BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007970
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 230 SDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
++ +R +GA R + +P ++ YT + + +AG + A+ + ++ + +P + IT
Sbjct: 262 AEALRQMGAARNEVPGRRGYPGYM-YTDLATLYERAGIVKGAKGSVTQIPILSMPGDDIT 320
Query: 289 YNIL-LKGYCQQLQIDKAKELLRE 311
+ I L GY + QI A+EL R+
Sbjct: 321 HPIPDLSGYITEGQIVVARELHRK 344
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 230 SDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
++ +R +GA R + +P ++ YT + + +AG + A+ + ++ + +P + IT
Sbjct: 262 AEALRQMGAARNEVPGRRGYPGYM-YTDLATLYERAGIVKGAKGSVTQIPILSMPGDDIT 320
Query: 289 YNIL-LKGYCQQLQIDKAKELLRE 311
+ I L GY + QI A+EL R+
Sbjct: 321 HPIPDLSGYITEGQIVVARELHRK 344
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 230 SDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
++ +R +GA R + +P ++ YT + + +AG + A+ + ++ + +P + IT
Sbjct: 253 AEALRQMGAARNEVPGRRGYPGYM-YTDLATLYERAGIVKGAKGSVTQIPILSMPGDDIT 311
Query: 289 YNIL-LKGYCQQLQIDKAKELLRE 311
+ I L GY + QI A+EL R+
Sbjct: 312 HPIPDLSGYITEGQIVVARELHRK 335
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 230 SDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
++ +R +GA R + +P ++ YT + + +AG + A+ + ++ + +P + IT
Sbjct: 253 AEALRQMGAARNEVPGRRGYPGYM-YTDLATLYERAGIVKGAKGSVTQIPILSMPGDDIT 311
Query: 289 YNIL-LKGYCQQLQIDKAKELLRE 311
+ I L GY + QI A+EL R+
Sbjct: 312 HPIPDLSGYITEGQIVVARELHRK 335
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 230 SDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
++ +R +GA R + +P ++ YT + + +AG + A+ + ++ + +P + IT
Sbjct: 253 AEALRQMGAARNEVPGRRGYPGYM-YTDLATLYERAGIVKGAKGSVTQIPILSMPGDDIT 311
Query: 289 YNIL-LKGYCQQLQIDKAKELLRE 311
+ I L GY + QI A+EL R+
Sbjct: 312 HPIPDLSGYITEGQIVVARELHRK 335
>pdb|2REK|A Chain A, Crystal Structure Of Tetr-Family Transcriptional Regulator
pdb|2REK|B Chain B, Crystal Structure Of Tetr-Family Transcriptional Regulator
Length = 199
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 246 ASHPDHVTYTTVVSALVKAGSMDR--ARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
A HP T +++L G++ R AR +L PA L C+QL +
Sbjct: 83 AEHPPATALTRWLTSLAVFGAVTRGAARSLL--------PATGTNTGAALDSRCEQLLTE 134
Query: 304 KAKELLREMADDAKIEPDVVSYNIL 328
+LL +D + DV + +L
Sbjct: 135 AGADLLARAQEDGTVRDDVTALELL 159
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 170 LEDYS-SENEGXXXXXXEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
L+D S +ENE +++L N + P +E P LP S +Y + G G+
Sbjct: 35 LKDQSHNENEEDKVSSSSFRQRILGNLLQPPNERPELP------SGLYVLGLTGISGSGK 88
Query: 229 VSDTVRM--LGAMRRQEDNASH----PDHVTYTTVVSA-----LVKAGSMDR 269
S R+ LGA D+ H P Y VV A L K G+++R
Sbjct: 89 SSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINR 140
>pdb|2FSV|C Chain C, Structure Of Transhydrogenase
(Di.D135n.Nad+)2(Diii.E155w.Nadp+)1 Asymmetric Complex
Length = 203
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
VKAGS + A ++ +++ I++ GY + + +A+ LREMAD K E
Sbjct: 31 VKAGSAEDAAFIMKNASKV----------IIVPGYG--MAVAQAQHALREMADVLKKEGV 78
Query: 322 VVSYNI 327
VSY I
Sbjct: 79 EVSYAI 84
>pdb|1E3T|A Chain A, Solution Structure Of The Nadp(H) Binding Component (Diii)
Of Proton-Translocating Transhydrogenase From
Rhodospirillum Rubrum
pdb|1HZZ|C Chain C, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
pdb|1NM5|C Chain C, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
pdb|1U28|C Chain C, R. Rubrum Transhydrogenase Asymmetric Complex
(Di.Nad+)2(Diii.Nadp+)1
pdb|1U2D|C Chain C, Structre Of Transhydrogenaes (Di.Nadh)2(Diii.Nadph)1
Asymmetric Complex
pdb|1U2G|C Chain C, Transhydrogenase (Di.Adpr)2(Diii.Nadph)1 Asymmetric
Complex
pdb|2FR8|C Chain C, Structure Of Transhydrogenase
(Di.R127a.Nad+)2(Diii.Nadp+)1 Asymmetric Complex
pdb|2FRD|C Chain C, Structure Of Transhydrogenase
(di.s138a.nadh)2(diii.nadph)1 Asymmetric Complex
Length = 203
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
VKAGS + A ++ +++ I++ GY + + +A+ LREMAD K E
Sbjct: 31 VKAGSAEDAAFIMKNASKV----------IIVPGYG--MAVAQAQHALREMADVLKKEGV 78
Query: 322 VVSYNI 327
VSY I
Sbjct: 79 EVSYAI 84
>pdb|1PTJ|C Chain C, Crystal Structure Analysis Of The Di And Diii Complex Of
Transhydrogenase With A Thio-Nicotinamide Nucleotide
Analogue
pdb|2OO5|C Chain C, Structure Of Transhydrogenase (Di.H2nadh)2(Diii.Nadp+)1
Asymmetric Complex
pdb|2OOR|C Chain C, Structure Of Transhydrogenase (Di.Nad+)2(Diii.H2nadph)1
Asymmetric Complex
Length = 174
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
VKAGS + A ++ +++ I++ GY + + +A+ LREMAD K E
Sbjct: 2 VKAGSAEDAAFIMKNASKV----------IIVPGYG--MAVAQAQHALREMADVLKKEGV 49
Query: 322 VVSYNI 327
VSY I
Sbjct: 50 EVSYAI 55
>pdb|4ED9|A Chain A, Crystal Structure Of A CaibBAIF FAMILY PROTEIN FROM
BRUCELLA SUIS
Length = 385
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 211 PNSRIYTTLM--KGYM-----NEGRVS--DTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
PN Y TL GY N+G+ T+ +G + + E A++ V ++AL
Sbjct: 238 PNIAPYQTLSVSDGYFIIACGNDGQFGKLSTLLGIGELAKDERFATNSARVANRAALTAL 297
Query: 262 VKAGSMDRARQ-VLAEMTRIGVPANRIT 288
++ + R +LAE+ +IGVPA I
Sbjct: 298 LEERTKQWKRDDLLAELAKIGVPAGPIN 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,866,595
Number of Sequences: 62578
Number of extensions: 583099
Number of successful extensions: 1291
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1286
Number of HSP's gapped (non-prelim): 22
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)