V +L+ +  
Sbjct: 178 TVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRA 237

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS------- 174
            G+     T  +++AA    G ++ A    + ++      C +     L+ +        
Sbjct: 238 AGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTE 297

Query: 175 -----SENEGDDDDDDEVFEKLLPNSINPSS--------EPPLLPKTFAPNSRIYTTLMK 221
                 E E D    D V    L  +   +            +  K   PN+  Y T+M 
Sbjct: 298 ALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMT 357

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
            Y N G+V + + +   M++   +   P+  TY  ++  L K        ++L EM+R G
Sbjct: 358 AYGNIGKVDEALALFDQMKK---SGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSG 414

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              NR+T+N +L   C +  ++     + E      +E    +YN LI  +        A
Sbjct: 415 CTPNRVTWNTML-AVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNA 473

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
              +NEM + G AP   +Y  L+   +       A  +  +M R    K +  ++++L++
Sbjct: 474 FKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKM-RTKGFKPNDQSYSLLLQ 532

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
            Y + G +     I + +     +P+     +L       R+ G     ++E+K R    
Sbjct: 533 CYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKAR---- 588

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
             G N          PD  + +++  +  +   + K  EI   +++ G+ P+   Y  + 
Sbjct: 589 --GYN----------PDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSL- 635

Query: 522 VEMHSRMFTSKHASQ 536
           ++M+++   S  A +
Sbjct: 636 MDMYAKCSESWEAEK 650



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 132/602 (21%), Positives = 239/602 (39%), Gaps = 125/602 (20%)

Query: 10  VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACA 69
           V+A++TV+  L+ +G      +V+LF    +  R+   P +V+        YN VL+   
Sbjct: 173 VRAYTTVLHALSRAGRYE--RAVELF---AELRRQGVAPTLVT--------YNVVLDVYG 219

Query: 70  NLGKP-KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
            +G+   + + L D+M   G +PD  T + +I  C R       V   E +   G T C+
Sbjct: 220 RMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCV 279

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF 188
            T+ +L+  +   G+   A   ++ ++E  +D C+        D  + NE         F
Sbjct: 280 VTYNALLQVFGKAGNYTEA---LRVLKEMEQDGCQ-------PDAVTYNELAGTYARAGF 329

Query: 189 EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV--------------- 233
            +     ++  +   LLP  F      Y T+M  Y N G+V + +               
Sbjct: 330 YEEAAKCLDTMTSKGLLPNAFT-----YNTVMTAYGNIGKVDEALALFDQMKKSGCVPNV 384

Query: 234 --------------------RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
                                MLG M R   +   P+ VT+ T+++   K G  D   +V
Sbjct: 385 NTYNFILGMLGKKSRFTVMLEMLGEMSR---SGCTPNRVTWNTMLAVCGKRGMEDYVTRV 441

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L  M   GV  +R TYN L+  Y +      A ++  EM   A   P + +YN L++   
Sbjct: 442 LEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS-AGFAPCLTTYNALLNVLS 500

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ-----------------PK-- 374
              D + A +  ++MR +G  P   SY+ L++ +A                     P   
Sbjct: 501 RQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWV 560

Query: 375 ------LAN----------KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
                 +AN          K F E ++      D+V +N ++  Y + G+  +   I + 
Sbjct: 561 ILRTLVIANFKCRRLGGIEKAFQE-VKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDS 619

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP- 477
           +K++G  P++ TY SL +  +   +  EA  +  ++K   +VK + V+ ++ +    K  
Sbjct: 620 IKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSS-QVKPDVVSYNTVINGFCKQG 678

Query: 478 ---------DEELLDALADICV----------RAAFFRKALEIVACMEEHGIPPNKTKYK 518
                     E + D +A   V              F +A E++  M +H + P +  Y+
Sbjct: 679 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYR 738

Query: 519 KI 520
           ++
Sbjct: 739 RV 740


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 153/302 (50%), Gaps = 30/302 (9%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y+T++ G+  EG   D  +ML       D    P+ VTY ++++AL KA ++D+A
Sbjct: 86  PDVVSYSTVINGFFKEG---DLDKML-------DQRISPNVVTYNSIIAALCKAQTVDKA 135

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL  M + GV  + +TYN ++ G+C   Q  +A   L++M  D  +EPDVV+YN L+D
Sbjct: 136 MEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG-VEPDVVTYNSLMD 194

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A   F+ M  RG+ P   +Y TL++ +A        + + D M+R+  + 
Sbjct: 195 YLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG-IH 253

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +   +++LV  Y +   VEEA  +  +M++ G  PN  TYG++ + +  + +  +A+L 
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 451 WKEIKERCEVKKEGVNADSDLPPPL----------KPDEELLDALAD--ICVRAAFFRKA 498
           ++++ +      EG+  DS +   L          +  EEL   + D  IC+   FF   
Sbjct: 314 FEQMID------EGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 367

Query: 499 LE 500
           ++
Sbjct: 368 ID 369



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 170/387 (43%), Gaps = 37/387 (9%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
            D  PD  +Y+ V+N     G         D+M +    P+V+TYN +I    +A     
Sbjct: 82  GDCPPDVVSYSTVINGFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDK 134

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            + VL  +++ G+     T+ S+V  +   G  + A   ++ MR    +   ++    L 
Sbjct: 135 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEP-DVVTYNSLM 193

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           DY  +N G   +  ++F+ +               +   P+   Y TL++GY  +G + +
Sbjct: 194 DYLCKN-GRCTEARKIFDSMTK-------------RGLKPDITTYGTLLQGYATKGALVE 239

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +L  M R   N  HP+H  ++ +V A  K   ++ A  V ++M + G+  N +TY  
Sbjct: 240 MHGLLDLMVR---NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           ++   C+  +++ A     +M D+  + PD + YN LI    + D    A   F EM  R
Sbjct: 297 VIDVLCKSGRVEDAMLYFEQMIDEG-LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR 355

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           GI  + I + +++ +     +   + K+FD M+R   VK DI+           +G  +E
Sbjct: 356 GICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVR-IGVKPDIIT----------LGRNDE 404

Query: 412 AKRIIERMKENGFYPNVATYGSLANGI 438
           AK +      NG  PN  TY  +A  I
Sbjct: 405 AKDLFVAFSSNGLVPNYWTYRLMAENI 431



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 125/280 (44%), Gaps = 47/280 (16%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD-AKIEPDVVSYNIL 328
           AR V  E+ R G+P +  +YNILL G C + +  +A ELL  MADD     PDVVSY+ +
Sbjct: 36  ARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTV 94

Query: 329 IDGFI-------LIDDSAG---------------------ALTFFNEMRARGIAPTKISY 360
           I+GF        ++D                         A+     M   G+ P  ++Y
Sbjct: 95  INGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTY 154

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++  F  S QPK A  VF + +R   V+ D+V +N L++  C+ G   EA++I + M 
Sbjct: 155 NSIVHGFCSSGQPKEA-IVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT 213

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  P++ TYG+L  G +                +   V+  G+  D  +   + P+  
Sbjct: 214 KRGLKPDITTYGTLLQGYA---------------TKGALVEMHGL-LDLMVRNGIHPNHY 257

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +   L     +     +A+ + + M + G+ PN   Y  +
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTV 297



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 35/220 (15%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAPTKISYTTLMKAFALSSQPKLAN 377
           PDV SYNIL++G    + S  AL   + M   G    P  +SY+T++  F          
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGF-------FKE 101

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
              D+ML D R+  ++V +N ++   C+   V++A  ++  M ++G  P+  TY S+ +G
Sbjct: 102 GDLDKML-DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
              + +P EA++  K+++       +GV          +PD    ++L D   +     +
Sbjct: 161 FCSSGQPKEAIVFLKKMR------SDGV----------EPDVVTYNSLMDYLCKNGRCTE 204

Query: 498 ALEIVACMEEHGIPPNKTKY---------KKIYVEMHSRM 528
           A +I   M + G+ P+ T Y         K   VEMH  +
Sbjct: 205 ARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL 244



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 88/431 (20%), Positives = 171/431 (39%), Gaps = 80/431 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-KPDTA 59
           M++SG +P    ++++V    +SG   P E++    V +K++R        SD  +PD  
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQ--PKEAI----VFLKKMR--------SDGVEPDVV 187

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            YN++++     G+  +  ++FD M + G KPD+ TY  +++  A       +  +L+ +
Sbjct: 188 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLM 247

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           +  GI      F  LV AY         E + +AM                         
Sbjct: 248 VRNGIHPNHYVFSILVCAYAK------QEKVEEAML------------------------ 277

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                  VF K+    +N             PN+  Y T++      GRV D +     M
Sbjct: 278 -------VFSKMRQQGLN-------------PNAVTYGTVIDVLCKSGRVEDAMLYFEQM 317

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               D    PD + Y +++ +L      ++A ++  EM   G+  + I +N ++  +C++
Sbjct: 318 I---DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKE 374

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ ++ +L   M     ++PD+++           +D A  L  F    + G+ P   +
Sbjct: 375 GRVIESGKLFDLMV-RIGVKPDIITLG--------RNDEAKDL--FVAFSSNGLVPNYWT 423

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  + +        +  +++F  M  D    VD    N +V    + G +  A   +  +
Sbjct: 424 YRLMAENIIGQGLLEELDQLFLSM-EDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMI 482

Query: 420 KENGFYPNVAT 430
            E  F    +T
Sbjct: 483 DEKHFSLEAST 493


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 111/515 (21%), Positives = 222/515 (43%), Gaps = 58/515 (11%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           LP+V  +S++++  A  G         + +  V+ +RK    +I+    P+   Y  +L+
Sbjct: 408 LPNVVTFSSIINGYAKKG---------MLNKAVEVLRKMVQMNIM----PNVFVYAILLD 454

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
                G+ +     + +M  +G + + + +++++    R+        +++ IL  GI L
Sbjct: 455 GYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYL 514

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG----DDD 182
            +  + SL+  Y   G+   A ++VQ M E  +D+     + D+  Y++  +G       
Sbjct: 515 DVFNYSSLMDGYFKEGNESAALSVVQEMTE--KDM-----QFDVVAYNALTKGLLRLGKY 567

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
           +   VF +++   +              P+   Y ++M  Y  +G+  + + +L  M+  
Sbjct: 568 EPKSVFSRMIELGL-------------TPDCVTYNSVMNTYFIQGKTENALDLLNEMKSY 614

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
                 P+ VTY  ++  L K G++++   VL EM  +G     I +  LLK Y +  + 
Sbjct: 615 ---GVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKA 671

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           D   ++ +++ D   +  + + YN LI     +  +  A     EM  +GI+   ++Y  
Sbjct: 672 DAILQIHKKLVD-MGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNA 730

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L++ +   S  + A   + +ML    +  +I  +N L+EG    GL+ +A +++  M+E 
Sbjct: 731 LIRGYCTGSHVEKAFNTYSQMLVSG-ISPNITTYNALLEGLSTNGLMRDADKLVSEMRER 789

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G  PN  TY  L +G        ++      IK  CE+  +G            P     
Sbjct: 790 GLVPNATTYNILVSGHGRVGNKRDS------IKLYCEMITKG----------FIPTTGTY 833

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           + L     +A   R+A E++  M   G  PN + Y
Sbjct: 834 NVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTY 868



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 207/474 (43%), Gaps = 55/474 (11%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKF--------------SDP 48
           ++G  P +  ++T+V+     GD    ESV      V  +  F                 
Sbjct: 173 KNGVKPDIVTYNTLVNAFCKRGDLAKAESV------VNEILGFRRDDESGVLNDCGVETW 226

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           D + D +P    +  ++ A         F  L++QM   G  PDV+T + ++    R  +
Sbjct: 227 DGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGK 286

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
                 +L  +  MG+     ++ ++++A +  G       +++A     + V + I  +
Sbjct: 287 LTEAAMLLREMYNMGLDPNHVSYTTIISALLKSG------RVMEAFNHQSQMVVRGI-SI 339

Query: 169 DLEDYSSENE-----GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
           DL   ++  +     G   + +E+F+ +L  ++              PN   YT L+ G+
Sbjct: 340 DLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNL-------------VPNCVTYTALLDGH 386

Query: 224 MNEGRV--SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
              G V  ++TV     +++ E     P+ VT++++++   K G +++A +VL +M ++ 
Sbjct: 387 CKVGDVEFAETV-----LQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMN 441

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           +  N   Y ILL GY +  Q + A    +EM     +E + + ++IL++          A
Sbjct: 442 IMPNVFVYAILLDGYFRTGQHEAAAGFYKEM-KSWGLEENNIIFDILLNNLKRSGGMKEA 500

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
            +   ++ ++GI     +Y++LM  +        A  V  EM  +  ++ D+VA+N L +
Sbjct: 501 QSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEM-TEKDMQFDVVAYNALTK 559

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           G  R+G   E K +  RM E G  P+  TY S+ N   +  K   AL L  E+K
Sbjct: 560 GLLRLG-KYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMK 612



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 179/443 (40%), Gaps = 74/443 (16%)

Query: 53  DSKPDTAAYNAVLNACANLGK--PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           D + D  AYNA+      LGK  PK    +F +M E G  PD +TYN ++       +  
Sbjct: 546 DMQFDVVAYNALTKGLLRLGKYEPK---SVFSRMIELGLTPDCVTYNSVMNTYFIQGKTE 602

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             + +L  +   G+   M T+  L+      G +E   +++  M                
Sbjct: 603 NALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEM---------------- 646

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                             L   + P   I+  L+K Y +  R +
Sbjct: 647 ----------------------------------LAVGYVPTPIIHKFLLKAY-SRSRKA 671

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D +  L   ++  D   + + + Y T+++ L + G   +A  VL EM   G+ A+ +TYN
Sbjct: 672 DAI--LQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYN 729

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L++GYC    ++KA     +M     I P++ +YN L++G         A    +EMR 
Sbjct: 730 ALIRGYCTGSHVEKAFNTYSQMLVSG-ISPNITTYNALLEGLSTNGLMRDADKLVSEMRE 788

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RG+ P   +Y  L+         + + K++ EM+    +      +N+L++ Y + G + 
Sbjct: 789 RGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTT-GTYNVLIQDYAKAGKMR 847

Query: 411 EAKRIIERMKENGFYPNVATYGSLANG-ISLARKP-----------GEALLLWKEIKERC 458
           +A+ ++  M   G  PN +TY  L  G   L+ +P            EA  L +E+ E+ 
Sbjct: 848 QARELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLLKLSYQNEAKKLLREMCEKG 907

Query: 459 EVKKEG--VNADSDLPPPLKPDE 479
            V  E   +   S+   P K D+
Sbjct: 908 HVPSESTLMYISSNFSAPGKRDD 930



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 120/594 (20%), Positives = 234/594 (39%), Gaps = 113/594 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ SG +P V   S+++  L   G        KL +  +  +R+  +  +     P+  +
Sbjct: 262 MIMSGVMPDVVTCSSILYGLCRHG--------KLTEAAM-LLREMYNMGL----DPNHVS 308

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++A    G+  +      QM   G   D++    M+    +A +      + + IL
Sbjct: 309 YTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTIL 368

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           ++ +     T+ +L+  +   GD+E AET++Q M +       +     +  Y+   +G 
Sbjct: 369 KLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAK--KGM 426

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR------------ 228
            +   EV  K++  +I              PN  +Y  L+ GY   G+            
Sbjct: 427 LNKAVEVLRKMVQMNI-------------MPNVFVYAILLDGYFRTGQHEAAAGFYKEMK 473

Query: 229 -------------VSDTVRMLGAMRRQE-------DNASHPDHVTYTTVVSALVKAGSMD 268
                        + + ++  G M+  +           + D   Y++++    K G+  
Sbjct: 474 SWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNES 533

Query: 269 RARQVLAEMT----------------------------------RIGVPANRITYNILLK 294
            A  V+ EMT                                   +G+  + +TYN ++ 
Sbjct: 534 AALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVMN 593

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
            Y  Q + + A +LL EM     + P++V+YNILI G          ++  +EM A G  
Sbjct: 594 TYFIQGKTENALDLLNEMKSYG-VMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYV 652

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           PT I +  L+KA++ S +     ++  +++ D  + ++ + +N L+   CR+G+ ++A  
Sbjct: 653 PTPIIHKFLLKAYSRSRKADAILQIHKKLV-DMGLNLNQMVYNTLITVLCRLGMTKKANV 711

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++  M   G   ++ TY +L  G        +A   + ++              S + P 
Sbjct: 712 VLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQM------------LVSGISPN 759

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
           +     LL+ L+         R A ++V+ M E G+ PN T Y  I V  H R+
Sbjct: 760 ITTYNALLEGLST----NGLMRDADKLVSEMRERGLVPNATTY-NILVSGHGRV 808



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 34/271 (12%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++P  F+ N  +++          +V D    LG +R      S  DHVTY TVV    K
Sbjct: 41  VVPNVFSVNLLVHSLC--------KVGDLGLALGYLRN-----SVFDHVTYNTVVWGFCK 87

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G  D+   +L+EM + GV  + +T NIL+KGYCQ   +  A+ ++  +     +  D +
Sbjct: 88  RGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLVGGG-VPLDAI 146

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
             N L+DG+  +   + AL    +    G+ P  ++Y TL+ AF        A  V +E+
Sbjct: 147 GLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEI 206

Query: 384 L---RDPRVKV-----------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           L   RD    V                  +V W  L+  YC+   +++   + E+M  +G
Sbjct: 207 LGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSG 266

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEI 454
             P+V T  S+  G+    K  EA +L +E+
Sbjct: 267 VMPDVVTCSSILYGLCRHGKLTEAAMLLREM 297



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           +G + + + + +EM   GV  N  + N+L+   C+   +  A   LR    D       V
Sbjct: 23  SGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYLRNSVFDH------V 76

Query: 324 SYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
           +YN ++ GF    L D   G L+   EM  +G+    ++   L+K +      + A  + 
Sbjct: 77  TYNTVVWGFCKRGLADQGFGLLS---EMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIM 133

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
             ++    V +D +  N LV+GYC +GLV  A  ++E   +NG  P++ TY +L N
Sbjct: 134 GNLV-GGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVN 188


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 181/407 (44%), Gaps = 32/407 (7%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASR 108
           S S P+   YN +L+     G+ K  + + + M + G + DV TYN+MI KLC   R++ 
Sbjct: 253 SCSLPNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTH 312

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRE 167
            +LL   L+R+    +     T+ +L+  +     + +A  I   M R+G +        
Sbjct: 313 AYLL---LKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTT 369

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           L ++ Y     G  D+   V  ++    + PS                Y+ ++ G ++E 
Sbjct: 370 L-IDGYC--RNGTIDEALRVLYEMQVAGVKPSEVT-------------YSAMLNGSVHEA 413

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
                          E     PD  TY  ++  L K G + +A++ ++ +  I    ++ 
Sbjct: 414 --------FSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQK 465

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           T N LL G C    +D+A +L  +M     I PD+ +Y IL+ GF        A+     
Sbjct: 466 TLNALLLGICNHGSLDEALDLCEKMVTINFI-PDIHTYTILLSGFCRKGKIVPAVILLQM 524

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M  +G+ P  ++YT L+K      Q K A+ +F E++    +  D +A+N ++ GY + G
Sbjct: 525 MLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKAG 584

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + + +  I  M +N  YPN A+Y  L +G         ++ L+K++
Sbjct: 585 KLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDM 631



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 213/486 (43%), Gaps = 88/486 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P +  ++T++     +G       V L+++ V  V            KP    
Sbjct: 355 MLRQGLKPSLATYTTLIDGYCRNGTIDEALRV-LYEMQVAGV------------KPSEVT 401

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY-NVMIKLCARASRKHLLVFVLERI 119
           Y+A+LN     G   +   ++D M ++G  PDV TY N++  LC      HL       +
Sbjct: 402 YSAMLN-----GSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGG---HL-------V 446

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
                  C+    S            I +  + A+  G   +C              N G
Sbjct: 447 QAKEFMSCIVHIPS-----------AIDQKTLNALLLG---IC--------------NHG 478

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
             D+  ++ EK++  +IN           F P+   YT L+ G+  +G++   V +L  M
Sbjct: 479 SLDEALDLCEKMV--TIN-----------FIPDIHTYTILLSGFCRKGKIVPAVILLQMM 525

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYNILLKGYCQ 298
               +    PD VTYT ++  L+K G +  A  +  E+  + G+ A+ I YN ++ GY +
Sbjct: 526 L---EKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLK 582

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++ K +  + +M  + K+ P+  SYNIL+ G I     + ++  + +M  +GI PT +
Sbjct: 583 AGKLHKVEMTIYDMNQN-KVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNV 641

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y  L+   +     ++A K  D+M+ +  +  D +++++L+  +     + +A ++   
Sbjct: 642 TYRLLILGLSKHGMIEIAVKFLDKMVLEG-IYPDRLSFDVLINAFSEKSRMSDALQLFNC 700

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           MK     P+  TY ++ NG  L RK       W  ++  C+V ++ V  +S L P     
Sbjct: 701 MKWLYMSPSSKTYSAMING--LIRKN------W--LQHSCDVLRDMV--ESGLEPKHTHY 748

Query: 479 EELLDA 484
             L++A
Sbjct: 749 IALINA 754



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 106/488 (21%), Positives = 197/488 (40%), Gaps = 91/488 (18%)

Query: 41  RVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           + ++F    +   S  D    NA+L    N G   + L L ++M      PD+ TY +++
Sbjct: 447 QAKEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILL 506

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
               R  +    V +L+ +LE G+   + T+  L+   +  G ++ A  + Q +      
Sbjct: 507 SGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEI------ 560

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
           +CK     D   Y+S   G          ++    +N +       K + PN   Y  LM
Sbjct: 561 ICKEGMYADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQN-------KVY-PNPASYNILM 612

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G++ +G +S ++ +   M R+      P +VTY  ++  L K G ++ A + L +M   
Sbjct: 613 HGHIKKGHLSRSIYLYKDMVRK---GIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLE 669

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKEL-------------------------------- 308
           G+  +R+++++L+  + ++ ++  A +L                                
Sbjct: 670 GIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHS 729

Query: 309 ---LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI------- 358
              LR+M +   +EP    Y  LI+      D  GA     EM A GI P ++       
Sbjct: 730 CDVLRDMVESG-LEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSIVR 788

Query: 359 ----------------------------SYTTLMKAFALSSQPKLANKV-FDEMLRDPRV 389
                                       ++TTLM    L  + K+++ +    ++    +
Sbjct: 789 GLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHG--LCKEAKISDALHLKSLMESCGL 846

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           K+D+V +N+L+ G C++  V +A  + E MK  G  PNV TY +L   I    +  E   
Sbjct: 847 KIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIYGTGRTLEGEK 906

Query: 450 LWKEIKER 457
           L  +I++R
Sbjct: 907 LLNDIEDR 914



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 8/218 (3%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R + DN + PD  TY T++        M  A  +  EM R G+  +  TY  L+ GYC+ 
Sbjct: 319 RMRGDNLA-PDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRN 377

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             ID+A  +L EM   A ++P  V+Y+ +++G +       A + ++ M   G +P   +
Sbjct: 378 GTIDEALRVLYEM-QVAGVKPSEVTYSAMLNGSV-----HEAFSVYDNMEKYGCSPDVYT 431

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L++          A +    ++  P   +D    N L+ G C  G ++EA  + E+M
Sbjct: 432 YRNLLRGLCKGGHLVQAKEFMSCIVHIPSA-IDQKTLNALLLGICNHGSLDEALDLCEKM 490

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
               F P++ TY  L +G     K   A++L + + E+
Sbjct: 491 VTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEK 528



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 46/253 (18%), Positives = 102/253 (40%), Gaps = 22/253 (8%)

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
           +N + +++L+  Y ++ ++  A   +  M D+   +    + N +++  + I +S     
Sbjct: 153 SNPLVFDLLVNAYVKEKRVVDASMAILFM-DNCGFKASAHACNAVLNALVEIGESKHVWF 211

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           F  E   R       +   ++ +  +    K A  +  +M        +++ +N ++  Y
Sbjct: 212 FLKEGLVRKFPLDVTTCNIVLNSMCIEGNLKGAKHMIHKM--KSCSLPNVITYNTILHWY 269

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK------ER 457
            + G  + A  ++E M++NG   +V TY  + + +   ++   A LL K ++      + 
Sbjct: 270 VKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDE 329

Query: 458 CEVKK--EGVNADSD-----------LPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
           C      +G   +S            L   LKP       L D   R     +AL ++  
Sbjct: 330 CTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYE 389

Query: 505 MEEHGIPPNKTKY 517
           M+  G+ P++  Y
Sbjct: 390 MQVAGVKPSEVTY 402


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 183/424 (43%), Gaps = 36/424 (8%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           + V++     G+     +L D+M   G K +   YN ++    R      +  VL+ +  
Sbjct: 137 SVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMES 196

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+   + T+  LV      GD+   E++   ++  R++V   +        +    G+ 
Sbjct: 197 GGVEPTVGTYTILVDGLSTAGDISKVESVFDEIK--RKNVAGDVYFYSAVINAYCRAGNV 254

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
               EVF++ + N I              PN R Y  L+ G+   G++     +L  M  
Sbjct: 255 RRASEVFDECVGNGIE-------------PNERTYGALINGFCKIGQIEAAEMLLTDM-- 299

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           Q     H + + + T++    + G +D+A ++ A M R+G+  +  TYN L  G C+  +
Sbjct: 300 QLRGVGH-NQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNR 358

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           ++ AK+LL  M ++  +E + VSY  LI       D   A   F +M  +G  P+ ++Y 
Sbjct: 359 MEDAKKLLHIMTENG-VESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYN 417

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            ++  +  S   + A +   EM +   V  D+  +  LV G+C  G V+ A R+ E MK+
Sbjct: 418 VMIDGYIKSGSIREAERFKKEMEKKGLVP-DVYTYAALVHGHCVNGKVDVALRLFEEMKQ 476

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  PNV  Y +L +G++   +  EA   +                D+ L   L PD+ L
Sbjct: 477 RGAKPNVVAYTALISGLAKEGRSEEAFQFY----------------DNMLAAGLTPDDTL 520

Query: 482 LDAL 485
              L
Sbjct: 521 YSML 524



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 22/285 (7%)

Query: 246 ASHPDHVT---YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           AS P  +T    + VV    KAG MD AR++L EM R GV  N   YN LL  Y +Q   
Sbjct: 125 ASCPGCITPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKND 184

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
            +  E+L+EM +   +EP V +Y IL+DG     D +   + F+E++ + +A     Y+ 
Sbjct: 185 ARVAEVLKEM-ESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSA 243

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++ A+  +   + A++VFDE + +  ++ +   +  L+ G+C++G +E A+ ++  M+  
Sbjct: 244 VINAYCRAGNVRRASEVFDECVGNG-IEPNERTYGALINGFCKIGQIEAAEMLLTDMQLR 302

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G   N   + ++ +G        +AL + K + ER  ++                D    
Sbjct: 303 GVGHNQIIFNTMIDGYCRHGMVDKALEI-KAVMERMGIQL---------------DVYTY 346

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           + LA    R      A +++  M E+G+  N   Y  + + +HS+
Sbjct: 347 NTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTL-ISIHSK 390



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 165/401 (41%), Gaps = 70/401 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V  ++ +V  L+ +GD   VESV  FD + ++           +   D   
Sbjct: 194 MESGGVEPTVGTYTILVDGLSTAGDISKVESV--FDEIKRK-----------NVAGDVYF 240

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+AV+NA    G  ++  ++FD+    G +P+  TY  +I    +  +      +L  + 
Sbjct: 241 YSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQ 300

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
             G+      F +++  Y   G ++ A  I   M R G          + L+ Y+     
Sbjct: 301 LRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMG----------IQLDVYT----- 345

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                               Y TL  G     R+ D  ++L  M
Sbjct: 346 ------------------------------------YNTLACGLCRVNRMEDAKKLLHIM 369

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               +N    ++V+YTT++S   K G M  AR++  +M   G   + +TYN+++ GY + 
Sbjct: 370 ---TENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKS 426

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             I +A+   +EM +   + PDV +Y  L+ G  +      AL  F EM+ RG  P  ++
Sbjct: 427 GSIREAERFKKEM-EKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVA 485

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           YT L+   A   + + A + +D ML       D + ++MLV
Sbjct: 486 YTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTL-YSMLV 525



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 56  PDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           PD   Y A+++  C N GK    L+LF++M + GAKP+V+ Y  +I   A+  R      
Sbjct: 446 PDVYTYAALVHGHCVN-GKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQ 504

Query: 115 VLERILEMGITLCMTTFQSLVAA 137
             + +L  G+T   T +  LV +
Sbjct: 505 FYDNMLAAGLTPDDTLYSMLVGS 527


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 182/410 (44%), Gaps = 33/410 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D A+ NA+L         K+  +L  +M +   +P V+T+ +++    +A R    + V 
Sbjct: 280 DAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVF 339

Query: 117 ERILE------MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
           +R+        +G+   +  F +L+      G  E   ++++ M+ G  +    +    L
Sbjct: 340 DRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCL 399

Query: 171 EDYSSENEGDDDDDDEVF-----EKLLPNSINPSSEPPLL-----------------PKT 208
            D      G+ D   E+F     E + PN I  ++    L                  K 
Sbjct: 400 ID-GFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKG 458

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              N+  YT L+  +     V++  R +        +   PD V Y +++S L  AG M+
Sbjct: 459 LKGNAATYTALISAFCG---VNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMN 515

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V++++   G   +R  YN+L+ G+C++ ++++  ELL EM ++  ++PD ++YN L
Sbjct: 516 DASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEM-EETGVKPDTITYNTL 574

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I       D A A     +M   G+ P+ ++Y  ++ A+          K+F EM    +
Sbjct: 575 ISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSK 634

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           V  + V +N+L++  CR   V+ A  ++E MK     PN  TY ++  G+
Sbjct: 635 VPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGV 684



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 170/381 (44%), Gaps = 39/381 (10%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           ++P+T  YN +++     G   +  +LF QM+E G +P+V+T N ++    +  R H  V
Sbjct: 389 NRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAV 448

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--------II 165
                +   G+     T+ +L++A+ G  ++  A   +Q   E     C         +I
Sbjct: 449 EFFNEMKGKGLKGNAATYTALISAFCGVNNINRA---MQCFEEMLSSGCSPDAVVYYSLI 505

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
             L +        G  +D   V  KL                 F+ +   Y  L+ G+  
Sbjct: 506 SGLCIA-------GRMNDASVVVSKLKLAG-------------FSLDRSCYNVLISGFCK 545

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
           + ++     +L  M   E+    PD +TY T++S L K G    A +V+ +M + G+  +
Sbjct: 546 KKKLERVYELLTEM---EETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPS 602

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
            +TY  ++  YC +  +D+  ++  EM   +K+ P+ V YNILID     +D   A++  
Sbjct: 603 VVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLM 662

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR--DPRVKVDIVAWNMLVEGY 403
            +M+ + + P   +Y  ++K        K+ +K F+ M R  +   + D +   +L E  
Sbjct: 663 EDMKVKRVRPNTTTYNAILKGV---RDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWL 719

Query: 404 CRMGLVEEAKRIIERMKENGF 424
             +G +E+ K  +E  +++ +
Sbjct: 720 SAVGEIEKLKHFVEGYQDSSY 740



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 30/333 (9%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+  ++ TL+ G    G+  D + +L  M+    N + P+ VTY  ++    KAG+ DRA
Sbjct: 355 PDVVLFNTLIDGLCKVGKEEDGLSLLEEMKM--GNINRPNTVTYNCLIDGFFKAGNFDRA 412

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  +M   GV  N IT N L+ G C+  ++ +A E   EM     ++ +  +Y  LI 
Sbjct: 413 HELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKG-LKGNAATYTALIS 471

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            F  +++   A+  F EM + G +P  + Y +L+    ++ +   A+ V  + L+     
Sbjct: 472 AFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSK-LKLAGFS 530

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE---- 446
           +D   +N+L+ G+C+   +E    ++  M+E G  P+  TY +L   IS   K G+    
Sbjct: 531 LDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTL---ISYLGKTGDFATA 587

Query: 447 ALLLWKEIKE---------------RCEVKK--EGVNADSDLPPPLK--PDEELLDALAD 487
           + ++ K IKE                C  K   EG+    ++    K  P+  + + L D
Sbjct: 588 SKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILID 647

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R     +A+ ++  M+   + PN T Y  I
Sbjct: 648 ALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAI 680



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 23/300 (7%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM------TRI 280
           GR  D  RM   +   E     P  VT+  +V+ L KA  +D A QV   +        +
Sbjct: 292 GRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWV 351

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
           GV  + + +N L+ G C+  + +    LL EM       P+ V+YN LIDGF    +   
Sbjct: 352 GVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDR 411

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A   F +M   G+ P  I+  TL+       +   A + F+EM +   +K +   +  L+
Sbjct: 412 AHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEM-KGKGLKGNAATYTALI 470

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
             +C +  +  A +  E M  +G  P+   Y SL +G+ +A +  +A ++  ++K     
Sbjct: 471 SAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLK----- 525

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                            D    + L     +     +  E++  MEE G+ P+   Y  +
Sbjct: 526 -----------LAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTL 574



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  +   +++ L +   + R  ++LAEM +  +  + +T+ IL+   C+  +ID+A ++ 
Sbjct: 280 DAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVF 339

Query: 310 REM-----ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTTL 363
             +     ++   +EPDVV +N LIDG   +      L+   EM+   I  P  ++Y  L
Sbjct: 340 DRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCL 399

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +  F  +     A+++F +M  +  V+ +++  N LV+G C+ G V  A      MK  G
Sbjct: 400 IDGFFKAGNFDRAHELFRQM-NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKG 458

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEI 454
              N ATY +L +          A+  ++E+
Sbjct: 459 LKGNAATYTALISAFCGVNNINRAMQCFEEM 489



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 7/237 (2%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           GR      ++G + +  +    PD    T +V  L        A +VL  + R+G   + 
Sbjct: 222 GRSFPDGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDA 281

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            + N LL    +   I +  ELL EM +  KI P VV++ IL++          AL  F+
Sbjct: 282 ASCNALLTWLGRGRDIKRMNELLAEM-EKRKIRPSVVTFGILVNHLCKARRIDEALQVFD 340

Query: 347 EMRAR------GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
            +R +      G+ P  + + TL+       + +    + +EM      + + V +N L+
Sbjct: 341 RLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLI 400

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +G+ + G  + A  +  +M E G  PNV T  +L +G+    +   A+  + E+K +
Sbjct: 401 DGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGK 457



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 33/331 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+V   +T+V  L   G              V R  +F +       K + A 
Sbjct: 419 MNEEGVQPNVITLNTLVDGLCKHGR-------------VHRAVEFFNEMKGKGLKGNAAT 465

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++A   +    + +Q F++M   G  PD + Y  +I     A R +    V+ ++ 
Sbjct: 466 YTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLK 525

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSENEG 179
             G +L  + +  L++ +     LE    ++  M E G +     I    L  Y  +  G
Sbjct: 526 LAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKP--DTITYNTLISYLGKT-G 582

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D     +V EK++   + PS                Y  ++  Y ++  V + +++ G M
Sbjct: 583 DFATASKVMEKMIKEGLRPSVV-------------TYGAIIHAYCSKKNVDEGMKIFGEM 629

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                +   P+ V Y  ++ AL +   +DRA  ++ +M    V  N  TYN +LKG   +
Sbjct: 630 --CSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDK 687

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILID 330
             + KA EL+  M ++A   PD ++  +L +
Sbjct: 688 KMLHKAFELMDRMVEEA-CRPDYITMEVLTE 717



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 114/290 (39%), Gaps = 34/290 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           ML SG  P    + +++S L  +G  +D  V   KL      ++  FS          D 
Sbjct: 489 MLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKL------KLAGFS---------LDR 533

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
           + YN +++      K ++  +L  +M E G KPD +TYN +I    +         V+E+
Sbjct: 534 SCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEK 593

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +++ G+   + T+ +++ AY    +++    I   M    +     +    L D    N 
Sbjct: 594 MIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNN 653

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
            D D    + E              +  K   PN+  Y  ++KG  ++  +     +   
Sbjct: 654 -DVDRAISLMED-------------MKVKRVRPNTTTYNAILKGVRDKKMLHKAFEL--- 696

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           M R  + A  PD++T   +   L   G +++ +  +        PA+  T
Sbjct: 697 MDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKHFVEGYQDSSYPASSQT 746


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 204/467 (43%), Gaps = 71/467 (15%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++    +G  +K L +FD++ E G  P V++Y  +I L  +  +    + V + + 
Sbjct: 432 YHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMME 491

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   M T+  L+  +V                              L+D++      
Sbjct: 492 VAGIKHNMKTYSMLINGFV-----------------------------RLKDWA------ 516

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   VFE ++ + + P             +  +Y  +++ +   G +   +R +  M+
Sbjct: 517 --NAFAVFEDVVKDGLKP-------------DVVLYNNIIRAFCGMGNMDRAIRTVKEMQ 561

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      P   T+  ++    ++G M RA ++   M   G      T+N L+ G  ++ 
Sbjct: 562 KERHR---PTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKC 618

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q++KA E+L EM+  A I P+  +Y  ++ G+  + D+  A  +F +++  G+     +Y
Sbjct: 619 QMEKAVEILDEMSL-AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTY 677

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S + + A  V  EM    ++  +   +N+L++G+ R G V EA  ++++MK
Sbjct: 678 EALLKACCKSGRMQSALAVTREM-SSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMK 736

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  P++ TY S  N      K G+     K I+E   ++  GV          KP+ +
Sbjct: 737 QEGVQPDIHTYTSFINACC---KAGDMQRATKTIQE---MEVVGV----------KPNIK 780

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
               L     RA+   KAL+    M+  G+ P+K  Y  +   + SR
Sbjct: 781 TYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSR 827



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 172/399 (43%), Gaps = 49/399 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   +Y  ++N    +GK  K L++   M   G K ++ TY+++I    R         V
Sbjct: 462 PSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAV 521

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDL 170
            E +++ G+   +  + +++ A+ G G+++ A   V+ M++ R     R    II     
Sbjct: 522 FEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPII----- 576

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEP------PLLPKT---------------- 208
             +     GD     E+F+ +  +   P+          L+ K                 
Sbjct: 577 --HGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAG 634

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +PN   YTT+M GY + G   DT +      + +      D  TY  ++ A  K+G M 
Sbjct: 635 ISPNEHTYTTIMHGYASLG---DTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQ 691

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V  EM+   +P N   YNIL+ G+ ++  + +A EL+++M  +  ++PD+ +Y   
Sbjct: 692 SALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEG-VQPDIHTYTSF 750

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+      D   A     EM   G+ P   +YTTL+  +A +S P+ A K F EM +   
Sbjct: 751 INACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEM-KSAG 809

Query: 389 VKVDIVAWNMLV----------EGYCRMGLVEEAKRIIE 417
           +K D   ++ L+          E Y   G+V   + +IE
Sbjct: 810 LKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICREMIE 848



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 146/345 (42%), Gaps = 56/345 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P S +YT+L+  Y   GR  D    L  +R+ ++       VTY+ +V    K    + A
Sbjct: 322 PTSHVYTSLIHAYA-VGR--DMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAA 378

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                E        N I Y  ++  +CQ   + +A+ L+REM ++  I+  +  Y+ ++D
Sbjct: 379 DHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEG-IDAPIDIYHTMMD 437

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLM----------KAFALSSQPKLAN--- 377
           G+ +I +    L  F+ ++  G  P+ ISY  L+          KA  +S   ++A    
Sbjct: 438 GYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKH 497

Query: 378 ----------------------KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
                                  VF+++++D  +K D+V +N ++  +C MG ++ A R 
Sbjct: 498 NMKTYSMLINGFVRLKDWANAFAVFEDVVKDG-LKPDVVLYNNIIRAFCGMGNMDRAIRT 556

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           ++ M++    P   T+  + +G + +     AL ++  ++             S   P +
Sbjct: 557 VKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRW------------SGCIPTV 604

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                L+  L + C       KA+EI+  M   GI PN+  Y  I
Sbjct: 605 HTFNALILGLVEKCQ----MEKAVEILDEMSLAGISPNEHTYTTI 645



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 31/343 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIV--------- 51
           ML +G++  +K W+   +       DG    V L++ +++      + D           
Sbjct: 504 MLINGFV-RLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQK 562

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
              +P T  +  +++  A  G  ++ L++FD M   G  P V T+N +I       +   
Sbjct: 563 ERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEK 622

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDL 170
            V +L+ +   GI+    T+ +++  Y   GD   A E   +   EG          L+L
Sbjct: 623 AVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEG----------LEL 672

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           + Y+ E            +  L  +   SS+   +P+    N+ +Y  L+ G+   G V 
Sbjct: 673 DVYTYEALLKACCKSGRMQSALAVTREMSSQK--IPR----NTFVYNILIDGWARRGDVW 726

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +   ++  M+++      PD  TYT+ ++A  KAG M RA + + EM  +GV  N  TY 
Sbjct: 727 EAAELMQQMKQE---GVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYT 783

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            L+ G+ +    +KA +  +EM   A ++PD   Y+ L+   +
Sbjct: 784 TLIHGWARASLPEKALKCFQEM-KSAGLKPDKAVYHCLMTSLL 825



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 32/224 (14%)

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +P    + +++  +    D   A   F  MRARGI PT   YT+L+ A+A+    + A  
Sbjct: 286 KPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 345

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
              +M ++  +++ +V +++LV G+ ++   E A    +  KE     N   YG++    
Sbjct: 346 CVRKM-KEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAH 404

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL----------------------- 475
             A    +A  L +E++E      EG++A  D+   +                       
Sbjct: 405 CQACNMTQAEALVREMEE------EGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKEC 458

Query: 476 --KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              P       L ++ ++     KALE+   ME  GI  N   Y
Sbjct: 459 GFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTY 502


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 152/341 (44%), Gaps = 26/341 (7%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+ AY   GD   AE ++  M +       +     +E Y        ++ + +F +
Sbjct: 141 FVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRR--YNNAEAIFRR 198

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +       S  P        P++  Y  ++K ++   +  +   +  ++  +E     PD
Sbjct: 199 M------QSGGPE-------PSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPD 245

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
              +  ++    KAG+ ++AR+V AEM   GVP   +TYN L+       ++ K    + 
Sbjct: 246 QKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSK----IY 301

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           +    A ++PDVVSY +LI  +        AL  F EM   GI PT  +Y  L+ AFA+S
Sbjct: 302 DQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAIS 361

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
              + A  VF  M RD R   DI ++  ++  Y     +E A+    R+K++GF PNV T
Sbjct: 362 GMVEQAKIVFKSMKRD-RCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVT 420

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
           YG+L  G +          L K IK   E+K  G+  +  +
Sbjct: 421 YGTLIKGYAKINN------LEKMIKRYEEMKVNGIRVNQTI 455



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/322 (20%), Positives = 137/322 (42%), Gaps = 18/322 (5%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++ A   LG   +  ++ + M++ G  P+V+++  +++   R  R +    +  R+   G
Sbjct: 144 LITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGG 203

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSENEGDDD 182
                 T+Q ++  +V     + AE +  ++    + V K  +++  +  Y  +  G+ +
Sbjct: 204 PEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYE 263

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPN----SRIYTTLMKGYMNEGRVSDT--VRML 236
              +VF ++    +  ++       +F  N    S+IY  + +  +    VS    +   
Sbjct: 264 KARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLISAY 323

Query: 237 GAMRRQE----------DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G  RR+E          D    P H  Y  ++ A   +G +++A+ V   M R     + 
Sbjct: 324 GKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDI 383

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            +Y  +L  Y     ++ A+   R +  D    P+VV+Y  LI G+  I++    +  + 
Sbjct: 384 CSYTTMLSAYVNASDMEGAENFFRRLKQDG-FRPNVVTYGTLIKGYAKINNLEKMIKRYE 442

Query: 347 EMRARGIAPTKISYTTLMKAFA 368
           EM+  GI   +   TT+M A+ 
Sbjct: 443 EMKVNGIRVNQTILTTIMDAYG 464



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 25/254 (9%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T  YN++++   N    K+  +++DQM   G +PDV++Y ++I    +A R+   + V E
Sbjct: 281 TVTYNSLMSFETNY---KEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFE 337

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELDLEDYSS 175
            +L+ GI      +  L+ A+   G +E A+ + ++M+  R   D+C     L     +S
Sbjct: 338 EMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNAS 397

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + EG ++     F +L  +              F PN   Y TL+KGY    ++++  +M
Sbjct: 398 DMEGAEN----FFRRLKQDG-------------FRPNVVTYGTLIKGY---AKINNLEKM 437

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +      + N    +    TT++ A  K      A     E+   G+  ++   NILL  
Sbjct: 438 IKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLSL 497

Query: 296 YCQQLQIDKAKELL 309
                ++D+A +L+
Sbjct: 498 AKTAEELDEANQLV 511



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G  P  KA++ ++   A SG    VE  K+    +KR R            PD  +
Sbjct: 339 MLDAGIRPTHKAYNILLDAFAISG---MVEQAKIVFKSMKRDR----------CSPDICS 385

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+A  N    +     F ++ + G +P+V+TY  +IK  A+ +    ++   E + 
Sbjct: 386 YTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMK 445

Query: 121 EMGITLCMTTFQSLVAAY 138
             GI +  T   +++ AY
Sbjct: 446 VNGIRVNQTILTTIMDAY 463



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 106/244 (43%), Gaps = 31/244 (12%)

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKI 358
           LQ  K  E+ ++ AD+A+ +    ++  L++    I+++  A++     R +  A P  +
Sbjct: 52  LQKRKKLEVFKDEADEAEQK----NWRRLMNE---IEETGSAVSVLRSERIKNEAIPKDL 104

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
              TL++ F    +  L +++ + +          + + ML+  Y ++G    A++++  
Sbjct: 105 VLGTLVR-FKQLKKWNLVSEILEWLRTQSWWNFSEMDFVMLITAYGKLGDFNRAEKVLNL 163

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK-------------------ERCE 459
           M + G+ PNV ++ +L       R+   A  +++ ++                   E  +
Sbjct: 164 MNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGSK 223

Query: 460 VKKEGVNADSDL---PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
            K+     DS L    P LKPD+++   +  +  +A  + KA ++ A M   G+P     
Sbjct: 224 FKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVT 283

Query: 517 YKKI 520
           Y  +
Sbjct: 284 YNSL 287


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 20/408 (4%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + +   P+T  Y  +L +     + ++   +F  M   G  P+V +Y+++I    R  + 
Sbjct: 44  LAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKV 103

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +L  +++ G    + T+ SL++     G L+ A  +   M         ++  + 
Sbjct: 104 DEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVL 163

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           ++ +S   +GD  +   +FE++L        E   +P  F      Y +L+ G+  +G  
Sbjct: 164 IDGFS--KKGDMGEAYRLFEEML--------EKGCIPTVFT-----YNSLLSGFSRKGEF 208

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
                +   M RQ      P+  T+  ++    K G M  A ++  EM  +G P + ++Y
Sbjct: 209 GRVQSLFKDMLRQ---GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSY 265

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L++G C + +  +A+ LLREM     + PD+VSYNILIDG+        A+  F E+ 
Sbjct: 266 NTLIRGMCSKGKPHEAQRLLREMIRSG-VGPDIVSYNILIDGYSKSGALDHAIKLFYEIP 324

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G+ P   SY+T++     + +   A  VF +M+ +     D      LV G CR   +
Sbjct: 325 KSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAP-DAAVVIPLVIGLCRGERL 383

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            E+  + + M +    P +  Y  L   +  A++  +   ++ E+ ER
Sbjct: 384 TESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTER 431



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 121/283 (42%), Gaps = 22/283 (7%)

Query: 248 HPDH--VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
           H +H  ++Y  ++  L K+G  D       +M   G   N  TY  LL+  CQ  + ++A
Sbjct: 12  HYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEA 71

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           + + R MA      P+V SY+ILI G         A    NEM   G  P  ++Y +L+ 
Sbjct: 72  RSVFRGMAAQG-CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS 130

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                 + K A  +F  M+       D V +N+L++G+ + G + EA R+ E M E G  
Sbjct: 131 GLCKMGKLKEAVDLFSRMVYRG-CPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI 189

Query: 426 PNVATYGSLANGISLARKPGEALLLWKE-IKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
           P V TY SL +G S   + G    L+K+ +++ C              P +     LLD 
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC-------------VPNIFTFNNLLDG 236

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
              +       R  LE    M   G PP+   Y  +   M S+
Sbjct: 237 FCKMGDMVEAHRLFLE----MRSLGCPPDVVSYNTLIRGMCSK 275


>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 567

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 174/408 (42%), Gaps = 63/408 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P   + N++L+     G+  K L +++QM   G  PD+ +Y +M+   C          F
Sbjct: 219 PSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNF 278

Query: 115 VLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           V E    M  + C   + T+ SL+  YV  GD+  A+ ++  M E               
Sbjct: 279 VKE----MERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSE--------------- 319

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                              K    NSR YT L+KGY   G++  
Sbjct: 320 -----------------------------------KGIPENSRTYTLLIKGYCKRGQMEQ 344

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             ++ G M   E N    +HV Y  ++ A   AG +D A ++   M ++G+  N +  N 
Sbjct: 345 AEKLFGCM--MEKNLFVDEHV-YGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNS 401

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GYC+   ++KA E+L  M  D  ++PD   YN L+DGF   +D   A    +EM  +
Sbjct: 402 LINGYCKLGHVNKAAEVLVSM-KDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNK 460

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+  T ++Y TL+K        + A  +++ ++    V  + V +  L++ + ++G  + 
Sbjct: 461 GVNFTVVTYNTLLKNLFHVGHVEHALHIWN-LMHKRGVAPNEVTYCTLLDAFFKVGTFDR 519

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           A  I +     GF  ++  Y ++  G     K  +A  ++ ++KE  E
Sbjct: 520 AMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELVE 567



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 149/345 (43%), Gaps = 33/345 (9%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           +F+P   ++  ++K Y  +G     + +   M +       P   +  +++S LV+ G  
Sbjct: 183 SFSPT--VFDMILKVYAEKGMTKFALCVFDNMGKC---GRVPSLRSCNSLLSNLVQNGEA 237

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
            +A  V  +M  +G+  +  +Y I++  YC++ ++D+A   ++EM + +  EP+VV+YN 
Sbjct: 238 FKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEM-ERSCCEPNVVTYNS 296

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LIDG++ + D  GA      M  +GI     +YT L+K +    Q + A K+F  M+ + 
Sbjct: 297 LIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGCMM-EK 355

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG---ISLARKP 444
            + VD   + +L+  YC  G V++A RI + M + G   N     SL NG   +    K 
Sbjct: 356 NLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKA 415

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            E L+  K+                     LKPD    + L D   +   F KA ++   
Sbjct: 416 AEVLVSMKDWN-------------------LKPDSYGYNTLLDGFCKQEDFIKAFKLCDE 456

Query: 505 MEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAA 549
           M   G+      Y  +       +F   H   A        KR  
Sbjct: 457 MHNKGVNFTVVTYNTLL----KNLFHVGHVEHALHIWNLMHKRGV 497


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 197/437 (45%), Gaps = 70/437 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP+  + + ++N   +LG+ +    +F ++ + G  P+ +T   ++K  C     K  L 
Sbjct: 103 KPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALH 162

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           F  + +L +G      ++ +L+      G+   A  +++ + EG+      +   D+  Y
Sbjct: 163 F-HDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQI-EGK------LVSTDVVMY 214

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           S+  +G   D      KL+ ++    SE  ++ K  +P      +L+ GY   G+  +  
Sbjct: 215 STIIDGLCKD------KLVNDAYELYSE--MITKRISPTVVTLNSLIYGYCIVGQFKEAF 266

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M  +  N   PD  T+  +V AL K G +  A+  +A M + GV  + +TY+ L+
Sbjct: 267 GLLREMVLKNIN---PDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLM 323

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GYC   +++KAK +                Y+I+I+GF  I     AL+ F EMR R I
Sbjct: 324 DGYCLVNEVNKAKHV----------------YSIVINGFCKIKMVDKALSLFYEMRCRRI 367

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEM------------------------------ 383
           AP  ++Y +L+     S +   A ++ DEM                              
Sbjct: 368 APDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIA 427

Query: 384 ----LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
               ++D  +++D+  +N+L++G C+ G +++A+ I + +   G+   V TY  + NG+ 
Sbjct: 428 LVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLC 487

Query: 440 LARKPGEALLLWKEIKE 456
           L     EA  L  ++++
Sbjct: 488 LEGLLNEAETLLSKMED 504



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 175/435 (40%), Gaps = 58/435 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P+    +T+V     +               VK    F D  +      +  +
Sbjct: 132 ILKMGYHPNTITLTTLVKGFCLNHK-------------VKEALHFHDHVLALGFHFNQVS 178

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++N    +G+ +  LQ+  Q+       DV+ Y+ +I    +    +    +   ++
Sbjct: 179 YGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMI 238

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELD-LEDYSSEN 177
              I+  + T  SL+  Y   G  + A  +++ M  +    DV      +D L       
Sbjct: 239 TKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIK 298

Query: 178 EGDDDDDDEVFEKLLPNSINPSS--EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E        + E ++P+ +  SS  +   L         +Y+ ++ G+     V   + +
Sbjct: 299 EAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSL 358

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              MR +      PD VTY +++  L K+G +  A +++ EM   G PA+ ITYN L+  
Sbjct: 359 FYEMRCRR---IAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDA 415

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   +DKA  L++++ D   I+ D+ +YNILIDG         A   F ++  +G   
Sbjct: 416 LCKNHHVDKAIALVKKIKDQG-IQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNL 474

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T  +YT                                    +++ G C  GL+ EA+ +
Sbjct: 475 TVWTYT------------------------------------IMINGLCLEGLLNEAETL 498

Query: 416 IERMKENGFYPNVAT 430
           + +M++NG  P+  T
Sbjct: 499 LSKMEDNGCVPDAVT 513



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 143/322 (44%), Gaps = 51/322 (15%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E N   P+ V+ + +++     G M  A  + A++ ++G   N IT   L+KG+C   ++
Sbjct: 98  EFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKV 157

Query: 303 DK-----------------------------------AKELLREMADDAKIEPDVVSYNI 327
            +                                   A ++LR++ +   +  DVV Y+ 
Sbjct: 158 KEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQI-EGKLVSTDVVMYST 216

Query: 328 LIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           +IDG     L++D   A   ++EM  + I+PT ++  +L+  + +  Q K A  +  EM+
Sbjct: 217 IIDGLCKDKLVND---AYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMV 273

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               +  D+  +N+LV+  C+ G ++EAK  I  M + G  P+V TY SL +G  L  + 
Sbjct: 274 L-KNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEV 332

Query: 445 GEALLLWK-EIKERCEVKKEGVNADSDLPPPLK-----PDEELLDALADICVRAAFFRKA 498
            +A  ++   I   C++K   V+    L   ++     PD    ++L D   ++     A
Sbjct: 333 NKAKHVYSIVINGFCKIKM--VDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYA 390

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
            E+V  M + G P +   Y  +
Sbjct: 391 WELVDEMRDSGQPADIITYNSL 412



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P  + +  ++S+LVK         +  ++   G+  N ++ +IL+  YC   Q+  A  +
Sbjct: 69  PSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSI 128

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             ++       P+ ++   L+ GF L      AL F + + A G    ++SY TL+    
Sbjct: 129 FAKIL-KMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLC 187

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              + + A ++  + +    V  D+V ++ +++G C+  LV +A  +   M      P V
Sbjct: 188 KIGETRAALQMLRQ-IEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTV 246

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            T  SL  G  +  +  EA  L +E+                +   + PD    + L D 
Sbjct: 247 VTLNSLIYGYCIVGQFKEAFGLLREM----------------VLKNINPDVYTFNILVDA 290

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +    ++A   +A M + G+ P+   Y  +
Sbjct: 291 LCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSL 322



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 135/334 (40%), Gaps = 71/334 (21%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P     N+++     +G+ K+   L  +M      PDV T+N+++  LC     K     
Sbjct: 244 PTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSG 303

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +   +++ G+   + T+ SL+  Y    ++  A+ +   +  G    CKI          
Sbjct: 304 I-AVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVING---FCKI---------- 349

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                          K++  +++   E  +  +  AP++  Y +L+ G    GR+S    
Sbjct: 350 ---------------KMVDKALSLFYE--MRCRRIAPDTVTYNSLIDGLCKSGRISYAWE 392

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ++  MR   D+    D +TY +++ AL K   +D+A  ++ ++   G+  +  TYNIL+ 
Sbjct: 393 LVDEMR---DSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILID 449

Query: 295 GYCQQLQI-----------------------------------DKAKELLREMADDAKIE 319
           G C+Q ++                                   ++A+ LL +M D+  + 
Sbjct: 450 GLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCV- 508

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           PD V+   +I      D +  A     EM ARG+
Sbjct: 509 PDAVTCETIIRALFENDKNERAEKLLREMIARGL 542



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 28/238 (11%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           +V++       Y+ V+N    +    K L LF +M      PD +TYN +I    ++ R 
Sbjct: 328 LVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRI 387

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
                +++ + + G    + T+ SL+ A      ++ A  +V+ +++          +LD
Sbjct: 388 SYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQG-------IQLD 440

Query: 170 LEDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           +  Y+        +G   D   +F+ LL    N +                YT ++ G  
Sbjct: 441 MYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWT-------------YTIMINGLC 487

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
            EG +++   +L  M   EDN   PD VT  T++ AL +    +RA ++L EM   G+
Sbjct: 488 LEGLLNEAETLLSKM---EDNGCVPDAVTCETIIRALFENDKNERAEKLLREMIARGL 542



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 345 FNEMRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           F+ M     AP+ I +  ++ +   L   P + +  +   L    +K +IV+ ++L+  Y
Sbjct: 59  FHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQ--LEFNGIKPNIVSLSILINCY 116

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           C +G +  A  I  ++ + G++PN  T  +L  G  L  K  EAL
Sbjct: 117 CHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEAL 161


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 138/297 (46%), Gaps = 25/297 (8%)

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG-SMDRARQVLAEMTRI------GVP 283
           D   +L  +  + D+   P+ VTY  V+ A  K G   +RA ++  EM         G+ 
Sbjct: 150 DYTFLLRELGNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIE 209

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            +  TYN LL   C+  Q+D A +++ EM     I P+VV+Y+ +IDG+        AL 
Sbjct: 210 QDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRK-HIMPNVVTYSTVIDGYAKAGRLDEALN 268

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
            FNEM+   I   ++SY TL+  +A   + + A  V  EM     +K D V +N L+ GY
Sbjct: 269 LFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEM-ESSGIKKDAVTYNALLGGY 327

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
            + G  EE KR+ E MK    +PN+ TY +L +  S      EA+ +++E       KK 
Sbjct: 328 GKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREF------KKA 381

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           G          LK D  L  AL D   +      A+  +  M + GI PN   Y  I
Sbjct: 382 G----------LKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSI 428



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/422 (20%), Positives = 158/422 (37%), Gaps = 115/422 (27%)

Query: 88  GAKPDVLTYNVMIKLCA-------RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140
           G KP+++TYN +I  C        RA+     + +   +L  GI   + T+ +L+ A   
Sbjct: 165 GLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCK 224

Query: 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS 200
            G +++A  I+  M                                              
Sbjct: 225 GGQMDLAFQIMSEMPR-------------------------------------------- 240

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
                 K   PN   Y+T++ GY   GR+ + + +   M+         D V+Y T++S 
Sbjct: 241 ------KHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGL---DRVSYNTLLSI 291

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD----- 315
             K G  + A  V  EM   G+  + +TYN LL GY +Q + ++ K +  EM  +     
Sbjct: 292 YAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPN 351

Query: 316 -----------------------------AKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
                                        A ++ DVV Y+ LID          A++F +
Sbjct: 352 LLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLD 411

Query: 347 EMRARGIAPTKISYTTLMKAFALS------SQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           EM   GI P  ++Y +++ AF  S      ++ ++ +K  +++++        +   +  
Sbjct: 412 EMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIK--------IFGQLAA 463

Query: 401 EGYCRMGLVEEAKR-------IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           E  C        ++       +  +M E    PNV T+ ++ N  S      +A +L +E
Sbjct: 464 EKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEE 523

Query: 454 IK 455
           ++
Sbjct: 524 LR 525



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 131/329 (39%), Gaps = 60/329 (18%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           SG  P++  ++ V+      G D    + ++FD     +  FS+  +    + D   YN 
Sbjct: 164 SGLKPNLVTYNAVIDACGKGGVDFN-RAAEIFD----EMNLFSEM-LYRGIEQDIFTYNT 217

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +L+A    G+     Q+  +M      P+V+TY+ +I   A+A R    + +   +    
Sbjct: 218 LLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS 277

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I L   ++ +L++ Y   G  E A            +VCK            E E     
Sbjct: 278 IGLDRVSYNTLLSIYAKLGRFEEA-----------LNVCK------------EMESSGIK 314

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
            D V                            Y  L+ GY  +G+  +  R+   M+ + 
Sbjct: 315 KDAV---------------------------TYNALLGGYGKQGKYEEVKRVFEEMKAER 347

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P+ +TY+T++    K G    A +V  E  + G+ A+ + Y+ L+   C+   ++
Sbjct: 348 ---IFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVE 404

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGF 332
            A   L EM  +  I P+VV+YN +ID F
Sbjct: 405 SAVSFLDEMTKEG-IRPNVVTYNSIIDAF 432



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 127/322 (39%), Gaps = 45/322 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R   +P+V  +STV+   A +G     E++ LF+ +     KF+   +      D  +
Sbjct: 238 MPRKHIMPNVVTYSTVIDGYAKAGRLD--EALNLFNEM-----KFASIGL------DRVS 284

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+  A LG+ ++ L +  +M   G K D +TYN ++    +  +   +  V E + 
Sbjct: 285 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 344

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              I   + T+ +L+  Y   G       + Q   E  R+  K   + D+  YS+     
Sbjct: 345 AERIFPNLLTYSTLIDVYSKGG-------LYQEAMEVFREFKKAGLKADVVLYSA----- 392

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKT---FAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                 + + L  N +  S+   L   T     PN   Y +++  +   G V D      
Sbjct: 393 ------LIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATE--S 444

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ-------VLAEMTRIGVPANRITYN 290
            +  +EDN      +           A   +R RQ       V  +M  + +  N +T++
Sbjct: 445 EVGDKEDN--QIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFS 502

Query: 291 ILLKGYCQQLQIDKAKELLREM 312
            +L    +    + A  LL E+
Sbjct: 503 AILNACSRCNSFEDASMLLEEL 524


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 191/435 (43%), Gaps = 71/435 (16%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL-------EMGI-TLCMTT 130
           +L ++M E G  PDV+T+N  I    RA +    VF   RI        E+G+    + T
Sbjct: 240 KLVERMTEKGLLPDVVTFNSRISALCRAGK----VFEASRIFRDMQMDGELGLPKPNVVT 295

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDDD 185
           F  ++  +   G +E A ++V+ M++G   V        LE Y++        G   +  
Sbjct: 296 FNLMLKGFCQEGMMEEARSLVETMKKGGNFV-------SLESYNTWLLGLLRNGKLLEGR 348

Query: 186 EVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTTLMKGY 223
            V ++++ N I P+                          ++     P++  YTTL+ GY
Sbjct: 349 SVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGY 408

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
            ++G+V +   +L  M R+     HP+  T  T++++L K G    A ++L +M      
Sbjct: 409 CSKGKVFEAKAILNEMIRK---GCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQ 465

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE---------------------PDV 322
            + +T NI++ G C+  +++KA E++ EM  D                         PDV
Sbjct: 466 LDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDV 525

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           ++Y  LI+G   +     A   F EM A+ + P  ++Y T +  F    +   A +V  +
Sbjct: 526 ITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKD 585

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M R+   K  +  +N L+ G    G + E   +++ M+E G +P++ TY ++ N +    
Sbjct: 586 MERNGCSKT-LQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGG 644

Query: 443 KPGEALLLWKEIKER 457
           K  +A  L  E+ ++
Sbjct: 645 KTKDATSLLHEMLDK 659



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 205/501 (40%), Gaps = 58/501 (11%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR- 108
           I +   P+T  +N ++ +           +LFD+M E G +P+  T  ++++   RA R 
Sbjct: 143 IQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRT 202

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
           K  L FV  +   MG  +    + +LV+++      + AE +V+ M E  + +   +   
Sbjct: 203 KQALEFVDGK---MGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTE--KGLLPDVVTF 257

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           +    +    G   +   +F  +  +          LPK   PN   +  ++KG+  EG 
Sbjct: 258 NSRISALCRAGKVFEASRIFRDMQMDG------ELGLPK---PNVVTFNLMLKGFCQEGM 308

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           + +   ++  M++  +  S     +Y T +  L++ G +   R VL EM   G+  N  +
Sbjct: 309 MEEARSLVETMKKGGNFVSLE---SYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYS 365

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YNI++ G C+   +  A+ L+  M  +  + PD V+Y  L+ G+        A    NEM
Sbjct: 366 YNIVMDGLCRNHMMLDARRLMDLMVSNG-VYPDTVTYTTLLHGYCSKGKVFEAKAILNEM 424

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             +G  P   +  TL+ +     +   A ++  +M  +   ++D V  N++V G CR G 
Sbjct: 425 IRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKM-NEKSYQLDTVTCNIVVNGLCRNGE 483

Query: 409 VEEAKRIIERMKENGF----------------------YPNVATYGSLANGISLARKPGE 446
           +E+A  ++  M  +G                        P+V TY +L NG+    K  E
Sbjct: 484 LEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEE 543

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           A             KK+ +     +   L PD    D       +      AL ++  ME
Sbjct: 544 A-------------KKKFIEM---MAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDME 587

Query: 507 EHGIPPNKTKYKKIYVEMHSR 527
            +G       Y  + + + S+
Sbjct: 588 RNGCSKTLQTYNSLILGLGSK 608



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 35/367 (9%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLV---FV 115
           +YN  L      GK  +   + D+M E G +P++ +YN VM  LC    R H+++    +
Sbjct: 330 SYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLC----RNHMMLDARRL 385

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REG---RRDVCKIIRELDLE 171
           ++ ++  G+     T+ +L+  Y   G +  A+ I+  M R+G       C  +      
Sbjct: 386 MDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLN---- 441

Query: 172 DYSSENEGDDDDDDEVFEKLLPNS-----------INPSSEPPLLPKTFAPNSRIYTTLM 220
             S   EG   + +E+ +K+   S           +N       L K     S ++T   
Sbjct: 442 --SLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWT--- 496

Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
            G  + G+ +    ++ ++     N   PD +TYTT+++ L K G ++ A++   EM   
Sbjct: 497 DGTNSLGKENPVAGLVNSIHNVSTNV--PDVITYTTLINGLCKVGKLEEAKKKFIEMMAK 554

Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
            +  + +TY+  +  +C+Q +I  A  +L++M  +      + +YN LI G         
Sbjct: 555 NLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNG-CSKTLQTYNSLILGLGSKGQIFE 613

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
                +EMR RGI P   +Y  ++       + K A  +  EML    V  ++ ++ +L+
Sbjct: 614 MYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILI 673

Query: 401 EGYCRMG 407
           + +C+ G
Sbjct: 674 KAFCKSG 680



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 94/448 (20%), Positives = 190/448 (42%), Gaps = 29/448 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G  P++ +++ V+        DG   +  + D      R+  D  + +   PDT  
Sbjct: 354 MVENGIEPNIYSYNIVM--------DGLCRNHMMLDA-----RRLMDLMVSNGVYPDTVT 400

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+   + GK  +   + ++M   G  P+  T N ++    +  RK     +L+++ 
Sbjct: 401 YTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMN 460

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
           E    L   T   +V      G+LE A  +V  M  +G   + K      L + S  N  
Sbjct: 461 EKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVN-SIHNVS 519

Query: 180 DDDDDDEVFEKLLPN--SINPSSEPP-----LLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
            +  D   +  L+     +    E       ++ K   P+S  Y T +  +  +G++S  
Sbjct: 520 TNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSA 579

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +R+L  M R   N       TY +++  L   G +     ++ EM   G+  +  TYN +
Sbjct: 580 LRVLKDMER---NGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNM 636

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +   C+  +   A  LL EM D   + P+V S+ ILI  F    D   A   F+   A  
Sbjct: 637 INCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFD--VALS 694

Query: 353 IAPTKIS-YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           +   K + Y+ +        +   A ++F+  L    +  + + +  L++  C+ G +++
Sbjct: 695 VCGHKEALYSLMFNELLAGGKLSDAKELFEASLERSLLSKNFM-YEDLIDKLCKDGRLDD 753

Query: 412 AKRIIERMKENGFYPNVATYGSLANGIS 439
           A  +++++ + G+  + +++  + +G+S
Sbjct: 754 AHGLLQKLIDKGYCFDHSSFIPVIDGLS 781


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 214/514 (41%), Gaps = 87/514 (16%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           G +P V A++ +++ L   G    VE ++++F+            ++  D+ P+   YN 
Sbjct: 120 GSIPSVIAYNCILTCL---GKKRRVEEALRIFE------------EMKRDAVPNVPTYNI 164

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++     GK    L++ D M   G  P+VLT N+MI    +A +      + E + +  
Sbjct: 165 LIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKV 224

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
            T    TF SL+    G G                                    G  DD
Sbjct: 225 CTPNAVTFSSLID---GLGKC----------------------------------GRVDD 247

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
              ++EK+L                  P + +YT+L++ +   GR  D  ++   M    
Sbjct: 248 AYSLYEKMLDCG-------------HVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH-- 292

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                PD     T +  + KAG  ++ R +  E+   G   +  +Y+IL+ G  +    +
Sbjct: 293 -TGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLAN 351

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +  EL   M +   +  D  +YN +IDGF        A     EM+ +G  PT ++Y ++
Sbjct: 352 ETYELFYAMKEQGCV-LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 410

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +   A   +   A  +F+E  +   +K+++V ++ L++G+ ++G ++EA  I+E + + G
Sbjct: 411 IDGLAKIDRLDEAYMLFEEA-KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKG 469

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PNV T+  L + +  A +  EAL+ ++ +K              DL  P  P++    
Sbjct: 470 LTPNVYTWNCLLDALVKAEEINEALICFQSMK--------------DLKCP--PNQITYS 513

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            L +   R   F KA      M++ G+ PN   Y
Sbjct: 514 ILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITY 547



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 137/348 (39%), Gaps = 67/348 (19%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P  +++S ++  L  +G     E+ +LF  + ++               DT AYNAV
Sbjct: 329 GFIPDARSYSILIHGLVKAGLAN--ETYELFYAMKEQ-----------GCVLDTHAYNAV 375

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     GK  K  QL ++M   G  P V+TY  +I   A+  R      + E     GI
Sbjct: 376 IDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGI 435

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
            L +  + SL+    GFG +            GR D   +I E                 
Sbjct: 436 KLNVVVYSSLID---GFGKV------------GRIDEAYLIME----------------- 463

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
                              L+ K   PN   +  L+   +    +++ +    +M+   D
Sbjct: 464 ------------------ELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMK---D 502

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
               P+ +TY+ +++ L +    ++A     EM ++G+  N ITY  ++ G  +   I +
Sbjct: 503 LKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILE 562

Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           A  L      +  I PD  SYN +I+G    + +  A   F E R +G
Sbjct: 563 ASGLFSRFKANGGI-PDSASYNAMIEGLSSANKAMDAYALFEETRLKG 609



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 19/275 (6%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           E N   P    Y T++     AG  D A  +L      G   + I YN +L    ++ ++
Sbjct: 82  EQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRV 141

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A  +  EM  DA   P+V +YNILID          AL   ++M   G+ P  ++   
Sbjct: 142 EEALRIFEEMKRDAV--PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNI 199

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++     + + + A  +F+ M  D     + V ++ L++G  + G V++A  + E+M + 
Sbjct: 200 MIDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDC 258

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G  P    Y SL        +  +   ++KE+                +     PD  L+
Sbjct: 259 GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM----------------VHTGCSPDLTLI 302

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           +   D   +A    K   +   +  HG  P+   Y
Sbjct: 303 NTYMDCVFKAGETEKGRALFREINAHGFIPDARSY 337



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG----ALTFFNEMRARG 352
           C+  ++D+A EL  ++  + K+ P   +YN +I G+     SAG    A       +A+G
Sbjct: 66  CKANRLDEAVELFEQLEQNRKV-PCAYAYNTMIMGY----GSAGKFDEAYGLLERQKAKG 120

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P+ I+Y  ++       + + A ++F+EM RD    V    +N+L++  CR G +  A
Sbjct: 121 SIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVP--TYNILIDMLCREGKLNAA 178

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             I + M+  G +PNV T   + + +  A+K  EA  +++ + ++
Sbjct: 179 LEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK 223



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 28/183 (15%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFAL----------SSQPKLANKVFDEMLRDPRVK 390
           A      MR     P   +YT L+    L          +++   A ++F+++ ++ +V 
Sbjct: 29  AFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRKVP 88

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
               A+N ++ GY   G  +EA  ++ER K  G  P+V  Y  +   +   R+  EAL +
Sbjct: 89  C-AYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 147

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           ++E+      K++ V           P+    + L D+  R      ALEI   ME  G+
Sbjct: 148 FEEM------KRDAV-----------PNVPTYNILIDMLCREGKLNAALEIRDDMERAGL 190

Query: 511 PPN 513
            PN
Sbjct: 191 FPN 193


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 188/422 (44%), Gaps = 29/422 (6%)

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
           RK  D  +  +S  D  +   ++      G  +K L+L +     G  P+ + YNV+I  
Sbjct: 244 RKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDG 303

Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
             R       + +L  +   G+   + T+ +L++     GDLE   +++  MRE R    
Sbjct: 304 YCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPP- 362

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA----PNSRIYTT 218
                 +++ Y+S           V + L     + S    +L + FA    P++  ++T
Sbjct: 363 ------NVQIYNS-----------VIDALC-KCRSASQALVVLKQMFAGGCDPDAITFST 404

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G   EGRV +  R+L    R E N   P+  +YT+++      G +  A  +L EM 
Sbjct: 405 LISGLCQEGRVQEAERLLRETTRWELN---PNLSSYTSLIHGFCVRGEVIVASNLLVEMM 461

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G   + +T+  L+ G     Q+ +A  L+RE     ++ PD   YN+LI G       
Sbjct: 462 ERGHTPDVVTFGALIHGLVVAGQVSEAL-LVREKMAARQLLPDANIYNVLISGLCKKKML 520

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A     EM  + + P K  YTTL+  F  +     A K+F E +    +  D+V +N 
Sbjct: 521 PAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIF-EFMEQKGIHPDVVGYNA 579

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKER 457
           +++GYC+ G++ EA   +  M++ G  P+  TY +L  G +       AL LL   +K R
Sbjct: 580 MIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRR 639

Query: 458 CE 459
           C+
Sbjct: 640 CQ 641



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 184/435 (42%), Gaps = 35/435 (8%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G LP V  + T++S L   GD   + S+      +  +R+   P       P+   YN+V
Sbjct: 324 GLLPTVVTYGTLMSWLGRKGDLEKIASL------LSEMRERRLP-------PNVQIYNSV 370

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++A        + L +  QM   G  PD +T++ +I    +  R      +L       +
Sbjct: 371 IDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWEL 430

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAET-IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
              ++++ SL+  +   G++ +A   +V+ M  G           D+  + +   G    
Sbjct: 431 NPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTP--------DVVTFGALIHG-LVV 481

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             +V E LL           +  +   P++ IY  L+ G   +  +     ++  M  Q 
Sbjct: 482 AGQVSEALL-------VREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQN 534

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
               HPD   YTT++   ++  S+D AR++   M + G+  + + YN ++KGYCQ   ++
Sbjct: 535 ---VHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMN 591

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A E +  M    +I PD  +Y  LI G+    + +GAL+   +M  R   P  ++Y++L
Sbjct: 592 EAVECMSTMRKVGRI-PDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSL 650

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +  +        A  +F  M     +  +++ + +L+    +   V  A    E M  N 
Sbjct: 651 INGYCKLGDTDAAECLFGSM-ESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQ 709

Query: 424 FYPNVATYGSLANGI 438
             PN  T  SL  G+
Sbjct: 710 CSPNDYTLHSLVTGL 724



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 148/326 (45%), Gaps = 26/326 (7%)

Query: 216 YTT--LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
           Y+T  +++G   EG V   ++++ A   +      P+ V Y  ++    + G + R   +
Sbjct: 260 YSTCVMVRGLCLEGLVEKGLKLIEA---RWGAGCVPNAVFYNVLIDGYCRRGDVGRGILL 316

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM   G+    +TY  L+    ++  ++K   LL EM +  ++ P+V  YN +ID   
Sbjct: 317 LGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRER-RLPPNVQIYNSVIDALC 375

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               ++ AL    +M A G  P  I+++TL+       + + A ++  E  R   +  ++
Sbjct: 376 KCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRW-ELNPNL 434

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
            ++  L+ G+C  G V  A  ++  M E G  P+V T+G+L +G+ +A +  EALL+ ++
Sbjct: 435 SSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREK 494

Query: 454 IKER--------CEVKKEGVNADSDLPPP-----------LKPDEELLDALADICVRAAF 494
           +  R          V   G+     LP             + PD+ +   L D  +R   
Sbjct: 495 MAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNES 554

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
             +A +I   ME+ GI P+   Y  +
Sbjct: 555 LDEARKIFEFMEQKGIHPDVVGYNAM 580



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 105/270 (38%), Gaps = 20/270 (7%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPA---NRITYNILLKGYCQQLQIDKAKELLR 310
           ++ ++  L +AG  D     L +M+  G  A    R     L+  Y       KA E+ +
Sbjct: 153 HSALLRLLARAGRFDAVDATLRDMSLAGAAAAVPTRACLGALVATYADAGMEAKAAEMCQ 212

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
              +     P     N L+   +       A   ++EM A        S   +++   L 
Sbjct: 213 RAREHHGTLPGATHTNRLLRLLVERRRWDDARKLYDEMLAEESGADDYSTCVMVRGLCLE 272

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
              +   K+ +       V  + V +N+L++GYCR G V     ++  M+  G  P V T
Sbjct: 273 GLVEKGLKLIEARWGAGCVP-NAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVT 331

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           YG+L + +       +   L  E++ER             LPP ++    ++DAL   C 
Sbjct: 332 YGTLMSWLGRKGDLEKIASLLSEMRER------------RLPPNVQIYNSVIDALCK-CR 378

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            A+   +AL ++  M   G  P+   +  +
Sbjct: 379 SAS---QALVVLKQMFAGGCDPDAITFSTL 405


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 180/418 (43%), Gaps = 81/418 (19%)

Query: 33  KLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92
           KLFDV+            + D   D  AY  +L+A +  GK  + +++F++M+E G  P 
Sbjct: 208 KLFDVIP-----------LDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPS 256

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152
           ++TYNVM+ +  +  R        ++ILE+                            + 
Sbjct: 257 LVTYNVMLDVYGKMGRS------WDKILEL----------------------------LD 282

Query: 153 AMREGRRDVCKIIRELDLEDYSSEN-------EGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            MR          R LD ++++          EG  D+  E F  L        SE    
Sbjct: 283 EMRS---------RGLDFDEFTCSTVLSACGREGLIDEAREFFSGL-------KSE---- 322

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
              + P +  Y  L+  +   G  S+ + +L  M   E+N   PD VTY  VV+A V+AG
Sbjct: 323 --GYKPGTVTYNALLHVFGKAGIFSEALSVLSEM---EENNCPPDAVTYNEVVAAYVRAG 377

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
             +    V+  M   G+  N +TY  ++  Y +   IDKA E+  +M +   + P+V +Y
Sbjct: 378 FHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCV-PNVATY 436

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N ++        S   +     M+  G +P  I++ T++         K  N+VF EM +
Sbjct: 437 NAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREM-K 495

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +   + D   +N L+  Y R G   +A ++ E M + GF P + TY +L N  +LAR+
Sbjct: 496 NCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLN--ALARR 551



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 185/428 (43%), Gaps = 39/428 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  ++NA   +G   K L++FDQM E G  P+V TYN ++ +  + S    ++ +
Sbjct: 396 PNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKI 455

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +   G +    T+ +++A     G   + + + Q  RE +   C    E D + +++
Sbjct: 456 LGHMKLNGCSPNHITWNTMLAM---CGKKGMHKYVNQVFREMKN--CGF--EPDRDTFNT 508

Query: 176 -----ENEGDDDDDDEVFEKLLPNSINP-------------------SSEPPLLP---KT 208
                   G ++D  ++ E+++    +P                   ++E  +L    K 
Sbjct: 509 LISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKG 568

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P+   Y+ ++  Y   G V   + M+   +   D    P  +   T+V A  K  S+ 
Sbjct: 569 FRPSETSYSLMVHSYAKGGNVKG-IEMIE--KSIYDGDIFPSWMLLRTLVLANFKCRSLT 625

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
              +    + + G   + +  N +L  + +    D+A E+LR +  DA ++PD+V++N L
Sbjct: 626 GMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLR-LIHDAGLQPDLVTHNSL 684

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +D +    D   A      ++  G  P  +SY T++K F      +   ++  EM     
Sbjct: 685 MDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEM-TSIG 743

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V   I  +N  + GY   G+  E   +I  M  +   PN  TY  +A+G   AR+  EA+
Sbjct: 744 VGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEAI 803

Query: 449 LLWKEIKE 456
               +IK+
Sbjct: 804 DFVSKIKD 811



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 187/443 (42%), Gaps = 42/443 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDD-------------GPVESVKLFDVVVKRVRKFSD 47
           M   G +P+   ++T+++     GD              G V +V  ++ V+  + K S 
Sbjct: 389 MASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSL 448

Query: 48  PD---------IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            +          ++   P+   +N +L  C   G  K   Q+F +M   G +PD  T+N 
Sbjct: 449 SEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNT 508

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           +I    R    +    + E +++ G + C+ T+ +L+ A    GD + AE+++  MR   
Sbjct: 509 LISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKG 568

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
               +    L +  Y+   +G +    E+ EK             +      P+  +  T
Sbjct: 569 FRPSETSYSLMVHSYA---KGGNVKGIEMIEK------------SIYDGDIFPSWMLLRT 613

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+        ++   R   A+++       PD V   +++S   K    DRA ++L  + 
Sbjct: 614 LVLANFKCRSLTGMERAFQALQKH---GYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIH 670

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+  + +T+N L+  Y +     KA+E+LR M   +  +PD+VSYN +I GF      
Sbjct: 671 DAGLQPDLVTHNSLMDMYARGGDCWKAEEVLR-MLQTSGGKPDLVSYNTVIKGFCRKGLM 729

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
              +   +EM + G+ P   +Y T +  +A        N V   M+     + + + + +
Sbjct: 730 QEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVH-NCRPNELTYKI 788

Query: 399 LVEGYCRMGLVEEAKRIIERMKE 421
           + +GYC+    +EA   + ++K+
Sbjct: 789 VADGYCKARRYDEAIDFVSKIKD 811


>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 191/424 (45%), Gaps = 46/424 (10%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           G+  + LQLFD M   G  P V  ++V+I    R    H  + +L  + E G+T  +  F
Sbjct: 291 GRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIF 350

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
             L++A+   G +      V    E R  V  +I    L  Y   N+G  D+       +
Sbjct: 351 TKLISAFPDRGVIAKLLEEVPGGEEERTLV--LIYNAVLTCYV--NDGLMDEACRFLRMM 406

Query: 192 LPNSINPSSEPP----LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           + +  +   +       + K   PN   ++ ++ G +   ++   + +   M++  D   
Sbjct: 407 IQSKASGDVQMDGFFNKVKKLVFPNGASFSIVINGLLKNDQLDLALSLFNDMKQFVD--- 463

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P  + Y  ++++L  +  ++ +R++L EM   GV     TYN +    C++  +  A +
Sbjct: 464 RPSVLIYNNLINSLCDSNRLEESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAID 523

Query: 308 LLR-------------------EMAD-----------DAKIE----PDVVSYNILIDGFI 333
           +L+                   E+ D           D+ ++    PD+VSY+  I G I
Sbjct: 524 MLKGMRACGHEPWIKNSTLLVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLI 583

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            I +   AL  F+++ +RG  P  ++   LM+    + + + A K+ DE++        +
Sbjct: 584 QIQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFP-SV 642

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           V +N+L++ +C+ G V++A  ++ RM      PNV TY +L +G   A +P +ALL+W E
Sbjct: 643 VTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNE 702

Query: 454 IKER 457
           ++ +
Sbjct: 703 MERK 706



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 184/439 (41%), Gaps = 40/439 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+ A+++ V+N      +    L LF+ M +F  +P VL YN +I     ++R      +
Sbjct: 430 PNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESREL 489

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDL 170
           L  + E G+     T+ S+        D+  A  +++ MR        ++   +++EL  
Sbjct: 490 LREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELC- 548

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            D+    E  +  D  V +  LP+ ++                  Y+  + G +   ++ 
Sbjct: 549 -DHGMAIEACNFLDSMVQQGFLPDIVS------------------YSAAIGGLI---QIQ 586

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  R L            PD V    ++  L KA  +  A ++L E+   G   + +TYN
Sbjct: 587 ELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYN 646

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           +L+  +C+   +DKA  LL  M+ + + EP+V++Y+ L+DGF   +    AL  +NEM  
Sbjct: 647 LLIDSWCKNGSVDKAMALLSRMSGEDR-EPNVITYSTLVDGFCRAERPDDALLVWNEMER 705

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P +I++  L+       +P  A     EM     +K D   +  L+  +     + 
Sbjct: 706 KGCFPNQIAFMALIYGLCKCCRPTTALHYLREM-EQKDMKPDSFIYIALISSFLSDMDLA 764

Query: 411 EAKRIIERMKENGFYPNV--ATYGSLANGISLARKPG------EALLLWKEIKERCEVKK 462
            A  I + M  +G++P      Y  + + I    K        + L+   ++   C VK 
Sbjct: 765 SAFEIFKEMVYSGYFPESHDKNYSIVMDAIDKFSKDHRTSSGIQVLMEEGKLPTHCAVKS 824

Query: 463 EGV--NADSDLPPPLKPDE 479
           +G     D D   PL P E
Sbjct: 825 KGFKEGLDDDGHAPLSPTE 843



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 144/322 (44%), Gaps = 41/322 (12%)

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T L++ Y N  R  + +R+   MR +     H      + +  +  K G +D+A +++  
Sbjct: 212 TPLLQAYCNARRFDEALRVYNVMREKGWVDGH----VCSMLALSFSKWGDVDKAFELVER 267

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+  N  T+ +L+ G+ ++ ++D+A +L   M       P V  +++LI G     
Sbjct: 268 MEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCR-VGFTPPVSLFDVLIGGLCRNG 326

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           DS  AL+  +EM+  G+ P    +T L+ AF       +  K+ +E+      +  ++ +
Sbjct: 327 DSHRALSLLSEMKEFGVTPDVGIFTKLISAFP---DRGVIAKLLEEVPGGEEERTLVLIY 383

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKE---------NGF--------YPNVATYGSLANGIS 439
           N ++  Y   GL++EA R +  M +         +GF        +PN A++  + NG+ 
Sbjct: 384 NAVLTCYVNDGLMDEACRFLRMMIQSKASGDVQMDGFFNKVKKLVFPNGASFSIVINGLL 443

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
              +   AL L+ ++K+  +             P +     L+++L D    +    ++ 
Sbjct: 444 KNDQLDLALSLFNDMKQFVD------------RPSVLIYNNLINSLCD----SNRLEESR 487

Query: 500 EIVACMEEHGIPPNKTKYKKIY 521
           E++  M+E G+ P    Y  IY
Sbjct: 488 ELLREMKESGVEPTHFTYNSIY 509



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 13/232 (5%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P +F P +  +  L++   + G   +   +   MR +      P+   Y  ++ AL K+G
Sbjct: 132 PCSFTPGALGF--LIRCLGHAGLAREAHHLFDEMRLK--GLCVPNDYCYNCLLEALSKSG 187

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            +D     L EM   G   ++ T   LL+ YC   + D+A  +   M +   ++  V S 
Sbjct: 188 EVDLIEARLEEMKGFGWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKGWVDGHVCS- 246

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
            +L   F    D   A      M   G+   + ++  L+  F    +   A ++FD M R
Sbjct: 247 -MLALSFSKWGDVDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCR 305

Query: 386 ---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
               P V +    +++L+ G CR G    A  ++  MKE G  P+V  +  L
Sbjct: 306 VGFTPPVSL----FDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFTKL 353



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/332 (18%), Positives = 123/332 (37%), Gaps = 67/332 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G+ P +K  + +V  L   G    +E+    D +V++              PD  +
Sbjct: 528 MRACGHEPWIKNSTLLVKELCDHG--MAIEACNFLDSMVQQ-----------GFLPDIVS 574

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A +     + +  + LQLF  ++  G  PDV+  N++++   +A R      +L+ I+
Sbjct: 575 YSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIV 634

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    + T+  L+ ++   G ++ A  ++  M                        G+
Sbjct: 635 VKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRM-----------------------SGE 671

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           D +                           PN   Y+TL+ G+    R  D + +   M 
Sbjct: 672 DRE---------------------------PNVITYSTLVDGFCRAERPDDALLVWNEME 704

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R+      P+ + +  ++  L K      A   L EM +  +  +   Y  L+  +   +
Sbjct: 705 RK---GCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQKDMKPDSFIYIALISSFLSDM 761

Query: 301 QIDKAKELLREMADDAKI-EPDVVSYNILIDG 331
            +  A E+ +EM       E    +Y+I++D 
Sbjct: 762 DLASAFEIFKEMVYSGYFPESHDKNYSIVMDA 793


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 147/316 (46%), Gaps = 32/316 (10%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y T++      G   D  + L      +     PD +T+ ++++   +    + +
Sbjct: 267 PNLITYNTIIDACGKGG--VDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDS 324

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           ++V AEM R G+  +  TYN L+   C+  Q++ A  ++  M     I P+VV+Y+ +ID
Sbjct: 325 QRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLK-NISPNVVTYSTMID 383

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-- 388
           G+  +     A+  +++M+  G+ P ++SY TL+  +A     KL    FD+ L   +  
Sbjct: 384 GYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYA-----KLGR--FDDALTACKDM 436

Query: 389 ----VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               +K D+V +N L++ Y + G  ++A  + ++MK  G  PNV TY +L +  S A   
Sbjct: 437 ERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMH 496

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            +A  ++ E K                   LKPD  L  +L D C +      A+ ++  
Sbjct: 497 QDATSIFVEFKR----------------AGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQE 540

Query: 505 MEEHGIPPNKTKYKKI 520
           M + GI PN   Y  +
Sbjct: 541 MTQAGIQPNIVTYNSL 556



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 113/513 (22%), Positives = 208/513 (40%), Gaps = 115/513 (22%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           ++G+  +V A+S +VS    SG     E++K+F  + K           +  KP+   YN
Sbjct: 227 KAGFGNNVYAYSAMVSAYGRSGR--CREALKVFQAMKK-----------AGCKPNLITYN 273

Query: 63  AVLNACANLG-KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS----RKHLLVFVLE 117
            +++AC   G   KK L +F++M + G +PD +T+N +I +C+R S     + +   +  
Sbjct: 274 TIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQR 333

Query: 118 RILEMGI--------TLC-----------------------MTTFQSLVAAYVGFGDLEI 146
           R +E  I         +C                       + T+ +++  Y   G  E 
Sbjct: 334 RGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEE 393

Query: 147 AETIVQAMRE--------------------GRRD----VCKIIRELDLE-DYSSEN---- 177
           A  +   M+E                    GR D     CK +  + L+ D  + N    
Sbjct: 394 AIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALID 453

Query: 178 ----EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               +G   D   +F+K+    +              PN   Y+ L+  Y   G   D  
Sbjct: 454 AYGKQGKYKDAAGLFDKMKAEGL-------------VPNVLTYSALIDAYSKAGMHQDAT 500

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +    +R       PD V Y++++ +  K G ++ A  +L EMT+ G+  N +TYN L+
Sbjct: 501 SIFVEFKRA---GLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 557

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL---IDDSAG---ALTFFNE 347
             Y +  Q+D  +     M  +   +    S  I+          +D  G   A++ F+E
Sbjct: 558 DAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHE 617

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M+  G+ P  ++++ ++ A +  S  + A+ + ++M R     V  +A  +L      MG
Sbjct: 618 MQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQM-RFFDSWVYGIAHGLL------MG 670

Query: 408 LVE----EAKRIIERMKENGFYPNVATYGSLAN 436
           L E    EA+R+ + +    +    A Y +L +
Sbjct: 671 LREHVWVEAQRLFDEIARMDYATGAAFYNALTD 703



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 27/299 (9%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           GR+      L    R +      +   Y+ +VSA  ++G    A +V   M + G   N 
Sbjct: 210 GRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNL 269

Query: 287 ITYNILLKGYCQQLQID--KAKELLREMADDAKIEPDVVSYNILI---DGFILIDDSAGA 341
           ITYN ++   C +  +D  KA ++  EM  +  +EPD +++N LI       L +DS   
Sbjct: 270 ITYNTIIDA-CGKGGVDLKKALDIFEEMQKEG-VEPDRITFNSLIAVCSRGSLWEDSQ-- 325

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
              F EM+ RGI     +Y TL+ A     Q +LA  +   M R   +  ++V ++ +++
Sbjct: 326 -RVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSM-RLKNISPNVVTYSTMID 383

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           GY ++G  EEA  +   MKE+G  P+  +Y +L +  +   +  +AL   K++ ER    
Sbjct: 384 GYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDM-ERV--- 439

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                        LK D    +AL D   +   ++ A  +   M+  G+ PN   Y  +
Sbjct: 440 ------------GLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSAL 486


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 211/481 (43%), Gaps = 49/481 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PDT  YN VL       + +K  +L ++M      P+ +T+   I+  C      H  V 
Sbjct: 208 PDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHA-VQ 266

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM---------REGRRDVCKII 165
           +LER+   G T  +  + +LV  +   G ++ A  ++  M             + +C   
Sbjct: 267 LLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNAALKGLCMAE 326

Query: 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNS------INPSSEPPLLPKTFA--PNSRIYT 217
           R  D+ +  +E    D   +E    +L +       ++ + E     + +   P+  IY 
Sbjct: 327 RWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYN 386

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           TL+  +  +GRV D + +L +M        +PD +++   + AL +        +++A+M
Sbjct: 387 TLINYFSEQGRVDDALMLLDSM------LCNPDTISFNAALKALCRTERWYDVEELIAQM 440

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
            R   P   +T+NIL+   CQ   ++ A E+  +M    +  PD+V+Y+ LI+GF     
Sbjct: 441 LREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPK-YRCTPDIVTYSSLINGFSEQGL 499

Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
              A+  F  M  +   P   SY  ++K    +++ + A ++   M R      + + +N
Sbjct: 500 VESAIELFQSMPCK---PDIFSYNAVLKGLCRAARWEDAGELIANMARK-DCPPNEITFN 555

Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           +L+   C+ G  + A  + ++M E G  P++ TY +L NG S   +  +AL L   +   
Sbjct: 556 ILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTMS-- 613

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              K + ++ +S               L  +C RA  +++A EIVA M     PPN+  +
Sbjct: 614 --CKPDAISYNS--------------TLKGLC-RAERWKEAEEIVAEMLRKKCPPNEVTF 656

Query: 518 K 518
           K
Sbjct: 657 K 657



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 120/523 (22%), Positives = 217/523 (41%), Gaps = 59/523 (11%)

Query: 19  RLAASGDDGPVESVKLFDVVVKRV---RKFSDPDIVSDS-----KPDTAAYNAVLNACAN 70
           RL  S       +V   ++++K++   R+ +D + V D+       D  ++N ++     
Sbjct: 97  RLVGSMPSSEPPAVIACNILIKKLCAHRRLADAERVLDALKESGSADAVSHNTLVAGYCR 156

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
            G+     ++ +     GA  +V+TY  +I    R+ R   L   L  I  M +     T
Sbjct: 157 DGRLADAERVLEAAKVSGAA-NVVTYTALINGYCRSGR---LADALNLIASMPVAPDTYT 212

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           + +++    G    E AE +++ M        ++     +  +     G  D   ++ E+
Sbjct: 213 YNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQN--GLLDHAVQLLER 270

Query: 191 LLPNSINPSSEPPLLPK-TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           +              P+    P+  IY+TL+ G+  +GRV D + +L  M         P
Sbjct: 271 M--------------PRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTM------LCKP 310

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           + V Y   +  L  A       +++AEM R   P N  T+++L    CQ   +D A E++
Sbjct: 311 NTVCYNAALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVV 370

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            +M       PDVV YN LI+ F        AL   + M      P  IS+   +KA   
Sbjct: 371 EQM-QKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSMLCN---PDTISFNAALKALCR 426

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           + +     ++  +MLR+    +++  +N+L++  C+ GLV  A  + E+M +    P++ 
Sbjct: 427 TERWYDVEELIAQMLREDCPLIEMT-FNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIV 485

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY SL NG S       A+ L++ +                   P KPD    +A+    
Sbjct: 486 TYSSLINGFSEQGLVESAIELFQSM-------------------PCKPDIFSYNAVLKGL 526

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
            RAA +  A E++A M     PPN+  +  +   +  + F  +
Sbjct: 527 CRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADR 569



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 177/406 (43%), Gaps = 51/406 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPV--------ESVKLFDVVVKRV---RKFSD 47
           M R G  P V  +ST+V+  +  G  DD  V         +   ++  +K +    ++ D
Sbjct: 271 MPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNAALKGLCMAERWKD 330

Query: 48  PD------IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
                   +  D  P+ A ++ + +     G     +++ +QM ++G +PDV+ YN +I 
Sbjct: 331 VGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLIN 390

Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
             +   R    + +L+ +L    T+        +     + D+E  E I Q +RE     
Sbjct: 391 YFSEQGRVDDALMLLDSMLCNPDTISFNAALKALCRTERWYDVE--ELIAQMLRED---- 444

Query: 162 CKIIR-ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK-TFAPNSRIYTTL 219
           C +I    ++   S    G  +   EVFE++              PK    P+   Y++L
Sbjct: 445 CPLIEMTFNILIDSLCQHGLVNHAIEVFEQM--------------PKYRCTPDIVTYSSL 490

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G+  +G V   + +  +M         PD  +Y  V+  L +A   + A +++A M R
Sbjct: 491 INGFSEQGLVESAIELFQSM------PCKPDIFSYNAVLKGLCRAARWEDAGELIANMAR 544

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
              P N IT+NIL+   CQ+   D+A E+ ++M +     PD+ +YN LI+GF       
Sbjct: 545 KDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGST-PDIFTYNALINGFSEQGRLD 603

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
            AL   + M  +   P  ISY + +K    + + K A ++  EMLR
Sbjct: 604 DALNLLSTMSCK---PDAISYNSTLKGLCRAERWKEAEEIVAEMLR 646



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 139/315 (44%), Gaps = 49/315 (15%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +R++G+M   E     P  +    ++  L     +  A +VL  +   G  A+ +++N L
Sbjct: 96  LRLVGSMPSSEP----PAVIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNTL 150

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIE--PDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           + GYC+  ++  A+ +L    + AK+    +VV+Y  LI+G+      A AL     M  
Sbjct: 151 VAGYCRDGRLADAERVL----EAAKVSGAANVVTYTALINGYCRSGRLADALNLIASM-- 204

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
             +AP   +Y T++K    + Q + A ++ +EM+R+     + V +   +  +C+ GL++
Sbjct: 205 -PVAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRN-NCHPNEVTFATQIRSFCQNGLLD 262

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL-------------------- 450
            A +++ERM   G  P+V  Y +L NG S   +  +AL+L                    
Sbjct: 263 HAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNAALKGL 322

Query: 451 -----WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
                WK++    E+  E V  D        P+E     L     +      A+E+V  M
Sbjct: 323 CMAERWKDVG---ELIAEMVRKDC------PPNEATFSMLTSCLCQHGLVDCAMEVVEQM 373

Query: 506 EEHGIPPNKTKYKKI 520
           +++G  P+   Y  +
Sbjct: 374 QKYGCRPDVVIYNTL 388


>gi|326487712|dbj|BAK05528.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 455

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 3/231 (1%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN+ +Y  L+K Y+  G      R+L  MR        P+ VTY+T++  L +AG M  
Sbjct: 197 APNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKE 256

Query: 270 ARQVLAEMT-RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           A ++   M  +  +  +++TYN+++ G+C+  Q++KA+ +   M  + + EP+  +Y  L
Sbjct: 257 AFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKN-ECEPNAFNYATL 315

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G     D   A   F EMR+ G+ P  +SYT L+              +  EM R+  
Sbjct: 316 INGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEM-REKG 374

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            K D+V +N+L+EG C+ G + E   ++ R+ E G   NVA+Y  + N + 
Sbjct: 375 CKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLC 425



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 4/211 (1%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEM---TRIGVPANRITYNILLKGYCQQLQIDKA 305
           P+   Y  ++   VK G  + A +VL EM   T   V  N +TY+ LL G C+  ++ +A
Sbjct: 198 PNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEA 257

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            EL   M +   I PD ++YN++IDGF  +     A T F  MR     P   +Y TL+ 
Sbjct: 258 FELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNECEPNAFNYATLIN 317

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                   + A  VF+EM R   V+ D V++  L+   CR G V+E   ++  M+E G  
Sbjct: 318 GHCKKGDVENAKLVFEEM-RSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCK 376

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKE 456
            +V TY  L  G+    +  E + L   + E
Sbjct: 377 ADVVTYNLLLEGLCKDGRMAEVMDLLGRLPE 407



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 19/213 (8%)

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR---ARGIAPTKISYTTLMK 365
           LR++ +     P+   YNILI  ++   DS  A    +EMR      + P  ++Y+TL+ 
Sbjct: 187 LRDLRNKYLPAPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLG 246

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
               + + K A ++F+ M+    +  D + +N++++G+CR+G VE+A+ I   M++N   
Sbjct: 247 GLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNECE 306

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485
           PN   Y +L NG         A L+++E+      +  GV          +PD     AL
Sbjct: 307 PNAFNYATLINGHCKKGDVENAKLVFEEM------RSAGV----------EPDAVSYTAL 350

Query: 486 ADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
                R     + +++V  M E G   +   Y 
Sbjct: 351 IGCLCRHGSVDEGIDLVMEMREKGCKADVVTYN 383



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 71/317 (22%)

Query: 31  SVKLFDVVVKRVRKFSDPDIVSD-------------SKPDTAAYNAVLNACANLGKPKKF 77
           S K   V + R+     PD+++D               P+T  YN ++      G  +  
Sbjct: 160 SHKALAVCLDRLVSSRCPDVLADLIADLRDLRNKYLPAPNTCVYNILIKHYVKNGDSETA 219

Query: 78  LQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEM-GITLCMTTFQS 133
            ++ D+M E+     +P+++TY+ ++    RA +      + E ++E   I     T+  
Sbjct: 220 FRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNV 279

Query: 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLP 193
           ++  +   G +E A TI   MR+                    NE +            P
Sbjct: 280 IIDGFCRLGQVEKARTIFGFMRK--------------------NECE------------P 307

Query: 194 NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
           N+ N                  Y TL+ G+  +G V +   +   MR        PD V+
Sbjct: 308 NAFN------------------YATLINGHCKKGDVENAKLVFEEMRSA---GVEPDAVS 346

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           YT ++  L + GS+D    ++ EM   G  A+ +TYN+LL+G C+  ++ +  +LL  + 
Sbjct: 347 YTALIGCLCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLP 406

Query: 314 DDAKIEPDVVSYNILID 330
           ++  ++ +V SY I+++
Sbjct: 407 EEG-VQLNVASYRIVMN 422



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 25/247 (10%)

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----ENEGDDDD 183
             +  L+  YV  GD E A  ++  MRE     C  +R  +L  YS+        G   +
Sbjct: 201 CVYNILIKHYVKNGDSETAFRVLDEMREY---TCGDVRP-NLVTYSTLLGGLCRAGKMKE 256

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             E+FE ++                  P+   Y  ++ G+   G+V     + G MR+ E
Sbjct: 257 AFELFEGMIEKD------------HIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNE 304

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P+   Y T+++   K G ++ A+ V  EM   GV  + ++Y  L+   C+   +D
Sbjct: 305 ---CEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVD 361

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +  +L+ EM +    + DVV+YN+L++G       A  +     +   G+     SY  +
Sbjct: 362 EGIDLVMEMREKG-CKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIV 420

Query: 364 MKAFALS 370
           M     S
Sbjct: 421 MNTLCSS 427



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 13/140 (9%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+   ++T+++     GD   VE+ KL   V + +R        +  +PD  +Y A++  
Sbjct: 307 PNAFNYATLINGHCKKGD---VENAKL---VFEEMRS-------AGVEPDAVSYTALIGC 353

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
               G   + + L  +M E G K DV+TYN++++   +  R   ++ +L R+ E G+ L 
Sbjct: 354 LCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLN 413

Query: 128 MTTFQSLVAAYVGFGDLEIA 147
           + +++ ++      GD+E A
Sbjct: 414 VASYRIVMNTLCSSGDMEKA 433


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 181/421 (42%), Gaps = 44/421 (10%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           D +     +   +N +L+     GK  +   L+D++   G  P+V++YN +I    R   
Sbjct: 358 DALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDN 417

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR---------- 158
            +    V + +L+ G T    TF  L+  Y   GD+E A +I   M++            
Sbjct: 418 INAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGI 477

Query: 159 --RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
             + +CK  R           EG D     +F K +     P+  P             Y
Sbjct: 478 IIKGLCKAGRSF---------EGRD-----LFNKFVSQGFVPTCMP-------------Y 510

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            T++ G++ EG ++    +    R   +    P  VTYT+++    K  ++D A ++L +
Sbjct: 511 NTIIDGFIKEGNINLASNV---YREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLND 567

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R G+  +   Y  L+ G+C++  +  A ELL E+   A + P+   YN +I GF  ++
Sbjct: 568 MKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRG-AGLSPNRFIYNSMITGFKNMN 626

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   A+  + +M   GI     +YT+L+     S +   A+ +  EML    +  D  A 
Sbjct: 627 NVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEML-SKGILPDDRAH 685

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            +L+ G C  G  E A++I+E M      P+V  Y +L  G        EA  L  E+ +
Sbjct: 686 TVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLD 745

Query: 457 R 457
           R
Sbjct: 746 R 746



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/516 (21%), Positives = 218/516 (42%), Gaps = 56/516 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP-DTA 59
           M  +G++P    +++V++     G+    E+++L D            D+V+  K  + A
Sbjct: 219 MRAAGWIPPEGTFTSVITACVKEGN--VAEALRLKD------------DMVNCGKSMNLA 264

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
              +++      G  +  L L +++ E G  P+ +TY+V+I  C +             +
Sbjct: 265 VATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEM 324

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ-AMREGRRDVCKIIRELD-LEDYSSEN 177
              GI   + +  S++  Y+     + A T+   A+  G  +V      L  L      N
Sbjct: 325 KTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMN 384

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           E  +  D+                  ++ K  +PN   Y  ++ G+  +  ++   ++  
Sbjct: 385 EACNLWDE------------------VIAKGISPNVVSYNNIILGHCRKDNINAACKVYK 426

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M    DN   P+ VT+T ++    K G ++ A  +   M    +     T  I++KG C
Sbjct: 427 EML---DNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLC 483

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  +  + ++L  +      + P  + YN +IDGFI   +   A   + EM   GI P+ 
Sbjct: 484 KAGRSFEGRDLFNKFVSQGFV-PTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPST 542

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++YT+L+  F   +   LA K+ ++M R   +K+DI A+  L++G+C+   ++ A  ++ 
Sbjct: 543 VTYTSLIDGFCKGNNIDLALKLLNDMKRKG-LKMDIKAYGTLIDGFCKRRDMKSAHELLN 601

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
            ++  G  PN   Y S+  G        EA+ L+K++             +  +P  LK 
Sbjct: 602 ELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKM------------VNEGIPCDLKT 649

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
              L+D L    +++     A +I   M   GI P+
Sbjct: 650 YTSLIDGL----LKSGRLLYASDIHTEMLSKGILPD 681



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 34/367 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G+ P+   ++ ++      GD     S+           +  D +I+    P    
Sbjct: 428 MLDNGFTPNAVTFTILMDGYFKKGDIENAFSI---------FHRMKDANIL----PTDTT 474

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              ++      G+  +   LF++    G  P  + YN +I    +    +L   V   + 
Sbjct: 475 LGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMC 534

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E+GIT    T+ SL+  +    ++++A  ++  M+  R+ +     ++D++ Y +  +G 
Sbjct: 535 EVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMK--RKGL-----KMDIKAYGTLIDGF 587

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               D      L N +  +          +PN  IY +++ G+ N   V + + +   M 
Sbjct: 588 CKRRDMKSAHELLNELRGAG--------LSPNRFIYNSMITGFKNMNNVEEAIDLYKKMV 639

Query: 241 RQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
               N   P D  TYT+++  L+K+G +  A  +  EM   G+  +   + +L+ G C +
Sbjct: 640 ----NEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNK 695

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q + A+++L +M     I P V+ YN LI G     +   A    +EM  RG+ P  I+
Sbjct: 696 GQFENARKILEDMNGKNMI-PSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNIT 754

Query: 360 YTTLMKA 366
           Y  L+  
Sbjct: 755 YDILVNG 761



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           +E D  +Y+I +    L  +S  AL+   EMRA G  P + ++T+++ A         A 
Sbjct: 189 VELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEAL 248

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           ++ D+M+   +  +++     L++GYC  G +  A  ++  + E+G  PN  TY  L +G
Sbjct: 249 RLKDDMVNCGK-SMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDG 307

Query: 438 ISLARKPGEALLLWKEIKER 457
                   +A   + E+K +
Sbjct: 308 CCKNGNIEKAFEFYSEMKTK 327



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 36/227 (15%)

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM--------- 312
           ++ G++  A Q   +    GV  ++  Y+I +   C +     A  LLREM         
Sbjct: 169 IQEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPE 228

Query: 313 ----------------ADDAKIEPDVV----SYNI-----LIDGFILIDDSAGALTFFNE 347
                           A+  +++ D+V    S N+     L+ G+ +  +   AL   NE
Sbjct: 229 GTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNE 288

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           +   G+ P K++Y+ L+     +   + A + + EM +   ++  + + N ++EGY +  
Sbjct: 289 ISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEM-KTKGIRSSVYSLNSILEGYLKCQ 347

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
             + A  +     E+G   NV T+ +L + +    K  EA  LW E+
Sbjct: 348 SWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEV 393


>gi|326497659|dbj|BAK05919.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 523

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 3/231 (1%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           APN+ +Y  L+K Y+  G      R+L  MR        P+ VTY+T++  L +AG M  
Sbjct: 206 APNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKE 265

Query: 270 ARQVLAEMT-RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           A ++   M  +  +  +++TYN+++ G+C+  Q++KA+ +   M  + + EP+  +Y  L
Sbjct: 266 AFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKN-ECEPNAFNYATL 324

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+G     D   A   F EMR+ G+ P  +SYT L+              +  EM R+  
Sbjct: 325 INGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEM-REKG 383

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
            K D+V +N+L+EG C+ G + E   ++ R+ E G   NVA+Y  + N + 
Sbjct: 384 CKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLC 434



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 4/211 (1%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEM---TRIGVPANRITYNILLKGYCQQLQIDKA 305
           P+   Y  ++   VK G  + A +VL EM   T   V  N +TY+ LL G C+  ++ +A
Sbjct: 207 PNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEA 266

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            EL   M +   I PD ++YN++IDGF  +     A T F  MR     P   +Y TL+ 
Sbjct: 267 FELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNECEPNAFNYATLIN 326

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                   + A  VF+EM R   V+ D V++  L+   CR G V+E   ++  M+E G  
Sbjct: 327 GHCKKGDVENAKLVFEEM-RSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCK 385

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKE 456
            +V TY  L  G+    +  E + L   + E
Sbjct: 386 ADVVTYNLLLEGLCKDGRMAEVMDLLGRLPE 416



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 132/320 (41%), Gaps = 26/320 (8%)

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----ENEGDDDD 183
             +  L+  YV  GD E A  ++  MRE     C  +R  +L  YS+        G   +
Sbjct: 210 CVYNILIKHYVKNGDSETAFRVLDEMRE---YTCGDVRP-NLVTYSTLLGGLCRAGKMKE 265

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             E+FE ++                  P+   Y  ++ G+   G+V     + G MR+ E
Sbjct: 266 AFELFEGMIEKD------------HIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNE 313

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P+   Y T+++   K G ++ A+ V  EM   GV  + ++Y  L+   C+   +D
Sbjct: 314 ---CEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVD 370

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +  +L+ EM +    + DVV+YN+L++G       A  +     +   G+     SY  +
Sbjct: 371 EGIDLVMEMREKG-CKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIV 429

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           M     S   + A  +   ML    +     A N L+ G C +G V +A   +  + + G
Sbjct: 430 MNTLCSSGDMEKAVGLLGLMLGRGFLP-HYAASNKLLIGLCDVGRVADATAALYGLAKFG 488

Query: 424 FYPNVATYGSLANGISLARK 443
           F P  + +  L   +   RK
Sbjct: 489 FMPEASCWAKLIEAVCRDRK 508



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 150/376 (39%), Gaps = 46/376 (12%)

Query: 31  SVKLFDVVVKRVRKFSDPDIVSD-------------SKPDTAAYNAVLNACANLGKPKKF 77
           S K   V + R+     PD+++D               P+T  YN ++      G  +  
Sbjct: 169 SHKALAVCLDRLVSSRCPDVLADLIADLRDLRNKYLPAPNTCVYNILIKHYVKNGDSETA 228

Query: 78  LQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEM-GITLCMTTFQS 133
            ++ D+M E+     +P+++TY+ ++    RA +      + E ++E   I     T+  
Sbjct: 229 FRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNV 288

Query: 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----ENEGDDDDDDEVF 188
           ++  +   G +E A TI   MR   ++ C    E +  +Y++       +GD ++   VF
Sbjct: 289 IIDGFCRLGQVEKARTIFGFMR---KNEC----EPNAFNYATLINGHCKKGDVENAKLVF 341

Query: 189 EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248
           E++    + P +               YT L+      G V + + ++  MR +   A  
Sbjct: 342 EEMRSAGVEPDAVS-------------YTALIGCLCRHGSVDEGIDLVMEMREKGCKA-- 386

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
            D VTY  ++  L K G M     +L  +   GV  N  +Y I++   C    ++KA  L
Sbjct: 387 -DVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSSGDMEKAVGL 445

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L  M       P   + N L+ G   +   A A      +   G  P    +  L++A  
Sbjct: 446 LGLML-GRGFLPHYAASNKLLIGLCDVGRVADATAALYGLAKFGFMPEASCWAKLIEAVC 504

Query: 369 LSSQPKLANKVFDEML 384
              + + + ++ D ++
Sbjct: 505 RDRKLRRSVELLDILI 520



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 13/140 (9%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+   ++T+++     GD   VE+ KL   V + +R        +  +PD  +Y A++  
Sbjct: 316 PNAFNYATLINGHCKKGD---VENAKL---VFEEMRS-------AGVEPDAVSYTALIGC 362

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
               G   + + L  +M E G K DV+TYN++++   +  R   ++ +L R+ E G+ L 
Sbjct: 363 LCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLN 422

Query: 128 MTTFQSLVAAYVGFGDLEIA 147
           + +++ ++      GD+E A
Sbjct: 423 VASYRIVMNTLCSSGDMEKA 442



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 24/153 (15%)

Query: 375 LANKVFDEMLRDPRVKV----DIVAWNMLVEGYCRMGLVEEAKRIIERMKE---NGFYPN 427
           LA+ + D  LRD R K     +   +N+L++ Y + G  E A R+++ M+E       PN
Sbjct: 189 LADLIAD--LRDLRNKYLPAPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPN 246

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           + TY +L  G+  A K  EA  L++ + E+                 + PD+   + + D
Sbjct: 247 LVTYSTLLGGLCRAGKMKEAFELFEGMIEK---------------DHIVPDQLTYNVIID 291

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R     KA  I   M ++   PN   Y  +
Sbjct: 292 GFCRLGQVEKARTIFGFMRKNECEPNAFNYATL 324


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 210/482 (43%), Gaps = 53/482 (10%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF-- 114
           DT+    V++   +LG      Q+F++M     +P++LT N ++    R++  H LVF  
Sbjct: 142 DTSLAAYVISKQPHLGH-----QIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSR 196

Query: 115 -VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE----------------- 156
            V +  +++G+   + TF  L+  Y    + E A  ++  M E                 
Sbjct: 197 EVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTAL 256

Query: 157 GRRDVCKIIRELDLEDYSS---ENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAP 211
            +R     +R+L L+  +S    N    +     + KL    +  ++E    +  K   P
Sbjct: 257 CKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKL--KWLKEAAEVIELMTGKGMLP 314

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +   Y T+++G  +EG++ + VR+   M   E     PD VTY T++    +    D A 
Sbjct: 315 DVWTYNTMVRGLCDEGKIDEAVRLRDKM---ESFKLVPDVVTYNTLIDGCFEHRGSDAAF 371

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           +++ EM   GV  N +T+NI++K +C + +ID+A  ++ +M +     PD  +YN +I+G
Sbjct: 372 KLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESG-FSPDCFTYNTMING 430

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           +      A A    +EM  +G+     +  TL+    L  Q   A  +  +  +   + +
Sbjct: 431 YCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYI-L 489

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D V +  L+ GY +    + A ++ E MKE G    + TY ++  G+ L+ K  +A+   
Sbjct: 490 DEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKL 549

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
            E+ E+                 L PDE   + +           KA +    M EH + 
Sbjct: 550 NELLEK----------------GLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLK 593

Query: 512 PN 513
           P+
Sbjct: 594 PD 595



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 187/415 (45%), Gaps = 47/415 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLV 113
           +P+   +N +++   +    ++ L+L +QM E+G  PD +TYN V+  LC R+     L 
Sbjct: 208 QPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQ----LT 263

Query: 114 FVLERILEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
            V + +L+M   G+     T+  LV  Y     L+ A  +++ M  G+  +       D+
Sbjct: 264 QVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELM-TGKGML------PDV 316

Query: 171 EDYSSENEG--DDDDDDEVFE--------KLLPNSINPSS-----------------EPP 203
             Y++   G  D+   DE           KL+P+ +  ++                    
Sbjct: 317 WTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEE 376

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +  +    N   +  ++K +  EG++ +   +   M +  ++   PD  TY T+++   K
Sbjct: 377 MKARGVKENGVTHNIMIKWFCTEGKIDEASNV---MVKMVESGFSPDCFTYNTMINGYCK 433

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG M  A +++ EM R G+  +  T N LL   C + Q+D A  L  +      I  D V
Sbjct: 434 AGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYI-LDEV 492

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y  LI G+   + +  AL  + EM+  GI  T I+Y T+++   LS +   A    +E+
Sbjct: 493 TYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNEL 552

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           L    V  D    N+++ GYC  G VE+A +   +M E+   P++ T   L  G+
Sbjct: 553 LEKGLVP-DESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGL 606



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 103/498 (20%), Positives = 197/498 (39%), Gaps = 91/498 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN ++    + GK  + ++L D+M  F   PDV+TYN +I  C           +
Sbjct: 314 PDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKL 373

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +E +   G+     T   ++  +                                     
Sbjct: 374 VEEMKARGVKENGVTHNIMIKWFC------------------------------------ 397

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG  D+   V  K++ +              F+P+   Y T++ GY   G++++  +M
Sbjct: 398 -TEGKIDEASNVMVKMVESG-------------FSPDCFTYNTMINGYCKAGKMAEAYKM 443

Query: 236 LGAMRR---------------------QEDNASHP-----------DHVTYTTVVSALVK 263
           +  M R                     Q D+A              D VTY T++    K
Sbjct: 444 MDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFK 503

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
               DRA ++  EM   G+ A  ITYN +++G C   + D+A + L E+ +   + PD  
Sbjct: 504 DEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLV-PDES 562

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           + NI+I G+        A  F N+M    + P   +   L++        +    +F+  
Sbjct: 563 TSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTW 622

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +   +  +D V +N+++  +C+   +E+A  ++  M+     P+  TY ++  G++ A +
Sbjct: 623 ISKGK-PMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGR 681

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL-DALADICVRAAFFRKALEIV 502
             EA  L  +  E+ +  K       D  P L   + +  + ++ +C +   ++ A+++ 
Sbjct: 682 TEEAEKLALKFAEKGQQVK-----TQDTSPELGTSDMMYSEQISSLCTQGK-YKDAMKLF 735

Query: 503 ACMEEHGIPPNKTKYKKI 520
              E+ G+  NK  Y K+
Sbjct: 736 QQAEQKGVSLNKYTYIKL 753



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 156/410 (38%), Gaps = 80/410 (19%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   PD   YN ++N     GK  +  ++ D+M   G K D  T N ++           
Sbjct: 415 SGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLH---------- 464

Query: 112 LVFVLERILEMGITLCM-----------TTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160
               LE+ L+   TL M            T+ +L+  Y      + A  + + M+E    
Sbjct: 465 -TMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIV 523

Query: 161 VC-----KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215
                   IIR L L   +          D+  +KL            LL K   P+   
Sbjct: 524 ATIITYNTIIRGLCLSGKT----------DQAVDKL----------NELLEKGLVPDEST 563

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
              ++ GY  EG V    +    M    +++  PD  T   ++  L + G +++   +  
Sbjct: 564 SNIIIHGYCWEGAVEKAFQFHNKMV---EHSLKPDIFTCNILLRGLCREGMLEKGLTLFN 620

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
                G P + +TYNI++  +C++ +++ A +L+ EM +   +EPD  +YN ++ G    
Sbjct: 621 TWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEM-EGKNLEPDRYTYNAIVTGL--- 676

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD--PRVKVDI 393
                               TK   T   +  AL    K A K      +D  P +    
Sbjct: 677 --------------------TKAGRTEEAEKLAL----KFAEKGQQVKTQDTSPELGTSD 712

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + ++  +   C  G  ++A ++ ++ ++ G   N  TY  L +G+   RK
Sbjct: 713 MMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRK 762


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 202/481 (41%), Gaps = 39/481 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN+V+  C   G+ K+ L +  +M   G  P+ ++YN+ I+ C R+ R    V V
Sbjct: 248 PDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEV 307

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L ++   G+T  + ++ + + A  G G  E +  ++  M    R V       +    + 
Sbjct: 308 LRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEM--AGRGVAPNTIHFNSAIVAC 365

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  +   E+  ++    +              P++  + + +      GR  + + +
Sbjct: 366 GKGGQWEKAVELLREVTALGLT-------------PDATSFNSAIAACTKSGRWKEALEL 412

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M  +      PD ++Y + + A  K G  + A ++  +M   G+  N I+ NI ++ 
Sbjct: 413 LKEMPAKR---LKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRA 469

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             ++ +  +  ELLR+M     + P+V++YN  I           AL    +M+   + P
Sbjct: 470 CGERGRWQEGLELLRQMPAQG-LTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTP 528

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y + + A +   + K A  +  EM     +  D++++   ++ Y + G  E A  +
Sbjct: 529 DSITYNSAIAACSKRGRWKEAVALLREM-PGQGLTPDVISYTAAIDAYGKNGQWERAVEL 587

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER---------------CEV 460
           + +M   G  PNV TY S+        +  +AL L KE+KE                C  
Sbjct: 588 LRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGK 647

Query: 461 K---KEGVNADSDLPP-PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
           +   +E ++   ++P   L PD     +    C     + KAL ++  M  HG+ P  T 
Sbjct: 648 RGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATS 707

Query: 517 Y 517
           Y
Sbjct: 708 Y 708



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 109/506 (21%), Positives = 200/506 (39%), Gaps = 79/506 (15%)

Query: 35  FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
           ++  ++ +R+  + + VS   P+   YN+ + AC +  + +  + L  +M +    PD +
Sbjct: 160 WEKALELLREIPEQEGVS---PNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEI 216

Query: 95  TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           +YN  IK C R  +   ++ +L  +  +G+T    T+ S++    G G            
Sbjct: 217 SYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVI---TGCG------------ 261

Query: 155 REGR-RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
           +EG+ ++   ++ E+                                      K   P +
Sbjct: 262 KEGQWKEALSVLTEMS------------------------------------AKGLTPET 285

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y   ++     GR  + V +L   R+ E     PD ++Y   + A    G  + +  +
Sbjct: 286 ISYNMAIRACGRSGRWKEAVEVL---RQMESQGVTPDVISYDAAIKACGGGGQWETSVDL 342

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM   GV  N I +N  +    +  Q +KA ELLRE+     + PD  S+N  I    
Sbjct: 343 LDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREV-TALGLTPDATSFNSAIAACT 401

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  AL    EM A+ + P  ISY + ++A     Q ++A ++  +M     +  ++
Sbjct: 402 KSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKG-LTPNV 460

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           ++ N+ +      G  +E   ++ +M   G  PNV TY S         +  +AL L  +
Sbjct: 461 ISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAK 520

Query: 454 IKE---------------RCEVK---KEGVNADSDLPPP-LKPDEELLDALADICVRAAF 494
           +KE                C  +   KE V    ++P   L PD     A  D   +   
Sbjct: 521 MKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQ 580

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
           + +A+E++  M   G+ PN   Y  +
Sbjct: 581 WERAVELLRQMPTKGLTPNVITYNSV 606



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 146/333 (43%), Gaps = 27/333 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD  +YN+ + AC   G+ +  L+L  QM   G  P+V++ N+ I+ C    R    + 
Sbjct: 422 KPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLE 481

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L ++   G+T  + T+ S +      G  E A  ++  M+E       +    D   Y+
Sbjct: 482 LLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKE-------LAMTPDSITYN 534

Query: 175 SE----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           S     ++     +     + +P             +   P+   YT  +  Y   G+  
Sbjct: 535 SAIAACSKRGRWKEAVALLREMPG------------QGLTPDVISYTAAIDAYGKNGQWE 582

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             V +L   R+       P+ +TY +V+ A  + G  ++A  +L E+    V  + ++YN
Sbjct: 583 RAVELL---RQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYN 639

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           + +    ++ + ++A +LLREM  +  + PDV+SY   I       +   AL   N M A
Sbjct: 640 LAISACGKRGRWEEALDLLREMPAEG-LTPDVISYTSAIRACNAEGEWEKALGLLNLMGA 698

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            G++PT  SY+  ++A     + + A  +  EM
Sbjct: 699 HGVSPTATSYSLAIEACGKGGRREEAVCLVREM 731



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 27/270 (10%)

Query: 259 SALVKAGSMDRARQVLA---EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           +AL +A +  + R+ L    EM   GV     +Y   +    +Q Q +KA ELLRE+ + 
Sbjct: 115 AALREAATTGKWREALGILDEMKEGGVVCAH-SYTTAITTCGRQGQWEKALELLREIPEQ 173

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             + P+V  YN  I+     D    A++   EM  R + P +ISY + +KA     Q + 
Sbjct: 174 EGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWER 233

Query: 376 ANKVFDEMLRDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
              +  EM   P V +  D + +N ++ G  + G  +EA  ++  M   G  P   +Y +
Sbjct: 234 VIGLLREM---PSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISY-N 289

Query: 434 LANGISLARKPGEALLLWKEIKERC-EVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           +A  I    + G     WKE  E   +++ +GV           PD    DA    C   
Sbjct: 290 MA--IRACGRSGR----WKEAVEVLRQMESQGVT----------PDVISYDAAIKACGGG 333

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKIYV 522
             +  +++++  M   G+ PN   +    V
Sbjct: 334 GQWETSVDLLDEMAGRGVAPNTIHFNSAIV 363



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 13/156 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+V  +++V+    A G  G  E  K  D++ +       PD++S        
Sbjct: 591 MPTKGLTPNVITYNSVIK---ACGRGGEWE--KALDLLKELKETAVAPDLMS-------- 637

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN  ++AC   G+ ++ L L  +M   G  PDV++Y   I+ C         + +L  + 
Sbjct: 638 YNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMG 697

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
             G++   T++   + A    G  E A  +V+ M +
Sbjct: 698 AHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQ 733



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 36/70 (51%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y + + AC   G+ +K L L + M   G  P   +Y++ I+ C +  R+   V +
Sbjct: 668 PDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCL 727

Query: 116 LERILEMGIT 125
           +  + + G++
Sbjct: 728 VREMAQRGLS 737


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 153/302 (50%), Gaps = 30/302 (9%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y+T++ G+  EG   D  +ML       D    P+ VTY ++++AL KA ++D+A
Sbjct: 86  PDVVSYSTVINGFFKEG---DLDKML-------DQRISPNVVTYNSIIAALCKAQTVDKA 135

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL  M + GV  + +TYN ++ G+C   Q  +A   L++M  D  +EPDVV+YN L+D
Sbjct: 136 MEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG-VEPDVVTYNSLMD 194

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A   F+ M  RG+ P   +Y TL++ +A        + + D M+R+  + 
Sbjct: 195 YLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG-IH 253

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +   +++LV  Y +   VEEA  +  +M++ G  PN  TYG++ + +  + +  +A+L 
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 451 WKEIKERCEVKKEGVNADSDLPPPL----------KPDEELLDALAD--ICVRAAFFRKA 498
           ++++ +      EG+  DS +   L          +  EEL   + D  IC+   FF   
Sbjct: 314 FEQMID------EGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 367

Query: 499 LE 500
           ++
Sbjct: 368 ID 369



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 174/383 (45%), Gaps = 37/383 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK--PDVLTYNVMIKLCARASRKHLLV 113
           PD  +YN +LN   +  + ++ L+L   M + G    PDV++Y+ +I    +        
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGD----- 103

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
             L+++L+  I+  + T+ S++AA      L  A+T+ +AM E    + K     D   Y
Sbjct: 104 --LDKMLDQRISPNVVTYNSIIAA------LCKAQTVDKAM-EVLTTMVKSGVMPDCMTY 154

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT----FAPNSRIYTTLMKGYMNEGRV 229
           +S   G              +S  P      L K       P+   Y +LM      GR 
Sbjct: 155 NSIVHG------------FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 202

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           ++  ++  +M ++      PD  TY T++      G++     +L  M R G+  N   +
Sbjct: 203 TEARKIFDSMTKR---GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           +IL+  Y +Q ++++A  +  +M     + P+ V+Y  +ID          A+ +F +M 
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQG-LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
             G+ P  I Y +L+ +  +  + + A ++F EML D  + +  + +N +++ +C+ G V
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEML-DRGICLSTIFFNSIIDSHCKEGRV 377

Query: 410 EEAKRIIERMKENGFYPNVATYG 432
            E+ ++ + M   G  P++ T G
Sbjct: 378 IESGKLFDLMVRIGVKPDIITLG 400



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 125/280 (44%), Gaps = 47/280 (16%)

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD-AKIEPDVVSYNIL 328
           AR V  E+ R G+P +  +YNILL G C + +  +A ELL  MADD     PDVVSY+ +
Sbjct: 36  ARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTV 94

Query: 329 IDGFI-------LIDDSAG---------------------ALTFFNEMRARGIAPTKISY 360
           I+GF        ++D                         A+     M   G+ P  ++Y
Sbjct: 95  INGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTY 154

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +++  F  S QPK A  VF + +R   V+ D+V +N L++  C+ G   EA++I + M 
Sbjct: 155 NSIVHGFCSSGQPKEA-IVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMT 213

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  P++ TYG+L  G +                +   V+  G+  D  +   + P+  
Sbjct: 214 KRGLKPDITTYGTLLQGYA---------------TKGALVEMHGL-LDLMVRNGIHPNHY 257

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +   L     +     +A+ + + M + G+ PN   Y  +
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTV 297



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/475 (19%), Positives = 195/475 (41%), Gaps = 72/475 (15%)

Query: 8   PHVKAWSTVVSRLAASGD-----DGPVE-SVKLFDVVVKRVRKFSDPD---------IVS 52
           P V ++STV++     GD     D  +  +V  ++ ++  + K    D         + S
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
              PD   YN++++   + G+PK+ +    +M   G +PDV+TYN ++    +  R    
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 205

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRD--------VCK 163
             + + + + G+   +TT+ +L+  Y   G L     ++  M R G           VC 
Sbjct: 206 RKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 265

Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
             ++  +E+              VF K+    +N             PN+  Y T++   
Sbjct: 266 YAKQEKVEEAML-----------VFSKMRQQGLN-------------PNAVTYGTVIDVL 301

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
              GRV D +     M    D    PD + Y +++ +L      ++A ++  EM   G+ 
Sbjct: 302 CKSGRVEDAMLYFEQMI---DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGIC 358

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS-----------YNILIDGF 332
            + I +N ++  +C++ ++ ++ +L   M     ++PD+++           Y++ ++ +
Sbjct: 359 LSTIFFNSIIDSHCKEGRVIESGKLFDLMV-RIGVKPDIITLGRFLGSARRDYSLFVNIY 417

Query: 333 ILIDDSAGALTFFNEMRAR---GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR- 388
            +  + +       E       G   +  S    +  + +       NK+ D+ LR  + 
Sbjct: 418 FIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQN 477

Query: 389 -----VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
                +K++   +N++++   ++G  +EAK +      NG  PN  TY  +A  I
Sbjct: 478 LCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 532



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 35/220 (15%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAPTKISYTTLMKAFALSSQPKLAN 377
           PDV SYNIL++G    + S  AL   + M   G    P  +SY+T++  F          
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGF-------FKE 101

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
              D+ML D R+  ++V +N ++   C+   V++A  ++  M ++G  P+  TY S+ +G
Sbjct: 102 GDLDKML-DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
              + +P EA++  K+++       +GV          +PD    ++L D   +     +
Sbjct: 161 FCSSGQPKEAIVFLKKMR------SDGV----------EPDVVTYNSLMDYLCKNGRCTE 204

Query: 498 ALEIVACMEEHGIPPNKTKY---------KKIYVEMHSRM 528
           A +I   M + G+ P+ T Y         K   VEMH  +
Sbjct: 205 ARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL 244



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 133/332 (40%), Gaps = 42/332 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R+G  P+   +S +V   A        E V+   +V  ++R+           P+   
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQ------EKVEEAMLVFSKMRQ-------QGLNPNAVT 293

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y  V++     G+ +  +  F+QM + G +PD + YN +I  LC     +      LE +
Sbjct: 294 YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLE-M 352

Query: 120 LEMGITLCMTTFQSLVAAYVGFGD-LEIAETIVQAMREGRR-DVCKIIRELDL--EDYS- 174
           L+ GI L    F S++ ++   G  +E  +     +R G + D+  + R L     DYS 
Sbjct: 353 LDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSL 412

Query: 175 ----------SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
                       N GD + +  V      N+ + SS  P L          Y  ++ G  
Sbjct: 413 FVNIYFIFTNMSNTGDKEKETPVNTNG-GNTASNSSGGPFLGT--------YNIILHGLC 463

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
                 D +RM   +   +      +  T+  ++ AL+K G  D A+ +    +  G+  
Sbjct: 464 KNKLTDDALRMFQNLCLMD---LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVP 520

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           N  TY ++ +    Q  +++  +L   M D+ 
Sbjct: 521 NYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 552


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 178/417 (42%), Gaps = 67/417 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  A N  ++      +    LQ+ ++M   G  PDV+TY  ++       R    V +
Sbjct: 258 PDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGL 317

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +++MG+   +    +L+     FG                  +CK            
Sbjct: 318 WEEMVKMGLKPDVVACGALI-----FG------------------LCK------------ 342

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                +   +E FE              +L      +  IY  L+ G+   G +     +
Sbjct: 343 -----NSKVEEAFEL----------ASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTI 387

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  MR    N   P  VTY  +++     G M++A  ++ +M   GV  +R +YN LLKG
Sbjct: 388 ISFMR---TNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKG 444

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  Q+DKA   + +  +      D+VS NILID F  +     AL  F EM  +G+  
Sbjct: 445 LCKTHQLDKAFAFVSDHMEVGGF-CDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQA 503

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             ++Y TL+          LA ++F++ML+   DP V +    +N+++   C++G ++ A
Sbjct: 504 DAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNL----YNIMLHHLCKVGDLKRA 559

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           ++I   M +    P++ TY +L   +    +  EAL L+K+++ +      GV  DS
Sbjct: 560 QKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTK------GVEPDS 610



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 161/401 (40%), Gaps = 55/401 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  V+    N  +  + + L+++M + G KPDV+    +I    + S+      +
Sbjct: 293 PDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFEL 352

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             R+L + I L ++ + +L++ +   G ++ A TI+  MR                    
Sbjct: 353 ASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMR-------------------- 392

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                    EP ++          Y  L+  Y   G +     +
Sbjct: 393 ---------------------TNGCEPGVVT---------YNILLNHYCTIGMMEKAENL 422

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M   E +  +PD  +Y  ++  L K   +D+A   +++   +G   + ++ NIL+  
Sbjct: 423 ITKM---ETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDA 479

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+  ++  A EL +EM D   ++ D V+Y  LI+G   +     A   F +M    I P
Sbjct: 480 FCKVKKVKSALELFKEM-DYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDP 538

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
               Y  ++         K A K+F  M++   +  DIV +N L+    +     EA  +
Sbjct: 539 NVNLYNIMLHHLCKVGDLKRAQKIFLHMIQ-KEILPDIVTYNTLIYWLGKNSRAMEALDL 597

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            + M+  G  P+  T+  L NG+    +   A  +W+ + E
Sbjct: 598 FKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMME 638



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 128/312 (41%), Gaps = 23/312 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           A +  +Y  L+ GY+  G+    +   G       +      + Y   +  L+K    D 
Sbjct: 152 ALHRSLYRILLSGYVRAGKFDSVI---GTFDEMVMSGCREFGIDYNRYIGVLIKNCCFDL 208

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             +        G+     TY+  +   CQ  +I+  +ELL +M D     PD+ + NI I
Sbjct: 209 VEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADM-DRFGFSPDIWACNIYI 267

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           D     +    AL    +MR +G  P  ++YTT++     + +   A  +++EM++   +
Sbjct: 268 DCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVK-MGL 326

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           K D+VA   L+ G C+   VEEA  +  RM       +V+ Y +L +G   A    +A  
Sbjct: 327 KPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYT 386

Query: 450 LWKEIKER-CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
           +   ++   CE             P +     LL+    I        KA  ++  ME  
Sbjct: 387 IISFMRTNGCE-------------PGVVTYNILLNHYCTI----GMMEKAENLITKMETS 429

Query: 509 GIPPNKTKYKKI 520
           G+ P++  Y ++
Sbjct: 430 GVNPDRYSYNQL 441



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 27/292 (9%)

Query: 250 DHVTYTT--VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           DH  +    +VS L   G+     + L  +   GV  +R  Y ILL GY +  + D    
Sbjct: 117 DHSQFAIAYIVSLLFVDGNFALLSEFLGTVRSQGVALHRSLYRILLSGYVRAGKFDSVIG 176

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT--FFNEMRARGIAPTKISYTTLMK 365
              EM      E  +  YN  I   +LI +    L   ++    ++G+  T  +Y+  + 
Sbjct: 177 TFDEMVMSGCREFGI-DYNRYIG--VLIKNCCFDLVEKYYGMALSKGLCLTPFTYSRWIS 233

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           A   S++ +L  ++  +M R      DI A N+ ++  C+   + +A +++E+M+  G  
Sbjct: 234 ALCQSNRIELVEELLADMDRFG-FSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTI 292

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER--------CEVKKEGVNADSDLPPPLKP 477
           P+V TY ++   +   ++  EA+ LW+E+ +         C     G+  +S +    + 
Sbjct: 293 PDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFEL 352

Query: 478 DEELL-----------DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
              +L           +AL     RA    KA  I++ M  +G  P    Y 
Sbjct: 353 ASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYN 404



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/293 (19%), Positives = 114/293 (38%), Gaps = 62/293 (21%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +P    YN +LN    +G  +K   L  +M   G  PD  +YN ++K LC          
Sbjct: 397 EPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFA 456

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELDLE 171
           FV +  +E+G                GF D+     ++ A  + +  +   ++ +E+D  
Sbjct: 457 FVSDH-MEVG----------------GFCDIVSCNILIDAFCKVKKVKSALELFKEMDY- 498

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                              K    ++  Y TL+ G  + G  + 
Sbjct: 499 -----------------------------------KGMQADAVTYGTLINGLFSVGYYNL 523

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +   M + + +   P+   Y  ++  L K G + RA+++   M +  +  + +TYN 
Sbjct: 524 AEELFEQMLKAQID---PNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNT 580

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           L+    +  +  +A +L ++M     +EPD +++  LI+G  L+D+    L +
Sbjct: 581 LIYWLGKNSRAMEALDLFKDMRTKG-VEPDSLTFKYLING--LLDEGRSTLAY 630



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML++   P+V  ++ ++  L   GD             +KR +K     I  +  PD   
Sbjct: 531 MLKAQIDPNVNLYNIMLHHLCKVGD-------------LKRAQKIFLHMIQKEILPDIVT 577

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++       +  + L LF  M   G +PD LT+  +I       R  L   V E ++
Sbjct: 578 YNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMM 637

Query: 121 EMGITL 126
           E GI L
Sbjct: 638 ENGIIL 643



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 20/236 (8%)

Query: 52  SDSKPDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           S   PD  +YN +L   C      K F  + D M E G   D+++ N++I    +  +  
Sbjct: 429 SGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHM-EVGGFCDIVSCNILIDAFCKVKKVK 487

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             + + + +   G+     T+ +L+      G   +AE + + M + + D    +  + L
Sbjct: 488 SALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIML 547

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   GD     ++F  ++   I        LP     N+ IY          G+ S
Sbjct: 548 HHLC--KVGDLKRAQKIFLHMIQKEI--------LPDIVTYNTLIYWL--------GKNS 589

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
             +  L   +        PD +T+  +++ L+  G    A +V   M   G+  +R
Sbjct: 590 RAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMMENGIILDR 645


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 175/386 (45%), Gaps = 23/386 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCAR--ASRKHLL 112
           PD   +N V++    +G+ +K   +   +  +G  P V TYN +I   C +  A   + +
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +L+ ++E GI+    TF  L+  Y    +   A  + + M++       +     +  
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
             SE  G  ++  ++ E++    +             +PN   +  ++KG+  +G ++D 
Sbjct: 309 LCSE--GKVEEGVKLMEEMEDLGL-------------SPNEITFGCVLKGFCKKGMMADA 353

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
              +  M   E N   PD V Y  ++    + G M+ A  V   M + G+  N  TYN L
Sbjct: 354 NDWIDGM--TERNV-EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCL 410

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+ +      A  LL EM +   IE DVV+YN+LI       +   A+   +EM   G
Sbjct: 411 ITGFSRSGDWRSASGLLDEMKEKG-IEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++Y T+++ F      K A ++   M    R + ++V +N+ ++ +C++G ++EA
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM-EKCRKRANVVTYNVFIKYFCQIGKMDEA 528

Query: 413 KRIIERMKENGFYPNVATYGSLANGI 438
             ++  M +    PN  TY ++  G+
Sbjct: 529 NDLLNEMLDKCLVPNGITYETIKEGM 554



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 60/376 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRML-GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           P++     L+ G +   RV    +    A+RR+      PD  T+ TV+S L + G + +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRR----VSPDIYTFNTVISGLCRIGQLRK 209

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQL---QIDKAKELLREMADDAKIEPDVVSYN 326
           A  V  ++   G+  +  TYN L+ GYC++     +     LL+EM + A I P  V++ 
Sbjct: 210 AGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVE-AGISPTAVTFG 268

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--- 383
           +LI+G+    ++A A+  F EM+ +GIA + ++Y +L+       + +   K+ +EM   
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL 328

Query: 384 -------------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
                                          + +  V+ D+V +N+L++ Y R+G +E+A
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDA 388

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             + E M + G  PNV TY  L  G S +     A  L  E+KE+      G+ AD    
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK------GIEAD---- 438

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             +     L+ AL   C +    RKA++++  M E G+ PN   Y  I ++        K
Sbjct: 439 --VVTYNVLIGAL---CCKGE-VRKAVKLLDEMSEVGLEPNHLTYNTI-IQGFCDKGNIK 491

Query: 533 HASQARQDRRRERKRA 548
            A + R    + RKRA
Sbjct: 492 SAYEIRTRMEKCRKRA 507



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 176/409 (43%), Gaps = 23/409 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P T++ NA+L       +     + F         PD+ T+N +I    R  +      
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 115 VLERILEMGITLCMTTFQSLVAAYV---GFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           V + I   G+   + T+ SL+  Y    G G++   + +++ M E       +   + + 
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y   +  +      VFE++    I             A +   Y +L+ G  +EG+V +
Sbjct: 273 GYCKNS--NTAAAVRVFEEMKQQGI-------------AASVVTYNSLISGLCSEGKVEE 317

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V++   M   ED    P+ +T+  V+    K G M  A   +  MT   V  + + YNI
Sbjct: 318 GVKL---MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNI 374

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+  Y +  +++ A  +   MA    I P+V +YN LI GF    D   A    +EM+ +
Sbjct: 375 LIDVYRRLGKMEDAMAVKEAMAKKG-ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           GI    ++Y  L+ A     + + A K+ DEM  +  ++ + + +N +++G+C  G ++ 
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           A  I  RM++     NV TY           K  EA  L  E+ ++C V
Sbjct: 493 AYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 160/390 (41%), Gaps = 50/390 (12%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK-----P 56
           LR    P +  ++TV+S L   G                ++RK  D  +  D K     P
Sbjct: 183 LRRRVSPDIYTFNTVISGLCRIG----------------QLRKAGD--VAKDIKAWGLAP 224

Query: 57  DTAAYNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
             A YN++++     G          L  +M E G  P  +T+ V+I    + S     V
Sbjct: 225 SVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V E + + GI   + T+ SL++     G +E    +++ M +      +I     L+ +
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGF 344

Query: 174 SSENEGDDDDD--------------------DEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
             +    D +D                     +V+ +L       + +  +  K  +PN 
Sbjct: 345 CKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNV 404

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  L+ G+   G       +L  M+ +   A   D VTY  ++ AL   G + +A ++
Sbjct: 405 TTYNCLITGFSRSGDWRSASGLLDEMKEKGIEA---DVVTYNVLIGALCCKGEVRKAVKL 461

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM+ +G+  N +TYN +++G+C +  I  A E +R   +  +   +VV+YN+ I  F 
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYE-IRTRMEKCRKRANVVTYNVFIKYFC 520

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            I     A    NEM  + + P  I+Y T+
Sbjct: 521 QIGKMDEANDLLNEMLDKCLVPNGITYETI 550



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 147/351 (41%), Gaps = 38/351 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  +++++      G  G +  V   D+++K +       + +   P    +  +
Sbjct: 221 GLAPSVATYNSLIDGYCKKGGAGNMYHV---DMLLKEM-------VEAGISPTAVTFGVL 270

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N           +++F++M + G    V+TYN +I       +    V ++E + ++G+
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
           +    TF  ++  +   G +  A   +  M E   +   +I  + ++ Y     G  +D 
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVY--RRLGKMEDA 388

Query: 185 DEVFEKLLPNSINPS------------------SEPPLL----PKTFAPNSRIYTTLMKG 222
             V E +    I+P+                  S   LL     K    +   Y  L+  
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              +G V   V++L  M    +    P+H+TY T++      G++  A ++   M +   
Sbjct: 449 LCCKGEVRKAVKLLDEM---SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRK 505

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            AN +TYN+ +K +CQ  ++D+A +LL EM D   + P+ ++Y  + +G +
Sbjct: 506 RANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV-PNGITYETIKEGMM 555



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 31/299 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G    V  +++++S L + G     E VKL +       +  D  +     P+   
Sbjct: 290 MKQQGIAASVVTYNSLISGLCSEGK--VEEGVKLME-------EMEDLGL----SPNEIT 336

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  VL      G         D M E   +PDV+ YN++I +  R  +    + V E + 
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA 396

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI+  +TT+  L+  +   GD   A  ++  M+E      K I E D+  Y+    G 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE------KGI-EADVVTYNVL-IGA 448

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                EV + +    ++  SE  L      PN   Y T+++G+ ++G +     +     
Sbjct: 449 LCCKGEVRKAV--KLLDEMSEVGL-----EPNHLTYNTIIQGFCDKGNIKSAYEI---RT 498

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R E      + VTY   +    + G MD A  +L EM    +  N ITY  + +G  ++
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEK 557



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 24/217 (11%)

Query: 38  VVKRVRKFSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91
           V +R+ K  D   V ++       P+   YN ++   +  G  +    L D+M E G + 
Sbjct: 378 VYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEA 437

Query: 92  DVLTYNVMI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           DV+TYNV+I  LC +   +   V +L+ + E+G+     T+ +++  +   G+++ A  I
Sbjct: 438 DVVTYNVLIGALCCKGEVRKA-VKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
              M + R+    +   + ++ +    + D+ +D       L N         +L K   
Sbjct: 497 RTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAND-------LLNE--------MLDKCLV 541

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           PN   Y T+ +G M +G   D +R     +  E+ AS
Sbjct: 542 PNGITYETIKEGMMEKGYTPD-IRGCTVSQASENPAS 577


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 21/310 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K   P   IYT L++G   E R+S+   M   MR   ++   P+  TY T++    K
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMR---NSGMLPNLYTYNTMMDGYCK 275

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              + +A ++  EM   G+  N +T+ IL+ G C+  ++  A++ L +MA    + P++ 
Sbjct: 276 IAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV-PNIF 334

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            YN LIDG+    + + AL+  +E+    I P   +Y+ L+K      + + A+ +  EM
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            +   +  + V +N L++GYC+ G +E+A  +  +M E G  PN+ T+ +L +G   A K
Sbjct: 395 KKKGFLP-NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
              A+ L+ E+                +   L PD     AL D   +    ++A  +  
Sbjct: 454 MEAAMGLYTEM----------------VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 504 CMEEHGIPPN 513
            M+E G+ PN
Sbjct: 498 EMQEAGLHPN 507



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 5/234 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +  +PN   Y TL+ G   +G      R+   M  ++     P  V YT ++  L  
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKK---IFPTVVIYTILIRGLCG 240

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +  A  +   M   G+  N  TYN ++ GYC+   + KA EL +EM  D  + P+VV
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLL-PNVV 299

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++ ILIDG    D+   A  F  +M + G+ P    Y  L+  +  +     A  +  E 
Sbjct: 300 TFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSE- 358

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +    +  D+  +++L++G C +  +EEA  +++ MK+ GF PN  TY +L +G
Sbjct: 359 IEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 107/479 (22%), Positives = 180/479 (37%), Gaps = 91/479 (18%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D  P   A N VL+     G+     +++  M   GA P+V+TY  +I  C R       
Sbjct: 153 DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR------------D 160
             + + ++E  I   +  +  L+    G   +  AE++ + MR                 
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG 272

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT------------ 208
            CKI       +   E  GD          LLPN +        L KT            
Sbjct: 273 YCKIAHVKKALELYQEMLGDG---------LLPNVVTFGILIDGLCKTDEMVSARKFLID 323

Query: 209 -----FAPNSRIYTTLMKGYMNEGRVSDTVRML--------------------------- 236
                  PN  +Y  L+ GY   G +S+ + +                            
Sbjct: 324 MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDR 383

Query: 237 -----GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
                G ++  +     P+ VTY T++    K G+M++A +V ++MT  G+  N IT++ 
Sbjct: 384 MEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ GYC+  +++ A  L  EM     + PDVV+Y  LIDG     ++  A     EM+  
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVF----------------DEMLRDPRVKVDIVA 395
           G+ P   + + L+       +   A K+F                D  L  P    + V 
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSP----NHVM 558

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           +  L++G C  G + +A +    M+ +G  P+V T   +  G   A    + ++L  +I
Sbjct: 559 YTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADI 617



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 128/284 (45%), Gaps = 23/284 (8%)

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           V+  LVK G  D   +V  +M   G   N +TY  L+ G C+Q    KA  L  EM +  
Sbjct: 164 VLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEK- 222

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           KI P VV Y ILI G       + A + F  MR  G+ P   +Y T+M  +   +  K A
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            +++ EML D  +  ++V + +L++G C+   +  A++ +  M   G  PN+  Y  L +
Sbjct: 283 LELYQEMLGDGLLP-NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLID 341

Query: 437 GISLARKPGEALLLWKEIKERCEVKKE------------GVN----ADSDLPPPLK---- 476
           G   A    EAL L  EI E+ E+  +            GV+    AD  L    K    
Sbjct: 342 GYCKAGNLSEALSLHSEI-EKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL 400

Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           P+    + L D   +     KA+E+ + M E GI PN   +  +
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/482 (21%), Positives = 205/482 (42%), Gaps = 75/482 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR------------VRKFSDP 48
           M+  G  P+V  + T++      GD   +++ +LFD ++++            +R     
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGD--FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGE 241

Query: 49  DIVSDSK------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
             +S+++            P+   YN +++    +   KK L+L+ +M   G  P+V+T+
Sbjct: 242 SRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTF 301

Query: 97  NVMI-KLCAR----ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
            ++I  LC      ++RK L+      +   G+   +  +  L+  Y   G+L  A ++ 
Sbjct: 302 GILIDGLCKTDEMVSARKFLI-----DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 152 QAMREGRRDVCKIIREL--DLEDYSSENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
             + +          E+  D+  YS   +G    D  E  + LL           +  K 
Sbjct: 357 SEIEK---------HEILPDVFTYSILIKGLCGVDRMEEADGLLQE---------MKKKG 398

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F PN+  Y TL+ GY  EG +   + +   M    +    P+ +T++T++    KAG M+
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM---TEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +  EM   G+  + + Y  L+ G+ +     +A  L +EM  +A + P+V + + L
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM-QEAGLHPNVFTLSCL 514

Query: 329 IDGFILIDDSAGALTFF-------------NEMRARGIAPTKISYTTLMKAFALSSQPKL 375
           IDG       + A+  F             NE+     +P  + YT L++      +   
Sbjct: 515 IDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFK 574

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A+K F +M R   ++ D+    ++++G+ R   + +   +   + + G  PN + Y  LA
Sbjct: 575 ASKFFSDM-RCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLA 633

Query: 436 NG 437
            G
Sbjct: 634 KG 635



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 123/293 (41%), Gaps = 38/293 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y+ ++     + + ++   L  +M + G  P+ +TYN +I    +       + V
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL--DLEDY 173
             ++ E GI   + TF +L+  Y   G +E A  +   M         +I+ L  D+  Y
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM---------VIKGLLPDVVAY 476

Query: 174 SSENEGD--DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           ++  +G   D +  E F               +      PN    + L+ G   +GR+SD
Sbjct: 477 TALIDGHFKDGNTKEAFRL----------HKEMQEAGLHPNVFTLSCLIDGLCKDGRISD 526

Query: 232 TVRMLGAMRRQEDNAS----------HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
            +++  A    +   S           P+HV YT ++  L   G + +A +  ++M   G
Sbjct: 527 AIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSG 586

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAK--IEPDVVSYNILIDGF 332
           +  +  T  ++++G+ + + +   ++++   AD  K  I P+   Y +L  G+
Sbjct: 587 LRPDVFTCIVIIQGHFRAMHL---RDVMMLQADILKMGIIPNSSVYRVLAKGY 636


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 132/253 (52%), Gaps = 6/253 (2%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ + F P+   Y+ L+ G   EGR+ + + + G M +    +  P+ VTY +++S   +
Sbjct: 115 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS--GSCMPNTVTYNSLISGFCR 172

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G MD A  +L  M   G   + +TY  L+ G+C+  ++D A +LL +M     + P+VV
Sbjct: 173 MGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG-LTPNVV 231

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++  L+DG    +  + A+    EMR +  +PT  +Y T++  +   +Q + A K    M
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKF---M 288

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           L +     ++V++N+++ G C++    EA  ++E  +     P+V  Y ++ + +   +K
Sbjct: 289 LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKK 348

Query: 444 PGEALLLWKEIKE 456
             EA  +++++ E
Sbjct: 349 VDEACRVYRKMLE 361



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 145/339 (42%), Gaps = 57/339 (16%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           + S   PD   Y  ++       K    L++F+Q+   G +PDV+TY+ +I    +  R 
Sbjct: 81  VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRL 140

Query: 110 HLLVFVLERILEMGITLCMT-TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
              + +  R+++ G  +  T T+ SL++ +   G ++      +AM              
Sbjct: 141 KEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD------EAM-------------- 180

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
                                 LL       S P ++          YTTLM G+    R
Sbjct: 181 ---------------------NLLERMAETGSSPDVV---------TYTTLMNGFCKLAR 210

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           + D   +L  M R+      P+ VT+T+++  L +   +  A  +L EM R        T
Sbjct: 211 LDDAYDLLNQMTRK---GLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 267

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YN +L GYC+  Q+++A++ + E  D     P+VVS+NI+I G   ++ S+ A+    E 
Sbjct: 268 YNTILDGYCRVNQLEEARKFMLEEMD---CPPNVVSFNIMIRGLCKVNRSSEAMELVEEA 324

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           R R   P  + YTT++       +   A +V+ +ML +P
Sbjct: 325 RRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEP 363



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           +TYN L+ G C+  +  +A +LL EM     I PD+ +Y  LI GF     S  AL  F 
Sbjct: 55  VTYNSLISGLCKAERASEAYDLLEEMVYSGCI-PDIFTYTTLITGFCKSKKSDDALRVFE 113

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           ++ ARG  P  ++Y+ L+       + K A  +F  M++      + V +N L+ G+CRM
Sbjct: 114 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 173

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGIS-LAR 442
           G ++EA  ++ERM E G  P+V TY +L NG   LAR
Sbjct: 174 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 210



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 60/344 (17%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P +  Y +L+ G     R S+   +L  M     +   PD  TYTT+++   K+   D A
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVY---SGCIPDIFTYTTLITGFCKSKKSDDA 108

Query: 271 RQVLAEMTRIG------------------------------------VPANRITYNILLK 294
            +V  ++   G                                       N +TYN L+ 
Sbjct: 109 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 168

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G+C+  ++D+A  LL  MA+     PDVV+Y  L++GF  +     A    N+M  +G+ 
Sbjct: 169 GFCRMGKMDEAMNLLERMAETGS-SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 227

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P  +++T+LM      ++   A  +  EM R       +  +N +++GYCR+  +EEA++
Sbjct: 228 PNVVTFTSLMDGLCRENRLSDAVHILGEMRRKS-CSPTVYTYNTILDGYCRVNQLEEARK 286

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
            +  ++E    PNV ++  +  G+    +  EA+ L +E + R                 
Sbjct: 287 FM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR----------------R 328

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACM-EEHGIPPNKTKY 517
             PD  +   + D+  R     +A  +   M EE G  PN   Y
Sbjct: 329 CNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITY 372



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 132/304 (43%), Gaps = 22/304 (7%)

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           +D    P  VTY +++S L KA     A  +L EM   G   +  TY  L+ G+C+  + 
Sbjct: 46  QDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS 105

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYT 361
           D A  +  ++       PDVV+Y+ LIDG         A+  F  M   G   P  ++Y 
Sbjct: 106 DDALRVFEQLVARG-FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYN 164

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           +L+  F    +   A  + + M  +     D+V +  L+ G+C++  +++A  ++ +M  
Sbjct: 165 SLISGFCRMGKMDEAMNLLERMA-ETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 223

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
            G  PNV T+ SL +G+    +  +A+ +  E++ +               P +     +
Sbjct: 224 KGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRK------------SCSPTVYTYNTI 271

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDR 541
           LD       R     +A + +  +EE   PPN   +  I +    ++  S  A +  ++ 
Sbjct: 272 LDGYC----RVNQLEEARKFM--LEEMDCPPNVVSF-NIMIRGLCKVNRSSEAMELVEEA 324

Query: 542 RRER 545
           RR R
Sbjct: 325 RRRR 328



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 33/289 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V  +S ++  L   G     E++ LF  ++K               P+T  YN++
Sbjct: 119 GFRPDVVTYSCLIDGLCKEGRLK--EAIDLFGRMIKS----------GSCMPNTVTYNSL 166

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++    +GK  + + L ++M E G+ PDV+TY  ++    + +R      +L ++   G+
Sbjct: 167 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 226

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
           T  + TF SL+        L  A  I+  MR              L+ Y   N+ ++   
Sbjct: 227 TPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARK 286

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             + E   P                 PN   +  +++G     R S+ + ++   RR+  
Sbjct: 287 FMLEEMDCP-----------------PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRC 329

Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-TRIGVPANRITYNIL 292
           N   PD V YTTV+  L +   +D A +V  +M    G   N ITY+  
Sbjct: 330 N---PDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 193/443 (43%), Gaps = 71/443 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L +G+  +V  ++ ++++    G+    +  K+FD + KR             +P   +
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQ--KVFDEITKR-----------SLQPTVVS 277

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++N    +G   +  +L  QM +   +PDV TY+ +I    + ++      + + + 
Sbjct: 278 FNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMC 337

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+      F +L+  +   G++++ +   Q M                          
Sbjct: 338 KRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM-------------------------- 371

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   L K   P+  +Y TL+ G+   G +     ++  M 
Sbjct: 372 ------------------------LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R+      PD +TYTT++    + G ++ A ++  EM + G+  +R+ ++ L+ G C++ 
Sbjct: 408 RR---GLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEG 464

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++  A+  LREM   A I+PD V+Y +++D F    D+        EM++ G  P+ ++Y
Sbjct: 465 RVIDAERALREML-RAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTY 523

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+       Q K A+ + D ML    V  DI  +N L+EG+ R      +KR I++  
Sbjct: 524 NVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDI-TYNTLLEGHHRHA--NSSKRYIQK-P 579

Query: 421 ENGFYPNVATYGSLANGISLARK 443
           E G   ++A+Y S+ N +  A K
Sbjct: 580 EIGIVADLASYKSIVNELDRASK 602



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 22/293 (7%)

Query: 245 NASHPDHV-TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           +A  P +V  +  +++   K G++  A++V  E+T+  +    +++N L+ GYC+   +D
Sbjct: 233 DAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLD 292

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +   L  +M + ++  PDV +Y+ LI+     +   GA   F+EM  RG+ P  + +TTL
Sbjct: 293 EGFRLKHQM-EKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTL 351

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +   + + +  L  + + +ML    ++ DIV +N LV G+C+ G +  A+ I++ M   G
Sbjct: 352 IHGHSRNGEIDLMKESYQKML-SKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEVKKEGVNADSD 470
             P+  TY +L +G         AL + KE+ +              C + KEG   D++
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAE 470

Query: 471 ------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                 L   +KPD+     + D   +    +   +++  M+  G  P+   Y
Sbjct: 471 RALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTY 523



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 20/212 (9%)

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+D  + ++ +     F+ E+   G       +  LM  F        A KVFDE+ +  
Sbjct: 211 LLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRS 270

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            ++  +V++N L+ GYC++G ++E  R+  +M+++   P+V TY +L N +    K   A
Sbjct: 271 -LQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGA 329

Query: 448 LLLWKEIKERCEVKKEGV----------NADSD---------LPPPLKPDEELLDALADI 488
             L+ E+ +R  +  + +          N + D         L   L+PD  L + L + 
Sbjct: 330 HGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNG 389

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             +      A  IV  M   G+ P+K  Y  +
Sbjct: 390 FCKNGDLVAARNIVDGMIRRGLRPDKITYTTL 421


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 190/423 (44%), Gaps = 32/423 (7%)

Query: 36  DVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG---AKPD 92
           D++++R+ +F           +  +YN +L    N  + ++ L+L   M + G     P+
Sbjct: 149 DILLRRMPEFG-------CTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPN 201

Query: 93  VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIV 151
           V+TY  +I    +A        V + +++ G+     T+  L+  Y+  G   E+ + + 
Sbjct: 202 VVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQ 261

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           +    G +  C I   L   DY  +N G   +   +F+ L+   I P             
Sbjct: 262 EMSTHGLQPDCVIYAVL--LDYLCKN-GRCTEARNIFDSLIRKGIKP------------- 305

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +  IY  L+ GY  EG +S+    L  M R   N   PDH  +  + +A  K   +D A 
Sbjct: 306 HVTIYGILLHGYATEGALSEMHSFLDLMVR---NGVSPDHHIFNIMFNAYAKKAMIDEAM 362

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +  +M +  +    + Y  L+   C+  ++D A     +M ++  + PD+  ++ L+ G
Sbjct: 363 HIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEG-VTPDIFVFSSLVYG 421

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
              +D    A   F E+  +GI      +  LM       +   A ++ D MLR   V+ 
Sbjct: 422 LCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLR-VDVRP 480

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D++++N LV+G+C  G ++EA ++++ M   G  P+  TY +L +G   AR+  +A  L+
Sbjct: 481 DVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLF 540

Query: 452 KEI 454
           +E+
Sbjct: 541 REM 543



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 112/527 (21%), Positives = 214/527 (40%), Gaps = 52/527 (9%)

Query: 6   YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVL 65
           + P+V  ++TV+  L  +              +V R +      I    +P+   Y  ++
Sbjct: 198 HTPNVVTYTTVIDGLCKAQ-------------MVDRAKGVFQHMIDKGVRPNNHTYTCLI 244

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT 125
           +   + GK K+ +Q+  +M   G +PD + Y V++    +  R      + + ++  GI 
Sbjct: 245 HGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIK 304

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
             +T +  L+  Y   G L    + +  M          I  +    Y+ +     D+  
Sbjct: 305 PHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKK--AMIDEAM 362

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            +F+K+    ++P                 Y  L+      GRV D V     M  +   
Sbjct: 363 HIFDKMRQQWLSPGVVN-------------YGALIDALCKLGRVDDAVLKFNQMINE--- 406

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD   ++++V  L      ++A ++  E+   G+  N   +NIL+   C++ ++ +A
Sbjct: 407 GVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEA 466

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           + L+  M     + PDV+SYN L+DG  L      A    + M + G+ P + +Y TL+ 
Sbjct: 467 QRLIDLMLR-VDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLH 525

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            +  + +   A  +F EML    +   +V +N ++ G  ++G   EAK +   M  N   
Sbjct: 526 GYCKARRIDDAYSLFREMLMKG-LTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRK 584

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER-------------CEVKKEGVNADS-DL 471
            ++ TY  + NG+       EA  +++ +  +               + K G   D+ DL
Sbjct: 585 CDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDL 644

Query: 472 PPP-----LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                   L PD E    +A+  ++     +  E+ + MEE+G  PN
Sbjct: 645 FATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPN 691



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 168/438 (38%), Gaps = 68/438 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++R G  PHV  +  ++   A  G              +  +  F D  + +   PD   
Sbjct: 298 LIRKGIKPHVTIYGILLHGYATEG-------------ALSEMHSFLDLMVRNGVSPDHHI 344

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N + NA A      + + +FD+M +    P V+ Y  +I    +  R    V    +++
Sbjct: 345 FNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMI 404

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+T  +  F SLV         E AE +                              
Sbjct: 405 NEGVTPDIFVFSSLVYGLCTVDKWEKAEKLF----------------------------- 435

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                  FE              +L +    N+  +  LM     EGRV +  R++  M 
Sbjct: 436 -------FE--------------VLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLML 474

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R +     PD ++Y T+V      G +D A ++L  M  IG+  +  TYN LL GYC+  
Sbjct: 475 RVD---VRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKAR 531

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +ID A  L REM     + P VV+YN ++ G   I     A   +  M          +Y
Sbjct: 532 RIDDAYSLFREMLMKG-LTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTY 590

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
           T ++     ++    A K+F + L    +++DI   N+++    + G  E+A  +   + 
Sbjct: 591 TIILNGLCRNNFVDEAFKMF-QSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATIS 649

Query: 421 ENGFYPNVATYGSLANGI 438
             G  P+V TY  +A  +
Sbjct: 650 AYGLVPDVETYRLIAENL 667



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 114/511 (22%), Positives = 212/511 (41%), Gaps = 91/511 (17%)

Query: 78  LQLFDQMHEFGAKPDVLTYNVMIKLCARA---SRKHLLVFVLERIL---EMGITLCMTTF 131
           L+LFD+M  +     V T+N ++ + +RA   S   L+V +  R++    + +     T+
Sbjct: 36  LKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVKVAPSSCTY 95

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
             L+  +   G L          + G      I++            G   ++  +F +L
Sbjct: 96  TILIGCFCRMGRL----------KHGFAAFGLILKT-----------GWSLNNTVIFGQL 134

Query: 192 LPN-----SINPSSEPPL--LPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
           L        ++ +++  L  +P+     + I Y  L+KG  NE R  + + ++  M    
Sbjct: 135 LKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDG 194

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           D +  P+ VTYTTV+  L KA  +DRA+ V   M   GV  N  TY  L+ GY    +  
Sbjct: 195 DGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWK 254

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGF-----------------------------IL 334
           +  ++L+EM+    ++PD V Y +L+D                               IL
Sbjct: 255 EVVQMLQEMSTHG-LQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGIL 313

Query: 335 IDDSA--GALT----FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           +   A  GAL+    F + M   G++P    +  +  A+A  +    A  +FD+M R   
Sbjct: 314 LHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKM-RQQW 372

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +   +V +  L++  C++G V++A     +M   G  P++  + SL  G+    K  +A 
Sbjct: 373 LSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAE 432

Query: 449 LLWKEIKER-------------CEVKKEGVNADSD------LPPPLKPDEELLDALADIC 489
            L+ E+ ++             C + +EG   ++       L   ++PD    + L D  
Sbjct: 433 KLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGH 492

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                  +A +++  M   G+ P++  Y  +
Sbjct: 493 CLTGRIDEAAKLLDVMVSIGLKPDEFTYNTL 523



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 116/293 (39%), Gaps = 23/293 (7%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V   ++  D  +  D +PD  +YN +++     G+  +  +L D M   G KPD  TYN 
Sbjct: 463 VMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNT 522

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           ++    +A R      +   +L  G+T  + T+ +++      G    A+ +   M   R
Sbjct: 523 LLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNR 582

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDD--DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
           R       + D+  Y+    G   ++  DE F+              L    F  N  I 
Sbjct: 583 R-------KCDIYTYTIILNGLCRNNFVDEAFKMF-----QSLCSKDLQLDIFTINIMI- 629

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             L+KG    GR  D + +   +         PD  TY  +   L+K GS++   ++ + 
Sbjct: 630 GALLKG----GRKEDAMDLFATISAY---GLVPDVETYRLIAENLIKEGSLEELDELFSA 682

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           M   G   N    N L++    +  I +A   L ++ D+     +  + ++LI
Sbjct: 683 MEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKL-DEKNFSLEASTTSMLI 734


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 212/486 (43%), Gaps = 58/486 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+G  P V  +ST +  L   G              V+    F    I ++   +   
Sbjct: 281 MERNGESPTVVTYSTYIYGLCRVG-------------YVESALDFVRSLISANGLVNVYC 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA+++     G+  + L++ ++M   G  PDV TY+++I    +       ++++E + 
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMK 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
              +   + ++ SL   + G     +++  +   R    D+     + D   YS      
Sbjct: 388 YSNMEPSLVSYSSL---FHGLCKKRLSDISLDIFR----DLGAAGYKYDQTAYSILIKGF 440

Query: 177 -NEGDDDDDDEVFEKLLPNSI--NPSSEPPL--------------------LPKTFAPNS 213
             +GD D   ++ E+++ N++  +PS+   L                    L     P+ 
Sbjct: 441 CMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSI 500

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
                ++  +  EGRV + + ++  M+ Q      P+  TY  V++ L K    +RA ++
Sbjct: 501 ATCNVIIDAHCREGRVEEALNLMNEMQTQ---GIFPNLFTYNAVINRLCKERKSERALEL 557

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
              M +  V  + + Y+ L+ G+ +Q    KA  L   M     + PD+V+Y ILI+   
Sbjct: 558 FPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIG-VTPDMVAYTILINILC 616

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
                  A   F +M   G+ P KISYT+++  F      + A  +F+EML+   +   +
Sbjct: 617 HRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPT-V 675

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG---EALLL 450
           V +  LV+GYC+M  ++ A  +I+ MK  G  P+V TY  L   I+  R+ G   +AL +
Sbjct: 676 VTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVL---IAAHRRRGNLDKALEM 732

Query: 451 WKEIKE 456
             E+KE
Sbjct: 733 LNEMKE 738



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 128/561 (22%), Positives = 225/561 (40%), Gaps = 111/561 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVK----RVRKFSDPDIVSDSKP 56
           M + G+   + A+ TVV+ LA +G    V ++ L D+V       +  F    I+ +S  
Sbjct: 115 MKKYGFSRSIDAFRTVVNVLALAGMHMEVYAL-LRDIVCYYNKVNLDAFELFPILLESPK 173

Query: 57  DTAAYNAVLNACANLGKPKKFLQ----LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D A    V +    +      L+    +F Q  + G +    + N ++K  A A+R+  L
Sbjct: 174 DAARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFL 233

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYV--GFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             + E +   G    + T+  ++  Y    FG+ +I            R   +I+ E+  
Sbjct: 234 RSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADI----------DTRQATEILEEM-- 281

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                E  G+                             +P    Y+T + G    G V 
Sbjct: 282 -----ERNGE-----------------------------SPTVVTYSTYIYGLCRVGYVE 307

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
                L  +R         +   Y  ++  L K G +D A +VL EM   G+  +  TY+
Sbjct: 308 SA---LDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYS 364

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           IL+ G+C+Q  ++K   L+ EM   + +EP +VSY+ L  G      S  +L  F ++ A
Sbjct: 365 ILIHGFCKQGDVEKGLYLIEEM-KYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGA 423

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR-----DPR----------------- 388
            G    + +Y+ L+K F +      A+K+ +EM+R     DP                  
Sbjct: 424 AGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVN 483

Query: 389 ------------VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
                       +   I   N++++ +CR G VEEA  ++  M+  G +PN+ TY ++ N
Sbjct: 484 ALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVIN 543

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
            +   RK   AL L+  + +R            ++ P +     L+D  A    + +  +
Sbjct: 544 RLCKERKSERALELFPLMLKR------------NVLPSVVVYSTLIDGFA----KQSNSQ 587

Query: 497 KALEIVACMEEHGIPPNKTKY 517
           KAL + A M + G+ P+   Y
Sbjct: 588 KALMLYARMLKIGVTPDMVAY 608



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 150/360 (41%), Gaps = 32/360 (8%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           +GY     A+S ++      GD             +    K  +  + ++  PD + + +
Sbjct: 424 AGYKYDQTAYSILIKGFCMQGD-------------LDSAHKLMEEMVRNNLAPDPSNFES 470

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +++    +G     L+ F+ M E G  P + T NV+I    R  R    + ++  +   G
Sbjct: 471 LVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQG 530

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I   + T+ +++         E A  +   M   +R+V        +  YS+  +G    
Sbjct: 531 IFPNLFTYNAVINRLCKERKSERALELFPLML--KRNVLP-----SVVVYSTLIDG---- 579

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
               F K   +         +L     P+   YT L+    +  R+ +   +    ++  
Sbjct: 580 ----FAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLF---KKMT 632

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           +N   PD ++YT+V++   + G M +A  +  EM + G     +TY  L+ GYC+  +ID
Sbjct: 633 ENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRID 692

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            A  L+ EM     I PDVV+YN+LI       +   AL   NEM+  G+ P  ++Y  L
Sbjct: 693 IADMLIDEMKRKG-ITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMML 751



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 119/292 (40%), Gaps = 66/292 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P++  ++ V++RL    +     +++LF +++KR           +  P    
Sbjct: 526 MQTQGIFPNLFTYNAVINRLCK--ERKSERALELFPLMLKR-----------NVLPSVVV 572

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++  A     +K L L+ +M + G  PD++ Y ++I +    SR      + +++ 
Sbjct: 573 YSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMT 632

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G+T    ++ S++A +   GD+  A  +   M                          
Sbjct: 633 ENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEM-------------------------- 666

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   L +   P    YT+L+ GY    R+     ++  M+
Sbjct: 667 ------------------------LQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMK 702

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           R+      PD VTY  +++A  + G++D+A ++L EM   GV  + +TY +L
Sbjct: 703 RK---GITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMML 751


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 21/310 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K   P   IYT L++G   E R+S+   M   MR   ++   P+  TY T++    K
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMR---NSGMLPNLYTYNTMMDGYCK 275

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              + +A ++  EM   G+  N +T+ IL+ G C+  ++  A++ L +MA    + P++ 
Sbjct: 276 IAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV-PNIF 334

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            YN LIDG+    + + AL+  +E+    I P   +Y+ L+K      + + A+ +  EM
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            +   +  + V +N L++GYC+ G +E+A  +  +M E G  PN+ T+ +L +G   A K
Sbjct: 395 KKKGFLP-NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
              A+ L+ E+                +   L PD     AL D   +    ++A  +  
Sbjct: 454 MEAAMGLYTEM----------------VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 504 CMEEHGIPPN 513
            M+E G+ PN
Sbjct: 498 EMQEAGLHPN 507



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 189/407 (46%), Gaps = 36/407 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D  P   A N VL+     G+     +++  M   GA P+V+TY  +I  C R       
Sbjct: 153 DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             + + ++E  I   +  +  L+    G   +  AE++ + MR             +L  
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLP-------NLYT 265

Query: 173 YSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y++  +G           E+++++L + +              PN   +  L+ G     
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGL-------------LPNVVTFGILIDG----- 307

Query: 228 RVSDTVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
            +  T  M+ A +   D AS    P+   Y  ++    KAG++  A  + +E+ +  +  
Sbjct: 308 -LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILP 366

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           +  TY+IL+KG C   ++++A  LL+EM     + P+ V+YN LIDG+    +   A+  
Sbjct: 367 DVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL-PNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
            ++M  +GI P  I+++TL+  +  + + + A  ++ EM+    +  D+VA+  L++G+ 
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLP-DVVAYTALIDGHF 484

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           + G  +EA R+ + M+E G +PNV T   L +G+    +  +A+ L+
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 179/432 (41%), Gaps = 87/432 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR------------VRKFSDP 48
           M+  G  P+V  + T++      GD   +++ +LFD ++++            +R     
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGD--FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGE 241

Query: 49  DIVSDSK------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
             +S+++            P+   YN +++    +   KK L+L+ +M   G  P+V+T+
Sbjct: 242 SRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTF 301

Query: 97  NVMI-KLCAR----ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
            ++I  LC      ++RK L+      +   G+   +  +  L+  Y   G+L  A ++ 
Sbjct: 302 GILIDGLCKTDEMVSARKFLI-----DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 152 QAMREGRRDVCKIIREL--DLEDYSSENEG-DDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
             + +          E+  D+  YS   +G    D  E  + LL           +  K 
Sbjct: 357 SEIEK---------HEILPDVFTYSILIKGLCGVDRMEEADGLLQE---------MKKKG 398

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F PN+  Y TL+ GY  EG +   + +   M    +    P+ +T++T++    KAG M+
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM---TEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +  EM   G+  + + Y  L+ G+ +     +A  L +EM  +A + P+V + + L
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM-QEAGLHPNVFTLSCL 514

Query: 329 IDGFILIDDSAGALTFF-------------NEM-------------RARGIAPTKISYTT 362
           IDG       + A+  F             NE+               RGI+   I    
Sbjct: 515 IDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLYQMCSLALSLFRGISEPCICVIR 574

Query: 363 LMKAFALSSQPK 374
           + K FA ++QPK
Sbjct: 575 VTKLFATNNQPK 586



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 140/311 (45%), Gaps = 23/311 (7%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K +A    +   L++   N  R      +   + R E +   P+   +  ++ A  + G 
Sbjct: 84  KLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPN--VFGVLIIAFSEMGL 141

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           ++ A  V  +M  +  PA +   N++L G  ++ + D   ++  +M       P+VV+Y 
Sbjct: 142 VEEALWVYYKMDVL--PAMQAC-NMVLDGLVKKGRFDTMWKVYGDMVARGA-SPNVVTYG 197

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LIDG     D   A   F+EM  + I PT + YT L++     S+   A  +F  M R+
Sbjct: 198 TLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTM-RN 256

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +  ++  +N +++GYC++  V++A  + + M  +G  PNV T+G L +G+        
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLC------- 309

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
                 +  E    +K  ++  S     + P+  + + L D   +A    +AL + + +E
Sbjct: 310 ------KTDEMVSARKFLIDMAS---FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 507 EHGIPPNKTKY 517
           +H I P+   Y
Sbjct: 361 KHEILPDVFTY 371



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 26/287 (9%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P   + T+L+  Y   G V+D   M        D     + +++T+V+SA V     +
Sbjct: 662 FEPIIFLQTSLISMYSATGNVADAHNMF-------DEIPSKNLISWTSVISAYVDNQRPN 714

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A Q+  +M    V  + +T  + L   C  L      E +        ++ D+   N L
Sbjct: 715 KALQLFRQMQMDDVQPDIVTVTVALSA-CADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 773

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+ +    +   A  F        + P  +++  ++ A + +   +   + F  M  D  
Sbjct: 774 INMYSKCGEIGTARRF------SLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYS 827

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           ++  I  +  +V+  CR GL+ EA   I +M      PN   + +L    SL     + +
Sbjct: 828 LRPRISHFGCMVDLLCRAGLLTEAYEFILKMPVR---PNAVVWRTLLGACSLQGMWDKKM 884

Query: 449 LLWKEIKER----CEVKKEGVN-----ADSDLPPPLKPDEELLDALA 486
           L+  +IK+R    C   + G++     A  D  P +    E+LD L 
Sbjct: 885 LVRNQIKQRRDPGCSSIEVGIDIKEFVAADDQHPCMPQIYEILDHLT 931


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 144/307 (46%), Gaps = 21/307 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   YT L+ GY   G+      ++G MRR       P+  TY  +V    + G    A
Sbjct: 71  PNEVTYTALIHGYFVRGQREMGFALVGEMRR---GGVEPNLYTYNCLVGEWCRTGEFKSA 127

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R +  EM   GV  N ++YNIL+ G C+  ++  A +L   M  +  I P +V++N+LID
Sbjct: 128 RLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREG-IHPSMVTFNLLID 186

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G+      + AL FFN+M+A G+ P+ ++Y  L+  F  +     A + F +M ++ R+ 
Sbjct: 187 GYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDM-KERRLA 245

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
              V + +L+  + +   ++ A  ++  M++ G   +V +YG L + + +  K   A  L
Sbjct: 246 PTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKL 305

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           ++ +  +                 +KP+  L D +     R     KAL ++  M + G+
Sbjct: 306 FQSMDSK----------------GVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGL 349

Query: 511 PPNKTKY 517
            PN   Y
Sbjct: 350 IPNVASY 356



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 2/208 (0%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D    T +V    ++G +  AR+V   M R+GV  N +TY  L+ GY  + Q +    L+
Sbjct: 37  DVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALV 96

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
            EM     +EP++ +YN L+  +    +   A   F+EM  +G+    +SY  L+     
Sbjct: 97  GEMRRGG-VEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCR 155

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             + K A ++F+ M R+  +   +V +N+L++GY + G +  A     +MK  G  P+V 
Sbjct: 156 HGKLKDAAQLFEAMRREG-IHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVV 214

Query: 430 TYGSLANGISLARKPGEALLLWKEIKER 457
           TY  L  G   AR    A+  + ++KER
Sbjct: 215 TYNELIGGFCRARDIAHAIRAFSDMKER 242



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 156/381 (40%), Gaps = 57/381 (14%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKH 110
            D+  D AA  A+++ C   G   +  ++FD M   G  P+ +TY  +I     R  R+ 
Sbjct: 32  GDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREM 91

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
               V E +   G+   + T+  LV  +   G+ + A  +   M    + V + +   ++
Sbjct: 92  GFALVGE-MRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMP--LKGVVRNVVSYNI 148

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   G   D  ++FE +    I+PS                +  L+ GY   G++S
Sbjct: 149 LIAGLCRHGKLKDAAQLFEAMRREGIHPSMVT-------------FNLLIDGYGKAGKMS 195

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           + +     M+        P  VTY  ++    +A  +  A +  ++M    +   ++TY 
Sbjct: 196 NALHFFNQMKAA---GLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYT 252

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           IL+  + ++ ++D+A E+L EM + A +E DV SY +L+    +      A   F  M +
Sbjct: 253 ILIGAFAKENEMDRAFEMLSEM-EKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDS 311

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G+ P  + Y                                    +M++ GY R G   
Sbjct: 312 KGVKPNNVLY------------------------------------DMMIYGYGREGSSY 335

Query: 411 EAKRIIERMKENGFYPNVATY 431
           +A R+I  M+++G  PNVA+Y
Sbjct: 336 KALRLIMEMRKSGLIPNVASY 356



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 157/374 (41%), Gaps = 32/374 (8%)

Query: 10  VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACA 69
           V A + +V     SGD    E+ ++FDV+         P +     P+   Y A+++   
Sbjct: 38  VAACTALVHGCCQSGD--VAEARRVFDVM---------PRL--GVTPNEVTYTALIHGYF 84

Query: 70  NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT 129
             G+ +    L  +M   G +P++ TYN ++    R         + + +   G+   + 
Sbjct: 85  VRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVV 144

Query: 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFE 189
           ++  L+A     G L+ A  + +AMR        +   L ++ Y     G   +    F 
Sbjct: 145 SYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYG--KAGKMSNALHFFN 202

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
           ++    + PS                Y  L+ G+     ++  +R    M+ +      P
Sbjct: 203 QMKAAGLQPSVVT-------------YNELIGGFCRARDIAHAIRAFSDMKERR---LAP 246

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
             VTYT ++ A  K   MDRA ++L+EM + G+  +  +Y +LL   C + ++  A++L 
Sbjct: 247 TKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLF 306

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           + M D   ++P+ V Y+++I G+     S  AL    EMR  G+ P   SY   ++    
Sbjct: 307 QSM-DSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCLTIRLLCN 365

Query: 370 SSQPKLANKVFDEM 383
             + + A  +  +M
Sbjct: 366 EGKCQEAEALIGDM 379



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 21/156 (13%)

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG--ISLARKPGEAL 448
           +D+ A   LV G C+ G V EA+R+ + M   G  PN  TY +L +G  +   R+ G AL
Sbjct: 36  LDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFAL 95

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
           +         E+++ GV          +P+    + L     R   F+ A  +   M   
Sbjct: 96  V--------GEMRRGGV----------EPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLK 137

Query: 509 GIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRE 544
           G+  N   Y  I +    R    K A+Q  +  RRE
Sbjct: 138 GVVRNVVSY-NILIAGLCRHGKLKDAAQLFEAMRRE 172


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 151/309 (48%), Gaps = 21/309 (6%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN   Y+ LM G+  +G   +  +M   M+R   +   P+   Y  ++S     G +D
Sbjct: 224 LVPNPHTYSVLMNGFFKQGLQREGFQMYENMKR---SGIVPNAYAYNCLISEYCNDGMVD 280

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A +V AEM   G+    +TYNIL+ G C+  +  +A +L+ ++ +   + P++V+YNIL
Sbjct: 281 KAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV-NKVGLSPNIVTYNIL 339

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+GF  +     A+  FN++++ G++PT ++Y TL+  ++       A  +  EM  +  
Sbjct: 340 INGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM-EERC 398

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +    V + +L++ + R+   E+A  +   M+++G  P+V TY  L +G+ +     EA 
Sbjct: 399 IAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEAS 458

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L+K + E                  L+P+  + + +     +     +AL ++  M + 
Sbjct: 459 KLFKSLGEM----------------HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQS 502

Query: 509 GIPPNKTKY 517
           G+ PN   +
Sbjct: 503 GMVPNVASF 511



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 176/433 (40%), Gaps = 90/433 (20%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  ++  ++  C   G   K  +L   + EFG  P+V+ Y  +I  C +     L   + 
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLF 216

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
            ++  +G+     T+  L+  +                                      
Sbjct: 217 CKMNRLGLVPNPHTYSVLMNGFF------------------------------------- 239

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
            +G   +  +++E +  + I              PN+  Y  L+  Y N+G V    ++ 
Sbjct: 240 KQGLQREGFQMYENMKRSGI-------------VPNAYAYNCLISEYCNDGMVDKAFKVF 286

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             MR +         +TY  ++  L +      A +++ ++ ++G+  N +TYNIL+ G+
Sbjct: 287 AEMREKGIACGV---MTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGF 343

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C   ++D A  L  ++     + P +V+YN LI G+  +++ AGAL    EM  R IAP+
Sbjct: 344 CDVRKMDSAVRLFNQLKSSG-LSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPS 402

Query: 357 KISYTTLMKAFA-----------------------------------LSSQPKLANKVFD 381
           K++YT L+ AFA                                   +    K A+K+F 
Sbjct: 403 KVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFK 462

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
             L +  ++ + V +N ++ GYC+ G    A R++  M ++G  PNVA++ S    +   
Sbjct: 463 S-LGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRD 521

Query: 442 RKPGEALLLWKEI 454
            K  EA LL  ++
Sbjct: 522 EKWKEAELLLGQM 534



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 35/309 (11%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           +  ++KG    G      R+L  +   E+    P+ V YTT++    K G++  A+ +  
Sbjct: 161 FGIMIKGCCEAGYFVKGFRLLAML---EEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFC 217

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-- 333
           +M R+G+  N  TY++L+ G+ +Q  + +    + E    + I P+  +YN LI  +   
Sbjct: 218 KMNRLGLVPNPHTYSVLMNGFFKQ-GLQREGFQMYENMKRSGIVPNAYAYNCLISEYCND 276

Query: 334 -LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA----LSSQPKLANKVFDEMLRDPR 388
            ++D    A   F EMR +GIA   ++Y  L+             KL +KV +++   P 
Sbjct: 277 GMVDK---AFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV-NKVGLSP- 331

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              +IV +N+L+ G+C +  ++ A R+  ++K +G  P + TY +L  G S       AL
Sbjct: 332 ---NIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
            L KE++ERC                + P +     L D   R     KA E+ + ME+ 
Sbjct: 389 DLVKEMEERC----------------IAPSKVTYTILIDAFARLNHTEKACEMHSLMEKS 432

Query: 509 GIPPNKTKY 517
           G+ P+   Y
Sbjct: 433 GLVPDVYTY 441



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 141/331 (42%), Gaps = 54/331 (16%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  AYN +++   N G   K  ++F +M E G    V+TYN++I    R  +    V +
Sbjct: 261 PNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKL 320

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           + ++ ++G++  + T+  L+    GF D                     +R++       
Sbjct: 321 VHKVNKVGLSPNIVTYNILIN---GFCD---------------------VRKM------- 349

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                 D    +F +L  + ++P+                Y TL+ GY    +V +    
Sbjct: 350 ------DSAVRLFNQLKSSGLSPTLVT-------------YNTLIAGY---SKVENLAGA 387

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  ++  E+    P  VTYT ++ A  +    ++A ++ + M + G+  +  TY++LL G
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHG 447

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C    + +A +L + +  +  ++P+ V YN +I G+     S  AL   NEM   G+ P
Sbjct: 448 LCVHGNMKEASKLFKSLG-EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVP 506

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
              S+ + +       + K A  +  +M+  
Sbjct: 507 NVASFCSTIGLLCRDEKWKEAELLLGQMINS 537



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 64/340 (18%)

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIG-VPANRI------------------------- 287
           Y TVV+A V + S D+A   L  M   G VP +                           
Sbjct: 92  YDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELK 151

Query: 288 --------TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
                   ++ I++KG C+     K   LL  M ++  + P+VV Y  LIDG     +  
Sbjct: 152 SKVVLDAYSFGIMIKGCCEAGYFVKGFRLL-AMLEEFGLSPNVVIYTTLIDGCCKDGNVM 210

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A   F +M   G+ P   +Y+ LM  F      +   ++++ M R   V  +  A+N L
Sbjct: 211 LAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVP-NAYAYNCL 269

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-- 457
           +  YC  G+V++A ++   M+E G    V TY  L  G+   +K GEA+ L  ++ +   
Sbjct: 270 ISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGL 329

Query: 458 --------------CEVKKEGVNA-------DSDLPPPLKPDEELLDALADICVRAAFFR 496
                         C+V+K             S L P L     L+   + +   A    
Sbjct: 330 SPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAG--- 386

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536
            AL++V  MEE  I P+K  Y  I ++  +R+  ++ A +
Sbjct: 387 -ALDLVKEMEERCIAPSKVTY-TILIDAFARLNHTEKACE 424


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 175/424 (41%), Gaps = 83/424 (19%)

Query: 44  KFSDPDIVSDSKP---DTAAYNAVLN---------ACANLGKPKKFLQLFDQMHEFGAKP 91
           K   PD++  ++    +  A N VLN             +GK  K  QL  +M   G  P
Sbjct: 396 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 455

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           D  TY+ +I     A++      + + +  +G+T  + T+  L+ ++   G +E A+ + 
Sbjct: 456 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 515

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           + MR                                       S+  S           P
Sbjct: 516 EEMR---------------------------------------SVGCS-----------P 525

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
               YT L+  Y+   +V     +     R  D    P+ VTY  +V  L KAG++ +A 
Sbjct: 526 TVVTYTALIHAYLKAKQVPQANDIF---HRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 582

Query: 272 QVLAEMT----------------RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
           +V A++                 R  +  N +TY  L+ G C+  ++D A ELL  M   
Sbjct: 583 EVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS 642

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
              EP+ + Y+ LIDGF        A   F +M   G  P+  +YT+L+       +  L
Sbjct: 643 G-CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 701

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A KV  +ML+D     ++V +  +++G CR+G  E+A +++  M+E G  PNV TY +L 
Sbjct: 702 AMKVLSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 760

Query: 436 NGIS 439
           +G+ 
Sbjct: 761 DGLG 764



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 9/320 (2%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ V+    +  K +K   LF +M   G  PDV TY ++I    +A       ++
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +  +G +  + T+ +L+ AY+    +  A  I   M +       +     ++    
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC- 573

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSE---PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
              G+     EV+ KL+  S +  S+   P     T APN   Y  L+ G     +V   
Sbjct: 574 -KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHA 632

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +L AM     +   P+H+ Y  ++    KAG +D A++V  +MT+ G   +  TY  L
Sbjct: 633 HELLDAML---SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSL 689

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           +    +  ++D A ++L +M  D+   P+VV+Y  +IDG   I +S  AL   + M  +G
Sbjct: 690 IDRMFKDGRLDLAMKVLSQMLKDS-CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 748

Query: 353 IAPTKISYTTLMKAFALSSQ 372
            +P  ++YT L+     S Q
Sbjct: 749 CSPNVVTYTALIDGLGQSWQ 768



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 124/548 (22%), Positives = 209/548 (38%), Gaps = 111/548 (20%)

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
           N ++  C   G   + L+   ++ +FG +P  +TYN ++++ + A +  L   V + + E
Sbjct: 178 NVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSE 237

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G   CM  F     A+    +   A+ +    RE      K+   L     S   E   
Sbjct: 238 SG--FCMDRFTVGCFAHALCKEGRWADALDMIEREDF----KLDTVLCTHMISGLMEASY 291

Query: 182 DDDDEVF-EKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTT 218
            D+   F  ++  NS  P+                          ++ +   PN  ++ +
Sbjct: 292 FDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNS 351

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA------------------ 260
           L+  Y NE   +   ++L    R       P +V Y   + +                  
Sbjct: 352 LVHSYCNEKDYAYAYKLL---NRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEK 408

Query: 261 -----------------------LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
                                  L   G  D+A Q++ EM R G   +  TY+ ++   C
Sbjct: 409 IYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLC 468

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
              +++KA  L +EM     + PDV +Y ILID F        A   F EMR+ G +PT 
Sbjct: 469 HATKVEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTV 527

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++YT L+ A+  + Q   AN +F  M+ D   + + V +  LV+G C+ G + +A  +  
Sbjct: 528 VTYTALIHAYLKAKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKAFEVYA 586

Query: 418 RM------KENGFY----------PNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           ++       ++ FY          PNV TYG+L +G+  A K   A  L           
Sbjct: 587 KLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL---------- 636

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
                 D+ L    +P+  + DAL D   +A     A E+   M + G  P+       Y
Sbjct: 637 ------DAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS----VHTY 686

Query: 522 VEMHSRMF 529
             +  RMF
Sbjct: 687 TSLIDRMF 694



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 146/333 (43%), Gaps = 37/333 (11%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K F P++  Y+ ++    +  +V     +   M+        PD  TYT ++ +  K
Sbjct: 448 MMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMV---GVTPDVYTYTILIDSFCK 504

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +++A+ +  EM  +G     +TY  L+  Y +  Q+ +A ++   M D A   P+ V
Sbjct: 505 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD-AGCRPNDV 563

Query: 324 SYNILIDGF----------------ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +Y  L+DG                 I   DSA +  +F       +AP  ++Y  L+   
Sbjct: 564 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 623

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
             + +   A+++ D ML     + + + ++ L++G+C+ G ++ A+ +  +M + G+ P+
Sbjct: 624 CKAHKVDHAHELLDAMLSSG-CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 682

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487
           V TY SL   I    K G   L  K + +              L     P+     A+ D
Sbjct: 683 VHTYTSL---IDRMFKDGRLDLAMKVLSQM-------------LKDSCTPNVVTYTAMID 726

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              R     KAL++++ MEE G  PN   Y  +
Sbjct: 727 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 759



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 121/309 (39%), Gaps = 20/309 (6%)

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
            R+   L++     G  ++ +  LG   R +D    P  VTY  +V  L  AG +D   +
Sbjct: 174 GRLLNVLVRRCCRGGMWNEALEELG---RLKDFGYRPSKVTYNALVQVLSSAGQVDLGFR 230

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           V  EM+  G   +R T        C++ +   A +++    +D K+  D V    +I G 
Sbjct: 231 VQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIER--EDFKL--DTVLCTHMISGL 286

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
           +       A++F + MR     P  ++Y TL+  F    Q     ++ + M+ +     +
Sbjct: 287 MEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG-CNPN 345

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK-PGEALLLW 451
              +N LV  YC       A +++ RM   G  P    Y      I    K P   LL  
Sbjct: 346 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 405

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
            E     ++  E + A+  L      ++  +   A        F KA +++  M   G  
Sbjct: 406 AE-----KIYGEMLAANCVL------NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV 454

Query: 512 PNKTKYKKI 520
           P+ + Y K+
Sbjct: 455 PDTSTYSKV 463



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 17/193 (8%)

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           F    R  G + T   Y  L  A     + + A ++  E+  + R +V     N+LV   
Sbjct: 126 FLWAERQVGYSHTGACYDALADALGFDGRARDAERLLREIGEEDR-EVLGRLLNVLVRRC 184

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--C--- 458
           CR G+  EA   + R+K+ G+ P+  TY +L   +S A +      + KE+ E   C   
Sbjct: 185 CRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDR 244

Query: 459 --------EVKKEGVNADS-DL--PPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
                    + KEG  AD+ D+      K D  L   +    + A++F +A+  +  M  
Sbjct: 245 FTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRC 304

Query: 508 HGIPPNKTKYKKI 520
           +   PN   Y+ +
Sbjct: 305 NSCIPNVVTYRTL 317



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           V    +  D  + S  +P+   Y+A+++     GK     ++F QM + G  P V TY  
Sbjct: 629 VDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 688

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           +I    +  R  L + VL ++L+   T  + T+ +++      G+ E A  ++  M E
Sbjct: 689 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEE 746


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 206/466 (44%), Gaps = 61/466 (13%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
           +G+ PH+ A + +++ LA           +L D V K  +K     +V++       YN 
Sbjct: 165 NGFRPHLHACTVLLNSLAKD---------RLTDTVWKIYKKMVKLGVVAN----IHVYNV 211

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +L+AC   G  +K  ++  +M      PD+ TYN +I L  +    +  + V +R+   G
Sbjct: 212 LLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAG 271

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-RDVCKIIRELDLED-------YSS 175
           I+  + T+ SL+  +                REGR R+  ++ R  D++D       Y+S
Sbjct: 272 ISPDIFTYNSLIYGFC---------------REGRMREAVQLFR--DIKDVTPNHVTYTS 314

Query: 176 ENEG----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
             +G    +D D+    ++++       SE  L P     NS I   L +G    GR+ D
Sbjct: 315 LIDGYCRVNDLDEALRLKEVM-------SEKGLYPTVITYNS-ILRKLCEG----GRLRD 362

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
              +L  M  ++     PD+VT  T+++A  K G M  A +V  +M   G+  ++ TY  
Sbjct: 363 ANILLNEMSERK---IEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKA 419

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G+C+  +IDKAKELL  M  DA   P   +Y+ L+D +    +    +   +E+  R
Sbjct: 420 LIHGFCKAKEIDKAKELLFGMM-DAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRR 478

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+      Y  L++ F    +   A +V   +++D  +  D V +  L  GY ++G V  
Sbjct: 479 GLCVDVSVYRALIRRFCKIEKIDCAQRVLG-LMKDKGIFGDSVVYTSLAYGYWKVGKVNV 537

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              I++ M +      +  Y S     S A       L W  + ER
Sbjct: 538 TSDILDEMYKKRLMITLKIYRSF--NASYASDNSILSLFWNHVLER 581


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/519 (23%), Positives = 219/519 (42%), Gaps = 80/519 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++R G L         +S L  S   GP  +  L   +    R      +++  +PD  A
Sbjct: 69  LVRRGDLEEALRLVESMSGLEPSAAPGPCAA--LIKKLCASGRTAEARRVLAACEPDVMA 126

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YNA++      G+     +L   M     +PD  TYN +I+ LC R    + LV VL+ +
Sbjct: 127 YNAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALV-VLDDM 182

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L  G    + T+  L+ A                 R G +   K++ E+           
Sbjct: 183 LRRGCVPDVVTYTILLEA--------------TCKRSGYKQAMKLLDEMR---------- 218

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                      K  AP+   Y  ++ G   EGRV D +  L ++
Sbjct: 219 --------------------------AKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSL 252

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                +   P+ V+Y  V+  L  A   + A +++AEM++ G P N +T+N+L+   C++
Sbjct: 253 ---PSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRR 309

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             ++ A E+L ++       P+ +SYN ++  F        A+ F   M +RG  P  +S
Sbjct: 310 GLVEPAMEVLDQIPKYG-CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVS 368

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y TL+ A     +   A ++  + L+D      ++++N +++G  + G  +EA  ++  M
Sbjct: 369 YNTLLTALCRGGEVDAAVELLHQ-LKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEM 427

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
              G  P++ TY ++++G+    +  EA      I+  C+V+  G+          +P+ 
Sbjct: 428 VTKGLQPDIITYSTISSGLCREDRIEEA------IRAFCKVQDMGI----------RPNT 471

Query: 480 ELLDA-LADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            L +A L  +C R      A+++   M  +G  PN++ Y
Sbjct: 472 VLYNAILLGLCKRRE-THNAIDLFIYMISNGCMPNESTY 509



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 151/353 (42%), Gaps = 58/353 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+S  Y TL++G    GR  + + +L  M R+      PD VTYT ++ A  K     +A
Sbjct: 154 PDSYTYNTLIRGLCGRGRTGNALVVLDDMLRR---GCVPDVVTYTILLEATCKRSGYKQA 210

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++L EM   G   + ITYN+++ G CQ+ ++D A E L+ +      EP+ VSYNI++ 
Sbjct: 211 MKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHG-CEPNTVSYNIVLK 269

Query: 331 GFILIDDSAGALTFFNEMRARG-----------------------------------IAP 355
           G    +    A     EM  +G                                     P
Sbjct: 270 GLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTP 329

Query: 356 TKISYTTLMKAFALSSQPKLANKV-FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
             +SY  ++ AF    Q K+   + F E++       DIV++N L+   CR G V+ A  
Sbjct: 330 NSLSYNPILHAFC--KQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVE 387

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++ ++K+ G  P + +Y ++ +G++ A K  EAL L  E+  +                 
Sbjct: 388 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTK----------------G 431

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           L+PD      ++    R     +A+     +++ GI PN   Y  I + +  R
Sbjct: 432 LQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKR 484



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 145/322 (45%), Gaps = 34/322 (10%)

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
           ++ P  +P     N R     ++G +  G + + +R++ +M   E +A+ P       ++
Sbjct: 50  AASPNAVPHRAVSNDR-----LRGLVRRGDLEEALRLVESMSGLEPSAA-PGPCA--ALI 101

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
             L  +G    AR+VLA         + + YN ++ GYC   Q+D A+ L+ +M     +
Sbjct: 102 KKLCASGRTAEARRVLA-----ACEPDVMAYNAMVAGYCVTGQLDAARRLVADM----PM 152

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           EPD  +YN LI G      +  AL   ++M  RG  P  ++YT L++A    S  K A K
Sbjct: 153 EPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMK 212

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
           + DEM R      DI+ +N++V G C+ G V++A   ++ +  +G  PN  +Y  +  G+
Sbjct: 213 LLDEM-RAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGL 271

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
             A +  +A  L  E+ ++                   P+    + L     R      A
Sbjct: 272 CTAERWEDAEKLMAEMSQK----------------GYPPNVVTFNMLISFLCRRGLVEPA 315

Query: 499 LEIVACMEEHGIPPNKTKYKKI 520
           +E++  + ++G  PN   Y  I
Sbjct: 316 MEVLDQIPKYGCTPNSLSYNPI 337



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 162/385 (42%), Gaps = 36/385 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G +P V  ++ ++   A     G  +++KL D   +   K   PDI++        
Sbjct: 182 MLRRGCVPDVVTYTILLE--ATCKRSGYKQAMKLLD---EMRAKGCAPDIIT-------- 228

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+N     G+    ++    +   G +P+ ++YN+++K    A R      ++  + 
Sbjct: 229 YNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMS 288

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + TF  L++     G +E A  ++  + +       +     L  +  + +  
Sbjct: 289 QKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKK-- 346

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D    F +L+            + +   P+   Y TL+      G V   V +L  ++
Sbjct: 347 -MDRAMAFVELM------------VSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 393

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              D    P  ++Y TV+  L KAG    A ++L EM   G+  + ITY+ +  G C++ 
Sbjct: 394 ---DKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCRE- 449

Query: 301 QIDKAKELLREMA--DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             D+ +E +R      D  I P+ V YN ++ G     ++  A+  F  M + G  P + 
Sbjct: 450 --DRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNES 507

Query: 359 SYTTLMKAFALSSQPKLANKVFDEM 383
           +YT L++        K A ++  E+
Sbjct: 508 TYTILIEGLTYEGLVKEARELLGEL 532



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 68/333 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + GY P+V  ++ ++S L   G   P   V      + ++ K+          P++ +
Sbjct: 287 MSQKGYPPNVVTFNMLISFLCRRGLVEPAMEV------LDQIPKYG-------CTPNSLS 333

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+A     K  + +   + M   G  PD+++YN ++    R       V +L ++ 
Sbjct: 334 YNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 393

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G T  + ++ +++      G  + A  ++  M                          
Sbjct: 394 DKGCTPVLISYNTVIDGLTKAGKTKEALELLNEM-------------------------- 427

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   + K   P+   Y+T+  G   E R+ + +R   A  
Sbjct: 428 ------------------------VTKGLQPDIITYSTISSGLCREDRIEEAIR---AFC 460

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           + +D    P+ V Y  ++  L K      A  +   M   G   N  TY IL++G   + 
Sbjct: 461 KVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEG 520

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNI--LIDG 331
            + +A+ELL E+     +   +++     L+DG
Sbjct: 521 LVKEARELLGELCSRGVVSKGLINKAAIRLLDG 553


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 175/386 (45%), Gaps = 23/386 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCAR--ASRKHLL 112
           PD   +N V++    +G+ +K   +   +  +G  P V TYN +I   C +  A   + +
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +L+ ++E GI+    TF  L+  Y    +   A  + + M++       +     +  
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
             SE  G  ++  ++ E++    +             +PN   +  ++KG+  +G ++D 
Sbjct: 309 LCSE--GKVEEGVKLMEEMEDLGL-------------SPNEITFGCVLKGFCKKGMMADA 353

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
              +  M   E N   PD V Y  ++    + G M+ A  V   M + G+  N  TYN L
Sbjct: 354 NDWIDGM--TERNV-EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCL 410

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+ +      A  LL EM +   IE DVV+YN+LI       +   A+   +EM   G
Sbjct: 411 ITGFSRSGDWRSASGLLDEMKEKG-IEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++Y T+++ F      K A ++   M    R + ++V +N+ ++ +C++G ++EA
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM-EKCRKRANVVTYNVFIKYFCQIGKMDEA 528

Query: 413 KRIIERMKENGFYPNVATYGSLANGI 438
             ++  M +    PN  TY ++  G+
Sbjct: 529 NDLLNEMLDKCLVPNGITYETIKEGM 554



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 60/376 (15%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRML-GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           P++     L+ G +   RV    +    A+RR+      PD  T+ TV+S L + G + +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRR----VSPDIYTFNTVISGLCRIGQLRK 209

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQL---QIDKAKELLREMADDAKIEPDVVSYN 326
           A  V  ++   G+  +  TYN L+ GYC++     +     LL+EM + A I P  V++ 
Sbjct: 210 AGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVE-AGISPTAVTFG 268

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--- 383
           +LI+G+    ++A A+  F EM+ +GIA + ++Y +L+       + +   K+ +EM   
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL 328

Query: 384 -------------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
                                          + +  V+ D+V +N+L++ Y R+G +E+A
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDA 388

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
             + E M + G  PNV TY  L  G S +     A  L  E+KE+      G+ AD    
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK------GIEAD---- 438

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532
             +     L+ AL   C +    RKA++++  M E G+ PN   Y  I ++        K
Sbjct: 439 --VVTYNVLIGAL---CCKGE-VRKAVKLLDEMSEVGLEPNHLTYNTI-IQGFCDKGNIK 491

Query: 533 HASQARQDRRRERKRA 548
            A + R    + RKRA
Sbjct: 492 SAYEIRTRMEKCRKRA 507



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 176/409 (43%), Gaps = 23/409 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P T++ NA+L       +     + F         PD+ T+N +I    R  +      
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 115 VLERILEMGITLCMTTFQSLVAAYV---GFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           V + I   G+   + T+ SL+  Y    G G++   + +++ M E       +   + + 
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
            Y   +  +      VFE++    I             A +   Y +L+ G  +EG+V +
Sbjct: 273 GYCKNS--NTAAAVRVFEEMKQQGI-------------AASVVTYNSLISGLCSEGKVEE 317

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            V++   M   ED    P+ +T+  V+    K G M  A   +  MT   V  + + YNI
Sbjct: 318 GVKL---MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNI 374

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+  Y +  +++ A  +   MA    I P+V +YN LI GF    D   A    +EM+ +
Sbjct: 375 LIDVYRRLGKMEDAMAVKEAMAKKG-ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           GI    ++Y  L+ A     + + A K+ DEM  +  ++ + + +N +++G+C  G ++ 
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           A  I  RM++     NV TY           K  EA  L  E+ ++C V
Sbjct: 493 AYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 160/390 (41%), Gaps = 50/390 (12%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK-----P 56
           LR    P +  ++TV+S L   G                ++RK  D  +  D K     P
Sbjct: 183 LRRRVSPDIYTFNTVISGLCRIG----------------QLRKAGD--VAKDIKAWGLAP 224

Query: 57  DTAAYNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
             A YN++++     G          L  +M E G  P  +T+ V+I    + S     V
Sbjct: 225 SVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            V E + + GI   + T+ SL++     G +E    +++ M +      +I     L+ +
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGF 344

Query: 174 SSENEGDDDDD--------------------DEVFEKLLPNSINPSSEPPLLPKTFAPNS 213
             +    D +D                     +V+ +L       + +  +  K  +PN 
Sbjct: 345 CKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNV 404

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  L+ G+   G       +L  M+ +   A   D VTY  ++ AL   G + +A ++
Sbjct: 405 TTYNCLITGFSRSGDWRSASGLLDEMKEKGIEA---DVVTYNVLIGALCCKGEVRKAVKL 461

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM+ +G+  N +TYN +++G+C +  I  A E +R   +  +   +VV+YN+ I  F 
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYE-IRTRMEKCRKRANVVTYNVFIKYFC 520

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTL 363
            I     A    NEM  + + P  I+Y T+
Sbjct: 521 QIGKMDEANDLLNEMLDKCLVPNGITYETI 550



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 147/351 (41%), Gaps = 38/351 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  +++++      G  G +  V   D+++K +       + +   P    +  +
Sbjct: 221 GLAPSVATYNSLIDGYCKKGGAGNMYHV---DMLLKEM-------VEAGISPTAVTFGVL 270

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +N           +++F++M + G    V+TYN +I       +    V ++E + ++G+
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
           +    TF  ++  +   G +  A   +  M E   +   +I  + ++ Y     G  +D 
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVY--RRLGKMEDA 388

Query: 185 DEVFEKLLPNSINPS------------------SEPPLL----PKTFAPNSRIYTTLMKG 222
             V E +    I+P+                  S   LL     K    +   Y  L+  
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
              +G V   V++L  M    +    P+H+TY T++      G++  A ++   M +   
Sbjct: 449 LCCKGEVRKAVKLLDEM---SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRK 505

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            AN +TYN+ +K +CQ  ++D+A +LL EM D   + P+ ++Y  + +G +
Sbjct: 506 RANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV-PNGITYETIKEGMM 555



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 31/299 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G    V  +++++S L + G     E VKL +       +  D  +     P+   
Sbjct: 290 MKQQGIAASVVTYNSLISGLCSEGK--VEEGVKLME-------EMEDLGL----SPNEIT 336

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  VL      G         D M E   +PDV+ YN++I +  R  +    + V E + 
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA 396

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI+  +TT+  L+  +   GD   A  ++  M+E      K I E D+  Y+    G 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE------KGI-EADVVTYNVL-IGA 448

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                EV + +    ++  SE  L      PN   Y T+++G+ ++G +     +     
Sbjct: 449 LCCKGEVRKAV--KLLDEMSEVGL-----EPNHLTYNTIIQGFCDKGNIKSAYEI---RT 498

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R E      + VTY   +    + G MD A  +L EM    +  N ITY  + +G  ++
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEK 557



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 23/201 (11%)

Query: 38  VVKRVRKFSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91
           V +R+ K  D   V ++       P+   YN ++   +  G  +    L D+M E G + 
Sbjct: 378 VYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEA 437

Query: 92  DVLTYNVMI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           DV+TYNV+I  LC +   +   V +L+ + E+G+     T+ +++  +   G+++ A  I
Sbjct: 438 DVVTYNVLIGALCCKGEVRKA-VKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
              M + R+    +   + ++ +    + D+ +D       L N         +L K   
Sbjct: 497 RTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAND-------LLNE--------MLDKCLV 541

Query: 211 PNSRIYTTLMKGYMNEGRVSD 231
           PN   Y T+ +G M +G   D
Sbjct: 542 PNGITYETIKEGMMEKGYTPD 562


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 194/457 (42%), Gaps = 80/457 (17%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
           P T   N V+     +G  +    LFD+M   G +P+ ++Y VM+   C   +       
Sbjct: 165 PSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGN------- 217

Query: 115 VLER------ILEMGITLCMTTFQSLVAAYV--GFGDLEIAETIVQAMREGRRDVCKIIR 166
           VLE       ++E G  +   T   +V  +   GF        + +A+   RR  C++  
Sbjct: 218 VLESDRWLGGMIERGFVVDNATLSLIVREFCEKGF--------VTRALWYFRR-FCEMGL 268

Query: 167 ELDLEDYSSENEG--DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
             +L +++   EG        + FE L            ++ + + PN   +T L+ G  
Sbjct: 269 RPNLINFTCMIEGLCKRGSVKQAFEML----------EEMVGRGWKPNVYTHTALIDGLC 318

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
            +G      R+   + R E++   P+ +TYT ++S   +   M+RA  +L+ M   G+  
Sbjct: 319 KKGWTEKAFRLFLKLVRSENHK--PNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAP 376

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF------------ 332
           N  TY  L+ G+C+    ++A EL+  M ++    P+V +YN ++DG             
Sbjct: 377 NTNTYTTLIDGHCKAGNFERAYELMNVMNEEG-FSPNVCTYNAIVDGLCKKGRVQEAYKV 435

Query: 333 -----------------ILIDDSAG------ALTFFNEMRARGIAPTKISYTTLMKAFAL 369
                            ILI +         AL  FN+M   GI P   SYTTL+  F  
Sbjct: 436 LKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCR 495

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             + K +   F+E +R   V  +    +M+  GYCR G +  A +   RM ++G   +  
Sbjct: 496 EKRMKESEMFFEEAVRFGLVPTNKTYTSMIC-GYCREGNLRLALKFFHRMSDHGCASDSI 554

Query: 430 TYGSLANGISLARKPGEALLLWKEIKER----CEVKK 462
           TYG+L +G+    K  EA  L+  + E+    CEV +
Sbjct: 555 TYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTR 591



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 169/380 (44%), Gaps = 21/380 (5%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D A  + ++      G   + L  F +  E G +P+++ +  MI+ LC R S K     +
Sbjct: 236 DNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFE-M 294

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           LE ++  G    + T  +L+      G  E      +A R   + V     + ++  Y++
Sbjct: 295 LEEMVGRGWKPNVYTHTALIDGLCKKGWTE------KAFRLFLKLVRSENHKPNVLTYTA 348

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D+     ++L + +          +  APN+  YTTL+ G+   G       +
Sbjct: 349 MISGYCRDEKMNRAEMLLSRMKE--------QGLAPNTNTYTTLIDGHCKAGNFERAYEL 400

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M   E+  S P+  TY  +V  L K G +  A +VL    R G+ A+++TY IL+  
Sbjct: 401 MNVM--NEEGFS-PNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISE 457

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+Q +I +A  L  +M     I+PD+ SY  LI  F        +  FF E    G+ P
Sbjct: 458 HCKQAEIKQALVLFNKMVKSG-IQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVP 516

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           T  +YT+++  +      +LA K F  M  D     D + +  L+ G C+   ++EA+ +
Sbjct: 517 TNKTYTSMICGYCREGNLRLALKFFHRM-SDHGCASDSITYGALISGLCKQSKLDEARCL 575

Query: 416 IERMKENGFYPNVATYGSLA 435
            + M E G  P   T  +LA
Sbjct: 576 YDAMIEKGLTPCEVTRVTLA 595



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 133/315 (42%), Gaps = 22/315 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K F     +   ++K +   GRV + + M+  M  Q      P   T   VV  + + G 
Sbjct: 126 KNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQ---GLAPSTKTLNWVVKIVTEMGL 182

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           ++ A  +  EM   GV  N ++Y +++ GYC+   + ++   L  M +   +  D  + +
Sbjct: 183 VEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFV-VDNATLS 241

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           +++  F        AL +F      G+ P  I++T +++        K A ++ +EM+  
Sbjct: 242 LIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMV-G 300

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM-KENGFYPNVATYGSLANGISLARKPG 445
              K ++     L++G C+ G  E+A R+  ++ +     PNV TY ++ +G     K  
Sbjct: 301 RGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMN 360

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
            A +L   +KE+                 L P+      L D   +A  F +A E++  M
Sbjct: 361 RAEMLLSRMKEQ----------------GLAPNTNTYTTLIDGHCKAGNFERAYELMNVM 404

Query: 506 EEHGIPPNKTKYKKI 520
            E G  PN   Y  I
Sbjct: 405 NEEGFSPNVCTYNAI 419



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 164/398 (41%), Gaps = 36/398 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G+ P+V   + ++  L   G      + K F + +K VR         + KP+   
Sbjct: 298 MVGRGWKPNVYTHTALIDGLCKKG-----WTEKAFRLFLKLVRS-------ENHKPNVLT 345

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y A+++      K  +   L  +M E G  P+  TY  +I    +A        ++  + 
Sbjct: 346 YTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMN 405

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G +  + T+ ++V      G ++ A  ++++      D  K+   + + ++  + E  
Sbjct: 406 EEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAE-- 463

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 +F K++ + I P                 YTTL+  +  E R+ ++        
Sbjct: 464 IKQALVLFNKMVKSGIQPDIHS-------------YTTLIAVFCREKRMKESEMFFEEAV 510

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           R       P + TYT+++    + G++  A +    M+  G  ++ ITY  L+ G C+Q 
Sbjct: 511 RF---GLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQS 567

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D+A+ L   M +   + P  V+   L   +  IDD   A+     +  +    T    
Sbjct: 568 KLDEARCLYDAMIEKG-LTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRT---V 623

Query: 361 TTLMKAFALSSQPKLANKVFDEML-RDPRV-KVDIVAW 396
            TL++      +  +A   F ++L +DP V +V I A+
Sbjct: 624 NTLVRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAF 661


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 114/513 (22%), Positives = 222/513 (43%), Gaps = 77/513 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M ++G++ +  +++ ++  L  SG  G  E+++++  +V               KP    
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCG--EALEVYRRMVSE-----------GLKPSLKT 229

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+A++ A       +  + L  +M + G +P+V T+ + I++  RA +      +  R+ 
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMD 289

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + T+  L+ A    G LE A+ +   M+       ++I    L+ ++  + GD
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN--DFGD 347

Query: 181 DDDDDEVFEKL-----LPNSINPSSEPPLLPKT------FA-----------PNSRIYTT 218
            D   E + ++     +P+ +  +    +L K       FA           PN   Y T
Sbjct: 348 LDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNT 407

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV----- 273
           L+ G +  GR+ D +++L  M   E     P   TY T +    K+G   +A +      
Sbjct: 408 LICGLLRAGRIEDALKLLDTM---ESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMK 464

Query: 274 -----------------LAEMTRI-------------GVPANRITYNILLKGYCQQLQID 303
                            LAEM R+             G+  + +TYN+++K Y +  Q+D
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A  LL EM  +   EPDV+  N LID          A   F+ M+   ++PT ++Y TL
Sbjct: 525 EAVNLLSEMIRNG-CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTL 583

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +       + + A ++F+ M+   +   + +++N L++ +C+   VE A ++  +M    
Sbjct: 584 LSGLGKEGRVQKAIELFESMIX-KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             P+V TY ++  G+    K   A   + ++K+
Sbjct: 643 CKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK 675



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 2/206 (0%)

Query: 249  PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
            P   TY  ++  L K G ++ A ++  EM+  G   N   +NIL+ GY +    + A +L
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 309  LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             + M ++  I PD+ SY IL+D   L      AL +FNE+++ G+ P  I+Y  ++    
Sbjct: 951  FKRMVNEG-IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 369  LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             S + + A  +++EM R+  +  D+  +N L+      G+VE+AKR+ E ++  G  P+V
Sbjct: 1010 KSQRMEEALALYNEM-RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDV 1068

Query: 429  ATYGSLANGISLARKPGEALLLWKEI 454
             TY +L  G SL+  P  A  ++K +
Sbjct: 1069 FTYNALIRGYSLSENPEHAYTVYKNM 1094



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 185/424 (43%), Gaps = 33/424 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPD   Y  +L+   + G    F + + QM   G  PDV+T+ +++ +  +A        
Sbjct: 329 KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFA 388

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDY 173
             + + + GI   + T+ +L+   +  G +E A  ++  M   G +        +   DY
Sbjct: 389 TFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTY--ITFIDY 446

Query: 174 SSENEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT-----------------FAP 211
             ++ G+     E FEK+     +PN +  ++    L +                   AP
Sbjct: 447 FGKS-GETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAP 505

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +S  Y  +MK Y   G+V + V +L  M R   N   PD +   +++ +L KAG +D A 
Sbjct: 506 DSVTYNMMMKCYSKVGQVDEAVNLLSEMIR---NGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           Q+   M  + +    +TYN LL G  ++ ++ KA EL   M    K  P+ +S+N L+D 
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMI-XKKCSPNTISFNTLLDC 621

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F   D+   AL  F++M      P  ++Y T++      ++   A   F ++ +   +  
Sbjct: 622 FCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS--MHP 679

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRII-ERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           D V    L+ G  + G + +A  I  + M +  F  N + +  L  G  +  +  +A++ 
Sbjct: 680 DHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIF 739

Query: 451 WKEI 454
            +E+
Sbjct: 740 AEEL 743



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 130/609 (21%), Positives = 235/609 (38%), Gaps = 129/609 (21%)

Query: 5    GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
            G  P    + T +     SG+ G  ++V+ F+       K     IV    P+  A NA 
Sbjct: 432  GVQPTAYTYITFIDYFGKSGETG--KAVETFE-------KMKAKGIV----PNIVACNAS 478

Query: 65   LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
            L + A +G+ ++   +F+ + E G  PD +TYN+M+K  ++  +    V +L  ++  G 
Sbjct: 479  LYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC 538

Query: 125  TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
               +    SL+ +    G ++ A  +   M++ +     +     L     E  G     
Sbjct: 539  EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKE--GRVQKA 596

Query: 185  DEVFEKLL-----PNSINPSS---------EPPLLPKTFA--------PNSRIYTTLMKG 222
             E+FE ++     PN+I+ ++         E  L  K F+        P+   Y T++ G
Sbjct: 597  IELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYG 656

Query: 223  YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE-MTRIG 281
             + E +V+        +++    + HPDHVT  T++  LVK G +  A  +  + M ++ 
Sbjct: 657  LIKENKVNHAFWFFHQLKK----SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR 712

Query: 282  VPANRITYNILLKGYCQQLQIDKAKELLREMADDA------------------------- 316
               NR  +  L+ G   + ++DKA     E+  +                          
Sbjct: 713  FRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAY 772

Query: 317  ----------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
                       I P + SYN LI   + +  +  A   F +M+  G AP   ++  L+  
Sbjct: 773  QIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAV 832

Query: 367  FALSSQPKLANKVFDEMLRDPRVKVDIVAWNM---------------------------- 398
               S +     +++ EM+   R K D + +N+                            
Sbjct: 833  HGKSGKITELFELYKEMI-SRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRP 891

Query: 399  -------LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
                   L++G  ++G +EEA R+ E M + G  PN A +  L NG     K G+     
Sbjct: 892  TPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYG---KIGDT---- 944

Query: 452  KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
               +  C++ K  VN        ++PD +    L D    A    +AL     ++  G+ 
Sbjct: 945  ---ETACQLFKRMVNEG------IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLD 995

Query: 512  PNKTKYKKI 520
            P+   Y +I
Sbjct: 996  PDFIAYNRI 1004



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 5/233 (2%)

Query: 204  LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
            L+   F P  R Y  L+ G    GR+ + +R+   M    D    P+   +  +++   K
Sbjct: 884  LVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM---SDYGCKPNCAIFNILINGYGK 940

Query: 264  AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
             G  + A Q+   M   G+  +  +Y IL+   C   ++D+A     E+     ++PD +
Sbjct: 941  IGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG-LDPDFI 999

Query: 324  SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            +YN +I+G         AL  +NEMR RGI P   +Y +LM    L+   + A ++++E 
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE- 1058

Query: 384  LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            L+   ++ D+  +N L+ GY      E A  + + M  +G  PN+ TY  L N
Sbjct: 1059 LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 210  APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            AP++  +  L+  +   G++++   +   M  +      PD +TY  V+S+L K+ ++D+
Sbjct: 820  APDAFTFNMLLAVHGKSGKITELFELYKEMISRR---CKPDAITYNIVISSLAKSNNLDK 876

Query: 270  ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            A     ++          TY  L+ G  +  ++++A  L  EM+D    +P+   +NILI
Sbjct: 877  ALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG-CKPNCAIFNILI 935

Query: 330  DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
            +G+  I D+  A   F  M   GI P   SYT L+    L+ +   A   F+E L+   +
Sbjct: 936  NGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE-LKSTGL 994

Query: 390  KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
              D +A+N ++ G  +   +EEA  +   M+  G  P++ TY SL   + LA    +A  
Sbjct: 995  DPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKR 1054

Query: 450  LWKEIK 455
            +++E++
Sbjct: 1055 MYEELQ 1060



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 144/314 (45%), Gaps = 21/314 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +   P+ + Y+ LM      G+  D+  ++  ++  ED    P+  T+T  +  L +
Sbjct: 218 MVSEGLKPSLKTYSALMVAL---GKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGR 274

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +D A ++   M   G   + +TY +L+   C   Q++ AKEL  +M  +   +PD V
Sbjct: 275 AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGH-KPDQV 333

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            Y  L+D F    D      F+++M A G  P  +++T L+     +     A   FD M
Sbjct: 334 IYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVM 393

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R   +  ++  +N L+ G  R G +E+A ++++ M+  G  P   TY +  +    + +
Sbjct: 394 -RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGE 452

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
            G+A+  ++++K +             + P +      L +LA++       R+A  +  
Sbjct: 453 TGKAVETFEKMKAK------------GIVPNIVACNASLYSLAEM----GRLREAKTMFN 496

Query: 504 CMEEHGIPPNKTKY 517
            + E+G+ P+   Y
Sbjct: 497 GLRENGLAPDSVTY 510



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 35/316 (11%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            PD   +N +L      GK  +  +L+ +M     KPD +TYN++I   A+++        
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNN------- 873

Query: 116  LERILEMGITLCMT-------TFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRE 167
            L++ L+    L  +       T+  L+      G LE A  + + M + G +  C I   
Sbjct: 874  LDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNI 933

Query: 168  LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
            L +  Y     GD +   ++F++++   I              P+ + YT L+      G
Sbjct: 934  L-INGYGK--IGDTETACQLFKRMVNEGIR-------------PDLKSYTILVDCLCLAG 977

Query: 228  RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            RV + +     ++        PD + Y  +++ L K+  M+ A  +  EM   G+  +  
Sbjct: 978  RVDEALYYFNELK---STGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLY 1034

Query: 288  TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            TYN L+        +++AK +  E+   A +EPDV +YN LI G+ L ++   A T +  
Sbjct: 1035 TYNSLMLNLGLAGMVEQAKRMYEEL-QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093

Query: 348  MRARGIAPTKISYTTL 363
            M   G  P   +Y  L
Sbjct: 1094 MMVDGCNPNIGTYAQL 1109



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 20/308 (6%)

Query: 215 IYTTLMKGYMNEG-RVSDTVR-MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           ++TT    +M E  RV D V  M       +      D  TY T+  AL   G + +   
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTT 178

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           VL +M + G   N  +YN L+    Q     +A E+ R M  +  ++P + +Y+ L+   
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEG-LKPSLKTYSALMVAL 237

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
               DS   +    EM   G+ P   ++T  ++    + +   A ++F  M  D     D
Sbjct: 238 GKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPD 296

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +V + +L++  C  G +E AK +  +MK NG  P+   Y +L +  +           W 
Sbjct: 297 LVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           +++           AD  +     PD      L D+  +A  F +A      M + GI P
Sbjct: 357 QME-----------ADGYM-----PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILP 400

Query: 513 NKTKYKKI 520
           N   Y  +
Sbjct: 401 NLHTYNTL 408


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 18/285 (6%)

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           LG  R+   +   PD  T+ +++SA  +AG ++ AR +  EM  +G+  +  TYN  +  
Sbjct: 289 LGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDA 348

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   I+ A ++L +M +   ++P+VV+Y+ LIDG+  ++    AL  + +M++ GI  
Sbjct: 349 ICKCGNIELAMQVLLDM-EAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQL 407

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            ++ Y T++  +  + +      V DEM  D  ++ D V +N L+ GY + G ++    +
Sbjct: 408 DRVCYNTVLAIYVKAGKYGEIAIVCDEM-EDSGIEKDTVTYNSLINGYGKQGRLDIVSFL 466

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           ++ M+  G  P+V TY +L +  S A   G+A  ++ + KE                  L
Sbjct: 467 VQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKE----------------SGL 510

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           KPD  L  +  D   +      AL ++  M E GI PN   Y  I
Sbjct: 511 KPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTI 555



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 118/511 (23%), Positives = 213/511 (41%), Gaps = 84/511 (16%)

Query: 26  DGPVESVKLFDVVVKRVRKFSDPDI--------VSDSKPDTA-AYNAVLNACANLGKPKK 76
           +G V+  KL    +  + K S PD+        ++    +T  A +A+++A A  G   +
Sbjct: 192 NGSVDKGKLLTAAIGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNE 251

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM-GITLC--MTTFQS 133
            + + + M   G +P  +TYN +I  C +      L F L    +M    LC    TF S
Sbjct: 252 AMGVLESMKGAGLRPTTVTYNAVIDACGKGGVD--LRFTLGYFRQMLRDRLCPDRKTFNS 309

Query: 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLP 193
           L++A    G LE                                     D   +F++++ 
Sbjct: 310 LLSACSRAGHLE-------------------------------------DARALFDEMIH 332

Query: 194 NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
             I               +   Y T +      G +   +++L  M   E     P+ VT
Sbjct: 333 LGI-------------GRDIYTYNTFIDAICKCGNIELAMQVLLDM---EAKNVKPNVVT 376

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           Y+T++    K    D A ++  +M  +G+  +R+ YN +L  Y +  +  +   +  EM 
Sbjct: 377 YSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEM- 435

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFN----EMRARGIAPTKISYTTLMKAFAL 369
           +D+ IE D V+YN LI+G+       G L   +    +MR RG+AP+ ++Y+TL+  ++ 
Sbjct: 436 EDSGIEKDTVTYNSLINGY----GKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSK 491

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +     A  V+ +  ++  +K D+V ++  ++   + GLVE A  ++  M E G  PNV 
Sbjct: 492 AGMHGDAFNVYLD-FKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVV 550

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
           TY ++ +        G++ +L +E  E  E+   GV  +  +     P      A+    
Sbjct: 551 TYNTIIDAF------GKSKVLSEEDPEAGEMGIVGV-YNGQIIRAANPVTRGRSAIDVRM 603

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            R+      LE+   M + G+ PN   +  I
Sbjct: 604 RRSQELYFILELFQKMVQQGVRPNVVTFSAI 634



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 129/320 (40%), Gaps = 61/320 (19%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP+   Y+ +++  + L K  + L+L+++M   G + D + YN ++ +  +A +   +  
Sbjct: 371 KPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAI 430

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V + + + GI     T+ SL+  Y   G L+I   +VQ MR  RR V             
Sbjct: 431 VCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMR--RRGV------------- 475

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                              AP+   Y+TL+  Y   G   D   
Sbjct: 476 -----------------------------------APSVLTYSTLIDIYSKAGMHGDAFN 500

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +    +   ++   PD V +++ +  L K G ++ A  +L +MT +G+  N +TYN ++ 
Sbjct: 501 VYLDFK---ESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIID 557

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVV-SYNILIDGFILID-------DSAGALTFFN 346
            + +   + +      EM         ++ + N +  G   ID       +    L  F 
Sbjct: 558 AFGKSKVLSEEDPEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQ 617

Query: 347 EMRARGIAPTKISYTTLMKA 366
           +M  +G+ P  ++++ ++ A
Sbjct: 618 KMVQQGVRPNVVTFSAILNA 637



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 174/432 (40%), Gaps = 83/432 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR    P  K +++++S  + +G              ++  R   D  I      D   
Sbjct: 295 MLRDRLCPDRKTFNSLLSACSRAGH-------------LEDARALFDEMIHLGIGRDIYT 341

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN  ++A    G  +  +Q+   M     KP+V+TY+ +I   ++  +    + + E++ 
Sbjct: 342 YNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMK 401

Query: 121 EMGITLCMTTFQSLVAAYV---GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
            +GI L    + +++A YV    +G++ I              VC               
Sbjct: 402 SLGIQLDRVCYNTVLAIYVKAGKYGEIAI--------------VC--------------- 432

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
              D+ +D   EK                     ++  Y +L+ GY  +GR+     ++ 
Sbjct: 433 ---DEMEDSGIEK---------------------DTVTYNSLINGYGKQGRLDIVSFLVQ 468

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            MRR+      P  +TY+T++    KAG    A  V  +    G+  + + ++  +    
Sbjct: 469 DMRRR---GVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLA 525

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF----ILIDD-----SAGALTFFNEM 348
           +   ++ A  LL +M  +  I+P+VV+YN +ID F    +L ++       G +  +N  
Sbjct: 526 KNGLVEWALSLLNDMT-EMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVYNGQ 584

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             R   P     + +      S +     ++F +M++   V+ ++V ++ ++    R   
Sbjct: 585 IIRAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQG-VRPNVVTFSAILNACSRCNN 643

Query: 409 VEEAKRIIERMK 420
            E+A  ++E+++
Sbjct: 644 FEDAALLLEQLR 655


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 204/467 (43%), Gaps = 71/467 (15%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++    +G  +K L +FD++ E G  P V++Y  +I L  +  +    + V + + 
Sbjct: 411 YHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMME 470

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   M T+  L+  +V                              L+D++      
Sbjct: 471 VAGIKHNMKTYSMLINGFV-----------------------------RLKDWA------ 495

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   VFE ++ + + P             +  +Y  +++ +   G +   +R +  M+
Sbjct: 496 --NAFAVFEDVVKDGLKP-------------DVVLYNNIIRAFCGMGNMDRAIRTVKEMQ 540

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      P   T+  ++    ++G M RA ++   M   G      T+N L+ G  ++ 
Sbjct: 541 KERH---RPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKC 597

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q++KA E+L EM+  A I P+  +Y  ++ G+  + D+  A  +F +++  G+     +Y
Sbjct: 598 QMEKAVEILDEMSL-AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTY 656

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S + + A  V  EM    ++  +   +N+L++G+ R G V EA  ++++MK
Sbjct: 657 EALLKACCKSGRMQSALAVTREM-SSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMK 715

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  P++ TY S  N      K G+     K I+E   ++  GV          KP+ +
Sbjct: 716 QEGVQPDIHTYTSFINACC---KAGDMQRATKTIQE---MEVVGV----------KPNIK 759

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
               L     RA+   KAL+    M+  G+ P+K  Y  +   + SR
Sbjct: 760 TYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSR 806



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 172/399 (43%), Gaps = 49/399 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   +Y  ++N    +GK  K L++   M   G K ++ TY+++I    R         V
Sbjct: 441 PSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAV 500

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDL 170
            E +++ G+   +  + +++ A+ G G+++ A   V+ M++ R     R    II     
Sbjct: 501 FEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPII----- 555

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEP------PLLPKT---------------- 208
             +     GD     E+F+ +  +   P+          L+ K                 
Sbjct: 556 --HGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAG 613

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +PN   YTT+M GY + G   DT +      + +      D  TY  ++ A  K+G M 
Sbjct: 614 ISPNEHTYTTIMHGYASLG---DTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQ 670

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V  EM+   +P N   YNIL+ G+ ++  + +A EL+++M  +  ++PD+ +Y   
Sbjct: 671 SALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEG-VQPDIHTYTSF 729

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+      D   A     EM   G+ P   +YTTL+  +A +S P+ A K F EM +   
Sbjct: 730 INACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEM-KSAG 788

Query: 389 VKVDIVAWNMLV----------EGYCRMGLVEEAKRIIE 417
           +K D   ++ L+          E Y   G+V   + +IE
Sbjct: 789 LKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICREMIE 827



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 146/345 (42%), Gaps = 56/345 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P S +YT+L+  Y   GR  D    L  +R+ ++       VTY+ +V    K    + A
Sbjct: 301 PTSHVYTSLIHAYA-VGR--DMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAA 357

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                E        N I Y  ++  +CQ   + +A+ L+REM ++  I+  +  Y+ ++D
Sbjct: 358 DHWFKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEG-IDAPIDIYHTMMD 416

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLM----------KAFALSSQPKLAN--- 377
           G+ +I +    L  F+ ++  G  P+ ISY  L+          KA  +S   ++A    
Sbjct: 417 GYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKH 476

Query: 378 ----------------------KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
                                  VF+++++D  +K D+V +N ++  +C MG ++ A R 
Sbjct: 477 NMKTYSMLINGFVRLKDWANAFAVFEDVVKDG-LKPDVVLYNNIIRAFCGMGNMDRAIRT 535

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           ++ M++    P   T+  + +G + +     AL ++  ++             S   P +
Sbjct: 536 VKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRW------------SGCIPTV 583

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                L+  L + C       KA+EI+  M   GI PN+  Y  I
Sbjct: 584 HTFNALILGLVEKCQ----MEKAVEILDEMSLAGISPNEHTYTTI 624



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 31/343 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIV--------- 51
           ML +G++  +K W+   +       DG    V L++ +++      + D           
Sbjct: 483 MLINGFV-RLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQK 541

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
              +P T  +  +++  A  G  ++ L++FD M   G  P V T+N +I       +   
Sbjct: 542 ERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEK 601

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDL 170
            V +L+ +   GI+    T+ +++  Y   GD   A E   +   EG          L+L
Sbjct: 602 AVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEG----------LEL 651

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           + Y+ E            +  L  +   SS+   +P+    N+ +Y  L+ G+   G V 
Sbjct: 652 DVYTYEALLKACCKSGRMQSALAVTREMSSQK--IPR----NTFVYNILIDGWARRGDVW 705

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +   ++  M+++      PD  TYT+ ++A  KAG M RA + + EM  +GV  N  TY 
Sbjct: 706 EAAELMQQMKQE---GVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYT 762

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            L+ G+ +    +KA +  +EM   A ++PD   Y+ L+   +
Sbjct: 763 TLIHGWARASLPEKALKCFQEM-KSAGLKPDKAVYHCLMTSLL 804



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 32/224 (14%)

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +P    + +++  +    D   A   F  MRARGI PT   YT+L+ A+A+    + A  
Sbjct: 265 KPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 324

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
              +M ++  +++ +V +++LV G+ ++   E A    +  KE     N   YG++    
Sbjct: 325 CVRKM-KEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAH 383

Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL----------------------- 475
             A    +A  L +E++E      EG++A  D+   +                       
Sbjct: 384 CQACNMTQAEALVREMEE------EGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKEC 437

Query: 476 --KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              P       L ++ ++     KALE+   ME  GI  N   Y
Sbjct: 438 GFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTY 481


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 189/410 (46%), Gaps = 23/410 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ VL    N  K +    LF++M   G   DV TY +M+    +A         
Sbjct: 481 PDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVC--KIIRELDLED 172
              + E+G T  + T+ +L+ AY+    +  A  + + M  EG    C   I+    L D
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG----CLPNIVTYSALID 596

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF------APNSRIYTTLMKGYMNE 226
              +  G  +   ++FE++  +   P  +  +  K +       PN  IY  L+ G+   
Sbjct: 597 GHCK-AGQMEKACQIFERMCGSKDVPDVD--MYFKQYDDDNSERPNVVIYGALLDGFCKL 653

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
            RV +  ++L AM  +      P+ + Y  ++  L K G +D A++V AEM+  G PA  
Sbjct: 654 HRVEEARKLLDAMSME---GCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATL 710

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            TY+ L+  Y +  + D A ++L +M +++   P+VV Y  +IDG   +  +  A     
Sbjct: 711 YTYSSLIDRYFKVKRQDLASKVLSKMLENS-CAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 769

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            M  +G  P  ++YT ++  F    + +   ++ + M     V  + V + +L++  C+ 
Sbjct: 770 MMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERM-GSKGVAPNYVTYRVLIDHCCKN 828

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           G ++ A  ++E MK+  +  + A Y  +  G +  ++  E+L L  EI +
Sbjct: 829 GALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFN--KEFIESLGLLDEIGQ 876



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 115/537 (21%), Positives = 215/537 (40%), Gaps = 95/537 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M++ G+ P    ++ ++  +    D     S  L ++  K   +     +V + K + ++
Sbjct: 398 MVKCGHTPGYVVYNILIGSICGDKDS---LSCHLLELAEKAYSEMLATGVVLN-KINVSS 453

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +   L    + GK +K   +  +M   G  PD  TY+ ++     AS+  L   + E + 
Sbjct: 454 FTRCL---CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMK 510

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+   + T+  +V ++   G +E A      MRE                        
Sbjct: 511 RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE------------------------ 546

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                       PN +                   YT L+  Y+   +VS    +   M 
Sbjct: 547 --------VGCTPNVVT------------------YTALIHAYLKAKKVSYANELFETML 580

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT-RIGVP---------------- 283
            +      P+ VTY+ ++    KAG M++A Q+   M     VP                
Sbjct: 581 SE---GCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSER 637

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N + Y  LL G+C+  ++++A++LL  M+ +   EP+ + Y+ LIDG   +     A  
Sbjct: 638 PNVVIYGALLDGFCKLHRVEEARKLLDAMSMEG-CEPNQIVYDALIDGLCKVGKLDEAQE 696

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
              EM   G   T  +Y++L+  +    +  LA+KV  +ML +     ++V +  +++G 
Sbjct: 697 VKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS-CAPNVVIYTEMIDGL 755

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
           C++G  +EA ++++ M+E G  PNV TY ++ +G     K    L    E+ ER  +  +
Sbjct: 756 CKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCL----ELLER--MGSK 809

Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           GV           P+      L D C +      A  ++  M++   P +   Y+K+
Sbjct: 810 GV----------APNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKV 856



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/457 (22%), Positives = 186/457 (40%), Gaps = 65/457 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVV--KRV----RKFSDPDIVSDS 54
           ML  G LP++  +S ++     +G     ++ ++F+ +   K V      F   D  +  
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQ--MEKACQIFERMCGSKDVPDVDMYFKQYDDDNSE 636

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   Y A+L+    L + ++  +L D M   G +P+ + Y+ +I    +  +      
Sbjct: 637 RPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 696

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V   + E G    + T+ SL+  Y                        K+ R+       
Sbjct: 697 VKAEMSEHGFPATLYTYSSLIDRYF-----------------------KVKRQ------- 726

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                  D   +V  K+L NS              APN  IYT ++ G    G+  +  +
Sbjct: 727 -------DLASKVLSKMLENSC-------------APNVVIYTEMIDGLCKVGKTDEAYK 766

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M+  E+    P+ VTYT ++    + G ++   ++L  M   GV  N +TY +L+ 
Sbjct: 767 L---MQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLID 823

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C+   +D A  LL EM            Y  +I+GF    +   +L   +E+     A
Sbjct: 824 HCCKNGALDVAHNLLEEM-KQTHWPTHAAGYRKVIEGF--NKEFIESLGLLDEIGQDDTA 880

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA-WNMLVEGYCRMGLVEEAK 413
           P    Y  L+     + + ++A ++ +E+       VD  + +N L+E  C    V++A 
Sbjct: 881 PFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAF 940

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           R+   M + G  P + T+ SL  G+    K  EALLL
Sbjct: 941 RLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLL 977



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 132/342 (38%), Gaps = 33/342 (9%)

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           DDD++V E+LL    +   E       F         L++ Y   G  S  +  LG   R
Sbjct: 178 DDDEKVPEELLQQIRDDDKE------VFG---EFLNVLVRKYCRSGSFSIALEELG---R 225

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            +D    P   TY  ++ A +KA  +D A  V  EM+   +  +  T        C   +
Sbjct: 226 LKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLC---K 282

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           + K +E L  M  +  + PD V Y  LI G         A+ F N MRA    P  ++Y+
Sbjct: 283 VGKWREALTLMETENFV-PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYS 341

Query: 362 TLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           TL+       Q     +V + M+ +   P  K+    +N LV  YC  G    A +++++
Sbjct: 342 TLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI----FNSLVHAYCTSGDHSYAYKLLKK 397

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M + G  P    Y  L   I   +      LL    K   E+   GV            +
Sbjct: 398 MVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVL----------N 447

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +  + +       A  + KA  ++  M   G  P+ + Y K+
Sbjct: 448 KINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKV 489



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 115/280 (41%), Gaps = 28/280 (10%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD V YT ++S L +A   + A   L  M       N +TY+ LL G   + Q+ + K +
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF- 367
           L  M  +    P    +N L+  +    D + A     +M   G  P  + Y  L+ +  
Sbjct: 360 LNMMMMEG-CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSIC 418

Query: 368 ----ALSSQ-PKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
               +LS    +LA K + EML    V  K+++ ++   +   C  G  E+A  +I  M 
Sbjct: 419 GDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCL---CSAGKYEKAFSVIREMI 475

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             GF P+ +TY  +   +  A K   A LL++E+      K+ G+ AD            
Sbjct: 476 GQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEM------KRGGLVADV----------Y 519

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
               + D   +A    +A +    M E G  PN   Y  +
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 191/427 (44%), Gaps = 41/427 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +YN +++     G   K    + +M +    PD +TYN +I   ++A         
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQ-------A 61

Query: 116 LERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLE 171
           ++R +E+   + M    T+ S++  Y   G  E A  I + M  +G      ++    L 
Sbjct: 62  MDRAMEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEP--DVVTYNSLM 119

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINP------------SSEPPLL----------PKTF 209
           DY  +N G   +  ++F+ ++   + P            +S+  L+              
Sbjct: 120 DYLCKN-GKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM 178

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
             +  ++  L+  Y  + +V + V +   MR+Q      P+ V Y TV+  L K G +D 
Sbjct: 179 QLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQ---GLTPNAVNYRTVIDGLCKLGRLDD 235

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A     +M   G+  N + Y  L+   C   + +KA+EL+ E+ D   I P++V +N ++
Sbjct: 236 AMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQG-INPNIVFFNTIL 294

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
           D          +   F+ +   G+ P  I+Y+TL+  + L+ +   A K+   M+    +
Sbjct: 295 DSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVS-VGL 353

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
           K D V ++ L+ GYC++  +E+A  + + M+ NG  P++ TY  + +G+   R+   A  
Sbjct: 354 KPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKE 413

Query: 450 LWKEIKE 456
           L+  I E
Sbjct: 414 LYARITE 420



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 182/376 (48%), Gaps = 20/376 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN++++   + G+ +K + +F +M   G +PDV+TYN ++    +  +      +
Sbjct: 75  PNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKI 134

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +++ G+   +TT+ +L+  Y   G L     ++  M +    +   +  + +  Y+ 
Sbjct: 135 FDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTK 194

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + + D+     VF K+    +              PN+  Y T++ G    GR+ D   M
Sbjct: 195 QEKVDEVV--LVFSKMRQQGL-------------TPNAVNYRTVIDGLCKLGRLDDA--M 237

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L    +  D    P+ V YT+++ AL      ++A +++ E+   G+  N + +N +L  
Sbjct: 238 LN-FEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDS 296

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C++ ++ ++K+L  ++     + PDV++Y+ LIDG+ L     GA+     M + G+ P
Sbjct: 297 LCKEGRVIESKKLF-DLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKP 355

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y+TL+  +   ++ + A  +F EM     V  DI+ +N+++ G  R      AK +
Sbjct: 356 DSVTYSTLINGYCKINRMEDALALFKEM-ESNGVNPDIITYNIILHGLFRTRRTAAAKEL 414

Query: 416 IERMKENGFYPNVATY 431
             R+ E+G    ++TY
Sbjct: 415 YARITESGTQLELSTY 430



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 162/373 (43%), Gaps = 42/373 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V  +++++  L  +G     E+ K+FD +VKR             KPD   
Sbjct: 103 MCSDGIEPDVVTYNSLMDYLCKNGK--CTEARKIFDSMVKR-----------GLKPDITT 149

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+  A+ G   +   L   M + G + D   +N++I    +  +   +V V  ++ 
Sbjct: 150 YGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMR 209

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREGRRDVCKIIRELDLEDYSS 175
           + G+T     +++++      G L+ A     + I + +         +I  L   D   
Sbjct: 210 QQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWE 269

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           + E       E+  ++L   IN             PN   + T++     EGRV ++ ++
Sbjct: 270 KAE-------ELIFEILDQGIN-------------PNIVFFNTILDSLCKEGRVIESKKL 309

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              +     N   PD +TY+T++     AG MD A ++L  M  +G+  + +TY+ L+ G
Sbjct: 310 FDLLGHIGVN---PDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLING 366

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+  +++ A  L +EM  +  + PD+++YNI++ G      +A A   +  +   G   
Sbjct: 367 YCKINRMEDALALFKEMESNG-VNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQL 425

Query: 356 TKISYTTLMKAFA 368
              +Y  ++  FA
Sbjct: 426 ELSTYNIILMDFA 438



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 136/313 (43%), Gaps = 57/313 (18%)

Query: 243 EDNASHPDHVTYTT-----------------------------------VVSALVKAGSM 267
           +D    PD V+Y T                                   +++AL KA +M
Sbjct: 3   DDGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAM 62

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           DRA +VL  M    V  N  TYN ++ GYC   Q +KA  + R+M  D  IEPDVV+YN 
Sbjct: 63  DRAMEVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDG-IEPDVVTYNS 117

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+D          A   F+ M  RG+ P   +Y TL+  +A        + +   M+++ 
Sbjct: 118 LMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNG 177

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            +++D   +N+L+  Y +   V+E   +  +M++ G  PN   Y ++ +G+    +  +A
Sbjct: 178 -MQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDA 236

Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
           +L ++++             D  L P +     L+ AL   C     + KA E++  + +
Sbjct: 237 MLNFEQM------------IDKGLTPNVVVYTSLIHAL---CTYDK-WEKAEELIFEILD 280

Query: 508 HGIPPNKTKYKKI 520
            GI PN   +  I
Sbjct: 281 QGINPNIVFFNTI 293



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           MADD +  PDVVSYN +IDG     D   A   ++EM  R ++P  ++Y +++ A + + 
Sbjct: 1   MADDGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQ 60

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
               A +V   M     V  +   +N ++ GYC  G  E+A  I  +M  +G  P+V TY
Sbjct: 61  AMDRAMEVLTVM-----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTY 115

Query: 432 GSLANGISLARKPGEALLLWKEIKER 457
            SL + +    K  EA  ++  + +R
Sbjct: 116 NSLMDYLCKNGKCTEARKIFDSMVKR 141


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/456 (22%), Positives = 201/456 (44%), Gaps = 38/456 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP-DTA 59
           M   G++PH   ++ V+      G    +E+VK+              +++S  KP +  
Sbjct: 285 MRDKGWVPHEVIFTRVIGVCMKQGK--MLEAVKV------------KGEMLSCGKPMNVV 330

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
               ++      G     L+LFD+M+E G  P+ +TY V+I+ C +         +  ++
Sbjct: 331 VATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQM 390

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSENE 178
               I+  +    SL+  Y+     E A  +  +A+  G   +  +     L  +  + E
Sbjct: 391 KNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACG---IANVFTYNSLLSWLCK-E 446

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G   +   ++EK++   + PS                Y  ++ G+  +G   D     G 
Sbjct: 447 GKMSEACSIWEKMVRKGVRPSVVS-------------YNNMILGHCQQG---DMDSANGV 490

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
                +    P+ +TY+ ++    K G  + A  +   M    +  +  T NI++ G C+
Sbjct: 491 FVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCK 550

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             +  ++++ L+++  +  I P  ++YN +IDGF+       AL  + EM   G++P   
Sbjct: 551 AGRTSESQDRLKKLVQEGFI-PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVF 609

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +YT L+  F  S+   LA KV DEM ++  +++D+  +  L++G+CR G +  A +++  
Sbjct: 610 TYTNLINGFCKSNNMDLALKVMDEM-KNKGIELDVTVYCALIDGFCRKGDMVNASQLLSE 668

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           ++E G  PN   Y S+ +G    +    AL L K +
Sbjct: 669 LQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRM 704



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 123/516 (23%), Positives = 212/516 (41%), Gaps = 82/516 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           ML  G   +V   +T++      GD D  +E   LFD       K ++  I     P+  
Sbjct: 320 MLSCGKPMNVVVATTLMKGYCKQGDLDSALE---LFD-------KMNENGIC----PNNV 365

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
            Y  ++  C   G   K  ++++QM      P V   N +I+   +A        + +  
Sbjct: 366 TYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEA 425

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENE 178
           +  GI   + T+ SL++     G +  A +I + M R+G R        + L       +
Sbjct: 426 VACGIAN-VFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMIL---GHCQQ 481

Query: 179 GDDDDDDEVFEKLLPNSINPS--SEPPLLPKTF--------------------APNSRIY 216
           GD D  + VF ++L   + P+  +   L+   F                    AP+    
Sbjct: 482 GDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTC 541

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
             ++ G    GR S++   L  + ++      P  +TY  ++   VK GS++ A  V  E
Sbjct: 542 NIIINGLCKAGRTSESQDRLKKLVQE---GFIPTCMTYNCIIDGFVKEGSVNSALAVYTE 598

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M +IGV  N  TY  L+ G+C+   +D A +++ EM +   IE DV  Y  LIDGF    
Sbjct: 599 MCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKG-IELDVTVYCALIDGFCRKG 657

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAF----------------------------- 367
           D   A    +E++  G++P K+ Y++++  F                             
Sbjct: 658 DMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYT 717

Query: 368 ----ALSSQPKL--ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
                L  + KL  A++++ EML    +  D++ +++L+ G C  G +E A++I+E M  
Sbjct: 718 TLISGLLKEGKLLFASELYAEMLAKG-IMPDLITYSVLIHGLCNKGQLENAQKILEDMDR 776

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
               P V  Y +L  G        EA  L  E+ ++
Sbjct: 777 KCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDK 812



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 181/449 (40%), Gaps = 75/449 (16%)

Query: 28  PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           P E+ KLFD            + V+    +   YN++L+     GK  +   ++++M   
Sbjct: 415 PEEASKLFD------------EAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRK 462

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G +P V++YN MI    +         V   +LE G+   + T+  L+  Y   GD E A
Sbjct: 463 GVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYA 522

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP----P 203
             +   MR                    EN    D    +    L  +   S        
Sbjct: 523 FGLYDRMR-------------------GENIAPSDFTCNIIINGLCKAGRTSESQDRLKK 563

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L+ + F P    Y  ++ G++ EG V+  + +   M +       P+  TYT +++   K
Sbjct: 564 LVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKI---GVSPNVFTYTNLINGFCK 620

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           + +MD A +V+ EM   G+  +   Y  L+ G+C++  +  A +LL E+  +  + P+ V
Sbjct: 621 SNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSEL-QEVGLSPNKV 679

Query: 324 SYNILIDGFILIDDSAGAL-----------------------------------TFFNEM 348
            Y+ +I GF  + +   AL                                     + EM
Sbjct: 680 VYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEM 739

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
            A+GI P  I+Y+ L+       Q + A K+ ++M R       +  +N L+ G+ + G 
Sbjct: 740 LAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPT-VFIYNTLITGHFKEGN 798

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANG 437
           ++EA R+   M + G  P+  TY  L NG
Sbjct: 799 LQEAFRLHNEMLDKGLVPDDTTYDILVNG 827



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 3/207 (1%)

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           D+V  LG +R   D    P  V +T V+   +K G M  A +V  EM   G P N +   
Sbjct: 274 DSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVAT 333

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+KGYC+Q  +D A EL  +M ++  I P+ V+Y ++I+      +   A   +N+M+ 
Sbjct: 334 TLMKGYCKQGDLDSALELFDKMNENG-ICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKN 392

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           + I+PT  +  +L++ +  +  P+ A+K+FDE +       ++  +N L+   C+ G + 
Sbjct: 393 KDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI--ANVFTYNSLLSWLCKEGKMS 450

Query: 411 EAKRIIERMKENGFYPNVATYGSLANG 437
           EA  I E+M   G  P+V +Y ++  G
Sbjct: 451 EACSIWEKMVRKGVRPSVVSYNNMILG 477



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F  +SR++  L+  Y+   R++D V    ++  ++     P        +S LVK   + 
Sbjct: 150 FESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKD---IVPCLTVMNIFLSELVKNNMIR 206

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            AR V  +M   GV  +  T +++++   ++ ++++A+   RE A +  +E D  +Y+I+
Sbjct: 207 EARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFRE-AKNKGVELDARAYSIV 265

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+      DS  AL    EMR +G  P ++ +T ++       +   A KV  EML   +
Sbjct: 266 IEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGK 325

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
             +++V    L++GYC+ G ++ A  + ++M ENG  PN  TY 
Sbjct: 326 -PMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYA 368



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 104/267 (38%), Gaps = 58/267 (21%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YN +++     G     L ++ +M + G  P+V TY  +I    +++   L + V
Sbjct: 571 PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKV 630

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDL--------EIAET-------IVQAMREGRRD 160
           ++ +   GI L +T + +L+  +   GD+        E+ E        +  +M  G R 
Sbjct: 631 MDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRK 690

Query: 161 VC----------KIIRE---LDLEDYSSE-----NEGDDDDDDEVFEKLLPNSINP---- 198
           +           ++I E    DL+ Y++       EG      E++ ++L   I P    
Sbjct: 691 LQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLIT 750

Query: 199 --------------SSEPPLLP----KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                          +   +L     K   P   IY TL+ G+  EG + +  R+   M 
Sbjct: 751 YSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEML 810

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSM 267
              D    PD  TY  +V+  VK G++
Sbjct: 811 ---DKGLVPDDTTYDILVNGKVKDGNL 834



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 103/242 (42%), Gaps = 18/242 (7%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
           R+   ++   +N LL  Y +  +I+ A +    + +   I P +   NI +   +  +  
Sbjct: 147 RLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEK-DIVPCLTVMNIFLSELVKNNMI 205

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A   +N+M ++G+     + + +++A     + + A   F E  ++  V++D  A+++
Sbjct: 206 REARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREA-KNKGVELDARAYSI 264

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           ++E  C+      A  ++  M++ G+ P+   +  +   I +  K G+ L       E  
Sbjct: 265 VIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRV---IGVCMKQGKML-------EAV 314

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           +VK E ++     P  +     L+        +      ALE+   M E+GI PN   Y 
Sbjct: 315 KVKGEMLSCGK--PMNVVVATTLMKGYC----KQGDLDSALELFDKMNENGICPNNVTYA 368

Query: 519 KI 520
            I
Sbjct: 369 VI 370


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 171/385 (44%), Gaps = 21/385 (5%)

Query: 69  ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
             +G+  K  Q+   M E G  PDV+TY+ +I    R ++ H    +L R+ + GI    
Sbjct: 375 CQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPND 434

Query: 129 TTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             + +L+  Y   G +++A +  V   R G      +I    L  +  E    + +    
Sbjct: 435 VLYTTLICYYCKAGYVKVALKHFVDIYRRGLVAN-PVIHNALLRAFYREGMITEAEHFRQ 493

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           +   +  S N  S               +  ++  Y + G++ +   +   M R      
Sbjct: 494 YMSRMNISFNSVS---------------FNCIIDSYCHRGKIVEAFSVYDDMVRY---GH 535

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P+  TY  ++  L + G + +A+Q +  +  I    +  T+N LL G C+   +D+A +
Sbjct: 536 SPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALD 595

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           +  +M  +  + PD+ +Y IL+ GF        AL     M  +G+ P  ++YT L+   
Sbjct: 596 ICEKMVKNNCL-PDIHTYTILLSGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGL 654

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               Q K A+ VF E++    +  D +A+N L+ GY + G V   KR++  M +N  YPN
Sbjct: 655 INEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPN 714

Query: 428 VATYGSLANGISLARKPGEALLLWK 452
            A+Y  L +G     +  ++L L+K
Sbjct: 715 SASYNILMHGYVKRGQFSKSLYLYK 739



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 175/421 (41%), Gaps = 94/421 (22%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLL 112
            ++A YN +L+     G+ K  L + + M     + D+ TYN+MI KLC   R++R  LL
Sbjct: 187 SNSATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLL 246

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
              L+R+ +  +T    T+ +L+  + G G +  A  +   M                  
Sbjct: 247 ---LKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHM------------------ 285

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                                           L +T  P+   YTT++ GY    R+   
Sbjct: 286 --------------------------------LRQTLVPSVATYTTMIDGYCRNRRIDKA 313

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +L  M   E     P  +TY+ +++   K   +  A  ++ ++   G+  N+    IL
Sbjct: 314 LSVLSEM---EITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTIL 370

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G+CQ  +I KAK++L+ M +D  I+PDVV+Y+ LI+G   +          + M+  G
Sbjct: 371 IDGFCQVGEISKAKQILKSMLEDG-IDPDVVTYSALINGMCRMAKMHETKEILSRMQKSG 429

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLR-----DP-------------------- 387
           I P  + YTTL+  +  +   K+A K F ++ R     +P                    
Sbjct: 430 ILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAE 489

Query: 388 ---------RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
                     +  + V++N +++ YC  G + EA  + + M   G  PNV TY +L  G+
Sbjct: 490 HFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGL 549

Query: 439 S 439
            
Sbjct: 550 C 550



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 124/530 (23%), Positives = 229/530 (43%), Gaps = 56/530 (10%)

Query: 1    MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
            M+R G+ P+V  +  ++  L   G            +V  +   F   DI   S  D   
Sbjct: 530  MVRYGHSPNVCTYQNLLRGLCQGGH-----------LVQAKQFMFCLLDI--PSAVDEKT 576

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            +NA+L      G   + L + ++M +    PD+ TY +++    R  +    + +L+ +L
Sbjct: 577  FNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMML 636

Query: 121  EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            E G+      +  L+   +  G ++ A  + Q +      +CK     D   Y+S   G 
Sbjct: 637  EKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEI------ICKEGLYADCIAYNSLMNGY 690

Query: 181  -DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                +    ++++ +         +      PNS  Y  LM GY+  G+ S ++ +   M
Sbjct: 691  LKGGNVNTIKRMMSD---------MYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYM 741

Query: 240  RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             R+      PD+VTY  ++  L + G +D A + L +M   G+  +++ ++IL+  + ++
Sbjct: 742  VRK---GIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEK 798

Query: 300  LQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPT 356
             ++  A  L   M     + P   +++ +I+G I    +D S   L   +EM   G+ P 
Sbjct: 799  SKMHNALRLFNCM-KCLHLSPSSKTFSAMINGLIRKNYLDQSHEVL---HEMLQVGLQPN 854

Query: 357  KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
               Y  L+ A     +   A ++ +EM     V  + VA + ++ G CR G +EEA  + 
Sbjct: 855  HTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAE-VAESSIIRGLCRCGKLEEAVIVF 913

Query: 417  ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
              M  +G  P VAT+ +L + +    K  +AL L K + E C +K + V+ +  L   L 
Sbjct: 914  SNMMRSGMVPTVATFTTLMHSLCKESKIADALHL-KRLMELCRLKVDVVSYNV-LITGLC 971

Query: 477  PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
             D+ + D              AL++   M+  G+ PN T Y  +   M+S
Sbjct: 972  KDKHISD--------------ALDLYGEMKSKGLWPNVTTYITLTGAMYS 1007



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 183/421 (43%), Gaps = 27/421 (6%)

Query: 37  VVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
           +++KR+RK        D  PD   YN ++N     GK      +F+ M      P V TY
Sbjct: 245 LLLKRMRK-------DDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATY 297

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
             MI    R  R    + VL  +   G+     T+ +L+  Y     L  A  ++  ++ 
Sbjct: 298 TTMIDGYCRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKS 357

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
               + K +  + ++ +     G+     ++ + +L + I+P             +   Y
Sbjct: 358 RGITINKTMCTILIDGFC--QVGEISKAKQILKSMLEDGIDP-------------DVVTY 402

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           + L+ G     ++ +T  +L    R + +   P+ V YTT++    KAG +  A +   +
Sbjct: 403 SALINGMCRMAKMHETKEILS---RMQKSGILPNDVLYTTLICYYCKAGYVKVALKHFVD 459

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           + R G+ AN + +N LL+ + ++  I +A E  R+      I  + VS+N +ID +    
Sbjct: 460 IYRRGLVANPVIHNALLRAFYREGMITEA-EHFRQYMSRMNISFNSVSFNCIIDSYCHRG 518

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
               A + +++M   G +P   +Y  L++          A K F   L D    VD   +
Sbjct: 519 KIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQA-KQFMFCLLDIPSAVDEKTF 577

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N L+ G C+ G ++EA  I E+M +N   P++ TY  L +G     K   AL++ + + E
Sbjct: 578 NALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMMLE 637

Query: 457 R 457
           +
Sbjct: 638 K 638



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 190/403 (47%), Gaps = 27/403 (6%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY-NVMIKLCARASRKHLLVFV 115
           ++ ++N ++++  + GK  +   ++D M  +G  P+V TY N++  LC          F+
Sbjct: 503 NSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFM 562

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +L++   +   TF +L+     +G L+ A  I + M    ++ C      D+  Y+ 
Sbjct: 563 F-CLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMV---KNNCLP----DIHTYTI 614

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G          K+LP  +       +L K   P++  YT L+ G +NEG+V     +
Sbjct: 615 LLSGFCRKG-----KILPALVMLQM---MLEKGVVPDTVAYTCLLNGLINEGQVKAASYV 666

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              +  +E    + D + Y ++++  +K G+++  ++++++M +  V  N  +YNIL+ G
Sbjct: 667 FQEIICKE--GLYADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHG 724

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           Y ++ Q  K+  L + M     I PD V+Y +LI G     LID    A+ F  +M   G
Sbjct: 725 YVKRGQFSKSLYLYKYMVRKG-IRPDNVTYRLLILGLSECGLIDI---AVKFLEKMVLEG 780

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I P K+ +  L+ +F+  S+   A ++F+ M +   +      ++ ++ G  R   ++++
Sbjct: 781 IFPDKLVFDILITSFSEKSKMHNALRLFNCM-KCLHLSPSSKTFSAMINGLIRKNYLDQS 839

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
             ++  M + G  PN   Y +L N      +   A  L +E+K
Sbjct: 840 HEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMK 882



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 143/305 (46%), Gaps = 25/305 (8%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
            NS  Y T++  Y+ +GR    + +L  M R    A   D  TY  ++  L +     RA
Sbjct: 187 SNSATYNTILHWYVKKGRFKAALCVLEDMERDSIQA---DIYTYNIMIDKLCRIKRSARA 243

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L  M +  +  +  TYN L+ G+  + +I+ A+ +   M     + P V +Y  +ID
Sbjct: 244 FLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLV-PSVATYTTMID 302

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPR 388
           G+        AL+  +EM   G+ P++++Y+ L+  +    +  +     D M  L+   
Sbjct: 303 GYCRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYC---KVSMLGPALDLMVDLKSRG 359

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           + ++     +L++G+C++G + +AK+I++ M E+G  P+V TY +L NG+    K  E  
Sbjct: 360 ITINKTMCTILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHET- 418

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
              KEI  R  ++K G+           P++ L   L     +A + + AL+    +   
Sbjct: 419 ---KEILSR--MQKSGI----------LPNDVLYTTLICYYCKAGYVKVALKHFVDIYRR 463

Query: 509 GIPPN 513
           G+  N
Sbjct: 464 GLVAN 468



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 143/363 (39%), Gaps = 56/363 (15%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           + N  ++  L+K Y+ E +V D    +  M   +D       V   +++ ALV+ G    
Sbjct: 82  STNHVVFELLIKAYVKERKVLDAAVAVFFM---DDCGFKASPVACNSILKALVEEGESKY 138

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA------------- 316
               L E      P +  T NILL   C   +  KA+++L++M                 
Sbjct: 139 VWLFLRESLARKFPLDVTTCNILLNSLCTNGEFRKAEDMLQKMKSCCLSNSATYNTILHW 198

Query: 317 --------------------KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                                I+ D+ +YNI+ID    I  SA A      MR   + P 
Sbjct: 199 YVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLTPD 258

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
           + +Y TL+  F    +   A  VF+ MLR   V   +  +  +++GYCR   +++A  ++
Sbjct: 259 ECTYNTLINGFFGEGKINHARCVFNHMLRQTLVP-SVATYTTMIDGYCRNRRIDKALSVL 317

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--------C---------- 458
             M+  G  P+  TY +L NG       G AL L  ++K R        C          
Sbjct: 318 SEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQV 377

Query: 459 -EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            E+ K      S L   + PD     AL +   R A   +  EI++ M++ GI PN   Y
Sbjct: 378 GEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLY 437

Query: 518 KKI 520
             +
Sbjct: 438 TTL 440



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 144/336 (42%), Gaps = 33/336 (9%)

Query: 56   PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
            P++A+YN +++     G+  K L L+  M   G +PD +TY ++I   +      + V  
Sbjct: 713  PNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKF 772

Query: 116  LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-----EGRRDVCKIIRELDL 170
            LE+++  GI      F  L+ ++     +  A  +   M+        +    +I  L  
Sbjct: 773  LEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLIR 832

Query: 171  EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
            ++Y        D   EV  ++L   +              PN   Y  L+      G + 
Sbjct: 833  KNYL-------DQSHEVLHEMLQVGLQ-------------PNHTHYIALVNAKCRVGEID 872

Query: 231  DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
               R+   M+        P  V  ++++  L + G ++ A  V + M R G+     T+ 
Sbjct: 873  RAFRLKEEMKAI---GIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTVATFT 929

Query: 291  ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
             L+   C++ +I  A  L R M +  +++ DVVSYN+LI G       + AL  + EM++
Sbjct: 930  TLMHSLCKESKIADALHLKRLM-ELCRLKVDVVSYNVLITGLCKDKHISDALDLYGEMKS 988

Query: 351  RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +G+ P   +Y TL    A+ S  ++ N   +E+L D
Sbjct: 989  KGLWPNVTTYITLTG--AMYSTGRMQNG--EELLED 1020


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 181/421 (42%), Gaps = 44/421 (10%)

Query: 49  DIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108
           D +     +   +N +L+     GK  +   L+D++   G  P+V++YN +I    R   
Sbjct: 240 DALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDN 299

Query: 109 KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR---------- 158
            +    V + +L+ G T    TF  L+  Y   GD+E A +I   M++            
Sbjct: 300 INAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGI 359

Query: 159 --RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
             + +CK  R           EG D     +F K +     P+  P             Y
Sbjct: 360 IIKGLCKAGRSF---------EGRD-----LFNKFVSQGFVPTCMP-------------Y 392

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            T++ G++ EG ++    +    R   +    P  VTYT+++    K  ++D A ++L +
Sbjct: 393 NTIIDGFIKEGNINLASNVY---REMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLND 449

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R G+  +   Y  L+ G+C++  +  A ELL E+   A + P+   YN +I GF  ++
Sbjct: 450 MKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRG-AGLSPNRFIYNSMITGFKNMN 508

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           +   A+  + +M   GI     +YT+L+     S +   A+ +  EML    +  D  A 
Sbjct: 509 NVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEML-SKGILPDDRAH 567

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            +L+ G C  G  E A++I+E M      P+V  Y +L  G        EA  L  E+ +
Sbjct: 568 TVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLD 627

Query: 457 R 457
           R
Sbjct: 628 R 628



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/516 (21%), Positives = 218/516 (42%), Gaps = 56/516 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP-DTA 59
           M  +G++P    +++V++     G+    E+++L D            D+V+  K  + A
Sbjct: 101 MRAAGWIPPEGTFTSVITACVKEGN--VAEALRLKD------------DMVNCGKSMNLA 146

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
              +++      G  +  L L +++ E G  P+ +TY+V+I  C +             +
Sbjct: 147 VATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEM 206

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ-AMREGRRDVCKIIRELD-LEDYSSEN 177
              GI   + +  S++  Y+     + A T+   A+  G  +V      L  L      N
Sbjct: 207 KTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMN 266

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           E  +  D+                  ++ K  +PN   Y  ++ G+  +  ++   ++  
Sbjct: 267 EACNLWDE------------------VIAKGISPNVVSYNNIILGHCRKDNINAACKVYK 308

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M    DN   P+ VT+T ++    K G ++ A  +   M    +     T  I++KG C
Sbjct: 309 EML---DNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLC 365

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  +  + ++L  +      + P  + YN +IDGFI   +   A   + EM   GI P+ 
Sbjct: 366 KAGRSFEGRDLFNKFVSQGFV-PTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPST 424

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++YT+L+  F   +   LA K+ ++M R   +K+DI A+  L++G+C+   ++ A  ++ 
Sbjct: 425 VTYTSLIDGFCKGNNIDLALKLLNDMKRKG-LKMDIKAYGTLIDGFCKRRDMKSAHELLN 483

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
            ++  G  PN   Y S+  G        EA+ L+K++             +  +P  LK 
Sbjct: 484 ELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKM------------VNEGIPCDLKT 531

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
              L+D L    +++     A +I   M   GI P+
Sbjct: 532 YTSLIDGL----LKSGRLLYASDIHTEMLSKGILPD 563



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 156/366 (42%), Gaps = 32/366 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G+ P+   ++ ++      GD     S+           +  D +I+    P    
Sbjct: 310 MLDNGFTPNAVTFTILMDGYFKKGDIENAFSI---------FHRMKDANIL----PTDTT 356

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              ++      G+  +   LF++    G  P  + YN +I    +    +L   V   + 
Sbjct: 357 LGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMC 416

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E+GIT    T+ SL+  +    ++++A  ++  M+  R+ +     ++D++ Y +  +G 
Sbjct: 417 EVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMK--RKGL-----KMDIKAYGTLIDGF 469

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
               D      L N +  +          +PN  IY +++ G+ N   V + + +    +
Sbjct: 470 CKRRDMKSAHELLNELRGAG--------LSPNRFIYNSMITGFKNMNNVEEAIDLY---K 518

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +  +     D  TYT+++  L+K+G +  A  +  EM   G+  +   + +L+ G C + 
Sbjct: 519 KMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKG 578

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           Q + A+++L +M     I P V+ YN LI G     +   A    +EM  RG+ P  I+Y
Sbjct: 579 QFENARKILEDMNGKNMI-PSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITY 637

Query: 361 TTLMKA 366
             L+  
Sbjct: 638 DILVNG 643



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 101/209 (48%), Gaps = 2/209 (0%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P       +++A+V+      AR++  +M  +GV  +  T +++L+   ++  I +A++ 
Sbjct: 3   PSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQH 62

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             + A    +E D  +Y+I +    L  +S  AL+   EMRA G  P + ++T+++ A  
Sbjct: 63  FLQ-AKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACV 121

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                  A ++ D+M+   +  +++     L++GYC  G +  A  ++  + E+G  PN 
Sbjct: 122 KEGNVAEALRLKDDMVNCGK-SMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNK 180

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKER 457
            TY  L +G        +A   + E+K +
Sbjct: 181 VTYSVLIDGCCKNGNIEKAFEFYSEMKTK 209



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 36/239 (15%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           D  T   ++ A +K G++  A Q   +    GV  ++  Y+I +   C +     A  LL
Sbjct: 39  DCFTLHVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLL 98

Query: 310 REM-------------------------ADDAKIEPDVV----SYNI-----LIDGFILI 335
           REM                         A+  +++ D+V    S N+     L+ G+ + 
Sbjct: 99  REMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQ 158

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            +   AL   NE+   G+ P K++Y+ L+     +   + A + + EM +   ++  + +
Sbjct: 159 GNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEM-KTKGIRSSVYS 217

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            N ++EGY +    + A  +     E+G   NV T+ +L + +    K  EA  LW E+
Sbjct: 218 LNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEV 275


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/547 (21%), Positives = 222/547 (40%), Gaps = 85/547 (15%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P  ++++ V+  L   G+   V S   +D++ K V             P+   +  V+ A
Sbjct: 173 PSFRSYNVVLDVLVV-GNCPSVASNVFYDMLSKGV------------SPNDYTFGLVMKA 219

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
              + +      L   M + G  P+ + Y  +I   ++  R    + +LE +  MG    
Sbjct: 220 LCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPD 279

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
           + TF +++  +            +  + EG     K++  + L+ ++      +D     
Sbjct: 280 VNTFNTVIYGFCR----------LNRVLEGA----KLVDRMILKGFTP-----NDMTYGY 320

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
               L  +        LL K   PN   + TL+ G++  GR+++    +    +  +N  
Sbjct: 321 LMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFV--YDKMINNGY 378

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            PD  T++T+V+ L K G    A +++ +M   G   N  TY IL+ G+C++ Q+++A  
Sbjct: 379 VPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGL 438

Query: 308 LLREM-------------------ADDAKI---------------EPDVVSYNILIDGFI 333
           +LREM                       KI               +PD+ ++N LI G  
Sbjct: 439 ILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLC 498

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            +D+   AL  + +M   G+    +++ TL+ AF    + + A K+ ++ML      +D 
Sbjct: 499 RVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRG-CPLDE 557

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           + +N L++  C+ G VE+   + E M   G  P++ T   L NG   A K   AL   ++
Sbjct: 558 ITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRD 617

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           +  R                   PD    ++L +   +    ++AL +   ++  GI P+
Sbjct: 618 MIHR----------------GFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPD 661

Query: 514 KTKYKKI 520
              Y  +
Sbjct: 662 SITYNTL 668



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 75/390 (19%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   ++ ++N     G     L+L + M   G KP++ TY ++I    +  +      +
Sbjct: 380 PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLI 439

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +L  G +L    + +L++A    G +  A   +    E     CK     D+  ++S
Sbjct: 440 LREMLTKGFSLNTVGYNALISALCKHGKIHEA---LDMFGEMSSKGCKP----DIFTFNS 492

Query: 176 ENEG----DDDDD------DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225
              G    D+ +D      D V E ++ NS+                   + TL+  ++ 
Sbjct: 493 LIFGLCRVDEMEDALALYRDMVLEGVIANSVT------------------FNTLIHAFLR 534

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
            G + + ++++  M  +       D +TY  ++ AL K G++++   +  EM R G+  +
Sbjct: 535 RGEIQEALKLVNDMLFR---GCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPS 591

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
            IT NIL+ G+C   ++  A E +R+M       PD+V+YN LI+G         AL  F
Sbjct: 592 IITCNILINGFCTAGKVHNALEFMRDMIHRG-FSPDIVTYNSLINGLCKRGRIQEALNLF 650

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            +++A GI P  I+Y TL                              + W       CR
Sbjct: 651 EKLQAEGIQPDSITYNTL------------------------------ICW------LCR 674

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLA 435
            G  ++A  ++ R  ENGF PN  T+  L 
Sbjct: 675 EGAFDDACFLLYRGVENGFVPNDVTWNILV 704



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 158/372 (42%), Gaps = 61/372 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           M+ +GY+P V  +ST+V+ L   G               G   ++  + +++    K   
Sbjct: 373 MINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQ 432

Query: 48  PD---------IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            +         +      +T  YNA+++A    GK  + L +F +M   G KPD+ T+N 
Sbjct: 433 LEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNS 492

Query: 99  MI-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
           +I  LC     +  L    + +LE G+     TF +L+ A++  G+++ A  +V  M   
Sbjct: 493 LIFGLCRVDEMEDALALYRDMVLE-GVIANSVTFNTLIHAFLRRGEIQEALKLVNDM--- 548

Query: 158 RRDVCKIIRELDLEDYSSEN-------EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
                 + R   L++ +           G  +    +FE+++   + PS           
Sbjct: 549 ------LFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPS----------- 591

Query: 211 PNSRIYTT--LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
               I T   L+ G+   G+V + +     MR        PD VTY ++++ L K G + 
Sbjct: 592 ----IITCNILINGFCTAGKVHNALEF---MRDMIHRGFSPDIVTYNSLINGLCKRGRIQ 644

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +  ++   G+  + ITYN L+   C++   D A  LL    ++  + P+ V++NIL
Sbjct: 645 EALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFV-PNDVTWNIL 703

Query: 329 IDGFILIDDSAG 340
           +  F    +S G
Sbjct: 704 VYNFGKQSNSEG 715



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 119/320 (37%), Gaps = 57/320 (17%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           ++  +MK Y   G      R+L  M+        P   +Y  V+  LV       A  V 
Sbjct: 141 LFILIMKYYGRAGLPGQATRLLLDMKGVY--CCEPSFRSYNVVLDVLVVGNCPSVASNVF 198

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M   GV  N  T+ +++K  C   ++D A  LLR+M     + P+ + Y  LID    
Sbjct: 199 YDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCV-PNSMIYQTLIDALSK 257

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            D    AL    EM   G  P                                    D+ 
Sbjct: 258 RDRVDEALKLLEEMFLMGCPP------------------------------------DVN 281

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS-----------LARK 443
            +N ++ G+CR+  V E  ++++RM   GF PN  TYG L +G+            L++ 
Sbjct: 282 TFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV 341

Query: 444 PGEALLLWKEIKERCEVKKEGVNA------DSDLPPPLKPDEELLDALADICVRAAFFRK 497
           PG  ++ +  +     V+   +N       D  +     PD      L +   +   F  
Sbjct: 342 PGPNVVHFNTLVNG-FVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGS 400

Query: 498 ALEIVACMEEHGIPPNKTKY 517
           ALE+V  M+  G  PN   Y
Sbjct: 401 ALELVNDMDAKGCKPNLNTY 420


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 173/385 (44%), Gaps = 34/385 (8%)

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             YN ++ A    G  ++  ++ + M + G KP + TYN +I    +  R      +L  
Sbjct: 2   VTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIE 61

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           +L +G++   TT+ +L+       +  E  E   + +R+G           DL  +SS  
Sbjct: 62  MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP--------DLVSFSSLM 113

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLL----PKTFA--PNSRIYTTLMKGYMNEGRVSD 231
                    VF +      N   +  L+     K F   P++ IYT LM GY   G + +
Sbjct: 114 A--------VFSR------NRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLE 159

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
            +++   M  Q       D + Y T+++ L K   +  A ++  EM   G   +  T+  
Sbjct: 160 ALKIRDEMLEQ---GCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTT 216

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G+CQ   + KA  L   M     I+PD+V+YN LIDGF  + +   A   ++ M +R
Sbjct: 217 LIHGHCQDGNMTKALSLFGTMTQ-RNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISR 275

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
            I P  I+Y  L+ A+        A +++D M+ +  +K  +V  N +++GYCR G   +
Sbjct: 276 KIFPNHITYGILINAYCSVGHVSEAFRLWDVMI-EKGIKPTLVTCNTVIKGYCRSGDSSK 334

Query: 412 AKRIIERMKENGFYPNVATYGSLAN 436
           A   + RM   G  P+  +Y +L N
Sbjct: 335 ADEFLGRMIAKGVAPDHISYNTLIN 359



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 140/302 (46%), Gaps = 21/302 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+  Y  EG + +   ++ +M    D    P   TY  +++ L K G   RA+ +L 
Sbjct: 4   YNTLIGAYCREGLLEEAFEIMNSM---ADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM  IG+  +  TYN LL   C++    +AKE+  EM     + PD+VS++ L+  F   
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVV-PDLVSFSSLMAVFSRN 119

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                AL +F +M+  G+ P  + YT LM  +  +     A K+ DEML    V +D++A
Sbjct: 120 RHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCV-LDVIA 178

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N ++ G C+  ++ +A ++ + M E G  P+  T+ +L +G        +AL L+  + 
Sbjct: 179 YNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMT 238

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
           +R                 +KPD    + L D   +     KA E+   M    I PN  
Sbjct: 239 QR----------------NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHI 282

Query: 516 KY 517
            Y
Sbjct: 283 TY 284



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 142/317 (44%), Gaps = 21/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L    +P++  Y TL+         S+   + G M RQ      PD V+++++++   +
Sbjct: 62  MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQ---GVVPDLVSFSSLMAVFSR 118

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              +D+A     +M + G+  + + Y +L+ GYC+   + +A ++  EM +   +  DV+
Sbjct: 119 NRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCV-LDVI 177

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +YN +++G         A   F+EM  RG  P   ++TTL+           A  +F  M
Sbjct: 178 AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTM 237

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            +   +K DIVA+N L++G+C++G +E+A  + + M     +PN  TYG L N       
Sbjct: 238 TQ-RNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGH 296

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EA  LW  + E+                 +KP     + +     R+    KA E + 
Sbjct: 297 VSEAFRLWDVMIEK----------------GIKPTLVTCNTVIKGYCRSGDSSKADEFLG 340

Query: 504 CMEEHGIPPNKTKYKKI 520
            M   G+ P+   Y  +
Sbjct: 341 RMIAKGVAPDHISYNTL 357



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 148/339 (43%), Gaps = 40/339 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KP    YNA++N     G+  +   +  +M   G  PD  TYN ++    R         
Sbjct: 33  KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE 92

Query: 115 VLERILEMGITLCMTTFQSLVAAY----------VGFGDLE----IAETIVQAM------ 154
           +   +L  G+   + +F SL+A +          V F D++    + + ++  +      
Sbjct: 93  IFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 152

Query: 155 REGRRDVCKIIRE--------LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
           R G       IR+        LD+  Y++   G         EK+L ++     E  ++ 
Sbjct: 153 RNGNMLEALKIRDEMLEQGCVLDVIAYNTILNG------LCKEKMLTDADKLFDE--MVE 204

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +   P+   +TTL+ G+  +G ++  + + G M ++      PD V Y T++    K G 
Sbjct: 205 RGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN---IKPDIVAYNTLIDGFCKVGE 261

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           M++A ++   M    +  N ITY IL+  YC    + +A  L   M +   I+P +V+ N
Sbjct: 262 MEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG-IKPTLVTCN 320

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +I G+    DS+ A  F   M A+G+AP  ISY TL+ 
Sbjct: 321 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 20/145 (13%)

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +V +N L+  YCR GL+EEA  I+  M + G  P++ TY ++ NG+    +   A  +  
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E+                L   L PD    + L     R   F +A EI   M   G+ P
Sbjct: 61  EM----------------LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP 104

Query: 513 NKTKYKKIYVEMHSRMFTSKHASQA 537
           +   +  + + + SR   ++H  QA
Sbjct: 105 DLVSFSSL-MAVFSR---NRHLDQA 125



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 13/154 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP    ++T++      G+    +++ LF  + +R           + KPD  A
Sbjct: 202 MVERGALPDFYTFTTLIHGHCQDGN--MTKALSLFGTMTQR-----------NIKPDIVA 248

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++    +G+ +K  +L+D M      P+ +TY ++I              + + ++
Sbjct: 249 YNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMI 308

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
           E GI   + T  +++  Y   GD   A+  +  M
Sbjct: 309 EKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRM 342



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 15/198 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G +  V A++T+++ L    +    ++ KLFD +V+R            + PD   
Sbjct: 167 MLEQGCVLDVIAYNTILNGLCK--EKMLTDADKLFDEMVER-----------GALPDFYT 213

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  +++     G   K L LF  M +   KPD++ YN +I    +         + + ++
Sbjct: 214 FTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMI 273

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
              I     T+  L+ AY   G +  A  +   M E       +     ++ Y     GD
Sbjct: 274 SRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYC--RSGD 331

Query: 181 DDDDDEVFEKLLPNSINP 198
               DE   +++   + P
Sbjct: 332 SSKADEFLGRMIAKGVAP 349


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 23/338 (6%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K   PN   Y  +M  +     +     +   M  +      P++ TY+ ++    K   
Sbjct: 478 KGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEK---GLEPNNFTYSILIDGFFKNKD 534

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
              A  V+ +M      AN + YN ++ G C+  Q  KAKE+L+ +  + +      SYN
Sbjct: 535 EQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYN 594

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            +IDGF+ + D+  A+  + EM   G +P  +++T+L+  F  S++  LA ++  EM + 
Sbjct: 595 SIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEM-KS 653

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             +K+D+ A+  L++G+C+   ++ A  +   + E G  PNV+ Y SL +G     K   
Sbjct: 654 MELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDA 713

Query: 447 ALLLWKEIKE---RCE-----------VKKEGVNADSDLPPPL-----KPDEELLDALAD 487
           A+ L+K++      C+           +K   +N  SDL   L      PDE L   L +
Sbjct: 714 AIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVN 773

Query: 488 ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
              +   F KA +++  M++  + PN   Y  +    H
Sbjct: 774 GLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHH 811



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 168/394 (42%), Gaps = 19/394 (4%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           GK          M + G +P+V+ YN M+    R     L   +   +LE G+     T+
Sbjct: 463 GKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTY 522

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
             L+  +    D + A  ++  M     +  ++I    +        G      E+ + L
Sbjct: 523 SILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKV--GQTSKAKEMLQNL 580

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
           +              K ++ +   Y +++ G++   +V DT   +   R   +N   P+ 
Sbjct: 581 IKE------------KRYSMSCTSYNSIIDGFV---KVGDTDSAVETYREMSENGKSPNV 625

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           VT+T++++   K+  MD A ++  EM  + +  +   Y  L+ G+C++  +  A  L  E
Sbjct: 626 VTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSE 685

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           + +   + P+V  YN LI GF  +     A+  + +M   GI+    +YTT++       
Sbjct: 686 LPE-LGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDG 744

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
              LA+ ++ E+L D  +  D +   +LV G  + G   +A +++E MK+    PNV  Y
Sbjct: 745 NINLASDLYSELL-DLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLY 803

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
            ++  G        EA  L  E+ E+  V  + V
Sbjct: 804 STVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTV 837



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 35/245 (14%)

Query: 228 RVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           +  D V  L  +R        P    TYT+V+ A VK G+M+ A +V+ EM   G+P + 
Sbjct: 286 KTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSV 345

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           I    L+ GYC+  ++ KA +L   M ++  + PD V ++++++ F    +   A+ F+ 
Sbjct: 346 IAATSLVNGYCKGNELGKALDLFNRMEEEG-LAPDKVMFSVMVEWFCKNMEMEKAIEFYM 404

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE------------------------ 382
            M++  IAP+ +   T+++    +  P+ A ++F++                        
Sbjct: 405 RMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQGK 464

Query: 383 ---------MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
                    M+    ++ ++V +N ++  +CRM  ++ A+ I   M E G  PN  TY  
Sbjct: 465 VDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSI 524

Query: 434 LANGI 438
           L +G 
Sbjct: 525 LIDGF 529



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 144/406 (35%), Gaps = 118/406 (29%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAM--------------------------------RRQE 243
           YT+++  ++ EG + + VR++  M                                 R E
Sbjct: 313 YTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRME 372

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG-------- 295
           +    PD V ++ +V    K   M++A +    M  + +  + +  + +++G        
Sbjct: 373 EEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPE 432

Query: 296 --------------------------YCQQLQIDKAKELLREMADDAKIEPDVVSYN--- 326
                                     +C+Q ++D A   L+ M +   IEP+VV YN   
Sbjct: 433 AALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLK-MMEQKGIEPNVVFYNNMM 491

Query: 327 --------------------------------ILIDGFILIDDSAGALTFFNEMRARGIA 354
                                           ILIDGF    D   A    N+M A    
Sbjct: 492 LAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFE 551

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
             ++ Y T++       Q   A ++   ++++ R  +   ++N +++G+ ++G  + A  
Sbjct: 552 ANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVE 611

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
               M ENG  PNV T+ SL NG   + +   AL +  E+K                   
Sbjct: 612 TYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSM----------------E 655

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           LK D     AL D   +    + A  + + + E G+ PN + Y  +
Sbjct: 656 LKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSL 701



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 136/321 (42%), Gaps = 56/321 (17%)

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
            +YN++++    +G     ++ + +M E G  P+V+T+  +I    +++R  L + +   
Sbjct: 591 TSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHE 650

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +  M + L +  + +L+  +    D++ A T+                            
Sbjct: 651 MKSMELKLDLPAYGALIDGFCKKNDMKTAYTLF--------------------------- 683

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
                                SE P L     PN  +Y +L+ G+ N G++   + +   
Sbjct: 684 ---------------------SELPEL--GLMPNVSVYNSLISGFRNLGKMDAAIDLY-- 718

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            ++  ++    D  TYTT++  L+K G+++ A  + +E+  +G+  + I + +L+ G  +
Sbjct: 719 -KKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSK 777

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           + Q  KA ++L EM     + P+V+ Y+ +I G     +   A    +EM  +GI     
Sbjct: 778 KGQFLKASKMLEEMK-KKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDT 836

Query: 359 SYTTLMKAFALSSQPKLANKV 379
            +  L+       +P  A+K+
Sbjct: 837 VFNLLVSGRV--EKPPAASKI 855



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 73/385 (18%), Positives = 145/385 (37%), Gaps = 58/385 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YN ++ A   +        +F +M E G +P+  TY+++I    +   +     
Sbjct: 481 EPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWD 540

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V+ ++           + +++      G    A+ ++Q + + +R        +    Y+
Sbjct: 541 VINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKR------YSMSCTSYN 594

Query: 175 SENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           S  +G     D D   E + ++  N               +PN   +T+L+ G+    R+
Sbjct: 595 SIIDGFVKVGDTDSAVETYREMSENGK-------------SPNVVTFTSLINGFCKSNRM 641

Query: 230 SDTVRMLGAMRRQE--------------------------------DNASHPDHVTYTTV 257
              + M   M+  E                                +    P+   Y ++
Sbjct: 642 DLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSL 701

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           +S     G MD A  +  +M   G+  +  TY  ++ G  +   I+ A +L  E+ D   
Sbjct: 702 ISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLD-LG 760

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           I PD + + +L++G         A     EM+ + + P  + Y+T++           A 
Sbjct: 761 IVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAF 820

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEG 402
           ++ DEML    V  D V +N+LV G
Sbjct: 821 RLHDEMLEKGIVHDDTV-FNLLVSG 844



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 130/329 (39%), Gaps = 70/329 (21%)

Query: 199 SSEPPLLPKTFAPN-------------SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           S+ P L+P     N              R +  L+  Y+   R+   V   G M    D 
Sbjct: 142 SNNPTLIPNVMVNNLVDSSKRFGFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMV---DR 198

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P       V+S+LV++  +D A+++  +M  IGV  + +T  +L++   ++ + ++A
Sbjct: 199 KVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEA 258

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTTLM 364
            ++ R +      EPD + +++ +       D   AL    EMR + G+  ++ +YT+++
Sbjct: 259 VKIFRRVMSRGA-EPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVI 317

Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
            AF                                     + G +EEA R+++ M   G 
Sbjct: 318 VAFV------------------------------------KEGNMEEAVRVMDEMVGFGI 341

Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
             +V    SL NG     + G+AL L+  ++E      EG          L PD+ +   
Sbjct: 342 PMSVIAATSLVNGYCKGNELGKALDLFNRMEE------EG----------LAPDKVMFSV 385

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPN 513
           + +   +     KA+E    M+   I P+
Sbjct: 386 MVEWFCKNMEMEKAIEFYMRMKSVRIAPS 414



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 44/245 (17%), Positives = 97/245 (39%), Gaps = 53/245 (21%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K D  AY A+++        K    LF ++ E G  P+V  YN +I       +    + 
Sbjct: 657 KLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAID 716

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           + ++++  GI+  + T+ +++   +  G++ +A                        D  
Sbjct: 717 LYKKMVNDGISCDLFTYTTMIDGLLKDGNINLA-----------------------SDLY 753

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           SE                           LL     P+  ++  L+ G   +G+     +
Sbjct: 754 SE---------------------------LLDLGIVPDEILHMVLVNGLSKKGQFLKASK 786

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           ML  M++++     P+ + Y+TV++   + G+++ A ++  EM   G+  +   +N+L+ 
Sbjct: 787 MLEEMKKKD---VTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVS 843

Query: 295 GYCQQ 299
           G  ++
Sbjct: 844 GRVEK 848


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/472 (23%), Positives = 200/472 (42%), Gaps = 71/472 (15%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109
           I+   +P    Y++++         +  + L  +M   G KP+V T+ + I++  RA + 
Sbjct: 217 ILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKI 276

Query: 110 HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
           +    +L+R+ + G    + T+  L+ A      L+ A+ +   M+ GR           
Sbjct: 277 NEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHK--------- 327

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
                                                    P+   Y TL+  + ++ R 
Sbjct: 328 -----------------------------------------PDRVTYITLLDRF-SDNRD 345

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            D+V    +    E +   PD VT+T +V AL KAG+   A   L  M   G+  N  TY
Sbjct: 346 LDSVNQFWS--EMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTY 403

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L+ G  +  ++D A E+   M +   ++P   +Y + ID +    DS  AL  F +M+
Sbjct: 404 NTLICGLLRVHRLDDALEIFDNM-ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMK 462

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            +GIAP  ++    + + A + + + A ++F   L+D  +  D V +NM+++ Y ++G +
Sbjct: 463 TKGIAPNIVACNASLYSLAKAGRDREAKQIF-YGLKDIGLVPDSVTYNMMMKCYSKVGEI 521

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +EA +++  M EN   P+V    SL N +  A +  EA   WK      E+K        
Sbjct: 522 DEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEA---WKMFMRMKEMK-------- 570

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
            L P +     LL  L     +    ++A+E+   M + G PPN   +  ++
Sbjct: 571 -LKPTVVTYNTLLAGLG----KNGKIQEAIELFEGMVQKGCPPNTITFNTLF 617



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 207/490 (42%), Gaps = 58/490 (11%)

Query: 8    PHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
            P V  ++T+   LA  G +G + E+++LF+ +V++              P+T  +N + +
Sbjct: 573  PTVVTYNTL---LAGLGKNGKIQEAIELFEGMVQK-----------GCPPNTITFNTLFD 618

Query: 67   ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLER---ILEM 122
                  +    L++  +M + G  PDV TYN +I  L      K  + F  +    +   
Sbjct: 619  CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPD 678

Query: 123  GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD----------VCKIIRELDLED 172
             +TLC     +L+   V  G +E A  I+        D          +  I+ E  +++
Sbjct: 679  FVTLC-----TLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDN 733

Query: 173  YSSENE-----GDDDDDDEVFEKLLPNSI--NPSSEPPLLPKTFA------PNSRIYTTL 219
              S +E     G   D D +   ++  S   N +S   +L + F       P    Y  L
Sbjct: 734  AVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLL 793

Query: 220  MKGYMNEGRVSDTVRMLGAMRRQEDNASH-PDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
            + G +     +D + +   +  Q  N    PD  TY  ++ A  K+G +D   ++  EM+
Sbjct: 794  IGGLLE----ADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMS 849

Query: 279  RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
                  N IT+NI++ G  +   +D A +L  ++  D    P   +Y  LIDG       
Sbjct: 850  AHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRL 909

Query: 339  AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
              A   F  M   G  P    Y  L+  F  + +   A  +F  M+++  V+ D+  +++
Sbjct: 910  YEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG-VRPDLKTYSV 968

Query: 399  LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
            LV+  C +G V+E       +KE+G  P+V  Y  + NG+    +  EAL+L+ E+K   
Sbjct: 969  LVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMK--- 1025

Query: 459  EVKKEGVNAD 468
              K  G+  D
Sbjct: 1026 --KSRGITPD 1033



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 161/359 (44%), Gaps = 21/359 (5%)

Query: 80   LFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
            LF++   + G +P + TYN++I     A    +   V  ++   G    + T+  L+ AY
Sbjct: 773  LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAY 832

Query: 139  VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
               G ++    I + M     +   I   + +        G+ DD  +++  L+ +    
Sbjct: 833  GKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKA--GNVDDALDLYYDLMSD---- 886

Query: 199  SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                    + F+P +  Y  L+ G    GR+ +  ++   M    D    P+   Y  ++
Sbjct: 887  --------RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM---SDYGCRPNCAIYNILI 935

Query: 259  SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
            +   KAG  D A  +   M + GV  +  TY++L+   C   ++D+     RE+ +   +
Sbjct: 936  NGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESG-L 994

Query: 319  EPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKISYTTLMKAFALSSQPKLAN 377
             PDVV YN++I+G         AL  FNEM+ +RGI P   +Y +L+    ++   + A 
Sbjct: 995  NPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAG 1054

Query: 378  KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            K+++E+ R   ++ ++  +N L+ GY   G  E A  + + M   GF PN  TY  L N
Sbjct: 1055 KIYNEIQR-AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1112



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 3/244 (1%)

Query: 211  PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
            PN+  +  ++ G +  G V D + +   +    D +  P   TY  ++  L K+G +  A
Sbjct: 855  PNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS--PTACTYGPLIDGLSKSGRLYEA 912

Query: 271  RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +Q+   M+  G   N   YNIL+ G+ +  + D A  L + M  +  + PD+ +Y++L+D
Sbjct: 913  KQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG-VRPDLKTYSVLVD 971

Query: 331  GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
               ++      L +F E++  G+ P  + Y  ++       + + A  +F+EM +   + 
Sbjct: 972  CLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGIT 1031

Query: 391  VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
             D+  +N L+      G+VEEA +I   ++  G  PNV T+ +L  G SL+ KP  A  +
Sbjct: 1032 PDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAV 1091

Query: 451  WKEI 454
            ++ +
Sbjct: 1092 YQTM 1095



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 126/320 (39%), Gaps = 27/320 (8%)

Query: 207 KTFAPNSR-IYTTLMKGYMNE-----GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
           K+ A NS  ++TT    YM E     G++ +   +   M+++       D  TY T+   
Sbjct: 108 KSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKR---IIKRDTNTYLTIFKC 164

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L   G + +A   L +M   G   N  +YN L+    +     +A E+ R M  D    P
Sbjct: 165 LSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDG-FRP 223

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            + +Y+ L+ G     D    +    EM   G+ P   ++T  ++    + +   A ++ 
Sbjct: 224 SLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 283

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             M  D     D+V + +L++  C    ++ AK +  +MK     P+  TY +L +  S 
Sbjct: 284 KRM-DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSD 342

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALE 500
            R        W E+++   V                PD      L D   +A  F +A  
Sbjct: 343 NRDLDSVNQFWSEMEKDGHV----------------PDVVTFTILVDALCKAGNFGEAFA 386

Query: 501 IVACMEEHGIPPNKTKYKKI 520
            +  M + GI PN   Y  +
Sbjct: 387 KLDVMRDQGILPNLHTYNTL 406


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 8/219 (3%)

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           LM G +  G + D   +   M R+      P  +++  V++ L K G +++A  ++ +M 
Sbjct: 134 LMSGLVKVGEIGDMEFVYKEMIRRR---IEPTLISFNIVINGLCKVGKLNKAGDIIEDMK 190

Query: 279 RIGVPANRITYNILLKGYCQQLQID---KAKELLREMADDAKIEPDVVSYNILIDGFILI 335
             GV AN ITYN L+ GYC+  +I    KA  +L+EM  D  I P+ V++NILIDGF   
Sbjct: 191 VRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADG-ICPNEVTFNILIDGFCKD 249

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
            + + A+  F EM  +G+ P  ++Y +L+     + +   A  + D+M+ +  +K +I+ 
Sbjct: 250 KNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMV-NSCLKPNIIT 308

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            N L+ G+C+  +V++A  + + M + G  PNV TY  L
Sbjct: 309 HNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNIL 347



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 180/413 (43%), Gaps = 37/413 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           K    + N +++    +G+      ++ +M     +P ++++N++I    +  + +    
Sbjct: 125 KLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGD 184

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDY 173
           ++E +   G++  + T+ +L+  Y   G +         ++E R D +C           
Sbjct: 185 IIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICP---------- 234

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA--------PNSRIYTTLMKGYMN 225
                      +EV   +L +            K FA        PN   Y +L+ G  N
Sbjct: 235 -----------NEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCN 283

Query: 226 EGRVSDTVRMLGAMRRQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
            G+V++      A+R Q  N+   P+ +T+  +++   K   + +A ++  +M + G+  
Sbjct: 284 NGKVNEAT----ALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITP 339

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N  TYNIL+  YC+   ++ A  L R M     + PDV +YN LI G     D   A   
Sbjct: 340 NVTTYNILIDAYCKDENMEDAFALYRIMLGKG-VCPDVSTYNCLIAGLCRKGDLEAARNL 398

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
            +EM  + +    I+Y  L+ +     + K A ++ DEM R   +K   + +N +++GYC
Sbjct: 399 VSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG-LKPSQLTYNTMIDGYC 457

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           + G +  A  +  +M++ G   NVATY  L  G     K  +A  L  E+ E+
Sbjct: 458 KEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEK 510



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 193/434 (44%), Gaps = 44/434 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G    V + + ++S L   G+ G +E V       + +R+  +P ++S        +N V
Sbjct: 123 GLKLSVTSCNPLMSGLVKVGEIGDMEFV-----YKEMIRRRIEPTLIS--------FNIV 169

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC--ARASRKHLLVFVLERILE 121
           +N    +GK  K   + + M   G   +V+TYN +I   C   +  + +    +L+ +  
Sbjct: 170 INGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRA 229

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGD 180
            GI     TF  L+  +    ++  A  +   M R+G +         ++  Y+S     
Sbjct: 230 DGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKP--------NVVTYNS----- 276

Query: 181 DDDDDEVFEKLLPNS-INPSS--EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                 +   L  N  +N ++     ++     PN   +  L+ G+     V     +  
Sbjct: 277 ------LINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFD 330

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M +Q      P+  TY  ++ A  K  +M+ A  +   M   GV  +  TYN L+ G C
Sbjct: 331 DMPKQ---GITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLC 387

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           ++  ++ A+ L+ EM D   ++ D+++YNILID      +   AL   +EM  +G+ P++
Sbjct: 388 RKGDLEAARNLVSEM-DTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQ 446

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++Y T++  +      + A  +  +M +  R+  ++  +N+L++G+C+   +E+A  ++ 
Sbjct: 447 LTYNTMIDGYCKEGNLRAALNLRSQMEKVGRL-ANVATYNVLIKGFCKKDKLEDANGLLN 505

Query: 418 RMKENGFYPNVATY 431
            M E G  PN  TY
Sbjct: 506 EMLEKGLIPNRMTY 519



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 140/311 (45%), Gaps = 18/311 (5%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           +  + N   Y TL+ GY   G++    +    ++    +   P+ VT+  ++    K  +
Sbjct: 192 RGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKN 251

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +  A +V AEM R GV  N +TYN L+ G C   ++++A  L  +M +   ++P+++++N
Sbjct: 252 VSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC-LKPNIITHN 310

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            L++GF        A   F++M  +GI P   +Y  L+ A+      + A  ++  ML  
Sbjct: 311 ALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIML-G 369

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
             V  D+  +N L+ G CR G +E A+ ++  M       ++ TY  L + +    +  +
Sbjct: 370 KGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKK 429

Query: 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
           AL L  E+  +                 LKP +   + + D   +    R AL + + ME
Sbjct: 430 ALRLLDEMCRK----------------GLKPSQLTYNTMIDGYCKEGNLRAALNLRSQME 473

Query: 507 EHGIPPNKTKY 517
           + G   N   Y
Sbjct: 474 KVGRLANVATY 484



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 117/245 (47%), Gaps = 11/245 (4%)

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
           +F  NS I   L+  Y    R   T     A +R  D        +   ++S LVK G +
Sbjct: 88  SFCANSIIVDILVWAYAKNLR---TRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEI 144

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
                V  EM R  +    I++NI++ G C+  +++KA +++ +M     +  +V++YN 
Sbjct: 145 GDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRG-VSANVITYNT 203

Query: 328 LIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
           LIDG+     I     A     EMRA GI P ++++  L+  F        A KVF EM 
Sbjct: 204 LIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMN 263

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS---LA 441
           R   VK ++V +N L+ G C  G V EA  + ++M  +   PN+ T+ +L NG     + 
Sbjct: 264 RQG-VKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMV 322

Query: 442 RKPGE 446
           ++ GE
Sbjct: 323 KQAGE 327



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 146/341 (42%), Gaps = 78/341 (22%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P+V  ++++++ L  +G              V       D  + S  KP+   
Sbjct: 262 MNRQGVKPNVVTYNSLINGLCNNGK-------------VNEATALRDQMVNSCLKPNIIT 308

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           +NA+LN        K+  +LFD M + G  P+V TYN++I   C   + +    F L RI
Sbjct: 309 HNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMED--AFALYRI 366

Query: 120 LEMGITLC--MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           + +G  +C  ++T+  L+A     GDLE A  +V  M                       
Sbjct: 367 M-LGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEM----------------------- 402

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                D   +   L+  +I                      L+    N+G +   +R+L 
Sbjct: 403 -----DTKHLKADLITYNI----------------------LIDSLCNKGEMKKALRLLD 435

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M R+      P  +TY T++    K G++  A  + ++M ++G  AN  TYN+L+KG+C
Sbjct: 436 EMCRK---GLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFC 492

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILID-----GFI 333
           ++ +++ A  LL EM +   I P+ ++Y I+ +     GF+
Sbjct: 493 KKDKLEDANGLLNEMLEKGLI-PNRMTYEIVTEEMMEKGFV 532



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 50/255 (19%)

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           S     Q+L  ++     AN I  +IL+  Y + L+     E  +  A D  ++  V S 
Sbjct: 73  STQEQTQILLSVSGDSFCANSIIVDILVWAYAKNLRTRLGFEAFKR-ASDYGLKLSVTSC 131

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N L+ G + + +  G + F                                  V+ EM+R
Sbjct: 132 NPLMSGLVKVGE-IGDMEF----------------------------------VYKEMIR 156

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
             R++  ++++N+++ G C++G + +A  IIE MK  G   NV TY +L +G     K G
Sbjct: 157 -RRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIG 215

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
           +   ++K      E++ +G+           P+E   + L D   +      A+++ A M
Sbjct: 216 K---MYKADAILKEMRADGI----------CPNEVTFNILIDGFCKDKNVSAAMKVFAEM 262

Query: 506 EEHGIPPNKTKYKKI 520
              G+ PN   Y  +
Sbjct: 263 NRQGVKPNVVTYNSL 277


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 123/522 (23%), Positives = 217/522 (41%), Gaps = 78/522 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           KPDT  YN  L+      K K    L  +M      PDV T+N++I+   +A +    + 
Sbjct: 161 KPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAIL 220

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV------------C 162
           +LE +   G+     TF +L+  ++   D+E A  I + M E   ++            C
Sbjct: 221 MLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLC 280

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--------LLPKTFAPNSR 214
           K  R  +   +  E EG   D  +V    L N +  +            +L K F  +  
Sbjct: 281 KEGRIEEALRFIYEEEGFCPD--QVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVY 338

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y +L+ G    G + + V +L  M  ++     P+ VTY T++  L K   ++ A ++ 
Sbjct: 339 TYNSLISGLCKLGEIDEAVEILHHMVSRD---CEPNTVTYNTLIGTLCKENHVEAATELA 395

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD------------- 321
             +T  GV  +  T+N L++G C     + A EL  EM +    +PD             
Sbjct: 396 RVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKG-CDPDEFTYSILIESLCS 454

Query: 322 ----------------------VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
                                 VV YN LIDG    +    A   F++M   G++ + ++
Sbjct: 455 ERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVT 514

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y TL+     S + + A ++ D+M+ +  +K D   +  +++ +C+ G ++ A  I++ M
Sbjct: 515 YNTLINGLCKSKRVEEAAQLMDQMIMEG-LKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
             NG  P++ TYG+L  G+  A +   A  L + ++ +  V           P    P  
Sbjct: 574 TLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLT---------PQAYNP-- 622

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
                +  +C R    ++A+ +   M E G PP+   YK ++
Sbjct: 623 ----VIQALCKRKR-TKEAMRLFREMMEKGDPPDVITYKIVF 659



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 179/412 (43%), Gaps = 42/412 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   +NA++N     G  K+ L++ D M E G + DV TYN +I    +       V +
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKII-------- 165
           L  ++         T+ +L+        +E A  + + +       DVC           
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCL 419

Query: 166 ---RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPS--SEPPLLPKTF-----APNSRI 215
              RE+ +E +    E   D D+  +  L+ +  +     E  +L K       A N  +
Sbjct: 420 TSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVV 479

Query: 216 YTTLMKGYMNEGRVSDT------VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           Y TL+ G     RV D       + MLG  R           VTY T+++ L K+  ++ 
Sbjct: 480 YNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSS---------VTYNTLINGLCKSKRVEE 530

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
           A Q++ +M   G+  ++ TY  +LK +CQQ  I +A ++++ M  +   EPD+V+Y  LI
Sbjct: 531 AAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNG-CEPDIVTYGTLI 589

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR--DP 387
            G         A      ++ +G+  T  +Y  +++A     + K A ++F EM+   DP
Sbjct: 590 GGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDP 649

Query: 388 RVKVDIVAWNMLVEGYCR-MGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
               D++ + ++  G C   G ++EA      M E G  P   ++G LA G+
Sbjct: 650 P---DVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGL 698



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 33/300 (11%)

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           + D A  PD   Y   +S LVKA  +     + ++M    VP +  T+NIL++  C+  Q
Sbjct: 155 ERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQ 214

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +  A  +L +M +   + PD  ++  L+ GFI   D  GAL     M   G   T +S  
Sbjct: 215 LRPAILMLEDMPNYG-LRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVN 273

Query: 362 TLMKAFALSSQPKLANK-VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            L+       + + A + +++E    P    D V +N LV G CR G +++   +++ M 
Sbjct: 274 VLVNGLCKEGRIEEALRFIYEEEGFCP----DQVTFNALVNGLCRTGHIKQGLEMMDFML 329

Query: 421 ENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCE-------------VKKEGVN 466
           E GF  +V TY SL +G+    +  EA+ +L   +   CE              K+  V 
Sbjct: 330 EKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVE 389

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRK---------ALEIVACMEEHGIPPNKTKY 517
           A ++L   L         L D+C   +  +          A+E+   M+E G  P++  Y
Sbjct: 390 AATELARVLTSK----GVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTY 445



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 53/255 (20%)

Query: 234 RMLGAMRRQEDNAS----------HPDHVTYTTVVSALVK----AGSMDRARQVLAEMTR 279
           ++L  +RRQ D++S           P++  + +V   L++    AGS D    +L +M  
Sbjct: 61  QLLDLLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHS 120

Query: 280 IGVPANRITYNILLKGYCQQLQID-KAKELLREMADDAKIEPDV---------------- 322
             +P +  T+ I L+ Y     +  +   L   M  D  ++PD                 
Sbjct: 121 SKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKL 180

Query: 323 -------------------VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
                               ++NILI           A+    +M   G+ P + ++TTL
Sbjct: 181 KLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTL 240

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           M+ F   +  + A ++  E++ +   ++  V+ N+LV G C+ G +EEA R I   +E G
Sbjct: 241 MQGFIEEADVEGALRI-KELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFI--YEEEG 297

Query: 424 FYPNVATYGSLANGI 438
           F P+  T+ +L NG+
Sbjct: 298 FCPDQVTFNALVNGL 312


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 148/310 (47%), Gaps = 23/310 (7%)

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T++ +G+    RV +  ++L  M   E  ++ PD V +  ++    KAG +  A ++L  
Sbjct: 143 TSVARGFCKAQRVDEAYQLLLDM--VEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLET 200

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD-DAKIEPDVVSYNILIDGFILI 335
           +  +G   N +TY  L+ G+C+   + +A +L + ++  D   EP+VV++N LI G    
Sbjct: 201 LVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKA 260

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           D    A     +M+AR +     +YTTLM       +    ++VF+EMLR+      +V 
Sbjct: 261 DRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG-CNPSVVT 319

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI- 454
           +  LV  +C+ G +++A+++I  M   G  P+V TY  L  G+    K   A   +++I 
Sbjct: 320 YTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKIL 379

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           +ERC              PP      +  AL   C +AA   +A++    M +  + P+ 
Sbjct: 380 RERC--------------PPCAV---VYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDP 422

Query: 515 TKYKKIYVEM 524
               K+ VEM
Sbjct: 423 ATC-KLLVEM 431



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 8/247 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   ++ L+ G    GR+ + V     M  +      P+      ++++L +AG+MD  
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERH---CVPNLRDINLLLASLCQAGTMD-- 55

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            Q +A    I    + IT NIL+ G+C+   +DKA EL  EM  +  + P+  +Y  +I 
Sbjct: 56  -QAMAIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIK 114

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            +  +D    A     E  +   +   I+ T++ + F  + +   A ++  +M+     K
Sbjct: 115 CYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAK 172

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DIVAWN+++ G+C+ G V EA  ++E +   G  PN  TY +L +G   +    EAL L
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 451 WKEIKER 457
           +K +  R
Sbjct: 233 FKVLSSR 239



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 27/281 (9%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           L D + +  AKPD++ +NV+I    +A R      +LE ++ MG      T+ +L+  + 
Sbjct: 162 LLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFC 221

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG--DDDDDDEVFEKLLPNSIN 197
             G+L  A  + + +            E ++  +++   G    D  +  FE      + 
Sbjct: 222 KSGNLSEALQLFKVLSSRDHHA-----EPNVVTFNALISGLCKADRLEHAFEL-----VK 271

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                 L   TF      YTTLM G   +GR S+  R+   M R+  N   P  VTYTT+
Sbjct: 272 QMKARDLRADTFT-----YTTLMDGLCKQGRTSEVSRVFEEMLREGCN---PSVVTYTTL 323

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           V A  KAGS+  A+QV+  M   G+P +  TY +LL+G  +  ++  A E   ++  + +
Sbjct: 324 VHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRE-R 382

Query: 318 IEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAP 355
             P  V Y+ L+ G     L+D+   A+ ++ EM  R +AP
Sbjct: 383 CPPCAVVYSALVRGCCKAALVDE---AVKYYVEMLDRRLAP 420



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 124/282 (43%), Gaps = 25/282 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARAS-RKH 110
            +KPD  A+N +++     G+ ++  ++ + +   G  P+ +TY  +I   C   +  + 
Sbjct: 170 SAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEA 229

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIREL 168
           L +F +    +      + TF +L++       LE A  +V+ M  R+ R D       +
Sbjct: 230 LQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLM 289

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           D        +G   +   VFE++L    NPS                YTTL+  +   G 
Sbjct: 290 D----GLCKQGRTSEVSRVFEEMLREGCNPSVVT-------------YTTLVHAHCKAGS 332

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           + D  +++ +M  +      PD  TYT ++  L + G +  A +   ++ R   P   + 
Sbjct: 333 LQDAQQVIRSMVAK---GIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVV 389

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           Y+ L++G C+   +D+A +   EM D  ++ PD  +  +L++
Sbjct: 390 YSALVRGCCKAALVDEAVKYYVEMLDR-RLAPDPATCKLLVE 430



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 39/273 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G +P+   ++T++     SG+    E+++LF V+  R    ++P++V+        
Sbjct: 201 LVSMGCVPNAVTYTTLIDGFCKSGNLS--EALQLFKVLSSR-DHHAEPNVVT-------- 249

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA+++      + +   +L  QM     + D  TY  ++    +  R   +  V E +L
Sbjct: 250 FNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEML 309

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    + T+ +LV A+   G L+ A+ ++++M      V K I   D+  Y+   EG 
Sbjct: 310 REGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSM------VAKGIPP-DVTTYTVLLEGL 362

Query: 181 DDDD-----DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            ++       E FEK+L     P +              +Y+ L++G      V + V+ 
Sbjct: 363 FENGKVRTATEFFEKILRERCPPCAV-------------VYSALVRGCCKAALVDEAVKY 409

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              M    D    PD  T   +V  L K G  D
Sbjct: 410 YVEML---DRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/467 (22%), Positives = 203/467 (43%), Gaps = 54/467 (11%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  +Y  ++N+ A  G     L+LFD+M E G  PDV  YN++I    +         +
Sbjct: 182 PDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEI 241

Query: 116 LERILEM-GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            ER+L+   +   + ++  ++      G  + +  I   M++  R         DL  YS
Sbjct: 242 WERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ-------DLYTYS 294

Query: 175 S-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +        G+ D    V++++  N +             +P+  +Y T++ GY+  GR+
Sbjct: 295 TLIHGLCGSGNLDGATRVYKEMAENGV-------------SPDVVVYNTMLNGYLRAGRI 341

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
            + + +   M ++         V+Y  ++  L +   +D A  +   +      A+ +TY
Sbjct: 342 EECLELWKVMEKEGCRTV----VSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTY 397

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL---IDDSAGALTFFN 346
            +L+ G C+   ++KA  +L E A++ + + D  +Y+ +I+G      +D+ AG L   +
Sbjct: 398 GVLVHGLCKNGYLNKALSILEE-AENGRGDLDTFAYSSMINGLCREGRLDEVAGVL---D 453

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +M   G  P       ++  F  +S+ + A + F  M+        +V +N L+ G  + 
Sbjct: 454 QMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPT-VVTYNTLINGLSKA 512

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466
               EA  +++ M   G+ PN+ TY  L NG+   +K   AL LW      C+  ++G  
Sbjct: 513 ERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW------CQALEKG-- 564

Query: 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
                    KPD ++ + +      +     AL++ + M++    PN
Sbjct: 565 --------FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPN 603



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 17/270 (6%)

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           R  E     P   +Y ++++AL+++   D A         +G+  N  TYNIL+K  C++
Sbjct: 103 RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 162

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            Q DKAKELL  M +     PDV SY  LI+        + AL  F+EM  RG+ P    
Sbjct: 163 KQFDKAKELLNWMWEQG-FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 221

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+  F        A+++++ +L+ P V  +I ++N+++ G C+ G  +E+  I  RM
Sbjct: 222 YNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 281

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           K+N    ++ TY +L +G+  +     A  ++KE+ E       GV+          PD 
Sbjct: 282 KKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN------GVS----------PDV 325

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHG 509
            + + + +  +RA    + LE+   ME+ G
Sbjct: 326 VVYNTMLNGYLRAGRIEECLELWKVMEKEG 355



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 206/483 (42%), Gaps = 56/483 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRK-------------FSD 47
           M   G+ P V ++ T+++ LA +G     +++KLFD + +R                F  
Sbjct: 175 MWEQGFSPDVFSYGTLINSLAKNGYMS--DALKLFDEMPERGVTPDVACYNILIDGFFKK 232

Query: 48  PDIVSDSK------------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
            DI++ S+            P+  +YN ++N     GK  +  +++ +M +     D+ T
Sbjct: 233 GDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYT 292

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM- 154
           Y+ +I     +        V + + E G++  +  + +++  Y+  G +E    + + M 
Sbjct: 293 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVME 352

Query: 155 REGRRDVCK---IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           +EG R V     +IR L       EN    D+   ++E LLP             K    
Sbjct: 353 KEGCRTVVSYNILIRGL------FEN-AKVDEAISIWE-LLPE------------KDCCA 392

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           +S  Y  L+ G    G ++   + L  +   E+     D   Y+++++ L + G +D   
Sbjct: 393 DSMTYGVLVHGLCKNGYLN---KALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVA 449

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            VL +MT+ G   N    N ++ G+ +  +++ A      M       P VV+YN LI+G
Sbjct: 450 GVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCF-PTVVTYNTLING 508

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
               +  + A     EM  +G  P  I+Y+ LM       +  +A  ++ + L +   K 
Sbjct: 509 LSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL-EKGFKP 567

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D+   N+++ G C  G VE+A ++   MK+    PN+ T+ +L  G    R    A  +W
Sbjct: 568 DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIW 627

Query: 452 KEI 454
             I
Sbjct: 628 DHI 630



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 169/380 (44%), Gaps = 45/380 (11%)

Query: 12  AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
            +ST++  L  SG+ DG             RV K    + VS   PD   YN +LN    
Sbjct: 292 TYSTLIHGLCGSGNLDGAT-----------RVYKEMAENGVS---PDVVVYNTMLNGYLR 337

Query: 71  LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
            G+ ++ L+L+  M + G +  V++YN++I+     ++    + + E + E        T
Sbjct: 338 AGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMT 396

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDDD 185
           +  LV      G L  A +I++    GR D       LD   YSS       EG  D+  
Sbjct: 397 YGVLVHGLCKNGYLNKALSILEEAENGRGD-------LDTFAYSSMINGLCREGRLDEVA 449

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
            V +++  +   P             N  +   ++ G++   ++ D +R  G M  +   
Sbjct: 450 GVLDQMTKHGCKP-------------NPHVCNAVINGFVRASKLEDALRFFGNMVSK--- 493

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              P  VTY T+++ L KA     A  ++ EM   G   N ITY++L+ G CQ  ++D A
Sbjct: 494 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMA 553

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
             L  + A +   +PDV  +NI+I G         AL  ++EM+ R   P  +++ TLM+
Sbjct: 554 LNLWCQ-ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLME 612

Query: 366 AFALSSQPKLANKVFDEMLR 385
            F      + A+K++D +L+
Sbjct: 613 GFYKVRDFERASKIWDHILQ 632



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 109/466 (23%), Positives = 195/466 (41%), Gaps = 65/466 (13%)

Query: 37  VVVKRVRKFSDPDIVSD----------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
            V+K   K S PD   D           +P   +YN++LNA     K  +    F     
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 142

Query: 87  FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
            G  P++ TYN++IK+  R  +      +L  + E G +  + ++ +L+ +    G +  
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSD 202

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206
           A  +   M E  R V   +   ++       +GD  +  E++E+LL             P
Sbjct: 203 ALKLFDEMPE--RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKG-----------P 249

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
             + PN   Y  ++ G    G+  ++  +   M++ E      D  TY+T++  L  +G+
Sbjct: 250 SVY-PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ---DLYTYSTLIHGLCGSGN 305

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A +V  EM   GV  + + YN +L GY +  +I++  EL + M  +      VVSYN
Sbjct: 306 LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC--RTVVSYN 363

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           ILI G         A++ +  +  +      ++Y  L+     +     A  + +E   +
Sbjct: 364 ILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA-EN 422

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE--------------NGF-------- 424
            R  +D  A++ ++ G CR G ++E   ++++M +              NGF        
Sbjct: 423 GRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLED 482

Query: 425 -------------YPNVATYGSLANGISLARKPGEALLLWKEIKER 457
                        +P V TY +L NG+S A +  EA  L KE+  +
Sbjct: 483 ALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHK 528



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 192/465 (41%), Gaps = 49/465 (10%)

Query: 63  AVLNACANLGKPKKFLQLFDQMHE-FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
            V+ A A    P + L +F +MHE FG +P + +YN ++     +++             
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 142

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCK---IIRELDLEDYSSE 176
           MG++  + T+  L+         + A+ ++  M E     DV     +I  L    Y S 
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMS- 201

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                 D  ++F+++    +              P+   Y  L+ G+  +G + +   + 
Sbjct: 202 ------DALKLFDEMPERGV-------------TPDVACYNILIDGFFKKGDILNASEIW 242

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
              R  +  + +P+  +Y  +++ L K G  D + ++   M +     +  TY+ L+ G 
Sbjct: 243 E--RLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGL 300

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
           C    +D A  + +EMA++  + PDVV YN +++G++        L  +  M   G   T
Sbjct: 301 CGSGNLDGATRVYKEMAENG-VSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG-CRT 358

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
            +SY  L++    +++   A  ++ E+L +     D + + +LV G C+ G + +A  I+
Sbjct: 359 VVSYNILIRGLFENAKVDEAISIW-ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 417

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGE-ALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           E  +      +   Y S+ NG+    +  E A +L +  K  C                 
Sbjct: 418 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGC----------------- 460

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           KP+  + +A+ +  VRA+    AL     M   G  P    Y  +
Sbjct: 461 KPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTL 505


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 204/470 (43%), Gaps = 77/470 (16%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++    +   +K L +F ++ E G  P V+TY  +I +  +  +    + V + + 
Sbjct: 437 YHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMK 496

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
            +GI   M T+  L+  +                             L L+D++      
Sbjct: 497 SVGIKHNMKTYSMLINGF-----------------------------LKLKDWT------ 521

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   VFE ++ + + P             +  +Y  ++K +   G +   + M+  M+
Sbjct: 522 --NAFAVFEDVIKDGLKP-------------DVVLYNNIIKAFCGMGNMDRAIHMVKEMQ 566

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++      P   T+  ++    +AG M RA ++   M R G      T+N L+ G  ++ 
Sbjct: 567 KER---CRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKR 623

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++KA E+L EMA  A + PD  +Y  ++ G+  + D+  A  +F +MR  G+     +Y
Sbjct: 624 KMEKAVEILDEMA-LAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTY 682

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S + + A  V  EM    ++  +   +N+L++G+ R G + EA  ++++M 
Sbjct: 683 EALLKACCKSGRMQSALAVTREM-NAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMN 741

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G  P++ TY S  N      K G+ L   K ++   E++  GV          KP+ +
Sbjct: 742 QEGVQPDIHTYTSFINACC---KAGDMLRATKTME---EMEAAGV----------KPNVK 785

Query: 481 LLDALADICVRAAFFRKALEIVACMEE---HGIPPNKTKYKKIYVEMHSR 527
               L      A+   KAL   +C EE    G+ P+K  Y  +   + SR
Sbjct: 786 TYTTLIHGWANASLPEKAL---SCFEELKLAGLKPDKAVYHCLMTSLLSR 832



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 165/384 (42%), Gaps = 39/384 (10%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y  ++N    +GK  K L++   M   G K ++ TY+++I    +         V
Sbjct: 467 PSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAV 526

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-----RDVCKIIRELDL 170
            E +++ G+   +  + +++ A+ G G+++ A  +V+ M++ R     R    II     
Sbjct: 527 FEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPII----- 581

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEP------PLLPK----------------T 208
             +     G+     E+F+ +  +   P+          L+ K                 
Sbjct: 582 --HGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAG 639

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +P+   YTT+M GY   G   DT +      +  +     D  TY  ++ A  K+G M 
Sbjct: 640 VSPDEHTYTTIMHGYAALG---DTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQ 696

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  V  EM    +P N   YNIL+ G+ ++  I +A +L+++M  +  ++PD+ +Y   
Sbjct: 697 SALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEG-VQPDIHTYTSF 755

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+      D   A     EM A G+ P   +YTTL+  +A +S P+ A   F+E L+   
Sbjct: 756 INACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEE-LKLAG 814

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEA 412
           +K D   ++ L+        V EA
Sbjct: 815 LKPDKAVYHCLMTSLLSRATVAEA 838



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 108/489 (22%), Positives = 201/489 (41%), Gaps = 64/489 (13%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           V D++P+   + AV++A   + KP +         EFG         +M+   AR    H
Sbjct: 271 VLDTQPEN--WQAVVSAFERIKKPSR--------REFG---------LMVGYYARRGDMH 311

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
                 E +   GI      + SL+ AY    D+E A + V+ M E   ++  +   + +
Sbjct: 312 RARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVV 371

Query: 171 EDYSSENEGDDDDDDEVFEK-----------LLPNSINPSSEPPLLPKTFAPNSR----- 214
             ++    G+ +  D  F+K           +  N I    +   + +  A         
Sbjct: 372 GGFA--KFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEG 429

Query: 215 ------IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
                 IY T+M GY     + +  + L   +R ++    P  +TY  +++   K G + 
Sbjct: 430 IDAPLDIYHTMMDGYT---MIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVS 486

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A +V   M  +G+  N  TY++L+ G+ +      A  +  ++  D  ++PDVV YN +
Sbjct: 487 KALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDG-LKPDVVLYNNI 545

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I  F  + +   A+    EM+     PT  ++  ++  FA + + + A ++FD M R   
Sbjct: 546 IKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGC 605

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +   +  +N LV G      +E+A  I++ M   G  P+  TY ++ +G +     G+A 
Sbjct: 606 IPT-VHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAF 664

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
             + ++      + EG          L+ D    +AL   C ++   + AL +   M   
Sbjct: 665 EYFTKM------RNEG----------LQLDVFTYEALLKACCKSGRMQSALAVTREMNAQ 708

Query: 509 GIPPNKTKY 517
            IP N   Y
Sbjct: 709 KIPRNTFVY 717



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 143/343 (41%), Gaps = 31/343 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPD----IVSD--- 53
           ML +G+L  +K W+   +       DG    V L++ ++K      + D    +V +   
Sbjct: 509 MLINGFLK-LKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQK 567

Query: 54  --SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
              +P +  +  +++  A  G+ ++ L++FD M   G  P V T+N ++       +   
Sbjct: 568 ERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEK 627

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDL 170
            V +L+ +   G++    T+ +++  Y   GD   A      MR EG         +LD+
Sbjct: 628 AVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEG--------LQLDV 679

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             Y +  +             +   +N    P         N+ +Y  L+ G+   G + 
Sbjct: 680 FTYEALLKACCKSGRMQSALAVTREMNAQKIP--------RNTFVYNILIDGWARRGDIW 731

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +   ++  M ++      PD  TYT+ ++A  KAG M RA + + EM   GV  N  TY 
Sbjct: 732 EAADLMQQMNQE---GVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYT 788

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            L+ G+      +KA     E+   A ++PD   Y+ L+   +
Sbjct: 789 TLIHGWANASLPEKALSCFEEL-KLAGLKPDKAVYHCLMTSLL 830



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 107/276 (38%), Gaps = 43/276 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M RSG +P V  ++ +V         G VE  K+   V     +  D   ++   PD   
Sbjct: 600 MRRSGCIPTVHTFNALVL--------GLVEKRKMEKAV-----EILDEMALAGVSPDEHT 646

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++  A LG   K  + F +M   G + DV TY  ++K C ++ R    + V   + 
Sbjct: 647 YTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMN 706

Query: 121 EMGITLCMTTFQSLVAAYVGFGDL-EIAETIVQAMREGRRDVCKIIRELDLEDYSSE--- 176
              I      +  L+  +   GD+ E A+ + Q  +EG +         D+  Y+S    
Sbjct: 707 AQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQP--------DIHTYTSFINA 758

Query: 177 --NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               GD     +  E++    +              PN + YTTL+ G+ N    S   +
Sbjct: 759 CCKAGDMLRATKTMEEMEAAGVK-------------PNVKTYTTLIHGWAN---ASLPEK 802

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
            L      +     PD   Y  ++++L+   ++  A
Sbjct: 803 ALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEA 838


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/498 (22%), Positives = 208/498 (41%), Gaps = 41/498 (8%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQM--HEFGAKPDVLTYNVMIKLCARAS 107
           + + ++PDT A+N  + AC   G   + L +  +M   E    PD  +YNV+I    R+ 
Sbjct: 150 VAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSG 209

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
           +    + V + +++ G+     T+ +++  +V  GDLE    +   M +  R    +   
Sbjct: 210 KGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYN 269

Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           + L        G  D+   + +++   S        +LP  F      Y+ L  G     
Sbjct: 270 VLLSGLC--RAGRMDETRALMDEMTSYS--------MLPDGFT-----YSILFDGLT--- 311

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R  D+  ML                T + +++ L K G + +A QVL  +   G+     
Sbjct: 312 RTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTA 371

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            YN L+ GYCQ   +  A  +  +M     I PD ++YN LI+G   ++    A     E
Sbjct: 372 IYNTLINGYCQVRDLQGAFSIFEQM-KSRHIRPDHITYNALINGLCKMEMITEAEDLVME 430

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M   G+ P+  ++ TL+ A+  + Q +    V  +M +D  +K +++++  +V+ +C+ G
Sbjct: 431 MEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDM-QDKGIKSNVISFGSVVKAFCKNG 489

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC--------E 459
            + EA  I++ M      PN   Y S+ +    +    +A LL +++K            
Sbjct: 490 KIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYN 549

Query: 460 VKKEGVNADSDLPPP-----------LKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
           +  +G+  +S +              L+PD    + +   C       +ALE++  M ++
Sbjct: 550 LLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKY 609

Query: 509 GIPPNKTKYKKIYVEMHS 526
            I P    Y  +   + S
Sbjct: 610 DIRPTLRTYHPLLSALGS 627



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 22/132 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVKRVRKFSD 47
           M+    +P+ + +++++     SG               G   S+  +++++K + K S 
Sbjct: 501 MIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ 560

Query: 48  PDIVSDS---------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
            D   +          +PD  +YN +++AC N G   + L+L  +MH++  +P + TY+ 
Sbjct: 561 IDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHP 620

Query: 99  MIKLCARASRKH 110
           ++     A R H
Sbjct: 621 LLSALGSAGRVH 632


>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
          Length = 1520

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 164/378 (43%), Gaps = 54/378 (14%)

Query: 61   YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
            Y+A+L+AC  +  P   L+  ++  +FG  PD+ TY ++IK  + +        +   + 
Sbjct: 910  YSAILDACIRINSPDHLLESVNKYKKFGFHPDLQTYGLLIKFFSSSDNVMECFHLWNEMT 969

Query: 121  EM-GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
             + G  L   T+  +  A V    L+ A ++++ M++                       
Sbjct: 970  SLYGYELNEVTYGCMFDALVSNNMLDEALSLLKDMKKN---------------------- 1007

Query: 180  DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                           PN+ IY+TL+KG+   G+     + L   
Sbjct: 1008 ---------------------------SNIKPNTIIYSTLIKGF---GQTKQLNKALNIY 1037

Query: 240  RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                D    P+ +TY +++ A  + G M++A  +L +M    +  + IT++ ++KGYC Q
Sbjct: 1038 LTMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQ 1097

Query: 300  LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
              +D++ +LLR M++   I+PD + YN L+DG +           ++EM+  GIAP+  +
Sbjct: 1098 SNMDRSLQLLRAMSERG-IKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQENGIAPSNFT 1156

Query: 360  YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
             T L+K +    Q   A ++ DE+ R   ++ +   +  L+      G  + A  +   M
Sbjct: 1157 LTILIKMYGRLGQLDKAFQLMDELPRKYNIQTNTHVYTCLMSACITNGKYKMALDVFNCM 1216

Query: 420  KENGFYPNVATYGSLANG 437
              NG  P+  TY ++  G
Sbjct: 1217 NGNGIVPDSKTYETIIFG 1234



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 140/314 (44%), Gaps = 22/314 (7%)

Query: 228  RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI-GVPANR 286
            R++    +L ++ + +    HPD  TY  ++     + ++     +  EMT + G   N 
Sbjct: 919  RINSPDHLLESVNKYKKFGFHPDLQTYGLLIKFFSSSDNVMECFHLWNEMTSLYGYELNE 978

Query: 287  ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            +TY  +         +D+A  LL++M  ++ I+P+ + Y+ LI GF        AL  + 
Sbjct: 979  VTYGCMFDALVSNNMLDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYL 1038

Query: 347  EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
             M   G+ P  I+Y +++ A A       A  + ++ML +  ++ D++ ++ +++GYC  
Sbjct: 1039 TMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDMLNN-NIEPDLITFSTVIKGYCVQ 1097

Query: 407  GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE---------- 456
              ++ + +++  M E G  P+   Y SL +G   + +P     LW E++E          
Sbjct: 1098 SNMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQENGIAPSNFTL 1157

Query: 457  --------RCEVKKEGVNADSDLPPP--LKPDEELLDALADICVRAAFFRKALEIVACME 506
                    R     +      +LP    ++ +  +   L   C+    ++ AL++  CM 
Sbjct: 1158 TILIKMYGRLGQLDKAFQLMDELPRKYNIQTNTHVYTCLMSACITNGKYKMALDVFNCMN 1217

Query: 507  EHGIPPNKTKYKKI 520
             +GI P+   Y+ I
Sbjct: 1218 GNGIVPDSKTYETI 1231



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 109/283 (38%), Gaps = 55/283 (19%)

Query: 52   SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
            S+ KP+T  Y+ ++       +  K L ++  M + G  P+ +TYN +I  CAR    + 
Sbjct: 1008 SNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVGDMNK 1067

Query: 112  LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
               +LE +L   I   + TF +++  Y    +++ +  +++AM E               
Sbjct: 1068 AANLLEDMLNNNIEPDLITFSTVIKGYCVQSNMDRSLQLLRAMSE--------------- 1112

Query: 172  DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                               +   P+  +Y +L+ G +  GR   
Sbjct: 1113 -----------------------------------RGIKPDGILYNSLLDGCVKSGRPWL 1137

Query: 232  TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYN 290
              ++   M   ++N   P + T T ++    + G +D+A Q++ E+ R   +  N   Y 
Sbjct: 1138 CQQLWDEM---QENGIAPSNFTLTILIKMYGRLGQLDKAFQLMDELPRKYNIQTNTHVYT 1194

Query: 291  ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             L+       +   A ++   M  +  I PD  +Y  +I G I
Sbjct: 1195 CLMSACITNGKYKMALDVFNCMNGNG-IVPDSKTYETIIFGAI 1236


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 192/459 (41%), Gaps = 70/459 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
           M   G LP+   ++TV++   A G+ G V E++ LFD + K           +   P+  
Sbjct: 341 MASKGLLPNAFTYNTVMT---AYGNVGKVDEALALFDQMKK-----------TGFVPNVN 386

Query: 60  AYNAVLNACANLGKPKKF---LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
            YN VL     LGK  +F   L++  +M   G  P+ +T+N M+ +C +   +  +  VL
Sbjct: 387 TYNLVLGM---LGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 443

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           E +   G+ L   T+ +L+AAY   G    A  +   M       C       L   S  
Sbjct: 444 EGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLS-- 501

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR-- 234
            +GD      +  K             +  K F PN + Y+ L++ Y   G V+      
Sbjct: 502 RQGDWSTAQSIVSK-------------MRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIE 548

Query: 235 -------------------------------MLGAMRRQEDNASHPDHVTYTTVVSALVK 263
                                          M  A +  +    +PD V + +++S   K
Sbjct: 549 NEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAK 608

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G   +A +V   + R G+  + ITYN L+  Y +  +  +A+++L ++     ++PDVV
Sbjct: 609 NGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVV 668

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           SYN +I+GF        A    +EM A G+AP  ++Y TL+  ++       A +V   M
Sbjct: 669 SYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYM 728

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           ++     +++  +  +VE YCR    EEA+  +  + E 
Sbjct: 729 VQHGLKPMELT-YRRVVESYCRAKRFEEARGFLSEVSET 766



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 178/438 (40%), Gaps = 67/438 (15%)

Query: 13  WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVS----------DSKPDTAAYN 62
           W   ++ L  +G +G  ++  L ++VV+ + +    D V            S+ D  AY 
Sbjct: 120 WEWALALLRWAGKEGAADASAL-EMVVRALGREGQHDAVCALLDETPLPPGSRLDVRAYT 178

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH-LLVFVLERILE 121
            VL+A +  G+ ++ L+LF ++   G  P ++TYNV++ +  R  R    +V +L+ +  
Sbjct: 179 TVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRA 238

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+                  D   A T++ A        C+              +G  
Sbjct: 239 AGVE----------------PDGFTASTVIAA-------CCR--------------DGLV 261

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
           D+    FE              L  +  AP    Y  L++ +   G  ++ +R+LG M  
Sbjct: 262 DEAVAFFED-------------LKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEM-- 306

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
            E N   PD VTY  +     +AG  + A + L  M   G+  N  TYN ++  Y    +
Sbjct: 307 -EQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGK 365

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +D+A  L  +M     + P+V +YN+++            L    EM   G  P ++++ 
Sbjct: 366 VDEALALFDQMKKTGFV-PNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWN 424

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
           T++             +V + M R   V++    +N L+  Y R G    A ++   M  
Sbjct: 425 TMLAVCGKRGMEDYVTRVLEGM-RSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS 483

Query: 422 NGFYPNVATYGSLANGIS 439
            GF P + TY +L N +S
Sbjct: 484 AGFTPCITTYNALLNVLS 501



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 133/281 (47%), Gaps = 29/281 (10%)

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-IDK 304
            S  D   YTTV+ AL +AG  +RA ++ AE+ R GV    +TYN++L  Y +  +   +
Sbjct: 169 GSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPR 228

Query: 305 AKELLREMADDAKIEPDVVSYNILI-----DGFILIDDSAGALTFFNEMRARGIAPTKIS 359
              LL EM   A +EPD  + + +I     DG  L+D+   A+ FF +++ARG AP  ++
Sbjct: 229 IVALLDEM-RAAGVEPDGFTASTVIAACCRDG--LVDE---AVAFFEDLKARGHAPCVVT 282

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L++ F  +     A +V  EM ++   + D V +N L   Y R G  EEA R ++ M
Sbjct: 283 YNALLQVFGKAGNYTEALRVLGEMEQNG-CQPDAVTYNELAGTYARAGFFEEAARCLDTM 341

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
              G  PN  TY ++        K  EAL L+ ++K+   V                P+ 
Sbjct: 342 ASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFV----------------PNV 385

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
              + +  +  + + F   LE++  M   G  PN+  +  +
Sbjct: 386 NTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTM 426



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 21/268 (7%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           T+++ AL  +G  + A  +L    + G  A+     ++++   ++ Q D    LL E   
Sbjct: 108 TSLLKALELSGHWEWALALLRWAGKEGA-ADASALEMVVRALGREGQHDAVCALLDETPL 166

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL--SSQ 372
                 DV +Y  ++           AL  F E+R +G+APT ++Y  ++  +     S 
Sbjct: 167 PPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSW 226

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
           P++   + DEM R   V+ D    + ++   CR GLV+EA    E +K  G  P V TY 
Sbjct: 227 PRIV-ALLDEM-RAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYN 284

Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
           +L      A    EAL +  E+++                   +PD    + LA    RA
Sbjct: 285 ALLQVFGKAGNYTEALRVLGEMEQN----------------GCQPDAVTYNELAGTYARA 328

Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
            FF +A   +  M   G+ PN   Y  +
Sbjct: 329 GFFEEAARCLDTMASKGLLPNAFTYNTV 356


>gi|357127701|ref|XP_003565517.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Brachypodium distachyon]
          Length = 579

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 171/363 (47%), Gaps = 22/363 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P  + +N ++      G+P++  ++FD M  +  +P++ TYN+++K      R      
Sbjct: 130 RPTVSTFNTLIKGFGIAGRPEESQRIFDLMTAW-VRPNLTTYNILVKAWCDQRRMEQAWA 188

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET-IVQAMREGRRDVCKIIRELDLEDY 173
           V+ R+    +   + T+ +L +AY    +   AE  +V  M   R    +    + +  Y
Sbjct: 189 VVGRMRPAAVEPDVVTYNTLASAYAKNDETWRAEELVVVEMARARLRTSERTWGIIVGGY 248

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               EG  ++      ++    +              PN  ++ TL+KG+++    +   
Sbjct: 249 C--REGRLEEALRCVRQMKDAGV-------------GPNVIVFNTLLKGFLDANDAAAAA 293

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +LG M   E     PD VTY+  ++AL   G M R  +V   M   G+  +   Y+IL 
Sbjct: 294 DVLGLM---EQFGIKPDIVTYSHQLNALSSLGHMARCAKVFDRMLEAGIEPDPQVYSILA 350

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           KGY +  Q  KA+ELL++M     + P+VV++  +I G+  + D   A   +++MR  G+
Sbjct: 351 KGYVRAQQPGKAEELLQQMGR-LGVRPNVVTFTTVISGWCSVADMDNATRVYDKMRGAGV 409

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P   ++ TL+  ++   QP  A KV  +M++D  V+     ++++ + +  +G+VE A 
Sbjct: 410 RPNLRTFETLIWGYSEQKQPWKAEKVL-QMMKDAGVRPKQSTYSLVADAWKAVGIVENAN 468

Query: 414 RII 416
           R +
Sbjct: 469 RAL 471



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 168/366 (45%), Gaps = 20/366 (5%)

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQ 132
           KP +   +F Q+   G +P ++TY  ++ L         +  +L  I   G+      F 
Sbjct: 41  KPHQAHAVFAQLAGEGHRPSLVTYTTLLSLLTSQRAFERIPALLADIEAAGLRPDPIFFN 100

Query: 133 SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLL 192
           +L+ A+V  G +  A ++   M          +   +         G  ++   +F+   
Sbjct: 101 ALINAFVEAGRMGEATSVFWKMSRHHPGCRPTVSTFNTLIKGFGIAGRPEESQRIFD--- 157

Query: 193 PNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252
                      L+     PN   Y  L+K + ++ R+     ++G MR     A  PD V
Sbjct: 158 -----------LMTAWVRPNLTTYNILVKAWCDQRRMEQAWAVVGRMR---PAAVEPDVV 203

Query: 253 TYTTVVSALVKAGSMDRARQ-VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           TY T+ SA  K     RA + V+ EM R  +  +  T+ I++ GYC++ ++++A   +R+
Sbjct: 204 TYNTLASAYAKNDETWRAEELVVVEMARARLRTSERTWGIIVGGYCREGRLEEALRCVRQ 263

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M  DA + P+V+ +N L+ GF+  +D+A A      M   GI P  ++Y+  + A +   
Sbjct: 264 M-KDAGVGPNVIVFNTLLKGFLDANDAAAAADVLGLMEQFGIKPDIVTYSHQLNALSSLG 322

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
                 KVFD ML +  ++ D   +++L +GY R     +A+ ++++M   G  PNV T+
Sbjct: 323 HMARCAKVFDRML-EAGIEPDPQVYSILAKGYVRAQQPGKAEELLQQMGRLGVRPNVVTF 381

Query: 432 GSLANG 437
            ++ +G
Sbjct: 382 TTVISG 387



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 170/384 (44%), Gaps = 22/384 (5%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQM--HEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +PD   +NA++NA    G+  +   +F +M  H  G +P V T+N +IK    A R    
Sbjct: 93  RPDPIFFNALINAFVEAGRMGEATSVFWKMSRHHPGCRPTVSTFNTLIKGFGIAGRPEES 152

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             + + ++   +   +TT+  LV A+     +E A  +V  MR    +   +        
Sbjct: 153 QRIFD-LMTAWVRPNLTTYNILVKAWCDQRRMEQAWAVVGRMRPAAVEPDVVTYNTLASA 211

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           Y+  +E    ++  V E              +       + R +  ++ GY  EGR+ + 
Sbjct: 212 YAKNDETWRAEELVVVE--------------MARARLRTSERTWGIIVGGYCREGRLEEA 257

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +R    +R+ +D    P+ + + T++   + A     A  VL  M + G+  + +TY+  
Sbjct: 258 LR---CVRQMKDAGVGPNVIVFNTLLKGFLDANDAAAAADVLGLMEQFGIKPDIVTYSHQ 314

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L        + +  ++   M + A IEPD   Y+IL  G++       A     +M   G
Sbjct: 315 LNALSSLGHMARCAKVFDRMLE-AGIEPDPQVYSILAKGYVRAQQPGKAEELLQQMGRLG 373

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  +++TT++  +   +    A +V+D+M R   V+ ++  +  L+ GY       +A
Sbjct: 374 VRPNVVTFTTVISGWCSVADMDNATRVYDKM-RGAGVRPNLRTFETLIWGYSEQKQPWKA 432

Query: 413 KRIIERMKENGFYPNVATYGSLAN 436
           +++++ MK+ G  P  +TY  +A+
Sbjct: 433 EKVLQMMKDAGVRPKQSTYSLVAD 456



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 135/294 (45%), Gaps = 25/294 (8%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRI--GVPANRITYNILLKGYCQQLQIDKAK 306
           PD + +  +++A V+AG M  A  V  +M+R   G      T+N L+KG+    + ++++
Sbjct: 94  PDPIFFNALINAFVEAGRMGEATSVFWKMSRHHPGCRPTVSTFNTLIKGFGIAGRPEESQ 153

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
            +   M   A + P++ +YNIL+  +        A      MR   + P  ++Y TL  A
Sbjct: 154 RIFDLMT--AWVRPNLTTYNILVKAWCDQRRMEQAWAVVGRMRPAAVEPDVVTYNTLASA 211

Query: 367 FALSSQPKLANK-VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           +A + +   A + V  EM R  R++     W ++V GYCR G +EEA R + +MK+ G  
Sbjct: 212 YAKNDETWRAEELVVVEMAR-ARLRTSERTWGIIVGGYCREGRLEEALRCVRQMKDAGVG 270

Query: 426 PNVATYGSLANGI---SLARKPGEALLLWKE--IKERCEVKKEGVNA------------- 467
           PNV  + +L  G    + A    + L L ++  IK         +NA             
Sbjct: 271 PNVIVFNTLLKGFLDANDAAAAADVLGLMEQFGIKPDIVTYSHQLNALSSLGHMARCAKV 330

Query: 468 -DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            D  L   ++PD ++   LA   VRA    KA E++  M   G+ PN   +  +
Sbjct: 331 FDRMLEAGIEPDPQVYSILAKGYVRAQQPGKAEELLQQMGRLGVRPNVVTFTTV 384



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 161/381 (42%), Gaps = 56/381 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P V  ++T++     +G   P ES ++FD++   VR            P+   YN +
Sbjct: 128 GCRPTVSTFNTLIKGFGIAGR--PEESQRIFDLMTAWVR------------PNLTTYNIL 173

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR---ASRKHLLVFVLERILE 121
           + A  +  + ++   +  +M     +PDV+TYN +    A+     R   LV     ++E
Sbjct: 174 VKAWCDQRRMEQAWAVVGRMRPAAVEPDVVTYNTLASAYAKNDETWRAEELV-----VVE 228

Query: 122 MGITLCMT---TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS--- 175
           M      T   T+  +V  Y   G LE A   V+ M++       I+    L+ +     
Sbjct: 229 MARARLRTSERTWGIIVGGYCREGRLEEALRCVRQMKDAGVGPNVIVFNTLLKGFLDAND 288

Query: 176 -----------ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIY 216
                      E  G   D      +L  N+++         K F         P+ ++Y
Sbjct: 289 AAAAADVLGLMEQFGIKPDIVTYSHQL--NALSSLGHMARCAKVFDRMLEAGIEPDPQVY 346

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           + L KGY+   +      +L  M R       P+ VT+TTV+S       MD A +V  +
Sbjct: 347 SILAKGYVRAQQPGKAEELLQQMGRL---GVRPNVVTFTTVISGWCSVADMDNATRVYDK 403

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI--- 333
           M   GV  N  T+  L+ GY +Q Q  KA+++L +M  DA + P   +Y+++ D +    
Sbjct: 404 MRGAGVRPNLRTFETLIWGYSEQKQPWKAEKVL-QMMKDAGVRPKQSTYSLVADAWKAVG 462

Query: 334 LIDDSAGALTFFNEMRARGIA 354
           +++++  AL   ++ R R ++
Sbjct: 463 IVENANRALGSPDDCRRRNVS 483



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 5/187 (2%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           V+ T  + AL+      +A  V A++   G   + +TY  LL     Q   ++   LL +
Sbjct: 27  VSRTREMRALIDEKKPHQAHAVFAQLAGEGHRPSLVTYTTLLSLLTSQRAFERIPALLAD 86

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR--GIAPTKISYTTLMKAFAL 369
           + + A + PD + +N LI+ F+       A + F +M     G  PT  ++ TL+K F +
Sbjct: 87  I-EAAGLRPDPIFFNALINAFVEAGRMGEATSVFWKMSRHHPGCRPTVSTFNTLIKGFGI 145

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           + +P+ + ++FD M     V+ ++  +N+LV+ +C    +E+A  ++ RM+     P+V 
Sbjct: 146 AGRPEESQRIFDLM--TAWVRPNLTTYNILVKAWCDQRRMEQAWAVVGRMRPAAVEPDVV 203

Query: 430 TYGSLAN 436
           TY +LA+
Sbjct: 204 TYNTLAS 210


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 148/310 (47%), Gaps = 23/310 (7%)

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
           T++ +G+    RV +  ++L  M   E  ++ PD V +  ++    KAG +  A ++L  
Sbjct: 143 TSVARGFCKAQRVDEAYQLLLDM--VEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLET 200

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD-DAKIEPDVVSYNILIDGFILI 335
           +  +G   N +TY  L+ G+C+   + +A +L + ++  D   EP+VV++N LI G    
Sbjct: 201 LVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKA 260

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
           D    A     +M+AR +     +YTTLM       +    ++VF+EMLR+      +V 
Sbjct: 261 DRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG-CNPSVVT 319

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI- 454
           +  LV  +C+ G +++A+++I  M   G  P+V TY  L  G+    K   A   +++I 
Sbjct: 320 YTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKIL 379

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           +ERC              PP      +  AL   C +AA   +A++    M +  + P+ 
Sbjct: 380 RERC--------------PPCAV---VYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDP 422

Query: 515 TKYKKIYVEM 524
               K+ VEM
Sbjct: 423 ATC-KLLVEM 431



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 8/247 (3%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   ++ L+ G    GR+ + V     M  +      P+      ++++L +AG MD  
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERH---CVPNLRDINLLLASLCQAGKMD-- 55

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            Q +A    I    + IT NIL+ G+C+   +DKA EL  EM  +  + P+  +Y  +I 
Sbjct: 56  -QAMAIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIK 114

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            +  +D    A     E  +   +   I+ T++ + F  + +   A ++  +M+     K
Sbjct: 115 CYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAK 172

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            DIVAWN+++ G+C+ G V EA  ++E +   G  PN  TY +L +G   +    EAL L
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 451 WKEIKER 457
           +K +  R
Sbjct: 233 FKVLSSR 239



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 27/281 (9%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           L D + +  AKPD++ +NV+I    +A R      +LE ++ MG      T+ +L+  + 
Sbjct: 162 LLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFC 221

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG--DDDDDDEVFEKLLPNSIN 197
             G+L  A  + + +            E ++  +++   G    D  +  FE      + 
Sbjct: 222 KSGNLSEALQLFKVLSSRDHHA-----EPNVVTFNALISGLCKADRLEHAFEL-----VK 271

Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
                 L   TF      YTTLM G   +GR S+  R+   M R+  N   P  VTYTT+
Sbjct: 272 QMKARDLRADTFT-----YTTLMDGLCKQGRTSEVSRVFEEMLREGCN---PSVVTYTTL 323

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
           V A  KAGS+  A+QV+  M   G+P +  TY +LL+G  +  ++  A E   ++  + +
Sbjct: 324 VHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRE-R 382

Query: 318 IEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAP 355
             P  V Y+ L+ G     L+D+   A+ ++ EM  R +AP
Sbjct: 383 CPPCAVVYSALVRGCCKAALVDE---AVKYYVEMLDRRLAP 420



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 123/282 (43%), Gaps = 25/282 (8%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHL 111
            +KPD  A+N +++     G+ ++  ++ + +   G  P+ +TY  +I   C   +    
Sbjct: 170 SAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEA 229

Query: 112 L-VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIREL 168
           L +F +    +      + TF +L++       LE A  +V+ M  R+ R D       +
Sbjct: 230 LQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLM 289

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           D        +G   +   VFE++L    NPS                YTTL+  +   G 
Sbjct: 290 D----GLCKQGRTSEVSRVFEEMLREGCNPSVVT-------------YTTLVHAHCKAGS 332

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           + D  +++ +M  +      PD  TYT ++  L + G +  A +   ++ R   P   + 
Sbjct: 333 LQDAQQVIRSMVAK---GIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVV 389

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           Y+ L++G C+   +D+A +   EM D  ++ PD  +  +L++
Sbjct: 390 YSALVRGCCKAALVDEAVKYYVEMLDR-RLAPDPATCKLLVE 430



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 39/273 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ++  G +P+   ++T++     SG+    E+++LF V+  R    ++P++V+        
Sbjct: 201 LVSMGCVPNAVTYTTLIDGFCKSGNLS--EALQLFKVLSSR-DHHAEPNVVT-------- 249

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +NA+++      + +   +L  QM     + D  TY  ++    +  R   +  V E +L
Sbjct: 250 FNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEML 309

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    + T+ +LV A+   G L+ A+ ++++M      V K I   D+  Y+   EG 
Sbjct: 310 REGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSM------VAKGIPP-DVTTYTVLLEGL 362

Query: 181 DDDD-----DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
            ++       E FEK+L     P +              +Y+ L++G      V + V+ 
Sbjct: 363 FENGKVRTATEFFEKILRERCPPCAV-------------VYSALVRGCCKAALVDEAVKY 409

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
              M    D    PD  T   +V  L K G  D
Sbjct: 410 YVEML---DRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 9/246 (3%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F PN   Y  L+K      +V    ++L  M    +    PD V+YTTV+S++ + G + 
Sbjct: 177 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEM---SNKGCCPDAVSYTTVISSMCEVGLVK 233

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
             R+ LAE     V      YN L+ G C++     A EL+REM +   I P+V+SY+ L
Sbjct: 234 EGRE-LAERFEPVVS----VYNALINGLCKEHDYKGAFELMREMVEKG-ISPNVISYSTL 287

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I+          A +F  +M  RG  P   + ++L+K   L      A  ++++M+R   
Sbjct: 288 INVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFG 347

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           ++ ++VA+N LV+G+C  G + +A  +   M+E G  PN+ TYGSL NG +       A+
Sbjct: 348 LQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAV 407

Query: 449 LLWKEI 454
            +W ++
Sbjct: 408 YIWNKM 413



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/454 (23%), Positives = 195/454 (42%), Gaps = 42/454 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P   +++TV+S +   G             +VK  R+ ++       +P  + 
Sbjct: 207 MSNKGCCPDAVSYTTVISSMCEVG-------------LVKEGRELAE-----RFEPVVSV 248

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N        K   +L  +M E G  P+V++Y+ +I +   + +  L    L ++L
Sbjct: 249 YNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQML 308

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL-EDYSSENEG 179
           + G    + T  SLV      G    A  +   M  G      ++    L + + S   G
Sbjct: 309 KRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSH--G 366

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           +      VF  +    I  S           PN R Y +L+ G+   G +   V +   M
Sbjct: 367 NIVKAVSVFSHM--EEIGCS-----------PNIRTYGSLINGFAKRGSLDGAVYIWNKM 413

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                +   P+ V YT +V AL +      A  ++  M++     +  T+N  +KG C  
Sbjct: 414 L---TSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDA 470

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++D A+++ R+M    +  P++V+YN L+DG    +    A     E+  RG+  +  +
Sbjct: 471 GRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSST 530

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y TL+     +  P +A ++  +M+ D +   D +  NM++  YC+ G  E A ++++ +
Sbjct: 531 YNTLLHGSCNAGLPGIALQLVGKMMVDGK-SPDEITMNMIILAYCKQGKAERAAQMLDLV 589

Query: 420 K--ENGFYPNVATYGSLANGI--SLARKPGEALL 449
                 + P+V +Y ++  G+  S  R+ G  LL
Sbjct: 590 SCGRRKWRPDVISYTNVIWGLCRSNCREDGVILL 623



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 180/411 (43%), Gaps = 41/411 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR----KHL 111
           P    YN VL+      + +    ++  M   G +P+V TYNV++K   + ++    K L
Sbjct: 144 PSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKL 203

Query: 112 LVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
           LV       EM    C     ++ +++++    G           ++EGR    +    +
Sbjct: 204 LV-------EMSNKGCCPDAVSYTTVISSMCEVG----------LVKEGRELAERFEPVV 246

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
            + +        + D    FE +            ++ K  +PN   Y+TL+    N G+
Sbjct: 247 SVYNALINGLCKEHDYKGAFELM----------REMVEKGISPNVISYSTLINVLCNSGQ 296

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRI 287
           +      L  M ++     HP+  T +++V      G+   A  +  +M R  G+  N +
Sbjct: 297 IELAFSFLTQMLKR---GCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVV 353

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
            YN L++G+C    I KA  +   M ++    P++ +Y  LI+GF       GA+  +N+
Sbjct: 354 AYNTLVQGFCSHGNIVKAVSVFSHM-EEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNK 412

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M   G  P  + YT +++A    S+ K A  +  E++        +  +N  ++G C  G
Sbjct: 413 MLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI-EIMSKENCAPSVPTFNAFIKGLCDAG 471

Query: 408 LVEEAKRIIERM-KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            ++ A+++  +M +++   PN+ TY  L +G++ A +  EA  L +EI  R
Sbjct: 472 RLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMR 522



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 186/428 (43%), Gaps = 39/428 (9%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           + +V++    +G  ++ +++F ++ EFG  P V  YN ++      +R  ++  V   + 
Sbjct: 114 FISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMK 173

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    + T+  L+ A      ++ A+ ++  M    +  C      D   Y++     
Sbjct: 174 RDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM--SNKGCCP-----DAVSYTT----- 221

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 V   +    +    E   L + F P   +Y  L+ G   E        +   MR
Sbjct: 222 ------VISSMC--EVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFEL---MR 270

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
              +    P+ ++Y+T+++ L  +G ++ A   L +M + G   N  T + L+KG   + 
Sbjct: 271 EMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRG 330

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
               A +L  +M     ++P+VV+YN L+ GF    +   A++ F+ M   G +P   +Y
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTY 390

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            +L+  FA       A  ++++ML       ++V +  +VE  CR    +EA+ +IE M 
Sbjct: 391 GSLINGFAKRGSLDGAVYIWNKMLTSGCCP-NVVVYTNMVEALCRHSKFKEAESLIEIMS 449

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE--RCEVKKEGVNADSDLPPPLKPD 478
           +    P+V T+ +   G+  A +   A  +++++++  RC             PP +   
Sbjct: 450 KENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRC-------------PPNIVTY 496

Query: 479 EELLDALA 486
            ELLD LA
Sbjct: 497 NELLDGLA 504



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 166/401 (41%), Gaps = 57/401 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKL-FDVVVKRVRKFSDPDIVSDS----- 54
           M+  G  P+V ++ST+++ L  SG       ++L F  + + +++   P+I + S     
Sbjct: 272 MVEKGISPNVISYSTLINVLCNSGQ------IELAFSFLTQMLKRGCHPNIYTLSSLVKG 325

Query: 55  -----------------------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91
                                  +P+  AYN ++    + G   K + +F  M E G  P
Sbjct: 326 CFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSP 385

Query: 92  DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151
           ++ TY  +I   A+       V++  ++L  G    +  + ++V A       + AE+++
Sbjct: 386 NIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI 445

Query: 152 QAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211
           + M   + +    +   +       + G  D  ++VF ++      P            P
Sbjct: 446 EIM--SKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCP------------P 491

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGA--MRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           N   Y  L+ G     R+ +   +     MR  E ++S     TY T++     AG    
Sbjct: 492 NIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS-----TYNTLLHGSCNAGLPGI 546

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA-DDAKIEPDVVSYNIL 328
           A Q++ +M   G   + IT N+++  YC+Q + ++A ++L  ++    K  PDV+SY  +
Sbjct: 547 ALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNV 606

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           I G    +     +     M + GI P+  +++ L+  F L
Sbjct: 607 IWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFIL 647


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 181/448 (40%), Gaps = 68/448 (15%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKH 110
           S + P+   YN ++NA   L           +M E G  PD  TYN +M+ LC    R  
Sbjct: 84  SGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLC----RAG 139

Query: 111 LLVFVLERILEM----GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKI 164
           LL       ++M    G      ++  L+      G ++ A  +   M  G  R  V   
Sbjct: 140 LLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTY 199

Query: 165 IRELD-LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
              LD L       E          E LL   +N         K   PN   Y  L+ G 
Sbjct: 200 TVLLDGLCKVRRVGEA---------EALLGEMVN---------KGVVPNVVTYNALIGGL 241

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
             EGR  D  ++L  M  Q  +   PD  TYT VV  L K G +    +VL E    GV 
Sbjct: 242 CQEGRFDDVTKLLEKMEIQRHS---PDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVA 298

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
              +TYN L+ GYC+   +  A ++L+ M  + ++ P V ++N +I GF        A+ 
Sbjct: 299 LEVLTYNALINGYCKGGDMKAALDVLQLMKRN-RVNPGVQTFNEVIHGFCCGGKVHKAMA 357

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-------------------- 383
           F  +M   G++P  +++ +L+       + K+A ++ D M                    
Sbjct: 358 FLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALC 417

Query: 384 --------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
                         L    +K   V +  LV GYC++G ++ A  ++E+M      P+V 
Sbjct: 418 DEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVH 477

Query: 430 TYGSLANGISLARKPGEALLLWKEIKER 457
           TY +L +G+   ++   A+ L  ++K++
Sbjct: 478 TYNTLIDGLCKVKRLDRAIDLLDKMKKQ 505



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 165/384 (42%), Gaps = 28/384 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P+   YNA++      G+     +L ++M      PD  TY  ++  LC      H    
Sbjct: 229 PNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHG-AK 287

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL   +  G+ L + T+ +L+  Y   GD++ A  ++Q M+  R                
Sbjct: 288 VLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRV--------------- 332

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
             N G    ++ +        ++ +      +     +PN+  + +L+ G  + G     
Sbjct: 333 --NPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIA 390

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           +R+L  M   E+    PD  TY   + AL   G ++ A  + + +   G+ A+ + Y  L
Sbjct: 391 LRLLDLM---EEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSL 447

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + GYCQ   ID A  L+ +MA +    PDV +YN LIDG   +     A+   ++M+ +G
Sbjct: 448 VHGYCQVGDIDSAFGLMEKMASE-NCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQG 506

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           I PT  ++  L+K      +   A K++++M+     K D   + + +      G  +E 
Sbjct: 507 IEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSG-CKPDKQTYTLKISTDWFEGATKEE 565

Query: 413 K--RIIERMKENGFYPNVATYGSL 434
                +  M E G +P+V TY ++
Sbjct: 566 NIDMAVVEMHEAGVFPDVETYNAI 589



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 138/309 (44%), Gaps = 20/309 (6%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            AP++  Y  LM G    G ++    +   M R+    +  D  +YT ++  L  AG +D
Sbjct: 121 LAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRW--GACYDRYSYTILIKGLCAAGRID 178

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A +V A+M+R        TY +LL G C+  ++ +A+ LL EM +   + P+VV+YN L
Sbjct: 179 DACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVV-PNVVTYNAL 237

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G               +M  +  +P   +YT ++       +     KV  E +    
Sbjct: 238 IGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAI-GKG 296

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           V ++++ +N L+ GYC+ G ++ A  +++ MK N   P V T+  + +G     K  +A+
Sbjct: 297 VALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAM 356

Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
               ++            A + L P       L+     +  R    + AL ++  MEE+
Sbjct: 357 AFLTQM------------AGAGLSPNTVTFNSLISGQCSVGER----KIALRLLDLMEEY 400

Query: 509 GIPPNKTKY 517
           G+ P++  Y
Sbjct: 401 GVLPDRQTY 409



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           R++  +   GAM +   + + P+  TY T+++A  K   +  AR  L  M   G+  +  
Sbjct: 70  RLAHLLASFGAMLK---SGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTF 126

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
           TYN L+ G C+   +  A  L  +M        D  SY ILI G         A   F +
Sbjct: 127 TYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAK 186

Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
           M      P   +YT L+       +   A  +  EM+    V  ++V +N L+ G C+ G
Sbjct: 187 MSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVP-NVVTYNALIGGLCQEG 245

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
             ++  +++E+M+     P+  TY  + +G+    K G  
Sbjct: 246 RFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHG 285



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 174/427 (40%), Gaps = 60/427 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLC--ARASRKHLL 112
           P+T  +N++++   ++G+ K  L+L D M E+G  PD  TY + I  LC   +    H L
Sbjct: 369 PNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSL 428

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
              L      GI      + SLV  Y   GD++ A  +++ M     + C      D+  
Sbjct: 429 FSCLPM---KGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMAS---ENCMP----DVHT 478

Query: 173 YSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
           Y++  +G       D   ++ +K+    I P+             +  +  L+K  + + 
Sbjct: 479 YNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPT-------------TCTFNILIKQMLWDK 525

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS-----ALVKAGSMDRARQVLAEMTRIGV 282
           + +D  +M   M     +   PD  TYT  +S        K  ++D A   + EM   GV
Sbjct: 526 KHADAAKMYEQMI---SSGCKPDKQTYTLKISTDWFEGATKEENIDMA---VVEMHEAGV 579

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG-- 340
             +  TYN ++K Y      +KA     +M     I+PD  +Y+IL++     DDS    
Sbjct: 580 FPDVETYNAIIKAYVDAGLKEKAFFAHVKML-SVPIDPDCTTYSILLNYMCNKDDSDAFD 638

Query: 341 ------------ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDP 387
                           F +M     AP   +Y  L++   L +Q +L    +  + ++  
Sbjct: 639 NEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLR--GLCNQCRLEEVEWLLLKMQGN 696

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            + +D    + L+  YC + +  EA      M    F P + +   L +G+  +   G A
Sbjct: 697 SILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDSGDHGMA 756

Query: 448 LLLWKEI 454
           + ++ ++
Sbjct: 757 VSIFSDM 763


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 183/459 (39%), Gaps = 69/459 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YN ++ A   LG+  + +  F +M      PDV TY+ ++    +  R    VF
Sbjct: 171 QPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVF 230

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+ +   G      TF  L+ A    GDL  A  +V  M                    
Sbjct: 231 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNM-------------------- 270

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                           K   PN   Y TL+ G   +G++   + 
Sbjct: 271 ------------------------------FLKGCVPNEVTYNTLIHGLCLKGKLDKALS 300

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M     +   P+ VTY T+++ LVK    +    +L  M   G  AN   Y+ L+ 
Sbjct: 301 LLEKM---VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLIS 357

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G  ++ + + A  L +EMA+    +P+VV Y   IDG    +    A     EM ++G  
Sbjct: 358 GLFKEGKSENAVRLWKEMAEKG-CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL 416

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   +Y++LMK F      + A  V+ EM+    ++ ++V  ++L+ G C  G + EA  
Sbjct: 417 PNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQD-MRHNVVCCSVLLNGLCESGRLREALT 475

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +   M   G  P+V  Y S+  G+       + L L+ E++  C+             P 
Sbjct: 476 VWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ--CQ------------EPK 521

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            +PD    + L +   R     +A++++  M + G  P+
Sbjct: 522 SRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPD 560



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 160/388 (41%), Gaps = 37/388 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G LP+   ++ ++  L+ +GD             + R  K  D   +    P+   
Sbjct: 235 MQAEGCLPNPVTFNVLIDALSKNGD-------------LSRAAKLVDNMFLKGCVPNEVT 281

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     GK  K L L ++M      P+ +TY  +I    +  R    V +L  + 
Sbjct: 282 YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME 341

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--IIRELDLEDYSSENE 178
           E G       + SL++     G    +E  V+  +E     CK  ++      D    +E
Sbjct: 342 ERGQKANEYIYSSLISGLFKEGK---SENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 398

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
             D+ +D + E              +L K F PN+  Y++LMKG+  +G     + +   
Sbjct: 399 KPDEAEDILQE--------------MLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKE 444

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  Q+      + V  + +++ L ++G +  A  V   M   G+  + + Y+ ++KG C 
Sbjct: 445 MMSQD---MRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCD 501

Query: 299 QLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
              +DK  +L  EM   + K  PDVV+YNIL +     D+   A+   N M   G  P  
Sbjct: 502 VGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDS 561

Query: 358 ISYTTLMKAFALSSQPKLANKVF-DEML 384
           ++    ++       P    ++F DE++
Sbjct: 562 LTCNIFLETLRERINPPQDGRLFLDELV 589



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 5/208 (2%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEM---TRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           ++ +V++ +++ G    A +    +      G   N +TYN+++K  C+  QID+A +  
Sbjct: 138 SFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTF 197

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           REM       PDV +Y+ L++G         A+   +EM+A G  P  +++  L+ A + 
Sbjct: 198 REMPL-KNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSK 256

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +     A K+ D M     V  + V +N L+ G C  G +++A  ++E+M  +   PN  
Sbjct: 257 NGDLSRAAKLVDNMFLKGCVPNE-VTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQV 315

Query: 430 TYGSLANGISLARKPGEALLLWKEIKER 457
           TYG++ NG+   R+  + + +   ++ER
Sbjct: 316 TYGTIINGLVKQRRAEDGVHILMSMEER 343



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 6/191 (3%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           T+  ++     +       QVL  M R G       + ++ K   +     +A      M
Sbjct: 67  TFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRM 126

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---RARGIAPTKISYTTLMKAFAL 369
           A+D   +  V S+N +++  I   D + A  F+  +    ++G  P  ++Y  ++KA   
Sbjct: 127 ANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCK 186

Query: 370 SSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             Q   A   F EM L++     D+  ++ L+ G C+   V+EA  +++ M+  G  PN 
Sbjct: 187 LGQIDRAVDTFREMPLKN--CNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNP 244

Query: 429 ATYGSLANGIS 439
            T+  L + +S
Sbjct: 245 VTFNVLIDALS 255


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 183/459 (39%), Gaps = 69/459 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YN ++ A   LG+  + +  F +M      PDV TY+ ++    +  R    VF
Sbjct: 195 QPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVF 254

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L+ +   G      TF  L+ A    GDL  A  +V  M                    
Sbjct: 255 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNM-------------------- 294

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                           K   PN   Y TL+ G   +G++   + 
Sbjct: 295 ------------------------------FLKGCVPNEVTYNTLIHGLCLKGKLDKALS 324

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L  M     +   P+ VTY T+++ LVK    +    +L  M   G  AN   Y+ L+ 
Sbjct: 325 LLEKM---VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLIS 381

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G  ++ + + A  L +EMA+    +P+VV Y   IDG    +    A     EM ++G  
Sbjct: 382 GLFKEGKSENAVRLWKEMAEKG-CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL 440

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P   +Y++LMK F      + A  V+ EM+    ++ ++V  ++L+ G C  G + EA  
Sbjct: 441 PNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQD-MRHNVVCCSVLLNGLCESGRLREALT 499

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +   M   G  P+V  Y S+  G+       + L L+ E++  C+             P 
Sbjct: 500 VWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ--CQ------------EPK 545

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            +PD    + L +   R     +A++++  M + G  P+
Sbjct: 546 SRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPD 584



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 160/388 (41%), Gaps = 37/388 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G LP+   ++ ++  L+ +GD             + R  K  D   +    P+   
Sbjct: 259 MQAEGCLPNPVTFNVLIDALSKNGD-------------LSRAAKLVDNMFLKGCVPNEVT 305

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     GK  K L L ++M      P+ +TY  +I    +  R    V +L  + 
Sbjct: 306 YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME 365

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK--IIRELDLEDYSSENE 178
           E G       + SL++     G    +E  V+  +E     CK  ++      D    +E
Sbjct: 366 ERGQKANEYIYSSLISGLFKEGK---SENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 422

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
             D+ +D + E              +L K F PN+  Y++LMKG+  +G     + +   
Sbjct: 423 KPDEAEDILQE--------------MLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKE 468

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M  Q+      + V  + +++ L ++G +  A  V   M   G+  + + Y+ ++KG C 
Sbjct: 469 MMSQD---MRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCD 525

Query: 299 QLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
              +DK  +L  EM   + K  PDVV+YNIL +     D+   A+   N M   G  P  
Sbjct: 526 VGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDS 585

Query: 358 ISYTTLMKAFALSSQPKLANKVF-DEML 384
           ++    ++       P    ++F DE++
Sbjct: 586 LTCNIFLETLRERINPPQDGRLFLDELV 613



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 108/216 (50%), Gaps = 5/216 (2%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEM---TRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           ++ +V++ +++ G    A +    +      G   N +TYN+++K  C+  QID+A +  
Sbjct: 162 SFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTF 221

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           REM       PDV +Y+ L++G         A+   +EM+A G  P  +++  L+ A + 
Sbjct: 222 REMPL-KNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSK 280

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +     A K+ D M     V  + V +N L+ G C  G +++A  ++E+M  +   PN  
Sbjct: 281 NGDLSRAAKLVDNMFLKGCVPNE-VTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQV 339

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
           TYG++ NG+   R+  + + +   ++ER +   E +
Sbjct: 340 TYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYI 375



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 6/191 (3%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           T+  ++     +       QVL  M R G       + ++ K   +     +A      M
Sbjct: 91  TFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRM 150

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---RARGIAPTKISYTTLMKAFAL 369
           A+D   +  V S+N +++  I   D + A  F+  +    ++G  P  ++Y  ++KA   
Sbjct: 151 ANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCK 210

Query: 370 SSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             Q   A   F EM L++     D+  ++ L+ G C+   V+EA  +++ M+  G  PN 
Sbjct: 211 LGQIDRAVDTFREMPLKN--CNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNP 268

Query: 429 ATYGSLANGIS 439
            T+  L + +S
Sbjct: 269 VTFNVLIDALS 279


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 133/558 (23%), Positives = 231/558 (41%), Gaps = 115/558 (20%)

Query: 73  KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL-CMTTF 131
           KP + L++F +  E GA+PD L Y++ ++ C +     +   +L  + E  + +    T+
Sbjct: 247 KPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETY 306

Query: 132 QSLVAAYVGFGDLE-------------IAETIVQA--MREGRRDVCKIIRELDLEDYSSE 176
            S++ A V  G++E             I+  +V A  +  G      +   LDL  Y  E
Sbjct: 307 TSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLF-YKME 365

Query: 177 NEGDDDDDD-------------------EVFEKLLPNSINPS------------------ 199
           NEG   +                     E ++K+    + PS                  
Sbjct: 366 NEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHE 425

Query: 200 SEPPLLPKTFA---PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
               L  ++F     N  I  T++     +G++     +L   R+ E     P+ V+Y  
Sbjct: 426 EALKLFDESFETGLANVFICNTILSWLCKQGKIDKATELL---RKMESRGIGPNVVSYNN 482

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL----------------------- 293
           V+ A  +  +MD AR V + M   G+  N  TY+IL+                       
Sbjct: 483 VMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSN 542

Query: 294 ------------KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
                        G C+  Q  KA+ELL  M ++ +     +SYN +IDGFI   +   A
Sbjct: 543 IEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYA 602

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           +  + EM A GI+P  I+YT+LM     +++   A ++ DEM ++  VK+DI A+  L+ 
Sbjct: 603 VAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEM-KNKGVKLDIPAYGALIH 661

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE---RC 458
           G+C+   +E A  +   + E G  P+   Y SL +G         AL L+K++ +   RC
Sbjct: 662 GFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRC 721

Query: 459 EVK----------KEG-VNADSDLPPPLK-----PDEELLDALADICVRAAFFRKALEIV 502
           ++           KEG +   SDL   ++     PDE +   + +   +   F K +++ 
Sbjct: 722 DLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMF 781

Query: 503 ACMEEHGIPPNKTKYKKI 520
             M+++ + PN   Y  +
Sbjct: 782 EEMKKNNVTPNVLIYNAV 799



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 188/431 (43%), Gaps = 32/431 (7%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLN 66
           L +V   +T++S L   G           D   + +RK     I     P+  +YN V+ 
Sbjct: 439 LANVFICNTILSWLCKQGK---------IDKATELLRKMESRGI----GPNVVSYNNVML 485

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITL 126
           A            +F  M E G KP+  TY+++I  C +   +  ++ V+ ++    I +
Sbjct: 486 AHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEV 545

Query: 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDE 186
               +Q+++      G    A  ++  M E +R     +    + D     EG+ D    
Sbjct: 546 NGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIID-GFIKEGEMDYAVA 604

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
            +E++  N I             +PN   YT+LM G     R+   + M   M+ +    
Sbjct: 605 AYEEMCANGI-------------SPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKL 651

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306
             P    Y  ++    K  +M+ A  + +E+   G+  ++  YN L+ G+     +  A 
Sbjct: 652 DIP---AYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAAL 708

Query: 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
           +L ++M  D  +  D+ +Y  LIDG +   +   A   + EM+A G+ P +I YT ++  
Sbjct: 709 DLYKKMLKDG-LRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNG 767

Query: 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
            +   Q     K+F+EM ++  V  +++ +N ++ G+ R G ++EA R+ + M + G  P
Sbjct: 768 LSKKGQFVKVVKMFEEMKKN-NVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILP 826

Query: 427 NVATYGSLANG 437
           + AT+  L +G
Sbjct: 827 DGATFDILVSG 837



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 143/353 (40%), Gaps = 51/353 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           KP+   Y+ +++ C      +  L++ +QM     + + + Y  +I  LC          
Sbjct: 509 KPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARE 568

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM------------------- 154
            +   I E    +   ++ S++  ++  G+++ A    + M                   
Sbjct: 569 LLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGL 628

Query: 155 -REGRRDVCKIIRE--------LDLEDYSSENEG-----DDDDDDEVFEKLLPNSINPSS 200
            +  R D    +R+        LD+  Y +   G     + +    +F +LL   +NPS 
Sbjct: 629 CKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPS- 687

Query: 201 EPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
           +P            +Y +L+ G+ N G   + V  L   ++   +    D  TYTT++  
Sbjct: 688 QP------------VYNSLISGFRNLG---NMVAALDLYKKMLKDGLRCDLGTYTTLIDG 732

Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
           L+K G++  A  +  EM  +G+  + I Y +++ G  ++ Q  K  ++  EM  +  + P
Sbjct: 733 LLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKN-NVTP 791

Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
           +V+ YN +I G     +   A    +EM  +GI P   ++  L+       QP
Sbjct: 792 NVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGKVGKFQP 844


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/462 (21%), Positives = 193/462 (41%), Gaps = 64/462 (13%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK----------- 101
           D +P   +YNA++N     G   +  +++ +M + G  PDV T+ + +K           
Sbjct: 106 DCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAA 165

Query: 102 ------------------LCARAS---RKHLLV---FVLERILEMGITLCMTTFQSLVAA 137
                              CA  S   +++  +    + + +L+ GI   + TF  L+  
Sbjct: 166 LRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHV 225

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
               G+++ +E +   +   +R VC  +   ++       +G  D+   + E ++   + 
Sbjct: 226 LCKKGNVQESEKLFSKVM--KRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLT 283

Query: 198 P----------------------SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           P                           ++     PN   Y T++ G+   G + +  ++
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R        PD  TY+++++ L   G M+RA  V  E    G   + I YN L+KG
Sbjct: 344 L---RDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +Q  + +A +L+++M +     PD+ +YN++++G   +   + A    N+  A+G  P
Sbjct: 401 LSKQGLVLQALQLMKDMMEHG-CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP 459

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              ++ TL+  +        A ++ D ML    +  D++ +N L+ G C+   ++     
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG-ITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            + M E G  PN+ TY  L       RK  EA+ L+KE+K R
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTR 560



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 30/331 (9%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N+  Y  ++ G+  E    +   +   M +Q      PD +T+  ++  L K G++  + 
Sbjct: 180 NAVSYCAVISGFYKENCQIEAYHLFDEMLKQ---GICPDILTFNKLIHVLCKKGNVQESE 236

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++ +++ + GV  N  T+NI ++G C++  ID+A  LL  +  +  + PDV+SYN LI G
Sbjct: 237 KLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEG-LTPDVISYNTLICG 295

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F        A  + ++M   G+ P + +Y T++  F  +   + A+K+    LRD   K 
Sbjct: 296 FCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI----LRDAMFKG 351

Query: 392 ---DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              D   ++ L+ G C  G +  A  +     E GF  ++  Y +L  G+S      +AL
Sbjct: 352 FIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQAL 411

Query: 449 LLWKEIKER-CE------------VKKEGVNADSD------LPPPLKPDEELLDALADIC 489
            L K++ E  C             + K G  +D++      +     PD    + L D  
Sbjct: 412 QLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGY 471

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            +     KA+EI+  M  HGI P+   Y  +
Sbjct: 472 CKQRNMDKAIEILDTMLSHGITPDVITYNTL 502



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 115/502 (22%), Positives = 200/502 (39%), Gaps = 66/502 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR----------------VRK 44
           ML+ G  P +  ++ ++  L   G+    ES KLF  V+KR                 RK
Sbjct: 207 MLKQGICPDILTFNKLIHVLCKKGN--VQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 45  FSDPD-------IVSDS-KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF---GAKPDV 93
            +  +       IVS+   PD  +YN ++       K  K ++    +H+    G +P+ 
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLI---CGFCKHSKLVEAECYLHKMVNSGVEPNE 321

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-Q 152
            TYN +I    +A        +L   +  G      T+ SL+      GD+  A  +  +
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE 381

Query: 153 AMREGRRDVC--------------KIIRELDLEDYSSENEGDDD--DDDEVFEKLLPNSI 196
           AM +G +                  +++ L L     E+    D    + V   L     
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGC 441

Query: 197 NPSSEPPL---LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
              +   L   + K   P+   + TL+ GY  +  +   + +L  M         PD +T
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH---GITPDVIT 498

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           Y T+++ L KA  +D        M   G   N ITYNIL++ +C+  ++ +A EL +EM 
Sbjct: 499 YNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMK 558

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT-----LMKAFA 368
               + PD+V+   LI G      S G L    E+        K SY+T     ++ AF 
Sbjct: 559 TRG-LTPDIVTLCTLICGLC----SNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFC 613

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                 +A K+F +M        D   + ++++ YC+ G ++ A   +      G  P+ 
Sbjct: 614 EKLNVSMAEKLFHKM-GGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSF 672

Query: 429 ATYGSLANGISLARKPGEALLL 450
            T G + N + +  +  EA+++
Sbjct: 673 TTCGKVLNCLCVTHRLSEAVVI 694



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +Y  +M+ Y  +G+V + V +     R +     P   +Y  +++ LV+ G   +A +V 
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVF---ERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVY 134

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M  IG+  +  T+ I +K +C   +   A  LL  M      E + VSY  +I GF  
Sbjct: 135 MRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQG-CEFNAVSYCAVISGFYK 193

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            +    A   F+EM  +GI P  +++  L+         + + K+F ++++   V  ++ 
Sbjct: 194 ENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRG-VCPNLF 252

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            +N+ ++G CR G ++EA R++E +   G  P+V +Y +L  G     K  EA
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 142/311 (45%), Gaps = 23/311 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y TLM G   E R+ + V +L  M+ +      P  V Y  ++  L K G + R 
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSE---GCSPSPVIYNVLIDGLCKKGDLTRV 276

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++  M   G   N +TYN L+ G C + ++DKA  LL  M   +K  P+ V+Y  LI+
Sbjct: 277 TKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVS-SKCIPNDVTYGTLIN 335

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G +    +  A+   + M  RG    +  Y+ L+       + + A  ++ +M  +   K
Sbjct: 336 GLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKM-AEKGCK 394

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +IV +++LV+G CR G   EAK I+ RM  +G  PN  TY SL  G        EA+ +
Sbjct: 395 PNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQV 454

Query: 451 WKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           WKE+ K  C   K   +              L+D L  +       ++A+ + + M   G
Sbjct: 455 WKEMDKTGCSRNKFCYSV-------------LIDGLCGV----GRVKEAMMVWSKMLTIG 497

Query: 510 IPPNKTKYKKI 520
           I P+   Y  I
Sbjct: 498 IKPDTVAYSSI 508



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 160/386 (41%), Gaps = 33/386 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P    ++ ++  L   GD             + RV K  D   +    P+   
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGD-------------LTRVTKLVDNMFLKGCVPNEVT 294

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++     GK  K + L ++M      P+ +TY  +I    +  R    V +L  + 
Sbjct: 295 YNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSME 354

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G  L    +  L++     G  E A ++ + M E       ++  + ++      EG 
Sbjct: 355 ERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLC--REGK 412

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            ++  E+  +++ +                PN+  Y++LMKG+   G   + V++   M 
Sbjct: 413 PNEAKEILNRMIASGC-------------LPNAYTYSSLMKGFFKTGLCEEAVQVWKEM- 458

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             +      +   Y+ ++  L   G +  A  V ++M  IG+  + + Y+ ++KG C   
Sbjct: 459 --DKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIG 516

Query: 301 QIDKAKELLREM--ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
            +D A +L  EM   ++ K +PDVV+YNIL+DG  +  D + A+   N M  RG  P  I
Sbjct: 517 SMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVI 576

Query: 359 SYTTLMKAFALSSQPKLANKVFDEML 384
           +  T +   +  S      + F E L
Sbjct: 577 TCNTFLNTLSEKSNSCDKGRSFLEEL 602



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 128/535 (23%), Positives = 226/535 (42%), Gaps = 76/535 (14%)

Query: 14  STVVSRLAASGDDGPVESV-------------KLFDVVVKRVRKFSDPDIVSD------- 53
           S+++   A SGD   VE +             + F VV +   K   PD   D       
Sbjct: 81  SSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVD 140

Query: 54  ---SKPDTAAYNAVLNACANLGKPKKFLQLFDQM----HEFGAKPDVLTYNVMIK-LCAR 105
               K    ++N+VLN   N G   + L+ +D +          P+ L++N++IK LC  
Sbjct: 141 EFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCK- 199

Query: 106 ASRKHLLVFV---LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
                 L FV   +E    M    C+    +      G    E  +  V  + E + + C
Sbjct: 200 ------LRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGC 253

Query: 163 K---IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
               +I  + ++    +       D     KL+ N         +  K   PN   Y TL
Sbjct: 254 SPSPVIYNVLIDGLCKKG------DLTRVTKLVDN---------MFLKGCVPNEVTYNTL 298

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           + G   +G++   V +L    R   +   P+ VTY T+++ LVK      A ++L+ M  
Sbjct: 299 IHGLCLKGKLDKAVSLL---ERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
            G   N+  Y++L+ G  ++ + ++A  L R+MA+    +P++V Y++L+DG        
Sbjct: 356 RGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG-CKPNIVVYSVLVDGLCREGKPN 414

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            A    N M A G  P   +Y++LMK F  +   + A +V+ EM +    + +   +++L
Sbjct: 415 EAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSR-NKFCYSVL 473

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           ++G C +G V+EA  +  +M   G  P+   Y S+  G+        AL L+ E+  + E
Sbjct: 474 IDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEE 533

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALAD-ICVRAAFFRKALEIVACMEEHGIPPN 513
                        P  +PD    + L D +C++    R A++++  M + G  P+
Sbjct: 534 -------------PKSQPDVVTYNILLDGLCMQKDISR-AVDLLNSMLDRGCDPD 574



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 18/272 (6%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+ +++  V+ AL K   +DRA +V   M       +  TY  L+ G C++ +ID+A  L
Sbjct: 185 PNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L EM  +    P  V YN+LIDG     D        + M  +G  P +++Y TL+    
Sbjct: 245 LDEMQSEG-CSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC 303

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
           L  +   A  + + M+    +  D V +  L+ G  +     +A R++  M+E G++ N 
Sbjct: 304 LKGKLDKAVSLLERMVSSKCIPND-VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ 362

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
             Y  L +G+    K  EA+ LW+++ E+                  KP+  +   L D 
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEK----------------GCKPNIVVYSVLVDG 406

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             R     +A EI+  M   G  PN   Y  +
Sbjct: 407 LCREGKPNEAKEILNRMIASGCLPNAYTYSSL 438



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 100/237 (42%), Gaps = 23/237 (9%)

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +  I P+ +S+N++I     +     A+  F  M  R   P   +Y TLM       +  
Sbjct: 180 NMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERID 239

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A  + DEM +        V +N+L++G C+ G +    ++++ M   G  PN  TY +L
Sbjct: 240 EAVLLLDEM-QSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTL 298

Query: 435 ANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
            +G+ L  K  +A+ LL + +  +C                  P++     L +  V+  
Sbjct: 299 IHGLCLKGKLDKAVSLLERMVSSKC-----------------IPNDVTYGTLINGLVKQR 341

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAE 550
               A+ +++ MEE G   N    + IY  + S +F    A +A    R+  ++  +
Sbjct: 342 RATDAVRLLSSMEERGYHLN----QHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCK 394


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 183/390 (46%), Gaps = 32/390 (8%)

Query: 145 EIAETIVQAMREGRRDVCKIIRELD--LEDYSSENEGDDDDDDEVFEKLLP-NSINPSSE 201
           +I  ++V+ + +  +D+ K +   D   E+YS+    D +    +  +L+  N   P+  
Sbjct: 12  QITNSLVEQLIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRLVSVNQFRPAE- 70

Query: 202 PPLLPKTFAPNSRI----YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
             +L +    +  +    + T+ +GY    R  D +R+   M   ED    P   +Y TV
Sbjct: 71  -GMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKM---EDFQVKPTQKSYLTV 126

Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKELLREMADDA 316
              LV+   + RA     EM   G+P   ++ NIL+K  C+  + ++ A  L REM +  
Sbjct: 127 FDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRG 186

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
             +PD  +Y  LI+G   +   + A    +EM  +G++P+ +SYT+L+     S+    A
Sbjct: 187 -CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEA 245

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            ++ +EM+ +  ++ ++  ++ L++G C+ G   +A  ++E M      PN+ TY +L N
Sbjct: 246 IELLEEMIING-IEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLIN 304

Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
           G+    K  EA+    EI +R  ++             LKPD  +   +      A  ++
Sbjct: 305 GLCKEGKHREAV----EILDRMRLQG------------LKPDAGMYGRIISGLCAACNYQ 348

Query: 497 KALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
           +A   +  M   GI PN+  +   +V+MH+
Sbjct: 349 EAANFIDEMALGGISPNRASW-TFHVKMHN 377



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 181/441 (41%), Gaps = 79/441 (17%)

Query: 28  PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           P++++++F        K  D  +    KP   +Y  V +        K+ +  + +M E 
Sbjct: 101 PLDAIRVF-------HKMEDFQV----KPTQKSYLTVFDILVEENHVKRAIGFYKEMREK 149

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM---TTFQSLVAAYVGFGDL 144
           G  P V++ N++IK   +        F L R  EM    C     T+ +L+      G +
Sbjct: 150 GIPPTVVSLNILIKALCKNEETVESAFRLFR--EMPNRGCQPDSYTYGTLINGLCKLGKI 207

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204
             A+ ++  M E                                                
Sbjct: 208 SQAKELLDEMEE------------------------------------------------ 219

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
             K  +P+   YT+L+ G      + + + +L  M     N   P+  TY++++  L K+
Sbjct: 220 --KGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMI---INGIEPNVFTYSSLMDGLCKS 274

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
           G   +A ++L  M R  +  N +TY+ L+ G C++ +  +A E+L  M     ++PD   
Sbjct: 275 GHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQG-LKPDAGM 333

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ-------PKLAN 377
           Y  +I G     +   A  F +EM   GI+P + S+T  +K   +  Q       P  A 
Sbjct: 334 YGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAF 393

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           +++  M R   + V+I  ++ LV+ +C+ G + +A RI+E M  +G  P+   +  L  G
Sbjct: 394 QLYLSM-RTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCG 452

Query: 438 ISLARKPGEAL-LLWKEIKER 457
           +   +K  E   LL  E+K++
Sbjct: 453 LWDRKKVRETTELLVAELKQK 473


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 131/576 (22%), Positives = 232/576 (40%), Gaps = 97/576 (16%)

Query: 28  PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           P E++K+F  V+ R            ++PD   ++  + A   +      L L  +M E 
Sbjct: 255 PEEAMKIFRRVMSR-----------GAEPDGLLFSLAVQAACKMKDLVMALDLLREMREK 303

Query: 88  GAKP-DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
           G  P    TY  +I  C +       V V + ++  GI + +    SL+  +    +L  
Sbjct: 304 GGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGK 363

Query: 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS------ 200
           A      M E      K++  + +E +    E +     E+++++    I PSS      
Sbjct: 364 ALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAV--EIYKRMKSVGIAPSSVLVHKM 421

Query: 201 --------EPPLLPKTFAPNSRIYTTLMKGYM---------NEGRVSDTVRMLGAMRRQE 243
                    P    + F  N    T +  G+M          +G+V      L   R  E
Sbjct: 422 IQGCLKAESPEAALEIF--NDSFETWIAHGFMCNKIFLLLCKQGKVDAATSFL---RMME 476

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY------- 296
           +    P+ V Y  ++ A  +  +MD AR + +EM   G+  N  TY+IL+ G+       
Sbjct: 477 NKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQ 536

Query: 297 ----------------------------CQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
                                       C+  Q  KAKE+L+ +  + +      SYN +
Sbjct: 537 NAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSYNSI 596

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           IDGF    D+  A+  + EM   GI+P  +++T+L+  F  S++  LA ++  EM +   
Sbjct: 597 IDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEM-KSKD 655

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +K+D+ A+  L++G+C+   ++ A  +   + E G  PNV+ Y +L +G     K   A+
Sbjct: 656 LKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAI 715

Query: 449 LLWKEIKE---RCE-----------VKKEGVNADSDLPPPL-----KPDEELLDALADIC 489
            L+K++      C+           +K   +   SDL   L      PDE L   L +  
Sbjct: 716 DLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGL 775

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
            +   F +A +++  M++    PN   Y  +    H
Sbjct: 776 SKKGQFVRASKMLEEMKKKDATPNVLIYSTVIAGHH 811



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 168/398 (42%), Gaps = 27/398 (6%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           GK          M   G +P+V+ YN M+    R     L   +   +LE G+     T+
Sbjct: 463 GKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTY 522

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKL 191
             L+  +    D + A  ++  M     +  ++I    +        G      E+ + L
Sbjct: 523 SILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKV--GQTSKAKEMLQNL 580

Query: 192 LPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
           +              K ++     Y +++ G+  EG   DT   + A R   +N   P+ 
Sbjct: 581 IKE------------KRYSMGCTSYNSIIDGFFKEG---DTDSAVEAYREMSENGISPNV 625

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMT----RIGVPANRITYNILLKGYCQQLQIDKAKE 307
           VT+T++++   K+  MD A +++ EM     ++ VPA    Y  L+ G+C++  +  A  
Sbjct: 626 VTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPA----YGALIDGFCKKNDMKTAYT 681

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           L  E+ +   + P+V  YN LI GF  +     A+  + +M   GI+    +YTT++   
Sbjct: 682 LFSELLE-LGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGL 740

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
                  LA+ ++ E+L    V  D + + +LV G  + G    A +++E MK+    PN
Sbjct: 741 LKDGNLILASDLYSELLALGIVP-DEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPN 799

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
           V  Y ++  G        EA  +  E+ E+  V  + +
Sbjct: 800 VLIYSTVIAGHHREGNLNEAFRVHDEMLEKGLVHDDTI 837



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/387 (19%), Positives = 148/387 (38%), Gaps = 62/387 (16%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   YN ++ A   +        +F +M E G +P+  TY+++I    +   +     
Sbjct: 481 EPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWE 540

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           V+ +++          + +++      G    A+ ++Q + + +R        +    Y+
Sbjct: 541 VINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKR------YSMGCTSYN 594

Query: 175 S-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           S       EGD D   E + ++  N I             +PN   +T+L+ G+    R+
Sbjct: 595 SIIDGFFKEGDTDSAVEAYREMSENGI-------------SPNVVTFTSLINGFCKSNRM 641

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
              + M+  M+ ++     P    Y  ++    K   M  A  + +E+  +G+  N   Y
Sbjct: 642 DLALEMIHEMKSKDLKLDVP---AYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVY 698

Query: 290 NILLKGYCQQLQIDKAKELLREMADDA--------------------------------- 316
           N L+ G+    ++D A +L ++M +D                                  
Sbjct: 699 NNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLA 758

Query: 317 -KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
             I PD + Y +L++G         A     EM+ +   P  + Y+T++           
Sbjct: 759 LGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIYSTVIAGHHREGNLNE 818

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEG 402
           A +V DEML    V  D + +N+LV G
Sbjct: 819 AFRVHDEMLEKGLVHDDTI-FNLLVSG 844



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 119/303 (39%), Gaps = 52/303 (17%)

Query: 199 SSEPPLLPKTFAPN-------------SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           SS P L+P     N             SR +  L+  Y+   R+   V     M    D 
Sbjct: 142 SSNPTLIPSAMVNNLVDSSKRFDFELSSRAFNYLLNAYIRNRRMDYAVDCFNLMV---DR 198

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY--------- 296
              P       V+S+LV++  +D A+++  +M  IGV  + +T  +L++           
Sbjct: 199 NVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEA 258

Query: 297 --------------------------CQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
                                     C+   +  A +LLREM +   +     +Y  +I 
Sbjct: 259 MKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGVPASQETYTSVIV 318

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
             +   +   A+   +EM   GI  + I+ T+L+  F   ++   A   F+ M  +  + 
Sbjct: 319 ACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNRM-EEEGLA 377

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D V +++++E +C+   +E+A  I +RMK  G  P+      +  G   A  P  AL +
Sbjct: 378 PDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEI 437

Query: 451 WKE 453
           + +
Sbjct: 438 FND 440



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 116/265 (43%), Gaps = 24/265 (9%)

Query: 36  DVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
           D  V+  R+ S+  I     P+   + +++N      +    L++  +M     K DV  
Sbjct: 607 DSAVEAYREMSENGI----SPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPA 662

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM- 154
           Y  +I    + +       +   +LE+G+   ++ + +L++ +   G ++ A  + + M 
Sbjct: 663 YGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMV 722

Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
            +G           DL  Y++  +G   D + +    L +         LL     P+  
Sbjct: 723 NDGI--------SCDLFTYTTMIDGLLKDGNLILASDLYSE--------LLALGIVPDEI 766

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +Y  L+ G   +G+     +ML  M++++   + P+ + Y+TV++   + G+++ A +V 
Sbjct: 767 LYVVLVNGLSKKGQFVRASKMLEEMKKKD---ATPNVLIYSTVIAGHHREGNLNEAFRVH 823

Query: 275 AEMTRIGVPANRITYNILLKGYCQQ 299
            EM   G+  +   +N+L+ G  ++
Sbjct: 824 DEMLEKGLVHDDTIFNLLVSGRVEK 848



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 23/232 (9%)

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFF 345
           +N LL  Y +  ++D A +    M D   + P V   N ++   +   LID+   A   +
Sbjct: 172 FNYLLNAYIRNRRMDYAVDCFNLMVD-RNVVPFVPYVNNVLSSLVRSNLIDE---AKEIY 227

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
           N+M   G+A   ++   LM+A     +P+ A K+F  ++     + D + +++ V+  C+
Sbjct: 228 NKMVLIGVAGDNVTTQLLMRASLRERKPEEAMKIFRRVMSRG-AEPDGLLFSLAVQAACK 286

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
           M  +  A  ++  M+E G  P  A+  +  + I    K G        ++E  +VK E V
Sbjct: 287 MKDLVMALDLLREMREKGGVP--ASQETYTSVIVACVKEG-------NMEEAVKVKDEMV 337

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                +P  +     L+    +         KAL+    MEE G+ P+K  +
Sbjct: 338 GF--GIPMSVIAATSLITGFCN----GNELGKALDFFNRMEEEGLAPDKVMF 383


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 183/440 (41%), Gaps = 60/440 (13%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           A+  ++ A A +   +K ++ F+ M +F  KPDV TYN ++ +  R     L + +  R+
Sbjct: 128 AFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRM 187

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L++     + TF  L+      G  + A  +   M + R    KI   + +       + 
Sbjct: 188 LKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKA 247

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           D      V  +L     +             P+S  Y  L+ G+   GRV + + +L   
Sbjct: 248 D------VAYRLFIAMKDHGC---------IPDSVTYNALLHGFCKLGRVDEALGLLKYF 292

Query: 240 ----------------------RRQED----------NASHPDHVTYTTVVSALVKAGSM 267
                                 RR ED          +   PD + YT ++  L KAG  
Sbjct: 293 EKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKF 352

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
             A ++L EMT  G+  +   YN L+KGYC    +D+AK L  E++ +        +Y I
Sbjct: 353 KDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFS-SACTYTI 411

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML--R 385
           LI G         A   FNEM   G  P+ +++  L+  F  +   + A  +F +M   R
Sbjct: 412 LICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGR 471

Query: 386 DPRV----------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           +P +           +D  +   +VE  C  GL+ +A  I+ ++ ++GF PN+ TY  L 
Sbjct: 472 NPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILI 531

Query: 436 NGISLARKPGEALLLWKEIK 455
           +G   A     A  L+KE++
Sbjct: 532 HGFCKAGNINGAFKLFKELQ 551



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 37/257 (14%)

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           LG   R       P+  T++ ++  + K+G    A Q+  EMT+  +  N+ITY I++ G
Sbjct: 181 LGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISG 240

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNE----- 347
            CQ  + D A  L   M D   I PD V+YN L+ GF     +D++ G L +F +     
Sbjct: 241 LCQAQKADVAYRLFIAMKDHGCI-PDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVL 299

Query: 348 ------------MRAR---------------GIAPTKISYTTLMKAFALSSQPKLANKVF 380
                        RAR                I P  I YT +MK  + + + K A ++ 
Sbjct: 300 DKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLL 359

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           +EM     V  D   +N L++GYC +GL++EAK +   + +N  + +  TY  L  G+  
Sbjct: 360 NEMTERGLVP-DTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCR 418

Query: 441 ARKPGEALLLWKEIKER 457
           +   G+A  ++ E+++ 
Sbjct: 419 SGLVGDAQQIFNEMEKH 435



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 165/415 (39%), Gaps = 104/415 (25%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+ A ++ +++     GK +  LQ+FD+M +    P+ +TY ++I    +A +  +   +
Sbjct: 194 PNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRL 253

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              + + G      T+ +L+  +   G ++ A  +++   + R         LD + YS 
Sbjct: 254 FIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRY-------VLDKQGYSC 306

Query: 176 ENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             +G       +D    + K+  ++I P             +  +YT +MKG    G+  
Sbjct: 307 LIDGLFRARRFEDAQVWYRKMTEHNIKP-------------DVILYTIMMKGLSKAGKFK 353

Query: 231 DTVRMLGAMRRQ--------------------------------EDNASHPDHVTYTTVV 258
           D +R+L  M  +                                  N       TYT ++
Sbjct: 354 DALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILI 413

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM------ 312
             + ++G +  A+Q+  EM + G   + +T+N L+ G+C+   I+KA+ L  +M      
Sbjct: 414 CGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNP 473

Query: 313 -----------------------------------------ADDAKIEPDVVSYNILIDG 331
                                                      D+   P++++YNILI G
Sbjct: 474 SLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHG 533

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
           F    +  GA   F E++ +G++P  ++Y TL+     +++ + A  V D++L++
Sbjct: 534 FCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKN 588



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 53/304 (17%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           V++  ++  L+K    +   QVL E+ R G   +   + +L++ Y +   I+KA E   E
Sbjct: 92  VSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESF-E 150

Query: 312 MADDAKIEPDVVSYN-----------------------------------ILIDGFILID 336
           M  D   +PDV +YN                                   ILIDG     
Sbjct: 151 MMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSG 210

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
            +  AL  F+EM  R I P KI+YT ++     + +  +A ++F  M +D     D V +
Sbjct: 211 KTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAM-KDHGCIPDSVTY 269

Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           N L+ G+C++G V+EA  +++  +++ +  +   Y  L +G+  AR+  +A + ++++ E
Sbjct: 270 NALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTE 329

Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516
                             +KPD  L   +     +A  F+ AL ++  M E G+ P+   
Sbjct: 330 H----------------NIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHC 373

Query: 517 YKKI 520
           Y  +
Sbjct: 374 YNAL 377



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 5/249 (2%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F+ ++  +T L++ Y     +   V     M+   D    PD  TY TV+  +V+   + 
Sbjct: 122 FSISADAFTVLIQAYAKMDMIEKAVESFEMMK---DFDCKPDVFTYNTVLHVMVRKEVVL 178

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  +   M ++    N  T++IL+ G C+  +   A ++  EM    +I P+ ++Y I+
Sbjct: 179 LALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQ-RRILPNKITYTII 237

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G      +  A   F  M+  G  P  ++Y  L+  F    +   A  +     +D R
Sbjct: 238 ISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKD-R 296

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
             +D   ++ L++G  R    E+A+    +M E+   P+V  Y  +  G+S A K  +AL
Sbjct: 297 YVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDAL 356

Query: 449 LLWKEIKER 457
            L  E+ ER
Sbjct: 357 RLLNEMTER 365



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 112/529 (21%), Positives = 205/529 (38%), Gaps = 95/529 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRV---RKFSDPDIVSD---- 53
           ML+   LP++  +S ++  +  SG      ++++FD + +R     K +   I+S     
Sbjct: 187 MLKLNCLPNIATFSILIDGMCKSGKTQ--NALQMFDEMTQRRILPNKITYTIIISGLCQA 244

Query: 54  -----------------SKPDTAAYNAVLNACANLGKPKKFLQL---------------- 80
                              PD+  YNA+L+    LG+  + L L                
Sbjct: 245 QKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGY 304

Query: 81  -------------------FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
                              + +M E   KPDV+ Y +M+K  ++A +    + +L  + E
Sbjct: 305 SCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTE 364

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+      + +L+  Y   G L+ A+++   +   + D         +        G  
Sbjct: 365 RGLVPDTHCYNALIKGYCDLGLLDEAKSL--HLEISKNDCFSSACTYTILICGMCRSGLV 422

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM-- 239
            D  ++F ++  +   PS                +  L+ G+   G +     +   M  
Sbjct: 423 GDAQQIFNEMEKHGCYPSVVT-------------FNALIDGFCKAGNIEKAQLLFYKMEI 469

Query: 240 --------RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
                   R  +      D  +  T+V  L  +G + +A  +L ++T  G   N ITYNI
Sbjct: 470 GRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNI 529

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G+C+   I+ A +L +E+     + PD V+Y  LI+G +  +    A T  +++   
Sbjct: 530 LIHGFCKAGNINGAFKLFKELQLKG-LSPDSVTYGTLINGLLSANREEDAFTVLDQILKN 588

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD-PRVKVDIVAWNMLVEGYCRMGLVE 410
           G  P    Y + M      ++  LA  ++ + LR  P    +++     VE     G VE
Sbjct: 589 GCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKS---VEENFEKGEVE 645

Query: 411 EAKRIIERM--KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           EA R +  M  K N F   +A Y     G+  A +  EAL ++  ++E 
Sbjct: 646 EAVRGLLEMDFKLNDF--QLAPYTIWLIGLCQAGRLEEALKIFFTLEEH 692


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/502 (21%), Positives = 200/502 (39%), Gaps = 107/502 (21%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHE-FGAKPDVLTYNVMIKLCARASRKHLLVF 114
           PD   +N ++       +P++   +  +M E +G  P + T+N+++    ++ +    + 
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             E     G T+ + T+ ++V                                    D+ 
Sbjct: 152 HFETTTTNGCTIDIHTYTAIV------------------------------------DWL 175

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           ++N+    D   + EK+  N   P+                Y  L+ G    GR+ + + 
Sbjct: 176 AKNK-KIQDAVALMEKITANGCTPTIAT-------------YNALLNGLCKMGRLEEAID 221

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +L   R+  DN   PD VTYT+++  L K      A ++  EM   G+  + + Y  L++
Sbjct: 222 LL---RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIR 278

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G  Q  +I +A  + + M     + PDVV+ + +IDG         A+  F  M ARG+A
Sbjct: 279 GLLQAGKIPQASSVYKTMTSQGCV-PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLA 337

Query: 355 PTKISYTTLM--------------------KAFAL---------------SSQPKLANKV 379
           P ++ Y+ L+                    KAF                 S   + A   
Sbjct: 338 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 397

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           FDEML +   K D+  +N+LV G+C+ G  + A  + + M  +   PNV TYG+L +G+ 
Sbjct: 398 FDEML-EAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLC 456

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
             R+  +A L ++ +KER                   PD  +  +L D   ++       
Sbjct: 457 KRRQLTKASLYFQHMKER----------------GCPPDSFVYSSLVDGLCKSGKLEGGC 500

Query: 500 EIVACMEEHGIPPNKTKYKKIY 521
            +   ME  G+  ++T+ + I+
Sbjct: 501 MLFDEMERSGVANSQTRTRLIF 522



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 57/297 (19%)

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLR-EMADDAKIEPDVVSYNILIDGFILIDD 337
           R G   +  T N LL  + +  +  +A  LL+ E+A      PDV ++N+LI G+ L  +
Sbjct: 52  RFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELA--TTFLPDVETWNVLITGYCLARE 109

Query: 338 SAGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKLA-------------------N 377
              A     EM    G+AP+  ++  ++     S +   A                    
Sbjct: 110 PEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYT 169

Query: 378 KVFDEMLRDPRVK---------------VDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
            + D + ++ +++                 I  +N L+ G C+MG +EEA  ++ ++ +N
Sbjct: 170 AIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 229

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EGVNADSDLPPP 474
           G  P+V TY SL +G+   ++  EA  L+KE+  R  V           G+     +P  
Sbjct: 230 GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQA 289

Query: 475 -----------LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                        PD   L  + D   +A     A+ I   ME  G+ PN+  Y  +
Sbjct: 290 SSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 346



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 126/334 (37%), Gaps = 71/334 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P V   ST++  L  +G  G   +V++F  +  R              P+   
Sbjct: 296 MTSQGCVPDVVTLSTMIDGLCKAGRIGA--AVRIFKSMEAR-----------GLAPNEVV 342

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+A+++      K    L++  QM +    PD +TYN++I  LC     +    F  + +
Sbjct: 343 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF-FDEM 401

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           LE G    + T+  LV+ +   G+ + A              C +      +D SS +  
Sbjct: 402 LEAGCKPDVYTYNILVSGFCKAGNTDAA--------------CGV-----FDDMSSSH-- 440

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                         +PN   Y TL+ G     +++        M
Sbjct: 441 -----------------------------CSPNVVTYGTLISGLCKRRQLTKASLYFQHM 471

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +   +    PD   Y+++V  L K+G ++    +  EM R GV AN  T   L+   C+ 
Sbjct: 472 K---ERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKA 527

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            ++D+A  L   +  +    P   +YN +I   I
Sbjct: 528 NRVDEAVSLFNAIRKEGMPHP--YAYNSIISTLI 559



 Score = 42.0 bits (97), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 14/132 (10%)

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGLVEEAKR 414
           +IS   ++K F       LA ++F + L  PR   +  +   N L++ + R     EA  
Sbjct: 22  EISTDAVVKIFQCLKDADLAWELF-QCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGN 80

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           +++      F P+V T+  L  G  LAR+P EA  + +E++E           D  + P 
Sbjct: 81  LLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEE-----------DYGVAPS 129

Query: 475 LKPDEELLDALA 486
           LK    +L  L 
Sbjct: 130 LKTHNLVLHGLC 141


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 192/434 (44%), Gaps = 35/434 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G+ PH+ A + +++ LA           +L D+V K  +K +   +    + +   
Sbjct: 156 MMVNGFRPHLHACTVLLNSLAKD---------RLTDMVWKVYKKMARIGV----EANIHV 202

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +++AC   G  +K   L  +M      PD+ TYN +I L  +    +  + V +R+ 
Sbjct: 203 YNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRME 262

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   + T+ SL+  +   G +  A  + + +R+   +   +     ++ Y   N  D
Sbjct: 263 REGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPN--HVTYTTLIDGYCRLN--D 318

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D    + E++    + P+                Y ++++     GR+ D  ++L  M 
Sbjct: 319 LDQALRLREEMEAQGLYPTVVT-------------YNSILRKLCEIGRIRDANKLLNEMS 365

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            ++     PD+VT  T+++A  K G M  A +V   M   G+  ++ TY  L+ G+C+  
Sbjct: 366 EKK---IEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIR 422

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++D AKELL  M  DA   P   +Y+ L+DG+    +    L   +E   +G+   K  Y
Sbjct: 423 EMDGAKELLLSML-DAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLY 481

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L++ F    Q   A K+F  ++++     D V +  L   Y ++G    A  +++ M 
Sbjct: 482 RALIRRFCKREQVDYAKKIFS-LMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMY 540

Query: 421 ENGFYPNVATYGSL 434
           +      +  Y +L
Sbjct: 541 KRRLMITLKIYRAL 554



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 7/232 (3%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N  +Y  L+      G V     +L  M   E     PD  TY T++S   K G    A 
Sbjct: 199 NIHVYNVLIHACCKSGDVEKADNLLSEM---ESKCVFPDLFTYNTLISLYCKKGMHYEAL 255

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            V   M R G+  + +TYN L+ G+C++ ++ +A  L +E+ D     P+ V+Y  LIDG
Sbjct: 256 SVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDAT---PNHVTYTTLIDG 312

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           +  ++D   AL    EM A+G+ PT ++Y ++++      + + ANK+ +EM  + +++ 
Sbjct: 313 YCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEM-SEKKIEP 371

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           D V  N L+  YC++G ++ A ++  RM E G   +  TY +L +G    R+
Sbjct: 372 DNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIRE 423



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 143/309 (46%), Gaps = 23/309 (7%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           NS +++ L+  Y N     + +++   M     N   P     T ++++L K    D   
Sbjct: 129 NSHVFSWLVIVYANTKMKQEAIQVFEHMMV---NGFRPHLHACTVLLNSLAKDRLTDMVW 185

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           +V  +M RIGV AN   YN+L+   C+   ++KA  LL EM     + PD+ +YN LI  
Sbjct: 186 KVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKC-VFPDLFTYNTLISL 244

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           +        AL+  + M   GI P  ++Y +L+  F    + + A ++F E +RD     
Sbjct: 245 YCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKE-IRDA--TP 301

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           + V +  L++GYCR+  +++A R+ E M+  G YP V TY S+   +    +  +A  L 
Sbjct: 302 NHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLL 361

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
            E+ E+                 ++PD    + L +   +    + AL++   M E G+ 
Sbjct: 362 NEMSEK----------------KIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLK 405

Query: 512 PNKTKYKKI 520
            ++  YK +
Sbjct: 406 LDQFTYKAL 414



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 189/434 (43%), Gaps = 63/434 (14%)

Query: 37  VVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
           V+   VR   DPDI      ++  ++ ++   AN    ++ +Q+F+ M   G +P +   
Sbjct: 115 VLSALVRLHDDPDI------NSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHAC 168

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
            V++   A+     ++  V +++  +G+   +  +  L+ A    GD+E A+ ++  M  
Sbjct: 169 TVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMES 228

Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
                 K +   DL  Y++           ++ K   +    S +  +  +   P+   Y
Sbjct: 229 ------KCVFP-DLFTYNTL--------ISLYCKKGMHYEALSVQDRMEREGIKPDIVTY 273

Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            +L+ G+  EGR+ + +R+   +R      + P+HVTYTT++    +   +D+A ++  E
Sbjct: 274 NSLIHGFCKEGRMREAMRLFKEIRD-----ATPNHVTYTTLIDGYCRLNDLDQALRLREE 328

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M   G+    +TYN +L+  C+  +I  A +LL EM++  KIEPD V+ N LI+ +  I 
Sbjct: 329 MEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEK-KIEPDNVTCNTLINAYCKIG 387

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
           D   AL   N M   G+   + +Y  L+  F    +   A ++   ML D         +
Sbjct: 388 DMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSML-DAGFSPSYCTY 446

Query: 397 NMLVEGYC----------------RMGL-------------------VEEAKRIIERMKE 421
           + LV+GYC                R GL                   V+ AK+I   M+E
Sbjct: 447 SWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQE 506

Query: 422 NGFYPNVATYGSLA 435
            G   +   Y SLA
Sbjct: 507 KGTLGDSVIYTSLA 520


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 205/473 (43%), Gaps = 48/473 (10%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++A    G   +  +L  +M E G    +  Y+ M+        +   + V ER+ 
Sbjct: 359 YSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLK 418

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRE-LDLEDYS 174
           E G    + ++  L+  YV  G +  A  I + M     +   +    +I   + L D++
Sbjct: 419 ECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFA 478

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           +           +FE ++ + + P             +  IY  L++ +   G +   +R
Sbjct: 479 NAFS--------IFEDMIKSGLQP-------------DRAIYNLLVEAFCKMGNMDRAIR 517

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   M+++      P + T+  ++     AG M RA   L  M R G     +TYN L+ 
Sbjct: 518 IFERMQKER---MQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIH 574

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G  ++ Q++KA  +L +M+  A I P+  +Y I++ G+    D   A  +F +++  G+ 
Sbjct: 575 GLVRKHQVEKAVSVLDKMSI-AGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLK 633

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
                Y TL++A   S + + A  V  EM    ++  +   +N+L++G+ R G V EA  
Sbjct: 634 LDVYIYETLLRACCKSGRMQSALAVTREMSFQ-KIPRNTFIYNILIDGWARRGDVWEAAD 692

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           ++++MKE+G  PN+ T+ S  N      K G+       I+E  +V              
Sbjct: 693 LLKQMKEDGIPPNIHTFTSYINACC---KAGDMQRAENVIQEMADVG------------- 736

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
           LKP+ +    L     R +   +AL+    M+  G+ P++  Y  +   + SR
Sbjct: 737 LKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSR 789



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/462 (21%), Positives = 175/462 (37%), Gaps = 69/462 (14%)

Query: 90  KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
           KP    + +M+   A+   KH      E +   GI      F SLV AY   GD+  A +
Sbjct: 248 KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALS 307

Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
            V+ M+    ++  +   + +  Y   N  D    D +F++      N            
Sbjct: 308 CVEEMKSEGIEMTVVTYSILISGYGKTN--DAQSADNLFKEAKTKLDNL----------- 354

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
             N  IY+ ++  +   G +     ++  M  +ED    P  V Y +++          +
Sbjct: 355 --NGIIYSNIIHAHCQSGNMDRAEELVREM--EEDGIDAPIDV-YHSMMHGYTVVQDEKK 409

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
              V   +   G     I+Y  L+  Y +  ++ KA  + +EM +   I+ +  +Y++LI
Sbjct: 410 CLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEM-ESHGIKHNNKTYSMLI 468

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM------ 383
           +GFI + D A A + F +M   G+ P +  Y  L++AF        A ++F+ M      
Sbjct: 469 NGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQ 528

Query: 384 ----------------------------LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
                                       +R       ++ +N L+ G  R   VE+A  +
Sbjct: 529 PSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSV 588

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
           +++M   G  PN  TY  +  G + +   G+A   + +IKE                  L
Sbjct: 589 LDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKE----------------SGL 632

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           K D  + + L   C ++   + AL +   M    IP N   Y
Sbjct: 633 KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIY 674



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 118/286 (41%), Gaps = 33/286 (11%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    +  ++   A  G  K+     D M   G  P V+TYN +I    R  +    V 
Sbjct: 528 QPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVS 587

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           VL+++   GI     T+  ++  Y   GD+  A      ++E           L L+ Y 
Sbjct: 588 VLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKES---------GLKLDVY- 637

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-------FAPNSRIYTTLMKGYMNEG 227
                       ++E LL            L  T          N+ IY  L+ G+   G
Sbjct: 638 ------------IYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRG 685

Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
            V +   +L  M+   ++   P+  T+T+ ++A  KAG M RA  V+ EM  +G+  N  
Sbjct: 686 DVWEAADLLKQMK---EDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVK 742

Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           T+  L+KG+ +    D+A +   EM   A ++PD  +Y+ L+   +
Sbjct: 743 TFTTLIKGWARVSLPDRALKCFEEM-KSAGLKPDEAAYHCLVTSLL 787


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/462 (21%), Positives = 193/462 (41%), Gaps = 64/462 (13%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK----------- 101
           D +P   +YNA++N     G   +  +++ +M + G  PDV T+ + +K           
Sbjct: 106 DCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAA 165

Query: 102 ------------------LCARAS---RKHLLV---FVLERILEMGITLCMTTFQSLVAA 137
                              CA  S   +++  +    + + +L+ GI   + TF  L+  
Sbjct: 166 LRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHV 225

Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
               G+++ +E +   +   +R VC  +   ++       +G  D+   + E ++   + 
Sbjct: 226 LCKKGNVQESEKLFSKVM--KRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLT 283

Query: 198 P----------------------SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           P                           ++     PN   Y T++ G+   G + +  ++
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R        PD  TY+++++ L   G M+RA  V  E    G   + I YN L+KG
Sbjct: 344 L---RDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
             +Q  + +A +L+++M +     PD+ +YN++++G   +   + A    N+  A+G  P
Sbjct: 401 LSKQGLVLQALQLMKDMMEHG-CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP 459

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
              ++ TL+  +        A ++ D ML    +  D++ +N L+ G C+   ++     
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG-ITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            + M E G  PN+ TY  L       RK  EA+ L+KE+K R
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTR 560



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 30/331 (9%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N+  Y  ++ G+  E    +   +   M +Q      PD +T+  ++  L K G++  + 
Sbjct: 180 NAVSYCAVISGFYKENCQIEAYHLFDEMLKQ---GICPDILTFNKLIHVLCKKGNVQESE 236

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           ++ +++ + GV  N  T+NI ++G C++  ID+A  LL  +  +  + PDV+SYN LI G
Sbjct: 237 KLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEG-LTPDVISYNTLICG 295

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F        A  + ++M   G+ P + +Y T++  F  +   + A+K+    LRD   K 
Sbjct: 296 FCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI----LRDAMFKG 351

Query: 392 ---DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
              D   ++ L+ G C  G +  A  +     E GF  ++  Y +L  G+S      +AL
Sbjct: 352 FIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQAL 411

Query: 449 LLWKEIKER-CE------------VKKEGVNADSD------LPPPLKPDEELLDALADIC 489
            L K++ E  C             + K G  +D++      +     PD    + L D  
Sbjct: 412 QLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGY 471

Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            +     KA+EI+  M  HGI P+   Y  +
Sbjct: 472 CKQRNMDKAIEILDTMLSHGITPDVITYNTL 502



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 115/502 (22%), Positives = 201/502 (40%), Gaps = 66/502 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR----------------VRK 44
           ML+ G  P +  ++ ++  L   G+    ES KLF  V+KR                 RK
Sbjct: 207 MLKQGICPDILTFNKLIHVLCKKGN--VQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 45  FSDPD-------IVSDS-KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF---GAKPDV 93
            +  +       IVS+   PD  +YN ++       K  K ++    +H+    G +P+ 
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLI---CGFCKHSKLVEAECYLHKMVNSGVEPNE 321

Query: 94  LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-Q 152
            TYN +I    +A        +L   +  G      T+ SL+      GD+  A  +  +
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE 381

Query: 153 AMREGRRDVC--------------KIIRELDLEDYSSENEGDDD--DDDEVFEKLLPNSI 196
           AM +G +                  +++ L L     E+    D    + V   L     
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGC 441

Query: 197 NPSSEPPL---LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
              +   L   + K   P+   + TL+ GY  +  +   + +L  M     +   PD +T
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTML---SHGITPDVIT 498

Query: 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313
           Y T+++ L KA  +D        M   G   N ITYNIL++ +C+  ++ +A EL +EM 
Sbjct: 499 YNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMK 558

Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT-----LMKAFA 368
               + PD+V+   LI G      S G L    E+        K SY+T     ++ AF 
Sbjct: 559 TRG-LTPDIVTLCTLICGLC----SNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFC 613

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                 +A K+F +M        D   + ++++ YC+ G ++ A   +      G  P+ 
Sbjct: 614 XKLNVSMAEKLFHKM-GGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSF 672

Query: 429 ATYGSLANGISLARKPGEALLL 450
            T G + N + +  +  EA+++
Sbjct: 673 TTCGKVLNCLCVTHRLSEAVVI 694



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +Y  +M+ Y  +G+V + V +     R +     P   +Y  +++ LV+ G   +A +V 
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVF---ERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVY 134

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
             M  IG+  +  T+ I +K +C   +   A  LL  M      E + VSY  +I GF  
Sbjct: 135 MRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQG-CEFNAVSYCAVISGFYK 193

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
            +    A   F+EM  +GI P  +++  L+         + + K+F ++++   V  ++ 
Sbjct: 194 ENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRG-VCPNLF 252

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            +N+ ++G CR G ++EA R++E +   G  P+V +Y +L  G     K  EA
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 198/458 (43%), Gaps = 35/458 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML SG  P +  ++T+++ L   G    V+  KL   ++  + ++       D+ P+   
Sbjct: 193 MLNSGIRPSLLTFNTMINILCKKGR---VQEAKL---IMSHIFRY-------DAYPNAFT 239

Query: 61  YNA-VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           Y + +L  C N      F  +FD+M + G  P+ +TY+ +I       R    + +LE +
Sbjct: 240 YTSLILGHCRNHNLDLAF-AMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEM 298

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++ GI     T  +     V   D   +   V+ + + ++  C      +++ +++   G
Sbjct: 299 VQKGIE---PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVP----NIQTFTALISG 351

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              D    FE      I       +L     P +  Y  L+     EGR      +   M
Sbjct: 352 LSRDGK--FE------IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                + S P   TY  ++      G + +A  +  +M + G   N ITYN L+ GYC+Q
Sbjct: 404 L---SHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             ++ A  LL  M  +  ++PD  +Y  LI GF        A + F  M   GI+P  ++
Sbjct: 461 GNLNNAMRLLEIMKGNG-LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT 519

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT ++  +   ++   A  +F +M+    +      +N+++ G+ +   + EA+    +M
Sbjct: 520 YTAIIDGYFNLAKVDDALALFWKMVESGNLPSS-QTYNVMISGFSKTNSISEAENFCGKM 578

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            + G  PNV TY S  +G+    + G A  ++ E+++R
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 192/464 (41%), Gaps = 64/464 (13%)

Query: 3   RSGYLPH-VKAWSTVVSRLAASGDDGPVESVKLFDVV-------VKRVRKF-SDPDIVSD 53
           R  +  H +  + ++++RL       P + V++  +        VKRV +F S+ +   D
Sbjct: 103 RRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYD 162

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
                 ++  +L              ++ +M   G +P +LT+N MI +  +  R     
Sbjct: 163 FGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAK 222

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            ++  I          T+ SL+  +    +L++A  +                       
Sbjct: 223 LIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM----------------------- 259

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                         F++++ +  +P             NS  Y+TL+ G  +EGR+ + +
Sbjct: 260 --------------FDRMVKDGCDP-------------NSVTYSTLINGLCSEGRLEEAM 292

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ML  M ++      P   TYT  + +L  AG    A ++L +M + G   N  T+  L+
Sbjct: 293 DMLEEMVQK---GIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALI 349

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G  +  + + A  L  +M  D  + P  V+YN LI+   +      A T F  M + G 
Sbjct: 350 SGLSRDGKFEIAIGLYHKMLADGLV-PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGS 408

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P+  +Y  ++K F L    + A  +FD+ML+      +++ +N L+ GYC+ G +  A 
Sbjct: 409 LPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGS-SPNVITYNTLIYGYCKQGNLNNAM 467

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           R++E MK NG  P+  TY  L +G S   K   A  L+  + E 
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  YT+L+ G+     +     M   M +   +   P+ VTY+T+++ L   G ++ A
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVK---DGCDPNSVTYSTLINGLCSEGRLEEA 291

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L EM + G+     TY I L   C      +A ELL +M     + P++ ++  LI 
Sbjct: 292 MDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCV-PNIQTFTALIS 350

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A+  +++M A G+ PT ++Y  L+    +  + + A  +F  ML    + 
Sbjct: 351 GLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLP 410

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
                +N +++ +C MG +++A  I ++M + G  PNV TY +L  G         A+ L
Sbjct: 411 -STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL 469

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            + +K                   LKPD      L     R      A  +   M EHGI
Sbjct: 470 LEIMKGN----------------GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 511 PPNKTKYKKI 520
            PN   Y  I
Sbjct: 514 SPNHVTYTAI 523



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 196/461 (42%), Gaps = 39/461 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+++ ++ ++S L+  G          F++ +    K     +V    P T  
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGK---------FEIAIGLYHKMLADGLV----PTTVT 379

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YNA++N     G+ +    +F  M   G+ P   TYN +IK  C     +  +V + +++
Sbjct: 380 YNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMV-IFDKM 438

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENE 178
           L+ G +  + T+ +L+  Y   G+L  A  +++ M+  G +       EL +  +S    
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTEL-ISGFS--RG 495

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G  +    +F  ++ + I             +PN   YT ++ GY N  +V D + +   
Sbjct: 496 GKLEHATSLFYGMMEHGI-------------SPNHVTYTAIIDGYFNLAKVDDALALFWK 542

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    ++ + P   TY  ++S   K  S+  A     +M + G+  N ITY   + G C+
Sbjct: 543 MV---ESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCR 599

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRARGIAPT 356
             +   A ++  EM +     P++ +Y+ LI G       + A        +   G  P 
Sbjct: 600 NGRTGLAFKIFHEM-EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +YTTL+K      +   A+++   M +      + +   +L+ G C+   VE A  I 
Sbjct: 659 VDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLI-GECKNLKVESALNIF 717

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             M   GF  +++ Y +L   +       EA  +++ + E+
Sbjct: 718 YSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEK 758



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 140/316 (44%), Gaps = 24/316 (7%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + FAP   +   ++K   NEG V    + L  +  + D        ++TT++  L K   
Sbjct: 125 RLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGY--TLCSFTTLLIQLGKFDM 182

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD-DAKIEPDVVSY 325
           +D AR +  +M   G+  + +T+N ++   C++ ++ +AK ++  +   DA   P+  +Y
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAY--PNAFTY 240

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             LI G     +   A   F+ M   G  P  ++Y+TL+       + + A  + +EM++
Sbjct: 241 TSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ 300

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              ++  +  + + +   C  G   EA  ++ +MK+ G  PN+ T+ +L +G+S   K  
Sbjct: 301 KG-IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD-ICVRAAFFRKALEIVAC 504
            A+ L+ ++                L   L P     +AL + +CV    F  A  I   
Sbjct: 360 IAIGLYHKM----------------LADGLVPTTVTYNALINQLCVEGR-FETAFTIFKW 402

Query: 505 MEEHGIPPNKTKYKKI 520
           M  HG  P+   Y +I
Sbjct: 403 MLSHGSLPSTQTYNEI 418


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 148/346 (42%), Gaps = 56/346 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    Y  L+ G    GR+ + + +L   R+  DN   PD VTYT+++  L K      A
Sbjct: 67  PTIATYNALLNGLCKMGRLEEAIDLL---RKIVDNGCTPDVVTYTSLIDGLGKKKRSFEA 123

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            ++  EM   G+  + + Y  L++G  Q  +I +A  + + M     + PDVV+ + +ID
Sbjct: 124 YKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV-PDVVTLSTMID 182

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLM--------------------KAFAL- 369
           G         A+  F  M ARG+AP ++ Y+ L+                    KAF   
Sbjct: 183 GLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 242

Query: 370 --------------SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
                         S     A   FDEML +   K D+  +N+L+ G+C+ G  + A  +
Sbjct: 243 DTITYNILIDGLCKSGDVAAARAFFDEML-EAGCKPDVYTYNILISGFCKAGNTDAACGV 301

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            + M  +   PNV TYG+L +G+   R+  +A L ++ +KER                  
Sbjct: 302 FDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKER----------------GC 345

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY 521
            PD  +  +L D   ++        +   ME  G+  ++T+ + I+
Sbjct: 346 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIF 391



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 171/401 (42%), Gaps = 56/401 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  A YNA+LN    +G+ ++ + L  ++ + G  PDV+TY  +I    +  R      +
Sbjct: 67  PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKL 126

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +   G+ L    + +L+   +  G +  A ++ + M                     
Sbjct: 127 FKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTS------------------- 167

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                        +  +P+ +  S                  T++ G    GR+   VR+
Sbjct: 168 -------------QGCVPDVVTLS------------------TMIDGLCKAGRIGAAVRI 196

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
             +M   E     P+ V Y+ ++  L KA  MD A ++LA+M +     + ITYNIL+ G
Sbjct: 197 FKSM---EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 253

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   +  A+    EM  +A  +PDV +YNILI GF    ++  A   F++M +   +P
Sbjct: 254 LCKSGDVAAARAFFDEML-EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSP 312

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ++Y TL+       Q   A+  +  M ++     D   ++ LV+G C+ G +E    +
Sbjct: 313 NVVTYGTLISGLCKRRQLTKASLYYQHM-KERGCPPDSFVYSSLVDGLCKSGKLEGGCML 371

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            + M+ +G   N  T   L   +  A +  EA+ L+  I++
Sbjct: 372 FDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRK 411



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 135/288 (46%), Gaps = 20/288 (6%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           ++ L+ G +  G +   ++     +    N    D  TYTT+V  L K   +  A  ++ 
Sbjct: 2   FSILINGLVKAGML---IQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALME 58

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           ++T  G      TYN LL G C+  ++++A +LLR++ D+    PDVV+Y  LIDG    
Sbjct: 59  KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKK 117

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             S  A   F EM +RG+A   + YT L++    + +   A+ V+  M     V  D+V 
Sbjct: 118 KRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVP-DVVT 176

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
            + +++G C+ G +  A RI + M+  G  PN   Y +L +G+  ARK   AL +  ++K
Sbjct: 177 LSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 236

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALA---DICVRAAFFRKALE 500
           +            +   P       L+D L    D+    AFF + LE
Sbjct: 237 K------------AFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLE 272



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 144/400 (36%), Gaps = 70/400 (17%)

Query: 29  VESVKLFDVVVKRVRKFSDPDIVSDSKP-----DTAAYNAVLNACANLGKPKKFLQLFDQ 83
           V    L D + K+ R F    +  +        DT  Y A++      GK  +   ++  
Sbjct: 105 VTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKT 164

Query: 84  MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
           M   G  PDV+T + MI    +A R    V + + +   G                    
Sbjct: 165 MTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG-------------------- 204

Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203
           L   E +  A+  G   +CK  R++D                   E L            
Sbjct: 205 LAPNEVVYSALIHG---LCK-ARKMDC----------------ALEMLAQ---------- 234

Query: 204 LLPKTFA-PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
            + K F  P++  Y  L+ G    G V+        M    +    PD  TY  ++S   
Sbjct: 235 -MKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEML---EAGCKPDVYTYNILISGFC 290

Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
           KAG+ D A  V  +M+      N +TY  L+ G C++ Q+ KA    + M +     PD 
Sbjct: 291 KAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERG-CPPDS 349

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT---LMKAFALSSQPKLANKV 379
             Y+ L+DG        G    F+EM   G+A ++        L KA  +     L N +
Sbjct: 350 FVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAI 409

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
             E +  P       A+N ++    + G V E + + + M
Sbjct: 410 RKEGMPHP------YAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 20/216 (9%)

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +++ILI+G +       A +   E    G      +YTT++   A + + + A  + +++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
             +      I  +N L+ G C+MG +EEA  ++ ++ +NG  P+V TY SL +G+   ++
Sbjct: 61  TANGCTPT-IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKR 119

Query: 444 PGEALLLWKEIKER-------CEVKK-EGVNADSDLPPP-----------LKPDEELLDA 484
             EA  L+KE+  R       C      G+     +P               PD   L  
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           + D   +A     A+ I   ME  G+ PN+  Y  +
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 215



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 121/334 (36%), Gaps = 71/334 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P V   ST++  L  +G  G   +V++F  +  R              P+   
Sbjct: 165 MTSQGCVPDVVTLSTMIDGLCKAGRIGA--AVRIFKSMEAR-----------GLAPNEVV 211

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
           Y+A+++      K    L++  QM +    PD +TYN++I  LC          F  + +
Sbjct: 212 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAF-FDEM 270

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           LE G    + T+  L++ +   G+ + A  +   M   R                     
Sbjct: 271 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR--------------------- 309

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                         +PN   Y TL+ G     +++        M
Sbjct: 310 -----------------------------CSPNVVTYGTLISGLCKRRQLTKASLYYQHM 340

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
           +   +    PD   Y+++V  L K+G ++    +  EM R GV AN  T   L+   C+ 
Sbjct: 341 K---ERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKA 396

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            ++D+A  L   +  +    P   +YN +I   I
Sbjct: 397 NRVDEAVSLFNAIRKEGMPHP--YAYNSIISALI 428


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 193/457 (42%), Gaps = 31/457 (6%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G LP +   ++++  L    +    ES+         V+K  D  I     PD   
Sbjct: 236 MMEQGVLPKILICNSIIKELCKMKEMDKAESI---------VQKMVDSGIA----PDLFT 282

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++         K  ++ +QM E G +P+ +TYN +I   + +   +  V V +++ 
Sbjct: 283 YSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMS 342

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
             G+   +    S + A    G    A+ I  +M  +G +         D+  YS+    
Sbjct: 343 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKP--------DIISYSTNASW 394

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                  V   +  N  N      +L K  APN  ++  L+  Y   G +   + +   M
Sbjct: 395 VCYWYVTVVWVMWHNIFNL-----MLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDM 449

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
              ++    PD VT+ TV+S+L + G +D A      M  IGVP +   Y  L++G C  
Sbjct: 450 ---QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNH 506

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++ KAKEL+ EM +     P V  ++ +I+        A      + M   G  P  ++
Sbjct: 507 GELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVT 566

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           + +LM+ + L    + A  + D M     ++ +   +  LV+GYC+ G +++A  +   M
Sbjct: 567 FNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM 625

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              G  P    Y  + +G+  AR+   A  ++ E+ E
Sbjct: 626 LHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 662



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 157/376 (41%), Gaps = 54/376 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   +N ++NA A  G   K + +F+ M   G  PD +T+  +I    R  R    +  
Sbjct: 421 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 480

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              ++++G+      +  L+      G+L  A+ ++  M    +D+              
Sbjct: 481 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMN--KDI-------------- 524

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                     PP       P  + +++++     EGRV++   +
Sbjct: 525 --------------------------PP-------PGVKYFSSIINNLCKEGRVAEGKDI 551

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M +       P+ VT+ +++      G+M+ A  +L  M  IG+  N   Y  L+ G
Sbjct: 552 MDMMVQ---TGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDG 608

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC+  +ID A  + R+M     ++P  V Y+I++ G      +  A   F+EM   G   
Sbjct: 609 YCKNGRIDDALTVFRDMLHKG-VKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTV 667

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           +  +Y  ++     ++    AN + +++     VK DI+ +N+++    ++G  +EAK +
Sbjct: 668 SIHTYGVVLGGLCRNNCTDEANMLLEKLFA-MNVKFDIITFNIVISAMFKVGRRQEAKEL 726

Query: 416 IERMKENGFYPNVATY 431
            + +   G  PN+ TY
Sbjct: 727 FDAISTYGLVPNIQTY 742



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 103/458 (22%), Positives = 190/458 (41%), Gaps = 81/458 (17%)

Query: 67  ACANLGKPKKFLQLFDQMHEFG----AKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           AC +   P   ++LF +M  +     + P + TYN++I    R  R  L + ++ R+L+ 
Sbjct: 148 ACGD--APALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKN 205

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
           G+                 G  + + +++                     Y    +G+ D
Sbjct: 206 GL-----------------GPDDFSYSLI---------------------YGFVKDGEVD 227

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
               +F +++        E  +LPK    NS I   L K  M E   ++++     +++ 
Sbjct: 228 KAHCLFLEMM--------EQGVLPKILICNS-IIKELCK--MKEMDKAESI-----VQKM 271

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
            D+   PD  TY+ ++  L K+ +MD+A +VL +M   G   N ITYN L+ GY      
Sbjct: 272 VDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMW 331

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           +++  + ++M+    I P V + N  I        +  A   F+ M  +G  P  ISY+T
Sbjct: 332 NESVRVFKQMSSCGVI-PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 390

Query: 363 ---LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
               +  + ++    + + +F+ ML    +  +   +N+L+  Y R G++++A  I E M
Sbjct: 391 NASWVCYWYVTVVWVMWHNIFNLMLTKG-IAPNKHVFNILINAYARCGMMDKAMLIFEDM 449

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
           +  G  P+  T+ ++ + +    +  +AL                 N   D+  P  P E
Sbjct: 450 QNKGMIPDTVTFATVISSLCRIGRLDDAL--------------HKFNHMVDIGVP--PSE 493

Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            +   L   C       KA E+++ M    IPP   KY
Sbjct: 494 AVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 531



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 115/564 (20%), Positives = 213/564 (37%), Gaps = 99/564 (17%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+  D P  +++LF    KR+ +++ P     S P    YN +++    + +P   L +
Sbjct: 146 SAACGDAPALAIELF----KRMDRWACP---RHSPPTIHTYNILIDCYRRVHRPDLGLAI 198

Query: 81  FDQMHEFGAKPDVLTYNVMIKLC--ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
             ++ + G  PD  +Y+++          + H L      ++E G+   +    S++   
Sbjct: 199 VGRLLKNGLGPDDFSYSLIYGFVKDGEVDKAHCLFL---EMMEQGVLPKILICNSIIKEL 255

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG-----DDDDDDEVFEKLLP 193
               +++ AE+IVQ M +            DL  YS   +G       D  + V E+++ 
Sbjct: 256 CKMKEMDKAESIVQKMVDSG-------IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 308

Query: 194 NSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253
                            PNS  Y +L+ GY   G  +++VR+    ++       P    
Sbjct: 309 AGTR-------------PNSITYNSLIHGYSISGMWNESVRVF---KQMSSCGVIPTVDN 352

Query: 254 YTTVVSALVKAGSMDRARQVLAEMT----------------------------------- 278
             + + AL K G  + A+ +   M                                    
Sbjct: 353 CNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFN 412

Query: 279 ---RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
                G+  N+  +NIL+  Y +   +DKA  +  +M +   I PD V++  +I     I
Sbjct: 413 LMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI-PDTVTFATVISSLCRI 471

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                AL  FN M   G+ P++  Y  L++      +   A ++  EM+        +  
Sbjct: 472 GRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 531

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           ++ ++   C+ G V E K I++ M + G  PNV T+ SL  G  L     EA  L     
Sbjct: 532 FSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL---- 587

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
                       D+     ++P+  +   L D   +      AL +   M   G+ P   
Sbjct: 588 ------------DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSV 635

Query: 516 KYKKIYVEMHSRMFTSKHASQARQ 539
            Y  I   +H  +F ++  + A++
Sbjct: 636 LYSII---LHG-LFQARRTTAAKK 655


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 197/459 (42%), Gaps = 37/459 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ GY P    ++T++  L   G  G  E+++LFD +                +PD   
Sbjct: 115 ILKLGYQPSTATFTTLIRGLCVEGKIG--EALQLFDKMTGE-----------GFQPDVLT 161

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCA-RASRKHLLVFVLER 118
           Y  ++N    +G     ++    M +   +P V+ Y+ +I  LC  R   + L +F    
Sbjct: 162 YGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLF--SD 219

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
           +L  GI+    T+ SL+      G  + A  +  AM   R+ +   +    L D   + E
Sbjct: 220 MLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIH-RKIMPDQLTFNTLVDALCK-E 277

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G       V + ++ + + P             +   Y +LM G+     +  TV +   
Sbjct: 278 GMVVKAHYVVDVMIQSDLKP-------------DVVTYNSLMDGHCLRSEMGKTVNVFDT 324

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M R+      P  ++YTT+++   K   MD+A  +  EM++ G+  + +TYN L+ G C 
Sbjct: 325 MVRK---GCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCH 381

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
             ++  A  L  EM    +I PD+V+Y IL D        A A+     +    + P   
Sbjct: 382 VGRLRDAIALFHEMVVYGQI-PDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIH 440

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            Y+ +M     + + + A  +F + L    +  D+  + +++ G C+ GL+ EA ++   
Sbjct: 441 IYSIVMDGMCRAGELEAARDLFSK-LSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGE 499

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           M ENG  PN  TY  +  G     +   A+ L++E+  R
Sbjct: 500 MDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSR 538



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 184/496 (37%), Gaps = 104/496 (20%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L +   +      L L+ QM  FG   +  T N++I      +R      V
Sbjct: 52  PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 111

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  IL++G      TF +L+                       R +C             
Sbjct: 112 LGDILKLGYQPSTATFTTLI-----------------------RGLCV------------ 136

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG   +  ++F+K+                 F P+   Y TL+ G    G  S  +R 
Sbjct: 137 --EGKIGEALQLFDKMTGEG-------------FQPDVLTYGTLINGLCKVGNTSTAIRF 181

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L   R  E     P  V Y+T++ +L K   +  A  + ++M   G+  N  TY+ L+ G
Sbjct: 182 L---RSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHG 238

Query: 296 YCQQLQIDKAKELLREMAD----------------------------------DAKIEPD 321
            C      +A  L   M                                     + ++PD
Sbjct: 239 LCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPD 298

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
           VV+YN L+DG  L  +    +  F+ M  +G  P+ ISYTTL+  +        A  +F+
Sbjct: 299 VVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFE 358

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           EM +   +  D V +N L+ G C +G + +A  +   M   G  P++ TY  L + +   
Sbjct: 359 EMSQQGLIP-DTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKN 417

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
            +  EA++L K I        EG N D        PD  +   + D   RA     A ++
Sbjct: 418 HRLAEAMVLLKVI--------EGTNLD--------PDIHIYSIVMDGMCRAGELEAARDL 461

Query: 502 VACMEEHGIPPNKTKY 517
            + +   G+ P+   Y
Sbjct: 462 FSKLSSKGLHPDVRTY 477



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 135/337 (40%), Gaps = 34/337 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+    +P    ++T+V  L   G             +V +     D  I SD KPD   
Sbjct: 255 MIHRKIMPDQLTFNTLVDALCKEG-------------MVVKAHYVVDVMIQSDLKPDVVT 301

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN++++      +  K + +FD M   G  P V++Y  +I    +       + + E + 
Sbjct: 302 YNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMS 361

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G+     T+ +L+      G L  A  +   M      +  ++    L DY  +N   
Sbjct: 362 QQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVV-YGQIPDLVTYRILFDYLCKNH-- 418

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
              +  V  K++  +               P+  IY+ +M G    G +     +   + 
Sbjct: 419 RLAEAMVLLKVIEGT------------NLDPDIHIYSIVMDGMCRAGELEAARDLFSKLS 466

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +     HPD  TYT +++ L + G +  A ++  EM   G   N  TYN++ +G+ +  
Sbjct: 467 SK---GLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNN 523

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
           +  +A +L +EM        DV +  +L++  +L DD
Sbjct: 524 ETLRAIQLFQEMLSRG-FSIDVSTTTLLVE--MLSDD 557


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 182/399 (45%), Gaps = 68/399 (17%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
           +L  +M   G KPDV+ Y ++I    + S       +L ++ +MG+ L   +  S+V  Y
Sbjct: 242 KLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGY 301

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE--NEGDDDDDDEVFEKLLPNSI 196
              G  E A  +++                    + S+   +G+     +VF+ +     
Sbjct: 302 CKVGKSEEAMDVLEVFNLSPNIFV-------FNSFISKLCTDGNMLKAAKVFQDM----- 349

Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
               E  L+P  F+     YTT+M GY     +S+ ++ LG M ++      P   TYT 
Sbjct: 350 ---CEMGLIPDCFS-----YTTMMAGYCKVKDISNALKYLGKMLKR---GIRPSVATYTL 398

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           ++ +  K G+M+ A  +   M   G+  + ++YN L+ GY ++  + KA ELL  M   A
Sbjct: 399 LIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELL-SMMRSA 457

Query: 317 KIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA----- 368
            + PD+V+YNILI G I   L++++   L   +E+  RG +P  +++T ++  F+     
Sbjct: 458 GVSPDLVTYNILIHGLIKRGLVNEAKDIL---DELTRRGFSPDVVTFTNIIGGFSNKGNF 514

Query: 369 --------LSSQPKL----------------------ANKVFDEMLRDPRVKVDIVAWNM 398
                     S+  L                      AN +F +ML D  +K D++ +N 
Sbjct: 515 EEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKML-DAGLKADVILYNS 573

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           L+ G+C +G +++A  ++  M E+G  PN  T+ +L  G
Sbjct: 574 LIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLG 612



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 129/292 (44%), Gaps = 23/292 (7%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+   + + +S L   G+M +A +V  +M  +G+  +  +Y  ++ GYC+   I  A + 
Sbjct: 321 PNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKY 380

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
           L +M     I P V +Y +LID      +   A   F  M   G+ P  +SY TLM  + 
Sbjct: 381 LGKMLKRG-IRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYG 439

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
                + A ++   M+R   V  D+V +N+L+ G  + GLV EAK I++ +   GF P+V
Sbjct: 440 KKGHLQKAFELL-SMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDV 498

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKE--------------------RCEVKKEGVNAD 468
            T+ ++  G S      EA LL+  + E                    RC + +  V   
Sbjct: 499 VTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRC-MAEANVLFH 557

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L   LK D  L ++L            A  +V+ M EHGI PN   +  +
Sbjct: 558 KMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHAL 609



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 130/336 (38%), Gaps = 53/336 (15%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +Y  L+  Y+ E      ++++  MR        P      +++ AL+++  ++ A   L
Sbjct: 153 VYGMLVNCYVKENMTQVALKLICKMRHLN---IFPLIGVCNSLLKALLESEQLNLAWDFL 209

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM   G+  N    ++ + GYC Q  ID   +LL EM     I+PDVV+Y I+ID    
Sbjct: 210 KEMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEM-KYLGIKPDVVAYTIVIDSLCK 268

Query: 335 IDDSAGALTFFNEMRARGI--------------------------------APTKISYTT 362
           +     A +   +M   G+                                +P    + +
Sbjct: 269 MSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNS 328

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
            +           A KVF +M     +  D  ++  ++ GYC++  +  A + + +M + 
Sbjct: 329 FISKLCTDGNMLKAAKVFQDMCEMGLIP-DCFSYTTMMAGYCKVKDISNALKYLGKMLKR 387

Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
           G  P+VATY  L   I    KPG       E+ E    +         +   L PD    
Sbjct: 388 GIRPSVATYTLL---IDSCCKPGNM-----EMAEYLFQRM--------ITEGLVPDVVSY 431

Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
           + L +   +    +KA E+++ M   G+ P+   Y 
Sbjct: 432 NTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYN 467


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 198/458 (43%), Gaps = 35/458 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML SG  P +  ++T+++ L   G    V+  KL   ++  + ++       D+ P+   
Sbjct: 193 MLNSGIRPSLLTFNTMINILCKKGR---VQEAKL---IMSHIFRY-------DAYPNAFT 239

Query: 61  YNA-VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           Y + +L  C N      F  +FD+M + G  P+ +TY+ +I       R    + +LE +
Sbjct: 240 YTSLILGHCRNHNLDLAF-AMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEM 298

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++ GI     T  +     V   D   +   V+ + + ++  C      +++ +++   G
Sbjct: 299 VQKGIE---PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVP----NIQTFTALISG 351

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              D    FE      I       +L     P +  Y  L+     EGR      +   M
Sbjct: 352 LSRDGK--FE------IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                + S P   TY  ++      G + +A  +  +M + G   N ITYN L+ GYC+Q
Sbjct: 404 L---SHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             ++ A  LL  M  +  ++PD  +Y  LI GF        A + F  M   GI+P  ++
Sbjct: 461 GNLNNAMRLLEIMKGNG-LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT 519

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           YT ++  +   ++   A  +F +M+    +      +N+++ G+ +   + EA+    +M
Sbjct: 520 YTAIIDGYFNLAKVDDALALFWKMVESGNLPSS-QTYNVMISGFSKTNSISEAENFCGKM 578

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            + G  PNV TY S  +G+    + G A  ++ E+++R
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 192/464 (41%), Gaps = 64/464 (13%)

Query: 3   RSGYLPH-VKAWSTVVSRLAASGDDGPVESVKLFDVV-------VKRVRKF-SDPDIVSD 53
           R  +  H +  + ++++RL       P + V++  +        VKRV +F S+ +   D
Sbjct: 103 RRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYD 162

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
                 ++  +L              ++ +M   G +P +LT+N MI +  +  R     
Sbjct: 163 FGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAK 222

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            ++  I          T+ SL+  +    +L++A  +                       
Sbjct: 223 LIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM----------------------- 259

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                         F++++ +  +P             NS  Y+TL+ G  +EGR+ + +
Sbjct: 260 --------------FDRMVKDGCDP-------------NSVTYSTLINGLCSEGRLEEAM 292

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            ML  M ++      P   TYT  + +L  AG    A ++L +M + G   N  T+  L+
Sbjct: 293 DMLEEMVQK---GIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALI 349

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G  +  + + A  L  +M  D  + P  V+YN LI+   +      A T F  M + G 
Sbjct: 350 SGLSRDGKFEIAIGLYHKMLADGLV-PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGS 408

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P+  +Y  ++K F L    + A  +FD+ML+      +++ +N L+ GYC+ G +  A 
Sbjct: 409 LPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGS-SPNVITYNTLIYGYCKQGNLNNAM 467

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           R++E MK NG  P+  TY  L +G S   K   A  L+  + E 
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 21/310 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  YT+L+ G+     +     M   M +   +   P+ VTY+T+++ L   G ++ A
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVK---DGCDPNSVTYSTLINGLCSEGRLEEA 291

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L EM + G+     TY I L   C      +A ELL +M     + P++ ++  LI 
Sbjct: 292 MDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCV-PNIQTFTALIS 350

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A+  +++M A G+ PT ++Y  L+    +  + + A  +F  ML    + 
Sbjct: 351 GLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLP 410

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
                +N +++ +C MG +++A  I ++M + G  PNV TY +L  G         A+ L
Sbjct: 411 -STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL 469

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            + +K                   LKPD      L     R      A  +   M EHGI
Sbjct: 470 LEIMKGN----------------GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 511 PPNKTKYKKI 520
            PN   Y  I
Sbjct: 514 SPNHVTYTAI 523



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 196/461 (42%), Gaps = 39/461 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G +P+++ ++ ++S L+  G          F++ +    K     +V    P T  
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGK---------FEIAIGLYHKMLADGLV----PTTVT 379

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           YNA++N     G+ +    +F  M   G+ P   TYN +IK  C     +  +V + +++
Sbjct: 380 YNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMV-IFDKM 438

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENE 178
           L+ G +  + T+ +L+  Y   G+L  A  +++ M+  G +       EL +  +S    
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTEL-ISGFS--RG 495

Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
           G  +    +F  ++ + I             +PN   YT ++ GY N  +V D + +   
Sbjct: 496 GKLEHATSLFYGMMEHGI-------------SPNHVTYTAIIDGYFNLAKVDDALALFWK 542

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           M    ++ + P   TY  ++S   K  S+  A     +M + G+  N ITY   + G C+
Sbjct: 543 MV---ESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCR 599

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRARGIAPT 356
             +   A ++  EM +     P++ +Y+ LI G       + A        +   G  P 
Sbjct: 600 NGRTGLAFKIFHEM-EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +YTTL+K      +   A+++   M +      + +   +L+ G C+   VE A  I 
Sbjct: 659 VDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLI-GECKNLKVESALNIF 717

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             M   GF  +++ Y +L   +       EA  +++ + E+
Sbjct: 718 YSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEK 758



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 140/316 (44%), Gaps = 24/316 (7%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           + FAP   +   ++K   NEG V    + L  +  + D        ++TT++  L K   
Sbjct: 125 RLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGY--TLCSFTTLLIQLGKFDM 182

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD-DAKIEPDVVSY 325
           +D AR +  +M   G+  + +T+N ++   C++ ++ +AK ++  +   DA   P+  +Y
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAY--PNAFTY 240

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             LI G     +   A   F+ M   G  P  ++Y+TL+       + + A  + +EM++
Sbjct: 241 TSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ 300

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
              ++  +  + + +   C  G   EA  ++ +MK+ G  PN+ T+ +L +G+S   K  
Sbjct: 301 KG-IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD-ICVRAAFFRKALEIVAC 504
            A+ L+ ++                L   L P     +AL + +CV    F  A  I   
Sbjct: 360 IAIGLYHKM----------------LADGLVPTTVTYNALINQLCVEGR-FETAFTIFKW 402

Query: 505 MEEHGIPPNKTKYKKI 520
           M  HG  P+   Y +I
Sbjct: 403 MLSHGSLPSTQTYNEI 418


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 184/404 (45%), Gaps = 61/404 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    ++ +L A A L K +  + LF  +   G   D+ +++ +I    R SR  L +  
Sbjct: 71  PSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSC 130

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +++++G    + TF SLV  +     ++ A ++V                        
Sbjct: 131 LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVD----------------------- 167

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                       ++   + PN  IY T++   + E R  DT   
Sbjct: 168 ---------------------------QIVGLGYEPNVVIYNTIIDS-LCENRQVDTA-- 197

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  +   E     PD +TY ++++ L  +G    + ++L++M R+G+  + IT++ ++  
Sbjct: 198 LDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDV 257

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARG 352
           + ++ Q+ +AK+   EM   + ++P++V+YN LI+G     L+D++   L F   M ++G
Sbjct: 258 FGKEGQLLEAKKQYDEMIQRS-VDPNIVTYNSLINGLCIHGLLDEAKKVLNF---MVSKG 313

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  ++Y TL+  +  S +   A K+   M  D  V  D   +N L +GYC+ G    A
Sbjct: 314 FFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDG-VDGDTFTYNTLYQGYCQAGQFNAA 372

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           ++++ RM   G  P++ T+  L +G+    K  +AL+  +++++
Sbjct: 373 EKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQK 416



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 11/254 (4%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           ++TL+  +    R+S  +  LG M +       P  VT+ ++V+       +  A  ++ 
Sbjct: 111 FSTLIDCFCRCSRLSLALSCLGKMMKL---GFEPSIVTFGSLVNGFCHVNRIQEAMSLVD 167

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           ++  +G   N + YN ++   C+  Q+D A ++L  M +   I PDV++YN LI      
Sbjct: 168 QIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHM-EKMGIRPDVITYNSLITRLFHS 226

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
                +    ++M   GI P  I+++ ++  F    Q   A K +DEM++   V  +IV 
Sbjct: 227 GKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS-VDPNIVT 285

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +N L+ G C  GL++EAK+++  M   GF+PN  TY +L NG   +++  +A+      K
Sbjct: 286 YNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAM------K 339

Query: 456 ERCEVKKEGVNADS 469
             C +  +GV+ D+
Sbjct: 340 ILCVMSHDGVDGDT 353



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 180/404 (44%), Gaps = 59/404 (14%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P    + +++N   ++ + ++ + L DQ+   G +P+V+ YN +I       +    + 
Sbjct: 140 EPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALD 199

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ-AMREGRR-DVCKIIRELDLED 172
           VL  + +MGI   + T+ SL+      G   ++  I+   MR G   DV      +D+  
Sbjct: 200 VLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFG 259

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
                EG   +  + +++++  S++P             N   Y +L+ G    G + + 
Sbjct: 260 ----KEGQLLEAKKQYDEMIQRSVDP-------------NIVTYNSLINGLCIHGLLDEA 302

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
            ++L  M  +      P+ VTY T+V+   K+  +D A ++L  M+  GV  +  TYN L
Sbjct: 303 KKVLNFMVSK---GFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTL 359

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
            +GYCQ  Q + A+++L  M     + PD+ ++N+L+DG                     
Sbjct: 360 YQGYCQAGQFNAAEKVLARMV-SCGVLPDIYTFNMLLDGL-------------------- 398

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
                  +  + KA       KL      E L+     V I+ +N++++G C+   VE+A
Sbjct: 399 -----CEHGKIEKALV-----KL------EDLQKSETVVGIITYNIIIKGMCKANKVEDA 442

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             +   +   G  P+V TY ++  G+   R   EA  L++++K+
Sbjct: 443 WYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMKK 486



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 21/191 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           ALT F +M      P+ + ++ L+ A A   + +    +F   +    +  D+ +++ L+
Sbjct: 57  ALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRH-IEILGISHDLYSFSTLI 115

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           + +CR   +  A   + +M + GF P++ T+GSL NG     +  EA+ L  +I      
Sbjct: 116 DCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQI------ 169

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                     +    +P+  + + + D          AL+++  ME+ GI P+   Y  +
Sbjct: 170 ----------VGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSL 219

Query: 521 YVEMHSRMFTS 531
                +R+F S
Sbjct: 220 I----TRLFHS 226



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 60/320 (18%), Positives = 120/320 (37%), Gaps = 66/320 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+R G  P V  +S ++      G    +E+ K +D +++R     DP+IV+        
Sbjct: 239 MMRMGIHPDVITFSAMIDVFGKEGQ--LLEAKKQYDEMIQRS---VDPNIVT-------- 285

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN+++N     G   +  ++ + M   G  P+ +TYN ++    ++ R    + +L  + 
Sbjct: 286 YNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMS 345

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+     T+ +L   Y   G    AE ++  M       C ++               
Sbjct: 346 HDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVS-----CGVL--------------- 385

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P+   +  L+ G    G++   +  L  ++
Sbjct: 386 ------------------------------PDIYTFNMLLDGLCEHGKIEKALVKLEDLQ 415

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           + E        +TY  ++  + KA  ++ A  +   +   GV  + ITY  ++ G  ++ 
Sbjct: 416 KSETVVG---IITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKR 472

Query: 301 QIDKAKELLREMADDAKIEP 320
              +A EL R+M  D  + P
Sbjct: 473 LWLEAHELYRKMKKDDGLMP 492


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 192/443 (43%), Gaps = 42/443 (9%)

Query: 50  IVSDSKP----DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105
           I++D K     D  AY  V+N     G+  K   LFD M + G  PDV+TY+ +I   ++
Sbjct: 196 IMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSK 255

Query: 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKI 164
                    V  R+++ G+      + SLV  Y   G  + A  I + M R G      +
Sbjct: 256 TQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEP--DV 313

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
           +    L DY  +N G   +  ++F+              L+ +   P+S  Y TL+ GY 
Sbjct: 314 VTYTALMDYLCKN-GKSTEARKIFDS-------------LVKRGHKPDSTTYGTLLHGYA 359

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
            EG + +   +L  M ++     H  H+ +  ++ A  K   +D A  V + M + G+  
Sbjct: 360 TEGALVEMHDLLDLMMKKGMQLGH--HI-FNMIMGAYAKHNKVDEALLVFSNMRQQGLNP 416

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID--DSAGAL 342
           + + Y  +L   C   ++D A      +  +  + P++V +  LI G    D  D    L
Sbjct: 417 DIVNYGTVLDILCTAGRVDDALSQFNSLKSEG-LAPNIVVFTTLIHGLCTCDKWDKVEEL 475

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
            F  EM  RGI    I +  +M       +   A  +FD M+R   ++ +   +N L++G
Sbjct: 476 AF--EMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVR-IGIEPNTNTYNTLIDG 532

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
           YC  G ++EA +++  M  NG  P+  TY ++ NG S   +  + L L +E+  +     
Sbjct: 533 YCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGK----- 587

Query: 463 EGVNADSDLPPPLKPDEELLDAL 485
            GVN      P +   E LL  L
Sbjct: 588 -GVN------PGIVTYEMLLQGL 603



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 184/419 (43%), Gaps = 33/419 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P V  +S+++S L+ +      ++ ++F  +VK           +   PD   
Sbjct: 234 MLDRGPSPDVVTYSSIISALSKT--QAMDKATQVFTRMVK-----------NGVMPDCIM 280

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++   + GKPK+ + +F +M   G +PDV+TY  ++    +  +      + + ++
Sbjct: 281 YTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLV 340

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G     TT+ +L+  Y   G L     ++  M +    +   I  + +  Y+  N+  
Sbjct: 341 KRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNK-- 398

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D+   VF  +    +NP                 Y T++      GRV D +    +++
Sbjct: 399 VDEALLVFSNMRQQGLNPDIVN-------------YGTVLDILCTAGRVDDALSQFNSLK 445

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+ V +TT++  L      D+  ++  EM   G+  + I +N ++   C++ 
Sbjct: 446 SE---GLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKG 502

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +AK L   M     IEP+  +YN LIDG+ L      A+     M   G+ P+ ++Y
Sbjct: 503 RVIEAKNLFDLMV-RIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTY 561

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
            T++  ++ + + +    +  EM     V   IV + ML++G  + G    AK +  RM
Sbjct: 562 NTIINGYSQNGRIEDGLTLLREM-DGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 619



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 182/419 (43%), Gaps = 55/419 (13%)

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC-ARASRKHLLVFVLERILEMGIT 125
           C   G+  +   +  +M E G KPD+ +Y +++K LC  + S++ L +  +    +    
Sbjct: 146 CTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCP 205

Query: 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185
           L +  + +++   +  G L+ A ++  AM + R     ++    +    S+ +   D   
Sbjct: 206 LDVVAYTTVINGLLREGQLDKAYSLFDAMLD-RGPSPDVVTYSSIISALSKTQA-MDKAT 263

Query: 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
           +VF +++ N +              P+  +YT+L+ GY + G+  + + +   M R    
Sbjct: 264 QVFTRMVKNGV-------------MPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRH--- 307

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
              PD VTYT ++  L K G    AR++   + + G   +  TY  LL GY  +  + + 
Sbjct: 308 GVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEM 367

Query: 306 KELLREM------------------------ADDA----------KIEPDVVSYNILIDG 331
            +LL  M                         D+A           + PD+V+Y  ++D 
Sbjct: 368 HDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDI 427

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                    AL+ FN +++ G+AP  + +TTL+       +     ++  EM+ D  + +
Sbjct: 428 LCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMI-DRGICL 486

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           D + +N ++   C+ G V EAK + + M   G  PN  TY +L +G  L  K  EA+ L
Sbjct: 487 DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 545



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 2/195 (1%)

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP-DV 322
            G   R   VL  M  +G   +  +Y ILLKG C      +A +LL  MAD     P DV
Sbjct: 149 GGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDV 208

Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
           V+Y  +I+G +       A + F+ M  RG +P  ++Y++++ A + +     A +VF  
Sbjct: 209 VAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTR 268

Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
           M+++  V  D + +  LV GYC  G  +EA  I ++M  +G  P+V TY +L + +    
Sbjct: 269 MVKNG-VMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNG 327

Query: 443 KPGEALLLWKEIKER 457
           K  EA  ++  + +R
Sbjct: 328 KSTEARKIFDSLVKR 342


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 187/432 (43%), Gaps = 38/432 (8%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  AY  V+N     G+  K   LFD M + G  PDV+TY+ +I   ++         V 
Sbjct: 206 DVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVF 265

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSS 175
            R+++ G+      + SLV  Y   G  + A  I + M R G      ++    L DY  
Sbjct: 266 TRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEP--DVVTYTALMDYLC 323

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           +N G   +  ++F+              L+ +   P+S  Y TL+ GY  EG + +   +
Sbjct: 324 KN-GKSTEARKIFDS-------------LVKRGHKPDSTTYGTLLHGYATEGALVEMHDL 369

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M ++     H  H+ +  ++ A  K   +D A  V + M + G+  + + Y  +L  
Sbjct: 370 LDLMMKKGMQLGH--HI-FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDI 426

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRARGI 353
            C   ++D A      +  +  + P++V +  LI G    D  D    L F  EM  RGI
Sbjct: 427 LCTAGRVDDALSQFNSLKSEG-LAPNIVVFTTLIHGLCTCDKWDKVEELAF--EMIDRGI 483

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
               I +  +M       +   A  +FD M+R   ++ +   +N L++GYC  G ++EA 
Sbjct: 484 CLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVR-IGIEPNTNTYNTLIDGYCLDGKMDEAM 542

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
           +++  M  NG  P+  TY ++ NG S   +  + L L +E+  +      GVN      P
Sbjct: 543 KLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGK------GVN------P 590

Query: 474 PLKPDEELLDAL 485
            +   E LL  L
Sbjct: 591 GIVTYEMLLQGL 602



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 174/406 (42%), Gaps = 54/406 (13%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKH 110
           + + P+ A Y  V+  C  LG+         ++   G +   + ++ ++K LC R     
Sbjct: 93  TSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSD 152

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
            +  VL R+ E+G   C     S      G  D + ++                 + LDL
Sbjct: 153 AMDIVLRRMPELG---CKPDLFSYTILLKGLCDDKTSQ-----------------QALDL 192

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
               ++++G                       PL       +   YTT++ G + EG++ 
Sbjct: 193 LHIMADHKG---------------------RCPL-------DVVAYTTVINGLLREGQLD 224

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
               +  AM    D    PD VTY++++SAL K  +MD+A QV   M + GV  + I Y 
Sbjct: 225 KAYSLFDAML---DRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYT 281

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            L+ GYC   +  +A  + ++M     +EPDVV+Y  L+D       S  A   F+ +  
Sbjct: 282 SLVHGYCSSGKPKEAIGIFKKMCRHG-VEPDVVTYTALMDYLCKNGKSTEARKIFDSLVK 340

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           RG  P   +Y TL+  +A        + + D M++   +++    +NM++  Y +   V+
Sbjct: 341 RGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKG-MQLGHHIFNMIMGAYAKHNKVD 399

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           EA  +   M++ G  P++  YG++ + +  A +  +AL  +  +K 
Sbjct: 400 EALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKS 445



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 184/419 (43%), Gaps = 33/419 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML  G  P V  +S+++S L+ +      ++ ++F  +VK           +   PD   
Sbjct: 233 MLDRGPSPDVVTYSSIISALSKT--QAMDKATQVFTRMVK-----------NGVMPDCIM 279

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++++   + GKPK+ + +F +M   G +PDV+TY  ++    +  +      + + ++
Sbjct: 280 YTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLV 339

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G     TT+ +L+  Y   G L     ++  M +    +   I  + +  Y+  N+  
Sbjct: 340 KRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNK-- 397

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D+   VF  +    +NP                 Y T++      GRV D +    +++
Sbjct: 398 VDEALLVFSNMRQQGLNPDIVN-------------YGTVLDILCTAGRVDDALSQFNSLK 444

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            +      P+ V +TT++  L      D+  ++  EM   G+  + I +N ++   C++ 
Sbjct: 445 SE---GLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKG 501

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           ++ +AK L   M     IEP+  +YN LIDG+ L      A+     M   G+ P+ ++Y
Sbjct: 502 RVIEAKNLFDLMV-RIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTY 560

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
            T++  ++ + + +    +  EM     V   IV + ML++G  + G    AK +  RM
Sbjct: 561 NTIINGYSQNGRIEDGLTLLREM-DGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 618



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 30/305 (9%)

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           + +   M R    ++ P+  TY  V+    + G +D A   +  +   G+  + I ++ L
Sbjct: 81  ISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPL 140

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-AR 351
           LKG C + +   A +++     +   +PD+ SY IL+ G      S  AL   + M   +
Sbjct: 141 LKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHK 200

Query: 352 GIAPTK-ISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKVDIVAWNMLVEGYCRMGLV 409
           G  P   ++YTT++       Q   A  +FD ML R P    D+V ++ ++    +   +
Sbjct: 201 GRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGP--SPDVVTYSSIISALSKTQAM 258

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           ++A ++  RM +NG  P+   Y SL +G   + KP EA+ ++K++   C   + GV    
Sbjct: 259 DKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKM---C---RHGV---- 308

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI--------- 520
                 +PD     AL D   +     +A +I   + + G  P+ T Y  +         
Sbjct: 309 ------EPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGA 362

Query: 521 YVEMH 525
            VEMH
Sbjct: 363 LVEMH 367


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 190/426 (44%), Gaps = 46/426 (10%)

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
           S   PD + Y+A++       + +K L L  +M E G  PD+   + +I  C+     + 
Sbjct: 332 SGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYR 391

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
           L+   ER+ ++     +  + S++   V    ++ A  +++AM                 
Sbjct: 392 LI--EERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAM----------------- 432

Query: 172 DYSSENEGDDDDDDEVF---EKLLPNSINPSSEPPLLPKT-----------------FAP 211
             + +N  D+ + ++ F   E + P++ + S     L  T                    
Sbjct: 433 --TGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQ 490

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N  +Y  L+    N  R+ +   +L  M+    +   P   T+ ++   L +   +  A 
Sbjct: 491 NVLLYNNLIDKLSNSNRLEECYLLLKEMK---GSGFRPTQFTHNSIFGCLCRREDVTGAL 547

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            ++ EM   G       Y +L+K  C++ +  +A   L EM  +  + PD+V+Y+  IDG
Sbjct: 548 DMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFL-PDIVAYSAAIDG 606

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           F+ I     AL  F ++ ARG  P  ++Y TL+  F    +   A+ + DEM+    V  
Sbjct: 607 FVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVP- 665

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
            +V +N+L++G+C+ G +++A   + RM      PNV TY +L +G+  A +P +A+ LW
Sbjct: 666 SVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLW 725

Query: 452 KEIKER 457
            E++ +
Sbjct: 726 NEMRGK 731



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 162/378 (42%), Gaps = 31/378 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PDT +++ V++   N GK    L LF  M   G K +VL YN +I   + ++R      
Sbjct: 454 RPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYL 513

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCK----IIRELD 169
           +L+ +   G      T  S+        D+  A  +V+ MR  G     K    ++++L 
Sbjct: 514 LLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLC 573

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
               S+E                  + N  +E  ++ + F P+   Y+  + G++   ++
Sbjct: 574 KRKRSAE------------------ACNFLAE--MVREGFLPDIVAYSAAIDGFV---KI 610

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
               + L   R        PD V Y T+++   K   +  A  +L EM   G+  + +TY
Sbjct: 611 KAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTY 670

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N+L+ G+C+   ID+A   L  M    + EP+V++Y  LIDG         A+  +NEMR
Sbjct: 671 NLLIDGWCKNGDIDQAFHCLSRMVGKER-EPNVITYTTLIDGLCNAGRPDDAIHLWNEMR 729

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            +G +P +IS+  L+        P  A   F EM    R   D + +  L+  +      
Sbjct: 730 GKGCSPNRISFIALIHGLCKCGWPDAALLYFREM--GERETPDTIVYVALITSFISNKNP 787

Query: 410 EEAKRIIERMKENGFYPN 427
             A  I++ M   G +P+
Sbjct: 788 TLAFEILKEMVAKGKFPD 805



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 95/182 (52%), Gaps = 4/182 (2%)

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M R+ VP N  ++N LL+   +   ID  +  L+EM D    EPD  +   ++  +  
Sbjct: 189 VKMMRLCVP-NSYSFNCLLEAISKSGSIDLVEMRLKEMCDSG-WEPDKYTLTSVLQAYCN 246

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
                 AL+ FNE+  RG     +  + L+  F+   +   A ++ + M  D  ++++  
Sbjct: 247 SRKFDKALSVFNEIYGRGWVDGHV-LSILVLTFSKCGEVDKAFELIERM-EDLGIRLNEK 304

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + +L+ G+ R   V++A ++ ++M+++GF P+V+ Y +L  G+   ++  +AL L  E+
Sbjct: 305 TFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEM 364

Query: 455 KE 456
           KE
Sbjct: 365 KE 366



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 8/219 (3%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           + P+    T++++ Y N  +    + +   +  +     H      + +V    K G +D
Sbjct: 230 WEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGH----VLSILVLTFSKCGEVD 285

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +A +++  M  +G+  N  T+ +L+ G+ +Q ++DKA +L ++M   +   PDV  Y+ L
Sbjct: 286 KAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKM-QKSGFAPDVSVYDAL 344

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I G     +   AL   +EM+  GI P       L K  A  S+     ++ +E L D  
Sbjct: 345 IGGLCAKKEIEKALHLLSEMKELGIDP---DIQILSKLIAYCSEEVDIYRLIEERLEDLD 401

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            +  ++ +N ++ G      V++A  ++  M  + +  N
Sbjct: 402 TEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDN 440



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           P+  ++  ++ A+ K+GS+D     L EM   G   ++ T   +L+ YC   + DKA  +
Sbjct: 197 PNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSV 256

Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
             E+     ++  V+S  IL+  F    +   A      M   GI   + ++  L+  F 
Sbjct: 257 FNEIYGRGWVDGHVLS--ILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFV 314

Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
             S+   A ++F +M +      D+  ++ L+ G C    +E+A  ++  MKE G  P++
Sbjct: 315 RQSRVDKALQLFKKMQKSGFAP-DVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDI 373

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCE 459
                L    S      E + +++ I+ER E
Sbjct: 374 QILSKLIAYCS------EEVDIYRLIEERLE 398



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 58/334 (17%)

Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
           + R ED     +  T+  ++   V+   +D+A Q+  +M + G   +   Y+ L+ G C 
Sbjct: 291 IERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCA 350

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILI-------DGFILID------DSAGALTFF 345
           + +I+KA  LL EM  +  I+PD+   + LI       D + LI+      D+   L  +
Sbjct: 351 KKEIEKALHLLSEM-KELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLY 409

Query: 346 NEM---RARGIAPTKISYTTLMKAFALSSQPK--LANKVFDEMLRDPRVKVDIVAWNMLV 400
           N +      G +  K  Y  L++A    +       NK F  M+++  V+ D  ++++++
Sbjct: 410 NSVLNGLVNGKSVDKAYY--LLRAMTGDNYTDNFEVNKFF--MVKE-MVRPDTTSFSIVI 464

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +G C  G ++ A  +   M   G   NV  Y +L + +S + +  E  LL KE+K     
Sbjct: 465 DGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMK----- 519

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                          +P +   +++     R      AL++V  M  HG  P    Y  +
Sbjct: 520 -----------GSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLL 568

Query: 521 YVEMHSRMFTSKHASQARQDRRRERKRAAEAFKF 554
             ++                   +RKR+AEA  F
Sbjct: 569 VKQLC------------------KRKRSAEACNF 584



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 112/242 (46%), Gaps = 29/242 (11%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N + +  L+ G++ + RV   +++   M++   +   PD   Y  ++  L     +++A 
Sbjct: 302 NEKTFCVLIHGFVRQSRVDKALQLFKKMQK---SGFAPDVSVYDALIGGLCAKKEIEKAL 358

Query: 272 QVLAEMTRIGV-PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +L+EM  +G+ P  +I   ++   YC + ++D  + L+ E  +D   E  ++ YN +++
Sbjct: 359 HLLSEMKELGIDPDIQILSKLI--AYCSE-EVDIYR-LIEERLEDLDTEAMLLLYNSVLN 414

Query: 331 GFI---LID---------------DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
           G +    +D               D+     FF  M    + P   S++ ++     + +
Sbjct: 415 GLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFF--MVKEMVRPDTTSFSIVIDGLCNTGK 472

Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
             LA  +F +M+R    K +++ +N L++       +EE   +++ MK +GF P   T+ 
Sbjct: 473 LDLALSLFRDMVR-VGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHN 531

Query: 433 SL 434
           S+
Sbjct: 532 SI 533



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 15/101 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSK-PDTA 59
           M+R G+LP + A+S  +        DG V+ +K  D  ++  R     DI +    PD  
Sbjct: 588 MVREGFLPDIVAYSAAI--------DGFVK-IKAVDQALEIFR-----DICARGYCPDVV 633

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           AYN ++N    + +  +   + D+M   G  P V+TYN++I
Sbjct: 634 AYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 674


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/498 (22%), Positives = 216/498 (43%), Gaps = 43/498 (8%)

Query: 27  GPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86
           G V  +K +   +  ++  S   +    KP+ + +N V+N    L        +   M +
Sbjct: 34  GIVAKMKHYTTAISLIKHMSYIGV----KPNVSTHNIVINCLCRLNHTVFGFSVLGLMFK 89

Query: 87  FGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
            G +P ++T+  ++  LC   +    + FV + + +MG      T  +++      G   
Sbjct: 90  IGVEPSIVTFTTIVNGLCVEGNVAQAIRFV-DHLKDMGYESDRYTRGAIINGLCKVGHSS 148

Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
            A + ++ M E   +       LD+  YS+  +G    D  VFE L            + 
Sbjct: 149 AALSYLKKMEEQNCN-------LDVTAYSAVVDG-LCKDGMVFEAL-------DLFSQMT 193

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
            K   PN   Y  L+ G  N  R  +   +L  M R+      PD  T+  +    +K G
Sbjct: 194 GKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRK---GIMPDVQTFNVIAGRFLKTG 250

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
            + RA+ + + M  +G+  N +TYN ++  +C   Q+  A E+   M     + P++V+Y
Sbjct: 251 MISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCL-PNIVTY 309

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           N LI G+    +   A+ F  EM   G+ P  ++++TL+  F  + +P  A ++F  M +
Sbjct: 310 NSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHK 369

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445
             ++  D+    ++++G  +     EA  +   +++     ++  Y  + NG+  + K  
Sbjct: 370 HGQLP-DLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLN 428

Query: 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505
           +AL L+  +  +  VK + V  +  +    K  E LLD   D+ ++             M
Sbjct: 429 DALELFSYLSSK-GVKIDVVTYNIMINGLCK--EGLLDDAEDLLMK-------------M 472

Query: 506 EEHGIPPNKTKYKKIYVE 523
           EE+G PP++  Y  ++V+
Sbjct: 473 EENGCPPDECTY-NVFVQ 489



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 166/388 (42%), Gaps = 59/388 (15%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           +   D  AY+AV++     G   + L LF QM   G +P++ TYN +I       R    
Sbjct: 161 NCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEA 220

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
             +L  ++  GI   + TF  +   ++  G +  A++I   M  G   +     E ++  
Sbjct: 221 APLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFM--GHMGI-----EHNVVT 273

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
           Y+S           +    + N +  + E    ++ K   PN   Y +L+ G+     ++
Sbjct: 274 YNS----------IIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMN 323

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
             +  LG M    +N   PD VT++T++    KAG    A+++   M + G   +  T  
Sbjct: 324 KAMYFLGEMV---NNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCA 380

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
           I+L G  +     +A  L RE+ +    + D++ Y+I+++G         AL  F+ + +
Sbjct: 381 IILDGLFKCHFHSEAMSLFREL-EKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSS 439

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G                                    VK+D+V +N+++ G C+ GL++
Sbjct: 440 KG------------------------------------VKIDVVTYNIMINGLCKEGLLD 463

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGI 438
           +A+ ++ +M+ENG  P+  TY     G+
Sbjct: 464 DAEDLLMKMEENGCPPDECTYNVFVQGL 491



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/397 (19%), Positives = 161/397 (40%), Gaps = 43/397 (10%)

Query: 10  VKAWSTVVSRLAASGDDGPV-ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNAC 68
           V A+S VV  L     DG V E++ LF  +  +             +P+   YN +++  
Sbjct: 166 VTAYSAVVDGLC---KDGMVFEALDLFSQMTGK-----------GIQPNLFTYNCLIHGL 211

Query: 69  ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
            N  + K+   L   M   G  PDV T+NV+     +         +   +  MGI   +
Sbjct: 212 CNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNV 271

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAM-REGR-----------RDVCKIIRELDLEDYSSE 176
            T+ S++ A+     ++ A  +   M R+G               C+         +  E
Sbjct: 272 VTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGE 331

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLMKGYMNEGR 228
              +  D D V    L      + +P    + F         P+ +    ++ G      
Sbjct: 332 MVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHF 391

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
            S+ + +    R  E   S  D + Y+ +++ +  +G ++ A ++ + ++  GV  + +T
Sbjct: 392 HSEAMSLF---RELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVT 448

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           YNI++ G C++  +D A++LL +M ++    PD  +YN+ + G +   + + +  +   M
Sbjct: 449 YNIMINGLCKEGLLDDAEDLLMKMEENG-CPPDECTYNVFVQGLLRRYEISKSTKYLMFM 507

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           + +G      +   L+  F+ + +    N+ F   L+
Sbjct: 508 KGKGFRANATTTKLLINYFSANKE----NRAFQVFLQ 540



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 18/217 (8%)

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +D A +   +M    K  P V  +N+L      +     A++    M   G+ P   ++
Sbjct: 6   SVDVALDFYHKMVT-MKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTH 64

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             ++      +       V   M +   V+  IV +  +V G C  G V +A R ++ +K
Sbjct: 65  NIVINCLCRLNHTVFGFSVLGLMFK-IGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLK 123

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
           + G+  +  T G++ NG+        AL   K+++E+        N + D+         
Sbjct: 124 DMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQ--------NCNLDVTA------- 168

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
              A+ D   +     +AL++ + M   GI PN   Y
Sbjct: 169 -YSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTY 204


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 155/326 (47%), Gaps = 22/326 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P++  Y  ++K ++   +  +   +   +  +E +   PD   +  ++    KAG+ ++A
Sbjct: 208 PSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKA 267

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           RQ+ A MT+ GVP + +TYN L+       ++ K  + ++     + ++PDV+SY +LI+
Sbjct: 268 RQIFALMTQRGVPKSTVTYNSLMSFETNYKEVSKIYDQMQR----SGLQPDVISYALLIN 323

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
            +        AL  F EM   G+ PT  +Y  L+ AFA+S   + A  VF  M RD R  
Sbjct: 324 AYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRD-RYT 382

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D+ ++  ++  Y     +  A+    R+K++G  PNV TYG+L  G +      + +  
Sbjct: 383 PDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEK 442

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           ++E++ R                 +K ++ +   + D   +   F  A+     ME++G+
Sbjct: 443 YEEMQLRG----------------VKANQTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGV 486

Query: 511 PPNKTKYKKIYVEMHSRMFTSKHASQ 536
           PP++ K K I + +       K A+Q
Sbjct: 487 PPDQ-KAKNILLSLAKTADEQKEANQ 511



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 150/330 (45%), Gaps = 26/330 (7%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
           ++   M++ G  P+V+++  +++   R +R +    +  R+   G      T+Q ++  +
Sbjct: 161 KVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNF 220

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
           V     + AE + + + +  +   K  +++  +  Y     G+ +   ++F         
Sbjct: 221 VEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIF--------- 271

Query: 198 PSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
                 L+ +   P S + Y +LM    N   VS   ++   M+R   +   PD ++Y  
Sbjct: 272 -----ALMTQRGVPKSTVTYNSLMSFETNYKEVS---KIYDQMQR---SGLQPDVISYAL 320

Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
           +++A  KA   D A  V  EM   GV      YNILL  +     +++A+ + + M  D 
Sbjct: 321 LINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRD- 379

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
           +  PD+ SY  ++  ++   D AGA  FFN ++  G+ P  ++Y  L+K +A ++     
Sbjct: 380 RYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKM 439

Query: 377 NKVFDEM-LRDPRVKVDIVAWNMLVEGYCR 405
            + ++EM LR   VK +   +  +++ Y +
Sbjct: 440 MEKYEEMQLRG--VKANQTIFTTIMDAYGK 467



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 25/239 (10%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
            T  YN++++   N    K+  +++DQM   G +PDV++Y ++I    +A R+   + V 
Sbjct: 282 STVTYNSLMSFETNY---KEVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVF 338

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYS 174
           E +L+ G+      +  L+ A+   G +E A T+ ++MR  R   D+C     L     +
Sbjct: 339 EEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLS----A 394

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
             N  D    +  F +L  + +              PN   Y  L+KGY    + ++  +
Sbjct: 395 YVNASDMAGAENFFNRLKQDGLE-------------PNVVTYGALIKGY---AKTNNLDK 438

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           M+      +      +   +TT++ A  K      A     EM + GVP ++   NILL
Sbjct: 439 MMEKYEEMQLRGVKANQTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILL 497



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +G  P  KA++ ++   A SG    VE  +    V K +R+           PD  +
Sbjct: 341 MLDAGVRPTHKAYNILLDAFAISG---MVEQAR---TVFKSMRR-------DRYTPDLCS 387

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +L+A  N          F+++ + G +P+V+TY  +IK  A+ +    ++   E + 
Sbjct: 388 YTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQ 447

Query: 121 EMGITLCMTTFQSLVAAY 138
             G+    T F +++ AY
Sbjct: 448 LRGVKANQTIFTTIMDAY 465


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 19/238 (7%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVR-MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           +P+      L+    N  RV + +  M G +RR       PD VTYTT++  L     + 
Sbjct: 128 SPDCCTLNILLNCLCNVNRVGEGLAVMAGILRR----GYIPDIVTYTTLIKGLCMEHRIS 183

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI-----EPDVV 323
           +A  +   M ++G   N ITY  L+KG C+   I  A +L +EM +D+ +     +P V+
Sbjct: 184 KAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVI 243

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           SY+I+ID          A   F EM+ +G+ PT ISYT+LM         + A ++F+EM
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEM 295

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
           + +  V+ ++V +N+L++  C+ G V EAK ++E M + G  PN+ TY SL  G  L 
Sbjct: 296 V-NQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLV 352



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 189/428 (44%), Gaps = 31/428 (7%)

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCA--RAS 107
           +S   PD    N +LN   N+ +  + L +   +   G  PD++TY  +IK LC   R S
Sbjct: 124 LSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRIS 183

Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRRDVC 162
           +  LL     R+ ++G T    T+ +L+      G++ IA  + Q M       G     
Sbjct: 184 KAALL---FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKP 240

Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP--------------PLLPKT 208
            +I    + D   ++  +D+  D +FE++    + P+                  ++ + 
Sbjct: 241 VVISYSIIIDALCKDRREDEARD-LFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQG 299

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
             PN   +  L+     EG+V +   +L  M ++      P+ +TY +++      G ++
Sbjct: 300 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQR---GIVPNLLTYNSLIEGFCLVGDLN 356

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            AR++   M   G   + I Y +L+ GYC+  ++++A +L   M    K  PDV +Y  L
Sbjct: 357 SARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK-RPDVKTYGAL 415

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           + G         A   F  M+  GI      Y   +     +     A ++F++ L+   
Sbjct: 416 LTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNK-LKSYN 474

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           +K+DI  +N L++G C+ G +E A  + E++ +    P+V TY  + +      +  +A 
Sbjct: 475 IKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKAN 534

Query: 449 LLWKEIKE 456
           +L++++++
Sbjct: 535 ILFQKMEK 542



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 146/320 (45%), Gaps = 20/320 (6%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
           +LF++M   G +P+V+T+NV+I +  +  +      +LE +++ GI   + T+ SL+  +
Sbjct: 290 RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGF 349

Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
              GDL  A  +  +M     +   I   + +  Y   ++ ++        KL    +  
Sbjct: 350 CLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEA------MKLYNGMLQV 403

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
                       P+ + Y  L+ G    G+V D  ++ G M+         D   Y   +
Sbjct: 404 GKR---------PDVKTYGALLTGLFQGGKVGDAKKLFGVMKVY---GIPGDLYIYGIFL 451

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
           + L K G +  A ++  ++    +  +   +N L+ G C+  +++ A EL  ++  + ++
Sbjct: 452 NGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE-EL 510

Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
           +PDVV+YNI+I  F        A   F +M   G  P KI+Y TL++ F  S + +   +
Sbjct: 511 QPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVE 570

Query: 379 VFDEML-RDPRVKVDIVAWN 397
           +   M+ RD  + V+I+  N
Sbjct: 571 LLHMMVQRDVSLDVNILRHN 590



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P + S+  L+ G   I   +     +N+MR  GI+P   +   L+      ++      V
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
              +LR   +  DIV +  L++G C    + +A  +  RM++ G  PN  TYG+L  G+ 
Sbjct: 154 MAGILRRGYIP-DIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLC 212

Query: 440 LARKPGEALLLWKEI 454
                  AL L +E+
Sbjct: 213 RTGNISIALKLHQEM 227



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
           + I PD  + NIL++    ++     L     +  RG  P  ++YTTL+K   +  +   
Sbjct: 125 SGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISK 184

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG------FYPNVA 429
           A  +F  M +      + + +  L++G CR G +  A ++ + M  +       F P V 
Sbjct: 185 AALLFTRM-QKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVI 243

Query: 430 TYGSLANGISLARKPGEALLLWKEIK-----------------ERCEVKKEGVNADSDLP 472
           +Y  + + +   R+  EA  L++E+K                 E   +  E VN      
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQG---- 299

Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             ++P+    + L D+  +     +A +++  M + GI PN   Y  +
Sbjct: 300 --VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 345



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A  FF+ M      P   S+T L+   A          ++++M R   +  D    N+L+
Sbjct: 80  AFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQM-RLSGISPDCCTLNILL 138

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
              C +  V E   ++  +   G+ P++ TY +L  G+ +  +  +A LL+  +++
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQK 194



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 28/185 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDV-------------------VVKR 41
           ML+ G  P VK +  +++ L   G  G  ++ KLF V                   + K 
Sbjct: 400 MLQVGKRPDVKTYGALLTGLFQGGKVG--DAKKLFGVMKVYGIPGDLYIYGIFLNGLCKN 457

Query: 42  VRKFSDPDIVS-----DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96
              F   ++ +     + K D   +N +++     GK +   +LF+++ +   +PDV+TY
Sbjct: 458 GCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTY 517

Query: 97  NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
           N+MI    R  +      + +++ + G T    T+ +L+  +     LE    ++  M +
Sbjct: 518 NIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQ 577

Query: 157 GRRDV 161
             RDV
Sbjct: 578 --RDV 580


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 201/489 (41%), Gaps = 91/489 (18%)

Query: 53  DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
           D  P+T  YN +++        ++ +   ++M      P+V TY ++  LC   ++K L 
Sbjct: 303 DFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRIL--LCGCLNKKQL- 359

Query: 113 VFVLERILEM----GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
               +RIL M    G     T F SLV AY    D   A  +++ M +     CK     
Sbjct: 360 -GRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCE---CK----- 410

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
                             V   +L  SI    E P  P TF    + Y  ++      G 
Sbjct: 411 ---------------PGYVVYNILIGSICSGGELPG-PVTFELAEKAYNEMLSA----GT 450

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V + V ++   R                    L   G  ++A +V+ EM   G   +  T
Sbjct: 451 VLNKVNVVSFAR-------------------CLCGFGKFEKAYKVIHEMMGNGFVPDTST 491

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y+ ++   C   +++ A  L +EM     + PDV +Y ILID F        A  + +EM
Sbjct: 492 YSEVIGFLCNASRVENAFFLFKEMKGTGVV-PDVYTYTILIDCFSKAGIIKQAHNWLDEM 550

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
              G  PT ++YTTL+ A+  + +  +AN++F+ M+       +++ +  L++GYC+ G 
Sbjct: 551 VRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFP-NVITYTALIDGYCKSGN 609

Query: 409 VEEAKRIIERMKENG------FY----------PNVATYGSLANGISLARKPGEAL-LLW 451
           +E+A +I  RM+ +        Y          PNV TYG+L +G+  A K  +A  LL 
Sbjct: 610 IEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLE 669

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
               + CE                 P+  + DAL D   +AA   +A E+   M EHG  
Sbjct: 670 TMFVDGCE-----------------PNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYN 712

Query: 512 PNKTKYKKI 520
           PN   Y  +
Sbjct: 713 PNVYTYSSL 721



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 170/403 (42%), Gaps = 34/403 (8%)

Query: 69  ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM 128
              GK +K  ++  +M   G  PD  TY+ +I     ASR     F+ + +   G+   +
Sbjct: 465 CGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDV 524

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVF 188
            T+  L+  +   G ++ A   +  M    RD C    E  +  Y++           + 
Sbjct: 525 YTYTILIDCFSKAGIIKQAHNWLDEM---VRDGC----EPTVVTYTT----------LIH 567

Query: 189 EKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED-- 244
             L    ++ ++E    ++ K   PN   YT L+ GY   G +    ++   MR   D  
Sbjct: 568 AYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIP 627

Query: 245 -----------NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
                       A  P+ VTY  +V  L KA  +  AR +L  M   G   N I Y+ L+
Sbjct: 628 DVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALI 687

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G+C+  ++D+A+E+  +M +     P+V +Y+ LID           L   ++M     
Sbjct: 688 DGFCKAAKLDEAQEVFHKMVEHG-YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSC 746

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           AP  + YT ++   +  ++   A K+   M+ +   K ++V +  +++G+ + G V++  
Sbjct: 747 APNIVIYTEMIDGLSKVAKTDEAYKLM-LMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCL 805

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            +   M   G  PN  TY  L N         EA  L +E+K+
Sbjct: 806 ELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQ 848



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 118/549 (21%), Positives = 205/549 (37%), Gaps = 100/549 (18%)

Query: 41  RVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           R ++     I     P    +N++++A           +L  +M +   KP  + YN++I
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420

Query: 101 -KLCARASRKHLLVFVL-----ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
             +C+       + F L       +L  G  L      S      GFG  E A  ++  M
Sbjct: 421 GSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEM 480

Query: 155 REGRRDVCKIIRELDLEDYSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
             G   V       D   YS       N    ++   +F+++    +             
Sbjct: 481 M-GNGFV------PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGV------------- 520

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   YT L+  +   G +      L  M R   +   P  VTYTT++ A +KA  +  
Sbjct: 521 VPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR---DGCEPTVVTYTTLIHAYLKAKKVSV 577

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI----------- 318
           A ++   M   G   N ITY  L+ GYC+   I+KA ++   M  DA I           
Sbjct: 578 ANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN 637

Query: 319 ----EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
               +P+VV+Y  L+DG         A      M   G  P  I Y  L+  F  +++  
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLD 697

Query: 375 LANKVF-------------------DEMLRDPRVKV---------------DIVAWNMLV 400
            A +VF                   D + +D R+ +               +IV +  ++
Sbjct: 698 EAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
           +G  ++   +EA +++  M+E G  PNV TY ++ +G   A K  + L L++E+  +   
Sbjct: 758 DGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSK--- 814

Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                           P+      L + C       +A  ++  M++   P + + Y K+
Sbjct: 815 -------------GCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKV 861

Query: 521 YVEMHSRMF 529
            +E + R F
Sbjct: 862 -IEGYKREF 869



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 199/469 (42%), Gaps = 49/469 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G++P    +S V+  L  +     VE+           ++     +V    PD   
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASR---VENAFFL------FKEMKGTGVV----PDVYT 526

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  +++  +  G  K+     D+M   G +P V+TY  +I    +A +  +   + E ++
Sbjct: 527 YTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMI 586

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    + T+ +L+  Y   G++E A  I   MR G  D+       D++ Y       
Sbjct: 587 AKGCFPNVITYTALIDGYCKSGNIEKACQIYARMR-GDADI------PDVDMYFKIKNNV 639

Query: 181 DDDDDEVFEKLLPNSINPSSEPP----LLPKTFA----PNSRIYTTLMKGYMNEGRVSDT 232
            +  + V    L + +  + +      LL   F     PN+ +Y  L+ G+    ++ + 
Sbjct: 640 AEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEA 699

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             +   M     N   P+  TY++++  L K   +D   +VL++M       N + Y  +
Sbjct: 700 QEVFHKMVEHGYN---PNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEM 756

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G  +  + D+A +L+  M ++   +P+VV+Y  +IDGF         L  F EM ++G
Sbjct: 757 IDGLSKVAKTDEAYKLML-MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
            AP  ++YT L+     +     A  + +EM +          W   V  YC+  ++E  
Sbjct: 816 CAPNFVTYTVLINHCCATGHLDEAYALLEEMKQ--------TYWPKHVSSYCK--VIEGY 865

Query: 413 KR-------IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           KR       ++E +++NG  P +  Y  L +    A +   AL L KE+
Sbjct: 866 KREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEV 914



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/465 (21%), Positives = 187/465 (40%), Gaps = 82/465 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSD-PDI--------- 50
           M+  G  P+V  ++ ++     SG+      ++    +  R+R  +D PD+         
Sbjct: 585 MIAKGCFPNVITYTALIDGYCKSGN------IEKACQIYARMRGDADIPDVDMYFKIKNN 638

Query: 51  VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           V++ KP+   Y A+++      K K    L + M   G +P+ + Y+ +I    +A++  
Sbjct: 639 VAE-KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLD 697

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
               V  +++E G    + T+ SL+                +  ++ R D+         
Sbjct: 698 EAQEVFHKMVEHGYNPNVYTYSSLID---------------RLFKDKRLDLVL------- 735

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                          +V  K+L NS              APN  IYT ++ G     +  
Sbjct: 736 ---------------KVLSKMLENSC-------------APNIVIYTEMIDGLSKVAKTD 767

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
           +  +++  M   E+    P+ VTYT ++    KAG +D+  ++  EM   G   N +TY 
Sbjct: 768 EAYKLMLMM---EEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYT 824

Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG----FILIDDSAGALTFFN 346
           +L+   C    +D+A  LL EM         V SY  +I+G    FIL      +L    
Sbjct: 825 VLINHCCATGHLDEAYALLEEM-KQTYWPKHVSSYCKVIEGYKREFIL------SLGLLE 877

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP-RVKVDIVAWNMLVEGYCR 405
           E+   G AP  + Y  L+  F  + + ++A ++  E++     +      +  L+  +  
Sbjct: 878 EVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSY 937

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
              +  A  +   M  +G  P++ T+  L  G+   R+  EAL L
Sbjct: 938 ASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 105/293 (35%), Gaps = 75/293 (25%)

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA----------- 284
           L  + R +D    P  +TY  +V   ++A  +D A+ V  EM+ +G+             
Sbjct: 226 LEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQA 285

Query: 285 ---------------------NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
                                N I YN ++ G C+    ++A + L  M   + I P+V 
Sbjct: 286 LCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCI-PNVQ 344

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y IL+ G +            + M A G  P+   + +L+ A+  S     A K+  +M
Sbjct: 345 TYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM 404

Query: 384 LRDPRVKVDIVAWNMLVEGYCR-------------------------------------- 405
                 K   V +N+L+   C                                       
Sbjct: 405 -EKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARC 463

Query: 406 ---MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
               G  E+A ++I  M  NGF P+ +TY  +   +  A +   A  L+KE+K
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMK 516



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 57/292 (19%), Positives = 111/292 (38%), Gaps = 32/292 (10%)

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
             ++    + G  + A + L  +   G    R+TYN L++ + +  ++D A+ + REM+ 
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS- 268

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +  +  D  +          +     AL+    +      P  I Y  ++     +S  +
Sbjct: 269 ELGLSMDEFTLGFFAQALCKVGKWREALSL---IEKEDFVPNTILYNKMISGLCEASFFE 325

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A    + M R      ++  + +L+ G      +   KRI+  M   G YP+   + SL
Sbjct: 326 EAMDFLNRM-RSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSL 384

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKK---------EGVNADSDLPPPL------KPDE 479
            +    +     A  L K++ E+CE K            + +  +LP P+      K   
Sbjct: 385 VHAYCKSDDFSYAYKLLKKM-EKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYN 443

Query: 480 ELLDA-----------LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           E+L A            A        F KA +++  M  +G  P+ + Y ++
Sbjct: 444 EMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEV 495



 Score = 38.9 bits (89), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 20/172 (11%)

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
           R  G   T   Y  L+  F   S  ++  +   E+  D + +V     N+L+   CR GL
Sbjct: 163 RQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGDDK-EVLGKLLNVLIRKCCRNGL 221

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
              A   + R+K+ G+ P   TY +L      A K   A L+ +E+ E            
Sbjct: 222 WNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSEL----------- 270

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                 L  DE  L   A    +   +R+AL ++   E+    PN   Y K+
Sbjct: 271 -----GLSMDEFTLGFFAQALCKVGKWREALSLI---EKEDFVPNTILYNKM 314


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 176/404 (43%), Gaps = 62/404 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P T   N +L   + L + +     +  M+    K +V T+N+MI  LC     K    F
Sbjct: 188 PKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGF 247

Query: 115 VLERILEM-GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           +   I+E+ GI   + T+ +LV  +   G +E A  I+  M+                  
Sbjct: 248 L--GIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKS----------------- 288

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                            K F P+ + Y  ++    NEGR S+  
Sbjct: 289 ---------------------------------KGFQPDMQTYNPILSWMCNEGRASE-- 313

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
                +R  ++    PD V+Y  ++      G ++ A     EM + G+     TYN L+
Sbjct: 314 ----VLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLI 369

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G   + +I+ A+ L+RE+ +   I  D V+YNILI+G+    D+  A    +EM   GI
Sbjct: 370 HGLFMENKIEAAEILIREIREKG-IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGI 428

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            PT+ +YT+L+      ++ + A+++F++++    +K D+V  N L++G+C +G ++ A 
Sbjct: 429 QPTQFTYTSLIYVLCRKNKTREADELFEKVV-GKGMKPDLVMMNTLMDGHCAIGNMDRAF 487

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +++ M      P+  TY  L  G+    K  EA  L  E+K R
Sbjct: 488 SLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR 531



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 157/329 (47%), Gaps = 22/329 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   YN +L+   N G+  + L+   +M E G  PD ++YN++I+ C+      +   
Sbjct: 292 QPDMQTYNPILSWMCNEGRASEVLR---EMKEIGLVPDSVSYNILIRGCSNNGDLEMAFA 348

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             + +++ G+     T+ +L+        +E AE +++ +RE    +  +   + +  Y 
Sbjct: 349 YRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYC 408

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               GD      + ++++ + I P+         F   S IY    K   N+ R +D + 
Sbjct: 409 --QHGDAKKAFALHDEMMTDGIQPTQ--------FTYTSLIYVLCRK---NKTREADEL- 454

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                 +       PD V   T++      G+MDRA  +L EM  + +  + +TYN L++
Sbjct: 455 ----FEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMR 510

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C + + ++A+EL+ EM     I+PD +SYN LI G+    D+  A    +EM + G  
Sbjct: 511 GLCGEGKFEEARELMGEMKRRG-IKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFN 569

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM 383
           PT ++Y  L+K  + + + +LA ++  EM
Sbjct: 570 PTLLTYNALLKGLSKNQEGELAEELLREM 598



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 160/350 (45%), Gaps = 32/350 (9%)

Query: 213 SRIYT--TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           S +YT   ++     EG++      LG M   E     P  VTY T+V      G ++ A
Sbjct: 223 SNVYTFNIMINVLCKEGKLKKAKGFLGIM---EVFGIKPTIVTYNTLVQGFSLRGRIEGA 279

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R +++EM   G   +  TYN +L   C +    +A E+LREM +   + PD VSYNILI 
Sbjct: 280 RLIISEMKSKGFQPDMQTYNPILSWMCNE---GRASEVLREMKEIGLV-PDSVSYNILIR 335

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     D   A  + +EM  +G+ PT  +Y TL+    + ++ + A  +  E +R+  + 
Sbjct: 336 GCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIRE-IREKGIV 394

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           +D V +N+L+ GYC+ G  ++A  + + M  +G  P   TY SL   +    K  EA  L
Sbjct: 395 LDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADEL 454

Query: 451 WKEIKER----------------CEV----KKEGVNADSDLPPPLKPDEELLDALADICV 490
           ++++  +                C +    +   +  + D+   + PD+   + L     
Sbjct: 455 FEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDM-MSINPDDVTYNCLMRGLC 513

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
               F +A E++  M+  GI P+   Y  + +  +S+   +KHA   R +
Sbjct: 514 GEGKFEEARELMGEMKRRGIKPDHISYNTL-ISGYSKKGDTKHAFMVRDE 562



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 54/363 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G+ P ++ ++ ++S +   G    V            +R+  +  +V    PD+ +
Sbjct: 286 MKSKGFQPDMQTYNPILSWMCNEGRASEV------------LREMKEIGLV----PDSVS 329

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++  C+N G  +      D+M + G  P   TYN +I      ++      ++  I 
Sbjct: 330 YNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 389

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREGRRDVCKIIRELDLEDYSS 175
           E GI L   T+  L+  Y   GD + A     E +   ++  +     +I  L  ++ + 
Sbjct: 390 EKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTR 449

Query: 176 ENEGDDDDDDEVFEKLLPNSINP----------------------SSEPPLLPKTFAPNS 213
           E        DE+FEK++   + P                      S    +   +  P+ 
Sbjct: 450 E-------ADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y  LM+G   EG+  +   ++G M+R+      PDH++Y T++S   K G    A  V
Sbjct: 503 VTYNCLMRGLCGEGKFEEARELMGEMKRR---GIKPDHISYNTLISGYSKKGDTKHAFMV 559

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM  +G     +TYN LLKG  +  + + A+ELLREM  +  I P+  S+  +I+   
Sbjct: 560 RDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEG-IVPNDSSFCSVIEAMS 618

Query: 334 LID 336
            +D
Sbjct: 619 NLD 621



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 109/210 (51%), Gaps = 5/210 (2%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           +P   T   +++ L +   ++ A    A+M R+ + +N  T+NI++   C++ ++ KAK 
Sbjct: 187 YPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKG 246

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
            L  M +   I+P +V+YN L+ GF L     GA    +EM+++G  P   +Y  ++   
Sbjct: 247 FLGIM-EVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWM 305

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               +   A++V  EM ++  +  D V++N+L+ G    G +E A    + M + G  P 
Sbjct: 306 CNEGR---ASEVLREM-KEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPT 361

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKER 457
             TY +L +G+ +  K   A +L +EI+E+
Sbjct: 362 FYTYNTLIHGLFMENKIEAAEILIREIREK 391



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 2/168 (1%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           I +++L++  CQ   +D+A E    M +     P   + N ++     ++    A  F+ 
Sbjct: 156 ILFDLLVRCCCQLRMVDEAIECFYLMKEKG-FYPKTETCNHILTLLSRLNRIENAWVFYA 214

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +M    I     ++  ++       + K A K F  ++    +K  IV +N LV+G+   
Sbjct: 215 DMYRMEIKSNVYTFNIMINVLCKEGKLKKA-KGFLGIMEVFGIKPTIVTYNTLVQGFSLR 273

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           G +E A+ II  MK  GF P++ TY  + + +    +  E L   KEI
Sbjct: 274 GRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEI 321



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 22/178 (12%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A+  F  M+ +G  P   +   ++   +  ++ + A   + +M R   +K ++  +N+++
Sbjct: 174 AIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYR-MEIKSNVYTFNIMI 232

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL-ARKPGEALLLWKEIKERCE 459
              C+ G +++AK  +  M+  G  P + TY +L  G SL  R  G  L++        E
Sbjct: 233 NVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLII-------SE 285

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
           +K +G   D     P+         L+ +C       +A E++  M+E G+ P+   Y
Sbjct: 286 MKSKGFQPDMQTYNPI---------LSWMCNEG----RASEVLREMKEIGLVPDSVSY 330


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 20/301 (6%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   +  +++   + GR  D  ++L  M R+      P  VT+  +++ L + G + RA
Sbjct: 150 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRK---GCSPSVVTFNILINFLCRQGLLGRA 206

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
             +L +M   G   N ++YN LL G+C++ ++D+A E L  M       PD+V+YN L+ 
Sbjct: 207 IDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG-CYPDIVTYNTLLT 265

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
                     A+   N++ ++G +P  I+Y T++   +   + + A K+ DEM R   +K
Sbjct: 266 ALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM-RRKGLK 324

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL-L 449
            DI+ ++ LV G  R G V+EA +    ++  G  PN  TY S+  G+  +R+   A+  
Sbjct: 325 PDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDF 384

Query: 450 LWKEIKERCE-------VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
           L   I +RC+       +  EG+  +          +E LD L ++C R    + + E V
Sbjct: 385 LAYMISKRCKPTEATYTILIEGIAYEG-------LAKEALDLLNELCSRGLVKKSSAEQV 437

Query: 503 A 503
           A
Sbjct: 438 A 438



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 131/299 (43%), Gaps = 21/299 (7%)

Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
           E  V   +++L  MR   +  S PD VTY  +++ + K G +D A + L  M   G   N
Sbjct: 95  ESGVGQAMKLLDEMR---NKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPN 151

Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
            IT+NI+L+  C   +   A++LL +M       P VV++NILI+          A+   
Sbjct: 152 VITHNIILRSMCSTGRWMDAEKLLSDMLRKG-CSPSVVTFNILINFLCRQGLLGRAIDIL 210

Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
            +M   G  P  +SY  L+  F    +   A +  D M+       DIV +N L+   C+
Sbjct: 211 EKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR-GCYPDIVTYNTLLTALCK 269

Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
            G V+ A  I+ ++   G  P + TY ++ +G+S   K   A+ L  E++ +        
Sbjct: 270 DGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK-------- 321

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
                    LKPD     +L     R     +A++    +E  GI PN   Y  I + +
Sbjct: 322 --------GLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 372



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 141/321 (43%), Gaps = 24/321 (7%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           SKPD   YN ++N     G+  + ++  + M  +G +P+V+T+N++++      R     
Sbjct: 113 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAE 172

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +L  +L  G +  + TF  L+      G L  A  I++ M         +     L  +
Sbjct: 173 KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGF 232

Query: 174 SSENEGD---DDDDDEVFEKLLPNSINPSSEPPLL-----------------PKTFAPNS 213
             E + D   +  D  V     P+ +  ++    L                  K  +P  
Sbjct: 233 CKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVL 292

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y T++ G    G+    +++L  MRR+      PD +TY+++VS L + G +D A + 
Sbjct: 293 ITYNTVIDGLSKVGKTERAIKLLDEMRRK---GLKPDIITYSSLVSGLSREGKVDEAIKF 349

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             ++  +G+  N ITYN ++ G C+  Q D+A + L  M    + +P   +Y ILI+G  
Sbjct: 350 FHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISK-RCKPTEATYTILIEGIA 408

Query: 334 LIDDSAGALTFFNEMRARGIA 354
               +  AL   NE+ +RG+ 
Sbjct: 409 YEGLAKEALDLLNELCSRGLV 429



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/314 (19%), Positives = 118/314 (37%), Gaps = 66/314 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G  P V  ++ +++ L   G  G     +  D++ K          +    P++ +
Sbjct: 178 MLRKGCSPSVVTFNILINFLCRQGLLG-----RAIDILEKMP--------MHGCTPNSLS 224

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+      K  + ++  D M   G  PD++TYN ++    +  +  + V +L ++ 
Sbjct: 225 YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 284

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + T+ +++      G  E A  ++  MR                         
Sbjct: 285 SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR------------------------ 320

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                     K   P+   Y++L+ G   EG+V + ++    + 
Sbjct: 321 --------------------------KGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL- 353

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E     P+ +TY +++  L K+   DRA   LA M          TY IL++G   + 
Sbjct: 354 --EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 411

Query: 301 QIDKAKELLREMAD 314
              +A +LL E+  
Sbjct: 412 LAKEALDLLNELCS 425


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 148/317 (46%), Gaps = 22/317 (6%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL    AP +R++  LM+ ++  G +    ++   MRR    +  P  VT+ T++S + +
Sbjct: 177 LLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR----SVQPTVVTFNTLISGMCR 232

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A  +D    +  EM+ +GV  +  TY  L+KG+C+  +++ A ++  EM D   + P+ V
Sbjct: 233 ARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTG-VNPNAV 291

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            +  LID      +    +  + +MR RG+ P  ++Y  L+     +   K A  + +EM
Sbjct: 292 VFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEM 351

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            ++  +K D V +  L++G C+ G ++ A  I ++M E     +  TY +L +G+S A +
Sbjct: 352 -KNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGR 410

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
           P +A  + +E+ E                  L+PD      + D   R    +   +++ 
Sbjct: 411 PVDAERVLREMMEAA----------------LEPDNTTYTMVIDAFCRKGDVKTGFKLLK 454

Query: 504 CMEEHGIPPNKTKYKKI 520
            M+  G  P    Y  I
Sbjct: 455 EMQNKGKKPGVVTYNVI 471



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 174/394 (44%), Gaps = 31/394 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+T  +N ++     LG+     ++FD+M     +P V+T+N +I    RA     +  +
Sbjct: 184 PETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLDAVDGL 242

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + + ++G+   + T+ +L+  +   G +E A  +   MR+   +   ++    ++ +  
Sbjct: 243 YKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCK 302

Query: 176 E---NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
           E   N G D   D     ++P+ +                   Y  L+ G      +   
Sbjct: 303 EGNVNAGMDLYQDMRVRGVMPDLV------------------AYNALVNGLCRARNLKAA 344

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
             ++  M+   +    PD VTYTT++    K G +D A  +  +M    V  + +TY  L
Sbjct: 345 ESIVEEMK---NAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTAL 401

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           + G  +  +   A+ +LREM + A +EPD  +Y ++ID F    D         EM+ +G
Sbjct: 402 ISGLSKAGRPVDAERVLREMME-AALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKG 460

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
             P  ++Y  +M       Q K A+ +   ML +  V  D + +N+L++G C+ G V  +
Sbjct: 461 KKPGVVTYNVIMNGLCKLGQMKNADMLLHAML-NIGVSPDDITYNILLDGQCKHGKVANS 519

Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
           +   E     G  P+ A Y SL + ++  +KP +
Sbjct: 520 E---ELESSKGMVPDFAVYTSLISELA-KKKPAK 549



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 149/351 (42%), Gaps = 46/351 (13%)

Query: 2   LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
           +R    P V  ++T++S +  + D          D V    ++ SD  +    KPD   Y
Sbjct: 212 MRRSVQPTVVTFNTLISGMCRARD---------LDAVDGLYKEMSDVGV----KPDVYTY 258

Query: 62  NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
            A++      G+ +  +++F++M + G  P+ + +  +I    +    +  + + + +  
Sbjct: 259 GALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRV 318

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR-----------DVC----KIIR 166
            G+   +  + +LV       +L+ AE+IV+ M+               D C    K+  
Sbjct: 319 RGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDM 378

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP--------PLLPKTFAPNSRIYTT 218
            +D++   +E E   D   EV    L + ++ +  P         ++     P++  YT 
Sbjct: 379 AMDIKQKMAEKEVSLD---EVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTM 435

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           ++  +  +G V    ++L  M   ++    P  VTY  +++ L K G M  A  +L  M 
Sbjct: 436 VIDAFCRKGDVKTGFKLLKEM---QNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAML 492

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
            IGV  + ITYNILL G C+  ++  ++EL         + PD   Y  LI
Sbjct: 493 NIGVSPDDITYNILLDGQCKHGKVANSEEL----ESSKGMVPDFAVYTSLI 539



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A TF+ ++   G+AP    +  LM+ F    +   A KVFDEM R   V+  +V +N L+
Sbjct: 170 AYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRS--VQPTVVTFNTLI 227

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER--- 457
            G CR   ++    + + M + G  P+V TYG+L  G     +   A+ ++ E+++    
Sbjct: 228 SGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVN 287

Query: 458 -----------CEVKKEGVNADSDLPPPLK-----PDEELLDALADICVRAAFFRKALEI 501
                         K+  VNA  DL   ++     PD    +AL +   RA   + A  I
Sbjct: 288 PNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESI 347

Query: 502 VACMEEHGIPPNKTKYKKI 520
           V  M+  G+ P+K  Y  +
Sbjct: 348 VEEMKNAGLKPDKVTYTTL 366


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/446 (22%), Positives = 201/446 (45%), Gaps = 32/446 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M ++G    +++ + ++++L  +GD G   +V       +++R        + + PD   
Sbjct: 120 MGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAV------FQQMR-------CAGTLPDDFT 166

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
              +  A    G+         +M E G   +++ Y+ ++    R  +  +   +L  + 
Sbjct: 167 VAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQ 226

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G++  + T+  LV  Y   G +E AE +V+ ++E  + V   +    L +   +  G 
Sbjct: 227 VKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQ-RGR 285

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            +D + V ++++   +               N  +Y T++ GY   GR+ +  ++L A  
Sbjct: 286 MEDANRVRDEMIDAGVQ-------------VNMFVYNTMINGYCKLGRMGEVEKLLQA-- 330

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E    + D  +Y T+V    + G M +A +    M R G     +TYN LL G+C + 
Sbjct: 331 -NEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRG 389

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            ID A +L   M     + P+ +S + L+DGF     +  AL  + E  ARG+A   ++ 
Sbjct: 390 AIDDALKLWFLMLKRGVV-PNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTI 448

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
            T++     + +   A ++F  M ++     D + +  L++GYC++G +  A +I   M+
Sbjct: 449 NTVINGLCKNRRMTEAEELFHRM-KEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEME 507

Query: 421 ENGFYPNVATYGSLANGISLARKPGE 446
             GF P+V  + S   G+ +A++ G+
Sbjct: 508 NLGFVPSVEMFNSFITGLFIAKQSGK 533



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 189/413 (45%), Gaps = 24/413 (5%)

Query: 48  PDIV---SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA 104
           PD+V    D     A+++ +L A A+ G+ K  L +FD+M + G++  + + N ++    
Sbjct: 81  PDLVEVYKDFSFSAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLV 140

Query: 105 RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
           +A      V V +++   G      T   +  AY   G +  A   ++ M E   DV  +
Sbjct: 141 QAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLV 200

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
                ++ Y    +       EV  KLL +         L  K  +PN   YT L+KGY 
Sbjct: 201 AYHAVMDGYCRIGQ------TEVARKLLHS---------LQVKGLSPNVVTYTLLVKGYC 245

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
            EGR+ +  +++  ++  E      D V Y  +++   + G M+ A +V  EM   GV  
Sbjct: 246 KEGRMEEAEKVVKEIKENEKIV--IDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQV 303

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAK-IEPDVVSYNILIDGFILIDDSAGALT 343
           N   YN ++ GYC+  ++ + ++LL+  A++ + +  D  SYN L+DG+        A  
Sbjct: 304 NMFVYNTMINGYCKLGRMGEVEKLLQ--ANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFE 361

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
             + M   G   T ++Y TL+  F        A K++  ML+   V  +I + + L++G+
Sbjct: 362 TCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEI-SCSTLLDGF 420

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            + G  E+A  + +     G   NV T  ++ NG+   R+  EA  L+  +KE
Sbjct: 421 FKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKE 473



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 159/336 (47%), Gaps = 22/336 (6%)

Query: 194 NSINPSSEPPLLP--KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251
           +S+ P+  P L+   K F+ ++  +  L++ + + G++ D + +   M +     S    
Sbjct: 73  HSVAPTLFPDLVEVYKDFSFSAASFDLLLRAHADAGQLKDALYVFDEMGKA---GSRRTL 129

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
            +   +++ LV+AG +  A  V  +M   G   +  T  I+ K YC+  ++  A + L+E
Sbjct: 130 RSCNRLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKE 189

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           M ++  ++ ++V+Y+ ++DG+  I  +  A    + ++ +G++P  ++YT L+K +    
Sbjct: 190 M-EEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEG 248

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           + + A KV  E+  + ++ +D VA+  L+ GYC+ G +E+A R+ + M + G   N+  Y
Sbjct: 249 RMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVY 308

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
            ++ NG     + GE   L +  + R      GVN           DE   + L D   R
Sbjct: 309 NTMINGYCKLGRMGEVEKLLQANEYR------GVNL----------DEYSYNTLVDGYCR 352

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
             F  KA E    M  +G       Y  +     SR
Sbjct: 353 KGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSR 388



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 105/482 (21%), Positives = 208/482 (43%), Gaps = 62/482 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
           M+R+G+      ++T+++   + G  DD    ++KL+ +++KR              P+ 
Sbjct: 366 MVRNGFTGTTLTYNTLLNGFCSRGAIDD----ALKLWFLMLKR-----------GVVPNE 410

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
            + + +L+     GK ++ L L+ +    G   +V+T N +I    +  R      +  R
Sbjct: 411 ISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHR 470

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRRDVCKIIRELDLEDYSSEN 177
           + E        T+++L+  Y   GDL  A  I   M   G     ++        + ++ 
Sbjct: 471 MKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQ 530

Query: 178 EGDDDDD--DEVFEKLLPNSINPSSEPP-----------------LLPKTFAPNSRIYTT 218
            G  +D   +   + L PN++   +                    ++ K   PN  I + 
Sbjct: 531 SGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSV 590

Query: 219 LMKGYMNEGRV-------------------SDTVRMLGAMRRQEDNASHPDH----VTYT 255
           L+  +  EG+V                   S +   +G +    ++ +  +H    + + 
Sbjct: 591 LVSCFYREGKVDEANLVLQKLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWN 650

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            V+  L K G +  AR +  ++   G   +  TY+ L+ G      ID A  L  EM   
Sbjct: 651 IVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLS- 709

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
           A++ P++V+YN LI G     + + A++ FN+++++GI+P  I+Y TL+           
Sbjct: 710 ARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTE 769

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A K+  +M+++  ++  +  + +L+ G C  G +EEA +++++M EN   PN  TY +L 
Sbjct: 770 AFKLKQKMIKEG-IQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLI 828

Query: 436 NG 437
            G
Sbjct: 829 QG 830



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 122/254 (48%), Gaps = 6/254 (2%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+      + K Y  +GRV+     L  M   E+     + V Y  V+    + G  + A
Sbjct: 162 PDDFTVAIMAKAYCRDGRVAHAADFLKEM---EEMGLDVNLVAYHAVMDGYCRIGQTEVA 218

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R++L  +   G+  N +TY +L+KGYC++ ++++A+++++E+ ++ KI  D V+Y  LI+
Sbjct: 219 RKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALIN 278

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-V 389
           G+        A    +EM   G+      Y T++  +    +     K+      + R V
Sbjct: 279 GYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQA--NEYRGV 336

Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
            +D  ++N LV+GYCR G + +A    + M  NGF     TY +L NG        +AL 
Sbjct: 337 NLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALK 396

Query: 450 LWKEIKERCEVKKE 463
           LW  + +R  V  E
Sbjct: 397 LWFLMLKRGVVPNE 410



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 119/536 (22%), Positives = 216/536 (40%), Gaps = 72/536 (13%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  AY A++N     G+ +   ++ D+M + G + ++  YN MI    +  R   +  +L
Sbjct: 269 DEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLL 328

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +     G+ L   ++ +LV  Y   G +  A ET    +R G          L L  + S
Sbjct: 329 QANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTL-LNGFCS 387

Query: 176 ENEGDDDDDDEVFEKLL-----PNSINPS-----------SEPPL------LPKTFAPNS 213
              G  DD  +++  +L     PN I+ S           +E  L      L +  A N 
Sbjct: 388 --RGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNV 445

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
               T++ G     R+++   +     R ++ +   D +TY T++    K G + RA Q+
Sbjct: 446 VTINTVINGLCKNRRMTEAEELF---HRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQI 502

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM  +G   +   +N  + G     Q  K  ++  EM+    + P+ V+Y  LI G+ 
Sbjct: 503 RIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKG-LSPNTVTYGALIAGWC 561

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD-----EMLRD-- 386
              +   A   + EM  +G+ P     + L+  F    +   AN V       +M++D  
Sbjct: 562 KEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCS 621

Query: 387 -PRVKVDIVA-----------------WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
              + +  VA                 WN+++ G C++G V +A+ + E +K  GF P+ 
Sbjct: 622 ASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDN 681

Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
            TY SL +G S +     A  L  E+                L   L P+    ++L   
Sbjct: 682 FTYSSLIHGCSASGSIDLAFGLRDEM----------------LSARLTPNIVTYNSLIYG 725

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRE 544
             ++    +A+ +   ++  GI PN   Y  + ++ H +   +  A + +Q   +E
Sbjct: 726 LCKSCNVSRAVSLFNKLQSKGISPNAITYNTL-IDGHCKDGNTTEAFKLKQKMIKE 780



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 171/400 (42%), Gaps = 23/400 (5%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +  R++++S P        D+  Y  +++    LG   +  Q+  +M   G  P V  +N
Sbjct: 467 LFHRMKEWSCP-------CDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFN 519

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
             I     A +   +  +   +   G++    T+ +L+A +   G+L  A  +   M E 
Sbjct: 520 SFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEK 579

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDD-------DDEVFEKLLPNSINPSSEPPLLPKTFA 210
                  I  + +  +  E + D+ +       D ++ +    +++N      ++     
Sbjct: 580 GLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCSASTLNIGKVAHIIESLAG 639

Query: 211 PNSR----IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
            N +    ++  ++ G    GRV+D   +   ++ +      PD+ TY++++     +GS
Sbjct: 640 GNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVK---GFIPDNFTYSSLIHGCSASGS 696

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +D A  +  EM    +  N +TYN L+ G C+   + +A  L  ++     I P+ ++YN
Sbjct: 697 IDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKG-ISPNAITYN 755

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            LIDG     ++  A     +M   GI PT  +YT L+         + A K+ D+M+ +
Sbjct: 756 TLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIEN 815

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
             V  + + +  L++GY R G ++   ++   M   G  P
Sbjct: 816 -NVDPNFITYWTLIQGYARCGNMKAITKLYNEMHICGLLP 854



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 166/380 (43%), Gaps = 43/380 (11%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P V+ +++ ++ L  +   G V  ++    V    +  S         P+T  Y A+
Sbjct: 510 GFVPSVEMFNSFITGLFIAKQSGKVNDIR----VEMSAKGLS---------PNTVTYGAL 556

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           +      G       L+ +M E G KP++   +V++    R  +      VL+++ +  +
Sbjct: 557 IAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDM 616

Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
                  Q   A+ +  G +     I++++  G     KI+  + +        G   D 
Sbjct: 617 ------IQDCSASTLNIGKVA---HIIESLAGGNHQSAKIMWNIVILGLCKL--GRVADA 665

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
             +FE L               K F P++  Y++L+ G    G    ++ +   +R +  
Sbjct: 666 RNLFEDLKV-------------KGFIPDNFTYSSLIHGCSASG----SIDLAFGLRDEML 708

Query: 245 NAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
           +A   P+ VTY +++  L K+ ++ RA  +  ++   G+  N ITYN L+ G+C+     
Sbjct: 709 SARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTT 768

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A +L ++M  +  I+P V +Y ILI G         A+   ++M    + P  I+Y TL
Sbjct: 769 EAFKLKQKMIKEG-IQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTL 827

Query: 364 MKAFALSSQPKLANKVFDEM 383
           ++ +A     K   K+++EM
Sbjct: 828 IQGYARCGNMKAITKLYNEM 847


>gi|413944087|gb|AFW76736.1| hypothetical protein ZEAMMB73_938811 [Zea mays]
          Length = 496

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 133/256 (51%), Gaps = 12/256 (4%)

Query: 187 VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246
           V  +LL +  +P ++   LP+   PN+ +Y  L+K Y+  G +    ++L  MR      
Sbjct: 161 VLNELLADLRDPRNK--YLPR---PNTCVYNILVKHYVKNGELETAFKVLDEMREYTCAD 215

Query: 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMT---RIGVPANRITYNILLKGYCQQLQID 303
             P+ VTY+T++  L + G M  A ++  EM    RI VP +++ YN+++ G+C+Q Q+D
Sbjct: 216 VKPNLVTYSTLIGGLCRGGKMKEAFELFEEMIEKDRI-VP-DQLLYNVIIDGFCRQGQVD 273

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           KA+ +   M  + + EP+  +Y  LI+G     D   A + F EMR  G+ P  +SYT L
Sbjct: 274 KARAIFGFMRKN-ECEPNTFNYATLINGHCKKADIEAARSVFEEMRNSGVEPDAVSYTAL 332

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +              +  EM ++   + D+V +N+++EG C+ G   EA  ++E +   G
Sbjct: 333 IGCLCRHGSVDEGIGLVLEM-KEKGCRADVVTYNLVIEGLCKDGRTVEAMGLLESVPLEG 391

Query: 424 FYPNVATYGSLANGIS 439
              NVA+Y  L N + 
Sbjct: 392 VKLNVASYRILMNCLC 407



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 4/209 (1%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEM---TRIGVPANRITYNILLKGYCQQLQIDKA 305
           P+   Y  +V   VK G ++ A +VL EM   T   V  N +TY+ L+ G C+  ++ +A
Sbjct: 180 PNTCVYNILVKHYVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKEA 239

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            EL  EM +  +I PD + YN++IDGF        A   F  MR     P   +Y TL+ 
Sbjct: 240 FELFEEMIEKDRIVPDQLLYNVIIDGFCRQGQVDKARAIFGFMRKNECEPNTFNYATLIN 299

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
                +  + A  VF+EM R+  V+ D V++  L+   CR G V+E   ++  MKE G  
Sbjct: 300 GHCKKADIEAARSVFEEM-RNSGVEPDAVSYTALIGCLCRHGSVDEGIGLVLEMKEKGCR 358

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEI 454
            +V TY  +  G+    +  EA+ L + +
Sbjct: 359 ADVVTYNLVIEGLCKDGRTVEAMGLLESV 387



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 134/321 (41%), Gaps = 28/321 (8%)

Query: 129 TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----ENEGDDDD 183
             +  LV  YV  G+LE A  ++  MRE     C  ++  +L  YS+        G   +
Sbjct: 183 CVYNILVKHYVKNGELETAFKVLDEMRE---YTCADVKP-NLVTYSTLIGGLCRGGKMKE 238

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             E+FE+++                  P+  +Y  ++ G+  +G+V     + G MR+ E
Sbjct: 239 AFELFEEMIEKD------------RIVPDQLLYNVIIDGFCRQGQVDKARAIFGFMRKNE 286

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                P+   Y T+++   K   ++ AR V  EM   GV  + ++Y  L+   C+   +D
Sbjct: 287 ---CEPNTFNYATLINGHCKKADIEAARSVFEEMRNSGVEPDAVSYTALIGCLCRHGSVD 343

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +   L+ EM +      DVV+YN++I+G      +  A+     +   G+     SY  L
Sbjct: 344 EGIGLVLEMKEKG-CRADVVTYNLVIEGLCKDGRTVEAMGLLESVPLEGVKLNVASYRIL 402

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           M    L S+ ++   V    L   R  +    A N L+ G C  G + +A   +  + + 
Sbjct: 403 MNC--LCSRGEMDRAVGLLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLADA 460

Query: 423 GFYPNVATYGSLANGISLARK 443
           GF P    +  L   +   RK
Sbjct: 461 GFMPEPRCWERLVESVCRERK 481



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 125/309 (40%), Gaps = 32/309 (10%)

Query: 6   YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVL 65
           +LP +   S V  +  A   D  V S     V+ + +    DP      +P+T  YN ++
Sbjct: 130 FLPALLRTSRVSHKALAVCLDRLVSSRGCHGVLNELLADLRDPRNKYLPRPNTCVYNILV 189

Query: 66  NACANLGKPKKFLQLFDQMHEFGA---KPDVLTYNVMIK-LCARASRKHLLVFVLERILE 121
                 G+ +   ++ D+M E+     KP+++TY+ +I  LC     K       E I +
Sbjct: 190 KHYVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKEAFELFEEMIEK 249

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
             I      +  ++  +   G ++ A  I   MR   ++ C    E +  +Y++   G  
Sbjct: 250 DRIVPDQLLYNVIIDGFCRQGQVDKARAIFGFMR---KNEC----EPNTFNYATLINGHC 302

Query: 182 DDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
              D      VFE++  + + P             ++  YT L+      G V + + ++
Sbjct: 303 KKADIEAARSVFEEMRNSGVEP-------------DAVSYTALIGCLCRHGSVDEGIGLV 349

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M+   +     D VTY  V+  L K G    A  +L  +   GV  N  +Y IL+   
Sbjct: 350 LEMK---EKGCRADVVTYNLVIEGLCKDGRTVEAMGLLESVPLEGVKLNVASYRILMNCL 406

Query: 297 CQQLQIDKA 305
           C + ++D+A
Sbjct: 407 CSRGEMDRA 415



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 25/175 (14%)

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEML---RDPRVKV----DIVAWNMLVEGYCRMGL 408
           +++S+  L          +  + V +E+L   RDPR K     +   +N+LV+ Y + G 
Sbjct: 138 SRVSHKALAVCLDRLVSSRGCHGVLNELLADLRDPRNKYLPRPNTCVYNILVKHYVKNGE 197

Query: 409 VEEAKRIIERMKE---NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
           +E A ++++ M+E       PN+ TY +L  G+    K  EA  L++E+ E+  +     
Sbjct: 198 LETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKEAFELFEEMIEKDRI----- 252

Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                      PD+ L + + D   R     KA  I   M ++   PN   Y  +
Sbjct: 253 ----------VPDQLLYNVIIDGFCRQGQVDKARAIFGFMRKNECEPNTFNYATL 297


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 201/442 (45%), Gaps = 39/442 (8%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHL- 111
           S  DT   N V+NA  + G   + L++  ++  FG + D+++YN ++K LCA      + 
Sbjct: 182 STLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVE 241

Query: 112 -----LVFVLERILEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--------- 154
                +V V E + +M   G T  +  + +++      G  E+A  I+  M         
Sbjct: 242 ELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNV 301

Query: 155 ---REGRRDVCKIIR-----ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL-- 204
                  + +C   R     EL  E Y      DD   + + +    N +       L  
Sbjct: 302 VCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 361

Query: 205 -LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
            L     P+   YTT++ G+  EG + + V +L   +        P+ ++YT V+  L  
Sbjct: 362 MLEHGCMPDVITYTTVINGFCKEGLIDEAVMLL---KNMPSCGCKPNTISYTIVLKGLCS 418

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
                 A ++++ M + G   N +T+N ++   C++  +++A ELL++M  +    PD++
Sbjct: 419 TERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNG-CNPDLI 477

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN--KVFD 381
           SY+ +IDG      +  AL   N M  +GI P  I+Y+++  AFAL+ + ++    ++FD
Sbjct: 478 SYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSM--AFALAREGRIDKVIQMFD 535

Query: 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
             ++D  ++ D V +N ++   C+    + A   +  M  NG  PN +TY +L  G++  
Sbjct: 536 N-IQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASE 594

Query: 442 RKPGEALLLWKEIKERCEVKKE 463
               EA  L  E+  R  V+K 
Sbjct: 595 GLLCEAQDLLSELCSRRAVRKH 616



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 13/257 (5%)

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           ++  P   +Y  +++     G  S  +R+L A+  +    S  D      V++A+   G 
Sbjct: 145 RSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAK---GSTLDTGNCNLVINAICDQGC 201

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD---------DAK 317
           +D   ++L ++   G  A+ ++YN +LKG C   +    +EL+ EM              
Sbjct: 202 VDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHG 261

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
             PD+  Y  +IDG         A    + M + G+ P  + Y T++K    + + + A 
Sbjct: 262 CTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAE 321

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           ++  EM +     +D V +N+LV+ +C+ GLV+    ++E+M E+G  P+V TY ++ NG
Sbjct: 322 ELLTEMYQK-NCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVING 380

Query: 438 ISLARKPGEALLLWKEI 454
                   EA++L K +
Sbjct: 381 FCKEGLIDEAVMLLKNM 397



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 161/368 (43%), Gaps = 32/368 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P ++ ++T++  +   G        ++ + ++ R+  +         KP+   
Sbjct: 257 MAQHGCTPDIRMYATIIDGICKEGHH------EVANEILSRMPSYG-------LKPNVVC 303

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN VL    +  + +K  +L  +M++     D +T+N+++    +      ++ +LE++L
Sbjct: 304 YNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 363

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G    + T+ +++  +   G ++ A  +++ M         I   + L+   S     
Sbjct: 364 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWV 423

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
           D       E+L+   I          +   PN   + T++     +G V   + +L  M 
Sbjct: 424 DA------EELMSRMIQ---------QGCLPNPVTFNTIINFLCKKGLVEQAIELLKQML 468

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               N  +PD ++Y+TV+  L KAG  + A ++L  M   G+  N ITY+ +     ++ 
Sbjct: 469 V---NGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREG 525

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +IDK  ++   +  DA I  D V YN +I       ++  A+ F   M + G  P + +Y
Sbjct: 526 RIDKVIQMFDNI-QDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTY 584

Query: 361 TTLMKAFA 368
           T L+K  A
Sbjct: 585 TALIKGLA 592



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 114/280 (40%), Gaps = 24/280 (8%)

Query: 38  VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
           +V RV +  +  +     PD   Y  V+N     G   + + L   M   G KP+ ++Y 
Sbjct: 351 LVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYT 410

Query: 98  VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMRE 156
           +++K      R      ++ R+++ G      TF +++      G +E A E + Q +  
Sbjct: 411 IVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVN 470

Query: 157 GRRDVCKIIRELDLEDYSS--ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
           G           DL  YS+  +  G     +E  E LL   IN         K   PN  
Sbjct: 471 GCNP--------DLISYSTVIDGLGKAGKTEEALE-LLNVMIN---------KGITPNVI 512

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
            Y+++      EGR+   ++M   +   +D     D V Y  V+S+L K    D A   L
Sbjct: 513 TYSSMAFALAREGRIDKVIQMFDNI---QDATIRSDAVLYNAVISSLCKRRETDLAIDFL 569

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           A M   G   N  TY  L+KG   +  + +A++LL E+  
Sbjct: 570 AYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCS 609



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 49/343 (14%)

Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT-------TLMKGYMNEGRVSDTVRMLG 237
            ++    LP    P S+P   PK  AP + I T       T + G    GR+S  +R L 
Sbjct: 7   SQMLTSSLPPPTLPGSKPATKPKP-APATSISTAATVSADTAVGG--GSGRLSALIRSLC 63

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
              R  D             V AL  AG+                 A  + YN ++ GYC
Sbjct: 64  VAGRTAD------------AVRALDAAGN----------------AAGVVDYNAMVAGYC 95

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  Q++ A    R +A    + P+  +Y  ++ G       A AL   +EM +R   P  
Sbjct: 96  RVGQVEAA----RRLAAAVPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIP 151

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
             Y  ++++   S     A +V  E L      +D    N+++   C  G V+E   ++ 
Sbjct: 152 PMYHVIIESACRSGGYSSALRVL-EALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLR 210

Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
           ++   G   ++ +Y ++  G+  A++ G+   L  E+ +  E   +             P
Sbjct: 211 KLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGC------TP 264

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D  +   + D   +      A EI++ M  +G+ PN   Y  +
Sbjct: 265 DIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTV 307


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 199/467 (42%), Gaps = 71/467 (15%)

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y+ +++    +G   K L +F++  E G  P V+TY  +I L A+  +    + V + + 
Sbjct: 56  YHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEME 115

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             GI   M T+  L+  +                             L L+D+++     
Sbjct: 116 HAGIKHNMKTYSMLINGF-----------------------------LKLKDWANAFA-- 144

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                 +FE L+ + I P             +  +Y  ++  +   G++   V  +  M+
Sbjct: 145 ------IFEDLIKDGIKP-------------DVVLYNNIITAFCGMGKMDRAVCTVKEMQ 185

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +Q      P   T+  ++    + G M +A  V   M   G      TYN L+ G  ++ 
Sbjct: 186 KQRHK---PTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKR 242

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           +++KA+++L EM   A + P+  +Y  ++ G+  + D+  A  +F ++R  G+     +Y
Sbjct: 243 KMEKAEQILDEMTL-AGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTY 301

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+KA   S + + A  V  EM     +  +   +N+L++G+ R G V EA  ++++MK
Sbjct: 302 EALLKACCKSGRMQSALAVTKEM-SAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMK 360

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
             G  P++ TY S  N  S   K G+     K I+E   +K  GV          KP+ +
Sbjct: 361 REGVQPDIHTYTSFINACS---KAGDMQRATKTIEE---MKSVGV----------KPNVK 404

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
               L +   RA+   KAL     M+  G+ P++  Y  +   + SR
Sbjct: 405 TYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSR 451



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 157/350 (44%), Gaps = 28/350 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    Y  ++N  A LGK  K L++  +M   G K ++ TY+++I    +         +
Sbjct: 86  PSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAI 145

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            E +++ GI   +  + +++ A+ G G ++ A   V+ M++ R       R      +  
Sbjct: 146 FEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHK--PTTRTFMPIIHGF 203

Query: 176 ENEGDDDDDDEVFEKLLPNSINPS-------------------SEPPLLPKTFA---PNS 213
             +G+     +VF+ +  +   P+                   +E  L   T A   PN 
Sbjct: 204 ARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNE 263

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             YTT+M GY + G   DT +      +  D     D  TY  ++ A  K+G M  A  V
Sbjct: 264 HTYTTIMHGYASLG---DTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAV 320

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             EM+   +P N   YNIL+ G+ ++  + +A +L+++M  +  ++PD+ +Y   I+   
Sbjct: 321 TKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREG-VQPDIHTYTSFINACS 379

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
              D   A     EM++ G+ P   +YTTL+  +A +S P+ A   F+EM
Sbjct: 380 KAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEM 429



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 22/330 (6%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           IY T+M GY     V D  + L    R ++   +P  +TY  +++   K G + +A +V 
Sbjct: 55  IYHTMMDGYT---MVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVS 111

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM   G+  N  TY++L+ G+ +      A  +  ++  D  I+PDVV YN +I  F  
Sbjct: 112 KEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDG-IKPDVVLYNNIITAFCG 170

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
           +     A+    EM+ +   PT  ++  ++  FA   + K A  VFD M+R       + 
Sbjct: 171 MGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFD-MMRMSGCIPTVH 229

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +N L+ G      +E+A++I++ M   G  PN  TY ++ +G +     G+A   + ++
Sbjct: 230 TYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKL 289

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
           ++      EG          L+ D    +AL   C ++   + AL +   M    IP N 
Sbjct: 290 RD------EG----------LQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT 333

Query: 515 TKYKKIYVEMHSRMFTSKHASQARQDRRRE 544
             Y  I ++  +R      A+   Q  +RE
Sbjct: 334 FIY-NILIDGWARRGDVWEAADLMQQMKRE 362



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 137/349 (39%), Gaps = 43/349 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIV--------- 51
           ML +G+L  +K W+   +       DG    V L++ ++         D           
Sbjct: 128 MLINGFLK-LKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQK 186

Query: 52  SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
              KP T  +  +++  A  G+ KK L +FD M   G  P V TYN +I       +   
Sbjct: 187 QRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEK 246

Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
              +L+ +   G++    T+ +++  Y   GD   A      +R+           L L+
Sbjct: 247 AEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRD---------EGLQLD 297

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-------FAPNSRIYTTLMKGYM 224
            Y+             +E LL            L  T          N+ IY  L+ G+ 
Sbjct: 298 VYT-------------YEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWA 344

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
             G V +   ++  M+R+      PD  TYT+ ++A  KAG M RA + + EM  +GV  
Sbjct: 345 RRGDVWEAADLMQQMKRE---GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKP 401

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           N  TY  L+ G+ +    +KA     EM     ++PD   Y+ L+   +
Sbjct: 402 NVKTYTTLINGWARASLPEKALSCFEEMKLSG-LKPDRAVYHCLMTSLL 449



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 2/173 (1%)

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           N I Y  ++  YCQ+  +DKA+ L+REM ++  I+  +  Y+ ++DG+ ++ D    L  
Sbjct: 17  NAIIYGNIIYAYCQRCNMDKAEALVREMEEEG-IDAPIDIYHTMMDGYTMVGDEDKCLLV 75

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F   +  G+ P+ I+Y  L+  +A   +   A +V  EM     +K ++  ++ML+ G+ 
Sbjct: 76  FERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEM-EHAGIKHNMKTYSMLINGFL 134

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++     A  I E + ++G  P+V  Y ++        K   A+   KE++++
Sbjct: 135 KLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQ 187



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
           +F E + +  +   I Y  ++ A+        A  +  EM  +  +   I  ++ +++GY
Sbjct: 5   WFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREM-EEEGIDAPIDIYHTMMDGY 63

Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
             +G  ++   + ER KE G  P+V TYG L N  +   K  +AL + KE++ 
Sbjct: 64  TMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEH 116


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 189/406 (46%), Gaps = 26/406 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
           KPD  AYNA+++      + +   ++ D+M   G  PDV+TYN+MI   C+R  +  L +
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRG-KLDLAL 193

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            + E +L+      + T+  L+ A +  G +++A  ++  M            E D   Y
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKG-------LEPDTLTY 246

Query: 174 SSENEGDDDD--DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
           ++   G   +   D+ FE L            L  +   P+   Y  L++  ++ G+ S+
Sbjct: 247 NAIIRGMCKEMMVDKAFELL----------RSLSSRGCKPDIITYNILLRTLLSRGKWSE 296

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
             +++  M         P+ VT++ ++  L + G ++ A  +L  M   G+  +   Y+ 
Sbjct: 297 GEKLISEMISI---GCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDP 353

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G+C++ ++D A E L  M  D  + PD+V+YN ++ G      +  AL  F ++   
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCL-PDIVNYNTIMAGLCRTGKADQALEVFEKLDEV 412

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G  P   SY TL  A   S     A ++  ++L +  +  D + +N L+   CR G+V+E
Sbjct: 413 GCPPNVSSYNTLFSALWSSGDRYRALEMILKLL-NQGIDPDEITYNSLISCLCRDGMVDE 471

Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           A  ++  M+   + PNV +Y  +  G+    +  +A+ +   + E+
Sbjct: 472 AIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEK 517



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 161/351 (45%), Gaps = 43/351 (12%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ K + P+  + T L+KG+ N   +    R++  + R       PD   Y  ++S  +K
Sbjct: 95  MVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERY----GKPDVFAYNALISGFIK 150

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           A  ++ A +VL  M   G   + +TYNI++  +C + ++D A E+  E+  D   EP V+
Sbjct: 151 ANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKD-NCEPTVI 209

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y ILI+  IL      A+   +EM ++G+ P  ++Y  +++      +  + +K F E+
Sbjct: 210 TYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC---KEMMVDKAF-EL 265

Query: 384 LRDPR---VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
           LR       K DI+ +N+L+      G   E +++I  M   G  PNV T+  L   +  
Sbjct: 266 LRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCR 325

Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL-----------KPDEELLDALADIC 489
             K  EA+ L + +KE+      G+  D+    PL              E L   ++D C
Sbjct: 326 DGKVEEAVNLLRSMKEK------GLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGC 379

Query: 490 ---------VRAAFFR-----KALEIVACMEEHGIPPNKTKYKKIYVEMHS 526
                    + A   R     +ALE+   ++E G PPN + Y  ++  + S
Sbjct: 380 LPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWS 430



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/461 (22%), Positives = 205/461 (44%), Gaps = 37/461 (8%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           +LN     GK  + L   + M + G  PDV+    +IK    +        V+E ILE  
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVME-ILERY 133

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
               +  + +L++ ++    LE A  ++  M+   R     +   ++   S  + G  D 
Sbjct: 134 GKPDVFAYNALISGFIKANQLENANRVLDRMKS--RGFLPDVVTYNIMIGSFCSRGKLDL 191

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
             E+FE+LL ++  P+                YT L++  + +G +   +++L  M  + 
Sbjct: 192 ALEIFEELLKDNCEPTV-------------ITYTILIEATILDGGIDVAMKLLDEMLSK- 237

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                PD +TY  ++  + K   +D+A ++L  ++  G   + ITYNILL+    + +  
Sbjct: 238 --GLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWS 295

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           + ++L+ EM      +P+VV+++ILI           A+     M+ +G+ P    Y  L
Sbjct: 296 EGEKLISEMIS-IGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPL 354

Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +  F    +  LA +  + M+ D  +  DIV +N ++ G CR G  ++A  + E++ E G
Sbjct: 355 IAGFCREGRLDLATEFLEYMISDGCLP-DIVNYNTIMAGLCRTGKADQALEVFEKLDEVG 413

Query: 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD 483
             PNV++Y +L    S     G+    ++ ++   ++  +G++          PDE   +
Sbjct: 414 CPPNVSSYNTL---FSALWSSGDR---YRALEMILKLLNQGID----------PDEITYN 457

Query: 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
           +L     R     +A+E++  M+     PN   Y  I + +
Sbjct: 458 SLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGL 498



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 144/324 (44%), Gaps = 35/324 (10%)

Query: 55  KPDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           +PDT  YNA++   C  +   K F +L   +   G KPD++TYN++++      +     
Sbjct: 240 EPDTLTYNAIIRGMCKEMMVDKAF-ELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGE 298

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            ++  ++ +G    + T   L+      G +E A  ++++M+E         + L  + Y
Sbjct: 299 KLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKE---------KGLKPDAY 349

Query: 174 SSE-------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
             +        EG  D   E  E ++ +                P+   Y T+M G    
Sbjct: 350 CYDPLIAGFCREGRLDLATEFLEYMISDGC-------------LPDIVNYNTIMAGLCRT 396

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           G+     + L    + ++    P+  +Y T+ SAL  +G   RA +++ ++   G+  + 
Sbjct: 397 GKAD---QALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDE 453

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           ITYN L+   C+   +D+A ELL +M    +  P+VVSYNI++ G   ++ +  A+    
Sbjct: 454 ITYNSLISCLCRDGMVDEAIELLVDM-QSGRYRPNVVSYNIILLGLCKVNRANDAIEVLA 512

Query: 347 EMRARGIAPTKISYTTLMKAFALS 370
            M  +G  P + +Y  L++    S
Sbjct: 513 AMTEKGCQPNETTYILLIEGIGFS 536



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 127/270 (47%), Gaps = 6/270 (2%)

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD--TVRMLGAMRRQEDNAS 247
           + LP+SI+ +++P L P + + +S I + +     +  +V +   VR+    R+    + 
Sbjct: 7   EFLPHSISFTTQP-LKPTSNSLHSTIVSCIRPELNDANKVRNPQKVRVSAETRQTHVLSF 65

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
               V    +++   +AG  + +   L  M   G   + I    L+KG+     I KA  
Sbjct: 66  DFKEVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATR 125

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           ++  +    K  PDV +YN LI GFI  +    A    + M++RG  P  ++Y  ++ +F
Sbjct: 126 VMEILERYGK--PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSF 183

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
               +  LA ++F+E+L+D   +  ++ + +L+E     G ++ A ++++ M   G  P+
Sbjct: 184 CSRGKLDLALEIFEELLKD-NCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPD 242

Query: 428 VATYGSLANGISLARKPGEALLLWKEIKER 457
             TY ++  G+       +A  L + +  R
Sbjct: 243 TLTYNAIIRGMCKEMMVDKAFELLRSLSSR 272



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 14/140 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G  P+V +++T+ S L +SGD       +  ++++K + +  DPD ++        YN++
Sbjct: 413 GCPPNVSSYNTLFSALWSSGD-----RYRALEMILKLLNQGIDPDEIT--------YNSL 459

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
           ++     G   + ++L   M     +P+V++YN+++    + +R +  + VL  + E G 
Sbjct: 460 ISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGC 519

Query: 125 TLCMTTFQSLVAAYVGFGDL 144
               TT+  L+   +GF  L
Sbjct: 520 QPNETTYILLIEG-IGFSGL 538


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 120/547 (21%), Positives = 216/547 (39%), Gaps = 130/547 (23%)

Query: 34  LFDVVVKRVRKFSDPDIVSDS-----KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
           L +V++K+ R     + VS+       P+   Y ++++    +GK    L++F  M   G
Sbjct: 340 LINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEG 399

Query: 89  AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
            +P+  TY+ +I    +  + H  + ++ ++ E GIT  + T+ +L+             
Sbjct: 400 CRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLI------------- 446

Query: 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208
                  +G+   CK              + + D+   +FE +  N + P  +       
Sbjct: 447 -------QGQ---CK--------------KHEFDNAFRLFEMMEQNGLTPDEQA------ 476

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
                  Y  L       GR  +    L  +R+          VTYT++V    KAG+ D
Sbjct: 477 -------YNVLTHALCKSGRAEEAYSFL--VRK----GVVLTKVTYTSLVDGFSKAGNTD 523

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
            A  ++ +M   G  A+  TY++LL+  C+Q ++++A  +L +M     ++ ++V+Y I+
Sbjct: 524 FAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSG-VKCNIVAYTII 582

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I   I       A + FNEM + G  P+  +YT  + ++    Q + A  +  EM RD  
Sbjct: 583 ISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG- 641

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEA----KRII---------------------------- 416
           V  D+V +N+ + G   MG ++ A    KR+I                            
Sbjct: 642 VAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHY 701

Query: 417 -------------------ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
                              ERM ++G  P   TY S+  G   A +  EA +L+  ++ +
Sbjct: 702 VDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGK 761

Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
                            + P+EE+   L   C     F KA+  V  M E G  P+   Y
Sbjct: 762 ----------------DISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESY 805

Query: 518 KKIYVEM 524
             + V +
Sbjct: 806 HYLIVGL 812



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 170/383 (44%), Gaps = 38/383 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARA--SRKHLL 112
           P    YNA+++     G+ K  L +   M   G  PD  TYN++I  LC       + LL
Sbjct: 228 PSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPDEAEELL 287

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
              + R    G T  + TF +++  Y     ++ A  +  +M       CK    LDL+ 
Sbjct: 288 NDAIVR----GFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSN---CK----LDLQA 336

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF----APNSRIYTTLMKGYMNEGR 228
           Y             V   +L            + + F    APN  IYT+++ GY   G+
Sbjct: 337 YG------------VLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGK 384

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           V   + +    R  E     P+  TY++++  L++   + +A  ++ +M   G+    IT
Sbjct: 385 VGAALEVF---RLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVIT 441

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y  L++G C++ + D A  L  EM +   + PD  +YN+L         +  A +F   +
Sbjct: 442 YTTLIQGQCKKHEFDNAFRLF-EMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSF---L 497

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
             +G+  TK++YT+L+  F+ +     A  + ++M+ +   K D   +++L++  C+   
Sbjct: 498 VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG-CKADSYTYSVLLQALCKQKK 556

Query: 409 VEEAKRIIERMKENGFYPNVATY 431
           + EA  I+++M  +G   N+  Y
Sbjct: 557 LNEALSILDQMTLSGVKCNIVAY 579



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 186/451 (41%), Gaps = 42/451 (9%)

Query: 75  KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134
           ++ L L   M + G   ++ TY ++IK   +  R H    VLE +   G+   + T+ ++
Sbjct: 177 REALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAM 236

Query: 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPN 194
           +  Y   G ++ A  I   M    R+ C      D   Y+    G   +  +  E+LL +
Sbjct: 237 IDGYCKSGRMKDALGIKALM---ERNGCNP----DDWTYNILIYGLCGEKPDEAEELLND 289

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
           +I          + F P    +T ++ GY    R+ D +R+  +M          D   Y
Sbjct: 290 AI---------VRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSN---CKLDLQAY 337

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
             +++ L+K      A++ ++EM   G+  N + Y  ++ GYC+  ++  A E+ R M  
Sbjct: 338 GVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEH 397

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +    P+  +Y+ LI G I       A+    +M+  GI P  I+YTTL++      +  
Sbjct: 398 EG-CRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFD 456

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A ++F EM+    +  D  A+N+L    C+ G  EEA   + R    G      TY SL
Sbjct: 457 NAFRLF-EMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVR---KGVVLTKVTYTSL 512

Query: 435 ANGISLARKPG-EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
            +G S A      A+L+ K + E C                 K D      L     +  
Sbjct: 513 VDGFSKAGNTDFAAVLIEKMVNEGC-----------------KADSYTYSVLLQALCKQK 555

Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
              +AL I+  M   G+  N   Y  I  EM
Sbjct: 556 KLNEALSILDQMTLSGVKCNIVAYTIIISEM 586



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 99/468 (21%), Positives = 166/468 (35%), Gaps = 106/468 (22%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P    Y  ++       +     +LF+ M + G  PD   YNV+   LC     +    F
Sbjct: 437 PGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSF 496

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRD-----------VC 162
           ++ +    G+ L   T+ SLV  +   G+ + A  +++ M  EG +            +C
Sbjct: 497 LVRK----GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALC 552

Query: 163 K---------IIRELDLEDYSSE------------NEGDDDDDDEVFEKLLPNSINPSSE 201
           K         I+ ++ L                   EG  D    +F +++ +   PS+ 
Sbjct: 553 KQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAT 612

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
                         YT  +  Y   G++ +   ++G M R   +   PD VTY   ++  
Sbjct: 613 T-------------YTVFISSYCKIGQIEEAEHLIGEMER---DGVAPDVVTYNVFINGC 656

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLK----------------GYCQQLQIDKA 305
              G MDRA   L  M       N  TY ILLK                G    +++D  
Sbjct: 657 GHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTV 716

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
            +LL  M     + P  V+Y+ +I GF        A   F+ MR + I+P +  YT L+K
Sbjct: 717 WQLLERMVKHG-LNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIK 775

Query: 366 AFA-----------------LSSQPKL------------------ANKVFDEMLRDPRVK 390
                                  QP L                  A  +F ++L      
Sbjct: 776 CCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYN 835

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
            + VAW +L +G  + G V+   +++  M+      +  TY  + + I
Sbjct: 836 HNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYSMVTDNI 883



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 126/302 (41%), Gaps = 52/302 (17%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
           +YT ++  L +   +  A  +L  M + G   N  TY +L+KG C++ +I  A+ +L EM
Sbjct: 162 SYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEM 221

Query: 313 ADDAKIEPDVVSYNILIDGF-----------------------------ILIDDSAG--- 340
                + P V +YN +IDG+                             ILI    G   
Sbjct: 222 PLRGVV-PSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKP 280

Query: 341 --ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
             A    N+   RG  PT I++T ++  +  + +   A +V   ML     K+D+ A+ +
Sbjct: 281 DEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSML-SSNCKLDLQAYGV 339

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
           L+    +    +EAK  +  M  NG  PNV  Y S+ +G     K G AL +++ ++   
Sbjct: 340 LINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEH-- 397

Query: 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
               EG           +P+     +L    ++     KA+ ++  M+E GI P    Y 
Sbjct: 398 ----EGC----------RPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYT 443

Query: 519 KI 520
            +
Sbjct: 444 TL 445



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 19/257 (7%)

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G + +A  +L  M  +G   N  +Y IL++G C+   + +A  LL  M  D     ++ 
Sbjct: 138 GGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDG-CSLNLH 196

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           +Y +LI G        GA     EM  RG+ P+  +Y  ++  +  S + K A  +   M
Sbjct: 197 TYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALM 256

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            R+     D   +N+L+ G C     +EA+ ++      GF P V T+ ++ NG   A +
Sbjct: 257 ERNG-CNPDDWTYNILIYGLCGEK-PDEAEELLNDAIVRGFTPTVITFTNIINGYCKAER 314

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             +AL           VK       S L    K D +    L ++ ++   F++A E V+
Sbjct: 315 IDDAL----------RVKT------SMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVS 358

Query: 504 CMEEHGIPPNKTKYKKI 520
            M  +G+ PN   Y  I
Sbjct: 359 EMFANGLAPNVVIYTSI 375



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/348 (18%), Positives = 136/348 (39%), Gaps = 54/348 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG   ++ A++ ++S +   G     +S  +F+ ++            S  KP    
Sbjct: 567 MTLSGVKCNIVAYTIIISEMIKEGKHDHAKS--MFNEMIS-----------SGHKPSATT 613

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y   +++   +G+ ++   L  +M   G  PDV+TYNV I  C            L+R++
Sbjct: 614 YTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMI 673

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           +        T+  L+  ++    ++        M                      N  +
Sbjct: 674 DASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMW---------------------NWIE 712

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D   ++ E+++ + +NP++               Y++++ G+    R+ +   +   MR
Sbjct: 713 LDTVWQLLERMVKHGLNPTAVT-------------YSSIIAGFCKATRLEEACVLFDHMR 759

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
            ++ +   P+   YT ++          +A   + +M   G   +  +Y+ L+ G C + 
Sbjct: 760 GKDIS---PNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEG 816

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
             DKAK L  ++        + V++ IL DG +     AG + F +++
Sbjct: 817 DYDKAKSLFCDLLGMEDYNHNEVAWKILNDGLL----KAGHVDFCSQL 860


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 186/420 (44%), Gaps = 28/420 (6%)

Query: 34  LFDVVVKRVRKFS------DPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87
           LF +V  ++R+F+      D  + S    D   Y A + A            L  +M   
Sbjct: 170 LFSLV--KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESE 227

Query: 88  GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147
           G K   + YNV++    +  R    V V   ++ +G+T    T+++LV  +    +LE+A
Sbjct: 228 GVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMA 287

Query: 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPK 207
             I   M             + L    SE       D+   ++L+  + + + +  L   
Sbjct: 288 LRITHDM-------------IRLGFVPSEANCSFMIDELRKKELVEEAFSLACK--LGDL 332

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
              PN   Y  L+       R  D  R+   M  +      P+ VTY  ++ AL K G +
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGR---GLEPNEVTYAILIHALCKRGMI 389

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           + A  +  +M   G+      YN L+ GYC+Q  +D+A+ LL  M  +  + P   SY+ 
Sbjct: 390 EDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG-LTPTAASYSP 448

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI G     D + A+    EM  RGIA    ++T L+  F    +   A ++FD+M+ D 
Sbjct: 449 LIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMI-DS 507

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
            V  + V +N+++EGYC +G + +A ++ ++M E G  P+  TY SL +G+ L     +A
Sbjct: 508 NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKA 567



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 175/425 (41%), Gaps = 60/425 (14%)

Query: 30  ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
           E+ +LFD       K  D +++    P+   +N ++     +G  +K  QL+DQM E G 
Sbjct: 496 EAARLFD-------KMIDSNVI----PNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGL 544

Query: 90  KPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148
           KPD  TY  +I  LC                L  G++        L  +Y    +  +  
Sbjct: 545 KPDNYTYRSLISGLC----------------LTSGVSKANEFVADLENSYAVLNNFSLTA 588

Query: 149 TIVQAMREGR-------------RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNS 195
            +    REGR             R V   +    +  Y++  + D +    +F ++    
Sbjct: 589 LLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQG 648

Query: 196 INPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
           +              P+   YT ++     E    + ++ L    +   +   P+ VT+T
Sbjct: 649 VK-------------PDDIFYTCMIDALSKE---ENMIQALNCWDQMVIDGYSPNTVTHT 692

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            +++ L K+G +  A  +  EM    V  N+ TYN  L  +  +  ++KAK+L   M   
Sbjct: 693 VLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQG 752

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
                 +VS+NILI G         A+    ++   G +P  ISY+T++           
Sbjct: 753 HL--ASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINK 810

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           A ++++EML    +K D+VA+N+ +      G  ++A  I   M  +G  PN  TY +L 
Sbjct: 811 AFELWNEMLYKG-LKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALL 869

Query: 436 NGISL 440
           +GISL
Sbjct: 870 SGISL 874



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 149/359 (41%), Gaps = 57/359 (15%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           +YT  ++ Y  E R  D  R  G + R E        V Y  ++  L K   +  A +V 
Sbjct: 200 VYTAGIRAYC-ESRNLDGAR--GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVK 256

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKA----------------------------K 306
             M  IGV A+ +TY  L+ G+C+  +++ A                            K
Sbjct: 257 NVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKK 316

Query: 307 ELLREMAD------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
           EL+ E         D  + P+V +YN LID     +    A   F EM  RG+ P +++Y
Sbjct: 317 ELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTY 376

Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
             L+ A       + A  +FD+M RD  +KV +  +N L+ GYC+ G ++ A+ ++  M 
Sbjct: 377 AILIHALCKRGMIEDALCLFDKM-RDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMV 435

Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------CEVKKEG 464
           + G  P  A+Y  L  G+        A+ L +E+ ER                C+ KK  
Sbjct: 436 KEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMD 495

Query: 465 VNA---DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             A   D  +   + P+E   + + +        RKA ++   M E G+ P+   Y+ +
Sbjct: 496 EAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSL 554



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 131/599 (21%), Positives = 227/599 (37%), Gaps = 103/599 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRL-------------AASGDDGPVESVKLFDVVVKRVRK--- 44
           M+R G++P     S ++  L                GD G V +V  ++ ++ ++ K   
Sbjct: 294 MIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNER 353

Query: 45  FSDPDIVSDS------KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           F D D +         +P+   Y  +++A    G  +  L LFD+M + G K  V  YN 
Sbjct: 354 FDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNS 413

Query: 99  MIK--------------------------------LCARASRKHLLVFVLERILEM---G 123
           +I                                 L A   R   L   +E   EM   G
Sbjct: 414 LINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERG 473

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIA---------------ETIVQAMREGRRDVCKIIREL 168
           I     TF +L+  +     ++ A               E     M EG   V  I +  
Sbjct: 474 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 533

Query: 169 DLEDYSSENEGDDDDDDEVFEKL-----LPNSINPSSEPPL-LPKTFAP-NSRIYTTLMK 221
            L  Y    E     D+  +  L     L + ++ ++E    L  ++A  N+   T L+ 
Sbjct: 534 QL--YDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLY 591

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G   EGR ++T  +   M  +       D V++T +V A +K    +++  +  EM   G
Sbjct: 592 GLFREGRFTETYHLWDEMAVR---GVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQG 648

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           V  + I Y  ++    ++  + +A     +M  D    P+ V++ +LI+          A
Sbjct: 649 VKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDG-YSPNTVTHTVLINNLCKSGYLGSA 707

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
                EM A  + P K +Y   +  FA     + A  +   ML+       IV++N+L++
Sbjct: 708 ELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLAS--IVSFNILIK 765

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           G C+ G ++EA  ++ ++ E+GF P+  +Y ++ + +       +A  LW E+       
Sbjct: 766 GLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM------- 818

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                    L   LKPD    +     C       KAL I   M   G+ PN   Y+ +
Sbjct: 819 ---------LYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRAL 868



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 96/485 (19%), Positives = 195/485 (40%), Gaps = 45/485 (9%)

Query: 55  KPDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           K     YN ++   C N+ + ++ +++ + M   G   D +TY  ++    R     + +
Sbjct: 230 KASAVPYNVLMYGLCKNM-RVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 114 FVLERILEMGIT----LCMTTFQSL---------VAAYVGFGDLEIAETIVQAMREGRRD 160
            +   ++ +G       C      L          +     GDL +   +  A       
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVF-AYNALIDK 347

Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSS--EPPLL------PKTFAPN 212
           +CK  R  D +    E  G   + +EV   +L +++      E  L        K     
Sbjct: 348 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 407

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
              Y +L+ GY  +G +     +L  M ++      P   +Y+ +++ L + G +  A +
Sbjct: 408 VYPYNSLINGYCKQGSLDRARGLLSGMVKE---GLTPTAASYSPLIAGLCRNGDLSSAME 464

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +  EM   G+  N  T+  L+ G+C+  ++D+A  L  +M  D+ + P+ V++N++I+G+
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMI-DSNVIPNEVTFNVMIEGY 523

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
            L+ +   A   +++M   G+ P   +Y +L+    L+S    AN+ F   L +    ++
Sbjct: 524 CLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANE-FVADLENSYAVLN 582

Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
             +   L+ G  R G   E   + + M   G   ++ ++  +           ++ +L++
Sbjct: 583 NFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFR 642

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           E+KE      +GV          KPD+     + D   +     +AL     M   G  P
Sbjct: 643 EMKE------QGV----------KPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSP 686

Query: 513 NKTKY 517
           N   +
Sbjct: 687 NTVTH 691



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 2/208 (0%)

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
           +  T + ++ +LVK      AR +  +M + GV  +   Y   ++ YC+   +D A+ L+
Sbjct: 162 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 221

Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
             M  +  ++   V YN+L+ G         A+   N M   G+   +++Y TL+  F  
Sbjct: 222 VRMESEG-VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCR 280

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
             + ++A ++  +M+R   V  +    + +++   +  LVEEA  +  ++ + G  PNV 
Sbjct: 281 MEELEMALRITHDMIRLGFVPSE-ANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVF 339

Query: 430 TYGSLANGISLARKPGEALLLWKEIKER 457
            Y +L + +    +  +A  L+KE+  R
Sbjct: 340 AYNALIDKLCKNERFDDADRLFKEMAGR 367



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 29/162 (17%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGD------------DGPVESVKLFDVVVKRV------ 42
           ML    LP+   ++  +   A  GD             G + S+  F++++K +      
Sbjct: 714 MLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKI 773

Query: 43  -------RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
                  RK ++    S   PD  +Y+ +++    +G   K  +L+++M   G KPDV+ 
Sbjct: 774 QEAIDLMRKITE----SGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA 829

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
           YN+ I+ C         + +   ++  G+     T+++L++ 
Sbjct: 830 YNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871


>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
 gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
 gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
 gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 144/304 (47%), Gaps = 23/304 (7%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
           F P        M   + +GRV   +R    MRR + +   P+  T   V+S   ++G +D
Sbjct: 199 FLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKIS---PNPYTLNMVMSGYCRSGKLD 255

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
           +  ++L +M R+G  A  ++YN L+ G+C++  +  A +L + M   + ++P+VV++N L
Sbjct: 256 KGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKL-KNMMGKSGLQPNVVTFNTL 314

Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
           I GF        A   F EM+A  +AP  ++Y TL+  ++     ++A + +++M+ +  
Sbjct: 315 IHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNG- 373

Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
           ++ DI+ +N L+ G C+     +A + ++ + +    PN +T+ +L  G  + +      
Sbjct: 374 IQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGF 433

Query: 449 LLWKE-IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
            L+K  I+  C                  P+E+  + L     R   F  A +++  M  
Sbjct: 434 ELYKSMIRSGCH-----------------PNEQTFNMLVSAFCRNEDFDGASQVLREMVR 476

Query: 508 HGIP 511
             IP
Sbjct: 477 RSIP 480



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 110/241 (45%), Gaps = 8/241 (3%)

Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
           Y TL+ G+  +G +S  +++   M +   +   P+ VT+ T++    +A  +  A +V  
Sbjct: 276 YNTLIAGHCEKGLLSSALKLKNMMGK---SGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           EM  + V  N +TYN L+ GY QQ   + A     +M  +  I+ D+++YN LI G    
Sbjct: 333 EMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNG-IQRDILTYNALIFGLCKQ 391

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
             +  A  F  E+    + P   +++ L+    +        +++  M+R      +   
Sbjct: 392 AKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSG-CHPNEQT 450

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           +NMLV  +CR    + A +++  M       +  T   + NG+   +  G+  L+ K ++
Sbjct: 451 FNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGL---KHQGKDQLVKKLLQ 507

Query: 456 E 456
           E
Sbjct: 508 E 508



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           +YN ++      G     L+L + M + G +P+V+T+N +I    RA +      V   +
Sbjct: 275 SYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEM 334

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
             + +     T+ +L+  Y   GD E+A    + M      VC  I+  D+  Y++    
Sbjct: 335 KAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDM------VCNGIQR-DILTYNAL--- 384

Query: 180 DDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
                  +F          +++    L  +   PNS  ++ L+ G            +  
Sbjct: 385 -------IFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYK 437

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           +M R   +  HP+  T+  +VSA  +    D A QVL EM R  +P +  T + +  G  
Sbjct: 438 SMIR---SGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLK 494

Query: 298 QQLQIDKAKELLREM 312
            Q +    K+LL+EM
Sbjct: 495 HQGKDQLVKKLLQEM 509



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M +SG  P+V  ++T++         G   ++KL +      + F +   V +  P+T  
Sbjct: 299 MGKSGLQPNVVTFNTLI--------HGFCRAMKLQEAS----KVFGEMKAV-NVAPNTVT 345

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLE 117
           YN ++N  +  G  +   + ++ M   G + D+LTYN +I  LC +A  +    FV E
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKE 403


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/491 (22%), Positives = 207/491 (42%), Gaps = 74/491 (15%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           V+NA    G  ++ L+ F ++ EFG KP V  YN ++      ++  ++  +   +   G
Sbjct: 114 VINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDG 173

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
           I L + T+  L+ A      ++ A  ++  M                  Y          
Sbjct: 174 IELNVYTYNMLLKALCKNDRVDAARKLLAEM-----------------SYKGCIPDAVSY 216

Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
              V        +  + E  +  K+F P   +Y  L+ G+  E ++ +   +   M  + 
Sbjct: 217 TTVVSSMCRLGKVEEARELSMRIKSFVP---VYNALINGFCREHKMEEVFELFNEMAVE- 272

Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
                PD +TY+TV++ L + G+++ A  VLA+M   G   N  T+  L+KGY    ++ 
Sbjct: 273 --GIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLC 330

Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
           +A +L   M  +   EP+ V+YN LI G         A++   +M   G+ P + +Y+TL
Sbjct: 331 EALDLWNRMIQEGS-EPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTL 389

Query: 364 MKAFALSSQPKLANKVFDEMLRD---PRVKV----------------------------- 391
           +  FA +     A++++++M+ +   P V V                             
Sbjct: 390 IDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNC 449

Query: 392 --DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
             + + +N  ++G C  G  E A +++ +M++ G  PNV TY  + +G+  A++  EAL 
Sbjct: 450 PPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQ 509

Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
           +  EI+E  E+K   V  ++               L+  C  A  F+ AL+I   +   G
Sbjct: 510 IVGEIEEM-EIKSNLVTYNT--------------ILSGFC-HAGMFKGALQIAGKLLVGG 553

Query: 510 IPPNKTKYKKI 520
             P+   Y  +
Sbjct: 554 TKPDSITYNTV 564



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 189/472 (40%), Gaps = 70/472 (14%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G +P   +++TVVS +   G    VE  +   +   R++ F               
Sbjct: 204 MSYKGCIPDAVSYTTVVSSMCRLGK---VEEARELSM---RIKSF------------VPV 245

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNA++N      K ++  +LF++M   G  PDV+TY+ +I   +      + + VL ++ 
Sbjct: 246 YNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMF 305

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G +  + TF SL+  Y   G L  A  +   M +   +   +     +    S   G 
Sbjct: 306 LRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSY--GK 363

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             +   V +K+  N +              PN   Y+TL+ G+   G   D V       
Sbjct: 364 MVEAVSVSQKMERNGV-------------FPNETTYSTLIDGFAKAG---DLVGASEIWN 407

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           +   N   P+ V YT +V  L +    + A  ++  M     P N IT+N  +KG C   
Sbjct: 408 KMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSG 467

Query: 301 QIDKAKELLREM----------------------------------ADDAKIEPDVVSYN 326
           + + A ++L +M                                   ++ +I+ ++V+YN
Sbjct: 468 KTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYN 527

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
            ++ GF       GAL    ++   G  P  I+Y T++ A+    + K A ++ D + + 
Sbjct: 528 TILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKK 587

Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
                D+  +  L+ G C    V+EA   +++M   G  PN AT+ +L  G+
Sbjct: 588 GEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGL 639



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 187/436 (42%), Gaps = 65/436 (14%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCAR----ASR 108
            KP    YN VL+A  +  K +    +++ M   G + +V TYN+++K LC      A+R
Sbjct: 139 CKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAAR 198

Query: 109 KHLLVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIA-------ETIVQAMREGR 158
           K L         EM    C+    ++ ++V++    G +E A       ++ V       
Sbjct: 199 KLL--------AEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALI 250

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSI----NPSSEPPLLPKTF----A 210
              C+  +  ++ +  +E   +  D D +    + N++    N      +L K F    +
Sbjct: 251 NGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCS 310

Query: 211 PNSRIYTTLMKGYMNEGRVSDTV----RML---------------------GAM------ 239
           PN   +T+LMKGY   GR+ + +    RM+                     G M      
Sbjct: 311 PNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSV 370

Query: 240 -RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
            ++ E N   P+  TY+T++    KAG +  A ++  +M   G   N + Y  ++   C+
Sbjct: 371 SQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCR 430

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
               + A  L+  MA +    P+ +++N  I G      +  A+   N+MR  G AP   
Sbjct: 431 NSMFNHALHLIENMA-NGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVT 489

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
           +Y  ++     + + + A ++  E + +  +K ++V +N ++ G+C  G+ + A +I  +
Sbjct: 490 TYNEVLDGLFNAKRTREALQIVGE-IEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGK 548

Query: 419 MKENGFYPNVATYGSL 434
           +   G  P+  TY ++
Sbjct: 549 LLVGGTKPDSITYNTV 564



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 136/372 (36%), Gaps = 86/372 (23%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N  ++  ++  Y   G     ++      R  +    P    Y  V+ AL+         
Sbjct: 107 NEDLFVIVINAYRRAGLAEQALK---TFYRIGEFGCKPSVKIYNHVLDALLSENKFQMIN 163

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS------- 324
            +   M R G+  N  TYN+LLK  C+  ++D A++LL EM+    I PD VS       
Sbjct: 164 GIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCI-PDAVSYTTVVSS 222

Query: 325 -----------------------YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
                                  YN LI+GF            FNEM   GI P  I+Y+
Sbjct: 223 MCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYS 282

Query: 362 TLMKAFALSSQPKLANKVFDEM-LR--DPRVKV--------------------------- 391
           T++   +     ++A  V  +M LR   P V                             
Sbjct: 283 TVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQE 342

Query: 392 ----DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
               + VA+N L+ G C  G + EA  + ++M+ NG +PN  TY +L +G + A     A
Sbjct: 343 GSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGA 402

Query: 448 LLLW-KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506
             +W K I   C                  P+  +   + D+  R + F  AL ++  M 
Sbjct: 403 SEIWNKMITNGC-----------------LPNVVVYTCMVDVLCRNSMFNHALHLIENMA 445

Query: 507 EHGIPPNKTKYK 518
               PPN   + 
Sbjct: 446 NGNCPPNTITFN 457



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/300 (18%), Positives = 119/300 (39%), Gaps = 65/300 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+ +G LP+V  ++ +V  L  +          +F+  +  +   ++     +  P+T  
Sbjct: 409 MITNGCLPNVVVYTCMVDVLCRN---------SMFNHALHLIENMAN----GNCPPNTIT 455

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N  +      GK +  +++ +QM ++G  P+V TYN ++     A R    + ++  I 
Sbjct: 456 FNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIE 515

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           EM I   + T+ ++++ +   G  + A  I   +  G                       
Sbjct: 516 EMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTK-------------------- 555

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                         P+S  Y T++  Y  +G V   ++++  + 
Sbjct: 556 ------------------------------PDSITYNTVIYAYCKQGEVKTAIQLVDRLT 585

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           ++ +   +PD  TYT+++  +     +D A   L +M   G+  NR T+N L++G   +L
Sbjct: 586 KKGE--GYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGLFSKL 643



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 7/203 (3%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE 311
           +TYTT++  L     +D  + +L  M   G+  N   + I++  Y +    ++A +    
Sbjct: 74  LTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYR 133

Query: 312 MADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371
           + +    +P V  YN ++D  +  +        +N M+  GI     +Y  L+KA   + 
Sbjct: 134 IGEFG-CKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKND 192

Query: 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
           +   A K+  EM     +  D V++  +V   CR+G VEEA+ +  R+K   F P    Y
Sbjct: 193 RVDAARKLLAEMSYKGCIP-DAVSYTTVVSSMCRLGKVEEARELSMRIKS--FVP---VY 246

Query: 432 GSLANGISLARKPGEALLLWKEI 454
            +L NG     K  E   L+ E+
Sbjct: 247 NALINGFCREHKMEEVFELFNEM 269


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 202/456 (44%), Gaps = 85/456 (18%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR----KHL 111
           P+   +NA+++     G   + L++ D+M   G KP+ +T+N +++   R+++    + +
Sbjct: 358 PNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQV 417

Query: 112 LVFVLERILEMGITLCMTTFQSLV--AAYVGF---------GDLEIAETIVQAMREGRRD 160
           LV++L   L + + +C      L+  + +V           G++ ++++++  +  G   
Sbjct: 418 LVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVG--- 474

Query: 161 VCKI---------------IRELDLEDYSS----ENEGDDDDDDEVFEKLLPNSINPSSE 201
           +CK                ++ L     +S        +  + +EVFE L          
Sbjct: 475 LCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVL---------- 524

Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
             +L K    +   Y TL+ G    G++ +  ++   M +QE     PD  TY  ++  L
Sbjct: 525 KQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQE---FQPDTYTYNFLMKGL 581

Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
              G +D   ++L E    G   N  TY +LL+GYC+  +I+ A +  + + D  K+E  
Sbjct: 582 ADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNL-DYEKVELS 640

Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381
            V YNILI  +  I +   A    + M++RGI PT  +Y++L+       +   A ++F+
Sbjct: 641 SVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFE 700

Query: 382 EMLRD---PRV--------------KVDIVA-----------------WNMLVEGYCRMG 407
           EM  +   P V              ++DIV                  + ++++GYC++G
Sbjct: 701 EMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLG 760

Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
            ++EA+ ++  M  NG  P+  TY +L  G    R+
Sbjct: 761 NMKEARELLNEMIRNGIAPDTVTYNALQKGYCKERE 796



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 217/509 (42%), Gaps = 43/509 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN V++     G+ ++ L+  D+M      P V+TY V+I    +         V
Sbjct: 288 PNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEV 347

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L  +  MG       F +L+  Y   GD+  A  +   M         +     L+ +  
Sbjct: 348 LVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCR 407

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT-----FAPNSRIYTTLMKGYMNEGRVS 230
            N+ +  +   V+      S+N      ++ +      F    +I T L+ G +   RVS
Sbjct: 408 SNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNI---RVS 464

Query: 231 DTVR--MLGAMRRQEDNASH--------------PDHVTYTTVVSALVKAGSMDRARQVL 274
           D++   ++  + + E ++                 + VT   ++  L + G+M+   +VL
Sbjct: 465 DSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVL 524

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            +M   G+  +RI+YN L+ G C+  +I++A +L  EM    + +PD  +YN L+ G   
Sbjct: 525 KQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQ-EFQPDTYTYNFLMKGLAD 583

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
           +          +E +  G  P   +Y  L++ +  + + + A K F   L   +V++  V
Sbjct: 584 MGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKN-LDYEKVELSSV 642

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            +N+L+  YCR+G V EA ++ + MK  G  P  ATY SL +G+    +  EA    KEI
Sbjct: 643 VYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEA----KEI 698

Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
            E  E++ EG          L P+     AL     +         I+  M  +GI PNK
Sbjct: 699 FE--EMRNEG----------LLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNK 746

Query: 515 TKYKKIYVEMHSRMFTSKHASQARQDRRR 543
             Y  I ++ + ++   K A +   +  R
Sbjct: 747 ITY-TIMIDGYCKLGNMKEARELLNEMIR 774



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 31/297 (10%)

Query: 39  VKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
           ++   K  +  +  + +PDT  YN ++   A++GK     +L  +  E+G  P+V TY +
Sbjct: 552 IEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYAL 611

Query: 99  MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-G 157
           +++   +A R    V   + +    + L    +  L+AAY   G++  A  +  AM+  G
Sbjct: 612 LLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRG 671

Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
               C     L    +     G  D+  E+FE++            LLP  F      YT
Sbjct: 672 ILPTCATYSSLI---HGMCCIGRVDEAKEIFEEM--------RNEGLLPNVFC-----YT 715

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
            L+ G+   G++     +L  M     N   P+ +TYT ++    K G+M  AR++L EM
Sbjct: 716 ALIGGHCKLGQMDIVGSILLEM---SSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEM 772

Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV-----VSYNILI 329
            R G+  + +TYN L KGYC      K +EL   +  D K    +     ++YN LI
Sbjct: 773 IRNGIAPDTVTYNALQKGYC------KERELTVTLQSDHKSNIGLPLEEEITYNTLI 823



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 102/487 (20%), Positives = 192/487 (39%), Gaps = 103/487 (21%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           + G  P +K  + ++S L  + +    +S ++FD+  + V             PD   + 
Sbjct: 214 KRGVFPCLKTCNLLLSSLVKANELH--KSYEVFDLACQGV------------APDVFTFT 259

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
             +NA    G+    + LF +M   G  P+V+TYN +I    ++ R    +   +R++  
Sbjct: 260 TAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRS 319

Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
            +   + T+  L++   G   LE+ E                  E+ +E YS        
Sbjct: 320 KVNPSVVTYGVLIS---GLMKLEMFEE---------------ANEVLVEMYS-------- 353

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
                                     FAPN  ++  L+ GY  +G + + +R+   M  +
Sbjct: 354 ------------------------MGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMK 389

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR---------------- 286
                 P+ VT+ T++    ++  M++A QVL  +   G+  N                 
Sbjct: 390 ---GMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGF 446

Query: 287 ----------ITYNI---------LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
                     ++ NI         L+ G C+     +A EL  ++A    +  + V+ N 
Sbjct: 447 VSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNA 506

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           L+ G     +         +M  +G+   +ISY TL+       + + A K+ +EM++  
Sbjct: 507 LLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQ- 565

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
             + D   +N L++G   MG +++  R++   KE GF PNV TY  L  G   A +  +A
Sbjct: 566 EFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDA 625

Query: 448 LLLWKEI 454
           +  +K +
Sbjct: 626 VKFFKNL 632



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 118/270 (43%), Gaps = 25/270 (9%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVP--ANRITYNILLKGYCQQLQIDKAKELLR 310
           +Y  ++ +L+    + RAR +LA +    VP  +++ T +     + +  +I  +   L 
Sbjct: 120 SYCLLLRSLLADSFVPRARFLLARLIDGHVPTWSSKTTTSF----HDRLREIASSMLELN 175

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
           + +D+ ++    +  +IL   F  +  S  A   F     RG+ P   +   L+ +   +
Sbjct: 176 QGSDEQRLGELDLLLHILCSQFKCLG-SRCAFDIFVMFSKRGVFPCLKTCNLLLSSLVKA 234

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
           ++   + +VFD  L    V  D+  +   +  +C+ G V +A  +  +M+  G +PNV T
Sbjct: 235 NELHKSYEVFD--LACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVT 292

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           Y ++ +G+  + +  EAL      K+R           S + P +     L+  L    +
Sbjct: 293 YNNVIDGLFKSGRFEEAL----RFKDR--------MVRSKVNPSVVTYGVLISGL----M 336

Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           +   F +A E++  M   G  PN+  +  +
Sbjct: 337 KLEMFEEANEVLVEMYSMGFAPNEVVFNAL 366


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 186/434 (42%), Gaps = 45/434 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+   ++ +VS L   G        K FD   +RV  F    ++S   PD   
Sbjct: 342 MAHEGIQPNSYTYNIIVSGLCKEG--------KAFDA--RRVENFIRSGVMS---PDVVT 388

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++L+A  + G      ++ D+M + G  P+  TYNV+++   RA R      +LER+ 
Sbjct: 389 YTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMN 448

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           E G +L       ++        L++A  IV  M E        +    L   S      
Sbjct: 449 EKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVS------ 502

Query: 181 DDDDDEVFEKLLPNSINPS--------------SEPPLLP---KTFAPNSRIYTTLMKGY 223
              D  + ++ LP+ I  S              ++  LL    K  +P+S IY T + GY
Sbjct: 503 ---DSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGY 559

Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
              G+ S  +++L   R  E    +P   TY  ++    +    +   ++++EM   G+ 
Sbjct: 560 CKHGKTSLAIKVL---RDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGIS 616

Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
            N +TYN L+K +CQQ  ++KA  LL EM  + ++ P++ S+++LI  +  I D   A  
Sbjct: 617 PNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQN-ELVPNITSFDLLIKAYCKITDFPSAQM 675

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
            F+    R     ++ Y  +        +   A  +  EM  + RV +    +  ++ G 
Sbjct: 676 VFDAA-LRTCGQKEVLYCLMCTELTTYGKWIEAKNIL-EMALEMRVSIQSFPYKQIISGL 733

Query: 404 CRMGLVEEAKRIIE 417
           C +G V+ A  +++
Sbjct: 734 CEVGEVDHAHSLLK 747



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 184/396 (46%), Gaps = 73/396 (18%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQM---HEFGAKPDVLTYNVMIKLCARA 106
           ++S ++PD    N +L A  + G+ +   ++FD M   +EF       ++ ++ +   RA
Sbjct: 137 LLSGAQPDVFTRNLLLQALCDAGRMELAQRVFDAMPARNEF-------SFGILARGYCRA 189

Query: 107 SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166
            R    + VL+ +  M + +C T    +VA +   G +E AE +V+ MR           
Sbjct: 190 GRSIDALKVLDGMPSMNLVVCNT----VVAGFCKEGLVEEAERLVERMR----------- 234

Query: 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE 226
                                 + L PN +           TF  N+RI + L K     
Sbjct: 235 ---------------------VQGLAPNVV-----------TF--NARI-SALCKA---- 255

Query: 227 GRVSDTVRMLGAMRRQED---NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
           GRV D  R+   M  QED       PD VT+  ++S    AG +D AR VL ++ R G  
Sbjct: 256 GRVLDAYRIFQDM--QEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEAR-VLVDIMRCGGF 312

Query: 284 ANRI-TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
             R+ +YN  L G  +  ++ +A+ELLREMA +  I+P+  +YNI++ G      +  A 
Sbjct: 313 LRRVESYNRWLSGLVRNGRVGEAQELLREMAHEG-IQPNSYTYNIIVSGLCKEGKAFDAR 371

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
              N +R+  ++P  ++YT+L+ A+        AN++ DEM +      +   +N+L++ 
Sbjct: 372 RVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKG-CAPNSFTYNVLLQS 430

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
             R G   EA+R++ERM E G+  + A    + +G+
Sbjct: 431 LWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGL 466



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 36/278 (12%)

Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
           +S PP       P + +Y  L+   + E R+ D V  L   +    + + PD  T   ++
Sbjct: 103 TSAPP-------PTTPVYNRLILAALRESRL-DLVEAL--YKDLLLSGAQPDVFTRNLLL 152

Query: 259 SALVKAGSMDRARQVLAEMTRIGVPA-NRITYNILLKGYCQQ-LQIDKAKELLREMADDA 316
            AL  AG M+ A++V   M     PA N  ++ IL +GYC+    ID  K L      D 
Sbjct: 153 QALCDAGRMELAQRVFDAM-----PARNEFSFGILARGYCRAGRSIDALKVL------DG 201

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
               ++V  N ++ GF        A      MR +G+AP  +++   + A   + +   A
Sbjct: 202 MPSMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDA 261

Query: 377 NKVFDEMLRD-----PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
            ++F +M  D     PR   D V +++++ G+C  G V+EA+ +++ M+  GF   V +Y
Sbjct: 262 YRIFQDMQEDWQHGLPRP--DQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESY 319

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
               +G+    + GEA  L +E+        EG+  +S
Sbjct: 320 NRWLSGLVRNGRVGEAQELLREMAH------EGIQPNS 351



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 22/228 (9%)

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
           P     YN L+    ++ ++D  + L +++      +PDV + N+L+           A 
Sbjct: 107 PPTTPVYNRLILAALRESRLDLVEALYKDLLLSGA-QPDVFTRNLLLQALCDAGRMELAQ 165

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F+ M AR     + S+  L + +  + +   A KV D M       +++V  N +V G
Sbjct: 166 RVFDAMPAR----NEFSFGILARGYCRAGRSIDALKVLDGM-----PSMNLVVCNTVVAG 216

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
           +C+ GLVEEA+R++ERM+  G  PNV T+ +  + +  A +  +A  ++++++E      
Sbjct: 217 FCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQE------ 270

Query: 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
              +    LP   +PD+   D +      A F  +A  +V  M   G 
Sbjct: 271 ---DWQHGLP---RPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGF 312


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 158/342 (46%), Gaps = 30/342 (8%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ + + P+   +TTL+KG   E R+ +  ++   MR Q+   + P+ VTY T++  L  
Sbjct: 152 IMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLF--MRMQKLGCT-PNVVTYGTLIKGLCA 208

Query: 264 AGSMDRARQVLAEMTRIGVP------ANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
            G+++ A +   EM     P       N I+Y+I++ G C+    ++A  L  EM D   
Sbjct: 209 LGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQG- 267

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
           ++P+VV++++LID          A      M   GI P   +YT+L+K F L      A 
Sbjct: 268 VQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAK 327

Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
           ++F  M      + D++++NML+ GYC+   VEEA ++   M   G +P+V T G L   
Sbjct: 328 ELFVSM-PSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKA 386

Query: 438 ISLARKPGEALLLWKEIKER--------CEVKKEGVNADSDLPPP-----------LKPD 478
           + LA K  +A  L++ IK          C +  +G+  +  +              +K D
Sbjct: 387 LFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLD 446

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            E    L D   +A     A E+   + E GI P+   Y  +
Sbjct: 447 IETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSM 488



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 98/493 (19%), Positives = 208/493 (42%), Gaps = 91/493 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLF---------------DVVVKRVRKF 45
           ++R GY+P V  ++T++  L    +   +E+ KLF                 ++K +   
Sbjct: 152 IMRRGYIPDVVTFTTLIKGLCV--EHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCAL 209

Query: 46  SDPDI---------------VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90
            + +I               V + +P+  +Y+ +++    +G  ++ + LF++M + G +
Sbjct: 210 GNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQ 269

Query: 91  PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           P+V+T++V+I +  +  +      +LE ++++GI   + T+ SL+  +   GDL  A+ +
Sbjct: 270 PNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKEL 329

Query: 151 VQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
             +M                                           PS       K + 
Sbjct: 330 FVSM-------------------------------------------PS-------KGYE 339

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y  L+ GY    +V + +++   M         PD  T   ++ AL  AG +D A
Sbjct: 340 PDVISYNMLINGYCKTLKVEEAMKLFNEMLHV---GMWPDVKTSGVLLKALFLAGKVDDA 396

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           +++   +    +P +     I L G C+   I +A +L  E+ +   ++ D+ ++  LID
Sbjct: 397 KELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNEL-ESYNMKLDIETFGCLID 455

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G         A   F ++   GI P  ++Y++++  F    Q   AN +F +M  +    
Sbjct: 456 GLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKM-EENGCS 514

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            D++ +++L+ G+     +E+  +++ RM E   +P+   Y  + + +    K  E    
Sbjct: 515 PDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKE---- 570

Query: 451 WKEIKERCEVKKE 463
           W ++ +R  V+K 
Sbjct: 571 WLDLLQRFFVQKH 583



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 189/441 (42%), Gaps = 57/441 (12%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N ++N   N+ +  + L     +   G  PDV+T+  +IK      R      +
Sbjct: 124 PDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKL 183

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
             R+ ++G T  + T+ +L+      G++ IA    Q M           R  ++  YS 
Sbjct: 184 FMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRP-NVISYSI 242

Query: 176 ENEG-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
             +G     + ++   +F +++   + P             N   ++ L+     EG+V 
Sbjct: 243 IIDGLCKVGNWEEAICLFNEMVDQGVQP-------------NVVTFSVLIDMLCKEGQVI 289

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              ++L  M +       P+  TYT+++      G ++ A+++   M   G   + I+YN
Sbjct: 290 KAKKLLEMMIQI---GIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYN 346

Query: 291 ILLKGYCQQLQIDKAKELLREM------------------------ADDAK-----IEP- 320
           +L+ GYC+ L++++A +L  EM                         DDAK     I+P 
Sbjct: 347 MLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPY 406

Query: 321 ----DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
               D+    I +DG         A+  FNE+ +  +     ++  L+     + + + A
Sbjct: 407 AMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETA 466

Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
            ++F E L +  ++ D +A++ ++ G+C+ G V++A  + ++M+ENG  P++ TY  L  
Sbjct: 467 WELF-EKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMR 525

Query: 437 GISLARKPGEALLLWKEIKER 457
           G   + K  + + L   + E+
Sbjct: 526 GFYESNKLEKVVQLLHRMIEK 546



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 29/261 (11%)

Query: 266 SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325
           S+ +A Q    M R     +  ++N LL G  +     +   L ++M   A + PD+++ 
Sbjct: 76  SVTQAHQFFDLMMR-----SIFSFNRLLAGLAKIEHYSQVFSLYKQM-HLAGLWPDLLTL 129

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
           NILI+    ++     L     +  RG  P  +++TTL+K   +  +   A K+F  M +
Sbjct: 130 NILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRM-Q 188

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN------GFYPNVATYGSLANGIS 439
                 ++V +  L++G C +G +  A +  + M  +         PNV +Y  + +G+ 
Sbjct: 189 KLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLC 248

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
                 EA+ L+ E+ +      +GV          +P+      L D+  +     KA 
Sbjct: 249 KVGNWEEAICLFNEMVD------QGV----------QPNVVTFSVLIDMLCKEGQVIKAK 292

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
           +++  M + GI PN   Y  +
Sbjct: 293 KLLEMMIQIGIVPNLFTYTSL 313


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 177/386 (45%), Gaps = 21/386 (5%)

Query: 43  RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK- 101
           RK  D    +   PD  ++ A++  C   GK ++   L   M  +G   D  T  V+++ 
Sbjct: 158 RKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRS 217

Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
           LC +   K +  F   R+LEMG    +  + + +        ++ A  +++ M  GR   
Sbjct: 218 LCEKGRFKDVSEF-FRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEM-VGRGLK 275

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
             +     L D   +  G  +    +F KL+ +S            ++ PN   YT ++ 
Sbjct: 276 PNVYTHTTLIDGLCKI-GWTERAFRLFLKLIKSS------------SYKPNVHTYTVMIG 322

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           GY  EG+++    +L  M  Q      P+  TYTT++    K GS DRA +++ +M + G
Sbjct: 323 GYCREGKLARAEMLLVRMVEQ---GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 379

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              N  TYN ++ G+C++ +I +A ++LR MA    ++ D ++Y ILI           A
Sbjct: 380 FLPNIYTYNAVIDGFCKKGKIQEAYKVLR-MATSQGLKFDKITYTILITEHCKQGHITYA 438

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L  F+ M   G  P   +YT+L+  +    Q + + K FD+ L    +      +  ++ 
Sbjct: 439 LDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK-QTYTSMIA 497

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPN 427
           GYC++G    A R+ ERM +NG + +
Sbjct: 498 GYCKVGRSTMALRVFERMVQNGCFAD 523



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 171/397 (43%), Gaps = 33/397 (8%)

Query: 79  QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
           ++FD M   G  PD  ++  ++ +C R  +   +  +L  +   G +L            
Sbjct: 159 KVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSL------------ 206

Query: 139 VGFGDLEIAETIVQAMRE-GR-RDVCKIIRELDLEDYSSENEGDDDD--DDEVFEKLLPN 194
               D      +V+++ E GR +DV +  R + LE  +  N  +     D     + +  
Sbjct: 207 ----DNATCTVVVRSLCEKGRFKDVSEFFRRM-LEMGTPPNVVNYTAWIDGLCKRRYVKQ 261

Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
           + +   E  ++ +   PN   +TTL+ G    G      R+   ++  + ++  P+  TY
Sbjct: 262 AFHVLEE--MVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLF--LKLIKSSSYKPNVHTY 317

Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
           T ++    + G + RA  +L  M   G+  N  TY  L+ G+C+    D+A EL+ +M  
Sbjct: 318 TVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQ 377

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
           +  + P++ +YN +IDGF        A        ++G+   KI+YT L+          
Sbjct: 378 EGFL-PNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHIT 436

Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            A  +FD M+ +     DI A+  L+  YC+   +EE+++  ++    G  P   TY S+
Sbjct: 437 YALDLFDRMVENGCCP-DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSM 495

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
             G     +   AL +++ + +       G  ADS L
Sbjct: 496 IAGYCKVGRSTMALRVFERMVQ------NGCFADSIL 526



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 136/348 (39%), Gaps = 55/348 (15%)

Query: 40  KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
           K V +F    +   + P+   Y A ++        K+   + ++M   G KP+V T+  +
Sbjct: 225 KDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTL 284

Query: 100 I-KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR 158
           I  LC     +      L+ I        + T+  ++  Y   G L  AE ++  M E  
Sbjct: 285 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVE-- 342

Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
                                                           +   PN+  YTT
Sbjct: 343 ------------------------------------------------QGLKPNTNTYTT 354

Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
           L+ G+   G       ++  M+++      P+  TY  V+    K G +  A +VL   T
Sbjct: 355 LIGGHCKGGSFDRAFELMNKMKQE---GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMAT 411

Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
             G+  ++ITY IL+  +C+Q  I  A +L   M ++    PD+ +Y  LI  +      
Sbjct: 412 SQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCC-PDIEAYTSLISTYCQQRQM 470

Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
             +  FF++    G+ PTK +YT+++  +    +  +A +VF+ M+++
Sbjct: 471 EESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQN 518



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 144/366 (39%), Gaps = 55/366 (15%)

Query: 119 ILEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           +LEM   G+ LC+ T   ++   +  G    A  +   M   R  VC   R         
Sbjct: 126 VLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMT--RAGVCPDERSFRALVVVC 183

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG  ++ D +   +                 F+ ++   T +++    +GR  D    
Sbjct: 184 CREGKVEEVDALLAAMWRYG-------------FSLDNATCTVVVRSLCEKGRFKDVSEF 230

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
               RR  +  + P+ V YT  +  L K   + +A  VL EM   G+  N  T+  L+ G
Sbjct: 231 F---RRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDG 287

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+    ++A  L  ++   +  +P+V +Y ++I G+      A A      M  +G+ P
Sbjct: 288 LCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKP 347

Query: 356 TKISYTTLM----------KAFALSSQPK---------LANKVFDEMLRDPRV------- 389
              +YTTL+          +AF L ++ K           N V D   +  ++       
Sbjct: 348 NTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVL 407

Query: 390 --------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
                   K D + + +L+  +C+ G +  A  + +RM ENG  P++  Y SL +     
Sbjct: 408 RMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQ 467

Query: 442 RKPGEA 447
           R+  E+
Sbjct: 468 RQMEES 473



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 74/323 (22%)

Query: 254 YTTVVSALVKAGSMDRARQVL--------------------AEMTRIGVPANRITYNILL 293
           Y T  +A V  GS+  A +V+                     EM   G+P    T N +L
Sbjct: 86  YVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVL 145

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI---------------------DGF 332
           +   +      A+++   M   A + PD  S+  L+                      GF
Sbjct: 146 RVGLETGSFVYARKVFDGMT-RAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGF 204

Query: 333 ILIDDSAGALT--------------FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
            L + +   +               FF  M   G  P  ++YT  +         K A  
Sbjct: 205 SLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFH 264

Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM-KENGFYPNVATYGSLANG 437
           V +EM+    +K ++     L++G C++G  E A R+  ++ K + + PNV TY  +  G
Sbjct: 265 VLEEMV-GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGG 323

Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
                K   A +L   + E+                 LKP+      L     +   F +
Sbjct: 324 YCREGKLARAEMLLVRMVEQ----------------GLKPNTNTYTTLIGGHCKGGSFDR 367

Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
           A E++  M++ G  PN   Y  +
Sbjct: 368 AFELMNKMKQEGFLPNIYTYNAV 390



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 56/288 (19%), Positives = 113/288 (39%), Gaps = 32/288 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+V   +T++  L   G      + + F + +K ++        S  KP+   
Sbjct: 269 MVGRGLKPNVYTHTTLIDGLCKIG-----WTERAFRLFLKLIKS-------SSYKPNVHT 316

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++      GK  +   L  +M E G KP+  TY  +I    +         ++ ++ 
Sbjct: 317 YTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMK 376

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + T+ +++  +   G ++ A  +++          KI   + + ++    +G 
Sbjct: 377 QEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC--KQGH 434

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG-RVSDTVRMLGAM 239
                ++F++++ N   P  E        A  S I T   +  M E  +  D   M+G +
Sbjct: 435 ITYALDLFDRMVENGCCPDIE--------AYTSLISTYCQQRQMEESQKFFDKCLMIGLL 486

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
                    P   TYT++++   K G    A +V   M + G  A+ I
Sbjct: 487 ---------PTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSI 525


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 197/442 (44%), Gaps = 47/442 (10%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G++P ++ + ++V+     G         +F+ +   + +  D  +      +   YN +
Sbjct: 273 GFIPTLQTFGSLVNGFCKMG---------MFEAIDLLLLEMKDRGL----SVNVQMYNNI 319

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMG 123
           ++A   LG   K      +M E   +PD++TYN +I   C+R   +     +LE+ +  G
Sbjct: 320 IDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEK-LLEQTIRRG 378

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYSSENEG--- 179
           +     T+  LV  Y   G+   A + +++    G         E+D+  Y +   G   
Sbjct: 379 LAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGL--------EVDMISYGALIHGLVV 430

Query: 180 --DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
             + D    + ++++   I              P++ IY  LM G   +G++S    ML 
Sbjct: 431 AGEVDTALTIRDRMMNRGI-------------LPDANIYNVLMNGLFKKGKLSMAKVMLT 477

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
            M    D    PD   Y T+V   ++ G++D A+++   +   G+    + YN+++KG+ 
Sbjct: 478 EML---DQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFS 534

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +   +D A   + +M     + PD+ +++ +IDG++   +    L  F  M  +   P  
Sbjct: 535 KSGMMDNAILCIDKMRRAHHV-PDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNV 593

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++YT+L+  +    + K+A K+F  M+R   +K  +V +++L+  +C+   + +A    E
Sbjct: 594 VTYTSLINGYCRKGETKMAEKLF-SMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFE 652

Query: 418 RMKENGFYPNVATYGSLANGIS 439
            M  N   PN A +  L NG +
Sbjct: 653 LMLINKCTPNDAAFHYLVNGFT 674



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 125/526 (23%), Positives = 223/526 (42%), Gaps = 68/526 (12%)

Query: 7   LPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVL 65
           +P  +A S V   L A  D G V+ +++++  VVK          + +S P T A N++L
Sbjct: 130 IPTREALSDV---LCAYADVGLVDKALEVYHGVVK----------LHNSLPSTYACNSLL 176

Query: 66  NACANLGKPKKFLQLFDQMHEFGAKPDVL----TYNVMIKLCARASRKHLLVFVLERILE 121
           N      + +   QL+D+M +     D+     T ++M+K      R    + ++E    
Sbjct: 177 NLLVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWG 236

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSENEGD 180
            G    +  + +L+  Y   G++E A  + + ++ +G            L+ + S   G 
Sbjct: 237 KGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPT--------LQTFGSLVNG- 287

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLP---KTFAPNSRIYTTLMKGYMNEG---RVSDTVR 234
                  F K+    +  + +  LL    +  + N ++Y  ++      G   +  DT  
Sbjct: 288 -------FCKM---GMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDT-- 335

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               ++   +N   PD VTY T+++     G ++ A ++L +  R G+  N++TY  L+ 
Sbjct: 336 ----LKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVH 391

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYC+Q +  KA + L EM+    +E D++SY  LI G ++  +   ALT  + M  RGI 
Sbjct: 392 GYCKQGEYTKATDYLIEMSTSG-LEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGIL 450

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P    Y  LM       +  +A  +  EML D  +  D   +  LV+G+ R G ++EAK+
Sbjct: 451 PDANIYNVLMNGLFKKGKLSMAKVMLTEML-DQNIAPDAFVYATLVDGFIRHGNLDEAKK 509

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
           + + + E G  P V  Y  +  G S +     A+L   +++    V              
Sbjct: 510 LFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHV-------------- 555

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             PD      + D  V+       L+I   M +    PN   Y  +
Sbjct: 556 --PDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSL 599



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 179/429 (41%), Gaps = 57/429 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   YN +++     G+ +   +LF ++   G  P + T+  ++    +      +  +
Sbjct: 241 PNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLL 300

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFG-DLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           L  + + G+++ +  + +++ A    G D++  +T    ++E   + C    E DL  Y+
Sbjct: 301 LLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDT----LKEMSENCC----EPDLVTYN 352

Query: 175 SE-NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
           +  N      + E  EKLL  +I          +  APN   YT L+ GY  +G  +   
Sbjct: 353 TLINHFCSRGEVEEAEKLLEQTIR---------RGLAPNKLTYTPLVHGYCKQGEYTKAT 403

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
             L  M     +    D ++Y  ++  LV AG +D A  +   M   G+  +   YN+L+
Sbjct: 404 DYLIEM---STSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLM 460

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G  ++ ++  AK +L EM D   I PD   Y  L+DGFI   +   A   F  +  +G+
Sbjct: 461 NGLFKKGKLSMAKVMLTEMLDQ-NIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGL 519

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV------------------------ 389
            P  + Y  ++K F+ S     A    D+M R   V                        
Sbjct: 520 DPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLK 579

Query: 390 ----------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
                     K ++V +  L+ GYCR G  + A+++   M+ +G  P+V TY  L     
Sbjct: 580 IFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFC 639

Query: 440 LARKPGEAL 448
              K G+A+
Sbjct: 640 KEAKLGKAV 648



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 162/386 (41%), Gaps = 25/386 (6%)

Query: 72  GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
           G+ +  ++L +     G  P+++ YN +I    +         + +++   G    + TF
Sbjct: 222 GRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTF 281

Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDV------------CKIIRELDLEDYSSENEG 179
            SLV  +   G  E  + ++  M++    V             K+  ++  +D   E   
Sbjct: 282 GSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSE 341

Query: 180 DDDDDDEVFEKLLPNSINPSSE----PPLLPKT----FAPNSRIYTTLMKGYMNEGRVSD 231
           +  + D V    L N      E      LL +T     APN   YT L+ GY  +G  + 
Sbjct: 342 NCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTK 401

Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
               L  M     +    D ++Y  ++  LV AG +D A  +   M   G+  +   YN+
Sbjct: 402 ATDYLIEM---STSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNV 458

Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
           L+ G  ++ ++  AK +L EM D   I PD   Y  L+DGFI   +   A   F  +  +
Sbjct: 459 LMNGLFKKGKLSMAKVMLTEMLDQ-NIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEK 517

Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
           G+ P  + Y  ++K F+ S     A    D+M R   V  DI  ++ +++GY +   +  
Sbjct: 518 GLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVP-DIFTFSTIIDGYVKQHNMNA 576

Query: 412 AKRIIERMKENGFYPNVATYGSLANG 437
             +I   M +    PNV TY SL NG
Sbjct: 577 VLKIFGLMVKQNCKPNVVTYTSLING 602



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/399 (20%), Positives = 159/399 (39%), Gaps = 71/399 (17%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
           D  +Y A+++     G+    L + D+M   G  PD   YNV++    +  +  +   +L
Sbjct: 417 DMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVML 476

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
             +L+  I      + +LV  ++  G+L+ A+ + Q + E                    
Sbjct: 477 TEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIE-------------------- 516

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                                         K   P    Y  ++KG+   G + + +  +
Sbjct: 517 ------------------------------KGLDPGVVGYNVMIKGFSKSGMMDNAILCI 546

Query: 237 GAMRRQEDNASH-PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
             MRR    A H PD  T++T++   VK  +M+   ++   M +     N +TY  L+ G
Sbjct: 547 DKMRR----AHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLING 602

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC++ +   A++L   M     ++P VV+Y+ILI  F        A+++F  M      P
Sbjct: 603 YCRKGETKMAEKLFSMMRSHG-LKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTP 661

Query: 356 TKISYTTLMKAF------ALSSQPK--------LANKVFDEMLRDPRVKVDIVAWNMLVE 401
              ++  L+  F      A+S +P         +    F  M+ D   +    A+N ++ 
Sbjct: 662 NDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQ-KAAAYNCILI 720

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
             C+  +V+ A ++  +M   G   +  ++ +L +GI L
Sbjct: 721 CLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICL 759



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 27/249 (10%)

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM--RARGIAPTKIS 359
           +DKA E+   +       P   + N L++  +       A   ++EM  R  G      +
Sbjct: 149 VDKALEVYHGVVKLHNSLPSTYACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDN 208

Query: 360 YTT--LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           YTT  ++K   L  + +   K+ +       V  +IV +N L++GYC+ G VE A ++ +
Sbjct: 209 YTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVP-NIVFYNTLIDGYCKKGEVESAYKLFK 267

Query: 418 RMKENGFYPNVATYGSLANGISLARKPG--EAL-LLWKEIKERCEVKKEGVNADSDLPPP 474
           ++K  GF P + T+GSL NG     K G  EA+ LL  E+K+R                 
Sbjct: 268 KLKMKGFIPTLQTFGSLVNGFC---KMGMFEAIDLLLLEMKDR----------------G 308

Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
           L  + ++ + + D   +  F  KA + +  M E+   P+   Y  +     SR    +  
Sbjct: 309 LSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAE 368

Query: 535 SQARQDRRR 543
               Q  RR
Sbjct: 369 KLLEQTIRR 377



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 14/107 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R+ ++P +  +ST++       +   V  +K+F ++VK+           + KP+   
Sbjct: 549 MRRAHHVPDIFTFSTIIDGYVKQHNMNAV--LKIFGLMVKQ-----------NCKPNVVT 595

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARA 106
           Y +++N     G+ K   +LF  M   G KP V+TY+++I   C  A
Sbjct: 596 YTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEA 642


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 189/437 (43%), Gaps = 48/437 (10%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           P+  +++TV+  L AS   G  E+V L        R        S  + D   Y  ++  
Sbjct: 121 PNAVSYTTVMRGLCASRRTG--EAVALL-------RSMQ----ASGVRADVVTYGTLIRG 167

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
             +  +    L+L D+M   G +P+V+ Y+ +++   R+ R   +  V E +   GI   
Sbjct: 168 LCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPD 227

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
           +  F  L+       DL          +EG+      ++++ ++     N         V
Sbjct: 228 VIMFTGLI------DDL---------CKEGKTGKAAKVKDMMVQRGLEPNV--------V 264

Query: 188 FEKLLPNSINPSSE--------PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
              +L NS+               +  K  AP+   Y TL+ G      + + +  L  M
Sbjct: 265 TYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEM 324

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             Q D    PD VT+ +V+  L K G M +A +V   M   G   N +TYN L+ G+ + 
Sbjct: 325 I-QGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRV 383

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
            ++  A  L+ E+A    +EPD  +Y+ILI+GF  + +   A  F   MR RGI      
Sbjct: 384 HKVKMAMNLMDELAISG-LEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFH 442

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+ A       + A  +F+EM  D    +D +A++ ++ G C+ G ++  K++I+ M
Sbjct: 443 YIPLLAAMCQQGMMERAMGLFNEM--DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDM 500

Query: 420 KENGFYPNVATYGSLAN 436
            + G  P+  TY  L N
Sbjct: 501 LDEGLAPDAVTYSMLIN 517



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 38/279 (13%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN+  YTT+M+G     R  + V +L   R  + +    D VTY T++  L  A  +D A
Sbjct: 121 PNAVSYTTVMRGLCASRRTGEAVALL---RSMQASGVRADVVTYGTLIRGLCDASELDAA 177

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA---------------DD 315
            ++L EM   GV  N + Y+ LL+GYC+  +     ++  +M+               DD
Sbjct: 178 LELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDD 237

Query: 316 ----------AKI---------EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
                     AK+         EP+VV+YN+LI+          ALT   EM  +G+AP 
Sbjct: 238 LCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPD 297

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLR-DPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
            ++Y TL+   +   +   A    +EM++ D  V+ D+V +N ++ G C++G + +A ++
Sbjct: 298 VVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKV 357

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            E M E G   N+ TY  L  G     K   A+ L  E+
Sbjct: 358 REMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDEL 396



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 141/306 (46%), Gaps = 22/306 (7%)

Query: 216 YTTLMKGYMNEGRVSDTVR----MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           Y T++      G   D +R    +L  M R+   A+ P+ V+YTTV+  L  +     A 
Sbjct: 86  YNTVLAALCRRG--GDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAV 143

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +L  M   GV A+ +TY  L++G C   ++D A ELL EM     ++P+VV Y+ L+ G
Sbjct: 144 ALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSG-VQPNVVVYSCLLRG 202

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
           +            F +M  RGI P  I +T L+       +   A KV D M++   ++ 
Sbjct: 203 YCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRG-LEP 261

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           ++V +N+L+   C+ G V EA  + + M + G  P+V TY +L  G+S   +  EA+   
Sbjct: 262 NVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFL 321

Query: 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
           +E+          +  D+ + P +     ++  L  I        +A+++   M E G  
Sbjct: 322 EEM----------IQGDTVVEPDVVTFNSVIHGLCKI----GRMTQAVKVREMMAERGCM 367

Query: 512 PNKTKY 517
            N   Y
Sbjct: 368 CNLVTY 373



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 107/458 (23%), Positives = 191/458 (41%), Gaps = 69/458 (15%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG  P+V  +S ++     SG    V   K+F+ + +R             KPD   
Sbjct: 184 MCGSGVQPNVVVYSCLLRGYCRSGRWQDVG--KVFEDMSRR-----------GIKPDVIM 230

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           +  +++     GK  K  ++ D M + G +P+V+TYNV+I  LC   S +  L    E +
Sbjct: 231 FTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKE-M 289

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
            + G+   + T+ +L+A   G  +++ A + ++ M +G       + E D+  ++S   G
Sbjct: 290 DDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQG-----DTVVEPDVVTFNSVIHG 344

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                     K+   +        +  +    N   Y  L+ G++   RV      +  M
Sbjct: 345 --------LCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFL---RVHKVKMAMNLM 393

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
                +   PD  TY+ +++   K   +DRA + L  M + G+ A    Y  LL   CQQ
Sbjct: 394 DELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQ 453

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +++A  L  EM  D     D ++Y+ +I G     D         +M   G+AP  ++
Sbjct: 454 GMMERAMGLFNEM--DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVT 511

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y+                                    ML+  Y ++G +EEA+R++++M
Sbjct: 512 YS------------------------------------MLINMYAKLGDLEEAERVLKQM 535

Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
             +GF P+VA + SL  G S   +  + L L  E++ +
Sbjct: 536 TASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAK 573



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 163/395 (41%), Gaps = 66/395 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G  P V  ++ ++  L   G  G    VK  D++V+R             +P+   
Sbjct: 219 MSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVK--DMMVQR-----------GLEPNVVT 265

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N+    G  ++ L L  +M + G  PDV+TYN +I   +        +  LE ++
Sbjct: 266 YNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMI 325

Query: 121 EMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177
           + G T+    + TF S++      G +  A  + + M E R  +C ++       Y+   
Sbjct: 326 Q-GDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAE-RGCMCNLV------TYNYLI 377

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
            G        F ++    +  +    L      P+S  Y+ L+ G+     V    + L 
Sbjct: 378 GG--------FLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLC 429

Query: 238 AMRR-------------------------------QEDNASHPDHVTYTTVVSALVKAGS 266
            MR+                               + D     D + Y+T++    K+G 
Sbjct: 430 TMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGD 489

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           M   +Q++ +M   G+  + +TY++L+  Y +   +++A+ +L++M     + PDV  ++
Sbjct: 490 MKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFV-PDVAVFD 548

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIA--PTKIS 359
            LI G+     +   L   +EMRA+ +A  P  IS
Sbjct: 549 SLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIIS 583


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 158/382 (41%), Gaps = 55/382 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    YNA+++     G+ +     F +M   G  PDV+TYN ++    +A  +   + +
Sbjct: 335 PTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLL 394

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
              +   G+   + T+  L+  Y   GDLE A  + + M E                   
Sbjct: 395 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVE------------------- 435

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                                          +   P+   YT LMKG  N   ++ T   
Sbjct: 436 -------------------------------QGCLPDVYTYTILMKGSHNVCSLAMTREF 464

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +      PD   Y T + A +  G + ++ Q+   +   G+ ++ +TYNIL+ G
Sbjct: 465 FDEMLSK---GLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDG 521

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+   +  A+EL+ +M  +  ++PD ++Y  LI           A  FFN+M + G+ P
Sbjct: 522 LCKTGNLKDAEELMMQMISNG-LQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPP 580

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
           + ++YT ++ A+        A   F +ML +  V+ + + +N+L+   CRMG  + A R 
Sbjct: 581 SAVTYTVIIHAYCRRGNLYSAYGWFRKMLEE-GVEPNEITYNVLIHALCRMGRTQLAYRH 639

Query: 416 IERMKENGFYPNVATYGSLANG 437
              M E G  PN  TY  L +G
Sbjct: 640 FYEMLERGLVPNKYTYTLLIDG 661



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+   Y TL+  +  EGR  D + ML        ++  P+ VTY  V++ L + G ++ A
Sbjct: 229 PSIVTYNTLLDSFSKEGR-KDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEA 287

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +++ EM R+   A+  TYN L+ G   +  + K  +L  EM ++  I P VV+YN +I 
Sbjct: 288 AELVEEM-RLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEG-IMPTVVTYNAMIH 345

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G +       A   F EMRA G+ P  I+Y +L+  +  +   K A  +F + LR   + 
Sbjct: 346 GLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGD-LRRAGLA 404

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
             ++ +N+L++GYCR+G +EEA+R+ E M E G  P+V TY  L  G
Sbjct: 405 PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKG 451



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 179/403 (44%), Gaps = 61/403 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD    N VL    +  +      +  +M + G +P ++TYN ++   ++  RK  +  +
Sbjct: 194 PDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDML 253

Query: 116 LERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGR-------------- 158
           L+ +   G + C+    T+  ++A     G LE A  +V+ MR  +              
Sbjct: 254 LKEMEARGSS-CLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKASSFTYNPLITGL 312

Query: 159 --RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
             R   K + +L LE    ENEG                        ++P     N+ I+
Sbjct: 313 LARGFVKKVDDLQLE---MENEG------------------------IMPTVVTYNAMIH 345

Query: 217 TTLMKGYMNEGRVSDT-VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
             L  G +   +     +R +G +         PD +TY ++++   KAG+   A  +  
Sbjct: 346 GLLQSGQIEAAQAKFVEMRAMGLL---------PDVITYNSLLNGYCKAGNQKEALLLFG 396

Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
           ++ R G+    +TYNIL+ GYC+   +++A+ L  EM +   + PDV +Y IL+ G   +
Sbjct: 397 DLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCL-PDVYTYTILMKGSHNV 455

Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKA-FALSSQPKLANKVFDEMLRDPRVKVDIV 394
              A    FF+EM ++G+ P   +Y T + A   L    K  +    E++    +  D V
Sbjct: 456 CSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISK--SFQLREVIMLEGISSDTV 513

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
            +N+L++G C+ G +++A+ ++ +M  NG  P+  TY  L + 
Sbjct: 514 TYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHA 556



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 36/257 (14%)

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L A R    +   PD      V+  L  A   D    V AEM ++G+  + +TYN LL  
Sbjct: 181 LSAFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDS 240

Query: 296 YCQQLQIDKAKELLREM-ADDAKIEPDVVSYNILIDGF---------------ILIDDSA 339
           + ++ + DK   LL+EM A  +   P+ V+YN++I G                + +   A
Sbjct: 241 FSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKA 300

Query: 340 GALTFFN-------------------EMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
            + T+                     EM   GI PT ++Y  ++     S Q + A   F
Sbjct: 301 SSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKF 360

Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
            EM R   +  D++ +N L+ GYC+ G  +EA  +   ++  G  P V TY  L +G   
Sbjct: 361 VEM-RAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCR 419

Query: 441 ARKPGEALLLWKEIKER 457
                EA  L +E+ E+
Sbjct: 420 LGDLEEARRLKEEMVEQ 436



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/331 (19%), Positives = 121/331 (36%), Gaps = 71/331 (21%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           R+G  P V  ++ ++      GD             ++  R+  +  +     PD   Y 
Sbjct: 400 RAGLAPTVLTYNILIDGYCRLGD-------------LEEARRLKEEMVEQGCLPDVYTYT 446

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL-VFVLERILE 121
            ++    N+       + FD+M   G +PD   YN   ++CA  +   +   F L  ++ 
Sbjct: 447 ILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNT--RICAEITLGDISKSFQLREVIM 504

Query: 122 M-GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + GI+    T+  L+      G+L+                                   
Sbjct: 505 LEGISSDTVTYNILIDGLCKTGNLK----------------------------------- 529

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
             D +E+  +++ N +              P+   YT L+  +   G + +  +    M 
Sbjct: 530 --DAEELMMQMISNGLQ-------------PDCITYTCLIHAHCERGFLREARKFFNDMI 574

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
               +   P  VTYT ++ A  + G++  A     +M   GV  N ITYN+L+   C+  
Sbjct: 575 ---SDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMG 631

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDG 331
           +   A     EM +   + P+  +Y +LIDG
Sbjct: 632 RTQLAYRHFYEMLERGLV-PNKYTYTLLIDG 661


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 148/316 (46%), Gaps = 32/316 (10%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           PN   Y T++      G   D  + L      +     PD +T+ ++++   + G  + +
Sbjct: 268 PNLITYNTIIDACGKGG--VDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDS 325

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           ++V AEM R G+  +  T+N L+   C+  Q++ A  ++  M     I P+VV+Y+ +ID
Sbjct: 326 QRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGK-NISPNVVTYSTMID 384

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-- 388
           G+  +     A++ +++M+  G+ P ++SY TL+  +A     KL    FD+ L   +  
Sbjct: 385 GYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYA-----KLGR--FDDALIACKDM 437

Query: 389 ----VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               +K D+V +N L++ Y + G  ++A  + ++MK  G  PNV TY +L +  S A   
Sbjct: 438 ERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMH 497

Query: 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504
            +   ++ E K                   LKPD  L  +L D C +      A+ ++  
Sbjct: 498 QDVSNVFTEFKR----------------AGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQE 541

Query: 505 MEEHGIPPNKTKYKKI 520
           M + GI PN   Y  +
Sbjct: 542 MTQAGIQPNIVTYNSL 557



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 169/378 (44%), Gaps = 60/378 (15%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS---RKHLLVFVL 116
           AY+A+++A    G+ ++ L++F  M + G KP+++TYN +I  C +     ++ L +F  
Sbjct: 237 AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIF-- 294

Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
           + + + G+     TF SL+A     G  E ++ +   M+  RR +     E D+  +++ 
Sbjct: 295 DEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQ--RRGI-----EQDIFTFNTL 347

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
                    +   K     +  S    +  K  +PN   Y+T++ GY   G   + + + 
Sbjct: 348 --------IDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLY 399

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
             M+   ++   PD V+Y T++    K G  D A     +M R+G+ A+ +TYN L+  Y
Sbjct: 400 HDMK---ESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAY 456

Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
            +Q +   A  L  +M  +  + P+V++Y+ LID +            F E +  G+ P 
Sbjct: 457 GKQGKYKDAACLFDKMKGEGLV-PNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKP- 514

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
                                              D+V ++ L++  C+ GLVE+A  ++
Sbjct: 515 -----------------------------------DVVLYSSLIDSCCKCGLVEDAVVLL 539

Query: 417 ERMKENGFYPNVATYGSL 434
           + M + G  PN+ TY SL
Sbjct: 540 QEMTQAGIQPNIVTYNSL 557



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 27/299 (9%)

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
           GR+      L    R +      +   Y+ +VSA  ++G    A +V   M + G   N 
Sbjct: 211 GRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNL 270

Query: 287 ITYNILLKGYCQQLQID--KAKELLREMADDAKIEPDVVSYNILI---DGFILIDDSAGA 341
           ITYN ++   C +  +D  +A ++  EM  +  +EPD +++N LI       L +DS   
Sbjct: 271 ITYNTIIDA-CGKGGVDLKQALDIFDEMQKEG-VEPDRITFNSLIAVCSRGGLWEDSQ-- 326

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
              F EM+ RGI     ++ TL+ A     Q +LA  +   M R   +  ++V ++ +++
Sbjct: 327 -RVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTM-RGKNISPNVVTYSTMID 384

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461
           GY ++G  EEA  +   MKE+G  P+  +Y +L +  +   +  +AL+  K++ ER    
Sbjct: 385 GYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDM-ERV--- 440

Query: 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
                        LK D    +AL D   +   ++ A  +   M+  G+ PN   Y  +
Sbjct: 441 ------------GLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSAL 487



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 109/517 (21%), Positives = 206/517 (39%), Gaps = 124/517 (23%)

Query: 3   RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           ++G+  +V A+S +VS    SG     E++K+F  + K           +  KP+   YN
Sbjct: 228 KAGFGNNVYAYSAMVSAYGRSGR--CREALKVFQAMKK-----------AGCKPNLITYN 274

Query: 63  AVLNACANLG-KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS-------------- 107
            +++AC   G   K+ L +FD+M + G +PD +T+N +I +C+R                
Sbjct: 275 TIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQR 334

Query: 108 ---------------------RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146
                                +  L   ++  +    I+  + T+ +++  Y   G  E 
Sbjct: 335 RGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEE 394

Query: 147 AETIVQAMRE--------------------GRRD----VCKIIRELDLE-DYSSEN---- 177
           A ++   M+E                    GR D     CK +  + L+ D  + N    
Sbjct: 395 AISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALID 454

Query: 178 ----EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
               +G   D   +F+K+    +              PN   Y+ L+  Y   G   D  
Sbjct: 455 AYGKQGKYKDAACLFDKMKGEGL-------------VPNVLTYSALIDSYSKAGMHQDVS 501

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +    +R       PD V Y++++ +  K G ++ A  +L EMT+ G+  N +TYN L+
Sbjct: 502 NVFTEFKRA---GLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 558

Query: 294 KGYCQQLQIDKAKELLREMADDAKI----------EPDVVSYNILIDGFILIDDSAGALT 343
             Y +  Q DK + +   M +  +           +P     N      +L      A++
Sbjct: 559 DAYGRYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVL-----AAVS 613

Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
            F+EM+  G+ P  ++++ ++ A +  +  + A+ + ++M R     V  +A  +L    
Sbjct: 614 VFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVLLEQM-RFFDGWVYGIAHGLL---- 668

Query: 404 CRMGLVE----EAKRIIERMKENGFYPNVATYGSLAN 436
             MGL E    EA+R+ + +    +    A Y +L +
Sbjct: 669 --MGLREQVWVEAQRLFDEISRMDYATGAAFYNALTD 703


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 184/419 (43%), Gaps = 26/419 (6%)

Query: 42  VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
           V K+ D  +          Y+  ++A     + +   +L   M + G  PD+   N+ I 
Sbjct: 212 VEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIY 271

Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
              + +R    + ++E++   G +  + T+Q++V+      + + AE I       +RD+
Sbjct: 272 YLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCD--NKKFAEAIGLWEEMVKRDL 329

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMK 221
              +       +        D+  E+  ++L   I  S               IY  L+ 
Sbjct: 330 KPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSV-------------CIYNALIS 376

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G+   G +    +++  MR    N   PD VTY  +++     G M++A +++ +M   G
Sbjct: 377 GFWRAGSIDKAYKIISFMR---TNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSG 433

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
           V  +R +YN LLKG C+  Q+DKA   + +  +      D VS NILID F        A
Sbjct: 434 VNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGF-CDTVSCNILIDAFCKTKKVKSA 492

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNM 398
           L  F EM  +G+    ++Y TL+          LA ++F++ML    DP V +    +N+
Sbjct: 493 LELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNL----YNI 548

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           ++   C++G  + A+ I   M +    P+  T+ +L   +    +  EAL L+K+++ R
Sbjct: 549 MLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTR 607



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/403 (19%), Positives = 159/403 (39%), Gaps = 55/403 (13%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           + PD   Y  V++   +  K  + + L+++M +   KPDV +   +I    + ++     
Sbjct: 294 TSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAF 353

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            +  R+L + I L +  + +L++ +   G ++ A  I+  MR                  
Sbjct: 354 ELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTN---------------- 397

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                      EP ++          Y  L+  Y   G +    
Sbjct: 398 -------------------------GCEPDIVT---------YNILLNHYCTIGMMEKAE 423

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           +++   R+ E +  +PD  +Y  ++  L K   +D+A   +++   +G   + ++ NIL+
Sbjct: 424 KLI---RKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNILI 480

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
             +C+  ++  A EL +EM     ++ D V+Y  LI+G   +     A   F +M    I
Sbjct: 481 DAFCKTKKVKSALELFKEMGYKG-MQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQI 539

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P    Y  ++         K A  +F  M++   V  D V +N L+    +     EA 
Sbjct: 540 DPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQ-KEVSPDTVTFNTLIYWLGKRSRAIEAL 598

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
            + + M+  G  P+  T+  L +G+    K   A  +W+ + E
Sbjct: 599 NLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMME 641



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 27/291 (9%)

Query: 250 DHVTYTT--VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           DH  +    +VS L   G+     + L  +   GV  +R  Y ILL GY +  + D   E
Sbjct: 120 DHSQFAIAYLVSLLFMDGNFALLSEFLGRVKSQGVALHRSLYRILLSGYVRAGKFDSVIE 179

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT--FFNEMRARGIAPTKISYTTLMK 365
              EM      E  V  YN  I   +L+ +    L   +++   A+G   T  +Y+  + 
Sbjct: 180 TFDEMVMSGCREFGV-DYNRYIG--VLVKNCCFDLVEKYYDMALAKGFCLTPFTYSRWIS 236

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           A   S++ +L  ++  +M +      DI A N+ +   C+   + +A +++E+M+  G  
Sbjct: 237 ALCQSNRIELVQELLVDMDK-LGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTS 295

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKER--------CEVKKEGV--NADSDLPPPL 475
           P+V TY ++ +G+   +K  EA+ LW+E+ +R        C     G+  N   D    L
Sbjct: 296 PDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFEL 355

Query: 476 KPDEELLDALADICV---------RAAFFRKALEIVACMEEHGIPPNKTKY 517
                 LD    +C+         RA    KA +I++ M  +G  P+   Y
Sbjct: 356 ASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTY 406



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 38/261 (14%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
           A +  +Y  L+ GY+  G+    +     M     +      V Y   +  LVK    D 
Sbjct: 155 ALHRSLYRILLSGYVRAGKFDSVIETFDEMVM---SGCREFGVDYNRYIGVLVKNCCFDL 211

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
             +        G      TY+  +   CQ  +I+  +ELL +M D     PD+ + NI I
Sbjct: 212 VEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDM-DKLGCSPDIWACNIYI 270

Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPR 388
                 +    AL    +MR +G +P  ++Y T++     + +   A  +++EM+ RD +
Sbjct: 271 YYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLK 330

Query: 389 ---------------------------------VKVDIVAWNMLVEGYCRMGLVEEAKRI 415
                                            +++ +  +N L+ G+ R G +++A +I
Sbjct: 331 PDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKI 390

Query: 416 IERMKENGFYPNVATYGSLAN 436
           I  M+ NG  P++ TY  L N
Sbjct: 391 ISFMRTNGCEPDIVTYNILLN 411



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 52  SDSKPDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
           S   PD  +YN +L   C      K F  + D M E G   D ++ N++I    +  +  
Sbjct: 432 SGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHM-EVGGFCDTVSCNILIDAFCKTKKVK 490

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
             + + + +   G+     T+ +L+      G   +AE + + M   + D    +  + L
Sbjct: 491 SALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIML 550

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                   G       +F  ++   ++P         T   N+ IY          G+ S
Sbjct: 551 HHLC--KVGHFKRAQTIFSHMIQKEVSPD--------TVTFNTLIYWL--------GKRS 592

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
             +  L   +        PD +T+  ++S L+  G    A +V   M   G+  +R
Sbjct: 593 RAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMMENGIILDR 648



 Score = 38.9 bits (89), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           ML +   P+V  ++ ++  L   G               KR +      I  +  PDT  
Sbjct: 534 MLNAQIDPNVNLYNIMLHHLCKVGH-------------FKRAQTIFSHMIQKEVSPDTVT 580

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N ++       +  + L LF  M   G +PD LT+  +I       +  L   V E ++
Sbjct: 581 FNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMM 640

Query: 121 EMGITL 126
           E GI L
Sbjct: 641 ENGIIL 646


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/485 (22%), Positives = 206/485 (42%), Gaps = 42/485 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+   Y  +++A + +G+  + L+L ++M   G  PDV T+N  I    +  R H    +
Sbjct: 268 PNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 327

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           ++R+L  G T    T+  L+      G ++ A  ++  +         ++    +  Y S
Sbjct: 328 VDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPN----VVLFNTLINGYVS 383

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G  D+   V  +             +L     P+   Y TL+ G   +G +     +
Sbjct: 384 --RGRLDEAKAVMHE------------SMLSVGCGPDIFTYNTLILGLCKKGYLVSAREL 429

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +  M+ +      P+ +TYT ++    K G ++ AR VL EM+  G+  N + YN L+  
Sbjct: 430 MNEMQIK---GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISA 486

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  ++  A  +  +M+     +PD+ ++N LI G   ++    AL  + +M   G+  
Sbjct: 487 LCKDEKVQDALNMFGDMSSKG-CKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIA 545

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y TL+ AF      + A K+ ++ML      +D + +N L++  CR G +E+   +
Sbjct: 546 NTITYNTLIHAFLRRGAMQEALKLVNDMLFRG-CPLDDITYNGLIKALCRAGNIEKGLAL 604

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
            E M   G  PN  +   L NG+        AL   +++  R                 L
Sbjct: 605 FEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHR----------------GL 648

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR--MFTSKH 533
            PD    ++L +   +    ++AL +   ++  GI P+   Y  + +  H +  MF   H
Sbjct: 649 TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTL-ISWHCKEGMFDDAH 707

Query: 534 ASQAR 538
              +R
Sbjct: 708 LLLSR 712



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 169/382 (44%), Gaps = 29/382 (7%)

Query: 55  KPDTAAYNAVLNACANLGKPKKF-LQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLL 112
            P+   +N ++N   + G+  +    + + M   G  PD+ TYN +I  LC    +K  L
Sbjct: 368 NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC----KKGYL 423

Query: 113 VFVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169
           V   E + EM I  C   + T+  L+  +   G LE A  ++  M           + L 
Sbjct: 424 VSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG---------KGLA 474

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           L              DE  +  L N     S     P  F  NS I+           +V
Sbjct: 475 LNAVGYNCLISALCKDEKVQDAL-NMFGDMSSKGCKPDIFTFNSLIFGLC--------KV 525

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
           +     LG  +         + +TY T++ A ++ G+M  A +++ +M   G P + ITY
Sbjct: 526 NKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITY 585

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
           N L+K  C+   I+K   L  +M     + P+ +S NILI+G     +   AL F  +M 
Sbjct: 586 NGLIKALCRAGNIEKGLALFEDMMSKG-LNPNNISCNILINGLCRTGNIQHALEFLRDMI 644

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
            RG+ P  ++Y +L+     + + + A  +FD+ L+   +  D + +N L+  +C+ G+ 
Sbjct: 645 HRGLTPDIVTYNSLINGLCKTGRAQEALNLFDK-LQVEGICPDAITYNTLISWHCKEGMF 703

Query: 410 EEAKRIIERMKENGFYPNVATY 431
           ++A  ++ R  ++GF PN  T+
Sbjct: 704 DDAHLLLSRGVDSGFIPNEVTW 725



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 198/482 (41%), Gaps = 47/482 (9%)

Query: 80  LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           L D    +  +P   +YNV++ +    +   ++  V   +L  GI+  + TF  ++ A  
Sbjct: 187 LLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALC 246

Query: 140 GFGDLEIAETIVQAM-REGRRDVCKIIREL--DLEDYSSENEGDDDDDDEVFEKLLP--N 194
              +++ A  +++ M R G      + + L   L      NE     ++ +    +P  N
Sbjct: 247 LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVN 306

Query: 195 SINPSSEPP---------------LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
           + N +                   +L + F PNS  Y  LM G    G+V D  RML   
Sbjct: 307 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKV-DEARML--- 362

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE-MTRIGVPANRITYNILLKGYCQ 298
               +   +P+ V + T+++  V  G +D A+ V+ E M  +G   +  TYN L+ G C+
Sbjct: 363 ---LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCK 419

Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
           +  +  A+EL+ EM      EP+V++Y ILID F        A    +EM  +G+A   +
Sbjct: 420 KGYLVSARELMNEMQIKG-CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 478

Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
            Y  L+ A     + + A  +F +M      K DI  +N L+ G C++   EEA  + + 
Sbjct: 479 GYNCLISALCKDEKVQDALNMFGDM-SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQD 537

Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
           M   G   N  TY +L +         EAL L  ++  R                PL  D
Sbjct: 538 MLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR--------------GCPL--D 581

Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
           +   + L     RA    K L +   M   G+ PN      I +    R    +HA +  
Sbjct: 582 DITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC-NILINGLCRTGNIQHALEFL 640

Query: 539 QD 540
           +D
Sbjct: 641 RD 642



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 35/285 (12%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFV 115
           +   YN +++A     K +  L +F  M   G KPD+ T+N +I  LC     +  L   
Sbjct: 476 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 535

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +LE G+     T+ +L+ A++  G ++ A  +V  M         + R   L+D + 
Sbjct: 536 QDMLLE-GVIANTITYNTLIHAFLRRGAMQEALKLVNDM---------LFRGCPLDDITY 585

Query: 176 EN-------EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
                     G+ +    +FE ++   +NP             N+     L+ G    G 
Sbjct: 586 NGLIKALCRAGNIEKGLALFEDMMSKGLNP-------------NNISCNILINGLCRTGN 632

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
           +   +  L   R        PD VTY ++++ L K G    A  +  ++   G+  + IT
Sbjct: 633 IQHALEFL---RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAIT 689

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           YN L+  +C++   D A  LL    D   I P+ V++ IL+  FI
Sbjct: 690 YNTLISWHCKEGMFDDAHLLLSRGVDSGFI-PNEVTWYILVSNFI 733



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 123/315 (39%), Gaps = 50/315 (15%)

Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
            Y  ++  L  AG       +L +M + G+      + +++K Y +     +A  LL +M
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 190

Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
                 EP   SYN+++D  +  +        F EM ++GI+PT  ++  +MKA  L ++
Sbjct: 191 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNE 250

Query: 373 PKLANKVFDEMLRDPRV--------------KV--------------------DIVAWNM 398
              A  +  +M R   V              KV                    D+  +N 
Sbjct: 251 VDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFND 310

Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
            + G C+M  + EA ++++RM   GF PN  TYG L +G+    K  EA +L  ++    
Sbjct: 311 AIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPN 370

Query: 459 EV----------------KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
            V                + + V  +S L     PD    + L     +  +   A E++
Sbjct: 371 VVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELM 430

Query: 503 ACMEEHGIPPNKTKY 517
             M+  G  PN   Y
Sbjct: 431 NEMQIKGCEPNVITY 445



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 19/148 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P+  + + +++ L  +G+             ++   +F    I     PD   
Sbjct: 608 MMSKGLNPNNISCNILINGLCRTGN-------------IQHALEFLRDMIHRGLTPDIVT 654

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR---KHLLVFVLE 117
           YN+++N     G+ ++ L LFD++   G  PD +TYN +I    +       HLL   L 
Sbjct: 655 YNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL---LS 711

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLE 145
           R ++ G      T+  LV+ ++  GD E
Sbjct: 712 RGVDSGFIPNEVTWYILVSNFIKEGDQE 739


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 180/426 (42%), Gaps = 66/426 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +PDTA +  ++     +GK  + L +FD+M   G +P+V+TY  ++  LC        L 
Sbjct: 123 QPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALN 182

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
              E I + GI+  + T+ SL+ A     + +   T++  M + +  +   +  L++   
Sbjct: 183 LFSEMIAK-GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSK--IMPNVVSLNIVVD 239

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPS--------------SEPPLLPKTF--------AP 211
           +   EG   +  +V + ++   + P               SE     K F          
Sbjct: 240 ALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVC 299

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N   Y TL+ GY    R+   + +   M RQE     P+ +TY+T++  L   G +  A 
Sbjct: 300 NVVSYNTLINGYCKIQRIDKAMYLFEEMCRQE---LIPNTMTYSTLIHGLCHVGRLQDAI 356

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +  EM   G   N +TY+ILL   C+  ++ +A  LL+ + + + ++PDV  YNI IDG
Sbjct: 357 ALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI-EGSNLDPDVQVYNIAIDG 415

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
                D   A   F+ +  RG+ P                                    
Sbjct: 416 MCRAGDLEAARDLFSNLAPRGLQP------------------------------------ 439

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D+   N+++ G C+ GL++EA ++   M ENG   N  TY ++  G+    K   A+ L 
Sbjct: 440 DVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLL 499

Query: 452 KEIKER 457
           +E+  R
Sbjct: 500 EEMLAR 505



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/458 (23%), Positives = 188/458 (41%), Gaps = 71/458 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P    +  +L + A +      L L  +M  FG  PDV T  ++I      +R    + V
Sbjct: 54  PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSV 113

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L +IL++G      TF +LV      G                    KI   LD      
Sbjct: 114 LAKILKLGHQPDTATFTTLVRGLCVVG--------------------KIGEALD------ 147

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                      VF+K             ++ + F PN   Y TLM G   + ++++ + +
Sbjct: 148 -----------VFDK-------------MVGEGFQPNVVTYGTLMNGLCKDRQLTEALNL 183

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M  +      PD  TY +++ AL           +L EM +  +  N ++ NI++  
Sbjct: 184 FSEMIAK---GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDA 240

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C++ ++ +A +++ +M     +EPDVV+Y  L+DG  L  +   A+  F+ M   G   
Sbjct: 241 LCKEGKVTEAHDVV-DMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVC 299

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SY TL+  +    +   A  +F+EM R   +  + + ++ L+ G C +G +++A  +
Sbjct: 300 NVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIP-NTMTYSTLIHGLCHVGRLQDAIAL 358

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
              M   G  PN+ TY  L + +    +  EA+ L K I        EG N D       
Sbjct: 359 FNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI--------EGSNLD------- 403

Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
            PD ++ +   D   RA     A ++ + +   G+ P+
Sbjct: 404 -PDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPD 440



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 93/445 (20%), Positives = 182/445 (40%), Gaps = 82/445 (18%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           +L+ G+ P    ++T+V  L   G  G  E++ +FD +V               +P+   
Sbjct: 117 ILKLGHQPDTATFTTLVRGLCVVGKIG--EALDVFDKMVGE-----------GFQPNVVT 163

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
           Y  ++N      +  + L LF +M   G  PD+ TYN +I  LC     KH+   +L  +
Sbjct: 164 YGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTT-LLNEM 222

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           ++  I   + +   +V A    G +  A  +V  M +G         E D+  Y++  +G
Sbjct: 223 VKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGV-------EPDVVTYAALMDG 275

Query: 180 -----DDDDDDEVFEKLLPNSI--NPSSEPPLLP--------------------KTFAPN 212
                + D+  +VF+ ++ N    N  S   L+                     +   PN
Sbjct: 276 HCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPN 335

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAM--------------------------------R 240
           +  Y+TL+ G  + GR+ D + +   M                                +
Sbjct: 336 TMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLK 395

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
             E +   PD   Y   +  + +AG ++ AR + + +   G+  +  T+NI+++G C++ 
Sbjct: 396 AIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRG 455

Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
            +D+A +L REM ++  +  +  +YN +  G +  + ++ A+    EM ARG +    + 
Sbjct: 456 LLDEASKLFREMDENGCLR-NGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTT 514

Query: 361 TTLMKAFALSSQPKLANKVFDEMLR 385
             L+K  +     +   ++  E +R
Sbjct: 515 ALLVKMLSDDGLDQSVKQILCEFMR 539



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 20/220 (9%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P +  +  L+     +   +  L+   +M + GI P   + T ++ +F   ++   A  V
Sbjct: 54  PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSV 113

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
             ++L+    + D   +  LV G C +G + EA  + ++M   GF PNV TYG+L NG+ 
Sbjct: 114 LAKILKLGH-QPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLC 172

Query: 440 LARKPGEALLLWKEIKER-------------------CEVKKEGVNADSDLPPPLKPDEE 480
             R+  EAL L+ E+  +                   CE K      +  +   + P+  
Sbjct: 173 KDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVV 232

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            L+ + D   +     +A ++V  M + G+ P+   Y  +
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAAL 272


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 173/384 (45%), Gaps = 36/384 (9%)

Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
           F  L+ AY   GD   AE ++  M +       + +   +E Y     G  ++ + +F +
Sbjct: 139 FFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKG--GRYNNAEAIFRR 196

Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
           +      P            P++  Y  ++K ++   +  +   +   +   E++   PD
Sbjct: 197 M--QKWGPE-----------PSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPD 243

Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
              +  ++    KAGS ++AR+  A+M  +G+    +TYN L+       ++    + ++
Sbjct: 244 QKMFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETNYKEVSNIYDQMQ 303

Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
                A + PDVVSY +L+  +        AL  F EM   GI PT+ +Y  L+ AF++S
Sbjct: 304 R----ADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSIS 359

Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
              + A  VF  M RD R   D+ ++  ++  Y     +E A++  +R+ ++GF PNV T
Sbjct: 360 GMVEQAQTVFKSMRRD-RYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVT 418

Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
           YG+L  G +   K  +  ++ K+ +E              L   +K ++ +L  + D   
Sbjct: 419 YGTLIKGYA---KINDLEMVMKKYEEM-------------LMRGIKANQTILTTIMDAYG 462

Query: 491 RAAFFRKALEIVACMEEHGIPPNK 514
           ++  F  A+     ME +GIPP++
Sbjct: 463 KSGDFDSAVHWFKEMESNGIPPDQ 486



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 157/365 (43%), Gaps = 22/365 (6%)

Query: 64  VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
           ++ A   LG      ++   M++ G  P+V++   +++   +  R +    +  R+ + G
Sbjct: 142 LITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWG 201

Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL-DLEDYSSENEGDDD 182
                 T+Q ++  +V       AE +   +        K  +++ ++  Y  +  G  +
Sbjct: 202 PEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMIYMHKKAGSYE 261

Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
              + F ++    I  +             +  Y +LM    N   VS+   +   M+R 
Sbjct: 262 KARKTFAQMAELGIQQT-------------TVTYNSLMSFETNYKEVSN---IYDQMQRA 305

Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
           +     PD V+Y  +VSA  KA   + A  V  EM   G+   R  YNILL  +     +
Sbjct: 306 D---LRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMV 362

Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
           ++A+ + + M  D +  PD+ SY  ++  +I  DD  GA  FF  +   G  P  ++Y T
Sbjct: 363 EQAQTVFKSMRRD-RYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGT 421

Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
           L+K +A  +  ++  K ++EML    +K +      +++ Y + G  + A    + M+ N
Sbjct: 422 LIKGYAKINDLEMVMKKYEEMLMRG-IKANQTILTTIMDAYGKSGDFDSAVHWFKEMESN 480

Query: 423 GFYPN 427
           G  P+
Sbjct: 481 GIPPD 485



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 25/263 (9%)

Query: 58  TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           T  YN++++   N    K+   ++DQM     +PDV++Y +++    +A R+   + V E
Sbjct: 279 TVTYNSLMSFETNY---KEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFE 335

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLEDYSS 175
            +L+ GI      +  L+ A+   G +E A+T+ ++MR  R   D+C     L     S+
Sbjct: 336 EMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTML-----SA 390

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
               DD +  E F K             L+   F PN   Y TL+KGY    +++D   +
Sbjct: 391 YINADDMEGAEKFFK------------RLIQDGFEPNVVTYGTLIKGY---AKINDLEMV 435

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +             +    TT++ A  K+G  D A     EM   G+P ++   N+LL  
Sbjct: 436 MKKYEEMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSL 495

Query: 296 YCQQLQIDKAKELLREMADDAKI 318
                + ++A EL+   ++++ +
Sbjct: 496 AKTDEEREEANELVVHFSENSSL 518



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 166/400 (41%), Gaps = 51/400 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M ++GY P+V + + ++      G     E++       +R++K+         +P    
Sbjct: 162 MNKNGYAPNVVSQTALMEAYGKGGRYNNAEAI------FRRMQKWG-------PEPSAFT 208

Query: 61  YNAVLNACANLGKPKKFLQLFDQM---HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLE 117
           Y  +L       K ++  +LFD +        KPD   +N+MI +  +A           
Sbjct: 209 YQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMIYMHKKAGSYEKARKTFA 268

Query: 118 RILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR-DVCKIIRELDLEDYSSE 176
           ++ E+GI     T+ SL++    +   E++    Q  R   R DV  +   L +  Y   
Sbjct: 269 QMAELGIQQTTVTYNSLMSFETNYK--EVSNIYDQMQRADLRPDV--VSYALLVSAYGKA 324

Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
               +++   VFE++L   I P+              + Y  L+  +   G V     + 
Sbjct: 325 RR--EEEALAVFEEMLDAGIRPT-------------RKAYNILLDAFSISGMVEQAQTVF 369

Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
            +MRR   +   PD  +YTT++SA + A  M+ A +    + + G   N +TY  L+KGY
Sbjct: 370 KSMRR---DRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGY 426

Query: 297 CQ----QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
            +    ++ + K +E+L        I+ +      ++D +    D   A+ +F EM + G
Sbjct: 427 AKINDLEMVMKKYEEMLMR-----GIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNG 481

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKV---FDEMLRDPRV 389
           I P + +   L+       + + AN++   F E    P+V
Sbjct: 482 IPPDQKAKNVLLSLAKTDEEREEANELVVHFSENSSLPKV 521


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 180/431 (41%), Gaps = 61/431 (14%)

Query: 11  KAWSTVVSRLAASGDDG---PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           + +ST    ++  G+ G     ++VK  D      R+     + +   P  A+++ +L A
Sbjct: 26  RHYSTNTCSISVKGNFGVSNEFQNVKCLDDAFSLFRQM----VRTKPLPSVASFSKLLKA 81

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
             ++      + LF ++H+          ++++  C    R  L   VL    + GI   
Sbjct: 82  MVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYN 141

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
             TF +L+           AE  V+                              D   +
Sbjct: 142 EVTFTTLIRGL-------FAENKVK------------------------------DAVHL 164

Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
           F+KL+  +I              PN  +Y T+M G   +G    T +    +R  E  ++
Sbjct: 165 FKKLVRENICE------------PNEVMYGTVMNGLCKKGH---TQKAFDLLRLMEQGST 209

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
            P+  TYT V+ A  K G +D A  +L EM +  +P +  TY+ L+   C+  Q +  + 
Sbjct: 210 KPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRT 269

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           L  EM     I P+V ++N +IDG         A      M  +G+ P  I+Y  ++  +
Sbjct: 270 LFLEMI-HLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGY 328

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
            L  Q   A ++FD M+ +  ++ DI+++N+L+ GY R   ++EA ++   + + G  P+
Sbjct: 329 GLRGQVDRAREIFDSMI-NKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPS 387

Query: 428 VATYGSLANGI 438
           + T   L +G+
Sbjct: 388 IVTCNVLLHGL 398



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 4/246 (1%)

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
           N   +TTL++G   E +V D V +   + R+  N   P+ V Y TV++ L K G   +A 
Sbjct: 141 NEVTFTTLIRGLFAENKVKDAVHLFKKLVRE--NICEPNEVMYGTVMNGLCKKGHTQKAF 198

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331
            +L  M +     N  TY I++  +C+   +D A  LL EM   + I PD+ +Y+ LID 
Sbjct: 199 DLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKS-IPPDIFTYSTLIDA 257

Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
              +       T F EM    I P   ++ +++       + + A ++   M+ +  V  
Sbjct: 258 LCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMI-EKGVDP 316

Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
           D++ +NM+++GY   G V+ A+ I + M      P++ +Y  L NG +  +K  EA+ + 
Sbjct: 317 DVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVC 376

Query: 452 KEIKER 457
           +EI ++
Sbjct: 377 REISQK 382



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 174/434 (40%), Gaps = 88/434 (20%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +P+   Y  V+N     G  +K   L   M +   KP+  TY ++I    +         
Sbjct: 175 EPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATS 234

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
           +L  + +  I   + T+ +L+ A       E   T+   M             + L  Y 
Sbjct: 235 LLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEM-------------IHLNIY- 280

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
                                               PN   + +++ G   EG+V D   
Sbjct: 281 ------------------------------------PNVCTFNSVIDGLCKEGKVEDAEE 304

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
           +   MR   +    PD +TY  ++      G +DRAR++   M    +  + I+YNIL+ 
Sbjct: 305 I---MRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILIN 361

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GY +Q +ID+A ++ RE++    ++P +V+ N+L+ G   +  +  A  FF+EM + G  
Sbjct: 362 GYARQKKIDEAMQVCREISQKG-LKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHI 420

Query: 355 PTKISYTTLMKAF--------ALSSQPKLANK-----------VFDEMLRDPR------- 388
           P   ++ TL+  +        A+S   KL  +           V D + ++ +       
Sbjct: 421 PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHAT 480

Query: 389 --------VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
                   +  D++ +  ++ GYC+ GL++EAK ++ +M++NG   +  TY  +  G   
Sbjct: 481 FEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLR 540

Query: 441 ARKPGEALLLWKEI 454
           + K  E     +EI
Sbjct: 541 SNKVSEMKAFLEEI 554



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 152/374 (40%), Gaps = 67/374 (17%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLL 112
           +KP+T  Y  V++A    G       L ++M +    PD+ TY+ +I  LC  +  +++ 
Sbjct: 209 TKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVR 268

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
              LE I  + I   + TF S++      G +E AE I++ M E   D   I   + ++ 
Sbjct: 269 TLFLEMI-HLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDG 327

Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPS---------------------------SEPPLL 205
           Y     G  D   E+F+ ++  SI P                            S+  L 
Sbjct: 328 YGL--RGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLK 385

Query: 206 PKTFAPNSRIY------------------------------TTLMKGYMNEGRVSDTVRM 235
           P     N  ++                               TL+ GY   G V + +  
Sbjct: 386 PSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSH 445

Query: 236 LGAM-RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
              + RR+ED         YT V+  L K G +D+A     ++  IG+  + ITY  ++ 
Sbjct: 446 FHKLERRREDTNIQ----IYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMIS 501

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           GYCQ+  +D+AK++LR+M D+  +  D  +YN+++ GF+  +  +    F  E+  +  +
Sbjct: 502 GYCQEGLLDEAKDMLRKMEDNGCL-ADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFS 560

Query: 355 PTKISYTTLMKAFA 368
               +   LM   A
Sbjct: 561 FEAATVELLMDIIA 574



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 43/267 (16%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH-VTYTTVVSALVKAGSMDR 269
           P+   ++ L+K  ++    S  V +     R+      P H    + VV++       D 
Sbjct: 70  PSVASFSKLLKAMVHMKHYSSVVSLF----REIHKLRIPVHEFILSIVVNSCCLMHRTDL 125

Query: 270 ARQVLAEMTRIGVPANRITYNILLK----------------------------------- 294
              VLA   + G+P N +T+  L++                                   
Sbjct: 126 GFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVM 185

Query: 295 -GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C++    KA +LLR M +    +P+  +Y I+ID F       GA +  NEM+ + I
Sbjct: 186 NGLCKKGHTQKAFDLLRLM-EQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSI 244

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P   +Y+TL+ A    SQ +    +F EM+    +  ++  +N +++G C+ G VE+A+
Sbjct: 245 PPDIFTYSTLIDALCKLSQWENVRTLFLEMIH-LNIYPNVCTFNSVIDGLCKEGKVEDAE 303

Query: 414 RIIERMKENGFYPNVATYGSLANGISL 440
            I+  M E G  P+V TY  + +G  L
Sbjct: 304 EIMRYMIEKGVDPDVITYNMIIDGYGL 330



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 31/277 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G  P V  ++ ++      G              V R R+  D  I    +PD  +
Sbjct: 309 MIEKGVDPDVITYNMIIDGYGLRGQ-------------VDRAREIFDSMINKSIEPDIIS 355

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++N  A   K  + +Q+  ++ + G KP ++T NV++       R        + +L
Sbjct: 356 YNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEML 415

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G    + T  +L+  Y   G +E A +    + E RR+   I     + D   +N G 
Sbjct: 416 SAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKL-ERRREDTNIQIYTAVIDGLCKN-GK 473

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
            D     FEKL           PL+     P+   YT ++ GY  EG + +   ML   R
Sbjct: 474 LDKAHATFEKL-----------PLIG--LHPDVITYTAMISGYCQEGLLDEAKDML---R 517

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           + EDN    D+ TY  +V   +++  +   +  L E+
Sbjct: 518 KMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEI 554


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 178/399 (44%), Gaps = 39/399 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+  +YN V+N     G+  K   LF +M   G  P+++TYN +I    +A        V
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+++ + G                    LE A  +++ M  G      +   L ++ Y  
Sbjct: 197 LQQMFDKG-------------------QLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYC- 236

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   +   +F+ ++    NP             ++  Y TL+ GY  +G + D   +
Sbjct: 237 -KIGRCTEARNIFDSMVRRGQNP-------------DAYTYRTLLHGYATKGALVDMHDL 282

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M   +D     DHV +  ++ A  K  ++D+A     EM + G   N +TY  ++  
Sbjct: 283 LALM--IQDGIPLEDHV-FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDI 339

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C+  +++ A     +M  +  + PD++++  LI G   I +         EM  RGI P
Sbjct: 340 LCKAGRVEDAVSHFSQMVSEG-LSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHP 398

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I   T+M +     +   A+  FD+++    VK D+V++ +L++GYC  G ++E+ ++
Sbjct: 399 NAIFLNTIMDSLCKEGRVLEAHDFFDQIIH-VGVKPDVVSYTILIDGYCLDGKMDESIKL 457

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
           + RM   G  P+  TY +L NG     +  +AL L++E+
Sbjct: 458 LGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREM 496



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/531 (21%), Positives = 228/531 (42%), Gaps = 55/531 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESV--KLFDV-----VVKRVRKFSDPDIVSD 53
           ML  G+ P++  +++V+  L  +      E+V  ++FD       V+ ++K S   +   
Sbjct: 165 MLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGL--- 221

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
            +PD   Y+ +++    +G+  +   +FD M   G  PD  TY  ++     A++  L+ 
Sbjct: 222 -QPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLH--GYATKGALVD 278

Query: 114 F--VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELD 169
              +L  +++ GI L    F  L+ AY     L+ A T    MR+     +V      +D
Sbjct: 279 MHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVID 338

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRV 229
           +   +   E      D V           S    ++ +  +P+   +T+L+ G    G  
Sbjct: 339 ILCKAGRVE------DAV-----------SHFSQMVSEGLSPDIITFTSLIHGLCTIGEW 381

Query: 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289
               ++   M    +   HP+ +   T++ +L K G +  A     ++  +GV  + ++Y
Sbjct: 382 KKVEKLSFEMI---NRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSY 438

Query: 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
            IL+ GYC   ++D++ +LL  M     + PD V+Y+ L++G+        AL  + EM 
Sbjct: 439 TILIDGYCLDGKMDESIKLLGRMVS-IGLRPDNVTYSALLNGYCKNGRVDDALALYREMF 497

Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
           ++ + P  I+Y  ++     + +   A + + +++ D  +++ I  +N+++ G C    V
Sbjct: 498 SKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIV-DSGIQLGINTYNIVLGGLCENSFV 556

Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
           +EA R+ + ++   F   V T+  +  G+    + G+A  L+  I               
Sbjct: 557 DEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAI--------------- 601

Query: 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
            LP  L PD  +   +    +      ++ E+   ME++G   N      I
Sbjct: 602 -LPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAI 651



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 27/195 (13%)

Query: 270 ARQVLAEMTRIGV---PANRITYNILLKGYCQQLQIDKAKE--------LLREMADDA-K 317
           A  +   M ++GV     +  T+ IL++ +C    +D A E         +  MADD   
Sbjct: 75  AVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYN 134

Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT----LMKAFALSSQP 373
             P+V+SYN++I+G     +   A T F+EM  +G  P  ++Y +    L KA A+    
Sbjct: 135 CPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAE 194

Query: 374 KLANKVFDEMLRDPRVKV-----------DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
            +  ++FD+   +  V++           D+V +++L++ YC++G   EA+ I + M   
Sbjct: 195 AVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRR 254

Query: 423 GFYPNVATYGSLANG 437
           G  P+  TY +L +G
Sbjct: 255 GQNPDAYTYRTLLHG 269



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 18/223 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   Y+A+LN     G+    L L+ +M     KP+ +TYN+++     A R      
Sbjct: 467 RPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAARE 526

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
              +I++ GI L + T+  ++        ++ A  + Q +R   ++    +R  ++    
Sbjct: 527 FYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRS--KEFQLEVRTFNIMIVG 584

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G   D   +F  +LP+ +              P++ IY  +++ ++ EG + ++  
Sbjct: 585 LLKVGRIGDAKSLFSAILPSGL-------------VPDAIIYGLMIQSHIEEGLLEESDE 631

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
           +  +M   E N    +  T   +V  L++ G + RA   L ++
Sbjct: 632 LFLSM---EKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKI 671



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 20/199 (10%)

Query: 338 SAGALTFFNEMRARGI---APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV--- 391
           +A A++ FN M   G+   A    ++  L++ F       L +   +E  R  R  V   
Sbjct: 72  AALAVSLFNTMAQVGVNKLATDACTFGILIRCFC---NVGLLDFALEEESRGSRAAVHMM 128

Query: 392 ---------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
                    +++++NM++ G  + G V++A  +   M   GF PN+ TY S+ +G+  A+
Sbjct: 129 ADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQ 188

Query: 443 KPGEALLLWKEIKERCEVKKEGVNADSDLP-PPLKPDEELLDALADICVRAAFFRKALEI 501
              +A  + +++ ++ ++ +E V     +    L+PD      L D   +     +A  I
Sbjct: 189 AMDKAEAVLQQMFDKGQL-EEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNI 247

Query: 502 VACMEEHGIPPNKTKYKKI 520
              M   G  P+   Y+ +
Sbjct: 248 FDSMVRRGQNPDAYTYRTL 266


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 175/404 (43%), Gaps = 62/404 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           P T   N +L+  + L + +     +  M+    K +V T+N+MI  LC     K    F
Sbjct: 189 PKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGF 248

Query: 115 VLERILE-MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
           +   I+E  GI   + T+ +LV  Y   G +E A  I+  M+                  
Sbjct: 249 L--GIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKS----------------- 289

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                            K F P+ + Y  ++    NEGR S+ +
Sbjct: 290 ---------------------------------KGFQPDLQTYNPILSWMCNEGRASEVL 316

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           R +  +         PD V+Y  ++      G ++ A     EM + G+     TYN L+
Sbjct: 317 REMKGI------GLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLI 370

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G   + +I+ A+ L+RE+ +   I  D V+YNI+I+G+    D+  A    +EM   GI
Sbjct: 371 HGLFMENKIEAAEILIREIREKG-IVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGI 429

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            PT+ +YT+L+      ++ + A+++F++++    +K D+V  N L++G+C  G ++ A 
Sbjct: 430 KPTQFTYTSLIYVLCRRNKTREADELFEKVV-GKGMKPDLVMMNTLMDGHCATGNMDRAF 488

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
            +++ M      P+  TY  L  G+    K  EA  L  E+K R
Sbjct: 489 SLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRR 532



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 155/329 (47%), Gaps = 22/329 (6%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
           +PD   YN +L+   N G+  + L+   +M   G  PD ++YN++I+ C+          
Sbjct: 293 QPDLQTYNPILSWMCNEGRASEVLR---EMKGIGLVPDSVSYNILIRGCSNNGDLETAFA 349

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
             + +++ G+     T+ +L+        +E AE +++ +RE    +  +   + +  Y 
Sbjct: 350 YRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYC 409

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               GD      + ++++ + I P+         F   S IY    +   N+ R +D + 
Sbjct: 410 --QHGDAKKAFALHDEMMTDGIKPTQ--------FTYTSLIYVLCRR---NKTREADEL- 455

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
                 +       PD V   T++      G+MDRA  +L EM R+ +  + +TYN L++
Sbjct: 456 ----FEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMR 511

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
           G C + + ++A+EL+ EM     I+PD +SYN LI G+    D+  A    +EM + G  
Sbjct: 512 GLCGEGKFEEARELMGEMKRRG-IKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFN 570

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM 383
           PT ++Y  L+K  + +   +LA ++  EM
Sbjct: 571 PTLLTYNALLKGLSKNQDGELAEELLREM 599



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 26/307 (8%)

Query: 213 SRIYT--TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           S +YT   ++     EG++      LG M   E     P  VTY T+V      G ++ A
Sbjct: 224 SNVYTFNIMINVLCKEGKLKKAKGFLGIM---ESFGIKPTIVTYNTLVQGYSLRGRIEGA 280

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           R +++EM   G   +  TYN +L   C +    +A E+LREM     + PD VSYNILI 
Sbjct: 281 RMIISEMKSKGFQPDLQTYNPILSWMCNE---GRASEVLREMKGIGLV-PDSVSYNILIR 336

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G     D   A  + +EM  +G+ PT  +Y TL+    + ++ + A  +  E +R+  + 
Sbjct: 337 GCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIRE-IREKGIV 395

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
           +D V +N+++ GYC+ G  ++A  + + M  +G  P   TY SL   +    K  EA  L
Sbjct: 396 LDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADEL 455

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
           ++++                +   +KPD  +++ L D         +A  ++  M+   I
Sbjct: 456 FEKV----------------VGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNI 499

Query: 511 PPNKTKY 517
            P+   Y
Sbjct: 500 DPDDVTY 506



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 159/375 (42%), Gaps = 45/375 (12%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G+ P ++ ++ ++S +   G    V            +R+     +V    PD+ +
Sbjct: 287 MKSKGFQPDLQTYNPILSWMCNEGRASEV------------LREMKGIGLV----PDSVS 330

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN ++  C+N G  +      D+M + G  P   TYN +I      ++      ++  I 
Sbjct: 331 YNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 390

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREGRRDVCKIIRELDLEDYSS 175
           E GI L   T+  ++  Y   GD + A     E +   ++  +     +I  L   + + 
Sbjct: 391 EKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTR 450

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           E        DE+FEK++              K   P+  +  TLM G+   G +     +
Sbjct: 451 EA-------DELFEKVVG-------------KGMKPDLVMMNTLMDGHCATGNMDRAFSL 490

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           L  M R   +   PD VTY  ++  L   G  + AR+++ EM R G+  + I+YN L+ G
Sbjct: 491 LKEMDRMNID---PDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISG 547

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y ++     A  ++R+        P +++YN L+ G     D   A     EM++ GI P
Sbjct: 548 YSKKGDTKHAF-IVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVP 606

Query: 356 TKISYTTLMKAFALS 370
              S+ ++++A + S
Sbjct: 607 NDSSFCSVIEAMSKS 621



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 140/330 (42%), Gaps = 25/330 (7%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P    Y TL++GY   GR+     ++  M+ +      PD  TY  ++S +   G   RA
Sbjct: 259 PTIVTYNTLVQGYSLRGRIEGARMIISEMKSK---GFQPDLQTYNPILSWMCNEG---RA 312

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
            +VL EM  IG+  + ++YNIL++G      ++ A     EM     + P   +YN LI 
Sbjct: 313 SEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMV-PTFYTYNTLIH 371

Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
           G  + +    A     E+R +GI    ++Y  ++  +      K A  + DEM+ D  +K
Sbjct: 372 GLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDG-IK 430

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
                +  L+   CR     EA  + E++   G  P++    +L +G         A  L
Sbjct: 431 PTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSL 490

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510
            KE+        + +N D        PD+   + L         F +A E++  M+  GI
Sbjct: 491 LKEM--------DRMNID--------PDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGI 534

Query: 511 PPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
            P+   Y  + +  +S+   +KHA   R +
Sbjct: 535 KPDHISYNTL-ISGYSKKGDTKHAFIVRDE 563



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 5/169 (2%)

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
           I ++ +++ YCQ   +D+A E    M +    +P   + N ++     ++    A  F+ 
Sbjct: 157 ILFDFMVRFYCQLRMVDEAIECFYLMKEKG-FDPKTETCNHILSLLSRLNRIENAWVFYA 215

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +M    I     ++  ++       + K A K F  ++    +K  IV +N LV+GY   
Sbjct: 216 DMYRMEIKSNVYTFNIMINVLCKEGKLKKA-KGFLGIMESFGIKPTIVTYNTLVQGYSLR 274

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           G +E A+ II  MK  GF P++ TY  +   +S     G A  + +E+K
Sbjct: 275 GRIEGARMIISEMKSKGFQPDLQTYNPI---LSWMCNEGRASEVLREMK 320



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
           PD   YN ++      GK ++  +L  +M   G KPD ++YN +I     +   KH  + 
Sbjct: 501 PDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFI- 559

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EG----RRDVCKIIRELD 169
           V + +L +G    + T+ +L+       D E+AE +++ M+ EG        C +I  + 
Sbjct: 560 VRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMS 619

Query: 170 LED 172
             D
Sbjct: 620 KSD 622



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
           A+  F  M+ +G  P   +   ++   +  ++ + A   + +M R   +K ++  +N+++
Sbjct: 175 AIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYR-MEIKSNVYTFNIMI 233

Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
              C+ G +++AK  +  M+  G  P + TY +L  G SL  +   A ++  E+K +
Sbjct: 234 NVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSK 290


>gi|302755512|ref|XP_002961180.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
 gi|300172119|gb|EFJ38719.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
          Length = 497

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 174/390 (44%), Gaps = 28/390 (7%)

Query: 88  GAKPDVLTYNVMIKLCA---RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
           G +P V  Y V I       + S    L+  +E   E G+      F +++  +   G +
Sbjct: 46  GHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEE--EDGLAPDSVCFNTVINGWCNEGQM 103

Query: 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN-PSSEPP 203
           E A  +VQ MR+             ++ Y     G  +   ++   LL  + N PSSE  
Sbjct: 104 EEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVA--GQAEQAQQLVLHLLNKTRNSPSSEDG 161

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           L P    PN R   TL+  +  EGR+ +  R++  ++        PD VTY T+  A   
Sbjct: 162 LEP-VARPNLRTMNTLLNAWCREGRLEEAWRVVAMIK---SAGMQPDAVTYNTLAKAYAA 217

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +     ++A+M    +  N  TY IL+  YCQ    ++  +LL  +  +  + PDVV
Sbjct: 218 AGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEG-LHPDVV 276

Query: 324 SYNILIDGFILI--------------DDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
           ++N L+ G++                D         + M A G+ P   +Y+T+M  ++ 
Sbjct: 277 AFNTLLKGYVEQQSSQQQQDFQSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSS 336

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           +     A  +  EM +D RVK D+ A+ +L +GY R G   EA+ +++ M  +G  PNV 
Sbjct: 337 AGVADKAQTILLEMQQD-RVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVV 395

Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCE 459
            Y ++ +G     +  +AL + + + ER E
Sbjct: 396 VYTTIISGWCSMGRMDDALRVLELMLERGE 425



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/471 (21%), Positives = 193/471 (40%), Gaps = 102/471 (21%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G+ P V+ ++  ++ + A          K      + +++  + D ++   PD+  +N V
Sbjct: 46  GHRPSVECYTVAIAEVVAE---------KKMSEAQQLLKQMEEEDGLA---PDSVCFNTV 93

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK---LCARASRKHLLVFVL----- 116
           +N   N G+ ++ +++  +M +   +P   TYN +IK   +  +A +   LV  L     
Sbjct: 94  INGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTR 153

Query: 117 -----ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
                E  LE      + T  +L+ A+   G LE A  +V  ++                
Sbjct: 154 NSPSSEDGLEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSA-------------- 199

Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
                                                  P++  Y TL K Y   GRV++
Sbjct: 200 ------------------------------------GMQPDAVTYNTLAKAYAAAGRVAE 223

Query: 232 TVRMLGAMRRQEDNAS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
              ++  M+    NA   P+  TY  ++S   + G  +R  Q+L+ +   G+  + + +N
Sbjct: 224 LEDLIADMK----NARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAFN 279

Query: 291 ILLKGYC-----------------QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            LLKGY                  QQL+++   +L   MA +  + PDV +Y+ +++ + 
Sbjct: 280 TLLKGYVEQQSSQQQQDFQSQENDQQLKLEMVLDL---MAANG-VRPDVTTYSTIMNWWS 335

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
               +  A T   EM+   + P   ++  L K +  S +   A  +  +M     V  ++
Sbjct: 336 SAGVADKAQTILLEMQQDRVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHG-VAPNV 394

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
           V +  ++ G+C MG +++A R++E M E G  PN+ T  +L  G   AR+P
Sbjct: 395 VVYTTIISGWCSMGRMDDALRVLELMLERGEAPNLNTVQTLVWGFCEARQP 445



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
           +G  P+   YT  +       +   A ++  +M  +  +  D V +N ++ G+C  G +E
Sbjct: 45  QGHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQME 104

Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
           EA R+++ M++    P  +TY +L  G  +A +  +A  L   +  +    +   +++  
Sbjct: 105 EAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNK---TRNSPSSEDG 161

Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           L P  +P+   ++ L +   R     +A  +VA ++  G+ P+   Y  +
Sbjct: 162 LEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTL 211



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  +G  P V  +ST+++  +++G     +++ L ++   RV            KPD  A
Sbjct: 315 MAANGVRPDVTTYSTIMNWWSSAGVADKAQTI-LLEMQQDRV------------KPDVRA 361

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +  +       G+  +   L   M   G  P+V+ Y  +I       R    + VLE +L
Sbjct: 362 FAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMDDALRVLELML 421

Query: 121 EMGITLCMTTFQSLVAAYV 139
           E G    + T Q+LV  + 
Sbjct: 422 ERGEAPNLNTVQTLVWGFC 440


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 189/423 (44%), Gaps = 44/423 (10%)

Query: 21  AASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80
           +A+   GP  +V LF+    R +    P ++S   P +  Y  +++ C    +P+  L  
Sbjct: 46  SAACGSGPALAVALFNRAASRAQG---PRVLS---PTSYTYAILMDCCTRAHRPELALAF 99

Query: 81  FDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139
           F Q+   G + D +  + ++K  C        L  +L R  E+G    + ++  L+ +  
Sbjct: 100 FGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLC 159

Query: 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEGDDDDDDEVFEKLLPN 194
             G    A+ +++ M EG   VC      D+  Y++       EGD +   ++F++++  
Sbjct: 160 NQGKSGQADNLLRMMAEGGT-VC----SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR 214

Query: 195 SINP-------------------SSEPPL---LPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
            I P                    +E  L   + K   PN+  Y  L+ GY + G+  + 
Sbjct: 215 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 274

Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
           VR+   MRR    +  PD VT + ++ +L K G +  AR V   M   G   +  +YNI+
Sbjct: 275 VRVFKEMRRH---SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIM 331

Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
           L GY  +  +    +L   M  D  I PD  ++N+ I  +        A+  FNEMR  G
Sbjct: 332 LNGYATKGCLVDMTDLFDLMLGDG-IAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHG 390

Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
           + P  ++Y T++ A     +   A + F++M+ D  V  D  A+N L++G+C  G++ + 
Sbjct: 391 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCTHGILLKT 449

Query: 413 KRI 415
           + I
Sbjct: 450 QGI 452



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/457 (22%), Positives = 185/457 (40%), Gaps = 75/457 (16%)

Query: 67  ACANLGKPKKFLQLFDQMHEFGAKPDVL-----TYNVMIKLCARASRKHLLVFVLERILE 121
           AC +   P   + LF++       P VL     TY +++  C RA R  L +    ++L 
Sbjct: 48  ACGS--GPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLR 105

Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
            G+ +                D  IA  +++   E +R                      
Sbjct: 106 TGLRV----------------DAIIASHLLKGFCEAKRT--------------------- 128

Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
              DE  + LL    + + E   +P  F+     Y  L+K   N+G+      +L  M  
Sbjct: 129 ---DEALDILL----HRTPELGCVPDVFS-----YNILLKSLCNQGKSGQADNLL-RMMA 175

Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
           +      PD V Y TV+    K G +++A  +  EM + G+P + +TYN ++   C+   
Sbjct: 176 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 235

Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
           +DKA+  LR+M +  ++ P+  +YN LI G+        A+  F EMR   I P  ++ +
Sbjct: 236 MDKAEAFLRQMVNK-RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLS 294

Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
            LM +     + K A  VFD M    +   D+ ++N+++ GY   G + +   + + M  
Sbjct: 295 MLMGSLCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG 353

Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
           +G  P+  T+       +      +A++++ E+++       GV          KPD   
Sbjct: 354 DGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRD------HGV----------KPDVVT 397

Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
              +     R      A+E    M + G+ P+K  Y 
Sbjct: 398 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 434



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 140/352 (39%), Gaps = 57/352 (16%)

Query: 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265
           P+  +P S  Y  LM       R    +   G + R        D +  + ++    +A 
Sbjct: 70  PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLR---TGLRVDAIIASHLLKGFCEAK 126

Query: 266 SMDRARQVLAEMT-RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI-EPDVV 323
             D A  +L   T  +G   +  +YNILLK  C Q +  +A  LLR MA+   +  PDVV
Sbjct: 127 RTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVV 186

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA----------------- 366
           +YN +IDGF    D   A   F EM  RGI P  ++Y +++ A                 
Sbjct: 187 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 246

Query: 367 ------------------FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
                             ++ + Q K A +VF EM R   +  D+V  +ML+   C+ G 
Sbjct: 247 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH-SILPDVVTLSMLMGSLCKYGK 305

Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
           ++EA+ + + M   G  P+V +Y  + NG +                + C V    +  D
Sbjct: 306 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYA---------------TKGCLVDMTDL-FD 349

Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             L   + PD    +             KA+ I   M +HG+ P+   Y+ +
Sbjct: 350 LMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 401



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 138/322 (42%), Gaps = 48/322 (14%)

Query: 5   GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
           G +P V +++ ++  L   G  G  +++         +R  ++   V    PD  AYN V
Sbjct: 143 GCVPDVFSYNILLKSLCNQGKSGQADNL---------LRMMAEGGTVC--SPDVVAYNTV 191

Query: 65  LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC-ARASRK---HLLVFVLERI 119
           ++     G   K   LF +M + G  PD++TYN ++  LC ARA  K    L   V +R+
Sbjct: 192 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 251

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
           L         T+ +L+  Y   G  + A  + + MR  R  +   +  L +   S    G
Sbjct: 252 LPNN-----WTYNNLIYGYSSTGQWKEAVRVFKEMR--RHSILPDVVTLSMLMGSLCKYG 304

Query: 180 DDDDDDEVFEKLLPNSINP------------SSEPPLLPKT----------FAPNSRIYT 217
              +  +VF+ +     NP            +++  L+  T           AP+   + 
Sbjct: 305 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 364

Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
             +K Y N G +   + +   MR   D+   PD VTY TV++AL + G MD A +   +M
Sbjct: 365 VQIKAYANCGMLDKAMIIFNEMR---DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 421

Query: 278 TRIGVPANRITYNILLKGYCQQ 299
              GV  ++  YN L++G+C  
Sbjct: 422 IDQGVAPDKYAYNCLIQGFCTH 443



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 21/188 (11%)

Query: 339 AGALTFFNEM--RARG---IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
           A A+  FN    RA+G   ++PT  +Y  LM     + +P+LA   F ++LR   ++VD 
Sbjct: 54  ALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTG-LRVDA 112

Query: 394 VAWNMLVEGYCRMGLVEEAKRII-ERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
           +  + L++G+C     +EA  I+  R  E G  P+V +Y  L   +    K G+A  L +
Sbjct: 113 IIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLR 172

Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
            + E   V                PD    + + D   +     KA ++   M + GIPP
Sbjct: 173 MMAEGGTV--------------CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPP 218

Query: 513 NKTKYKKI 520
           +   Y  +
Sbjct: 219 DLVTYNSV 226



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 14/158 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R   LP V   S ++  L   G              +K  R   D   +    PD  +
Sbjct: 281 MRRHSILPDVVTLSMLMGSLCKYGK-------------IKEARDVFDTMAMKGQNPDVFS 327

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +LN  A  G       LFD M   G  PD  T+NV IK  A        + +   + 
Sbjct: 328 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMR 387

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREG 157
           + G+   + T+++++AA    G ++ A E   Q + +G
Sbjct: 388 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 425



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 13/150 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P V +++ +++  A  G    V+   LFD+++                PD   
Sbjct: 316 MAMKGQNPDVFSYNIMLNGYATKG--CLVDMTDLFDLMLG-----------DGIAPDFYT 362

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           +N  + A AN G   K + +F++M + G KPDV+TY  +I    R  +    +    +++
Sbjct: 363 FNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 422

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETI 150
           + G+      +  L+  +   G L   + I
Sbjct: 423 DQGVAPDKYAYNCLIQGFCTHGILLKTQGI 452


>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Brachypodium distachyon]
          Length = 864

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 220/492 (44%), Gaps = 48/492 (9%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M   G  P+   ++ +V        DG  +  K FDV  +RV  F    +++   PD   
Sbjct: 340 MAHEGVQPNSYTYNIIV--------DGLCKEGKAFDV--RRVEDFVRSGVMT---PDVVT 386

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y ++L+A  + G      ++ D+M + G  P++ TYNV+++   +A R   +  +LER+ 
Sbjct: 387 YTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMS 446

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
           E G +L   +   ++        LE+A  IV  M  EGR      +R L     S  +  
Sbjct: 447 EKGYSLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNEGRL----ALRRLGNSFVSLVS-- 500

Query: 180 DDDDDDEVFEKLLPNSINPSS-----------------EPPLLPKTFAPNSRIYTTLMKG 222
               D  + +  LP+ I  S+                    ++ K  +P+S IY T + G
Sbjct: 501 ----DSSISKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHG 556

Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
           Y   G+ S  +++L   R  E  + +P   +Y  ++    +    D   ++++EM   G+
Sbjct: 557 YCMHGKTSLAIKVL---RDMEKRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGI 613

Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
            +N +TYN L+K +C +  ++KA  LL EM  + +I P+V S+ +LI  F    D + A 
Sbjct: 614 SSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQN-EIVPNVTSFGLLIKAFCKTADFSAAQ 672

Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
             F ++        ++ Y  +    +  ++   A  + +  L + R+ +    +  ++ G
Sbjct: 673 RVF-DVALSTCGQKEVLYCLMCTELSTYARWIEAKNILETAL-EMRISIQSFPYKRIIAG 730

Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
            C +   + A  +++     G+  + AT+  + + +S + K  +A +L +++ E  +   
Sbjct: 731 LCDVSEADHAHSLLKLFIAKGYSFDPATFMPVIDALSESGKKHDADMLSEKMMEIADC-N 789

Query: 463 EGVNADSDLPPP 474
           +G +A S +  P
Sbjct: 790 DGQSAVSGVVTP 801



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 111/480 (23%), Positives = 203/480 (42%), Gaps = 49/480 (10%)

Query: 54  SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
           + P T  YN +L A     +      L+  +   GA PDV T N +++  + A R  L  
Sbjct: 104 AAPPTPVYNRLLLAALREDRLDLVEALYKDLLLAGATPDVFTRNALLEALSAAGRMDLAR 163

Query: 114 FVLERI-----LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
            V + +        GI         L   Y   G    A  ++ AM E    VC  +   
Sbjct: 164 RVFDAMPARNEFSSGI---------LARGYCRAGRSADALAVLDAMPEMNLVVCNTV--- 211

Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
            +  +    EG  D+ + + +++    +             APN   +   +      GR
Sbjct: 212 -VAGFC--REGRVDEAERLVDRMRAQGL-------------APNVVTFNGRISALCKAGR 255

Query: 229 VSDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
           V +  R+   M+   E     PD VT+  ++S    AG +D A  VL ++ R G    ++
Sbjct: 256 VLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEA-TVLVDIMRCGGFLRKV 314

Query: 288 -TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            +YN  L G  +  ++ +A+ELL EMA +  ++P+  +YNI++DG      +       +
Sbjct: 315 ESYNRWLSGLVKNGRVGEAQELLSEMAHEG-VQPNSYTYNIIVDGLCKEGKAFDVRRVED 373

Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
            +R+  + P  ++YT+L+ A+        AN++ DEM +      ++  +N+L++   + 
Sbjct: 374 FVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKG-CAPNLFTYNVLLQSLLKA 432

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL----LLWKEIKERCEVKK 462
           G   E +R++ERM E G+  + A+   + +G+    K   A+     +W E   R  +++
Sbjct: 433 GRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNE--GRLALRR 490

Query: 463 EG-----VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
            G     + +DS +     PD      L +   +   F +A + +  M    I P+   Y
Sbjct: 491 LGNSFVSLVSDSSISKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIY 550



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 176/398 (44%), Gaps = 72/398 (18%)

Query: 50  IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQM---HEFGAKPDVLTYNVMIKLCARA 106
           +++ + PD    NA+L A +  G+     ++FD M   +EF +        ++ +   RA
Sbjct: 135 LLAGATPDVFTRNALLEALSAAGRMDLARRVFDAMPARNEFSS-------GILARGYCRA 187

Query: 107 SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR----------- 155
            R    + VL+ + EM + +C T    +VA +   G ++ AE +V  MR           
Sbjct: 188 GRSADALAVLDAMPEMNLVVCNT----VVAGFCREGRVDEAERLVDRMRAQGLAPNVVTF 243

Query: 156 EGR-RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
            GR   +CK  R L  E Y   N     D  E +E+ LP                 P+  
Sbjct: 244 NGRISALCKAGRVL--EAYRIFN-----DMQEAWEQGLPR----------------PDQV 280

Query: 215 IYTTLMKGYMNEGRVS------DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
            +  ++ G+ + G V       D +R  G +R+ E         +Y   +S LVK G + 
Sbjct: 281 TFDVMLSGFCDAGMVDEATVLVDIMRCGGFLRKVE---------SYNRWLSGLVKNGRVG 331

Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQ---LQIDKAKELLREMADDAKIEPDVVSY 325
            A+++L+EM   GV  N  TYNI++ G C++     + + ++ +R       + PDVV+Y
Sbjct: 332 EAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVRS----GVMTPDVVTY 387

Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
             L+  +    ++  A    +EM  +G AP   +Y  L+++   + +     ++ + M  
Sbjct: 388 TSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERM-S 446

Query: 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423
           +    +D  + N++++G CR   +E A  I++ M   G
Sbjct: 447 EKGYSLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNEG 484


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 213/493 (43%), Gaps = 41/493 (8%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK-HLLV 113
           +PD  AY +++ AC + G+ ++ + +F +M E G KP ++TYNV++ +  +     + + 
Sbjct: 30  EPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIT 89

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            + E +   GI     T+ +L+         E A  + + M+       K+     L+ Y
Sbjct: 90  GLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVY 149

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                G      E  E L    +N  S          P+   Y +L+  Y  +G + + +
Sbjct: 150 -----GKSRRIKEAIEVLREMEVNGCS----------PSIVTYNSLISAYARDGLLEEAM 194

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +   M  +       D  TYT ++S  V+ G  + A +V  EM   G   N  T+N L+
Sbjct: 195 ELKNQMVER---GIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALI 251

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
           K +  + +  +  ++  E+     + PD+V++N L+  F      +     F EM+  G 
Sbjct: 252 KMHGNRGKFAEMMKVFEEIKICCCV-PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGF 310

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
            P + +Y TL+ A++       A  ++  ML D  +  D+  +N ++    R GL E+++
Sbjct: 311 VPERDTYNTLISAYSRCGSFDQAMAMYKRML-DTGITPDLSTYNAVLAALARGGLWEQSE 369

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI------------------K 455
           +I+  M++    PN  T+ SL +  +  ++ G  L L +EI                   
Sbjct: 370 KILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVN 429

Query: 456 ERCEVKKEGVNADSDLP-PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
            +C++  E   A  +L      PD   L+A+  I  R     K  EI+  M+E G  P+ 
Sbjct: 430 SKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSL 489

Query: 515 TKYKKIYVEMHSR 527
             Y  + + MHS+
Sbjct: 490 ATYNSL-MYMHSQ 501



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 196/475 (41%), Gaps = 69/475 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   YN +L+      + K+ +++  +M   G  P ++TYN +I   AR       + +
Sbjct: 137 PDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMEL 196

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
             +++E GI L + T+ ++++ +V  G  E A  + + MR    + ++C     + +   
Sbjct: 197 KNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHG- 255

Query: 174 SSENEGDDDDDDEVFEKL-----LPNSINPSSEPPLLPKT-----------------FAP 211
              N G   +  +VFE++     +P+ +  ++   +  +                  F P
Sbjct: 256 ---NRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVP 312

Query: 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR 271
               Y TL+  Y   G     + M    +R  D    PD  TY  V++AL + G  +++ 
Sbjct: 313 ERDTYNTLISAYSRCGSFDQAMAMY---KRMLDTGITPDLSTYNAVLAALARGGLWEQSE 369

Query: 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI-- 329
           ++LAEM       N +T+  LL  Y    +I +   L  E+     IEP  V    L+  
Sbjct: 370 KILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGV-IEPHAVLLKTLVLV 428

Query: 330 -----------------------------DGFILIDDSAGALTFFNE----MRARGIAPT 356
                                        +  I I      +T  NE    M+  G  P+
Sbjct: 429 NSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPS 488

Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
             +Y +LM   + S   + + +V  E+L    +K DI+++N ++  YCR G ++EA  I 
Sbjct: 489 LATYNSLMYMHSQSENFERSEEVLKEILAKG-IKPDIISYNTVIFAYCRNGRMKEASHIF 547

Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSD 470
             M+E+G  P+V TY +     +      EA+ ++   IK  C+  +   N+  D
Sbjct: 548 SEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVID 602



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 113/483 (23%), Positives = 208/483 (43%), Gaps = 58/483 (12%)

Query: 4   SGYLPHVKAWSTVVSRLAASGDDGPVE-SVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
           +G  P +  +++++S   A   DG +E +++L + +V+R  K            D   Y 
Sbjct: 168 NGCSPSIVTYNSLIS---AYARDGLLEEAMELKNQMVERGIKL-----------DVFTYT 213

Query: 63  AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
           A+L+     GK +  +++F++M   G KP++ T+N +IK+     +   ++ V E   E+
Sbjct: 214 AMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFE---EI 270

Query: 123 GITLC---MTTFQSLVAAYVGFG-DLEIAETIVQAMREG---RRDVCKIIRELDLEDYSS 175
            I  C   + T+ +L+A +   G D E++    +  R G    RD    +    +  YS 
Sbjct: 271 KICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTL----ISAYS- 325

Query: 176 ENEGDDDDDDEVFEKLLPNSINP--SSEPPLLP------------KTFA--------PNS 213
              G  D    +++++L   I P  S+   +L             K  A        PN 
Sbjct: 326 -RCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNE 384

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             + +L+  Y N   +    RML            P  V   T+V    K   +  A + 
Sbjct: 385 LTHCSLLHAYANGKEIG---RMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERA 441

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
             E+ R G   +  T N ++  Y ++  + K  E+L  M +     P + +YN L+    
Sbjct: 442 FLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESG-FTPSLATYNSLMYMHS 500

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
             ++   +     E+ A+GI P  ISY T++ A+  + + K A+ +F EM R+  +  D+
Sbjct: 501 QSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEM-RESGLIPDV 559

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
           + +N  V  Y    + EEA  ++  M ++G  PN  TY S+ +G     +  +A+     
Sbjct: 560 ITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISS 619

Query: 454 IKE 456
           + E
Sbjct: 620 LHE 622



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 149/376 (39%), Gaps = 84/376 (22%)

Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTV---------------------------------RM 235
           F P+   YT+L+   ++ GR  + V                                 ++
Sbjct: 29  FEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKI 88

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
            G     ++    PD  TY T+++   +    + A  V  +M  +G   +++TYN LL  
Sbjct: 89  TGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDV 148

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           Y +  +I +A E+LREM  +    P +V+YN LI  +        A+   N+M  RGI  
Sbjct: 149 YGKSRRIKEAIEVLREMEVNG-CSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKL 207

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEM-----------------LRDPRVKV------- 391
              +YT ++  F  + + + A +VF+EM                 +   R K        
Sbjct: 208 DVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVF 267

Query: 392 ----------DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441
                     DIV WN L+  + + G+  E   + + MK  GF P   TY +L +  S  
Sbjct: 268 EEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRC 327

Query: 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEI 501
               +A+ ++K +             D+ + P L     +L ALA    R   + ++ +I
Sbjct: 328 GSFDQAMAMYKRM------------LDTGITPDLSTYNAVLAALA----RGGLWEQSEKI 371

Query: 502 VACMEEHGIPPNKTKY 517
           +A M++    PN+  +
Sbjct: 372 LAEMQDGMCKPNELTH 387



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 135/335 (40%), Gaps = 38/335 (11%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R G++P    ++T++S  +  G          FD  +   ++  D  I     PD + 
Sbjct: 305 MKRVGFVPERDTYNTLISAYSRCGS---------FDQAMAMYKRMLDTGIT----PDLST 351

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YNAVL A A  G  ++  ++  +M +   KP+ LT+  ++   A       ++ + E I 
Sbjct: 352 YNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEIC 411

Query: 121 EMGITLCMTTFQSLVA-------------AYV-----GFG-DLEIAETIVQAMREGRRDV 161
              I       ++LV              A++     GF  DL     ++ A+   R+ V
Sbjct: 412 SGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMI-AIYGRRQMV 470

Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPNSRIYTTL 219
            K    L+    S         +  ++      +   S E    +L K   P+   Y T+
Sbjct: 471 TKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTV 530

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           +  Y   GR+ +   +   MR   ++   PD +TY T V++       + A  V+  M +
Sbjct: 531 IFAYCRNGRMKEASHIFSEMR---ESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIK 587

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
            G   N+ TYN ++ GYC+  + D A + +  + +
Sbjct: 588 HGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHE 622



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M  SG+ P +  +++++   + S +    E V L +++ K +            KPD  +
Sbjct: 480 MKESGFTPSLATYNSLMYMHSQSENFERSEEV-LKEILAKGI------------KPDIIS 526

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN V+ A    G+ K+   +F +M E G  PDV+TYN  +   A  S     + V+  ++
Sbjct: 527 YNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMI 586

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-----GRRDVCKIIREL 168
           + G      T+ S++  Y      + A   + ++ E      R D C+++  L
Sbjct: 587 KHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHELDPHISREDECRLLERL 639



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 80/195 (41%), Gaps = 15/195 (7%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD +  NA++          K  ++ + M E G  P + TYN ++ + +++        V
Sbjct: 452 PDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEV 511

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ IL  GI   + ++ +++ AY   G ++ A  I   MRE       I     +  Y++
Sbjct: 512 LKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAA 571

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
           ++  ++  D   +               ++     PN   Y +++ GY    R  D ++ 
Sbjct: 572 DSMFEEAIDVVCY---------------MIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKF 616

Query: 236 LGAMRRQEDNASHPD 250
           + ++   + + S  D
Sbjct: 617 ISSLHELDPHISRED 631


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 157/360 (43%), Gaps = 39/360 (10%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           +L +   P+   YT L++           +++L  MR   D    PD VTY  VV+ + +
Sbjct: 186 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR---DKGCTPDIVTYNVVVNGICQ 242

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
            G +D A + L  +   G   N ++YNI+LKG C   + + A+EL+ EM       P+VV
Sbjct: 243 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG-CPPNVV 301

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
           ++N+LI           AL    ++   G +P  +SY  L+ AF    +   A    D M
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 361

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +       DIV++N L+   CR G V+ A  ++ ++K+ G  P + +Y ++ +G++ A K
Sbjct: 362 VSRG-CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGK 420

Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
             EAL L  E+  +                 L+PD      +A    R      A+    
Sbjct: 421 TKEALELLNEMVSK----------------GLQPDIITYSTIAAGLCREDRIEDAIRAFG 464

Query: 504 CMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLG---LPN 560
            +++ GI PN   Y  I + +                +RRE   A + F + +G   +PN
Sbjct: 465 KVQDMGIRPNTVLYNAIILGLC---------------KRRETHSAIDLFAYMIGNGCMPN 509



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 175/396 (44%), Gaps = 57/396 (14%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFV 115
           D    + ++      G+    L + D+M      PDV+TY ++++  C R+  K  +   
Sbjct: 159 DAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL- 217

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ + + G T  + T+  +V                         +C+            
Sbjct: 218 LDEMRDKGCTPDIVTYNVVV-----------------------NGICQ------------ 242

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             EG  DD  E F K LP+                PN+  Y  ++KG     R  D   +
Sbjct: 243 --EGRVDDAIE-FLKNLPS------------YGCEPNTVSYNIVLKGLCTAERWEDAEEL 287

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
           +G M ++      P+ VT+  ++S L + G ++ A +VL ++ + G   N ++YN LL  
Sbjct: 288 MGEMGQK---GCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHA 344

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           +C+Q ++DKA   L  M       PD+VSYN L+       +   A+   ++++ +G AP
Sbjct: 345 FCKQKKMDKAMAFLDLMVSRG-CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 403

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             ISY T++     + + K A ++ +EM+    ++ DI+ ++ +  G CR   +E+A R 
Sbjct: 404 VLISYNTVIDGLTKAGKTKEALELLNEMV-SKGLQPDIITYSTIAAGLCREDRIEDAIRA 462

Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
             ++++ G  PN   Y ++  G+   R+   A+ L+
Sbjct: 463 FGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLF 498



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 33/301 (10%)

Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
           ++  +  G + + +R++G+ RR       PD  T   ++  L  +G    AR+VLA    
Sbjct: 74  LRSLVRRGELDEALRLVGSARR-------PDAGTCAALIKKLSASGRTAEARRVLA---- 122

Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339
                + + YN ++ GYC   Q+D A+    E A    +E D  + + LI G      +A
Sbjct: 123 -ACGPDVMAYNAMMAGYCGAGQVDAARRWCAERA----VERDAYTCDTLIRGLCGRGRTA 177

Query: 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399
            AL   +EM  R   P  ++YT L++A    S  K A K+ DEM RD     DIV +N++
Sbjct: 178 NALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM-RDKGCTPDIVTYNVV 236

Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459
           V G C+ G V++A   ++ +   G  PN  +Y  +  G+  A +       W++ +E   
Sbjct: 237 VNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER-------WEDAEEL-- 287

Query: 460 VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519
               G       PP +     L+  L     R      ALE++  + ++G  PN   Y  
Sbjct: 288 ---MGEMGQKGCPPNVVTFNMLISFLC----RKGLVEPALEVLEQIPKYGCSPNSLSYNP 340

Query: 520 I 520
           +
Sbjct: 341 L 341



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 151/361 (41%), Gaps = 29/361 (8%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD   Y  +L A       K+ ++L D+M + G  PD++TYNV++    +  R    +  
Sbjct: 193 PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 252

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
           L+ +   G      ++  ++         E AE ++  M  G++     +   ++     
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM--GQKGCPPNVVTFNMLISFL 310

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEP--PLL--------------------PKTFAPNS 213
             +G  +   EV E++     +P+S    PLL                     +   P+ 
Sbjct: 311 CRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDI 370

Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
             Y TL+      G V   V +L  ++   D    P  ++Y TV+  L KAG    A ++
Sbjct: 371 VSYNTLLTALCRSGEVDVAVELLHQLK---DKGCAPVLISYNTVIDGLTKAGKTKEALEL 427

Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
           L EM   G+  + ITY+ +  G C++ +I+ A     ++  D  I P+ V YN +I G  
Sbjct: 428 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV-QDMGIRPNTVLYNAIILGLC 486

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML-RDPRVKVD 392
              ++  A+  F  M   G  P + +YT L++  A     K A  + DE+  R   + +D
Sbjct: 487 KRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGEEILLD 546

Query: 393 I 393
           +
Sbjct: 547 V 547



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 118/313 (37%), Gaps = 66/313 (21%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M + G  P+V  ++ ++S L   G   P   V      ++++ K+          P++ +
Sbjct: 291 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEV------LEQIPKYG-------CSPNSLS 337

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           YN +L+A     K  K +   D M   G  PD+++YN ++    R+    + V +L ++ 
Sbjct: 338 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 397

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
           + G    + ++ +++      G  + A  ++  M                          
Sbjct: 398 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNEM-------------------------- 431

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
                                   + K   P+   Y+T+  G   E R+ D +R  G   
Sbjct: 432 ------------------------VSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG--- 464

Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
           + +D    P+ V Y  ++  L K      A  + A M   G   N  TY IL++G   + 
Sbjct: 465 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 524

Query: 301 QIDKAKELLREMA 313
            I +A++LL E+ 
Sbjct: 525 LIKEARDLLDELC 537


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 198/451 (43%), Gaps = 21/451 (4%)

Query: 17  VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKK 76
            +RL  +  D  ++S  L D+   + ++ S  + V    PD   YN +++    LG   +
Sbjct: 228 TTRLYNAVMDALIKSNSL-DLAYLKFQQMSSHNCV----PDRFTYNILIHGVCRLGVVDE 282

Query: 77  FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136
            L+L  QM   G  P+V TY ++I     A R      VL+ + E  +     T +SLV 
Sbjct: 283 ALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVH 342

Query: 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD----DDDDEVFE--- 189
                   + A  ++    E ++ + +++ +  L   S+ +   +          F    
Sbjct: 343 GVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFXPSSSTFNITL 402

Query: 190 ----KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
               K L   +  +     +     P    Y TL++     G++    R    M R  ++
Sbjct: 403 ACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRY---MDRLIND 459

Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
               +  +Y  V+  L K  SMDRA ++  ++   G+  N +TYN L+ G+C+   +DKA
Sbjct: 460 GLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKA 519

Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           +ELL EM  +++  PD+ ++N LIDG         A   F EM    + P  I+Y  L+ 
Sbjct: 520 QELL-EMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILIC 578

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
           +F        +  +  +M +   ++ D  ++N L++GY      ++A+++ + M   G  
Sbjct: 579 SFCAIGDVSRSTHLLRQM-KLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQ 637

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKE 456
           P+  TYG+L   +  + +  +A  ++  +KE
Sbjct: 638 PDNYTYGALIKSLCKSGRHDKAREIFLSMKE 668



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 144/373 (38%), Gaps = 84/373 (22%)

Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
            P+   Y  L+ G    G V + +R+   M++ E     P+  TYT ++     A     
Sbjct: 261 VPDRFTYNILIHGVCRLGVVDEALRL---MKQMEGLGYFPNVFTYTILIDGFFNAKRAGE 317

Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLRE------------------ 311
             +VL  M    V  N  T   L+ G  + +  DKA ELL E                  
Sbjct: 318 TFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILY 377

Query: 312 ------MADDAKI-EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
                 MA +A +  P   ++NI +   +   D     T F+     G+ P   +Y TL+
Sbjct: 378 CLSNNSMASEAVMFXPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLI 437

Query: 365 KAFALSSQPKLANKVFD-------------------------------EMLRDPR---VK 390
           +A   + + ++ N+  D                               EM RD     + 
Sbjct: 438 EALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGIS 497

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
            +IV +N L+ G+CR G +++A+ ++E + E+ F P++ T+ SL +G+  A K   A   
Sbjct: 498 PNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGC 557

Query: 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELL---DALADICVRAAFFRKALEIVACMEE 507
           + E+ E             D+PP +     L+    A+ D+       R+       M+ 
Sbjct: 558 FTEMVEW------------DVPPNVITYNILICSFCAIGDVSRSTHLLRQ-------MKL 598

Query: 508 HGIPPNKTKYKKI 520
           HGI P+   +  +
Sbjct: 599 HGIQPDTFSFNAL 611



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
           F ++   G+ PT   Y  +M A   S+   LA   F +M     V  D   +N+L+ G C
Sbjct: 217 FGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVP-DRFTYNILIHGVC 275

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG 464
           R+G+V+EA R++++M+  G++PNV TY  L +G   A++ GE   + + +KER  V  E 
Sbjct: 276 RLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEA 335

Query: 465 V 465
            
Sbjct: 336 T 336



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
           +P    Y  V+ AL+K+ S+D A     +M+      +R TYNIL+ G C+   +D+A  
Sbjct: 226 NPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALR 285

Query: 308 LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
           L+++M +     P+V +Y ILIDGF     +         M+ R + P + +  +L+   
Sbjct: 286 LMKQM-EGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGV 344

Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
                P  A ++  E +   +    +V  N+L   YC
Sbjct: 345 FRCIAPDKAFELLLEFVERKQGITQLVCDNIL---YC 378



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 119/286 (41%), Gaps = 23/286 (8%)

Query: 47  DPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA 106
           D  + S  KP  + Y  ++ A    GK +   +  D++   G   ++ +YN++I    + 
Sbjct: 419 DNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKG 478

Query: 107 SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKI 164
                   +   +   GI+  + T+ +L+  +   G+++ A+ +++ + E R   D+   
Sbjct: 479 KSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTF 538

Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
              +D    + ++E       E+ E  +P                 PN   Y  L+  + 
Sbjct: 539 NSLIDGLCQAHKHENAFGCFTEMVEWDVP-----------------PNVITYNILICSFC 581

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
             G VS +  +L   R+ + +   PD  ++  ++          +A ++   M R+G+  
Sbjct: 582 AIGDVSRSTHLL---RQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQP 638

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
           +  TY  L+K  C+  + DKA+E+   M ++    PD  + ++  D
Sbjct: 639 DNYTYGALIKSLCKSGRHDKAREIFLSMKENG-CTPDSYTCSLFSD 683


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 180/398 (45%), Gaps = 63/398 (15%)

Query: 72  GKPKKFLQLFDQMHEFGAKP-DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
           G+ +  ++L  +M + G KP D L      +LC +  R    V +  ++LE G+ + + T
Sbjct: 421 GRLESVVRLISEMVKRGMKPNDALMTACTKQLC-QGRRHQEAVGIWLKMLEKGLCINIAT 479

Query: 131 FQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFE 189
             +L+       +++ A  +++ M  +G         ELD   Y+   +G   D  ++ E
Sbjct: 480 SNALIHGLCEGKNMKGATEVLRTMVNKGM--------ELDNITYNIMIQGCCKDS-KIEE 530

Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
            L            ++ K F P++ ++ +++  Y + G++ + + +LG M+ +      P
Sbjct: 531 AL-------KLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIE---GVQP 580

Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY------------- 296
           D V+Y T++    KA  + +A + L E+   G+  N + YN L+ GY             
Sbjct: 581 DVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVL 640

Query: 297 ----------------------CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
                                 C    +D+AK +  E +    IE  VV Y I+I G   
Sbjct: 641 DTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMF-EQSRKNSIEVGVVGYTIMIQGLCK 699

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
           I     A+ +F EMR+R I P KI+YTTLM A+  S   + A+K+FDEM+    V  D V
Sbjct: 700 IGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVP-DNV 758

Query: 395 AWNMLVEGYCRM----GLVEEAKRIIERMKENGFYPNV 428
           ++N LV G+ ++      +E+A  I   M +N    NV
Sbjct: 759 SYNTLVTGFSQVDSLDKAIEKAAEISSIMTQNDCLDNV 796



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 182/407 (44%), Gaps = 40/407 (9%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P+    N +++     G   + ++LFD+M     K   +TYN++ +   +         +
Sbjct: 334 PNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERI 393

Query: 116 LERILEMGITLCMTTFQSLVAAYVG-FGDLE-----IAETIVQAMREGRRDVCKIIRELD 169
           LE +L  G+T+    F S+VA  +   G LE     I+E + + M+     +    ++L 
Sbjct: 394 LEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLC 453

Query: 170 LEDYSSENEGDDDDDDEVFEKLLPNS--INPSSEPPLLP--------------------K 207
                 E  G       ++ K+L     IN ++   L+                     K
Sbjct: 454 QGRRHQEAVG-------IWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNK 506

Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
               ++  Y  +++G   + ++ + +++   M R+      PD   + +++ A    G M
Sbjct: 507 GMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRK---GFKPDAYMFNSIIHAYCDLGKM 563

Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
           + A  +L +M   GV  + ++Y  ++ GYC+   I KA E L E+     ++P+ V YN 
Sbjct: 564 EEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELM-ACGLKPNAVIYNA 622

Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
           LI G+    + +GA+   + M + GI PT ++Y +LM     +     A  +F++  R  
Sbjct: 623 LIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQS-RKN 681

Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
            ++V +V + ++++G C++G ++EA    E M+     PN  TY +L
Sbjct: 682 SIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTL 728



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 173/396 (43%), Gaps = 52/396 (13%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESV-KLFDVVVKRVRKFSDPDIVSDSKP--- 56
           ML +G   H   +++VV+ L      G +ESV +L   +VKR  K +D  + + +K    
Sbjct: 397 MLSTGMTIHSGLFNSVVAGLLQR--TGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQ 454

Query: 57  ---------------------DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLT 95
                                + A  NA+++        K   ++   M   G + D +T
Sbjct: 455 GRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNIT 514

Query: 96  YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
           YN+MI+ C + S+    + + + ++  G       F S++ AY   G +E A  ++  M+
Sbjct: 515 YNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMK 574

Query: 156 -EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--PPLLPKTFAPN 212
            EG +         D+  Y +  +G     D          I  ++E    L+     PN
Sbjct: 575 IEGVQP--------DVVSYGTIIDGYCKAKD----------IQKANEYLNELMACGLKPN 616

Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
           + IY  L+ GY   G +S  + +L  M   E     P +VTY +++  +  AG +D A+ 
Sbjct: 617 AVIYNALIGGYGRNGNISGAIGVLDTM---ESIGIQPTNVTYCSLMHWMCHAGLVDEAKT 673

Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
           +  +  +  +    + Y I+++G C+  ++D+A     EM   + I P+ ++Y  L+  +
Sbjct: 674 MFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRS-IPPNKITYTTLMYAY 732

Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
               ++  A   F+EM + GI P  +SY TL+  F+
Sbjct: 733 CKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFS 768



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 123/566 (21%), Positives = 230/566 (40%), Gaps = 81/566 (14%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFD----------------VVVKRVRKFSDPD-- 49
           P VK  + ++  LA +G+ G   + K+FD                 ++K + K    D  
Sbjct: 191 PSVKTCNALLEALARTGNLGA--TCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDG 248

Query: 50  --IVSD-------SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
             I+SD              YN +++A    G+  + ++L  +M E    P ++T+ ++I
Sbjct: 249 FKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILI 308

Query: 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMR 155
               R+ R   +  +L  +  +GIT        L+  +   G    A     E + + M+
Sbjct: 309 NGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMK 368

Query: 156 EGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE------PPLLPKTF 209
                   I R L         EG+ +  + + E++L   +   S         LL +T 
Sbjct: 369 STAVTYNLIARALC-------KEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTG 421

Query: 210 APNS--RIYTTLMKGYM--NEGRVSDTVRMLGAMRRQEDNAS----------HPDHVTYT 255
              S  R+ + ++K  M  N+  ++   + L   RR ++               +  T  
Sbjct: 422 RLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSN 481

Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
            ++  L +  +M  A +VL  M   G+  + ITYNI+++G C+  +I++A +L  +M   
Sbjct: 482 ALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRK 541

Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375
              +PD   +N +I  +  +     AL    +M+  G+ P  +SY T++  +  +   + 
Sbjct: 542 G-FKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQK 600

Query: 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
           AN+  +E++    +K + V +N L+ GY R G +  A  +++ M+  G  P   TY SL 
Sbjct: 601 ANEYLNELMA-CGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLM 659

Query: 436 NGISLARKPGEALLLWKEI-KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
           + +  A    EA  ++++  K   EV   G                ++  L  I      
Sbjct: 660 HWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTI-------------MIQGLCKI----GK 702

Query: 495 FRKALEIVACMEEHGIPPNKTKYKKI 520
             +A+     M    IPPNK  Y  +
Sbjct: 703 MDEAMNYFEEMRSRSIPPNKITYTTL 728



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 18/187 (9%)

Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKISYTTLMKAFALSSQPKL 375
           +  P V + N L++      +       F+EMR  + + P   SYT+++KA     +   
Sbjct: 188 RASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDD 247

Query: 376 ANKVFDEMLRDP-RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
             K+  +++    +     V +N+L++  C+ G V+EA R+  RM+E+   P++ T+G L
Sbjct: 248 GFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGIL 307

Query: 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494
            NG+  + + GE   L +E+        EG+         + P+E + + L D   R   
Sbjct: 308 INGLKRSDRFGEVGALLREM--------EGLG--------ITPNEVICNELIDWHCRKGH 351

Query: 495 FRKALEI 501
           F +A+ +
Sbjct: 352 FTEAIRL 358


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 172/383 (44%), Gaps = 20/383 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P   A NAVL+      + +   +LFD+M   G  P V+TYN +I  C           +
Sbjct: 141 PALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEM 200

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            ++++   I   + T+ S++      G +  AE +  AM+E      +    + +   S 
Sbjct: 201 WDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLM---SG 257

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
             +GDD +   V  + L NS               PN+ ++TTL+ G+    R S+   M
Sbjct: 258 HCQGDDVNSAFVLYQELLNS------------GLIPNAVVFTTLIDGFCKAKRFSEAKDM 305

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M R     + P    Y +++    ++G    A  +  EMTR+G+  +  T +I+++G
Sbjct: 306 FRDMPRFGVAPTVP---VYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRG 362

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
            C   QI  A   L  + +D  +  +  +YN LID +    +   AL     M   G+ P
Sbjct: 363 LCDGGQIQVAARFLEGVREDG-VNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEP 421

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             +SY++L+   +   + ++A  ++ EM+    ++ ++V +  L+ G+ + G ++ A R 
Sbjct: 422 NVVSYSSLIDGHSKLGKMQIAMAIYTEMVAK-GIEPNVVTYTALIHGHAKNGGIDAAFRF 480

Query: 416 IERMKENGFYPNVATYGSLANGI 438
            + M ENG  PN  T   L +G+
Sbjct: 481 HKEMIENGISPNAITVSVLVDGL 503



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 128/251 (50%), Gaps = 5/251 (1%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           ++ +   PN   YT+++     EG + D  R+  AM+   +    P+  TY  ++S   +
Sbjct: 204 MVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMK---EAGMRPNQYTYNVLMSGHCQ 260

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
              ++ A  +  E+   G+  N + +  L+ G+C+  +  +AK++ R+M     + P V 
Sbjct: 261 GDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFG-VAPTVP 319

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            YN L+DG     D+  AL+ + EM   G+ P + + + +++      Q ++A + F E 
Sbjct: 320 VYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAAR-FLEG 378

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           +R+  V ++  A+N L++ YCR G +EEA     RM E G  PNV +Y SL +G S   K
Sbjct: 379 VREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGK 438

Query: 444 PGEALLLWKEI 454
              A+ ++ E+
Sbjct: 439 MQIAMAIYTEM 449



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 188/487 (38%), Gaps = 93/487 (19%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           MLR G +P V  ++T+++     G              V + ++  D  +     P+   
Sbjct: 169 MLRRGMVPSVVTYNTLINACRYQG-------------AVAKAQEMWDQMVARQIDPNVIT 215

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y +++      G      +LFD M E G +P+  TYNV++    +    +    + + +L
Sbjct: 216 YTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELL 275

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
             G+      F +L+  +                       CK  R  + +D   +    
Sbjct: 276 NSGLIPNAVVFTTLIDGF-----------------------CKAKRFSEAKDMFRD---- 308

Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPK-TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
                                   +P+   AP   +Y +LM G    G   + + +   M
Sbjct: 309 ------------------------MPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEM 344

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
            R       PD  T + VV  L   G +  A + L  +   GV  N   YN L+  YC+ 
Sbjct: 345 TRL---GLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRN 401

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
             +++A      M  +  +EP+VVSY+ LIDG   +     A+  + EM A+GI P  ++
Sbjct: 402 GNLEEALATCTRMT-EVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVT 460

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER- 418
           YT L+   A +     A +   EM+ +  +  + +  ++LV+G CR   V++A R +   
Sbjct: 461 YTALIHGHAKNGGIDAAFRFHKEMIEN-GISPNAITVSVLVDGLCRENRVQDAVRFVMEH 519

Query: 419 ----------------MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462
                            +E    PN A Y +L  G+ L  +  EA  L+  +      +K
Sbjct: 520 SGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYM------RK 573

Query: 463 EGVNADS 469
            G+ +DS
Sbjct: 574 SGMISDS 580



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 17/201 (8%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P + + N ++DG +    S  A   F+EM  RG+ P+ ++Y TL+ A         A ++
Sbjct: 141 PALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEM 200

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           +D+M+   ++  +++ +  ++   C  G + +A+R+ + MKE G  PN  TY  L +G  
Sbjct: 201 WDQMVAR-QIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHC 259

Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499
                  A +L++E+                L   L P+  +   L D   +A  F +A 
Sbjct: 260 QGDDVNSAFVLYQEL----------------LNSGLIPNAVVFTTLIDGFCKAKRFSEAK 303

Query: 500 EIVACMEEHGIPPNKTKYKKI 520
           ++   M   G+ P    Y  +
Sbjct: 304 DMFRDMPRFGVAPTVPVYNSL 324



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 146/381 (38%), Gaps = 63/381 (16%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDP-DIVSD-----S 54
           +L SG +P+   ++T++        DG             + ++FS+  D+  D      
Sbjct: 274 LLNSGLIPNAVVFTTLI--------DG-----------FCKAKRFSEAKDMFRDMPRFGV 314

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
            P    YN++++     G  ++ L L+ +M   G  PD  T +++++      +  +   
Sbjct: 315 APTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAAR 374

Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
            LE + E G+ L    + +L+  Y   G+LE A      M E       +  E ++  YS
Sbjct: 375 FLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTE-------VGVEPNVVSYS 427

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
           S  +G          KL    I  +    ++ K   PN   YT L+ G+   G +    R
Sbjct: 428 SLIDGHS--------KLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFR 479

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG------------- 281
                +   +N   P+ +T + +V  L +   +  A + + E + I              
Sbjct: 480 F---HKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTT 536

Query: 282 -----VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
                +P N   Y  L+ G     Q  +A +L   M     I  D  +Y +LI G  ++ 
Sbjct: 537 EEEPLIP-NSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMIS-DSFTYTLLIRGQCMLG 594

Query: 337 DSAGALTFFNEMRARGIAPTK 357
               A+  + +M   G+ P +
Sbjct: 595 YVLNAMMLYADMMKIGVKPMR 615


>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
 gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
          Length = 519

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 176/403 (43%), Gaps = 22/403 (5%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PD  AYN  LN      +    L +   M E G +PD++TY ++I    RA R    V +
Sbjct: 112 PDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEI 171

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA-ETIVQAMREGRRDVCKIIRELDLEDYS 174
              ++  G +      ++LV      G +++A E  V AMR GR    K I    +  + 
Sbjct: 172 WRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTVGAMR-GRIKFSKSIYNSLINGFC 230

Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
               G  D    +   +  N      EP L+          Y  L+    +E  + +   
Sbjct: 231 --QAGWIDKAQSIISFMRRNG----CEPDLVT---------YNVLLNYCCDELLLEEAEN 275

Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
               M++ E +   PD  +Y  ++  L KA  +D+A  ++          + ++YN ++K
Sbjct: 276 ---LMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIK 332

Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
             C      +A +L  EM     I PDVV++ ILI  F+    S  A    ++M   G+ 
Sbjct: 333 ALCTASHTKRAYKLFEEMGGKG-ITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLL 391

Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
           P ++ YTT++     + +  +A+ VF +M+ +  +  D+V++N L+ G CR   V EA  
Sbjct: 392 PDRVLYTTIVDHLCKTGKMGMAHSVFCDMV-ESGITPDVVSYNALINGLCRASRVSEAMH 450

Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
           + E M   G  P+  T+  +  G+   +K   A  +W ++ E+
Sbjct: 451 LYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEK 493



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 227/485 (46%), Gaps = 49/485 (10%)

Query: 60  AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
           AY A +++    G   + L+ FD+M +   +   + YN  I +  R SR  L     +R+
Sbjct: 11  AYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRM 70

Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-DVCKIIRELDLEDYSSEN 177
           +  G +L   T+   ++      +  + E +++ M R G   D+      L+L     EN
Sbjct: 71  IPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNL--LCCEN 128

Query: 178 EGD------------DDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRIYT 217
           + D              + D V   ++ N +  +            ++ K F+P+ +   
Sbjct: 129 QLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACR 188

Query: 218 TLMKGYMNEGRVSDTVRM-LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
            L+ G  ++G+V     + +GAMR +   +       Y ++++   +AG +D+A+ +++ 
Sbjct: 189 ALVLGLCHDGKVDLAYELTVGAMRGRIKFSKS----IYNSLINGFCQAGWIDKAQSIISF 244

Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
           M R G   + +TYN+LL   C +L +++A+ L+++M + + +EPDV SYN L+ G    +
Sbjct: 245 MRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKM-ERSGVEPDVYSYNELLKGLCKAN 303

Query: 337 DSAGA-LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
               A +   N+M A+G+    +SY T++KA   +S  K A K+F+EM     +  D+V 
Sbjct: 304 RLDKAYMMMVNKMEAKGLCDV-VSYNTIIKALCTASHTKRAYKLFEEM-GGKGITPDVVT 361

Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
           + +L++ + R G    AK+++++M   G  P+   Y ++ + +    K G A  ++    
Sbjct: 362 FTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVF---- 417

Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
             C++ + G+           PD    +AL +   RA+   +A+ +   M   G  P++ 
Sbjct: 418 --CDMVESGIT----------PDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEV 465

Query: 516 KYKKI 520
            +K I
Sbjct: 466 TFKLI 470



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 179/439 (40%), Gaps = 35/439 (7%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M R GY+P + A++  ++ L                VV   V K  +PDIV+        
Sbjct: 105 MDRLGYVPDIWAYNIYLNLLCCENQLDVA-----LGVVQTMVEKGREPDIVT-------- 151

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  V+N     G+    ++++  M   G  PD      ++       +  L   +    +
Sbjct: 152 YTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTVGAM 211

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-ENEG 179
              I    + + SL+  +   G ++ A++I+  M   RR+ C    E DL  Y+   N  
Sbjct: 212 RGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFM---RRNGC----EPDLVTYNVLLNYC 264

Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
            D+   E  E L+        EP +           Y  L+KG     R+     M   M
Sbjct: 265 CDELLLEEAENLMKKMERSGVEPDVYS---------YNELLKGLCKANRLDKAYMM---M 312

Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
             + +     D V+Y T++ AL  A    RA ++  EM   G+  + +T+ IL+K + ++
Sbjct: 313 VNKMEAKGLCDVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLRE 372

Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
              + AK+LL +M     + PD V Y  ++D          A + F +M   GI P  +S
Sbjct: 373 GSSNIAKKLLDQMT-GLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVS 431

Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
           Y  L+     +S+   A  ++++M        D V + +++ G      +  A R+ ++M
Sbjct: 432 YNALINGLCRASRVSEAMHLYEDMHTGGPCP-DEVTFKLIIGGLIWEKKLSVACRVWDQM 490

Query: 420 KENGFYPNVATYGSLANGI 438
            E GF  + A   +L N I
Sbjct: 491 MEKGFTLDGAVSETLVNAI 509



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 70/254 (27%)

Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTR-------------IGV---------------- 282
           + Y   +S+ VKAG +D+A +   EMT+             IGV                
Sbjct: 10  LAYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDR 69

Query: 283 ------PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
                   N  TY+  + G C+       ++LL +M D     PD+ +YNI ++     +
Sbjct: 70  MIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDM-DRLGYVPDIWAYNIYLNLLCCEN 128

Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------- 386
               AL     M  +G  P  ++YT ++     + +   A +++  M+R           
Sbjct: 129 QLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACR 188

Query: 387 ------------------------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
                                    R+K     +N L+ G+C+ G +++A+ II  M+ N
Sbjct: 189 ALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRN 248

Query: 423 GFYPNVATYGSLAN 436
           G  P++ TY  L N
Sbjct: 249 GCEPDLVTYNVLLN 262


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 175/383 (45%), Gaps = 51/383 (13%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           P  + +  +L + A   +    L    ++H  G KPD+ TYNV+I   ++    H L   
Sbjct: 61  PPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQLGHTHFL--- 117

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            +R+          ++++L+      G+   A  +++ + E      KI+ + D+  Y++
Sbjct: 118 -DRV----------SYETLINGLCKVGETRAALRLLKEVNE------KIV-QYDVVMYTA 159

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
              G   D      KL+ ++ +  +E  ++ K  +P+   Y  ++ G+   GR+ D + +
Sbjct: 160 IINGLCKD------KLVDDAFDLYTE--MVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGL 211

Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
              M+ +   A   D  T+ T+VSA  K G++   + V+A M + GV  + ITYN L+ G
Sbjct: 212 FNDMKLENVEA---DEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDG 268

Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
           YC   ++DKAK +   M                      +  +   +  F EM  + I P
Sbjct: 269 YCLVKEVDKAKNIFNTMVQRG------------------VTANVRTMNLFQEMHCKEIIP 310

Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
             I+Y++L+  F  S +   A ++ DEM  D     +I+ +N ++   C++  VE+   +
Sbjct: 311 DTIAYSSLIDGFCKSGRIPQALELVDEM-HDRGQPPNIITYNSILYALCKIHHVEKTIAL 369

Query: 416 IERMKENGFYPNVATYGSLANGI 438
           + ++K  G  P+  TY  L NG+
Sbjct: 370 LRKIKVKGIQPDAYTYTILTNGL 392



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 36/283 (12%)

Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
           PD  TY  +++   + G                   +R++Y  L+ G C+  +   A  L
Sbjct: 96  PDLFTYNVLINCFSQLGHTHFL--------------DRVSYETLINGLCKVGETRAALRL 141

Query: 309 LREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
           L+E+ ++  ++ DVV Y  +I+G     L+DD   A   + EM A+ ++P   +Y  ++ 
Sbjct: 142 LKEV-NEKIVQYDVVMYTAIINGLCKDKLVDD---AFDLYTEMVAKRVSPDVFTYNAMIY 197

Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
            F +  + K A  +F++M +   V+ D   +N LV  +C+ G V E K ++  M + G  
Sbjct: 198 GFCVVGRLKDAIGLFNDM-KLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVK 256

Query: 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK--------P 477
           P++ TY SL +G  L ++  +A  ++  + +R      GV A+       +        P
Sbjct: 257 PDIITYNSLMDGYCLVKEVDKAKNIFNTMVQR------GVTANVRTMNLFQEMHCKEIIP 310

Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
           D     +L D   ++    +ALE+V  M + G PPN   Y  I
Sbjct: 311 DTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSI 353



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 30/271 (11%)

Query: 57  DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK---PDVLTYNVMI-KLCARASRKHLL 112
           D   Y A++N    L K K     FD   E  AK   PDV TYN MI   C     K  +
Sbjct: 153 DVVMYTAIING---LCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAI 209

Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLE 171
               +  LE  +     TF +LV+A+   G++   + +V  M +EG +         D+ 
Sbjct: 210 GLFNDMKLE-NVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKP--------DII 260

Query: 172 DYSSENEG-----DDDDDDEVFEKLLPNSINPSSEPPLL-----PKTFAPNSRIYTTLMK 221
            Y+S  +G     + D    +F  ++   +  +     L      K   P++  Y++L+ 
Sbjct: 261 TYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLID 320

Query: 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
           G+   GR+   + ++  M    D    P+ +TY +++ AL K   +++   +L ++   G
Sbjct: 321 GFCKSGRIPQALELVDEM---HDRGQPPNIITYNSILYALCKIHHVEKTIALLRKIKVKG 377

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREM 312
           +  +  TY IL  G  +  ++++A+E+  ++
Sbjct: 378 IQPDAYTYTILTNGLFKDGRLEEAREIFPDL 408



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 34/220 (15%)

Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
           P +  +  ++    L +  + AL+F  ++  +GI P   +Y  L+  F+     +L +  
Sbjct: 61  PPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFS-----QLGHTH 115

Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           F          +D V++  L+ G C++G    A R+++ + E     +V  Y ++ NG+ 
Sbjct: 116 F----------LDRVSYETLINGLCKVGETRAALRLLKEVNEKIVQYDVVMYTAIINGLC 165

Query: 440 LARKPGEALLLWKEIKER----------------CEVK--KEGVNADSDLP-PPLKPDEE 480
             +   +A  L+ E+  +                C V   K+ +   +D+    ++ DE 
Sbjct: 166 KDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEY 225

Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
             + L     +    R+   +VA M + G+ P+   Y  +
Sbjct: 226 TFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSL 265


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 193/440 (43%), Gaps = 39/440 (8%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKR--VRKFSDPDIVSDSKPDT 58
           +LR+G+ P   A+++ V     +G      + +LF ++  R  VR               
Sbjct: 98  LLRAGFAPDSHAYTSFVVGYCRAGL--LAHACRLFVLMPLRGCVRT-------------A 142

Query: 59  AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
             Y A+L+     G  ++ + +F  M   G  PD   Y  M+     A R      +L  
Sbjct: 143 FTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSD 202

Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDYSSEN 177
            +  G    +  + +L+  Y   GDLE+A  + + M   G     +   EL +  +    
Sbjct: 203 AMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTEL-ISGFCKSR 261

Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
           +   D    +F +++   +              PN   YT L++G  ++G++    R+L 
Sbjct: 262 K--LDRAMMLFSRMVDAGL-------------VPNVVTYTALIQGQCSDGQLDCAYRLLQ 306

Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
           +M   E++   P+  T + ++ AL K   +  A+ +L  + + G+  N I Y  L+ G C
Sbjct: 307 SM---ENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLC 363

Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
           +  +   A  L++ +     + PD  +Y+ LIDG     + + A+   ++M  +G+ P+ 
Sbjct: 364 KAGRFAAADRLMQTLVSQGFV-PDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSP 422

Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
           ++YT ++           + K+ D+M+    +K D+  + + V  YC  G +E+A+ ++ 
Sbjct: 423 VTYTIIIDELVREVGADGSKKILDKMIA-AGIKPDVFTYTIFVRSYCHEGRMEDAEHMML 481

Query: 418 RMKENGFYPNVATYGSLANG 437
            M ++G  PN+ TY +L  G
Sbjct: 482 HMVDHGVCPNLVTYNALICG 501



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 103/478 (21%), Positives = 215/478 (44%), Gaps = 58/478 (12%)

Query: 8   PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
           PHV  ++T+V  L  +G     E++             SD  +    +P+   YNA+++ 
Sbjct: 177 PHV--YATMVHGLCGAGRTREAETL------------LSDA-MAEGFEPNVVVYNALIDG 221

Query: 68  CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
             N+G  +  + +F++M   G  P+V TY  +I    ++ +    + +  R+++ G+   
Sbjct: 222 YCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPN 281

Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREG----RRDVCKIIRELDLEDYSSENEGDDDD 183
           + T+ +L+      G L+ A  ++Q+M           C ++ +  L  +    E     
Sbjct: 282 VVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLID-ALCKHERVGEAQLLL 340

Query: 184 DDEVFEKLLPNSINPSS-----------------EPPLLPKTFAPNSRIYTTLMKGYMNE 226
              + + +  N I  +S                    L+ + F P++  Y++L+ G   +
Sbjct: 341 GSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQ 400

Query: 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286
             +S+ + +L  M    +    P  VTYT ++  LV+    D ++++L +M   G+  + 
Sbjct: 401 KELSEAMLVLDDMM---EKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDV 457

Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
            TY I ++ YC + +++ A+ ++  M D   + P++V+YN LI G+  +  ++ A + F 
Sbjct: 458 FTYTIFVRSYCHEGRMEDAEHMMLHMVDHG-VCPNLVTYNALICGYANLGLTSQAFSTFK 516

Query: 347 EMRARGIAPTKISYTTLMK------------AFALS----SQPKLANKVFDEMLRDPRVK 390
            M A G  P + SYT L++            A ++S    ++ K  + + +EM++  ++ 
Sbjct: 517 HMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVK-LQLP 575

Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
            +I  +N  +   CR+  ++EAK ++  M+     P+   Y S+       +   EAL
Sbjct: 576 SEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEAL 633



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 150/340 (44%), Gaps = 24/340 (7%)

Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
           LL   FAP+S  YT+ + GY   G ++   R+   M  +          TYT ++  L  
Sbjct: 98  LLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLR---GCVRTAFTYTALLHGLCG 154

Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
           AG +  A  V A M   G   +   Y  ++ G C   +  +A+ LL +   +   EP+VV
Sbjct: 155 AGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEG-FEPNVV 213

Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
            YN LIDG+  + D   A+  F  M   G +P   +YT L+  F  S +   A  +F  M
Sbjct: 214 VYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRM 273

Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
           + D  +  ++V +  L++G C  G ++ A R+++ M+ +G  PN  T   L + +    +
Sbjct: 274 V-DAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHER 332

Query: 444 PGEA-LLLWKEIKERCEVK------------KEGVNADSD------LPPPLKPDEELLDA 484
            GEA LLL   I++  +V             K G  A +D      +     PD     +
Sbjct: 333 VGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSS 392

Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
           L D   R     +A+ ++  M E G+ P+   Y  I  E+
Sbjct: 393 LIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDEL 432



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 149/356 (41%), Gaps = 25/356 (7%)

Query: 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA 264
           + + F PN  +Y  L+ GY N G +   V +     R + N   P+  TYT ++S   K+
Sbjct: 204 MAEGFEPNVVVYNALIDGYCNVGDLELAVDVF---ERMDVNGCSPNVRTYTELISGFCKS 260

Query: 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS 324
             +DRA  + + M   G+  N +TY  L++G C   Q+D A  LL+ M +++ + P+  +
Sbjct: 261 RKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSM-ENSGLVPNEWT 319

Query: 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384
            ++LID     +    A      +  +GI   +I YT+L+     + +   A+++   ++
Sbjct: 320 CSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLV 379

Query: 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444
               V  D   ++ L++G CR   + EA  +++ M E G  P+  TY  + +   L R  
Sbjct: 380 SQGFVP-DAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIID--ELVR-- 434

Query: 445 GEALLLWKEIKERCEVKKEGVNA--DSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502
                         EV  +G     D  +   +KPD                   A  ++
Sbjct: 435 --------------EVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMM 480

Query: 503 ACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558
             M +HG+ PN   Y  +     +   TS+  S  +       K   E++   L L
Sbjct: 481 LHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRL 536



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 157/405 (38%), Gaps = 81/405 (20%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-----KLCARASRKH 110
           PD   Y+++++      +  + + + D M E G +P  +TY ++I     ++ A  S+K 
Sbjct: 385 PDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKK- 443

Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
               +L++++  GI   + T+   V +Y   G +E AE ++  M +    VC        
Sbjct: 444 ----ILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVD--HGVC-------- 489

Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
                                                   PN   Y  L+ GY N G  S
Sbjct: 490 ----------------------------------------PNLVTYNALICGYANLGLTS 509

Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS----------------MDRARQVL 274
                    +    N   P+  +YT ++  L+K  S                M     +L
Sbjct: 510 QA---FSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLL 566

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
            EM ++ +P+    YN  L   C+  ++D+AK LL EM   A + P    Y  +I     
Sbjct: 567 EEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEM-QSANLTPSEDVYTSIIACCCR 625

Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
           +     ALTF + M   G  P   SY  ++ +       + A +VF +ML       + +
Sbjct: 626 LKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDML-SKEYNYEEI 684

Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
           AW +L++G  + G V E   ++  M+E  + P+ A Y  L   I+
Sbjct: 685 AWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARLTGKIT 729



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 2/221 (0%)

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
           RML  M          +  TYTT+++A   AG +  +++ L+ + R G   +   Y   +
Sbjct: 55  RMLADMESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFV 114

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            GYC+   +  A  L   M     +     +Y  L+ G         A++ F  M+A G 
Sbjct: 115 VGYCRAGLLAHACRLFVLMPLRGCVRT-AFTYTALLHGLCGAGMVREAMSVFAGMQADGC 173

Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
           AP    Y T++     + + + A  +  + + +   + ++V +N L++GYC +G +E A 
Sbjct: 174 APDPHVYATMVHGLCGAGRTREAETLLSDAMAEG-FEPNVVVYNALIDGYCNVGDLELAV 232

Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
            + ERM  NG  PNV TY  L +G   +RK   A++L+  +
Sbjct: 233 DVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRM 273


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 154/313 (49%), Gaps = 23/313 (7%)

Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
           I+ ++ +GY    R  D +R+   M   E     P    Y T++  LV+   + RA    
Sbjct: 87  IFLSICRGYGRVHRPLDAIRVFHKM---EGFQLRPTQKAYLTILDILVEENHVKRAIGFY 143

Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQ-IDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
            EM  +G+P++ ++ NIL+K  C+  + +D A  + +EM +    +PD  +Y  LI+G  
Sbjct: 144 REMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRG-CQPDSYTYGTLINGLC 202

Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
            + + + A   F EM  +G + + ++YT+L+     S+    A  + +EM R+  ++ ++
Sbjct: 203 RLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRND-IEPNV 261

Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
             ++ L++G C+ G   +A +++E M +    PN+ TY +L NG+   RK  EA+    E
Sbjct: 262 FTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAV----E 317

Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
           I +R  ++             LKP+  L   +      A  +++A   +  M   GI PN
Sbjct: 318 ILDRMRIQ------------GLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPN 365

Query: 514 KTKYKKIYVEMHS 526
           +  +  ++V MH+
Sbjct: 366 RASW-SLHVRMHN 377



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%)

Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
           N+  V   +R+   M    +    PD  TY T+++ L + G++  A+++  EM + G  A
Sbjct: 168 NKETVDSALRIFQEM---PNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSA 224

Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
           + +TY  L+ G CQ   +D+A  LL EM  +  IEP+V +Y+ L+DG      S+ A+  
Sbjct: 225 SVVTYTSLIHGLCQSNNLDEAIGLLEEMKRN-DIEPNVFTYSSLMDGLCKGGHSSQAMQL 283

Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
              M  +   P  ++Y+TL+       + + A ++ D M R   +K +   +  ++ G C
Sbjct: 284 LEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRM-RIQGLKPNAGLYGKIISGLC 342

Query: 405 RMGLVEEAKRIIERMKENGFYPNVATY-------GSLANGISLARKPGEALLLWKEIKER 457
             G  +EA   I+ M   G  PN A++         +  G+     P  A  L+  ++ R
Sbjct: 343 AAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTR 402

Query: 458 C 458
           C
Sbjct: 403 C 403



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 165/401 (41%), Gaps = 63/401 (15%)

Query: 55  KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
           +P   AY  +L+        K+ +  + +M E G    V++ N++IK LC         +
Sbjct: 117 RPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSAL 176

Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
            + + +   G      T+ +L+      G++  A+ + + M +                 
Sbjct: 177 RIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQ----------------- 219

Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
                                            K F+ +   YT+L+ G      + + +
Sbjct: 220 ---------------------------------KGFSASVVTYTSLIHGLCQSNNLDEAI 246

Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
            +L  M+R   N   P+  TY++++  L K G   +A Q+L  M +     N +TY+ L+
Sbjct: 247 GLLEEMKR---NDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLI 303

Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
            G C++ ++ +A E+L  M     ++P+   Y  +I G         A  F +EM   GI
Sbjct: 304 NGLCKERKLREAVEILDRMRIQG-LKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGI 362

Query: 354 APTKISYTTLMKAFALSSQ-------PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
           +P + S++  ++   +  Q       P  A +++  M R   + V+I  ++ LV+ +C+ 
Sbjct: 363 SPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSM-RTRCISVEIDTFDCLVKCFCKR 421

Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
           G + +A RI+E M  +G  P+   +  +  G+   +K  EA
Sbjct: 422 GDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREA 462


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 123/509 (24%), Positives = 214/509 (42%), Gaps = 73/509 (14%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT  Y  +++        ++ +    +M      P+VLTY ++  LC   +++ L    
Sbjct: 40  PDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRIL--LCGCLNKEKL--GR 95

Query: 116 LERILEMGITL-CMTT---FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
            +RIL M IT  C  +   F SLV AY   GD   A  +++ M +       ++  + + 
Sbjct: 96  CKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIG 155

Query: 172 DY-SSENEGDD--DDDDEVFEKLLP-----NSINPSSEP-----------------PLLP 206
              SSE  G D  D  ++ + ++L      N +N S+                    ++ 
Sbjct: 156 GICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMS 215

Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
           K F P++  Y+ ++    N  +V    ++   M+R   N   PD   YTT++ +  KAG 
Sbjct: 216 KGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKR---NGIAPDVYVYTTLIDSFCKAGF 272

Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
           +++AR    EM R G   N +TY  L+  Y +  ++ KA E+  EM       P++V+Y 
Sbjct: 273 IEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVY-EMMLSKGCTPNIVTYT 331

Query: 327 ILIDGFILIDDSAGALTFFNEMRARGI-----------------APTKISYTTLMKAFAL 369
            LIDG         A   +  M+   +                  P   +Y  L+     
Sbjct: 332 ALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCK 391

Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
           + Q K A  +   M  +   + + V ++ L++G C+ G ++EA+ +   M E G+ PNV 
Sbjct: 392 AYQVKEARDLLKSMSVEG-CEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVY 450

Query: 430 TYGSLANGISLARKPGEAL-LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADI 488
           TY SL + +   ++   AL +L K ++  C              P +    E++D L   
Sbjct: 451 TYSSLIDRLFKDKRLDLALKVLSKMLENSC-------------APNVVIYTEMIDGLC-- 495

Query: 489 CVRAAFFRKALEIVACMEEHGIPPNKTKY 517
             +     +A +++  MEE G  PN   Y
Sbjct: 496 --KVGKTDEAYKLMVMMEEKGCNPNVVTY 522



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 112/507 (22%), Positives = 202/507 (39%), Gaps = 72/507 (14%)

Query: 41  RVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
           R ++     I     P    +N++++A    G      +L  +M + G +P  + YN++I
Sbjct: 95  RCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILI 154

Query: 101 K-LCARASRKHLLVFVLER----ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAM 154
             +C+       ++ + E+    +LE G+ L      +      G G  E A  ++ + M
Sbjct: 155 GGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMM 214

Query: 155 REG----RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210
            +G         K+I  L        N    +   ++F+++  N I             A
Sbjct: 215 SKGFIPDTSTYSKVIGYLC-------NASKVEKAFQLFQEMKRNGI-------------A 254

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
           P+  +YTTL+  +   G +         M R   +   P+ VTYT ++ A +K+  + +A
Sbjct: 255 PDVYVYTTLIDSFCKAGFIEQARNWFDEMER---DGCAPNVVTYTALIHAYLKSRKVSKA 311

Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM----------------AD 314
            +V   M   G   N +TY  L+ G C+  +I+KA ++ + M                 D
Sbjct: 312 NEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVD 371

Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
            A  EP+V +Y  L+DG         A      M   G  P  + Y  L+     + +  
Sbjct: 372 GASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLD 431

Query: 375 LANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431
            A +VF  ML    DP    ++  ++ L++   +   ++ A +++ +M EN   PNV  Y
Sbjct: 432 EAQEVFTTMLECGYDP----NVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIY 487

Query: 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491
             + +G+    K  EA  L   ++E+      G N          P+     A+ D   +
Sbjct: 488 TEMIDGLCKVGKTDEAYKLMVMMEEK------GCN----------PNVVTYTAMIDGFGK 531

Query: 492 AAFFRKALEIVACMEEHGIPPNKTKYK 518
           +    K LE++  M   G  PN   Y+
Sbjct: 532 SGRVEKCLELLQQMSSKGCAPNFVTYR 558



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 153/368 (41%), Gaps = 80/368 (21%)

Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS---- 266
           P+ RI+ +L+  Y   G  +   ++L   ++       P +V Y  ++  +  +      
Sbjct: 110 PSPRIFNSLVHAYCRSGDYAYAYKLL---KKMVQCGCQPGYVVYNILIGGICSSEEPGKD 166

Query: 267 -MDRARQVLAEMTRIGVPANRIT-----------------YNIL---------------- 292
            +D A +   EM   GV  N++                  YN++                
Sbjct: 167 VLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYS 226

Query: 293 -LKGY-CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
            + GY C   +++KA +L +EM  +  I PDV  Y  LID F        A  +F+EM  
Sbjct: 227 KVIGYLCNASKVEKAFQLFQEMKRNG-IAPDVYVYTTLIDSFCKAGFIEQARNWFDEMER 285

Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
            G AP  ++YT L+ A+  S +   AN+V+ EM+       +IV +  L++G C+ G +E
Sbjct: 286 DGCAPNVVTYTALIHAYLKSRKVSKANEVY-EMMLSKGCTPNIVTYTALIDGLCKAGKIE 344

Query: 411 EAKRIIERMKENGFY-----------------PNVATYGSLANGISLARKPGEALLLWKE 453
           +A +I + MK+                     PNV TYG+L +G+  A +  EA  L K 
Sbjct: 345 KASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKS 404

Query: 454 IK-ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
           +  E CE                 P+  + DAL D C +A    +A E+   M E G  P
Sbjct: 405 MSVEGCE-----------------PNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDP 447

Query: 513 NKTKYKKI 520
           N   Y  +
Sbjct: 448 NVYTYSSL 455



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 168/415 (40%), Gaps = 66/415 (15%)

Query: 56  PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
           PDT+ Y+ V+    N  K +K  QLF +M   G  PDV  Y  +I    +A         
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
            + +   G    + T+ +L+ AY+                   R V K            
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLK-----------------SRKVSKA----------- 311

Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
                    +EV+E +L              K   PN   YT L+ G    G++    ++
Sbjct: 312 ---------NEVYEMMLS-------------KGCTPNIVTYTALIDGLCKAGKIEKASQI 349

Query: 236 LGAMRRQE-------------DNASH-PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
              M+++              D AS+ P+  TY  +V  L KA  +  AR +L  M+  G
Sbjct: 350 YKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEG 409

Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
              N + Y+ L+ G C+  ++D+A+E+   M +    +P+V +Y+ LID          A
Sbjct: 410 CEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLE-CGYDPNVYTYSSLIDRLFKDKRLDLA 468

Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401
           L   ++M     AP  + YT ++       +   A K+   M+ +     ++V +  +++
Sbjct: 469 LKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM-VMMEEKGCNPNVVTYTAMID 527

Query: 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
           G+ + G VE+   ++++M   G  PN  TY  L N         EA  L +E+K+
Sbjct: 528 GFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/455 (20%), Positives = 179/455 (39%), Gaps = 91/455 (20%)

Query: 1   MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
           M+  G++P    +S V+  L    +   VE  K F +  +  R        +   PD   
Sbjct: 213 MMSKGFIPDTSTYSKVIGYLC---NASKVE--KAFQLFQEMKR--------NGIAPDVYV 259

Query: 61  YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
           Y  ++++    G  ++    FD+M   G  P+V+TY  +I    ++ +      V E +L
Sbjct: 260 YTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMML 319

Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV------------------- 161
             G T  + T+ +L+      G +E A  I + M++   ++                   
Sbjct: 320 SKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNV 379

Query: 162 ----------CK---------IIRELDLEDYSSEN------------EGDDDDDDEVFEK 190
                     CK         +++ + +E     +             G  D+  EVF  
Sbjct: 380 FTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTT 439

Query: 191 LL-----PNSINPSSE-----------------PPLLPKTFAPNSRIYTTLMKGYMNEGR 228
           +L     PN    SS                    +L  + APN  IYT ++ G    G+
Sbjct: 440 MLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 499

Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
             +  +++  M   E+   +P+ VTYT ++    K+G +++  ++L +M+  G   N +T
Sbjct: 500 TDEAYKLMVMM---EEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVT 556

Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
           Y +L+   C    +D+A +LL EM         V  Y  +I+GF     ++  L+F  E+
Sbjct: 557 YRVLINHCCSTGLLDEAHKLLEEM-KQTYWPRHVAGYRKVIEGFNREFIASLYLSF--EI 613

Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
                 P    Y  L+  F  + + ++A ++ +E+
Sbjct: 614 SENDSVPVAPVYRVLIDNFIKAGRLEIALELNEEL 648


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.136    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,230,531,951
Number of Sequences: 23463169
Number of extensions: 380833258
Number of successful extensions: 1579696
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7246
Number of HSP's successfully gapped in prelim test: 4866
Number of HSP's that attempted gapping in prelim test: 1342791
Number of HSP's gapped (non-prelim): 100281
length of query: 583
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 435
effective length of database: 8,886,646,355
effective search space: 3865691164425
effective search space used: 3865691164425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)