BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007970
(583 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/597 (72%), Positives = 497/597 (83%), Gaps = 26/597 (4%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+RSGYLPHVKAW+ V+ L+ASGDDGP ES+KLF + +RV++F D +V S+PDTAA
Sbjct: 179 MIRSGYLPHVKAWTAAVASLSASGDDGPEESIKLFIAITRRVKRFGDQSLVGQSRPDTAA 238
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+NAVLNACANLG K+ +LF++M E+ +PDVLTYNVMIKLCAR RK L+VFVLERI+
Sbjct: 239 FNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERII 298
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL---------- 170
+ GI +CMTT SLVAAYVGFGDL AE IVQAMRE RRD+CK++RE +
Sbjct: 299 DKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEE 358
Query: 171 -------------EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
YS+ +E ++ +VF+KLLPNS++PS EPPLLPK FAP+SRIYT
Sbjct: 359 AEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYT 418
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
TLMKGYM GRV+DT RML AMRRQ+D SHPD VTYTTVVSA V AG MDRARQVLAEM
Sbjct: 419 TLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEM 478
Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
R+GVPANRITYN+LLKGYC+QLQID+A++LLREM +DA IEPDVVSYNI+IDG ILIDD
Sbjct: 479 ARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDD 538
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
SAGAL FFNEMR RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AWN
Sbjct: 539 SAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWN 598
Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
MLVEGYCR+GL+E+A+R++ RMKENGFYPNVATYGSLANG+S ARKPG+ALLLWKEIKER
Sbjct: 599 MLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKER 658
Query: 458 CEVKKEGVNADSD---LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
C VKK+ +DS PP LKPDE LLD LADICVRAAFF+KALEI+ACMEE+GIPPNK
Sbjct: 659 CAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNK 718
Query: 515 TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP 571
TKYKKIYVEMHSRMFTSKHASQAR DRR ERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 719 TKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 775
>sp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100,
mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2
SV=1
Length = 793
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 155/606 (25%), Positives = 266/606 (43%), Gaps = 69/606 (11%)
Query: 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-----KPDTAAYN 62
PHV AWS V++ ++ +G + + + ++ DP S++ KP+T N
Sbjct: 203 PHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQVLN 262
Query: 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
L C G +K QL D + + G K D +M + R R+ L L+R ++
Sbjct: 263 VALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELR-KLQRHIDE 321
Query: 123 GITLCMTTF----QSLVAAYVGFGDLEIAETIV-QAMREG---RRDVCKIIRELDLED-- 172
L + F L+ ++ FGDLE A +V + +R G R + I E D D
Sbjct: 322 ACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDG 381
Query: 173 --YSSENEGDDDD----DDEVFEKLLPNSINPSSE------------------PPLLPK- 207
Y+ G + D+ + +S+ P E LL K
Sbjct: 382 RLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLAKL 441
Query: 208 ------------TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
P IY L K ++ G++ + + L ED+ D+
Sbjct: 442 HVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFL-LKAEHEDSPVSSDNSMLI 500
Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
V++A + G +D+A +L EM GV Y+ LLK YC Q + LLR+ A
Sbjct: 501 NVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRD-AQK 559
Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKISYTTLMKAFALSSQPK 374
A I+ D Y LI ++ +D+ GAL F EM+ A+ + + L+K +++
Sbjct: 560 AGIQLDSSCYEALIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAG 619
Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
L +K+ E+ + + WN ++ + + GL+++A++ ++RM+ G PN T+ S+
Sbjct: 620 LMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSM 679
Query: 435 ANGIS-LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
G + + K E LW E+K + + +K D+ELLDA+ VR
Sbjct: 680 VTGYAAIGSKYTEVTELWGEMK-----------SIAAATSSMKFDQELLDAVLYTFVRGG 728
Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFK 553
FF +A E+V ME+ + +K KY+ ++++ H + K A + + + + +++ A FK
Sbjct: 729 FFSRANEVVEMMEKKNMFVDKYKYRMLFLKYHKTAYKGK-APKVQSESQLKKREAGLVFK 787
Query: 554 FWLGLP 559
WLGL
Sbjct: 788 KWLGLS 793
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/474 (27%), Positives = 238/474 (50%), Gaps = 43/474 (9%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
+PDT +N +LN + + L+L D+M E G KP ++T N ++ LC +V
Sbjct: 155 EPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV 214
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
+ +R++E G T+ ++ G +A +++ M E R++ +LD Y
Sbjct: 215 LI-DRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE--RNI-----KLDAVKY 266
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
S +G D L N+ N +E + K F + Y TL+ G+ N GR D
Sbjct: 267 SIIIDGLCKDGS------LDNAFNLFNEMEI--KGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
++L M +++ P+ VT++ ++ + VK G + A Q+L EM + G+ N ITYN L+
Sbjct: 319 KLLRDMIKRK---ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLI 375
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
G+C++ ++++A +++ M +PD++++NILI+G+ + L F EM RG+
Sbjct: 376 DGFCKENRLEEAIQMVDLMISKG-CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
++Y TL++ F S + ++A K+F EM+ RV+ DIV++ +L++G C G +E+A
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMV-SRRVRPDIVSYKILLDGLCDNGELEKAL 493
Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
I +++++ ++ Y + +G+ A K +A L+ C + +GV D+
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF------CSLPLKGVKLDARAYN 547
Query: 474 PLKPDEELLDAL--ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
+ + D+L ADI FRK M E G P++ Y I + H
Sbjct: 548 IMISELCRKDSLSKADI-----LFRK-------MTEEGHAPDELTY-NILIRAH 588
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 37/345 (10%)
Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
S+ ++ + P++ I+ TL+ G E RVS+ + ++ R + P +T T+V
Sbjct: 144 STMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVD---RMVEMGHKPTLITLNTLV 200
Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
+ L G + A ++ M G N +TY +L C+ Q A ELLR+M ++ I
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-EERNI 259
Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
+ D V Y+I+IDG A FNEM +G I+Y TL+ F + + K
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAK 319
Query: 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
+ +M++ ++ ++V +++L++ + + G + EA ++++ M + G PN TY SL +G
Sbjct: 320 LLRDMIK-RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498
+ EA+ + D + PD + L + +A
Sbjct: 379 CKENRLEEAIQM----------------VDLMISKGCDPDIMTFNILINGYCKANRIDDG 422
Query: 499 LEIVACMEEHGIPPNKTKY----------------KKIYVEMHSR 527
LE+ M G+ N Y KK++ EM SR
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 135/336 (40%), Gaps = 58/336 (17%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P+T YN++++ + ++ +Q+ D M G PD++T+N++I +A+R + +
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
+ G+ T+ +LV + G LE+A+ + Q M
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM--------------------- 464
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ + P+ Y L+ G + G + + +
Sbjct: 465 -----------------------------VSRRVRPDIVSYKILLDGLCDNGELEKALEI 495
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
G + E + D Y ++ + A +D A + + GV + YNI++
Sbjct: 496 FGKI---EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISE 552
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C++ + KA L R+M ++ PD ++YNILI + DD+ A EM++ G P
Sbjct: 553 LCRKDSLSKADILFRKMTEEGH-APDELTYNILIRAHLGDDDATTAAELIEEMKSSGF-P 610
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV 391
+S T M LSS +K F +ML R +
Sbjct: 611 ADVS-TVKMVINMLSSGE--LDKSFLDMLSTTRASL 643
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 2/171 (1%)
Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
I +N L + Q + L ++M + I + + +I+I+ F + A +
Sbjct: 89 IDFNRLFSAIAKTKQYELVLALCKQM-ESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMG 147
Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
++ G P + + TL+ L + A ++ D M+ K ++ N LV G C
Sbjct: 148 KIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH-KPTLITLNTLVNGLCLN 206
Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
G V +A +I+RM E GF PN TYG + N + + + A+ L ++++ER
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER 257
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 24/224 (10%)
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
++ D A +L R+M + P V+ +N L L +M ++GIA + +
Sbjct: 67 IKADDAVDLFRDMIQSRPL-PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYT 125
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
+ ++ F + A ++++ +P D V +N L+ G C V EA ++
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEP----DTVIFNTLLNGLCLECRVSEALELV 181
Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
+RM E G P + T +L NG+ L K +A++L + E +
Sbjct: 182 DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE----------------TGFQ 225
Query: 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
P+E + ++ ++ A+E++ MEE I + KY I
Sbjct: 226 PNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 216/470 (45%), Gaps = 43/470 (9%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQL-FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
KPDT YN +LN + G K +++ +M +G KPDV T+NV+IK RA + +
Sbjct: 151 KPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
+LE + G+ TF +++ Y+ GDL+ A I + M E + + + +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
E +D + F + + N F P+ + TL+ G G V +
Sbjct: 270 CKEGRVEDALN---FIQEMSNQ-----------DGFFPDQYTFNTLVNGLCKAGHVKHAI 315
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
++ M ++ PD TY +V+S L K G + A +VL +M N +TYN L+
Sbjct: 316 EIMDVMLQE---GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
C++ Q+++A EL R + I PDV ++N LI G L + A+ F EMR++G
Sbjct: 373 STLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRMGLVE 410
P + +Y L+ +L S+ KL + ML+ + ++ +N L++G+C+
Sbjct: 432 EPDEFTYNMLID--SLCSKGKLDEAL--NMLKQMELSGCARSVITYNTLIDGFCKANKTR 487
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
EA+ I + M+ +G N TY +L +G+ +R+ +A L D
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM----------------DQM 531
Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+ KPD+ ++L R +KA +IV M +G P+ Y +
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/437 (22%), Positives = 185/437 (42%), Gaps = 33/437 (7%)
Query: 3 RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
+ G+ P ++T+V+ L +G VK + D + PD YN
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGH-------------VKHAIEIMDVMLQEGYDPDVYTYN 334
Query: 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
+V++ LG+ K+ +++ DQM P+ +TYN +I + ++ + +
Sbjct: 335 SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 394
Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDD 182
GI + TF SL+ + +A + + MR + + + ++ S+ + D+
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDE- 453
Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
++N + L A + Y TL+ G+ + + + M
Sbjct: 454 ------------ALNMLKQMEL--SGCARSVITYNTLIDGFCKANKTREAEEIFDEM--- 496
Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
E + + VTY T++ L K+ ++ A Q++ +M G ++ TYN LL +C+ I
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556
Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
KA ++++ M + EPD+V+Y LI G A ++ +GI T +Y
Sbjct: 557 KKAADIVQAMTSNG-CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNP 615
Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL-VEEAKRIIERMKE 421
+++ + A +F EML D V++ ++ G C G + EA + + E
Sbjct: 616 VIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE 675
Query: 422 NGFYPNVATYGSLANGI 438
GF P ++ LA G+
Sbjct: 676 KGFVPEFSSLYMLAEGL 692
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/426 (22%), Positives = 178/426 (41%), Gaps = 71/426 (16%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
ML+ GY P V +++V+S L G+ E+V++ D ++ R D P+T
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGE--VKEAVEVLDQMITR-----------DCSPNTVT 367
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF-VLER 118
YN +++ + ++ +L + G PDV T+N +I+ LC +R H + + E
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL--TRNHRVAMELFEE 425
Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
+ G T+ L+ + G L+ A +++ M I ++ + N+
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485
Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML-- 236
+ +E+F+++ + + + NS Y TL+ G RV D +++
Sbjct: 486 --TREAEEIFDEMEVHGV-------------SRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530
Query: 237 -----------------------GAMRRQED-------NASHPDHVTYTTVVSALVKAGS 266
G +++ D N PD VTY T++S L KAG
Sbjct: 531 MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590
Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
++ A ++L + G+ YN +++G ++ + +A L REM + + PD VSY
Sbjct: 591 VEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR 650
Query: 327 ILIDGFILIDDSAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
I+ G + G A+ F E+ +G P S L + S + K+ +
Sbjct: 651 IVFRGLC---NGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNM 707
Query: 383 MLRDPR 388
+++ R
Sbjct: 708 VMQKAR 713
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 230 SDTVRMLGAMRRQEDNAS--------------HPDHVTYTTVVSALVKAGSMDRARQVLA 275
S V++L ++R Q D+++ P+ Y ++ L ++GS D +++L
Sbjct: 48 STDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILE 107
Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD-------------------- 315
+M T+ IL++ Y Q D+ ++ M D+
Sbjct: 108 DMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDG 167
Query: 316 ----------AK-----IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
AK I+PDV ++N+LI A+ +M + G+ P + ++
Sbjct: 168 NSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTF 227
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM- 419
TT+M+ + A ++ ++M+ + V+ N++V G+C+ G VE+A I+ M
Sbjct: 228 TTVMQGYIEEGDLDGALRIREQMV-EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMS 286
Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
++GF+P+ T+ +L NG+ A +K E+ D L PD
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKA----------GHVKHAIEI------MDVMLQEGYDPDV 330
Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+++ + ++A+E++ M PN Y +
Sbjct: 331 YTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371
>sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290
OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1
Length = 658
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/508 (25%), Positives = 223/508 (43%), Gaps = 67/508 (13%)
Query: 55 KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
KPD A NA L AC + + + M G KPD L++ + L AR + +
Sbjct: 212 KPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAYLYARKGLREK-I 270
Query: 114 FVLERILE-MGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLE 171
LE +++ G + ++++ YV GDL+ +++ I+ +++EG +
Sbjct: 271 SELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGGEE----------S 320
Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
+S E Y L+KG++ V
Sbjct: 321 SFSVET--------------------------------------YCELVKGFIESKSVKS 342
Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI-TYN 290
+++ ++ E + D +++A V G D+A +L EM G + I Y
Sbjct: 343 LAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEMIAQGGGSVGIGVYV 402
Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
+LK YC++ + +A +L+ E++ ++ DV N LI+ + D A T F +MR
Sbjct: 403 PILKAYCKEYRTAEATQLVTEISSSG-LQLDVEISNALIEASMTNQDFISAFTLFRDMRE 461
Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
+ K SY T+M + +P+L DE++ DPRV+V+ WN ++ +C+ G +E
Sbjct: 462 NRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWNSIIHAFCKSGRLE 521
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
+A+R RM + PN TY SL NG K LLLW EIK G + +
Sbjct: 522 DARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIK--------GKISSVE 573
Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
+ D L+DA V+ FF A+++V +E I +K +YK+ ++E H ++
Sbjct: 574 AEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKLRL 633
Query: 531 SKHASQARQDRRRERKRAAEAFKFWLGL 558
K + R ++ + AFK W GL
Sbjct: 634 PK-----LRKRNYKKMESLVAFKNWAGL 656
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 222/472 (47%), Gaps = 37/472 (7%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P N++LN + + + + L DQM E G +PD +T+ ++ + ++ V +
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
+ER++ G + T+ +++ G+ ++A ++ M +G+ + +I ++
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK 252
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
DD ++N +E + K P+ Y++L+ N GR SD R+
Sbjct: 253 YRHVDD-------------ALNLFTE--MDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
L M ++ N P+ VT+ +++ A K G + A ++ EM + + N +TYN L+ G
Sbjct: 298 LSDMLERKIN---PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING 354
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
+C ++D+A+++ M + PDVV+YN LI+GF + F +M RG+
Sbjct: 355 FCMHDRLDEAQQIFTLMVSKDCL-PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVG 413
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
++YTTL+ F +S A VF +M+ D V +I+ +N L++G C+ G +E+A +
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVV 472
Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
E ++++ P++ TY ++ G+ A K + L+ C + +GV
Sbjct: 473 FEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF------CSLSLKGV---------- 516
Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
KPD + + + +A + M+E G P+ Y + + H R
Sbjct: 517 KPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTL-IRAHLR 567
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 110/431 (25%), Positives = 188/431 (43%), Gaps = 72/431 (16%)
Query: 30 ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
E+V LF +VK R F P IV SK +L+A A + K + ++M G
Sbjct: 48 EAVDLFGEMVKS-RPF--PSIVEFSK--------LLSAIAKMKKFDLVISFGEKMEILGV 96
Query: 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
++ TYN+MI R S+ + +L +++++G + T SL+ + + A
Sbjct: 97 SHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVA 156
Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
+V M E +
Sbjct: 157 LVDQMVE--------------------------------------------------MGY 166
Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
P++ +TTL+ G + S+ V ++ R PD VTY V++ L K G D
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALV---ERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
A +L +M + + A+ + Y+ ++ C+ +D A L EM D+ I PDV +Y+ LI
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-DNKGIRPDVFTYSSLI 282
Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---D 386
+ A ++M R I P +++ +L+ AFA + A K+FDEM++ D
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342
Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
P +IV +N L+ G+C ++EA++I M P+V TY +L NG A+K +
Sbjct: 343 P----NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVD 398
Query: 447 ALLLWKEIKER 457
+ L++++ R
Sbjct: 399 GMELFRDMSRR 409
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 111/470 (23%), Positives = 193/470 (41%), Gaps = 79/470 (16%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ GY P ++T+V L + E+V L V+R+ +V +PD
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQH--NKASEAVAL----VERM-------VVKGCQPDLVT 207
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y AV+N G+P L L ++M + + DV+ Y+ +I + + + +
Sbjct: 208 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMD 267
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
GI + T+ SL++ +G A ++ M E R+ ++ L D + EG
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE-RKINPNVVTFNSLID-AFAKEGK 325
Query: 181 DDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTT 218
+ +++F++++ SI+P+ ++ K P+ Y T
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 385
Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
L+ G+ +V D + + M R+ + VTYTT++ +A D A+ V +M
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRR---GLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMV 442
Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAK---ELLRE----------------MADDAKIE 319
GV N +TYN LL G C+ +++KA E L++ M K+E
Sbjct: 443 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVE 502
Query: 320 ---------------PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
PDV++YN +I GF A T F +M+ G P +Y TL+
Sbjct: 503 DGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLI 562
Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAW----NMLVEGYCRMGLVE 410
+A + ++ EM R R D + +ML +G G +E
Sbjct: 563 RAHLRDGDKAASAELIKEM-RSCRFAGDASTYGLVTDMLHDGRLDKGFLE 611
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 134/338 (39%), Gaps = 58/338 (17%)
Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
++ + V + G M + P V ++ ++SA+ K D +M +GV N
Sbjct: 45 KLDEAVDLFGEMVKSR---PFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLY 101
Query: 288 TYNI-----------------------------------LLKGYCQQLQIDKAKELLREM 312
TYNI LL G+C +I +A L+ +M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
+ +PD V++ L+ G + ++ A+ M +G P ++Y ++ +
Sbjct: 162 V-EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
P LA + ++M +++ D+V ++ +++ C+ V++A + M G P+V TY
Sbjct: 221 PDLALNLLNKM-EKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279
Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
SL + + + +A L ++ ER + P+ ++L D +
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLER----------------KINPNVVTFNSLIDAFAKE 323
Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRM 528
+A ++ M + I PN Y + MH R+
Sbjct: 324 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/473 (25%), Positives = 219/473 (46%), Gaps = 37/473 (7%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD N++LN + + + L QM E G +PD T+N +I R +R V
Sbjct: 148 EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVA 207
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++R++ G + T+ +V GD+++A ++++ M +G+ + +I ++
Sbjct: 208 LVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALC 267
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+ +D ++N +E + K PN Y +L++ N GR SD R
Sbjct: 268 NYKNVND-------------ALNLFTE--MDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT++ ++ A VK G + A ++ EM + + + TY+ L+
Sbjct: 313 LLSDMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++D+AK + E+ P+VV+YN LI GF + F EM RG+
Sbjct: 370 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLV 428
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++YTTL+ F + + A VF +M+ D V DI+ +++L++G C G VE A
Sbjct: 429 GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG-VLPDIMTYSILLDGLCNNGKVETALV 487
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
+ E ++ + P++ TY + G+ A K + L+ C + +GV
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF------CSLSLKGV--------- 532
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
KP+ + R +A + M+E G P+ Y + + H R
Sbjct: 533 -KPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL-IRAHLR 583
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 177/405 (43%), Gaps = 61/405 (15%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P ++ +L+A A + K + L +QM G ++ TY+++I R S+ L + V
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L +++++G + T SL+ + + A ++V M E
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE------------------- 179
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ P+S + TL+ G R S+ V +
Sbjct: 180 -------------------------------MGYQPDSFTFNTLIHGLFRHNRASEAVAL 208
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ M + PD VTY VV+ L K G +D A +L +M + + + YN ++
Sbjct: 209 VDRMVVK---GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C ++ A L EM D+ I P+VV+YN LI + A ++M R I P
Sbjct: 266 LCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
++++ L+ AF + A K++DEM++ DP DI ++ L+ G+C ++EA
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEA 380
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
K + E M +PNV TY +L G A++ E + L++E+ +R
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQR 425
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 190/441 (43%), Gaps = 43/441 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ G P + + VV+ L GD D+ + ++K I +P
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGD---------IDLALSLLKKMEQGKI----EPGVVI 258
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN +++A N L LF +M G +P+V+TYN +I+ R +L ++
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
E I + TF +L+ A+V G L AE + M + D D+ YSS G
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-------DIFTYSSLINGF 371
Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
D+ +FE ++ K PN Y TL+KG+ RV + + +
Sbjct: 372 CMHDRLDEAKHMFE-------------LMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
R + VTYTT++ +A D A+ V +M GV + +TY+ILL G
Sbjct: 419 F---REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDG 475
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C +++ A + E +K+EPD+ +YNI+I+G F + +G+ P
Sbjct: 476 LCNNGKVETALVVF-EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
++YTT+M F + A+ +F EM + + D +N L+ + R G + +
Sbjct: 535 NVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP-DSGTYNTLIRAHLRDGDKAASAEL 593
Query: 416 IERMKENGFYPNVATYGSLAN 436
I M+ F + +T G + N
Sbjct: 594 IREMRSCRFVGDASTIGLVTN 614
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/435 (24%), Positives = 196/435 (45%), Gaps = 35/435 (8%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ GY P ++T++ L + E+V L D +V V +PD
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRH--NRASEAVALVDRMV-----------VKGCQPDLVT 223
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
Y V+N G L L +M + +P V+ YN +I LC + L E +
Sbjct: 224 YGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE-M 282
Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
GI + T+ SL+ +G A ++ M E R+ ++ L D + EG
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE-RKINPNVVTFSALID-AFVKEG 340
Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
+ ++++++++ SI+ P+ Y++L+ G+ R+ + M M
Sbjct: 341 KLVEAEKLYDEMIKRSID-------------PDIFTYSSLINGFCMHDRLDEAKHMFELM 387
Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
++ P+ VTY T++ KA +D ++ EM++ G+ N +TY L+ G+ Q
Sbjct: 388 ISKD---CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 444
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
+ D A+ + ++M D + PD+++Y+IL+DG AL F ++ + P +
Sbjct: 445 RECDNAQIVFKQMVSDG-VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYT 503
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
Y +++ + + + +F L VK ++V + ++ G+CR GL EEA + M
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCS-LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562
Query: 420 KENGFYPNVATYGSL 434
KE G P+ TY +L
Sbjct: 563 KEEGPLPDSGTYNTL 577
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 117/234 (50%), Gaps = 5/234 (2%)
Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
+N+ ++ D V + G M + P V ++ ++SA+ K D + +M +G+
Sbjct: 57 LNDLKLDDAVNLFGDMVKSR---PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGIS 113
Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
N TY+IL+ +C++ Q+ A +L +M EPD+V+ N L++GF + + A++
Sbjct: 114 HNLYTYSILINCFCRRSQLSLALAVLAKMM-KLGYEPDIVTLNSLLNGFCHGNRISDAVS 172
Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
+M G P ++ TL+ ++ A + D M+ + D+V + ++V G
Sbjct: 173 LVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG-CQPDLVTYGIVVNGL 231
Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
C+ G ++ A ++++M++ P V Y ++ + + + +AL L+ E+ +
Sbjct: 232 CKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 22/305 (7%)
Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
D V LG + Q SH + TY+ +++ + + A VLA+M ++G + +T N
Sbjct: 98 DLVISLGE-QMQNLGISH-NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLN 155
Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
LL G+C +I A L+ +M + +PD ++N LI G + ++ A+ + M
Sbjct: 156 SLLNGFCHGNRISDAVSLVGQMV-EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVV 214
Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
+G P ++Y ++ LA + +M +++ +V +N +++ C V
Sbjct: 215 KGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM-EQGKIEPGVVIYNTIIDALCNYKNVN 273
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
+A + M G PNV TY SL + + +A L ++ ER
Sbjct: 274 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER------------- 320
Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRM 528
+ P+ AL D V+ +A ++ M + I P+ Y + MH R+
Sbjct: 321 ---KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 529 FTSKH 533
+KH
Sbjct: 378 DEAKH 382
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 142/520 (27%), Positives = 238/520 (45%), Gaps = 57/520 (10%)
Query: 3 RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
RSG +V + +V+ L DG +E V F V+ K PDIV+ YN
Sbjct: 228 RSGVGINVYTLNIMVNALC---KDGKMEKVGTFLSQVQE--KGVYPDIVT--------YN 274
Query: 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
+++A ++ G ++ +L + M G P V TYN +I + + V +L
Sbjct: 275 TLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS 334
Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----EN 177
G++ TT++SL+ GD+ E + MR RDV DL +SS
Sbjct: 335 GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS--RDVVP-----DLVCFSSMMSLFTR 387
Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
G+ D F N E L+P ++ IYT L++GY +G +S + +
Sbjct: 388 SGNLDKALMYF--------NSVKEAGLIP-----DNVIYTILIQGYCRKGMISVAMNLRN 434
Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
M +Q D VTY T++ L K + A ++ EMT + + T IL+ G+C
Sbjct: 435 EMLQQ---GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHC 491
Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
+ + A EL ++M + +I DVV+YN L+DGF + D A + +M ++ I PT
Sbjct: 492 KLGNLQNAMELFQKMKEK-RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 550
Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
ISY+ L+ A A +V+DEM+ +K ++ N +++GYCR G + + +E
Sbjct: 551 ISYSILVNALCSKGHLAEAFRVWDEMI-SKNIKPTVMICNSMIKGYCRSGNASDGESFLE 609
Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
+M GF P+ +Y +L G +A L K+++E ++G L P
Sbjct: 610 KMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEE-----EQG---------GLVP 655
Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
D +++ R ++A ++ M E G+ P+++ Y
Sbjct: 656 DVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTY 695
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 102/458 (22%), Positives = 194/458 (42%), Gaps = 68/458 (14%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
MLRSG P + +++ GD VE+ K+F + R D PD
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGD--VVETEKVFSDMRSR-----------DVVPDLVC 377
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
++++++ G K L F+ + E G PD + Y ++I+ R + + + +L
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEML 437
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
+ G + + T+ +++ +CK R++ E
Sbjct: 438 QQGCAMDVVTYNTILHG-----------------------LCK--RKMLGEA-------- 464
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
D++F N +E L P ++ T L+ G+ G + + + + M+
Sbjct: 465 ----DKLF--------NEMTERALFPDSYT-----LTILIDGHCKLGNLQNAMELFQKMK 507
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
+ D VTY T++ K G +D A+++ A+M + I+Y+IL+ C +
Sbjct: 508 EKR---IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKG 564
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
+ +A + EM I+P V+ N +I G+ +++ +F +M + G P ISY
Sbjct: 565 HLAEAFRVWDEMISK-NIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERM 419
TL+ F A + +M + V D+ +N ++ G+CR ++EA+ ++ +M
Sbjct: 624 NTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683
Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
E G P+ +TY + NG EA + E+ +R
Sbjct: 684 IERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQR 721
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 148/334 (44%), Gaps = 35/334 (10%)
Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
+ + ++ +PD VTY T++SA G M+ A +++ M G TYN ++ G C+
Sbjct: 258 LSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCK 317
Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
+ ++AKE+ EM + PD +Y L+ D F++MR+R + P +
Sbjct: 318 HGKYERAKEVFAEMLRSG-LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLV 376
Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
++++M F S A F+ +++ + D V + +L++GYCR G++ A +
Sbjct: 377 CFSSMMSLFTRSGNLDKALMYFNS-VKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNE 435
Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
M + G +V TY ++ +G+ + GEA L+ E+ ER L PD
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER----------------ALFPD 479
Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY----------------KKIYV 522
L L D + + A+E+ M+E I + Y K+I+
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539
Query: 523 EMHSR-MFTSKHASQARQDRRRERKRAAEAFKFW 555
+M S+ + + + + + AEAF+ W
Sbjct: 540 DMVSKEILPTPISYSILVNALCSKGHLAEAFRVW 573
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 50/324 (15%)
Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVP----------------ANRI 287
N H ++ + ++ LV++G + A+ L M R GV +N
Sbjct: 108 NFKHTS-LSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDS 166
Query: 288 TYNILLKGYCQQLQIDKAKE---LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
+++L++ Y Q ++ +A E LLR I+ + N LI + I A
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSID----ACNALIGSLVRIGWVELAWGV 222
Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLAN-KVFDEMLRDPRVKVDIVAWNMLVEGY 403
+ E+ G+ YT + AL K+ F +++ V DIV +N L+ Y
Sbjct: 223 YQEISRSGVGIN--VYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAY 280
Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE---------- 453
GL+EEA ++ M GF P V TY ++ NG+ K A ++ E
Sbjct: 281 SSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDS 340
Query: 454 ------IKERCE----VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
+ E C+ V+ E V +D + PD ++ + R+ KAL
Sbjct: 341 TTYRSLLMEACKKGDVVETEKVFSDMR-SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 399
Query: 504 CMEEHGIPPNKTKYKKIYVEMHSR 527
++E G+ P+ Y I ++ + R
Sbjct: 400 SVKEAGLIPDNVIY-TILIQGYCR 422
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 197/407 (48%), Gaps = 27/407 (6%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P + +LN A + K + L D + G D+ T N+++ ++S+ +L
Sbjct: 70 PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
L +++++G + TF SL+ + +E A ++V M E + DV +D
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIID---- 185
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
S G + +F+++ I P + +YT+L+ G N GR D
Sbjct: 186 SLCKNGHVNYALSLFDQMENYGIRP-------------DVVMYTSLVNGLCNSGRWRDAD 232
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
+L M +++ PD +T+ ++ A VK G A ++ EM R+ + N TY L+
Sbjct: 233 SLLRGMTKRK---IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLI 289
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
G+C + +D+A+++ M PDVV+Y LI+GF A+ F EM +G+
Sbjct: 290 NGFCMEGCVDEARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGL 348
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
I+YTTL++ F +P +A +VF M+ V +I +N+L+ C G V++A
Sbjct: 349 TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRG-VPPNIRTYNVLLHCLCYNGKVKKAL 407
Query: 414 RIIERMKE---NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
I E M++ +G PN+ TY L +G+ K +AL++++++++R
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKR 454
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 198/407 (48%), Gaps = 27/407 (6%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD + +++N + ++ + + +QM E G KPDV+ Y +I + + +
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALS 198
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLED 172
+ +++ GI + + SLV G A+++++ M R+ + DV +D
Sbjct: 199 LFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALID--- 255
Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
+ EG D +E++ +++ SI APN YT+L+ G+ EG V +
Sbjct: 256 -AFVKEGKFLDAEELYNEMIRMSI-------------APNIFTYTSLINGFCMEGCVDEA 301
Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
+M M E PD V YT++++ K +D A ++ EM++ G+ N ITY L
Sbjct: 302 RQMFYLM---ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358
Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR- 351
++G+ Q + + A+E+ M + P++ +YN+L+ AL F +M+ R
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRG-VPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417
Query: 352 --GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
G+AP +Y L+ + + + A VF++M R + + I+ + ++++G C+ G V
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM-RKREMDIGIITYTIIIQGMCKAGKV 476
Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
+ A + + G PNV TY ++ +G+ EA +L++++KE
Sbjct: 477 KNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 144/355 (40%), Gaps = 56/355 (15%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
KPD Y ++++ G L LFDQM +G +PDV+ Y ++ + R
Sbjct: 174 KPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADS 233
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-------------------- 154
+L + + I + TF +L+ A+V G AE + M
Sbjct: 234 LLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC 293
Query: 155 REGRRDVCKIIREL--------DLEDYSSENEG-----DDDDDDEVF-----EKLLPNSI 196
EG D + + L D+ Y+S G DD ++F + L N+I
Sbjct: 294 MEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTI 353
Query: 197 NPSS---------EPPLLPKTFA--------PNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
++ +P + + F+ PN R Y L+ G+V + + M
Sbjct: 354 TYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM 413
Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
+++E + P+ TY ++ L G +++A V +M + + ITY I+++G C+
Sbjct: 414 QKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKA 473
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
++ A L + ++P+VV+Y +I G A F +M+ G++
Sbjct: 474 GKVKNAVNLFCSLPSKG-VKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 17/203 (8%)
Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
+ D+ + N+L++ F A +F +M G P +++T+L+ F L ++ + A
Sbjct: 103 VSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAM 162
Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
+ ++M+ + +K D+V + +++ C+ G V A + ++M+ G P+V Y SL NG
Sbjct: 163 SMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221
Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
+ + + +A L + + +R +KPD +AL D V+ F
Sbjct: 222 LCNSGRWRDADSLLRGMTKR----------------KIKPDVITFNALIDAFVKEGKFLD 265
Query: 498 ALEIVACMEEHGIPPNKTKYKKI 520
A E+ M I PN Y +
Sbjct: 266 AEELYNEMIRMSIAPNIFTYTSL 288
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
AL F M P+ I +T L+ A + + + D L+ V D+ N+L+
Sbjct: 56 ALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDH-LQIMGVSHDLYTCNLLM 114
Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
+C+ A + +M + GF P++ T+ SL NG L + EA+ + ++ E
Sbjct: 115 NCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM--- 171
Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+KPD + + D + AL + ME +GI P+ Y +
Sbjct: 172 -------------GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSL 218
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/466 (23%), Positives = 211/466 (45%), Gaps = 39/466 (8%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD +++LN + + + L DQM E G KPD T+ +I ++ V
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++++++ G + T+ ++V GD+++A ++ M R +I ++
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC 269
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+ D +F ++ I P N Y +L+ N GR SD R
Sbjct: 270 KYRHVEVAVD--LFTEMETKGIRP-------------NVVTYNSLINCLCNYGRWSDASR 314
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT+ ++ A K G + A ++ EM + + + ITYN+L+
Sbjct: 315 LLSNMLEKKIN---PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLIN 371
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++D+AK++ + M + P++ +YN LI+GF + F EM RG+
Sbjct: 372 GFCMHNRLDEAKQMFKFMVSKDCL-PNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++YTT+++ F + A VF +M+ + RV DI+ +++L+ G C G ++ A
Sbjct: 431 GNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSN-RVPTDIMTYSILLHGLCSYGKLDTALV 489
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
I + ++++ N+ Y ++ G+ A K GEA L+ +
Sbjct: 490 IFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL-------------------S 530
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+KPD + + ++A ++ M+E G PN Y +
Sbjct: 531 IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTL 576
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 196/442 (44%), Gaps = 64/442 (14%)
Query: 21 AASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFL 78
+ASGD + +L D+ V V F D + S P +N +L+A A + K + +
Sbjct: 45 SASGDYREILRNRLSDIIKVDDAVDLFGDM-VKSRPFPSIVEFNKLLSAVAKMNKFELVI 103
Query: 79 QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
L +QM G D+ TY++ I R S+ L + VL +++++G + T SL+ Y
Sbjct: 104 SLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGY 163
Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
+ A +V M E
Sbjct: 164 CHSKRISDAVALVDQMVE------------------------------------------ 181
Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
+ P++ +TTL+ G + S+ V ++ M ++ PD VTY TVV
Sbjct: 182 --------MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR---GCQPDLVTYGTVV 230
Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
+ L K G +D A +L +M + AN + +N ++ C+ ++ A +L EM + I
Sbjct: 231 NGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM-ETKGI 289
Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
P+VV+YN LI+ + A + M + I P +++ L+ AF + A K
Sbjct: 290 RPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEK 349
Query: 379 VFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
+ +EM++ DP D + +N+L+ G+C ++EAK++ + M PN+ TY +L
Sbjct: 350 LHEEMIQRSIDP----DTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLI 405
Query: 436 NGISLARKPGEALLLWKEIKER 457
NG ++ + + L++E+ +R
Sbjct: 406 NGFCKCKRVEDGVELFREMSQR 427
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/434 (23%), Positives = 174/434 (40%), Gaps = 71/434 (16%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M++ G P + + TVV+ L GD D+ + + K I K +
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGD---------IDLALNLLNKMEAARI----KANVVI 260
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+N ++++ + + LF +M G +P+V+TYN +I R +L +L
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
E I + TF +L+ A+ G L AE + + M + D I L + + N D
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
+ F ++ K PN + Y TL+ G+ RV D V + R
Sbjct: 381 EAKQMFKF---------------MVSKDCLPNIQTYNTLINGFCKCKRVEDGVELF---R 422
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
+ VTYTT++ +AG D A+ V +M VP + +TY+ILL G C
Sbjct: 423 EMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYG 482
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
++D A + + + +++E ++ YN +I+G A F + I P ++Y
Sbjct: 483 KLDTALVIFKYL-QKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTY 538
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
N ++ G C L++EA + +MK
Sbjct: 539 ------------------------------------NTMISGLCSKRLLQEADDLFRKMK 562
Query: 421 ENGFYPNVATYGSL 434
E+G PN TY +L
Sbjct: 563 EDGTLPNSGTYNTL 576
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 27/243 (11%)
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
+++D A +L +M ++ P +V +N L+ ++ ++ +M+ GI+ +
Sbjct: 62 IKVDDAVDLFGDMVK-SRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYT 120
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
Y+ + F SQ LA V +M++ +P DIV + L+ GYC + +A ++
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEP----DIVTLSSLLNGYCHSKRISDAVALV 176
Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CE---------VKKEGVN 466
++M E G+ P+ T+ +L +G+ L K EA+ L ++ +R C+ V
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 467 ADSDLPPPL---------KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
D DL L K + + + + D + A+++ ME GI PN Y
Sbjct: 237 GDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY 296
Query: 518 KKI 520
+
Sbjct: 297 NSL 299
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 37/334 (11%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
ML P+V ++ ++ G VE+ KL + +++R PDT
Sbjct: 319 MLEKKINPNVVTFNALIDAFFKEGK--LVEAEKLHEEMIQR-----------SIDPDTIT 365
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN ++N + + Q+F M P++ TYN +I + R V + +
Sbjct: 366 YNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
+ G+ T+ +++ + GD + A+ + + M R + + L S G
Sbjct: 426 QRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSY--GK 483
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
D +F+ L SE L N IY T+++G G+V + + ++
Sbjct: 484 LDTALVIFKYL------QKSEMEL-------NIFIYNTMIEGMCKAGKVGEAWDLFCSL- 529
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
+ PD VTY T++S L + A + +M G N TYN L++ +
Sbjct: 530 -----SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDC 584
Query: 301 QIDKAKELLREMADDAKI-EPDVVSY--NILIDG 331
+ EL++EM + + +S N+L DG
Sbjct: 585 DRAASAELIKEMRSSGFVGDASTISLVTNMLHDG 618
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 199/434 (45%), Gaps = 49/434 (11%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PDT ++ ++N G+ + L+L D+M E G KP ++T N ++ + V
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++R++E G T+ ++ G +A +++ M E R + +LD YS
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE--RKI-----KLDAVKYS 251
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+G D L N+ N +E + K F + IYTTL++G+ GR D +
Sbjct: 252 IIIDGLCKDGS------LDNAFNLFNEMEI--KGFKADIIIYTTLIRGFCYAGRWDDGAK 303
Query: 235 ML-------------------------GAMRRQED-------NASHPDHVTYTTVVSALV 262
+L G +R E+ PD VTYT+++
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363
Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
K +D+A +L M G N T+NIL+ GYC+ ID EL R+M+ + D
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVV-ADT 422
Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
V+YN LI GF + A F EM +R + P +SY L+ + +P+ A ++F E
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF-E 481
Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
+ ++++DI +N+++ G C V++A + + G P+V TY + G+
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Query: 443 KPGEALLLWKEIKE 456
EA LL+++++E
Sbjct: 542 SLSEADLLFRKMEE 555
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 44/309 (14%)
Query: 195 SINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254
S+ S+ ++ + P++ ++TL+ G EGRVS+ + ++ R + P +T
Sbjct: 124 SLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVD---RMVEMGHKPTLITL 180
Query: 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314
+V+ L G + A ++ M G N +TY +LK C+ Q A ELLR+M +
Sbjct: 181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM-E 239
Query: 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374
+ KI+ D V Y+I+IDG A FNEM +G I YTTL++ F + +
Sbjct: 240 ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWD 299
Query: 375 LANKVFDEMLR--------------DPRVKV--------------------DIVAWNMLV 400
K+ +M++ D VK D V + L+
Sbjct: 300 DGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359
Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
+G+C+ +++A +++ M G PN+ T+ L NG A + L L++++ R
Sbjct: 360 DGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR--- 416
Query: 461 KKEGVNADS 469
GV AD+
Sbjct: 417 ---GVVADT 422
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 2/190 (1%)
Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
D A + EMTR I ++ L + Q D +L ++M + I ++ + +I
Sbjct: 54 DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQM-ELKGIAHNLYTLSI 112
Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
+I+ + A + ++ G P ++++TL+ L + A ++ D M+
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172
Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
K ++ N LV G C G V +A +I+RM E GF PN TYG + + + + A
Sbjct: 173 H-KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231
Query: 448 LLLWKEIKER 457
+ L ++++ER
Sbjct: 232 MELLRKMEER 241
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/442 (26%), Positives = 198/442 (44%), Gaps = 64/442 (14%)
Query: 21 AASGDDGPVESVKLFDV--VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFL 78
+ASGD + +L D+ V V F D + S P +N +L+A A + K + +
Sbjct: 45 SASGDYREILRNRLSDIIKVDDAVDLFGDM-VKSRPFPSIVEFNKLLSAVAKMNKFELVI 103
Query: 79 QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138
L +QM G D+ TY++ I R S+ L + VL +++++G + T SL+ Y
Sbjct: 104 SLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGY 163
Query: 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198
+ A +V M E
Sbjct: 164 CHSKRISDAVALVDQMVE------------------------------------------ 181
Query: 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258
+ P++ +TTL+ G + S+ V ++ M ++ PD VTY TVV
Sbjct: 182 --------MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR---GCQPDLVTYGTVV 230
Query: 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
+ L K G +D A +L +M + + A+ + YN ++ G C+ +D A L EM D+ I
Sbjct: 231 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM-DNKGI 289
Query: 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378
PDV +Y+ LI + A ++M R I P ++++ L+ AF + A K
Sbjct: 290 RPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 349
Query: 379 VFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435
++DEM++ DP DI ++ L+ G+C ++EAK + E M +PNV TY +L
Sbjct: 350 LYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLI 405
Query: 436 NGISLARKPGEALLLWKEIKER 457
G A++ E + L++E+ +R
Sbjct: 406 KGFCKAKRVEEGMELFREMSQR 427
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/436 (24%), Positives = 196/436 (44%), Gaps = 53/436 (12%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD +++LN + + + L DQM E G KPD T+ +I ++ V
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++++++ G + T+ ++V GD+++A ++++ M +G+ + +I ++
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 269
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
DD ++N +E + K P+ Y++L+ N GR SD R
Sbjct: 270 KYKHMDD-------------ALNLFTE--MDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT++ ++ A VK G + A ++ EM + + + TY+ L+
Sbjct: 315 LLSDMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++D+AK + E+ P+VV+Y+ LI GF + F EM RG+
Sbjct: 372 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLV 430
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM------------------------------- 383
++YTTL+ F + A VF +M
Sbjct: 431 GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVV 490
Query: 384 ---LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
L+ ++ DI +N+++EG C+ G VE+ + + G PNV Y ++ +G
Sbjct: 491 FEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCR 550
Query: 441 ARKPGEALLLWKEIKE 456
EA L K++KE
Sbjct: 551 KGSKEEADSLLKKMKE 566
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 192/441 (43%), Gaps = 43/441 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M++ G P + + TVV+ L GD D+ + ++K I + D
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGD---------IDLALSLLKKMEKGKI----EADVVI 260
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN +++ L LF +M G +PDV TY+ +I R +L ++
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
E I + TF +L+ A+V G L AE + M + D D+ YSS G
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-------DIFTYSSLINGF 373
Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
D+ +FE ++ K PN Y+TL+KG+ RV + + +
Sbjct: 374 CMHDRLDEAKHMFE-------------LMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
R + VTYTT++ +A D A+ V +M +GV N +TYNILL G
Sbjct: 421 F---REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDG 477
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C+ ++ KA ++ E + +EPD+ +YNI+I+G F + +G++P
Sbjct: 478 LCKNGKLAKAM-VVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSP 536
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
I+Y T++ F + A+ + +M D + + +N L+ R G E + +
Sbjct: 537 NVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLP-NSGTYNTLIRARLRDGDREASAEL 595
Query: 416 IERMKENGFYPNVATYGSLAN 436
I+ M+ GF + +T G + N
Sbjct: 596 IKEMRSCGFAGDASTIGLVTN 616
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 110/456 (24%), Positives = 211/456 (46%), Gaps = 33/456 (7%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
+++ GY P+ +ST+++ L G E+++L D +V+ KPD
Sbjct: 149 IIKLGYEPNTITFSTLINGLCLEGR--VSEALELVDRMVEM-----------GHKPDLIT 195
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
N ++N GK + + L D+M E+G +P+ +TY ++ + ++ + L + +L ++
Sbjct: 196 INTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME 255
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
E I L + ++ G L+ A + M I + + + N G
Sbjct: 256 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC--NAGR 313
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
DD ++ ++ INP N ++ L+ ++ EG++ + + M
Sbjct: 314 WDDGAKLLRDMIKRKINP-------------NVVTFSVLIDSFVKEGKLREAEELHKEMI 360
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
+ PD +TYT+++ K +D+A Q++ M G N T+NIL+ GYC+
Sbjct: 361 HR---GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
+ID EL R+M+ + D V+YN LI GF + A F EM +R + P ++Y
Sbjct: 418 RIDDGLELFRKMSLRGVV-ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
L+ + + + A ++F E + ++++DI +N+++ G C V++A + +
Sbjct: 477 KILLDGLCDNGESEKALEIF-EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 535
Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
G P V TY + G+ EA LL+++++E
Sbjct: 536 LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 191/435 (43%), Gaps = 38/435 (8%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P ++ + +A A + L L QM G ++ T ++MI R + L
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
+ +I+++G TF +L+ G + A +V M E + + DL ++
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE-------MGHKPDLITINT 198
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
G E LL + ++ PN+ Y ++ G+ + + +
Sbjct: 199 LVNGLCLSGKEAEAMLLIDK--------MVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 250
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
L R+ E+ D V Y+ ++ L K GS+D A + EM G+ N ITYNIL+ G
Sbjct: 251 L---RKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
+C + D +LLR+M KI P+VV++++LID F+ A EM RGIAP
Sbjct: 308 FCNAGRWDDGAKLLRDMI-KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 366
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
I+YT+L+ F + AN++ D M+ DP ++ +N+L+ GYC+ +++
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIR----TFNILINGYCKANRIDDG 422
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
+ +M G + TY +L G K A L++E+ R +P
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR------------KVP 470
Query: 473 PPLKPDEELLDALAD 487
P + + LLD L D
Sbjct: 471 PNIVTYKILLDGLCD 485
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 18/268 (6%)
Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
T + +++ + + A + ++ ++G N IT++ L+ G C + ++ +A EL+ M
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184
Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
+ +PD+++ N L++G L A A+ ++M G P ++Y ++ S Q
Sbjct: 185 VEMGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 243
Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
LA ++ +M + +K+D V ++++++G C+ G ++ A + M+ G N+ TY
Sbjct: 244 TALAMELLRKM-EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYN 302
Query: 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA 492
L G A + + L +++ +R + P+ L D V+
Sbjct: 303 ILIGGFCNAGRWDDGAKLLRDMIKR----------------KINPNVVTFSVLIDSFVKE 346
Query: 493 AFFRKALEIVACMEEHGIPPNKTKYKKI 520
R+A E+ M GI P+ Y +
Sbjct: 347 GKLREAEELHKEMIHRGIAPDTITYTSL 374
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 124/326 (38%), Gaps = 57/326 (17%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
PDT Y ++++ K Q+ D M G P++ T+N++I +A+R + +
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
++ G+ T+ +L+ + G L +A+ + Q M
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM--------------------- 464
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ + PN Y L+ G + G ++ +
Sbjct: 465 -----------------------------VSRKVPPNIVTYKILLDGLCDNG---ESEKA 492
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
L + E + D Y ++ + A +D A + + GV TYNI++ G
Sbjct: 493 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGG 552
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C++ + +A+ L R+M +D PD +YNILI + D+ ++ E++ G +
Sbjct: 553 LCKKGPLSEAELLFRKMEEDGH-APDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS- 610
Query: 356 TKISYTTLMKAFALSSQPKLANKVFD 381
+ +T+ + S +L D
Sbjct: 611 --VDASTIKMVIDMLSDGRLKKSFLD 634
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 24/237 (10%)
Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346
++Y L+ ++ D A +L R+M + P V+ ++ L L
Sbjct: 54 LSYRERLRSGLVDIKADDAIDLFRDMIHSRPL-PTVIDFSRLFSAIAKTKQYDLVLALCK 112
Query: 347 EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGY 403
+M +GIA + + ++ F + LA ++++ +P + + ++ L+ G
Sbjct: 113 QMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEP----NTITFSTLINGL 168
Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
C G V EA +++RM E G P++ T +L NG+ L+ K EA+LL ++ E
Sbjct: 169 CLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEY------ 222
Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+P+ + ++ ++ A+E++ MEE I + KY I
Sbjct: 223 ----------GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 190/389 (48%), Gaps = 20/389 (5%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD N++LN + + + L DQM E G KPD +T+ +I ++ V
Sbjct: 145 EPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVA 204
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++R+++ G + T+ ++V GD ++A ++ M + + +I ++
Sbjct: 205 LIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLC 264
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
DD ++N +E + K PN Y++L+ N GR SD R
Sbjct: 265 KYRHEDD-------------ALNLFTE--MENKGVRPNVITYSSLISCLCNYGRWSDASR 309
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT++ ++ A VK G + +A ++ EM + + N TY+ L+
Sbjct: 310 LLSDMIERKIN---PNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLIN 366
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++ +AK++L E+ P+VV+YN LI+GF + F EM RG+
Sbjct: 367 GFCMLDRLGEAKQML-ELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLV 425
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++YTTL+ F + A VF +M+ V +I+ +N+L++G C+ G + +A
Sbjct: 426 GNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SVGVHPNILTYNILLDGLCKNGKLAKAMV 484
Query: 415 IIERMKENGFYPNVATYGSLANGISLARK 443
+ E ++ + P++ TY + G+ A K
Sbjct: 485 VFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 179/405 (44%), Gaps = 61/405 (15%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P ++ +L+A A + K + ++M G ++ TYN++I R SR L + +
Sbjct: 76 PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L +++++G + T SL+ + + A +V M E
Sbjct: 136 LGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE------------------- 176
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ P++ +TTL+ G + S+ V +
Sbjct: 177 -------------------------------MGYKPDTVTFTTLIHGLFLHNKASEAVAL 205
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ M ++ PD VTY VV+ L K G D A +L +M + AN + Y+ ++
Sbjct: 206 IDRMVQR---GCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS 262
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C+ D A L EM ++ + P+V++Y+ LI + A ++M R I P
Sbjct: 263 LCKYRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINP 321
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
++++ L+ AF + A K+++EM++ DP +I ++ L+ G+C + + EA
Sbjct: 322 NLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP----NIFTYSSLINGFCMLDRLGEA 377
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
K+++E M PNV TY +L NG A++ + + L++E+ +R
Sbjct: 378 KQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQR 422
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 27/254 (10%)
Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
Y +L+ +++D A L MA ++ P ++ ++ L+ ++ ++F +M
Sbjct: 46 YREVLRTGLSDIELDDAIGLFGVMAQ-SRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKM 104
Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCR 405
GI+ +Y L+ F S+ LA + +M++ +P DIV N L+ G+C
Sbjct: 105 EILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEP----DIVTLNSLLNGFCH 160
Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CE----- 459
+ +A ++++M E G+ P+ T+ +L +G+ L K EA+ L + +R C+
Sbjct: 161 GNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220
Query: 460 ----VKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK---------ALEIVACME 506
V D+DL L E A++ + + AL + ME
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280
Query: 507 EHGIPPNKTKYKKI 520
G+ PN Y +
Sbjct: 281 NKGVRPNVITYSSL 294
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/258 (17%), Positives = 99/258 (38%), Gaps = 66/258 (25%)
Query: 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA 67
P++ +S ++ G V++ KL++ ++KR DP+I + Y++++N
Sbjct: 321 PNLVTFSALIDAFVKKGK--LVKAEKLYEEMIKRS---IDPNIFT--------YSSLING 367
Query: 68 CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127
L + + Q+ + M P+V+TYN +I +A R + + + + G+
Sbjct: 368 FCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLV-- 425
Query: 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187
G+ T++ + R D D+ V
Sbjct: 426 --------------GNTVTYTTLIHGFFQAR---------------------DCDNAQMV 450
Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
F++++ ++ PN Y L+ G G+++ + + ++R +
Sbjct: 451 FKQMVSVGVH-------------PNILTYNILLDGLCKNGKLAKAMVVFEYLQR---STM 494
Query: 248 HPDHVTYTTVVSALVKAG 265
PD TY ++ + KAG
Sbjct: 495 EPDIYTYNIMIEGMCKAG 512
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/493 (26%), Positives = 228/493 (46%), Gaps = 46/493 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
+++ GY P ++T++ L G E+V L D +V+ + +PD
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGK--VSEAVVLVDRMVE-----------NGCQPDVVT 195
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN+++N G L L +M E K DV TY+ +I R + + + +
Sbjct: 196 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME 255
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
GI + T+ SLV G +++ M R V +I L D + EG
Sbjct: 256 TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVK-EGK 313
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
+ +E++++++ I +PN Y TLM GY + R+S+ ML M
Sbjct: 314 LQEANELYKEMITRGI-------------SPNIITYNTLMDGYCMQNRLSEANNMLDLMV 360
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
R N PD VT+T+++ +D +V +++ G+ AN +TY+IL++G+CQ
Sbjct: 361 R---NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
+I A+EL +EM + PDV++Y IL+DG AL F +++ + + Y
Sbjct: 418 KIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
TT+++ + + A +F L VK +++ + +++ G C+ G + EA ++ +M+
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCS-LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535
Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS-------DLPP 473
E+G PN TY +L I + G+ K I+ E+K G +AD+ D+
Sbjct: 536 EDGNAPNDCTYNTL---IRAHLRDGDLTASAKLIE---EMKSCGFSADASSIKMVIDMLL 589
Query: 474 PLKPDEELLDALA 486
+ D+ LD L+
Sbjct: 590 SGELDKSFLDMLS 602
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 124/532 (23%), Positives = 234/532 (43%), Gaps = 60/532 (11%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+RS LP + +S S +A + K F++V+ ++ I +
Sbjct: 79 MIRSRPLPSLVDFSRFFSAIART---------KQFNLVLDFCKQLELNGIAHN----IYT 125
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
N ++N K + ++ + G +PD T+N +IK + V +++R++
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
E G + T+ S+V GD +A +++ M E R+V + D+ YS+
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE--RNV-----KADVFTYSTIIDSL 238
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+G D +F+++ I S Y +L++G G+ +D +
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVT-------------YNSLVRGLCKAGKWNDGALL 285
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
L M +E P+ +T+ ++ VK G + A ++ EM G+ N ITYN L+ G
Sbjct: 286 LKDMVSRE---IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 342
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
YC Q ++ +A +L M + K PD+V++ LI G+ ++ + F + RG+
Sbjct: 343 YCMQNRLSEANNMLDLMVRN-KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVA 401
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
++Y+ L++ F S + KLA ++F EM+ V D++ + +L++G C G +E+A I
Sbjct: 402 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHG-VLPDVMTYGILLDGLCDNGKLEKALEI 460
Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
E ++++ + Y ++ G+ K +A L+ C + +GV
Sbjct: 461 FEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF------CSLPCKGV---------- 504
Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
KP+ + + +A ++ MEE G PN Y + + H R
Sbjct: 505 KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL-IRAHLR 555
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 116/451 (25%), Positives = 200/451 (44%), Gaps = 61/451 (13%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
PD +Y+ V+N G+ K +L + M G KP+ Y +I L R +
Sbjct: 279 PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 338
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
++ GI + +L+ + GD+ A M RD+ D+ Y++
Sbjct: 339 FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS--RDITP-----DVLTYTA 391
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
G D V L + + K P+S +T L+ GY G + D R+
Sbjct: 392 IISGFCQIGDMVEAGKLFHE--------MFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
M + P+ VTYTT++ L K G +D A ++L EM +IG+ N TYN ++ G
Sbjct: 444 HNHMIQA---GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500
Query: 296 -----------------------------------YCQQLQIDKAKELLREMADDAKIEP 320
YC+ ++DKA+E+L+EM ++P
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG-LQP 559
Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
+V++N+L++GF L N M A+GIAP ++ +L+K + + + K A ++
Sbjct: 560 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY 619
Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
+M V D + LV+G+C+ ++EA + + MK GF +V+TY L G
Sbjct: 620 KDMCSRG-VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLK 678
Query: 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
+K EA +E+ + ++++EG+ AD ++
Sbjct: 679 RKKFLEA----REVFD--QMRREGLAADKEI 703
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 185/401 (46%), Gaps = 31/401 (7%)
Query: 80 LFDQMHEFGAKPDVLTYNVMIKLCARASR---KHLLVFVLERILEMGITLCMTTFQSLVA 136
+F + E G +V +YN++I + R H L+ ++E G T + ++ ++V
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMEL---KGYTPDVISYSTVVN 289
Query: 137 AYVGFGDLEIAETIVQAM-REGRRD-----------VCKIIRELDLEDYSSENEGDDDDD 184
Y FG+L+ +++ M R+G + +C+I + + E+ SE
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 185 DEVFEKLLPNSINPSSEPPLLPKTF--------APNSRIYTTLMKGYMNEGRVSDTVRML 236
D V L + + K F P+ YT ++ G+ G + + ++
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409
Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
M + PD VT+T +++ KAG M A +V M + G N +TY L+ G
Sbjct: 410 HEMFCK---GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 466
Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
C++ +D A ELL EM ++P++ +YN +++G + A+ E A G+
Sbjct: 467 CKEGDLDSANELLHEMWKIG-LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525
Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
++YTTLM A+ S + A ++ EML ++ IV +N+L+ G+C G++E+ ++++
Sbjct: 526 TVTYTTLMDAYCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584
Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
M G PN T+ SL + A ++K++ R
Sbjct: 585 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 181/423 (42%), Gaps = 68/423 (16%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+R G LP ++T++ GD ++ KF D PD
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGD-------------IRAASKFFYEMHSRDITPDVLT 388
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y A+++ +G + +LF +M G +PD +T+ +I +A V ++
Sbjct: 389 YTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
+ G + + T+ +L+ +CK EGD
Sbjct: 449 QAGCSPNVVTYTTLIDG-----------------------LCK--------------EGD 471
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
D +E+ ++ + P N Y +++ G G + + V+++G
Sbjct: 472 LDSANELLHEMWKIGLQP-------------NIFTYNSIVNGLCKSGNIEEAVKLVGEFE 518
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
NA D VTYTT++ A K+G MD+A+++L EM G+ +T+N+L+ G+C
Sbjct: 519 AAGLNA---DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
++ ++LL M I P+ ++N L+ + + ++ A + +M +RG+ P +Y
Sbjct: 576 MLEDGEKLLNWMLAKG-IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
L+K + K A +F EM + V + +++L++G+ + EA+ + ++M+
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEM-KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMR 693
Query: 421 ENG 423
G
Sbjct: 694 REG 696
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 189/402 (47%), Gaps = 20/402 (4%)
Query: 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
S PD +Y V+N G K + +M + G PDV+TYN +I +A +
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM 251
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
VL +++ G+ T+ S++ Y G + A ++ MR + + L L DY
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL-LMDY 310
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
+N G + ++F+ + + P Y TL++GY +G + +
Sbjct: 311 LCKN-GRCMEARKIFDSMTKRGLKPEITT-------------YGTLLQGYATKGALVEMH 356
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
+L M R N HPDH ++ ++ A K G +D+A V ++M + G+ N +TY ++
Sbjct: 357 GLLDLMVR---NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
C+ +++ A +M D+ + P + YN LI G + A EM RGI
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
I + +++ + + + K+F+ M+R VK +++ +N L+ GYC G ++EA
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKMDEAM 531
Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
+++ M G PN TY +L NG + +AL+L+KE++
Sbjct: 532 KLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEME 573
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 110/519 (21%), Positives = 233/519 (44%), Gaps = 51/519 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLA-ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
ML G LP V ++++++ L A D +E + + +VK + PD
Sbjct: 222 MLDRGILPDVVTYNSIIAALCKAQAMDKAME---VLNTMVK-----------NGVMPDCM 267
Query: 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
YN++L+ + G+PK+ + +M G +PDV+TY++++ + R + + +
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327
Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
+ G+ +TT+ +L+ Y G L ++ M + + + Y+ +G
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA--KQG 385
Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
D VF K+ +NP N+ Y ++ GRV D + M
Sbjct: 386 KVDQAMLVFSKMRQQGLNP-------------NAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
D P ++ Y +++ L +RA +++ EM G+ N I +N ++ +C++
Sbjct: 433 I---DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 489
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
++ ++++L E+ ++P+V++YN LI+G+ L A+ + M + G+ P ++
Sbjct: 490 GRVIESEKLF-ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
Y+TL+ + S+ + A +F EM V DI+ +N++++G + AK + R+
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607
Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
E+G ++TY + +G+ + +AL +++ + C + LK +
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL---CLMD-------------LKLEA 651
Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
+ + D ++ +A ++ +G+ PN Y+
Sbjct: 652 RTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR 690
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/450 (22%), Positives = 188/450 (41%), Gaps = 70/450 (15%)
Query: 74 PKKFLQLFDQMHEFGA---KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
P + +++M GA PD+ TY ++I C RA R L L +++ G +
Sbjct: 65 PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIA 124
Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
F L+ + +C R D D V +
Sbjct: 125 FTPLL-----------------------KGLCADKRTSDAMDI-------------VLRR 148
Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
+ +E +P F+ Y L+KG +E R + + +L M S PD
Sbjct: 149 M--------TELGCIPNVFS-----YNILLKGLCDENRSQEALELLHMMADDRGGGSPPD 195
Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
V+YTTV++ K G D+A EM G+ + +TYN ++ C+ +DKA E+L
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLN 255
Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370
M + + PD ++YN ++ G+ A+ F +MR+ G+ P ++Y+ LM +
Sbjct: 256 TMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Query: 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430
+ A K+FD M + +K +I + L++GY G + E +++ M NG +P+
Sbjct: 315 GRCMEARKIFDSMTKRG-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490
+ L + K +A+L++ ++++ +G+N P+ A+ I
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQ------QGLN----------PNAVTYGAVIGILC 417
Query: 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
++ A+ M + G+ P Y +
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/441 (22%), Positives = 185/441 (41%), Gaps = 74/441 (16%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M + G P + + T++ A G VE L D++V+ + PD
Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKG--ALVEMHGLLDLMVR-----------NGIHPDHYV 373
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
++ ++ A A GK + + +F +M + G P+ +TY +I + ++ R + E+++
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
+ G++ + SL+ E AE ++ M + R +C + S EG
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHCKEGR 491
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
+ +++FE ++ + P N Y TL+ GY G++ + +++L M
Sbjct: 492 VIESEKLFELMVRIGVKP-------------NVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
P+ VTY+T+++ K M+ A + EM GV + ITYNI+L+G Q
Sbjct: 539 SV---GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTK 357
+ AKEL + + + ++ +YNI++ G L DD AL F +
Sbjct: 596 RTAAAKELYVRITESGT-QIELSTYNIILHGLCKNKLTDD---ALQMFQNL--------- 642
Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
LM +K++ +N++++ ++G +EAK +
Sbjct: 643 ----CLMD-----------------------LKLEARTFNIMIDALLKVGRNDEAKDLFV 675
Query: 418 RMKENGFYPNVATYGSLANGI 438
NG PN TY +A I
Sbjct: 676 AFSSNGLVPNYWTYRLMAENI 696
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 31/301 (10%)
Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
M R + PD TY ++ +AG +D L + + G + I + LLKG C
Sbjct: 75 MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134
Query: 299 QLQIDKAKEL-LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM---RARGIA 354
+ A ++ LR M + I P+V SYNIL+ G + S AL + M R G
Sbjct: 135 DKRTSDAMDIVLRRMTELGCI-PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSP 193
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
P +SYTT++ F A + EML D + D+V +N ++ C+ +++A
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEML-DRGILPDVVTYNSIIAALCKAQAMDKAME 252
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
++ M +NG P+ TY S+ +G + +P EA+ K++ + +GV
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM------RSDGV--------- 297
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY---------KKIYVEMH 525
+PD L D + +A +I M + G+ P T Y K VEMH
Sbjct: 298 -EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356
Query: 526 S 526
Sbjct: 357 G 357
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 120/280 (42%), Gaps = 41/280 (14%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+R G P+V ++T+++ +G E++KL +V KP+T
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMD--EAMKLLSGMVS-----------VGLKPNTVT 548
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y+ ++N + + + L LF +M G PD++TYN++++ + R + RI
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE-- 178
E G + ++T+ ++ G ++ + +Q +++C + +L+ ++ +
Sbjct: 609 ESGTQIELSTYNIILH---GLCKNKLTDDALQMF----QNLCLMDLKLEARTFNIMIDAL 661
Query: 179 ---GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
G +D+ ++F N + PN Y + + + +G + + ++
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGL-------------VPNYWTYRLMAENIIGQGLLEELDQL 708
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
+M EDN D +V L++ G + RA L+
Sbjct: 709 FLSM---EDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745
>sp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980,
mitochondrial OS=Arabidopsis thaliana GN=At1g68980 PE=2
SV=1
Length = 619
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/503 (24%), Positives = 214/503 (42%), Gaps = 74/503 (14%)
Query: 55 KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
KPD A NA L AC + L + M G KPD L++ + L AR + +
Sbjct: 184 KPDLVASNAALEACCRQMESLADAENLIESMDVLGVKPDELSFGFLAYLYARKGLREKIS 243
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
+ + + +G + S+++ YV GDL+ A ++ +C + + +
Sbjct: 244 ELEDLMDGLGFASRRILYSSMISGYVKSGDLDSASDVI---------LCSLKGVGEASSF 294
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
S E Y L++G++ V
Sbjct: 295 SEET--------------------------------------YCELVRGFIESKSVESLA 316
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
+++ ++ E ++ +V+A VK G + +L E+ G Y +L
Sbjct: 317 KLIIEAQKLESMSTDVGGSVGFGIVNACVKLGF--SGKSILDELNAQGGSGGIGVYVPIL 374
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
K YC++ + +A +L+ E++ ++ DV +YN +I+ + D ALT F +MR +
Sbjct: 375 KAYCKEGRTSEATQLVTEISSSG-LQLDVETYNTMIEASMTKHDFLSALTLFRDMRETRV 433
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
A K Y T+M + +P+L + +E++ DPRV+V WN ++ +C+ G + +AK
Sbjct: 434 ADLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSIIHAFCKSGRLGDAK 493
Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
RM + PN TY SL NG K E +++WKE K++
Sbjct: 494 STFRRMTFLQYEPNNQTYLSLINGYVSCEKYFEVVVIWKEFKDK---------------- 537
Query: 474 PLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKH 533
K + L DA + V+ FF AL+++ +E I +K +YK ++E T K+
Sbjct: 538 KAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFME------TQKN 591
Query: 534 ASQARQDRRRERK-RAAEAFKFW 555
+ +R+ +K +AFK W
Sbjct: 592 LRLPKLRKRKMKKIEFLDAFKNW 614
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/466 (24%), Positives = 210/466 (45%), Gaps = 41/466 (8%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN-VMIKLCARASRKHLLVF 114
P++ Y ++++ + + + LQL ++M G PD T+N V++ LC + R +
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC-KFDRINEAAK 308
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
++ R+L G T+ L+ G ++ A+ + + + I + +
Sbjct: 309 MVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE------IVIFNTLIHG 362
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
G DD V ++ + P+ Y +L+ GY EG V +
Sbjct: 363 FVTHGRLDDAKAVLSDMVTS------------YGIVPDVCTYNSLIYGYWKEGLVGLALE 410
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L MR + P+ +YT +V K G +D A VL EM+ G+ N + +N L+
Sbjct: 411 VLHDMRNK---GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS 467
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
+C++ +I +A E+ REM +PDV ++N LI G +D+ AL +M + G+
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKG-CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVV 526
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++Y TL+ AF + K A K+ +EM+ +D + +N L++G CR G V++A+
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS-PLDEITYNSLIKGLCRAGEVDKARS 585
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
+ E+M +G P+ + L NG+ + ++E E +KE V S
Sbjct: 586 LFEKMLRDGHAPSNISCNILINGLCRS----------GMVEEAVEFQKEMVLRGS----- 630
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
PD ++L + RA L + ++ GIPP+ + +
Sbjct: 631 -TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 168/387 (43%), Gaps = 25/387 (6%)
Query: 55 KPDTAAYNAVLNACANLGK---PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
KP+ +N +++ G+ K L D + +G PDV TYN +I + L
Sbjct: 350 KPEIVIFNTLIHGFVTHGRLDDAKAVLS--DMVTSYGIVPDVCTYNSLIYGYWKEGLVGL 407
Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
+ VL + G + ++ LV + G ++ A ++ M + +
Sbjct: 408 ALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS 467
Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
+ E+ +P ++ E P K P+ + +L+ G V +
Sbjct: 468 AFCKEHR-------------IPEAVEIFREMP--RKGCKPDVYTFNSLISGLC---EVDE 509
Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
L +R + VTY T+++A ++ G + AR+++ EM G P + ITYN
Sbjct: 510 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569
Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
L+KG C+ ++DKA+ L +M D P +S NILI+G A+ F EM R
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGH-APSNISCNILINGLCRSGMVEEAVEFQKEMVLR 628
Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
G P +++ +L+ + + + +F + L+ + D V +N L+ C+ G V +
Sbjct: 629 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRK-LQAEGIPPDTVTFNTLMSWLCKGGFVYD 687
Query: 412 AKRIIERMKENGFYPNVATYGSLANGI 438
A +++ E+GF PN T+ L I
Sbjct: 688 ACLLLDEGIEDGFVPNHRTWSILLQSI 714
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 24/317 (7%)
Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
+L + P + +MK + + + +L M + P+ V Y T++ +L K
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKH---GCVPNSVIYQTLIHSLSK 264
Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
++ A Q+L EM +G + T+N ++ G C+ +I++A +++ M PD +
Sbjct: 265 CNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG-FAPDDI 323
Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
+Y L++G I A F R P + + TL+ F + A V +M
Sbjct: 324 TYGYLMNGLCKIGRVDAAKDLF----YRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDM 379
Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
+ + D+ +N L+ GY + GLV A ++ M+ G PNV +Y L +G K
Sbjct: 380 VTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439
Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
EA + E+ +AD LKP+ + L + +A+EI
Sbjct: 440 IDEAYNVLNEM-----------SADG-----LKPNTVGFNCLISAFCKEHRIPEAVEIFR 483
Query: 504 CMEEHGIPPNKTKYKKI 520
M G P+ + +
Sbjct: 484 EMPRKGCKPDVYTFNSL 500
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 33/286 (11%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
KP+T +N +++A + + +++F +M G KPDV T+N +I LC KH L
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL- 514
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLED 172
++L ++ G+ T+ +L+ A++ G+++ A +V M +G LD
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG--------SPLDEIT 566
Query: 173 YSSE-----NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
Y+S G+ D +FEK+L + AP++ L+ G G
Sbjct: 567 YNSLIKGLCRAGEVDKARSLFEKMLRDG-------------HAPSNISCNILINGLCRSG 613
Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
V + V M + S PD VT+ ++++ L +AG ++ + ++ G+P + +
Sbjct: 614 MVEEAVEFQKEMVLR---GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670
Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
T+N L+ C+ + A LL E +D + P+ +++IL+ I
Sbjct: 671 TFNTLMSWLCKGGFVYDACLLLDEGIEDGFV-PNHRTWSILLQSII 715
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 36/221 (16%)
Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
Y ++ L G ++L +M G+ + +++ Y + + L+ EM
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172
Query: 313 ADDAKIEPDVVSYNILID-----------------------------------GFILIDD 337
+ EP SYN++++ F +++
Sbjct: 173 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE 232
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
AL+ +M G P + Y TL+ + + ++ A ++ +EM V D +N
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP-DAETFN 291
Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
++ G C+ + EA +++ RM GF P+ TYG L NG+
Sbjct: 292 DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
MLR G+ P + + +++ L SG +V+ +F ++ S PD
Sbjct: 590 MLRDGHAPSNISCNILINGLCRSG-------------MVEEAVEFQKEMVLRGSTPDIVT 636
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+N+++N G+ + L +F ++ G PD +T+N ++ + + +L+ +
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGI 696
Query: 121 EMGITLCMTTFQSLVAAYV 139
E G T+ L+ + +
Sbjct: 697 EDGFVPNHRTWSILLQSII 715
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ G + + ++T+++ G+ +K RK + + S D
Sbjct: 520 MISEGVVANTVTYNTLINAFLRRGE-------------IKEARKLVNEMVFQGSPLDEIT 566
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
YN+++ G+ K LF++M G P ++ N++I LC + + F E +
Sbjct: 567 YNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMV 626
Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
L G T + TF SL+ G +E T+ + ++
Sbjct: 627 LR-GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 661
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 122/521 (23%), Positives = 223/521 (42%), Gaps = 86/521 (16%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M++ GY P++ S+++ +G S ++ + V D V+ +P+T
Sbjct: 142 MMKLGYEPNIVTLSSLL--------NGYCHSKRISEAVA-----LVDQMFVTGYQPNTVT 188
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
+N +++ K + + L D+M G +PD++TY V++ LC R
Sbjct: 189 FNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR-------------- 234
Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
GD ++A ++ M +G+ + +I ++
Sbjct: 235 ----------------------GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272
Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
DD ++N E + K PN Y++L+ N GR SD R+L M
Sbjct: 273 DD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
++ N PD T++ ++ A VK G + A ++ EM + + + +TY+ L+ G+C
Sbjct: 318 IERKIN---PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
++D+AK++ M PDVV+YN LI GF + F EM RG+ ++
Sbjct: 375 DRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
Y L++ + +A ++F EM+ D V +I+ +N L++G C+ G +E+A + E +
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
+ + P + TY + G+ A K + L+ C + +GV KPD
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF------CNLSLKGV----------KPDV 536
Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+ + R +A + M+E G PN Y +
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTL 577
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 183/436 (41%), Gaps = 42/436 (9%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P ++ +L+A A + K + L +QM G + TY+++I R S+ L + V
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDL 170
L +++++G + T SL+ Y + A +V M + +I L L
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
+ +SE L+ + +P L+ Y ++ G G
Sbjct: 199 HNKASEAMA-----------LIDRMVAKGCQPDLVT---------YGVVVNGLCKRG--- 235
Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
DT + + E P + Y T++ L K MD A + EM G+ N +TY+
Sbjct: 236 DTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYS 295
Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
L+ C + A LL +M + KI PDV +++ LID F+ A ++EM
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMI-ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
R I P+ ++Y++L+ F + + A ++F+ M+ D+V +N L++G+C+ VE
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV-SKHCFPDVVTYNTLIKGFCKYKRVE 413
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
E + M + G N TY L G+ A A ++KE+
Sbjct: 414 EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM------------VSDG 461
Query: 471 LPPPLKPDEELLDALA 486
+PP + LLD L
Sbjct: 462 VPPNIMTYNTLLDGLC 477
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 160/407 (39%), Gaps = 79/407 (19%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ G P + + VV+ L GD D+ + K + +P
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDT---------DLAFNLLNKMEQGKL----EPGVLI 258
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN +++ L LF +M G +P+V+TY+ +I R +L ++
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD--LEDYSSENE 178
E I + TF +L+ A+V G L AE + M + R +D + YSS
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM---------VKRSIDPSIVTYSSLIN 369
Query: 179 G-----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
G D+ ++FE ++ K P+ Y TL+KG+ RV + +
Sbjct: 370 GFCMHDRLDEAKQMFE-------------FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
+ R + VTY ++ L +AG D A+++ EM GVP N +TYN LL
Sbjct: 417 EVF---REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473
Query: 294 KGYCQQLQIDKA-------------------KELLREMADDAKIE--------------- 319
G C+ +++KA ++ M K+E
Sbjct: 474 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533
Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366
PDVV+YN +I GF A F EM+ G P Y TL++A
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 122/239 (51%), Gaps = 5/239 (2%)
Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
L + ++E ++ D V + G M + P + ++ ++SA+ K D + +M
Sbjct: 52 LSRNGLSELKLDDAVALFGEMVKSR---PFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ 108
Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
+G+P N TY+IL+ +C++ Q+ A +L +M EP++V+ + L++G+
Sbjct: 109 NLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMM-KLGYEPNIVTLSSLLNGYCHSKRI 167
Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
+ A+ ++M G P +++ TL+ L ++ A + D M+ + D+V + +
Sbjct: 168 SEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-CQPDLVTYGV 226
Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
+V G C+ G + A ++ +M++ P V Y ++ +G+ + +AL L+KE++ +
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 110/245 (44%), Gaps = 27/245 (11%)
Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
+L++D A L EM ++ P ++ ++ L+ ++ ++ +M+ GI
Sbjct: 58 SELKLDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116
Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
+Y+ L+ F SQ LA V +M++ +P +IV + L+ GYC + EA
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISEAVA 172
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEAL-LLWKEIKERCE-------VKKEGV- 465
++++M G+ PN T+ +L +G+ L K EA+ L+ + + + C+ V G+
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLC 232
Query: 466 -NADSDLP---------PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
D+DL L+P + + + D + AL + ME GI PN
Sbjct: 233 KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV 292
Query: 516 KYKKI 520
Y +
Sbjct: 293 TYSSL 297
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ G P++ ++T++ L +G +E + ++R S +P
Sbjct: 457 MVSDGVPPNIMTYNTLLDGLC---KNGKLEKAMVVFEYLQR----------SKMEPTIYT 503
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN ++ GK + LF + G KPDV+ YN MI R K + + +
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155
E G + +L+ A + GD E + +++ MR
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 119/469 (25%), Positives = 214/469 (45%), Gaps = 43/469 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ G P V ++T+++ L G +E+ L V K V K D+V+
Sbjct: 217 MVEIGLTPVVITFNTLINGLCLEGR--VLEAAAL---VNKMVGKGLHIDVVT-------- 263
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y ++N +G K L L +M E KPDV+ Y+ +I + ++ +L
Sbjct: 264 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 323
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
E GI + T+ ++ + FG A+ +++ M E R++ + + +S EG
Sbjct: 324 EKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE--REINPDVLTFNALISASVKEGK 381
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
+ +++ +++L I P T NS IY G+ R D M M
Sbjct: 382 LFEAEKLCDEMLHRCI--------FPDTVTYNSMIY-----GFCKHNRFDDAKHMFDLM- 427
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
+ PD VT+ T++ +A +D Q+L E++R G+ AN TYN L+ G+C+
Sbjct: 428 ------ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVD 481
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
++ A++L +EM + PD ++ NIL+ GF + AL F ++ I ++Y
Sbjct: 482 NLNAAQDLFQEMISHG-VCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAY 540
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
++ S+ A +F L V+ D+ +N+++ G+C + +A + +MK
Sbjct: 541 NIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMK 599
Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
+NG P+ +TY +L G K GE + K I+ E++ G + D+
Sbjct: 600 DNGHEPDNSTYNTLIRG---CLKAGE---IDKSIELISEMRSNGFSGDA 642
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/516 (23%), Positives = 222/516 (43%), Gaps = 90/516 (17%)
Query: 55 KPDTAAYNAVLN----------ACANLGK--PKKFLQ---LFDQMHEFGAKPDVLTYNVM 99
+PD +N +L+ A A G FL+ LFDQM E G P V+T+N +
Sbjct: 173 QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTL 232
Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
I R ++ +++ G+ + + T+ ++V GD + A ++ M E
Sbjct: 233 INGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 292
Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
+I ++ +G D +F ++L I APN Y +
Sbjct: 293 KPDVVIYSAIIDRLCK--DGHHSDAQYLFSEMLEKGI-------------APNVFTYNCM 337
Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
+ G+ + GR SD R+L M +E N PD +T+ ++SA VK G + A ++ EM
Sbjct: 338 IDGFCSFGRWSDAQRLLRDMIEREIN---PDVLTFNALISASVKEGKLFEAEKLCDEMLH 394
Query: 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID--------- 330
+ + +TYN ++ G+C+ + D AK + MA PDVV++N +ID
Sbjct: 395 RCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-----SPDVVTFNTIIDVYCRAKRVD 449
Query: 331 --------------------------GFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
GF +D+ A F EM + G+ P I+ L+
Sbjct: 450 EGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 509
Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
F + + + A ++F E+++ ++ +D VA+N+++ G C+ V+EA + + +G
Sbjct: 510 YGFCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 568
Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
P+V TY + +G +A +L+ ++K+ +PD +
Sbjct: 569 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGH----------------EPDNSTYNT 612
Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
L C++A K++E+++ M +G + K +
Sbjct: 613 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMV 648
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 122/297 (41%), Gaps = 33/297 (11%)
Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
++ ++ + + ++T++G + +T+N LL G C + +I +A L M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202
Query: 313 ADDAKIE--------------PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
+ +E P V+++N LI+G L A N+M +G+ +
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVV 262
Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
+Y T++ K A + +M + +K D+V ++ +++ C+ G +A+ +
Sbjct: 263 TYGTIVNGMCKMGDTKSALNLLSKM-EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSE 321
Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478
M E G PNV TY + +G + +A L +++ ER + PD
Sbjct: 322 MLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIER----------------EINPD 365
Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM--HSRMFTSKH 533
+AL V+ +A ++ M I P+ Y + H+R +KH
Sbjct: 366 VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 422
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 38/262 (14%)
Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
V+ V+ D A + +M +P N ++NIL+K +C ++ + ++
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT-KL 170
Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
+PDVV++N L+ G L D + AL F M G ++A AL
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG----------FLEAVAL------- 213
Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
FD+M+ V ++ +N L+ G C G V EA ++ +M G + +V TYG++ N
Sbjct: 214 ---FDQMVEIGLTPV-VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269
Query: 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFR 496
G+ AL L +++E +KPD + A+ D +
Sbjct: 270 GMCKMGDTKSALNLLSKMEE----------------THIKPDVVIYSAIIDRLCKDGHHS 313
Query: 497 KALEIVACMEEHGIPPNKTKYK 518
A + + M E GI PN Y
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYN 335
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
A+ FF+ M T + ++ F ++P +A ++ +M R+ ++I ++N+L+
Sbjct: 90 AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKM-EIRRIPLNIYSFNILI 148
Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
+ +C + + ++ + GF P+V T+ +L +G+ L + EAL L+ + E
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVE 204
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 188/401 (46%), Gaps = 28/401 (6%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P N++LN + + + + L DQM E G +PD +T+ ++ + ++ V +
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
+ER++ G + T+ +++ G+ ++A ++ M +G+ + +I ++
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262
Query: 176 ENEGDDDDDDEVFEKLLPNSINPS--SEPPL--------------------LPKTFAPNS 213
DD D +F K+ I P + PL L K P+
Sbjct: 263 YKHMDDAFD--LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDL 320
Query: 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
+ L+ ++ EG++ + ++ M + + PD V Y T++ K ++ +V
Sbjct: 321 VFFNALIDAFVKEGKLVEAEKLYDEMVKSKH--CFPDVVAYNTLIKGFCKYKRVEEGMEV 378
Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
EM++ G+ N +TY L+ G+ Q D A+ + ++M D + PD+++YNIL+DG
Sbjct: 379 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG-VHPDIMTYNILLDGLC 437
Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
+ AL F M+ R + ++YTT+++A + + + +F L VK ++
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCS-LSLKGVKPNV 496
Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
V + ++ G+CR GL EEA + MKE+G PN TY +L
Sbjct: 497 VTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTL 537
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/399 (23%), Positives = 172/399 (43%), Gaps = 54/399 (13%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P ++ +L+A A + K + L +QM G ++ TY++ I R S+ L + +
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L +++++G + T SL+ + + A +V M E
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE------------------- 173
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ P++ +TTL+ G + S+ V +
Sbjct: 174 -------------------------------MGYQPDTVTFTTLVHGLFQHNKASEAVAL 202
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ R PD VTY V++ L K G D A +L +M + + A+ + YN ++ G
Sbjct: 203 V---ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDG 259
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C+ +D A +L +M + I+PDV +YN LI + A ++M + I P
Sbjct: 260 LCKYKHMDDAFDLFNKM-ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINP 318
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
+ + L+ AF + A K++DEM++ D+VA+N L++G+C+ VEE +
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEV 378
Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
M + G N TY +L +G AR A +++K++
Sbjct: 379 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 417
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/453 (23%), Positives = 173/453 (38%), Gaps = 70/453 (15%)
Query: 2 LRSGYLPHVKAWSTV--VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSD------ 53
L G H KA V V R+ G + + + V+ + K +PD+ +
Sbjct: 186 LVHGLFQHNKASEAVALVERMVVKGCQPDLVT---YGAVINGLCKRGEPDLALNLLNKME 242
Query: 54 ---SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
+ D YN +++ LF++M G KPDV TYN +I R
Sbjct: 243 KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWS 302
Query: 111 LLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
+L +LE I + F +L+ A+V G L AE + M +
Sbjct: 303 DASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVK-------------- 348
Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
K P+ Y TL+KG+ RV
Sbjct: 349 -----------------------------------SKHCFPDVVAYNTLIKGFCKYKRVE 373
Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
+ + + R + VTYTT++ +A D A+ V +M GV + +TYN
Sbjct: 374 EGMEVF---REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN 430
Query: 291 ILLKGYCQQLQIDKAKELLREMAD-DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349
ILL G C ++ A + M D K+ D+V+Y +I+ F +
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKL--DIVTYTTMIEALCKAGKVEDGWDLFCSLS 488
Query: 350 ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409
+G+ P ++YTT+M F + A+ +F EM D + + +N L+ R G
Sbjct: 489 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLP-NSGTYNTLIRARLRDGDE 547
Query: 410 EEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
+ +I+ M+ GF + +T+G + N + R
Sbjct: 548 AASAELIKEMRSCGFAGDASTFGLVTNMLHDGR 580
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 112/227 (49%), Gaps = 4/227 (1%)
Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
D V LG + Q SH + TY+ ++ + + A +L +M ++G + +T N
Sbjct: 92 DLVISLGE-QMQNLGISH-NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLN 149
Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
LL G+C +I +A L+ +M + +PD V++ L+ G + ++ A+ M
Sbjct: 150 SLLNGFCHGNRISEAVALVDQMVE-MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVV 208
Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
+G P ++Y ++ +P LA + ++M +++ D+V +N +++G C+ ++
Sbjct: 209 KGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM-EKGKIEADVVIYNTIIDGLCKYKHMD 267
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
+A + +M+ G P+V TY L + + + +A L ++ E+
Sbjct: 268 DAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEK 314
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 116/290 (40%), Gaps = 56/290 (19%)
Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
++ D + + G M + P V ++ ++SA+ K D + +M +G+ N
Sbjct: 55 KLDDAIGLFGDMVKSR---PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 111
Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
TY+I + +C++ Q+ A +L +M P +V+ N L++GF + + A+ ++
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMK-LGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 170
Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
M G P +++TTL V G +
Sbjct: 171 MVEMGYQPDTVTFTTL------------------------------------VHGLFQHN 194
Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
EA ++ERM G P++ TYG++ NG+ +P AL L ++++
Sbjct: 195 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK----------- 243
Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
++ D + + + D + A ++ ME GI P+ Y
Sbjct: 244 -----GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 124/512 (24%), Positives = 212/512 (41%), Gaps = 91/512 (17%)
Query: 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF--- 114
++ ++ V+ + + L K L + G P VL+YN ++ R+ R + F
Sbjct: 134 SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRN--ISFAEN 191
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
V + +LE ++ + T+ L+ + G++++A T+ M
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKME------------------- 232
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
K PN Y TL+ GY ++ D +
Sbjct: 233 -------------------------------TKGCLPNVVTYNTLIDGYCKLRKIDDGFK 261
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L +M + P+ ++Y V++ L + G M VL EM R G + +TYN L+K
Sbjct: 262 LLRSMALK---GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
GYC++ +A + EM + P V++Y LI + A+ F ++MR RG+
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHG-LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
P + +YTTL+ F+ A +V EM D +V +N L+ G+C G +E+A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREM-NDNGFSPSVVTYNALINGHCVTGKMEDAIA 436
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER----------------C 458
++E MKE G P+V +Y ++ +G + EAL + +E+ E+ C
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 459 EVKKEGVNAD---SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
E ++ D L L PDE AL + KAL++ M E G+ P+
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556
Query: 516 KYKKIYVEMHSRMFTSKHASQARQDRRRERKR 547
Y + ++ +Q R RE KR
Sbjct: 557 TYSVLINGLN------------KQSRTREAKR 576
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 200/455 (43%), Gaps = 65/455 (14%)
Query: 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIV------SDSKPDTAAYNAV 64
KA S V A G + + D ++ R S + V S P+ YN +
Sbjct: 152 KALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNIL 211
Query: 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM-G 123
+ G L LFD+M G P+V+TYN +I + RK F L R + + G
Sbjct: 212 IRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL-RKIDDGFKLLRSMALKG 270
Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR-RDVCKIIRELDLEDYSSENEGDDD 182
+ + ++ ++ REGR ++V ++ E++ YS
Sbjct: 271 LEPNLISYNVVINGLC---------------REGRMKEVSFVLTEMNRRGYSL------- 308
Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
DEV Y TL+KGY EG + M M R
Sbjct: 309 --DEV---------------------------TYNTLIKGYCKEGNFHQALVMHAEMLRH 339
Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
P +TYT+++ ++ KAG+M+RA + L +M G+ N TY L+ G+ Q+ +
Sbjct: 340 ---GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396
Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
++A +LREM D+ P VV+YN LI+G + A+ +M+ +G++P +SY+T
Sbjct: 397 NEAYRVLREMNDNG-FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455
Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
++ F S A +V EM+ + +K D + ++ L++G+C +EA + E M
Sbjct: 456 VLSGFCRSYDVDEALRVKREMV-EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514
Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
G P+ TY +L N + +AL L E+ E+
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/470 (23%), Positives = 209/470 (44%), Gaps = 50/470 (10%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAA--SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
M G LP+V ++T++ DDG F ++ K +P+++S
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDG-------FKLLRSMALKGLEPNLIS------ 277
Query: 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
YN V+N G+ K+ + +M+ G D +TYN +IK + H + +
Sbjct: 278 --YNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335
Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
+L G+T + T+ SL+ + G++ A + MR R +C R +
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR--VRGLCPNERTYTTLVDGFSQK 393
Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
G ++ V ++ N F+P+ Y L+ G+ G++ D + +L
Sbjct: 394 GYMNEAYRVLREMNDNG-------------FSPSVVTYNALINGHCVTGKMEDAIAVLED 440
Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
M+ + PD V+Y+TV+S ++ +D A +V EM G+ + ITY+ L++G+C+
Sbjct: 441 MKEK---GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
Q + +A +L EM + PD +Y LI+ + + D AL NEM +G+ P +
Sbjct: 498 QRRTKEACDLYEEML-RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556
Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM--------------LVEGYC 404
+Y+ L+ S+ + A ++ ++ + V D+ + L++G+C
Sbjct: 557 TYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFC 616
Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
G++ EA ++ E M P+ Y + +G A +A L+KE+
Sbjct: 617 MKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 184/381 (48%), Gaps = 28/381 (7%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
+PD + ++LN + + + + LFDQ+ G KP+V+TY +I+ LC H
Sbjct: 150 EPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNH--- 206
Query: 114 FVLERILEMGITLC---MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170
+E +MG + T+ +LV G A +++ M + RR +I L
Sbjct: 207 -AVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMK-RRIEPNVITFTAL 264
Query: 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
D + G + E++ ++ S+ P F S I M G ++E R
Sbjct: 265 ID-AFVKVGKLMEAKELYNVMIQMSV--------YPDVFTYGSLINGLCMYGLLDEAR-- 313
Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
+M M R N +P+ V YTT++ K+ ++ ++ EM++ GV AN ITY
Sbjct: 314 ---QMFYLMER---NGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367
Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
+L++GYC + D A+E+ +M+ + PD+ +YN+L+DG AL F MR
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSR-RAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRK 426
Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
R + ++YT +++ + + A +F + +K +++ + ++ G+CR GL+
Sbjct: 427 REMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLF-SKGMKPNVITYTTMISGFCRRGLIH 485
Query: 411 EAKRIIERMKENGFYPNVATY 431
EA + ++MKE+GF PN + Y
Sbjct: 486 EADSLFKKMKEDGFLPNESVY 506
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 114/466 (24%), Positives = 202/466 (43%), Gaps = 42/466 (9%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P + +L+ A + + + LF+QM G P + T N+++ +S+
Sbjct: 81 PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYS 174
L +++++G + TF SL+ Y + +E A + Q + G + ++ L
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP--NVVTYTTLIRCL 198
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+N + E+F ++ N P N Y L+ G GR D
Sbjct: 199 CKNR-HLNHAVELFNQMGTNGSRP-------------NVVTYNALVTGLCEIGRWGDAAW 244
Query: 235 MLGAM--RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
+L M RR E P+ +T+T ++ A VK G + A+++ M ++ V + TY L
Sbjct: 245 LLRDMMKRRIE-----PNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSL 299
Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
+ G C +D+A+++ M + P+ V Y LI GF + F EM +G
Sbjct: 300 INGLCMYGLLDEARQMFYLMERNG-CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKG 358
Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
+ I+YT L++ + L +P +A +VF++M R DI +N+L++G C G VE+A
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDVAQEVFNQM-SSRRAPPDIRTYNVLLDGLCCNGKVEKA 417
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472
I E M++ N+ TY + G+ K +A L+ C + +G
Sbjct: 418 LMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLF------CSLFSKG-------- 463
Query: 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518
+KP+ + R +A + M+E G PN++ YK
Sbjct: 464 --MKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/473 (24%), Positives = 216/473 (45%), Gaps = 33/473 (6%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P +N +L+A L K + L +M G + D+ T+N++I + L + +
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE-GRR-----------DVCK 163
L ++L++G T SLV + + A ++V M E G + +CK
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202
Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE--------PPLLPKTFAPNSRI 215
R D D+ E E + V L N + SS ++ K PN
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262
Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
Y+ L+ ++ G+V + + M R + PD VTY+++++ L +D A Q+
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRM---SIDPDIVTYSSLINGLCLHDRIDEANQMFD 319
Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
M G A+ ++YN L+ G+C+ +++ +L REM+ + + V+YN LI GF
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV-SNTVTYNTLIQGFFQA 378
Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
D A FF++M GI+P +Y L+ + + + A +F++M + + +DIV
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM-QKREMDLDIVT 437
Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
+ ++ G C+ G VEEA + + G P++ TY ++ +G+ E L+ ++K
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDA------LADICVRAAFFRKALEIV 502
+ +K + +D D+ + +++L L DI ++ +KAL ++
Sbjct: 498 QEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDI--KSGVCKKALSLL 548
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 184/407 (45%), Gaps = 60/407 (14%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
KPD AYNA++++ + F ++ G +P+V+TY ++ +SR
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 246
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+L +++ IT + T+ +L+ A+V G + A+
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK-------------------------- 280
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
E+FE+++ SI+P + Y++L+ G R+ + +
Sbjct: 281 -----------ELFEEMVRMSIDP-------------DIVTYSSLINGLCLHDRIDEANQ 316
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
M M + D V+Y T+++ KA ++ ++ EM++ G+ +N +TYN L++
Sbjct: 317 MFDLMVSK---GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+ Q +DKA+E +M D I PD+ +YNIL+ G + AL F +M+ R +
Sbjct: 374 GFFQAGDVDKAQEFFSQM-DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++YTT+++ + + + A +F L +K DIV + ++ G C GL+ E +
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCS-LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491
Query: 415 IIERMKENGFYPNVATY--GSLANGISLARK---PGEALLLWKEIKE 456
+ +MK+ G N T G + L +K G A L K+IK
Sbjct: 492 LYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKS 538
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 59/223 (26%)
Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
+ ++++ A +L +M ++ P +V +N L+ + + ++ +M GI
Sbjct: 62 RDIKLNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDL 120
Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++ ++ F Q LA + +ML+ +P D V LV G+CR V +A
Sbjct: 121 YTFNIVINCFCCCFQVSLALSILGKMLKLGYEP----DRVTIGSLVNGFCRRNRVSDAVS 176
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
++++M E G+ P++ Y ++ + + C+ K+ VN D
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSL-------------------CKTKR--VNDAFD---- 211
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
FF++ +E GI PN Y
Sbjct: 212 -------------------FFKE-------IERKGIRPNVVTY 228
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 121/464 (26%), Positives = 201/464 (43%), Gaps = 71/464 (15%)
Query: 12 AWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN 70
+ TVV + +SGD DG VK I S +P+ Y ++
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVK--------------EMIASGCRPNVVIYTTLIKTFLQ 464
Query: 71 LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130
+ +++ +M E G PD+ YN +I ++A R L ++E G+ T
Sbjct: 465 NSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT 524
Query: 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEK 190
+ + ++ Y+ + A+ V+ MRE K++ + +Y + + V E
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK--------VIEA 576
Query: 191 LLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250
S+ ++ + +++ YT LM G +V D + MR + PD
Sbjct: 577 C-------SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK---GIAPD 626
Query: 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310
+Y +++ K G+M +A + EM G+ N I YN+LL G+C+ +I+KAKELL
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686
Query: 311 EMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM------ 364
EM+ + P+ V+Y +IDG+ D A A F+EM+ +G+ P YTTL+
Sbjct: 687 EMSVKG-LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRL 745
Query: 365 --------------KAFALSSQP--KLANKVF--------DEMLR-------DPRVKVDI 393
K A S+ P L N VF E+L D K +
Sbjct: 746 NDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPND 805
Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
V +N++++ C+ G +E AK + +M+ P V TY SL NG
Sbjct: 806 VTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 144/325 (44%), Gaps = 54/325 (16%)
Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
PN IYTTL+K ++ R D +R+L M+ Q PD Y +++ L KA MD A
Sbjct: 450 PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ---GIAPDIFCYNSLIIGLSKAKRMDEA 506
Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD---------------- 314
R L EM G+ N TY + GY + + A + ++EM +
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566
Query: 315 ------------------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
D I D +Y +L++G D A F EMR +GIAP
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626
Query: 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416
SY L+ F+ + A+ +FDEM+ + + +++ +NML+ G+CR G +E+AK ++
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEKAKELL 685
Query: 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476
+ M G +PN TY ++ +G + EA L+ E+K + L
Sbjct: 686 DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK----------------GLV 729
Query: 477 PDEELLDALADICVRAAFFRKALEI 501
PD + L D C R +A+ I
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITI 754
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 179/408 (43%), Gaps = 44/408 (10%)
Query: 43 RKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
R D I+ D+K Y ++N K ++F +M G PDV +Y V+I
Sbjct: 581 RSMVDQGILGDAK----TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636
Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA-----ETIVQAMREG 157
++ + + ++E G+T + + L+ + G++E A E V+ +
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696
Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
C II + Y GD + +F++ + K P+S +YT
Sbjct: 697 AVTYCTII-----DGYC--KSGDLAEAFRLFDE-------------MKLKGLVPDSFVYT 736
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
TL+ G V + + G ++ +++ P + +++ + K G + +VL +
Sbjct: 737 TLVDGCCRLNDVERAITIFGTNKKGCASSTAP----FNALINWVFKFGKTELKTEVLNRL 792
Query: 278 T-----RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
R G P N +TYNI++ C++ ++ AKEL +M +A + P V++Y L++G+
Sbjct: 793 MDGSFDRFGKP-NDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITYTSLLNGY 850
Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR----DPR 388
+ A F+E A GI P I Y+ ++ AF A + D+M D
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDG 910
Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
K+ I L+ G+ ++G +E A++++E M + P+ AT L N
Sbjct: 911 CKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 107/462 (23%), Positives = 190/462 (41%), Gaps = 39/462 (8%)
Query: 78 LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137
L+L + M G P TY+V+I + R +L + +G++L T+ L+
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321
Query: 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSIN 197
+ + + A+ +V M ++ + + + S EG + +F+ ++ + +
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMS--KEGVMEKAKALFDGMIASGLI 379
Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257
P ++ Y +L++GY E V +L M+++ S TY TV
Sbjct: 380 PQAQA-------------YASLIEGYCREKNVRQGYELLVEMKKRNIVIS---PYTYGTV 423
Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
V + +G +D A ++ EM G N + Y L+K + Q + A +L+EM +
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG- 482
Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
I PD+ YN LI G A +F EM G+ P +Y + + +S+ A+
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542
Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
K EM R+ V + V L+ YC+ G V EA M + G + TY L NG
Sbjct: 543 KYVKEM-RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Query: 438 ISLARKPGEALLLWKEIKER-------------------CEVKKEGVNADSDLPPPLKPD 478
+ K +A +++E++ + ++K D + L P+
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661
Query: 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+ + L R+ KA E++ M G+ PN Y I
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTI 703
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 26/315 (8%)
Query: 232 TVRMLGAMRRQEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
T+ + GA++ +E P TY ++ L K ++ A+ +L EM +GV + T
Sbjct: 255 TLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHT 314
Query: 289 YNILLKGYCQQLQIDKAKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
Y++L+ G + D AK L+ EM I+P + I + + + A AL F+
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKAL--FDG 372
Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
M A G+ P +Y +L++ + + ++ EM + + + + +V+G C G
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEM-KKRNIVISPYTYGTVVKGMCSSG 431
Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
++ A I++ M +G PNV Y +L + G+A+ + KE+KE+
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ---------- 481
Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI---YVEM 524
+ PD ++L +A +A + M E+G+ PN Y Y+E
Sbjct: 482 ------GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEA 535
Query: 525 HSRMFTSKHASQARQ 539
K+ + R+
Sbjct: 536 SEFASADKYVKEMRE 550
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/350 (19%), Positives = 134/350 (38%), Gaps = 45/350 (12%)
Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
++ L GY+ +G + + V + + E P ++ AL++ +D V
Sbjct: 153 LFGILFDGYIAKGYIEEAVFVFSSSMGLE---LVPRLSRCKVLLDALLRWNRLDLFWDVY 209
Query: 275 AEMTRIGVPANRITYNILLKGYCQ---------------------QLQIDKAKELLREMA 313
M V + TY++L+ +C+ L +D A +L M
Sbjct: 210 KGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMI 269
Query: 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
+ P +Y++LIDG I A + EM + G++ +Y+ L+
Sbjct: 270 CKGLV-PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNA 328
Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
A + EM+ + + ++ + + G++E+AK + + M +G P Y S
Sbjct: 329 DAAKGLVHEMVSHG-INIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387
Query: 434 LANGISLARKPGEALLLWKEIKERCEVKK--------EGVNADSDL-----------PPP 474
L G + + L E+K+R V +G+ + DL
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
+P+ + L ++ + F A+ ++ M+E GI P+ Y + + +
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 119/482 (24%), Positives = 216/482 (44%), Gaps = 80/482 (16%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P A ++ +L+A + + K + L++QM G ++ T N+++ R S+ L +
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 116 LERILEMGITLCMTTFQSLVAAY----------------VGFG---DLEIAETIVQAMRE 156
L +++++G + TF SL+ + VG G ++ I TI+ + +
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198
Query: 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
+ ++ LDL + E +G P+ Y
Sbjct: 199 SK----QVDNALDLLN-RMEKDG-----------------------------IGPDVVTY 224
Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
+L+ G + GR SD RM+ M ++E +PD T+ ++ A VK G + A + E
Sbjct: 225 NSLISGLCSSGRWSDATRMVSCMTKRE---IYPDVFTFNALIDACVKEGRVSEAEEFYEE 281
Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
M R + + +TY++L+ G C ++D+A+E+ M PDVV+Y+ILI+G+
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF-PDVVTYSILINGYCKSK 340
Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
+ F EM RG+ ++YT L++ + + + +A ++F M+ V +I+ +
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVF-CGVHPNIITY 399
Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
N+L+ G C G +E+A I+ M++NG ++ TY + G+ K GE W
Sbjct: 400 NVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMC---KAGEVADAW---DI 453
Query: 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA---AFFRKALEIVACMEEHGIPPN 513
C + +G L P + ++ L +R A FRK M+E GI PN
Sbjct: 454 YCSLNCQG------LMPDIWTYTTMMLGLYKKGLRREADALFRK-------MKEDGILPN 500
Query: 514 KT 515
+
Sbjct: 501 EC 502
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 175/375 (46%), Gaps = 24/375 (6%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+P + ++LN + L +FDQM G KP+V+ YN +I ++ + +
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALD 207
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRDVCKIIRELDLED 172
+L R+ + GI + T+ SL++ G A +V M RE DV +D
Sbjct: 208 LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALID--- 264
Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
+ EG + +E +E+++ S++P + Y+ L+ G R+ +
Sbjct: 265 -ACVKEGRVSEAEEFYEEMIRRSLDP-------------DIVTYSLLIYGLCMYSRLDEA 310
Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
M G M + PD VTY+ +++ K+ ++ ++ EM++ GV N +TY IL
Sbjct: 311 EEMFGFMVSK---GCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTIL 367
Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
++GYC+ +++ A+E+ R M + P++++YN+L+ G AL +M+ G
Sbjct: 368 IQGYCRAGKLNVAEEIFRRMV-FCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNG 426
Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
+ ++Y +++ + + A ++ L + DI + ++ G + GL EA
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCS-LNCQGLMPDIWTYTTMMLGLYKKGLRREA 485
Query: 413 KRIIERMKENGFYPN 427
+ +MKE+G PN
Sbjct: 486 DALFRKMKEDGILPN 500
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 153/386 (39%), Gaps = 67/386 (17%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ GY P+V ++T++ L S K D + + + I PD
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKS---------KQVDNALDLLNRMEKDGI----GPDVVT 223
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN++++ + G+ ++ M + PDV T+N +I C + R E ++
Sbjct: 224 YNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
+ + T+ L+ + L+ AE + M
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM-------------------------- 317
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
+ K P+ Y+ L+ GY +V +++ M
Sbjct: 318 ------------------------VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
++ + VTYT ++ +AG ++ A ++ M GV N ITYN+LL G C
Sbjct: 354 QR---GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNG 410
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
+I+KA +L +M + ++ D+V+YNI+I G + A A + + +G+ P +Y
Sbjct: 411 KIEKALVILADMQKNG-MDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRD 386
TT+M + A+ +F +M D
Sbjct: 470 TTMMLGLYKKGLRREADALFRKMKED 495
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 19/213 (8%)
Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
I ++ + NIL++ F + AL+F +M G P+ +++ +L+ F + A
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDAL 171
Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
+FD+M+ K ++V +N +++G C+ V+ A ++ RM+++G P+V TY SL +G
Sbjct: 172 YMFDQMV-GMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG 230
Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
+ + + +A + C K+E + PD +AL D CV+ +
Sbjct: 231 LCSSGRWSDATRMVS-----CMTKRE-----------IYPDVFTFNALIDACVKEGRVSE 274
Query: 498 ALEIVACMEEHGIPPNKTKYK-KIY-VEMHSRM 528
A E M + P+ Y IY + M+SR+
Sbjct: 275 AEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRL 307
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPRV 389
F+ +DDS FF+ ++ R + P+ ++ L+ A + + + ++++M L P
Sbjct: 59 FMKLDDSLD--LFFHMVQCRPL-PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPH- 114
Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449
++ N+L+ +CR + A + +M + G P++ T+GSL NG + +AL
Sbjct: 115 --NLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALY 172
Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
++ D + KP+ + + + D ++ AL+++ ME+ G
Sbjct: 173 MF----------------DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG 216
Query: 510 IPPNKTKYKKI 520
I P+ Y +
Sbjct: 217 IGPDVVTYNSL 227
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 194/414 (46%), Gaps = 26/414 (6%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+P +++LN + + + L DQM E G +PD +T+ +I ++ V
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++R+++ G + T+ +V GD+++A ++ M + + +I ++
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLC 271
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
DD ++N +E + K PN Y++L+ N R SD R
Sbjct: 272 KYRHEDD-------------ALNLFTE--MENKGVRPNVITYSSLISCLCNYERWSDASR 316
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT+ ++ A VK G + A ++ EM + + + TY+ L+
Sbjct: 317 LLSDMIERKIN---PNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 373
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++D+AK + E+ P+VV+YN LI+GF + F EM RG+
Sbjct: 374 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLV 432
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++YTTL+ F + A VF +M+ D V +I+ +N L++G C+ G +E+A
Sbjct: 433 GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMV 491
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
+ E ++ + P + TY + G+ A K + L+ C + +GV D
Sbjct: 492 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF------CSLSLKGVKPD 539
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 180/405 (44%), Gaps = 61/405 (15%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P +N +L+A A + K + L ++M G ++ TYN++I R S+ L + +
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L +++++G + T SL+ Y + A +V M E
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE------------------- 183
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ P++ +TTL+ G + S+ V +
Sbjct: 184 -------------------------------MGYRPDTITFTTLIHGLFLHNKASEAVAL 212
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ M ++ P+ VTY VV+ L K G +D A +L +M + AN + Y+ ++
Sbjct: 213 VDRMVQR---GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDS 269
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C+ D A L EM ++ + P+V++Y+ LI + + A ++M R I P
Sbjct: 270 LCKYRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINP 328
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
+++ L+ AF + A K++DEM++ DP DI ++ L+ G+C ++EA
Sbjct: 329 NVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEA 384
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
K + E M +PNV TY +L NG A++ E + L++E+ +R
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR 429
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/430 (22%), Positives = 186/430 (43%), Gaps = 68/430 (15%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M++ G P++ + VV+ L GD D+ + K I + +
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGD---------IDLAFNLLNKMEAAKI----EANVVI 262
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y+ V+++ L LF +M G +P+V+TY+ +I R +L ++
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
E I + TF +L+ A+V G L AE
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAE-------------------------------- 350
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
+++++++ SI+P + Y++L+ G+ R+ + M M
Sbjct: 351 -----KLYDEMIKRSIDP-------------DIFTYSSLINGFCMHDRLDEAKHMFELMI 392
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
++ P+ VTY T+++ KA +D ++ EM++ G+ N +TY L+ G+ Q
Sbjct: 393 SKD---CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQAR 449
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
D A+ + ++M D + P++++YN L+DG A+ F ++ + PT +Y
Sbjct: 450 DCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 508
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
+++ + + + +F L VK D++ +N ++ G+CR GL EEA + +M+
Sbjct: 509 NIMIEGMCKAGKVEDGWDLFCS-LSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMR 567
Query: 421 ENGFYPNVAT 430
E+G P+ T
Sbjct: 568 EDGPLPDSGT 577
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
+DD+ G F M P+ + L+ A A + L + ++M R + ++
Sbjct: 66 LDDAIG---LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQR-LGISHNLY 121
Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
+N+L+ +CR + A ++ +M + G+ P++ T SL NG ++ +A+ L ++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 455 KE 456
E
Sbjct: 182 VE 183
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 120/484 (24%), Positives = 212/484 (43%), Gaps = 86/484 (17%)
Query: 38 VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQ---LFDQMHEFGAKPDVL 94
+VKRV F P+ YNA++++ L K +KF + LFD+M + G +P+ +
Sbjct: 354 LVKRVVDFG-------VSPNLFVYNALIDS---LCKGRKFHEAELLFDRMGKIGLRPNDV 403
Query: 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
TY+++I + R + + L +++ G+ L + + SL+ + FGD+ AE + M
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463
Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
IN EP ++
Sbjct: 464 -----------------------------------------INKKLEPTVVT-------- 474
Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
YT+LM GY ++G+++ +R+ M + P T+TT++S L +AG + A ++
Sbjct: 475 -YTSLMGGYCSKGKINKALRLYHEMTGK---GIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530
Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
EM V NR+TYN++++GYC++ + KA E L+EM + I PD SY LI G L
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG-IVPDTYSYRPLIHGLCL 589
Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
++ A F + + +I YT L+ F + + A V EM++ V +D+V
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRG-VDLDLV 648
Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK-E 453
+ +L++G + + +++ M + G P+ Y S+ + S EA +W
Sbjct: 649 CYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLM 708
Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
I E C P+E A+ + +A F +A + + M+ PN
Sbjct: 709 INEGC-----------------VPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPN 751
Query: 514 KTKY 517
+ Y
Sbjct: 752 QVTY 755
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/529 (23%), Positives = 220/529 (41%), Gaps = 81/529 (15%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVV--VKRVRKFS------DPDIVS 52
+L G K W V + +G D + V +V + +V++F D +
Sbjct: 267 VLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCL 326
Query: 53 DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
P AA ++++ GK ++ L L ++ +FG P++ YN +I + + H
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386
Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
+ +R+ ++G+ T+ L+ + G L+ A + +
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFL--------------------- 425
Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
E+ + L S+ P Y +L+ G+ G +S
Sbjct: 426 ------------GEMVDTGLKLSVYP-----------------YNSLINGHCKFGDISAA 456
Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
G M + P VTYT+++ G +++A ++ EMT G+ + T+ L
Sbjct: 457 E---GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTL 513
Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
L G + I A +L EMA+ ++P+ V+YN++I+G+ D + A F EM +G
Sbjct: 514 LSGLFRAGLIRDAVKLFNEMAE-WNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG 572
Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
I P SY L+ L+ Q A KVF + L +++ + + L+ G+CR G +EEA
Sbjct: 573 IVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEA 631
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALL-LWKEIKERCEVKKEGVNADSDL 471
+ + M + G ++ YG L +G SL K + L KE+ +R
Sbjct: 632 LSVCQEMVQRGVDLDLVCYGVLIDG-SLKHKDRKLFFGLLKEMHDR-------------- 676
Query: 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
LKPD+ + ++ D + F++A I M G PN+ Y +
Sbjct: 677 --GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAV 723
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 4/236 (1%)
Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
+ L++ Y+ RV D V + M + + P+ T + ++ LVK A ++
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKV--SLLPEVRTLSALLHGLVKFRHFGLAMELFN 216
Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
+M +G+ + Y +++ C+ + +AKE++ M + + ++V YN+LIDG
Sbjct: 217 DMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM-EATGCDVNIVPYNVLIDGLCKK 275
Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
A+ ++ + + P ++Y TL+ + ++ ++ DEML R A
Sbjct: 276 QKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEML-CLRFSPSEAA 334
Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451
+ LVEG + G +EEA +++R+ + G PN+ Y +L + + RK EA LL+
Sbjct: 335 VSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLF 390
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 111/231 (48%), Gaps = 13/231 (5%)
Query: 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLG-AMRRQEDNAS---HPDHVTYTTVVSALVK 263
+ P R + L+ G + R G AM D S PD YT V+ +L +
Sbjct: 187 SLLPEVRTLSALLHGLVK-------FRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCE 239
Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
+ RA++++A M G N + YN+L+ G C++ ++ +A + +++A ++PDVV
Sbjct: 240 LKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGK-DLKPDVV 298
Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
+Y L+ G + + L +EM +P++ + ++L++ + + A + +
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358
Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
+ D V ++ +N L++ C+ EA+ + +RM + G PN TY L
Sbjct: 359 V-DFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSIL 408
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 21/258 (8%)
Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
+++L++ Y + ++ + + M + P+V + + L+ G + A+ FN+M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218
Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
+ GI P YT ++++ A ++ M V+IV +N+L++G C+
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM-EATGCDVNIVPYNVLIDGLCKKQK 277
Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANG-----------------ISLARKPGEALL-- 449
V EA I + + P+V TY +L G + L P EA +
Sbjct: 278 VWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSS 337
Query: 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
L + +++R ++++ + + P+ + +AL D + F +A + M + G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397
Query: 510 IPPNKTKYKKIYVEMHSR 527
+ PN Y I ++M R
Sbjct: 398 LRPNDVTY-SILIDMFCR 414
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107
PD Y ++N KK ++L++ M E G +PD + YN +I C A
Sbjct: 820 PDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAG 871
Score = 32.7 bits (73), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCAR 105
+TA YN ++ G+ ++ +L +M G PD +TY MI +LC R
Sbjct: 786 NTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRR 835
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 185/439 (42%), Gaps = 78/439 (17%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ G P + + TVV+ L GD D+ + ++K I + D
Sbjct: 211 MVARGCQPDLFTYGTVVNGLCKRGD---------IDLALSLLKKMEKGKI----EADVVI 257
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y +++A N L LF +M G +P+V+TYN +I+ R +L ++
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
E I + TF +L+ A+V G L AE + M + D D+ YSS G
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-------DIFTYSSLINGF 370
Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
D+ +FE ++ K PN Y TL+KG+ RV + + +
Sbjct: 371 CMHDRLDEAKHMFE-------------LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
R + VTY T++ L +AG D A+++ +M GVP + ITY+ILL G
Sbjct: 418 F---REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C+ +++KA ++ E +K+EPD+ +YNI+I+G F + +G+ P
Sbjct: 475 LCKYGKLEKAL-VVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
I YTT++ F CR GL EEA +
Sbjct: 534 NVIIYTTMISGF------------------------------------CRKGLKEEADAL 557
Query: 416 IERMKENGFYPNVATYGSL 434
MKE+G PN TY +L
Sbjct: 558 FREMKEDGTLPNSGTYNTL 576
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/436 (23%), Positives = 199/436 (45%), Gaps = 53/436 (12%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD +++LN + + + + L DQM +P+ +T+N +I ++ V
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 206
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++R++ G + T+ ++V GD+++A ++++ M +G+ + +I ++
Sbjct: 207 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 266
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+ +D ++N +E K PN Y +L++ N GR SD R
Sbjct: 267 NYKNVND-------------ALNLFTEMD--NKGIRPNVVTYNSLIRCLCNYGRWSDASR 311
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT++ ++ A VK G + A ++ EM + + + TY+ L+
Sbjct: 312 LLSDMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++D+AK + E+ P+VV+YN LI GF + F EM RG+
Sbjct: 369 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
++Y TL++ + +A K+F +M+ D
Sbjct: 428 GNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVV 487
Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
+++ DI +N+++EG C+ G VE+ + + G PNV Y ++ +G
Sbjct: 488 FEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCR 547
Query: 441 ARKPGEALLLWKEIKE 456
EA L++E+KE
Sbjct: 548 KGLKEEADALFREMKE 563
Score = 135 bits (340), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/405 (25%), Positives = 178/405 (43%), Gaps = 61/405 (15%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P +N +L+A A + K + L ++M D+ +YN++I R S+ L + V
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L +++++G + T SL+ Y G+R I + L D
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYC----------------HGKR----ISEAVALVD--- 174
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ + PN+ + TL+ G + S+ V +
Sbjct: 175 ---------------------------QMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 207
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ M + PD TY TVV+ L K G +D A +L +M + + A+ + Y ++
Sbjct: 208 IDRMVAR---GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 264
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C ++ A L EM D+ I P+VV+YN LI + A ++M R I P
Sbjct: 265 LCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 323
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
++++ L+ AF + A K++DEM++ DP DI ++ L+ G+C ++EA
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP----DIFTYSSLINGFCMHDRLDEA 379
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
K + E M +PNV TY +L G A++ E + L++E+ +R
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 132/342 (38%), Gaps = 56/342 (16%)
Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
++ D V + G M + P V + ++SA+ K D + M + + +
Sbjct: 60 KLDDAVDLFGEMVQSR---PLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLY 116
Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDA------------------------------- 316
+YNIL+ +C++ Q+ A +L +M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176
Query: 317 ---KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
+ +P+ V++N LI G L + ++ A+ + M ARG P +Y T++
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236
Query: 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433
LA + +M +++ D+V + +++ C V +A + M G PNV TY S
Sbjct: 237 DLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295
Query: 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
L + + +A L ++ ER + P+ AL D V+
Sbjct: 296 LIRCLCNYGRWSDASRLLSDMIER----------------KINPNVVTFSALIDAFVKEG 339
Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIY--VEMHSRMFTSKH 533
+A ++ M + I P+ Y + MH R+ +KH
Sbjct: 340 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
+S N+L+D + +DD A+ F EM P+ + + L+ A A ++ L + E
Sbjct: 51 LSRNVLLD--LKLDD---AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISL-GE 104
Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
+++ R+ D+ ++N+L+ +CR + A ++ +M + G+ P++ T SL NG +
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 164
Query: 443 KPGEALLLWKEI 454
+ EA+ L ++
Sbjct: 165 RISEAVALVDQM 176
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/473 (23%), Positives = 211/473 (44%), Gaps = 42/473 (8%)
Query: 5 GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
G P V ++T ++ G E+VKLF K + + P+ +N V
Sbjct: 268 GVSPDVYLFTTAINAFCKGGK--VEEAVKLFS-------KMEEAGVA----PNVVTFNTV 314
Query: 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
++ G+ + ++M E G +P ++TY++++K RA R FVL+ + + G
Sbjct: 315 IDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGF 374
Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
+ + +L+ +++ G L A I M + ++ Y G D+
Sbjct: 375 PPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC--KNGQADNA 432
Query: 185 DEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTTLMKG 222
+ + +++L N + +L + +P + TTL+ G
Sbjct: 433 ERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISG 492
Query: 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
G+ S + + + D T ++ L +AG +D A ++ E+ G
Sbjct: 493 LCKHGKHSKALELWFQFL---NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC 549
Query: 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342
+R++YN L+ G C + ++D+A L EM ++PD +Y+ILI G ++ A+
Sbjct: 550 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG-LKPDNYTYSILICGLFNMNKVEEAI 608
Query: 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402
F+++ + G+ P +Y+ ++ + + + + FDEM+ V+ + V +N L+
Sbjct: 609 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM-SKNVQPNTVVYNHLIRA 667
Query: 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
YCR G + A + E MK G PN ATY SL G+S+ + EA LL++E++
Sbjct: 668 YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/488 (23%), Positives = 196/488 (40%), Gaps = 52/488 (10%)
Query: 35 FDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94
FDVV K V PD + +NA GK ++ ++LF +M E G P+V+
Sbjct: 262 FDVVCKGV------------SPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV 309
Query: 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
T+N +I R E+++E G+ + T+ LV + +A
Sbjct: 310 TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKG------------LTRAK 357
Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP--LLPKTFAPN 212
R G D +++E+ + + ++ D E S+N + E ++ K +
Sbjct: 358 RIG--DAYFVLKEMTKKGFPPNVIVYNNLIDSFIE---AGSLNKAIEIKDLMVSKGLSLT 412
Query: 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQ 272
S Y TL+KGY G+ + R+L M N + ++T+V+ L D A +
Sbjct: 413 SSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSHLMFDSALR 469
Query: 273 VLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
+ EM + L+ G C+ + KA EL + + + D + N L+ G
Sbjct: 470 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFV-VDTRTSNALLHGL 528
Query: 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD 392
A E+ RG ++SY TL+ + A DEM++ +K D
Sbjct: 529 CEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG-LKPD 587
Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
+++L+ G M VEEA + + K NG P+V TY + +G A + E +
Sbjct: 588 NYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFD 647
Query: 453 EIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
E+ + ++P+ + + L R+ ALE+ M+ GI P
Sbjct: 648 EM----------------MSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 691
Query: 513 NKTKYKKI 520
N Y +
Sbjct: 692 NSATYTSL 699
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 5/234 (2%)
Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
++ + P++ Y+ L+ G N +V + ++ +R N PD TY+ ++ K
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR---NGMLPDVYTYSVMIDGCCK 635
Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
A + ++ EM V N + YN L++ YC+ ++ A EL RE I P+
Sbjct: 636 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL-REDMKHKGISPNSA 694
Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
+Y LI G +I A F EMR G+ P YT L+ + Q + EM
Sbjct: 695 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 754
Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
V + + + +++ GY R G V EA R++ M+E G P+ TY G
Sbjct: 755 -HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 807
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 106/501 (21%), Positives = 217/501 (43%), Gaps = 51/501 (10%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASG-------------DDGPVESVKLFDVVVK---RVRK 44
M +G P+V ++TV+ L G + G ++ + ++VK R ++
Sbjct: 299 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 358
Query: 45 FSDPDIVSDSK------PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
D V P+ YN ++++ G K +++ D M G TYN
Sbjct: 359 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 418
Query: 99 MIKLCARASRKHLLVFVLERILEMGITLCMTTFQS---LVAAYVGFGDLE--IAETIVQA 153
+IK + + +L+ +L +G + +F S L+ +++ F + E +++
Sbjct: 419 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 478
Query: 154 MREGRRDVCKIIRELDLEDYSSE---------NEG---DDDDDDEVFEKL-----LPNSI 196
M G + +I L S+ N+G D + + L L +
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 538
Query: 197 NPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256
E +L + + Y TL+ G + ++ + L M ++ PD+ TY+
Sbjct: 539 RIQKE--ILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR---GLKPDNYTYSI 593
Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316
++ L ++ A Q + R G+ + TY++++ G C+ + ++ +E EM
Sbjct: 594 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK- 652
Query: 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376
++P+ V YN LI + + AL +M+ +GI+P +YT+L+K ++ S+ + A
Sbjct: 653 NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEA 712
Query: 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436
+F+EM R ++ ++ + L++GY ++G + + + ++ M +PN TY +
Sbjct: 713 KLLFEEM-RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIG 771
Query: 437 GISLARKPGEALLLWKEIKER 457
G + EA L E++E+
Sbjct: 772 GYARDGNVTEASRLLNEMREK 792
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/419 (20%), Positives = 170/419 (40%), Gaps = 47/419 (11%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
ML G+ + ++++V+ L S +FD ++ F ++ + P
Sbjct: 439 MLSIGFNVNQGSFTSVICLLC---------SHLMFDSALR----FVGEMLLRNMSPGGGL 485
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+++ GK K L+L+ Q G D T N ++ A + + + IL
Sbjct: 486 LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL 545
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE---- 176
G + ++ +L++ G L+ A + M + R L ++Y+
Sbjct: 546 GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM---------VKRGLKPDNYTYSILIC 596
Query: 177 ---NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
N ++ + ++ N +LP + Y+ ++ G R +
Sbjct: 597 GLFNMNKVEEAIQFWDDCKRNG--------MLPDVYT-----YSVMIDGCCKAERTEEGQ 643
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
M + P+ V Y ++ A ++G + A ++ +M G+ N TY L+
Sbjct: 644 EFFDEMMSKN---VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
KG ++++AK L EM + +EP+V Y LIDG+ + EM ++ +
Sbjct: 701 KGMSIISRVEEAKLLFEEMRMEG-LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 759
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
P KI+YT ++ +A A+++ +EM R+ + D + + + GY + G V EA
Sbjct: 760 HPNKITYTVMIGGYARDGNVTEASRLLNEM-REKGIVPDSITYKEFIYGYLKQGGVLEA 817
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 30/271 (11%)
Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVP---ANRITYNILLKGYCQQLQIDKAKELL 309
+Y ++ L+ A + AR VL + VP + + L + +E+
Sbjct: 141 SYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEIR 200
Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
R+M+D + +V DG L AL F + +G+ P+K + L+ +
Sbjct: 201 RKMSD---LLIEVYCTQFKRDGCYL------ALDVFPVLANKGMFPSKTTCNILLTSLVR 251
Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
+++ + + FD + + V D+ + + +C+ G VEEA ++ +M+E G PNV
Sbjct: 252 ANEFQKCCEAFDVVCKG--VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV 309
Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
T+ ++ +G+ + + EA + +++ ER + P L L+ L
Sbjct: 310 TFNTVIDGLGMCGRYDEAFMFKEKMVER------------GMEPTLITYSILVKGLT--- 354
Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
RA A ++ M + G PPN Y +
Sbjct: 355 -RAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 384
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 132/516 (25%), Positives = 231/516 (44%), Gaps = 65/516 (12%)
Query: 5 GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
GY P +ST+V+ G E+V L D +V+ +PD + +
Sbjct: 135 GYEPDTITFSTLVNGFCLEGR--VSEAVALVDRMVEM-----------KQRPDLVTVSTL 181
Query: 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
+N G+ + L L D+M E+G +PD +TY ++ ++ L + + ++ E I
Sbjct: 182 INGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNI 241
Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE-----NEG 179
+ + ++ + G + A ++ M K I+ D+ YSS N+G
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEM------KGIKA-DVVTYSSLIGGLCNDG 294
Query: 180 DDDDDDEVFEKLLPNSINPS------------SEPPLL----------PKTFAPNSRIYT 217
DD ++ +++ +I P E LL + AP++ Y
Sbjct: 295 KWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYN 354
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
+L+ G+ E + + +M M + PD VTY+ ++++ KA +D ++ E+
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSK---GCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411
Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
+ G+ N ITYN L+ G+CQ +++ AKEL +EM + P VV+Y IL+DG +
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG-VPPSVVTYGILLDGLCDNGE 470
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
AL F +M+ + Y ++ +S+ A +F L D VK D+V +N
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS-LSDKGVKPDVVTYN 529
Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
+++ G C+ G + EA + +MKE+G P+ TY L A G L+ E+ E
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR----AHLGGSGLISSVELIE- 584
Query: 458 CEVKKEGVNADS-------DLPPPLKPDEELLDALA 486
E+K G +ADS D+ + D+ LD L+
Sbjct: 585 -EMKVCGFSADSSTIKMVIDMLSDRRLDKSFLDMLS 619
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 127/286 (44%), Gaps = 18/286 (6%)
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+LG + E N D T T +++ + + A VL ++G + IT++ L+
Sbjct: 89 VLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN 148
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C + ++ +A L+ M + K PD+V+ + LI+G L + AL + M G
Sbjct: 149 GFCLEGRVSEAVALVDRMV-EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 207
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
P +++Y ++ S LA +F +M + +K +V ++++++ C+ G ++A
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQYSIVIDSLCKDGSFDDALS 266
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
+ M+ G +V TY SL G+ K + + +E+ R
Sbjct: 267 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR----------------N 310
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+ PD AL D+ V+ +A E+ M GI P+ Y +
Sbjct: 311 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 356
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 203/466 (43%), Gaps = 46/466 (9%)
Query: 53 DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
D +P +YNA+++ + G + +++ +M + G PDV ++ + +K + SR H
Sbjct: 106 DCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAA 165
Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC-----KIIRE 167
+ +L + G + + + ++V + + M +C K++R
Sbjct: 166 LRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRV 225
Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
L +GD + +++ +K++ + PN Y ++G G
Sbjct: 226 LC-------KKGDVKECEKLLDKVIKRGV-------------LPNLFTYNLFIQGLCQRG 265
Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
+ VRM+G + Q PD +TY ++ L K A L +M G+ +
Sbjct: 266 ELDGAVRMVGCLIEQ---GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322
Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
TYN L+ GYC+ + A+ ++ + + + PD +Y LIDG ++ AL FNE
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFV-PDQFTYRSLIDGLCHEGETNRALALFNE 381
Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407
+GI P I Y TL+K + A ++ +EM + ++ +N+LV G C+MG
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIP-EVQTFNILVNGLCKMG 440
Query: 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467
V +A +++ M G++P++ T+ L +G S K AL EI + V
Sbjct: 441 CVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL----EILD--------VML 488
Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
D+ + P + LL+ L + + F +E M E G PN
Sbjct: 489 DNGVDPDVYTYNSLLNGLC----KTSKFEDVMETYKTMVEKGCAPN 530
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 113/493 (22%), Positives = 203/493 (41%), Gaps = 72/493 (14%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+ G P ++T+++ G +V+ + + + PD
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGG-------------MVQLAERIVGDAVFNGFVPDQFT 358
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y ++++ + G+ + L LF++ G KP+V+ YN +IK + + +
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMS 418
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
E G+ + TF LV G + A+ +V+ M
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM-------------------------- 452
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
+ K + P+ + L+ GY + ++ + + +L M
Sbjct: 453 ------------------------ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML 488
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
DN PD TY ++++ L K + + M G N T+NILL+ C+
Sbjct: 489 ---DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKIS 359
++D+A LL EM + + + PD V++ LIDGF D GA T F +M A ++ + +
Sbjct: 546 KLDEALGLLEEMKNKS-VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPT 604
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
Y ++ AF +A K+F EM+ D + D + ++V+G+C+ G V + + M
Sbjct: 605 YNIIIHAFTEKLNVTMAEKLFQEMV-DRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEM 663
Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN--ADSDLPPPLKP 477
ENGF P++ T G + N + + + EA + + ++ V E VN D D P
Sbjct: 664 MENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLV-PEAVNTICDVDKKEVAAP 722
Query: 478 DEELLDALADICV 490
L D L C+
Sbjct: 723 KLVLEDLLKKSCI 735
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 115/461 (24%), Positives = 210/461 (45%), Gaps = 38/461 (8%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
ML SG + ++ ++ L GD E KL D V+KR P+
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECE--KLLDKVIKR-----------GVLPNLFT 253
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERI 119
YN + G+ +++ + E G KPDV+TYN +I LC + + V+ L ++
Sbjct: 254 YNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY-LGKM 312
Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIV-QAMREGRRDVCKIIRELDLEDYSSENE 178
+ G+ T+ +L+A Y G +++AE IV A+ G R L ++ +E
Sbjct: 313 VNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL-IDGLC--HE 369
Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
G+ + +F + L I PN +Y TL+KG N+G + + ++
Sbjct: 370 GETNRALALFNEALGKGIK-------------PNVILYNTLIKGLSNQGMILEAAQLANE 416
Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
M + P+ T+ +V+ L K G + A ++ M G + T+NIL+ GY
Sbjct: 417 M---SEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYST 473
Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
QL+++ A E+L M D+ ++PDV +YN L++G + + M +G AP
Sbjct: 474 QLKMENALEILDVMLDNG-VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLF 532
Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
++ L+++ + A + +EM ++ V D V + L++G+C+ G ++ A + +
Sbjct: 533 TFNILLESLCRYRKLDEALGLLEEM-KNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591
Query: 419 MKEN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458
M+E + TY + + + A L++E+ +RC
Sbjct: 592 MEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 23/307 (7%)
Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274
+Y MK Y +G+V + V + R + P +Y ++S LV +G D+A +V
Sbjct: 78 VYVGAMKNYGRKGKVQEAVNVF---ERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY 134
Query: 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334
M G+ + ++ I +K +C+ + A LL M+ E +VV+Y ++ GF
Sbjct: 135 MRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG-CEMNVVAYCTVVGGFYE 193
Query: 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394
+ A F +M A G++ ++ L++ K K+ D++++ V ++
Sbjct: 194 ENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG-VLPNLF 252
Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-LLLWKE 453
+N+ ++G C+ G ++ A R++ + E G P+V TY +L G+ K EA + L K
Sbjct: 253 TYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKM 312
Query: 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
+ E L+PD + L + + A IV +G P+
Sbjct: 313 VNE-----------------GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPD 355
Query: 514 KTKYKKI 520
+ Y+ +
Sbjct: 356 QFTYRSL 362
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/415 (21%), Positives = 173/415 (41%), Gaps = 46/415 (11%)
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEG 179
E+G ++T++S++ +G E E ++ MRE + + + + +++Y +G
Sbjct: 33 EVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGR--KG 90
Query: 180 DDDDDDEVFEKLLPNSINPS--SEPPLLP--------------------KTFAPNSRIYT 217
+ VFE++ P+ S ++ + P+ +T
Sbjct: 91 KVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
MK + R +R+L M Q + V Y TVV + ++ +M
Sbjct: 151 IRMKSFCKTSRPHAALRLLNNMSSQ---GCEMNVVAYCTVVGGFYEENFKAEGYELFGKM 207
Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
GV T+N LL+ C++ + + ++LL ++ + P++ +YN+ I G +
Sbjct: 208 LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG-VLPNLFTYNLFIQGLCQRGE 266
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
GA+ + +G P I+Y L+ +S+ + A +M+ + ++ D +N
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG-LEPDSYTYN 325
Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
L+ GYC+ G+V+ A+RI+ NGF P+ TY SL +G+ + AL L+ E
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEA--- 382
Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512
L +KP+ L + L +A ++ M E G+ P
Sbjct: 383 -------------LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIP 424
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 188/436 (43%), Gaps = 53/436 (12%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+P +++LN + + + L DQM E G +PD +T+ +I ++ V
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++R+++ G + T+ +V GD ++A ++ M + + +I ++
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
DD ++N E + K PN Y++L+ + GR SD +
Sbjct: 272 KYRHVDD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCSYGRWSDASQ 316
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT+ ++ A VK G A ++ +M + + + TYN L+
Sbjct: 317 LLSDMIEKKIN---PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 373
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++DKAK++ M PDVV+YN LI GF F EM RG+
Sbjct: 374 GFCMHDRLDKAKQMFEFMVS-KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 432
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
++YTTL++ A KVF +M+ D
Sbjct: 433 GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEV 492
Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
+K+DI + ++EG C+ G V++ + + G PNV TY ++ +G+
Sbjct: 493 FDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 552
Query: 441 ARKPGEALLLWKEIKE 456
R EA L K++KE
Sbjct: 553 KRLLQEAYALLKKMKE 568
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 110/481 (22%), Positives = 199/481 (41%), Gaps = 88/481 (18%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P +N +L+A A + K + L ++M + TYN++I R S+ L + +
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L +++++G + T SL+ Y + A +V M E
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE------------------- 183
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ P++ +TTL+ G + S+ V +
Sbjct: 184 -------------------------------MGYRPDTITFTTLIHGLFLHNKASEAVAL 212
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ M ++ P+ VTY VV+ L K G D A +L +M + A+ + +N ++
Sbjct: 213 VDRMVQR---GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDS 269
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C+ +D A L +EM + I P+VV+Y+ LI + A ++M + I P
Sbjct: 270 LCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 328
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
+++ L+ AF + A K++D+M++ DP DI +N LV G+C +++A
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP----DIFTYNSLVNGFCMHDRLDKA 384
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EG 464
K++ E M +P+V TY +L G +++ + L++E+ R V +G
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 444
Query: 465 VNADSD---------------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
+ D D +PP + LLD L + KALE+ M++
Sbjct: 445 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN----NGKLEKALEVFDYMQKSE 500
Query: 510 I 510
I
Sbjct: 501 I 501
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 105/439 (23%), Positives = 180/439 (41%), Gaps = 78/439 (17%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M++ G P++ + VV+ L GD D+ + + K I + D
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDT---------DLALNLLNKMEAAKI----EADVVI 262
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+N ++++ L LF +M G +P+V+TY+ +I R +L ++
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
E I + TF +L+ A+V G AE + M +R + + D+ Y+S G
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI--KRSI-----DPDIFTYNSLVNGF 375
Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
D ++FE ++ K P+ Y TL+KG+ RV D +
Sbjct: 376 CMHDRLDKAKQMFE-------------FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
R D VTYTT++ L G D A++V +M GVP + +TY+ILL G
Sbjct: 423 F---REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C +++KA E+ M ++I+ D+ Y +I+G F + +G+ P
Sbjct: 480 LCNNGKLEKALEVFDYM-QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 538
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
++Y T ++ G C L++EA +
Sbjct: 539 NVVTYNT------------------------------------MISGLCSKRLLQEAYAL 562
Query: 416 IERMKENGFYPNVATYGSL 434
+++MKE+G PN TY +L
Sbjct: 563 LKKMKEDGPLPNSGTYNTL 581
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/434 (24%), Positives = 194/434 (44%), Gaps = 54/434 (12%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P ++ VL+ A + LF M G D+ +YN++I R SR + + V
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
+ ++++ G + T SL+ + + A +V M E R DV +D
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID---- 182
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
S G +D E+F+++ + + ++ Y +L+ G GR SD
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRA-------------DAVTYNSLVAGLCCSGRWSDAA 229
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
R++ M ++ P+ +T+T V+ VK G A ++ EMTR V + TYN L+
Sbjct: 230 RLMRDMVMRD---IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 286
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
G C ++D+AK++L M + PDVV+YN LI+GF F EM RG+
Sbjct: 287 NGLCMHGRVDEAKQMLDLMVTKGCL-PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL 345
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK----------------------- 390
I+Y T+++ + + +P A ++F M P ++
Sbjct: 346 VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFE 405
Query: 391 --------VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
+DI +N+++ G C++G VE+A + + G P+V +Y ++ +G R
Sbjct: 406 NMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKR 465
Query: 443 KPGEALLLWKEIKE 456
+ ++ LL+++++E
Sbjct: 466 QWDKSDLLYRKMQE 479
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 124/257 (48%), Gaps = 5/257 (1%)
Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
+ P+ ++L+ G+ RV D + ++ M E+ PD V Y T++ K G ++
Sbjct: 135 YEPDVVTVSSLINGFCQGNRVFDAIDLVSKM---EEMGFRPDVVIYNTIIDGSCKIGLVN 191
Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
A ++ M R GV A+ +TYN L+ G C + A L+R+M I P+V+++ +
Sbjct: 192 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVM-RDIVPNVITFTAV 250
Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
ID F+ + A+ + EM R + P +Y +L+ + + A ++ D M+
Sbjct: 251 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC 310
Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
+ D+V +N L+ G+C+ V+E ++ M + G + TY ++ G A +P A
Sbjct: 311 LP-DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369
Query: 449 LLWKEIKERCEVKKEGV 465
++ + R ++ +
Sbjct: 370 EIFSRMDSRPNIRTYSI 386
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 193/446 (43%), Gaps = 41/446 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M++S LP + +S V+S++A S K +D+V+ V D +
Sbjct: 60 MIQSRPLPSIVDFSKVLSKIAKS---------KNYDLVISLFHHME----VCGIGHDLYS 106
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN V+N + L + +M +FG +PDV+T + +I + +R + ++ ++
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 166
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRRDVCKIIRELDLEDYSSENEG 179
EMG + + +++ G + A + M R+G R L S
Sbjct: 167 EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWS 226
Query: 180 DDDD--DDEVFEKLLPNSINPSSEPPLLPK-----------------TFAPNSRIYTTLM 220
D D V ++PN I ++ + K P+ Y +L+
Sbjct: 227 DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 286
Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
G GRV + +ML M + PD VTY T+++ K+ +D ++ EM +
Sbjct: 287 NGLCMHGRVDEAKQMLDLMVTK---GCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343
Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340
G+ + ITYN +++GY Q + D A+E+ M D++ P++ +Y+IL+ G +
Sbjct: 344 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM--DSR--PNIRTYSILLYGLCMNWRVEK 399
Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
AL F M+ I +Y ++ + A +F L +K D+V++ ++
Sbjct: 400 ALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS-LSCKGLKPDVVSYTTMI 458
Query: 401 EGYCRMGLVEEAKRIIERMKENGFYP 426
G+CR +++ + +M+E+G P
Sbjct: 459 SGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 8/233 (3%)
Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
R S V L + + PD VT +++++ + + A ++++M +G + +
Sbjct: 116 RCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVV 175
Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
YN ++ G C+ ++ A EL M D + D V+YN L+ G + A +
Sbjct: 176 IYNTIIDGSCKIGLVNDAVELFDRMERDG-VRADAVTYNSLVAGLCCSGRWSDAARLMRD 234
Query: 348 MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYC 404
M R I P I++T ++ F + A K+++EM R DP D+ +N L+ G C
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDP----DVFTYNSLINGLC 290
Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
G V+EAK++++ M G P+V TY +L NG +++ E L++E+ +R
Sbjct: 291 MHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 2/210 (0%)
Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
P V ++ V+S + K+ + D + M G+ + +YNI++ C+ + A +
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
+ +M EPDVV+ + LI+GF + A+ ++M G P + Y T++
Sbjct: 127 VGKMMKFG-YEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 185
Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
A ++FD M RD V+ D V +N LV G C G +A R++ M PNV
Sbjct: 186 KIGLVNDAVELFDRMERDG-VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNV 244
Query: 429 ATYGSLANGISLARKPGEALLLWKEIKERC 458
T+ ++ + K EA+ L++E+ RC
Sbjct: 245 ITFTAVIDVFVKEGKFSEAMKLYEEMTRRC 274
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/436 (23%), Positives = 188/436 (43%), Gaps = 53/436 (12%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+P +++LN + + + L DQM E G +PD +T+ +I ++ V
Sbjct: 77 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 136
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++R+++ G + T+ +V GD+++A ++ M + + +I ++
Sbjct: 137 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC 196
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
DD ++N E + K PN Y++L+ + GR SD +
Sbjct: 197 KYRHVDD-------------ALNLFKE--METKGIRPNVVTYSSLISCLCSYGRWSDASQ 241
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT+ ++ A VK G A ++ +M + + + TYN L+
Sbjct: 242 LLSDMIEKKIN---PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLIN 298
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++DKAK++ M PD+ +YN LI GF F EM RG+
Sbjct: 299 GFCMHDRLDKAKQMFEFMVS-KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 357
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRD---------------------------- 386
++YTTL++ A KVF +M+ D
Sbjct: 358 GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEV 417
Query: 387 ------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440
+K+DI + ++EG C+ G V++ + + G PNV TY ++ +G+
Sbjct: 418 FDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 477
Query: 441 ARKPGEALLLWKEIKE 456
R EA L K++KE
Sbjct: 478 KRLLQEAYALLKKMKE 493
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/481 (22%), Positives = 201/481 (41%), Gaps = 88/481 (18%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P +N +L+A A + K + L ++M G ++ TYN++I R S+ L + +
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L +++++G + T SL+ Y + A +V M E
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE------------------- 108
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ P++ +TTL+ G + S+ V +
Sbjct: 109 -------------------------------MGYRPDTITFTTLIHGLFLHNKASEAVAL 137
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ M ++ P+ VTY VV+ L K G +D A +L +M + A+ + +N ++
Sbjct: 138 VDRMVQR---GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDS 194
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C+ +D A L +EM + I P+VV+Y+ LI + A ++M + I P
Sbjct: 195 LCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 253
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKVDIVAWNMLVEGYCRMGLVEEA 412
+++ L+ AF + A K+ D+M++ DP DI +N L+ G+C +++A
Sbjct: 254 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP----DIFTYNSLINGFCMHDRLDKA 309
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK--------EG 464
K++ E M +P++ TY +L G +++ + L++E+ R V +G
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 369
Query: 465 VNADSD---------------LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
+ D D +PP + LLD L + KALE+ M++
Sbjct: 370 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN----NGKLEKALEVFDYMQKSE 425
Query: 510 I 510
I
Sbjct: 426 I 426
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 186/447 (41%), Gaps = 43/447 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M++ G P++ + VV+ L GD D+ + K I + D
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGD---------IDLAFNLLNKMEAAKI----EADVVI 187
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+N ++++ L LF +M G +P+V+TY+ +I R +L ++
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG- 179
E I + TF +L+ A+V G AE + D+ K + D+ Y+S G
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKL-------HDDMIKRSIDPDIFTYNSLINGF 300
Query: 180 ----DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
D ++FE ++ K P+ Y TL+KG+ RV D +
Sbjct: 301 CMHDRLDKAKQMFE-------------FMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
R D VTYTT++ L G D A++V +M GVP + +TY+ILL G
Sbjct: 348 F---REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C +++KA E+ M ++I+ D+ Y +I+G F + +G+ P
Sbjct: 405 LCNNGKLEKALEVFDYM-QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 463
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
++Y T++ + A + +M D + D +N L+ + R G + +
Sbjct: 464 NVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP-DSGTYNTLIRAHLRDGDKAASAEL 522
Query: 416 IERMKENGFYPNVATYGSLANGISLAR 442
I M+ F + +T G +AN + R
Sbjct: 523 IREMRSCRFVGDASTIGLVANMLHDGR 549
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 221/483 (45%), Gaps = 42/483 (8%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P + VL A + K + L+ +M G D+ ++ ++I R SR L + +
Sbjct: 77 PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 136
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L +++++G + T SL+ + + A ++V +M +G V ++ + +
Sbjct: 137 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM-DGFGFVPNVVIYNTVINGLC 195
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+N D ++ EVF + I ++ Y TL+ G N GR +D R+
Sbjct: 196 KNR-DLNNALEVFYCMEKKGIRA-------------DAVTYNTLISGLSNSGRWTDAARL 241
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
L M +++ + P+ + +T ++ VK G++ AR + EM R V N TYN L+ G
Sbjct: 242 LRDMVKRKID---PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
+C + AK + M PDVV+YN LI GF + F EM +G+
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVG 357
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
+Y TL+ + + + +A KVF+ M+ D V DIV +N+L++ C G +E+A +
Sbjct: 358 DAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIVTYNILLDCLCNNGKIEKALVM 416
Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
+E ++++ ++ TY + G+ K EA L++ + ++GV
Sbjct: 417 VEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSL------TRKGV---------- 460
Query: 476 KPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI----YVEMHSRMFT 530
KPD + ++ +C R R+A ++ M+E G P++ Y + Y + + +
Sbjct: 461 KPDAIAYITMISGLC-RKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIK 519
Query: 531 SKH 533
+ H
Sbjct: 520 AAH 522
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 176/380 (46%), Gaps = 26/380 (6%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL- 112
+P ++LN + ++ + L D M FG P+V+ YN +I LC + L
Sbjct: 146 RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 205
Query: 113 -VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
+ +E+ GI T+ +L++ G A +++ M + + D I ++
Sbjct: 206 VFYCMEK---KGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALID 262
Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
+ E G+ + ++++++ S+ PN Y +L+ G+ G + D
Sbjct: 263 TFVKE--GNLLEARNLYKEMIRRSV-------------VPNVFTYNSLINGFCIHGCLGD 307
Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
M M + PD VTY T+++ K+ ++ ++ EMT G+ + TYN
Sbjct: 308 AKYMFDLMVSK---GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364
Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
L+ GYCQ +++ A+++ M D + PD+V+YNIL+D AL +++
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS 423
Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
+ I+Y +++ + + K A +F + R VK D +A+ ++ G CR GL E
Sbjct: 424 EMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKG-VKPDAIAYITMISGLCRKGLQRE 482
Query: 412 AKRIIERMKENGFYPNVATY 431
A ++ RMKE+GF P+ Y
Sbjct: 483 ADKLCRRMKEDGFMPSERIY 502
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400
A + F EM P+ + +T ++ A ++ + ++ +M + + D+ ++ +L+
Sbjct: 63 AFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKM-ENLGISHDLYSFTILI 121
Query: 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460
+CR + A ++ +M + GF P++ T GSL NG + EA+ L
Sbjct: 122 HCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSL---------- 171
Query: 461 KKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
DS P+ + + + + + ALE+ CME+ GI + Y +
Sbjct: 172 ------VDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTL 225
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/418 (26%), Positives = 186/418 (44%), Gaps = 26/418 (6%)
Query: 52 SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
S P + +L A ANL + + + +M +G D+ ++ ++I R SR
Sbjct: 65 SQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSF 124
Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
+ VL +++++G + TF SL+ + + A ++V M K E ++
Sbjct: 125 ALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM-------VKSGYEPNVV 177
Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
Y++ +G + + L N + K + Y TL+ G GR SD
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEMEK--------KGLGADVVTYNTLLTGLCYSGRWSD 229
Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
RML M ++ N PD VT+T ++ VK G++D A+++ EM + V N +TYN
Sbjct: 230 AARMLRDMMKRSIN---PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286
Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
++ G C ++ AK+ MA P+VV+YN LI GF + F M
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE 345
Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
G +Y TL+ + + ++A +F M+ RV DI+ +L+ G C G +E
Sbjct: 346 GFNADIFTYNTLIHGYCQVGKLRVALDIFCWMV-SRRVTPDIITHCILLHGLCVNGEIES 404
Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469
A + M+E+ Y + Y + +G+ A K +A L+ C + EGV D+
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELF------CRLPVEGVKPDA 456
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/423 (21%), Positives = 182/423 (43%), Gaps = 68/423 (16%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M++ GY P + + +++ G F +V+ V+ +P++V
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDA-----FSLVILMVKSGYEPNVV--------V 178
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN +++ G+ L+L ++M + G DV+TYN ++ + R +L ++
Sbjct: 179 YNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM 238
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
+ I + TF +L+ +V +G+
Sbjct: 239 KRSINPDVVTFTALIDVFV-------------------------------------KQGN 261
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
D+ E++++++ +S++P N+ Y +++ G GR+ D + M
Sbjct: 262 LDEAQELYKEMIQSSVDP-------------NNVTYNSIINGLCMHGRLYDAKKTFDLMA 308
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
+ P+ VTY T++S K +D ++ M+ G A+ TYN L+ GYCQ
Sbjct: 309 SK---GCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVG 365
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
++ A ++ M ++ PD++++ IL+ G + + AL F++MR ++Y
Sbjct: 366 KLRVALDIFCWMV-SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAY 424
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
++ + + + A ++F + + VK D + +++ G C+ G EA +I RMK
Sbjct: 425 NIMIHGLCKADKVEKAWELFCRLPVEG-VKPDARTYTIMILGLCKNGPRREADELIRRMK 483
Query: 421 ENG 423
E G
Sbjct: 484 EEG 486
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377
I D+ S+ ILI F + AL+ +M G P+ +++ +L+ F L ++ A
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161
Query: 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
+ M++ + ++V +N L++G C+ G + A ++ M++ G +V TY +L G
Sbjct: 162 SLVILMVKSG-YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220
Query: 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497
+ + + +A + +++ +R + PD AL D+ V+ +
Sbjct: 221 LCYSGRWSDAARMLRDMMKR----------------SINPDVVTFTALIDVFVKQGNLDE 264
Query: 498 ALEIVACMEEHGIPPNKTKYKKIY--VEMHSRMFTSK 532
A E+ M + + PN Y I + MH R++ +K
Sbjct: 265 AQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 58/295 (19%)
Query: 29 VESVKLFDVVVKR-----VRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQ 83
V L DV VK+ ++ I S P+ YN+++N G+ + FD
Sbjct: 247 VTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDL 306
Query: 84 MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143
M G P+V+TYN +I + + + +R+ G + T+ +L+ Y G
Sbjct: 307 MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366
Query: 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203
L +A I M
Sbjct: 367 LRVALDIFCWM------------------------------------------------- 377
Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
+ + P+ + L+ G G + + MR E + V Y ++ L K
Sbjct: 378 -VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESE---KYIGIVAYNIMIHGLCK 433
Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKI 318
A +++A ++ + GV + TY I++ G C+ +A EL+R M ++ I
Sbjct: 434 ADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGII 488
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 122/506 (24%), Positives = 214/506 (42%), Gaps = 71/506 (14%)
Query: 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVK---------RVRKFSDPDIVSDSKPDTAAY 61
K W V S A G +++ ++V++K + R F D KPD +Y
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSY 187
Query: 62 NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
+ V+N A GK L+LFD+M E G PDV YN++I + + + +R+LE
Sbjct: 188 STVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE 247
Query: 122 ---------------MGITLC---------------------MTTFQSLVAAYVGFGDLE 145
G++ C + T+ SL+ G+++
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVD 307
Query: 146 IAETIVQAMREGRRDV--------------CKIIRELDLEDY---SSENEGDDDDDDEVF 188
AE++ + E + + C I+E LE + +N + + +
Sbjct: 308 KAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKE-SLELWRIMEHKNSVNIVSYNILI 366
Query: 189 EKLLPNS-INPSSEP-PLLP-KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245
+ LL N I+ ++ L+P K +A + Y + G G V+ + LG M+ E +
Sbjct: 367 KGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVN---KALGVMQEVESS 423
Query: 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305
H D Y +++ L K ++ A ++ EM++ GV N N L+ G + ++ +A
Sbjct: 424 GGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEA 483
Query: 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365
LREM + P VVSYNILI G A F EM G P +Y+ L+
Sbjct: 484 SFFLREMGKNG-CRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLC 542
Query: 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425
+ LA +++ + L+ ++ D++ N+L+ G C +G +++A ++ M+
Sbjct: 543 GLCRDRKIDLALELWHQFLQSG-LETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCT 601
Query: 426 PNVATYGSLANGISLARKPGEALLLW 451
N+ TY +L G A ++W
Sbjct: 602 ANLVTYNTLMEGFFKVGDSNRATVIW 627
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/454 (23%), Positives = 189/454 (41%), Gaps = 61/454 (13%)
Query: 38 VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
V KR+R+ + +P +YN +LNA + K LF G P++ TYN
Sbjct: 100 VFKRMRE------IFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153
Query: 98 VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
V+IK+ + L+ + + G + ++ +++ G L+ A + M E
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSE- 212
Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
R V + ++ E D E++++LL +S + PN + +
Sbjct: 213 -RGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDS------------SVYPNVKTHN 259
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
++ G GRV D +++ R + N D TY++++ L AG++D+A V E+
Sbjct: 260 IMISGLSKCGRVDDCLKI---WERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNEL 316
Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
+ +TYN +L G+C+ +I ++ EL R M + K ++VSYNILI G +
Sbjct: 317 DERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM--EHKNSVNIVSYNILIKGLLENGK 374
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
A + M A+G A K +Y + ++ A V E + +D+ A+
Sbjct: 375 IDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQE-VESSGGHLDVYAYA 433
Query: 398 MLVEGYCRMGLVEEAKRIIERMKE-----------------------------------N 422
+++ C+ +EEA +++ M + N
Sbjct: 434 SIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKN 493
Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
G P V +Y L G+ A K GEA KE+ E
Sbjct: 494 GCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE 527
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 1/218 (0%)
Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
R +E P +Y T+++A V+A + + A GV N TYN+L+K C++
Sbjct: 103 RMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKK 162
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
+ +KA+ L M + +PDV SY+ +I+ AL F+EM RG+AP
Sbjct: 163 KEFEKARGFLDWMWKEG-FKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTC 221
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
Y L+ F K A +++D +L D V ++ N+++ G + G V++ +I ERM
Sbjct: 222 YNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERM 281
Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
K+N ++ TY SL +G+ A +A ++ E+ ER
Sbjct: 282 KQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDER 319
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 194/460 (42%), Gaps = 49/460 (10%)
Query: 4 SGYLPHVKAWSTVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
S P+VK + ++S L+ G DD +K+++ R+++ ++ + D Y
Sbjct: 249 SSVYPNVKTHNIMISGLSKCGRVDD----CLKIWE----RMKQ-------NEREKDLYTY 293
Query: 62 NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERIL 120
+++++ + G K +F+++ E A DV+TYN M+ C K L L RI+
Sbjct: 294 SSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLE--LWRIM 351
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-----REGRRDVCKIIRELDLEDYSS 175
E ++ + ++ L+ + G ++ A I + M + I L + Y +
Sbjct: 352 EHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVN 411
Query: 176 ---------ENEGDDDD--------DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218
E+ G D D +K L + N E + NS +
Sbjct: 412 KALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKE--MSKHGVELNSHVCNA 469
Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
L+ G + + R+ + L R N P V+Y ++ L KAG A + EM
Sbjct: 470 LIGGLIRDSRLGEASFFL---REMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526
Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
G + TY+ILL G C+ +ID A EL + +E DV+ +NILI G +
Sbjct: 527 ENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSG-LETDVMMHNILIHGLCSVGKL 585
Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
A+T M R ++Y TLM+ F A ++ M + ++ DI+++N
Sbjct: 586 DDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYK-MGLQPDIISYNT 644
Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
+++G C V A + + +G +P V T+ L +
Sbjct: 645 IMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAV 684
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 85/195 (43%), Gaps = 12/195 (6%)
Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
++K Y + D+A ++ + M + EP + SYN L++ F+ + F
Sbjct: 84 VIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETA 143
Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
G+AP +Y L+K + + A D M ++ K D+ +++ ++ + G +++
Sbjct: 144 GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEG-FKPDVFSYSTVINDLAKAGKLDD 202
Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471
A + + M E G P+V Y L +G + A+ LW + E DS +
Sbjct: 203 ALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE-----------DSSV 251
Query: 472 PPPLKPDEELLDALA 486
P +K ++ L+
Sbjct: 252 YPNVKTHNIMISGLS 266
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 57/218 (26%)
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKIS 359
+ + EL+R + + K + DV I G + D A L F MR G P S
Sbjct: 61 HVSRIVELIR--SQECKCDEDVALSVIKTYGKNSMPDQA--LDVFKRMREIFGCEPAIRS 116
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
Y TL+ AF + Q +F V ++ +N+L++ C+ E+A+ ++ M
Sbjct: 117 YNTLLNAFVEAKQWVKVESLF-AYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWM 175
Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
+ GF P+V +Y ++ N DL K D+
Sbjct: 176 WKEGFKPDVFSYSTVIN---------------------------------DLAKAGKLDD 202
Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
ALE+ M E G+ P+ T Y
Sbjct: 203 ------------------ALELFDEMSERGVAPDVTCY 222
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 155/312 (49%), Gaps = 25/312 (8%)
Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
N R YT L+ G G M M QED P+ TY V++ L K G
Sbjct: 229 LVANERTYTVLINGLFKNGVKKQGFEMYEKM--QEDGV-FPNLYTYNCVMNQLCKDGRTK 285
Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
A QV EM GV N +TYN L+ G C+++++++A +++ +M D I P++++YN L
Sbjct: 286 DAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTL 344
Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
IDGF + AL+ ++++RG++P+ ++Y L+ F A K+ EM +
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM-EERG 403
Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
+K V + +L++ + R +E+A ++ M+E G P+V TY L +G + + EA
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463
Query: 449 LLWKEIKER-CEVKKEGVNADSDLPPPLKPDEELLDALA-DICVRAAFFRKALEIVACME 506
L+K + E+ CE P+E + + + C + +R AL+++ ME
Sbjct: 464 RLFKSMVEKNCE-----------------PNEVIYNTMILGYCKEGSSYR-ALKLLKEME 505
Query: 507 EHGIPPNKTKYK 518
E + PN Y+
Sbjct: 506 EKELAPNVASYR 517
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 183/405 (45%), Gaps = 27/405 (6%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P + +N +L ++ F++ ++ DV ++ ++IK C A +
Sbjct: 127 PGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLDVYSFGILIKGCCEAGEIEKSFDL 185
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
L + E G + + + +L+ G++E A+ + M G+ + R +
Sbjct: 186 LIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM--GKLGLVANERTYTVLINGL 243
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
G E++EK+ + + PN Y +M +GR D ++
Sbjct: 244 FKNGVKKQGFEMYEKMQEDGV-------------FPNLYTYNCVMNQLCKDGRTKDAFQV 290
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
MR + + VTY T++ L + ++ A +V+ +M G+ N ITYN L+ G
Sbjct: 291 FDEMRER---GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
+C ++ KA L R++ + P +V+YNIL+ GF D++GA EM RGI P
Sbjct: 348 FCGVGKLGKALSLCRDLKSRG-LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKP 406
Query: 356 TKISYTTLMKAFALSSQPKLANKV---FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
+K++YT L+ FA S + A ++ +E+ P D+ +++L+ G+C G + EA
Sbjct: 407 SKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP----DVHTYSVLIHGFCIKGQMNEA 462
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
R+ + M E PN Y ++ G AL L KE++E+
Sbjct: 463 SRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEK 507
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 139/289 (48%), Gaps = 19/289 (6%)
Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
D ++ ++ +AG ++++ +L E+T G N + Y L+ G C++ +I+KAK+L
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221
Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
EM + + +Y +LI+G + +M+ G+ P +Y +M
Sbjct: 222 FEMGKLGLVANER-TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK 280
Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
+ K A +VFDEM R+ V +IV +N L+ G CR + EA +++++MK +G PN+
Sbjct: 281 DGRTKDAFQVFDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339
Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
TY +L +G K G+AL L +++K R L P L L+
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSR------------GLSPSLVTYNILVSGFC--- 384
Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538
R A ++V MEE GI P+K Y I ++ +R + A Q R
Sbjct: 385 -RKGDTSGAAKMVKEMEERGIKPSKVTY-TILIDTFARSDNMEKAIQLR 431
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 144/302 (47%), Gaps = 21/302 (6%)
Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
+ L+KG G + + +L + + P+ V YTT++ K G +++A+ +
Sbjct: 166 FGILIKGCCEAGEIEKSFDLLIELT---EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF 222
Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
EM ++G+ AN TY +L+ G + + E+ +M +D + P++ +YN +++
Sbjct: 223 EMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG-VFPNLYTYNCVMNQLCKD 281
Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
+ A F+EMR RG++ ++Y TL+ + ANKV D+M D + +++
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLIT 340
Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
+N L++G+C +G + +A + +K G P++ TY L +G A + KE++
Sbjct: 341 YNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEME 400
Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
ER +KP + L D R+ KA+++ MEE G+ P+
Sbjct: 401 ER----------------GIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVH 444
Query: 516 KY 517
Y
Sbjct: 445 TY 446
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 146/339 (43%), Gaps = 57/339 (16%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P+ YN V+N G+ K Q+FD+M E G +++TYN +I R + + V
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKV 325
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
++++ GI + T+ +L+ + G G L A ++ + ++
Sbjct: 326 VDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLK-------------------- 365
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ +P+ Y L+ G+ +G S +M
Sbjct: 366 ------------------------------SRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ M E+ P VTYT ++ ++ +M++A Q+ M +G+ + TY++L+ G
Sbjct: 396 VKEM---EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
+C + Q+++A L + M + EP+ V YN +I G+ S AL EM + +AP
Sbjct: 453 FCIKGQMNEASRLFKSMVEK-NCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAP 511
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVKV 391
SY +++ + K A ++ ++M+ DP +
Sbjct: 512 NVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSI 550
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 18/217 (8%)
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
Q + LL + + + Y ++I+ ++ ++++FNEM G P +
Sbjct: 73 QFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCF 132
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
L+ SS F+E +V +D+ ++ +L++G C G +E++ ++ +
Sbjct: 133 NYLLTFVVGSSSFNQWWSFFNE--NKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELT 190
Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
E GF PNV Y +L +G K GE + K E+ K G+ A +E
Sbjct: 191 EFGFSPNVVIYTTLIDGCC---KKGE---IEKAKDLFFEMGKLGLVA----------NER 234
Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
L + + ++ E+ M+E G+ PN Y
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTY 271
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 5 GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
G P + ++ +VS GD K V++ + I KP Y +
Sbjct: 368 GLSPSLVTYNILVSGFCRKGDTSGA---------AKMVKEMEERGI----KPSKVTYTIL 414
Query: 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100
++ A +K +QL M E G PDV TY+V+I
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 115/480 (23%), Positives = 219/480 (45%), Gaps = 69/480 (14%)
Query: 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
S P AYN +L +GK + L++F++M + A P++ TYN++I + RA +
Sbjct: 339 SIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAF 397
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLE 171
+ + + + G+ F ++ +V + + ++ + C + E+D +
Sbjct: 398 ELRDSMQKAGL----------------FPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYK 441
Query: 172 DYSSE------------NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
+ + G DD +V+EK+L + NS +YT+L
Sbjct: 442 VCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRT-------------NSIVYTSL 488
Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM-T 278
+K + N GR D ++ M Q N S PD T + + KAG ++ R + E+
Sbjct: 489 IKNFFNHGRKEDGHKIYKDMINQ--NCS-PDLQLLNTYMDCMFKAGEPEKGRAMFEEIKA 545
Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
R VP R +Y+IL+ G + ++ EL M + + D +YNI+IDGF
Sbjct: 546 RRFVPDAR-SYSILIHGLIKAGFANETYELFYSMKEQGCV-LDTRAYNIVIDGFCKCGKV 603
Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
A EM+ +G PT ++Y +++ A + A +F+E + R+++++V ++
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA-KSKRIELNVVIYSS 662
Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-R 457
L++G+ ++G ++EA I+E + + G PN+ T+ SL + + A + EAL+ ++ +KE +
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
C P++ L + + F KA M++ G+ P+ Y
Sbjct: 723 C-----------------TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISY 765
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/532 (20%), Positives = 220/532 (41%), Gaps = 91/532 (17%)
Query: 7 LPHVKAWSTVVSRLAASGD-------------DGPVESVKLFDVVVKRVRKFSDPD---- 49
+P A++T++ ++G G + SV ++ ++ +RK D
Sbjct: 305 VPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALK 364
Query: 50 ----IVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105
+ D+ P+ + YN +++ GK +L D M + G P+V T N+M+ +
Sbjct: 365 VFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 106 ASRKHLLVFVLERILEMGITLCM---TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC 162
+ + + E EM +C TF SL+ G ++ A + + M +
Sbjct: 425 SQKLDEACAMFE---EMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTN 481
Query: 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP--------------SSEPP----- 203
I+ ++++ N G +D ++++ ++ + +P + EP
Sbjct: 482 SIVYTSLIKNFF--NHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539
Query: 204 ---LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260
+ + F P++R Y+ L+ G + G ++T + +M+ Q D Y V+
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ---GCVLDTRAYNIVIDG 596
Query: 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320
K G +++A Q+L EM G +TY ++ G + ++D+A L E A +IE
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE-AKSKRIEL 655
Query: 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
+VV Y+ LIDGF + A E+ +G+ P ++ +L+ A + + A F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRM---------------------------------- 406
M ++ + + V + +L+ G C++
Sbjct: 716 QSM-KELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774
Query: 407 -GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
G + EA + +R K NG P+ A Y ++ G+S + +A L++E + R
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 125/557 (22%), Positives = 235/557 (42%), Gaps = 60/557 (10%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVES-VKLFDVVVKRVRKFSDPDIVSDSKPDTA 59
M GY P V ++T++ A +G V+S + L D + K S D D
Sbjct: 194 MQELGYEPTVHLFTTLIRGFA---KEGRVDSALSLLDEM-----KSSSLD------ADIV 239
Query: 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
YN +++ +GK + F ++ G KPD +TY MI + +A+R V + E +
Sbjct: 240 LYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL 299
Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
+ C + +++ Y G + A ++++ R I L G
Sbjct: 300 EKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT--CLRKMG 357
Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL-MKGYMNEGRVSDTVRMLGA 238
D+ +VFE++ ++ S +L ++ T ++ M + + VR +
Sbjct: 358 KVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNI 417
Query: 239 M------RRQEDNA-----------SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281
M ++ D A PD +T+ +++ L K G +D A +V +M
Sbjct: 418 MVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSD 477
Query: 282 VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341
N I Y L+K + + + ++ ++M + PD+ N +D +
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ-NCSPDLQLLNTYMDCMFKAGEPEKG 536
Query: 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--LRDPRVKVDIVAWNML 399
F E++AR P SY+ L+ + AN+ ++ +++ +D A+N++
Sbjct: 537 RAMFEEIKARRFVPDARSYSILIHGLI---KAGFANETYELFYSMKEQGCVLDTRAYNIV 593
Query: 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK-ERC 458
++G+C+ G V +A +++E MK GF P V TYGS+ +G++ + EA +L++E K +R
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653
Query: 459 EVKKEGVNADSD------------------LPPPLKPDEELLDALADICVRAAFFRKALE 500
E+ ++ D + L P+ ++L D V+A +AL
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALV 713
Query: 501 IVACMEEHGIPPNKTKY 517
M+E PN+ Y
Sbjct: 714 CFQSMKELKCTPNQVTY 730
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 107/480 (22%), Positives = 200/480 (41%), Gaps = 44/480 (9%)
Query: 38 VVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97
VV+ +RKF +P +AY ++ A + + L LF QM E G +P V +
Sbjct: 155 VVQMMRKFK-------FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFT 207
Query: 98 VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157
+I+ A+ R + +L+ + + + + + ++ G +++A +
Sbjct: 208 TLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN 267
Query: 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
++ + N D+ E+FE L N +P T+A Y
Sbjct: 268 GLKPDEVTYTSMIGVLCKANR--LDEAVEMFEHLEKNR--------RVPCTYA-----YN 312
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
T++ GY + G+ + +L RQ S P + Y +++ L K G +D A +V EM
Sbjct: 313 TMIMGYGSAGKFDEAYSLL---ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369
Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
+ P N TYNIL+ C+ ++D A E LR+ A + P+V + NI++D
Sbjct: 370 KKDAAP-NLSTYNILIDMLCRAGKLDTAFE-LRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
A F EM + P +I++ +L+ + A KV+++ML D + + + +
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKML-DSDCRTNSIVYT 486
Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
L++ + G E+ +I + M P++ + + + A +P + +++EIK R
Sbjct: 487 SLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKAR 546
Query: 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
PD L ++A F + E+ M+E G + Y
Sbjct: 547 ----------------RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY 590
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
F P+ ++ G + ++ + ++ MR+ + P YTT++ A D
Sbjct: 129 FGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFK---FRPAFSAYTTLIGAFSAVNHSD 185
Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
+ +M +G + L++G+ ++ ++D A LL EM + ++ D+V YN+
Sbjct: 186 MMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEM-KSSSLDADIVLYNVC 244
Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
ID F + A FF+E+ A G+ P +++YT+++ +++ A ++F+ + ++ R
Sbjct: 245 IDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR 304
Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
V A+N ++ GY G +EA ++ER + G P+V Y + + K EAL
Sbjct: 305 VPC-TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEAL 363
Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
+++E+K+ D P L L+D L RA A E+ M++
Sbjct: 364 KVFEEMKK-------------DAAPNLSTYNILIDMLC----RAGKLDTAFELRDSMQKA 406
Query: 509 GIPPN 513
G+ PN
Sbjct: 407 GLFPN 411
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 115/297 (38%), Gaps = 54/297 (18%)
Query: 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
DT AYN V++ GK K QL ++M G +P V+TY +I A+ R +
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645
Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176
E I L + + SL+ GFG + GR D +I E
Sbjct: 646 EEAKSKRIELNVVIYSSLID---GFGKV------------GRIDEAYLILE--------- 681
Query: 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236
L+ K PN + +L+ + +++ +
Sbjct: 682 --------------------------ELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296
+M+ + P+ VTY +++ L K ++A EM + G+ + I+Y ++ G
Sbjct: 716 QSMKELK---CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Query: 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
+ I +A L + + PD YN +I+G + + A + F E R RG+
Sbjct: 773 AKAGNIAEAGALFDRFKANGGV-PDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 110/446 (24%), Positives = 196/446 (43%), Gaps = 73/446 (16%)
Query: 4 SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
SG +P V ++ ++S +G+ SV D +S S PD YN
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSV---------------LDRMSVS-PDVVTYNT 209
Query: 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
+L + + GK K+ +++ D+M + PDV+TY ++I+ R S + +L+ + + G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269
Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD-VCKIIRELDLEDYSSENEGDDD 182
T + T+ LV +EGR D K + ++
Sbjct: 270 CTPDVVTYNVLVNGIC---------------KEGRLDEAIKFLNDM-------------- 300
Query: 183 DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242
PSS PN + +++ + GR D ++L M R+
Sbjct: 301 ---------------PSS-------GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338
Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
P VT+ +++ L + G + RA +L +M + G N ++YN LL G+C++ ++
Sbjct: 339 ---GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395
Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
D+A E L M PD+V+YN ++ A+ N++ ++G +P I+Y T
Sbjct: 396 DRAIEYLERMVSRG-CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
++ A + + A K+ DEM R +K D + ++ LV G R G V+EA + +
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEM-RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513
Query: 423 GFYPNVATYGSLANGISLARKPGEAL 448
G PN T+ S+ G+ +R+ A+
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAI 539
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/474 (22%), Positives = 212/474 (44%), Gaps = 39/474 (8%)
Query: 44 KFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103
KF + + + PD ++ LGK +K ++ + + GA PDV+TYNVMI
Sbjct: 123 KFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGY 182
Query: 104 ARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163
+A + + VL+R M ++ + T+ +++ + G L+ A ++ M + RD
Sbjct: 183 CKAGEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ--RDCYP 237
Query: 164 IIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223
D+ Y+ E D L + + + P+ Y L+ G
Sbjct: 238 -----DVITYTILIEATCRDSGVGHAMKLLDEMRD--------RGCTPDVVTYNVLVNGI 284
Query: 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283
EGR+ + ++ L M + P+ +T+ ++ ++ G A ++LA+M R G
Sbjct: 285 CKEGRLDEAIKFLNDM---PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341
Query: 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343
+ +T+NIL+ C++ + +A ++L +M +P+ +SYN L+ GF A+
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHG-CQPNSLSYNPLLHGFCKEKKMDRAIE 400
Query: 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403
+ M +RG P ++Y T++ A + + A ++ +++ V ++ +N +++G
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV-LITYNTVIDGL 459
Query: 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463
+ G +A ++++ M+ P+ TY SL G+S K EA+ + E ER ++
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF-ERMGIRPN 518
Query: 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
V +S + K + +A++ + M G PN+T Y
Sbjct: 519 AVTFNSIMLGLCKSRQT---------------DRAIDFLVFMINRGCKPNETSY 557
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 192/455 (42%), Gaps = 43/455 (9%)
Query: 72 GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
G+ ++ + + M G PD++ +I+ R + +LE + G + T+
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITY 175
Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVC--KIIRELDLEDYSSENEGDDDDDDEVFE 189
+++ Y G++ A +++ M V I+R L + G EV +
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLC-------DSGKLKQAMEVLD 228
Query: 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249
+ +L + P+ YT L++ + V +++L MR D P
Sbjct: 229 R-------------MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR---DRGCTP 272
Query: 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELL 309
D VTY +V+ + K G +D A + L +M G N IT+NI+L+ C + A++LL
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 310 REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369
+M P VV++NILI+ A+ +M G P +SY L+ F
Sbjct: 333 ADMLRKG-FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCK 391
Query: 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429
+ A + + M+ DIV +N ++ C+ G VE+A I+ ++ G P +
Sbjct: 392 EKKMDRAIEYLERMVSRG-CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450
Query: 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489
TY ++ +G++ A K G+A+ L E++ + LKPD +L
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAK----------------DLKPDTITYSSLVGGL 494
Query: 490 VRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEM 524
R +A++ E GI PN + I + +
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 173/415 (41%), Gaps = 74/415 (17%)
Query: 77 FLQLFDQMHEFGAKPDVL-----TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131
+Q F + ++ G K DV + + I L +R + +LV ++ G+ F
Sbjct: 16 LIQQFHREYKRGNKLDVSCRTSGSISSKIPLGSRKRNRLVLVSAASKVESSGLNGRAQKF 75
Query: 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD----DDDDEV 187
++L + Y + G + LED S N + +E
Sbjct: 76 ETLSSGY--------------SNSNGNGHYSSVNSSFALEDVESNNHLRQMVRTGELEEG 121
Query: 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247
F K L N + + P ++P TTL++G+ G+ ++L + E + +
Sbjct: 122 F-KFLENMVYHGNVPDIIP---------CTTLIRGFCRLGKTRKAAKILEIL---EGSGA 168
Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307
PD +TY ++S KAG ++ A VL R+ V + +TYN +L+ C ++ +A E
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVL---DRMSVSPDVVTYNTILRSLCDSGKLKQAME 225
Query: 308 LLREMAD----------------------------------DAKIEPDVVSYNILIDGFI 333
+L M D PDVV+YN+L++G
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285
Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
A+ F N+M + G P I++ ++++ + + A K+ +MLR +
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG-FSPSV 344
Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
V +N+L+ CR GL+ A I+E+M ++G PN +Y L +G +K A+
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI 399
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 155/375 (41%), Gaps = 41/375 (10%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
ML+ P V ++ ++ A D G ++KL D + R PD
Sbjct: 230 MLQRDCYPDVITYTILIE--ATCRDSGVGHAMKLLDEMRDR-----------GCTPDVVT 276
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN ++N G+ + ++ + M G +P+V+T+N++++ R +L +L
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML 336
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
G + + TF L+ G L A I++ M + + L + E +
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK-- 394
Query: 181 DDDDDEVFEKLLPNSINPSSEP----------------------PLLPKTFAPNSRIYTT 218
D E E+++ P L K +P Y T
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
++ G G+ +++L MR ++ PD +TY+++V L + G +D A + E
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKD---LKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
R+G+ N +T+N ++ G C+ Q D+A + L M + +P+ SY ILI+G +
Sbjct: 512 RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRG-CKPNETSYTILIEGLAYEGMA 570
Query: 339 AGALTFFNEMRARGI 353
AL NE+ +G+
Sbjct: 571 KEALELLNELCNKGL 585
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 141/592 (23%), Positives = 245/592 (41%), Gaps = 109/592 (18%)
Query: 6 YLPHVKAWSTVVSRLAASGDDGPVESVKLFDV-----------VVKRVRKFS-DPDIVSD 53
Y V +++++++ L +G G V ++L + V+ RK + D
Sbjct: 119 YKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELK 178
Query: 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLL 112
K YN +LN+ A G + Q++ +M E P++ TYN M+ C + +
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEAN 238
Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM--REGRRD---------- 160
+V +I+E G+ T+ SL+ Y DL+ A + M + RR+
Sbjct: 239 QYV-SKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHG 297
Query: 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLM 220
+C + R +D + + DDE F P R YT L+
Sbjct: 298 LC-VARRID----EAMDLFVKMKDDECF----------------------PTVRTYTVLI 330
Query: 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
K R S+ + ++ M E+ P+ TYT ++ +L ++AR++L +M
Sbjct: 331 KSLCGSERKSEALNLVKEM---EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEK 387
Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMAD-------------------------- 314
G+ N ITYN L+ GYC++ I+ A +++ M
Sbjct: 388 GLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAM 447
Query: 315 -------DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367
+ K+ PDVV+YN LIDG + A + M RG+ P + +YT+++ +
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507
Query: 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427
S + + A +FD L V ++V + L++GYC+ G V+EA ++E+M PN
Sbjct: 508 CKSKRVEEACDLFDS-LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566
Query: 428 VATYGSLANGISLARKPGEALLLWK---EIKERCEVKKEGV-------NADSD------- 470
T+ +L +G+ K EA LL + +I + V + + + D D
Sbjct: 567 SLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQ 626
Query: 471 --LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
L KPD R A +++A M E+G+ P+ Y +
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/471 (24%), Positives = 208/471 (44%), Gaps = 31/471 (6%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVF 114
P Y ++ + + + L L +M E G KP++ TY V+I LC++ +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARE- 379
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR--DVCKIIRELDLED 172
+L ++LE G+ + T+ +L+ Y G +E A +V+ M E R+ + EL ++
Sbjct: 380 LLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM-ESRKLSPNTRTYNEL-IKG 437
Query: 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232
Y N V + + +N E +LP Y +L+ G G
Sbjct: 438 YCKSN---------VHKAM--GVLNKMLERKVLPDVVT-----YNSLIDGQCRSGNFDSA 481
Query: 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292
R+L M D PD TYT+++ +L K+ ++ A + + + GV N + Y L
Sbjct: 482 YRLLSLMN---DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTAL 538
Query: 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352
+ GYC+ ++D+A +L +M + P+ +++N LI G A +M G
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSKNCL-PNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597
Query: 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
+ PT + T L+ A F +ML K D + ++ YCR G + +A
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG-TKPDAHTYTTFIQTYCREGRLLDA 656
Query: 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER-CEVKKEGVNADSDL 471
+ ++ +M+ENG P++ TY SL G + A + K +++ CE + +
Sbjct: 657 EDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKH 716
Query: 472 PPPLKPDEELLDALADICVRAAF--FRKALEIVACMEEHGIPPNKTKYKKI 520
+K ++ + ++C + F +E++ M EH + PN Y+K+
Sbjct: 717 LLEMKYGKQK-GSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKL 766
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 112/496 (22%), Positives = 199/496 (40%), Gaps = 97/496 (19%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
ML LP V +++++ SG+ FD + + +D +V PD
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGN---------FDSAYRLLSLMNDRGLV----PDQWT 499
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y +++++ + ++ LFD + + G P+V+ Y +I +A + +LE++L
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM-REGRR-----DVCKIIRELDLEDYS 174
TF +L+ G L+ A + + M + G + D I R L
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLL------ 613
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+GD D F+++L + P ++ YTT ++ Y EGR+ D
Sbjct: 614 --KDGDFDHAYSRFQQMLSSGTKP-------------DAHTYTTFIQTYCREGRLLDAED 658
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
M+ MR +N PD TY++++ G + A VL M G ++ T+ L+K
Sbjct: 659 MMAKMR---ENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIK 715
Query: 295 G-----YCQQ-------------LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
Y +Q ++ D ELL +M + + + P+ SY LI G +
Sbjct: 716 HLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHS-VTPNAKSYEKLILGICEVG 774
Query: 337 DSAGALTFFNEM-RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM--------LRDP 387
+ A F+ M R GI+P+++ + L+ + A KV D+M L
Sbjct: 775 NLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESC 834
Query: 388 RVKV--------------------------DIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
+V + D +AW ++++G + GLVE + M++
Sbjct: 835 KVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEK 894
Query: 422 NGFYPNVATYGSLANG 437
NG + TY L G
Sbjct: 895 NGCKFSSQTYSLLIEG 910
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/536 (20%), Positives = 202/536 (37%), Gaps = 132/536 (24%)
Query: 25 DDGPVESVKLFDVVVKRV----RKFSDPDIVSDS-----KPDTAAYNAVLNACANLGKPK 75
DD +V+ + V++K + RK ++V + KP+ Y ++++ + K +
Sbjct: 316 DDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFE 375
Query: 76 KFLQLFDQMHEFGAKPDVLTYNVMIK-LCARA-------------SRK------------ 109
K +L QM E G P+V+TYN +I C R SRK
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELI 435
Query: 110 --------HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
H + VL ++LE + + T+ SL+ G+ + A ++ M +
Sbjct: 436 KGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMND----- 490
Query: 162 CKIIRELDLEDYSSENEGDD-------DDDDEVFEKLLPNSINPSSE------------- 201
R L + ++ + D ++ ++F+ L +NP+
Sbjct: 491 ----RGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAG 546
Query: 202 ---------PPLLPKTFAPNSRIYTTLMKGYMNEGRV--------------------SDT 232
+L K PNS + L+ G +G++ +DT
Sbjct: 547 KVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDT 606
Query: 233 V---RML---------GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280
+ R+L ++ + + PD TYTT + + G + A ++A+M
Sbjct: 607 ILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMREN 666
Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID---- 336
GV + TY+ L+KGY Q + A ++L+ M D EP ++ LI + +
Sbjct: 667 GVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG-CEPSQHTFLSLIKHLLEMKYGKQ 725
Query: 337 --------------DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
+ + +M + P SY L+ ++A KVFD
Sbjct: 726 KGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDH 785
Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438
M R+ + + +N L+ C++ EA ++++ M G P + + L G+
Sbjct: 786 MQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/444 (24%), Positives = 198/444 (44%), Gaps = 36/444 (8%)
Query: 5 GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
G+ P V + ++ + SG+D V S L +++ +++ PD A +N +
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSF-LKEMLKRKI------------CPDVATFNIL 199
Query: 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGI 124
+N G +K L +M + G P ++TYN ++ + R + +L+ + G+
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259
Query: 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDD 184
+ T+ L+ + +++ MR+ ++I ++ Y++ G ++
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK------RMIHPNEVT-YNTLINGFSNEG 312
Query: 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
+ L N +L +PN + L+ G+++EG + ++M M E
Sbjct: 313 KVLIASQLLN--------EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM---EA 361
Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
P V+Y ++ L K D AR M R GV RITY ++ G C+ +D+
Sbjct: 362 KGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDE 421
Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
A LL EM+ D I+PD+V+Y+ LI+GF + A + G++P I Y+TL+
Sbjct: 422 AVVLLNEMSKDG-IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480
Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
K A ++++ M+ + + D +N+LV C+ G V EA+ + M +G
Sbjct: 481 YNCCRMGCLKEAIRIYEAMILEGHTR-DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539
Query: 425 YPNVATYGSLANGISLARKPGEAL 448
PN ++ L NG GE L
Sbjct: 540 LPNTVSFDCLINGYG---NSGEGL 560
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/533 (22%), Positives = 198/533 (37%), Gaps = 79/533 (14%)
Query: 2 LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAY 61
L G+ +K V R+ +G + D V + + S I PD Y
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI----DPDIVTY 441
Query: 62 NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
+A++N +G+ K ++ +++ G P+ + Y+ +I C R + + E ++
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181
G T TF LV + G + AE ++ M
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS------------------------- 536
Query: 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
+ +LPN+++ + L+ GY N G + ++
Sbjct: 537 -------DGILPNTVS------------------FDCLINGYGNSG---EGLKAFSVFDE 568
Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
HP TY +++ L K G + A + L + + + + YN LL C+
Sbjct: 569 MTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGN 628
Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISY 360
+ KA L EM + I PD +Y LI G + A+ F E ARG + P K+ Y
Sbjct: 629 LAKAVSLFGEMVQRS-ILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMY 687
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
T + + Q K A F E + + DIV N +++GY RMG +E+ ++ M
Sbjct: 688 TCFVDGMFKAGQWK-AGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMG 746
Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI--------KERCEVKKEGVNADSDLP 472
PN+ TY L +G S + + LL++ I K C G+ + L
Sbjct: 747 NQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLE 806
Query: 473 PPLK-----------PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
LK D + L C A ++V M GI +K
Sbjct: 807 IGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDK 859
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 38/335 (11%)
Query: 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD 268
+AP Y T++ Y +GR + +L M+ + +A D TY ++ L ++ +
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDA---DVCTYNMLIHDLCRSNRIA 280
Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
+ +L +M + + N +TYN L+ G+ + ++ A +LL EM + P+ V++N L
Sbjct: 281 KGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG-LSPNHVTFNAL 339
Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
IDG I + AL F M A+G+ P+++SY L+ +++ LA + M R+
Sbjct: 340 IDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG- 398
Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
V V + + +++G C+ G ++EA ++ M ++G P++ TY +L NG K G
Sbjct: 399 VCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC---KVGR-- 453
Query: 449 LLWKEIKE-RCEVKKEGVNADSDLPPPL-------------------------KPDEELL 482
+K KE C + + G++ + + L D
Sbjct: 454 --FKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTF 511
Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
+ L +A +A E + CM GI PN +
Sbjct: 512 NVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 546
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 147/342 (42%), Gaps = 58/342 (16%)
Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
+L + P+ + L+ EG + + M++ E + P VTY TV+ K
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYL---MQKMEKSGYAPTIVTYNTVLHWYCK 240
Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
G A ++L M GV A+ TYN+L+ C+ +I K LLR+M I P+ V
Sbjct: 241 KGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM-IHPNEV 299
Query: 324 SYNILIDGF-----------------------------ILIDD--SAG----ALTFFNEM 348
+YN LI+GF LID S G AL F M
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359
Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
A+G+ P+++SY L+ +++ LA + M R+ V V + + +++G C+ G
Sbjct: 360 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNG-VCVGRITYTGMIDGLCKNGF 418
Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE-RCEVKKEGVNA 467
++EA ++ M ++G P++ TY +L NG K G +K KE C + + G
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFC---KVGR----FKTAKEIVCRIYRVG--- 468
Query: 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509
L P+ + L C R ++A+ I M G
Sbjct: 469 -------LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 116/556 (20%), Positives = 199/556 (35%), Gaps = 105/556 (18%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M + G+ P + +++ L G ++ KF + DT
Sbjct: 569 MTKVGHHPTFFTYGSLLKGLCKGGH-------------LREAEKFLKSLHAVPAAVDTVM 615
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERI 119
YN +L A G K + LF +M + PD TY +I LC + ++F E
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675
Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
+ + V G + + M + ++ YS +
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735
Query: 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
+ +D LLP N + PN Y L+ GY VS + +
Sbjct: 736 EKTND------LLPEMGNQNG---------GPNLTTYNILLHGYSKRKDVSTSFLLY--- 777
Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
R N PD +T ++V + ++ ++ ++L GV +R T+N+L+ C
Sbjct: 778 RSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCAN 837
Query: 300 LQIDKAKELLREMAD----------DA------------------------KIEPDVVSY 325
+I+ A +L++ M DA I P+ Y
Sbjct: 838 GEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897
Query: 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385
LI+G + D A EM A I P ++ + +++A A + A + ML+
Sbjct: 898 IGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLK 957
Query: 386 ----------------------------------DPRVKVDIVAWNMLVEGYCRMGLVEE 411
+ +K+D+V++N+L+ G C G +
Sbjct: 958 MKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAL 1017
Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPG--EALLLWKEIKERCEVKKEGVNADS 469
A + E MK +GF N TY +L G+ LAR+ A ++ K++ R + ++ DS
Sbjct: 1018 AFELYEEMKGDGFLANATTYKALIRGL-LARETAFSGADIILKDLLARGFITSMSLSQDS 1076
Query: 470 DLPPPLKPDEELLDAL 485
LK E L AL
Sbjct: 1077 H--RNLKMAMEKLKAL 1090
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
+++L+ Y R G+++++ I M GF P+V T ++ + K GE + +W +
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVV---KSGEDVSVWSFL 181
Query: 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
KE L + PD + L ++ F K+ ++ ME+ G P
Sbjct: 182 KEM-------------LKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 228
Query: 515 TKYKKI 520
Y +
Sbjct: 229 VTYNTV 234
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 198/467 (42%), Gaps = 73/467 (15%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P N VL + K +++ M E G P V+T+N M+ C +A
Sbjct: 201 PSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGD------- 253
Query: 116 LERI----LEM---GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168
LER+ LEM I T+ L+ + G +E A MR V
Sbjct: 254 LERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNP 313
Query: 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP------------------PLLPKTFA 210
+E Y + G DD V +++L I P++ LL A
Sbjct: 314 LIEGYCKQ--GLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAA 371
Query: 211 PNSRIYTTLMKGYMNEGR-----------------------------VSDTVRMLGAMRR 241
P+ Y TLM GY+ G+ + ++ + GA R
Sbjct: 372 PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRL 431
Query: 242 QEDNASH---PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
+E+ + PD +TYTT+V VK G++ A +V EM R G+ + Y G +
Sbjct: 432 KEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELR 491
Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
DKA L EM PD+ YN+ IDG + + A+ F ++ G+ P +
Sbjct: 492 LGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHV 551
Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
+YTT+++ + + Q K+A ++DEMLR R+ ++ + +L+ G+ + G +E+A +
Sbjct: 552 TYTTVIRGYLENGQFKMARNLYDEMLR-KRLYPSVITYFVLIYGHAKAGRLEQAFQYSTE 610
Query: 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
MK+ G PNV T+ +L G+ A EA + C++++EG+
Sbjct: 611 MKKRGVRPNVMTHNALLYGMCKAGNIDEAY------RYLCKMEEEGI 651
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 146/368 (39%), Gaps = 43/368 (11%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASG--DDGP--VESVKLFDVVVK--------RVRKFSDP 48
ML +G P ++ + L G DD + S+ DVV ++ KF +
Sbjct: 334 MLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEA 393
Query: 49 DIV------SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKL 102
++ D P YN +++ G + +L ++M PDV+TY ++K
Sbjct: 394 SLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKG 453
Query: 103 CARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA--------------- 147
+ + V + +L GI + + + GD + A
Sbjct: 454 FVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAP 513
Query: 148 -ETIVQAMREGRRDVCKIIRELDLED--YSSENEGDDDDDDEVFEKLLPNS---INPSSE 201
TI +G V +++ ++ + + D V L N + +
Sbjct: 514 DLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLY 573
Query: 202 PPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261
+L K P+ Y L+ G+ GR+ + M+++ P+ +T+ ++ +
Sbjct: 574 DEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKR---GVRPNVMTHNALLYGM 630
Query: 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321
KAG++D A + L +M G+P N+ +Y +L+ C + ++ +L +EM D +IEPD
Sbjct: 631 CKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEML-DKEIEPD 689
Query: 322 VVSYNILI 329
++ L
Sbjct: 690 GYTHRALF 697
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 184/380 (48%), Gaps = 23/380 (6%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLV 113
+P+ +N V+NA GK K + + M +G P+V++YN +I C +
Sbjct: 220 QPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYK 279
Query: 114 --FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
VL+ ++E ++ +TTF L+ + +L + + + M + +DV + ++
Sbjct: 280 ADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLD--QDV-----KPNVI 332
Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
Y+S G + ++ E + S ++ PN Y L+ G+ + +
Sbjct: 333 SYNSLING-LCNGGKISEAI-------SMRDKMVSAGVQPNLITYNALINGFCKNDMLKE 384
Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
+ M G+++ Q + P Y ++ A K G +D + EM R G+ + TYN
Sbjct: 385 ALDMFGSVKGQ---GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441
Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
L+ G C+ I+ AK+L ++ +K PD+V+++IL++G+ +S A EM
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLT--SKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499
Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
G+ P ++Y +MK + K A + +M ++ R+++++ ++N+L++GY + G +E+
Sbjct: 500 GLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559
Query: 412 AKRIIERMKENGFYPNVATY 431
A ++ M E G PN TY
Sbjct: 560 ANMLLNEMLEKGLVPNRITY 579
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 164/365 (44%), Gaps = 59/365 (16%)
Query: 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278
LM + E R +D + M R++ P+ T+ V++AL K G M++AR V+ +M
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRK---IQPNVFTFNVVINALCKTGKMNKARDVMEDMK 250
Query: 279 RIGVPANRITYNILLKGYCQ---QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
G N ++YN L+ GYC+ ++ KA +L+EM ++ + P++ ++NILIDGF
Sbjct: 251 VYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVEN-DVSPNLTTFNILIDGFWKD 309
Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLM-----------------KAFALSSQPKLA-- 376
D+ G++ F EM + + P ISY +L+ K + QP L
Sbjct: 310 DNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITY 369
Query: 377 NKVFDEMLRDPRVK--VDIVA-------------WNMLVEGYCRMGLVEEAKRIIERMKE 421
N + + ++ +K +D+ +NML++ YC++G +++ + E M+
Sbjct: 370 NALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429
Query: 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481
G P+V TY L G+ A L+ ++ + G+ PD
Sbjct: 430 EGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK------GL-----------PDLVT 472
Query: 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDR 541
L + R RKA ++ M + G+ P Y I ++ + + K A+ R
Sbjct: 473 FHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTY-NIVMKGYCKEGNLKAATNMRTQM 531
Query: 542 RRERK 546
+ER+
Sbjct: 532 EKERR 536
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 131/329 (39%), Gaps = 69/329 (20%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
ML P+V +++++++ L G K+ + + R D + + +P+
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGG--------KISEAISMR-----DKMVSAGVQPNLIT 368
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YNA++N K+ L +F + GA P YN++I + + + E +
Sbjct: 369 YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
GI + T+ L+A G++E A+ +
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLF----------------------------- 459
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
D++ K LP+ + + LM+GY +G +L M
Sbjct: 460 ----DQLTSKGLPDLVT------------------FHILMEGYCRKGESRKAAMLLKEMS 497
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYNILLKGYCQQ 299
+ P H+TY V+ K G++ A + +M + + N +YN+LL+GY Q+
Sbjct: 498 KM---GLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQK 554
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNIL 328
+++ A LL EM + + P+ ++Y I+
Sbjct: 555 GKLEDANMLLNEMLEKGLV-PNRITYEIV 582
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 116/464 (25%), Positives = 200/464 (43%), Gaps = 67/464 (14%)
Query: 30 ESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
E+++ F + KR R F P T + N +L+ A LGK + F M GA
Sbjct: 210 EAIQCFSKM-KRFRVF----------PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGA 258
Query: 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149
+P V TYN+MI + + E + G+ T+ S++ + G L+
Sbjct: 259 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 318
Query: 150 IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209
+ M +D+C E D+ Y++ F K I +
Sbjct: 319 FFEEM----KDMCC---EPDVITYNAL--------INCFCKFGKLPIGLEFYREMKGNGL 363
Query: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
PN Y+TL+ + EG + ++ MRR P+ TYT+++ A K G++
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRV---GLVPNEYTYTSLIDANCKIGNLSD 420
Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
A ++ EM ++GV N +TY L+ G C ++ +A+EL +M D A + P++ SYN LI
Sbjct: 421 AFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM-DTAGVIPNLASYNALI 479
Query: 330 DGFILIDDSAGALTFFNEMRARGIAP---------------------------------- 355
GF+ + AL NE++ RGI P
Sbjct: 480 HGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIK 539
Query: 356 -TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
+ YTTLM A+ S P + DEM ++ ++V +V + +L++G C+ LV +A
Sbjct: 540 ANSLIYTTLMDAYFKSGNPTEGLHLLDEM-KELDIEVTVVTFCVLIDGLCKNKLVSKAVD 598
Query: 415 IIERMKEN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
R+ + G N A + ++ +G+ + A L++++ ++
Sbjct: 599 YFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 642
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 181/401 (45%), Gaps = 33/401 (8%)
Query: 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLL 112
+PD YNA++N GK L+ + +M G KP+V++Y+ ++ C + +
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
F ++ + +G+ T+ SL+ A G+L A R G ++ ++ E ++
Sbjct: 388 KFYVD-MRRVGLVPNEYTYTSLIDANCKIGNLS------DAFRLG-NEMLQVGVEWNVVT 439
Query: 173 YSSENEGDDD-----DDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
Y++ +G D + +E+F K+ + PN Y L+ G++
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGV-------------IPNLASYNALIHGFVKAK 486
Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
+ + +L ++ + PD + Y T + L ++ A+ V+ EM G+ AN +
Sbjct: 487 NMDRALELLNELKGR---GIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSL 543
Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
Y L+ Y + + LL EM + IE VV++ +LIDG + A+ +FN
Sbjct: 544 IYTTLMDAYFKSGNPTEGLHLLDEMK-ELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 602
Query: 348 MRAR-GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406
+ G+ +T ++ +Q + A +F++M++ V D A+ L++G +
Sbjct: 603 ISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP-DRTAYTSLMDGNFKQ 661
Query: 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
G V EA + ++M E G ++ Y SL G+S + +A
Sbjct: 662 GNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 702
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 182/413 (44%), Gaps = 34/413 (8%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M +G P+V ++ST+V A +G ++ F V ++RV P+
Sbjct: 358 MKGNGLKPNVVSYSTLVD---AFCKEGMMQQAIKFYVDMRRV----------GLVPNEYT 404
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
Y ++++A +G +L ++M + G + +V+TY +I A R + ++
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMD 464
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
G+ + ++ +L+ +V +++ A ++ ++ GR I+ DL Y + G
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELK-GRG-----IKP-DLLLYGTFIWGL 517
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
+ K++ N + NS IYTTLM Y G ++ + +L M+
Sbjct: 518 CSLEKIEAAKVVMNEMKECG--------IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMK 569
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-IGVPANRITYNILLKGYCQQ 299
+ + VT+ ++ L K + +A ++ G+ AN + ++ G C+
Sbjct: 570 ELDIEVTV---VTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 626
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
Q++ A L +M + PD +Y L+DG + AL ++M G+ ++
Sbjct: 627 NQVEAATTLFEQMVQKGLV-PDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLA 685
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412
YT+L+ + +Q + A +EM+ + +++ ++L + Y +G ++EA
Sbjct: 686 YTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHY-ELGCIDEA 737
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/276 (19%), Positives = 99/276 (35%), Gaps = 53/276 (19%)
Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
N P + + S L+ G ++ A Q ++M R
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRF------------------------ 221
Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
++ P S N L+ F + + FF +M G PT +Y ++
Sbjct: 222 ------------RVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMI 269
Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
+ A +F+EM V D V +N +++G+ ++G +++ E MK+
Sbjct: 270 DCMCKEGDVEAARGLFEEMKFRGLVP-DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 328
Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484
P+V TY +L N K L ++E+K LKP+
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGN----------------GLKPNVVSYST 372
Query: 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
L D + ++A++ M G+ PN+ Y +
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 408
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 26/275 (9%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P+ A+YNA+++ + L+L +++ G KPD+L Y I + V
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV-----CKIIREL-- 168
+ + E GI + +L+ AY G+ ++ M+E +V C +I L
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589
Query: 169 -----DLEDYSS--ENEGDDDDDDEVFEKLLP-----NSINPSSE--PPLLPKTFAPNSR 214
DY + N+ + +F ++ N + ++ ++ K P+
Sbjct: 590 NKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 649
Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAMR-RQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
YT+LM G +G V + + A+R + + D + YT++V L + +AR
Sbjct: 650 AYTSLMDGNFKQGNVLEAL----ALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSF 705
Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308
L EM G+ + + +LK + + ID+A EL
Sbjct: 706 LEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/485 (24%), Positives = 208/485 (42%), Gaps = 45/485 (9%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P YN +++ G P+K ++ ++M +P ++T+N ++K +A V
Sbjct: 247 PSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENV 306
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIA----ETIVQAMREGRRDVCKIIRELDLE 171
L+ + ++G TF L Y E A ET V + + C I+
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLN---- 362
Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
+ EG + +E+ + + K PN IY T++ GY +G +
Sbjct: 363 --ALCKEGKIEKAEEILGREMA-------------KGLVPNEVIYNTMIDGYCRKGDLVG 407
Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291
+ AM +Q PDH+ Y ++ + G M+ A + + +M GV + TYNI
Sbjct: 408 ARMKIEAMEKQ---GMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNI 464
Query: 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351
L+ GY ++ + DK ++L+EM D+ + P+VVSY LI+ A +M R
Sbjct: 465 LIGGYGRKYEFDKCFDILKEMEDNGTM-PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDR 523
Query: 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411
G++P Y L+ + + A + EML+ +++++V +N L++G G + E
Sbjct: 524 GVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKG-IELNLVTYNTLIDGLSMTGKLSE 582
Query: 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVK---------- 461
A+ ++ + G P+V TY SL +G A + L++E+K R +K
Sbjct: 583 AEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMK-RSGIKPTLKTYHLLI 641
Query: 462 ----KEGVNADSDL--PPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515
KEG+ L LKPD + + + KA + M E I +KT
Sbjct: 642 SLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKT 701
Query: 516 KYKKI 520
Y +
Sbjct: 702 TYNSL 706
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 120/509 (23%), Positives = 215/509 (42%), Gaps = 56/509 (11%)
Query: 52 SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
SD +P Y + A L K L+LF++M P V YNV+I + R +
Sbjct: 173 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND 232
Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
+ + +L + + T+ +L+ Y G+ E + + + M+ + I L+
Sbjct: 233 AEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLK 292
Query: 172 DYSSENEGDDDDDDEVFEKL-----LPN-----------SINPSSEPPLLPKTFAPNSRI 215
G +D + V +++ +P+ S N +E L A +S +
Sbjct: 293 GLF--KAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGV 350
Query: 216 ----YTT--LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR 269
YT L+ EG++ +LG R+ P+ V Y T++ + G +
Sbjct: 351 KMNAYTCSILLNALCKEGKIEKAEEILG---REMAKGLVPNEVIYNTMIDGYCRKGDLVG 407
Query: 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
AR + M + G+ + + YN L++ +C+ +++ A++ + +M + P V +YNILI
Sbjct: 408 ARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKG-VSPSVETYNILI 466
Query: 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389
G+ + EM G P +SY TL+ S+ L ++ + D V
Sbjct: 467 GGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKL-LEAQIVKRDMEDRGV 525
Query: 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA-- 447
+ +NML++G C G +E+A R + M + G N+ TY +L +G+S+ K EA
Sbjct: 526 SPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAED 585
Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507
LLL E+ ++G LKPD ++L A ++ + + M+
Sbjct: 586 LLL--------EISRKG----------LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKR 627
Query: 508 HGIPPNKTKYK-------KIYVEMHSRMF 529
GI P Y K +E+ R+F
Sbjct: 628 SGIKPTLKTYHLLISLCTKEGIELTERLF 656
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 32/337 (9%)
Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
+L F P+ +Y ++ + ++SD + L R + + +P Y ++ L K
Sbjct: 170 ILESDFRPSKFMYGKAIQAAV---KLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCK 226
Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
M+ A Q+ EM + + ITYN L+ GYC+ +K+ ++ M D IEP ++
Sbjct: 227 GKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD-HIEPSLI 285
Query: 324 SYNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380
++N L+ G +++D+ L EM+ G P +++ L ++ + + + A V+
Sbjct: 286 TFNTLLKGLFKAGMVEDAENVL---KEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVY 342
Query: 381 DEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG--- 437
+ + D VK++ ++L+ C+ G +E+A+ I+ R G PN Y ++ +G
Sbjct: 343 ETAV-DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCR 401
Query: 438 ----------ISLARKPG---EALLLWKEIKERCEVKKEGVNADSDLP----PPLKPDEE 480
I K G + L I+ CE+ E NA+ ++ + P E
Sbjct: 402 KGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCEL-GEMENAEKEVNKMKLKGVSPSVE 460
Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
+ L R F K +I+ ME++G PN Y
Sbjct: 461 TYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSY 497
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/404 (23%), Positives = 175/404 (43%), Gaps = 26/404 (6%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
KPD AYN ++ LG+ + + ++M G P V TYN++I R
Sbjct: 421 KPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFD 480
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+L+ + + G + ++ +L+ L A+ + + M + R V +R ++
Sbjct: 481 ILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMED--RGVSPKVRIYNMLIDG 538
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
++G +D + S E +L K N Y TL+ G G++S+
Sbjct: 539 CCSKGKIED-----------AFRFSKE--MLKKGIELNLVTYNTLIDGLSMTGKLSEAED 585
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L + R+ PD TY +++S AG++ R + EM R G+ TY++L+
Sbjct: 586 LLLEISRK---GLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI- 641
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
C + I+ + L EM+ ++PD++ YN ++ + + D A +M + I
Sbjct: 642 SLCTKEGIELTERLFGEMS----LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIG 697
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
K +Y +L+ + + DEM R+ + D +N++V+G+C + A
Sbjct: 698 LDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEAD--TYNIIVKGHCEVKDYMSAY 755
Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
M+E GF +V L +G+ + EA ++ E+ R
Sbjct: 756 VWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGR 799
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/408 (22%), Positives = 168/408 (41%), Gaps = 58/408 (14%)
Query: 5 GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
G P V+ ++ ++ G E K FD++ ++ D + + P+ +Y +
Sbjct: 454 GVSPSVETYNILIG-----GYGRKYEFDKCFDIL----KEMED----NGTMPNVVSYGTL 500
Query: 65 LNACANLGKPKKFLQ---LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121
+N L K K L+ + M + G P V YN++I C + + +L+
Sbjct: 501 INC---LCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLK 557
Query: 122 MGITLCMTTFQSLVAAYVGFGDLEIAE-TIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
GI L + T+ +L+ G L AE +++ R+G + D+ Y+S G
Sbjct: 558 KGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKP--------DVFTYNSLISGY 609
Query: 181 DDDDD-----EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
+ ++E++ + I P+ + Y L+ EG + T R+
Sbjct: 610 GFAGNVQRCIALYEEMKRSGIKPTL-------------KTYHLLISLCTKEG-IELTERL 655
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
G M + PD + Y V+ G M++A + +M + ++ TYN L+ G
Sbjct: 656 FGEMSLK------PDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILG 709
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
+ ++ + + L+ EM + ++EP+ +YNI++ G + D A ++ EM+ +G
Sbjct: 710 QLKVGKLCEVRSLIDEM-NAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLL 768
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDE----MLRDPRVKVDIVAWNML 399
L+ + K A V E ML D V D+ A L
Sbjct: 769 DVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDVTVDEDLSATEKL 816
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 143/355 (40%), Gaps = 36/355 (10%)
Query: 4 SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
+G +P+V ++ T+++ L KL + + + R D + P YN
Sbjct: 488 NGTMPNVVSYGTLINCLCKGS--------KLLEAQIVK-RDMEDRGV----SPKVRIYNM 534
Query: 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
+++ C + GK + + +M + G + +++TYN +I + + +L I G
Sbjct: 535 LIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594
Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
+ + T+ SL++ Y G+++ + + M+ R + ++ L EG
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMK--RSGIKPTLKTYHLLISLCTKEGI--- 649
Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
E+ E+L + P+ +Y ++ Y G D + ++
Sbjct: 650 --ELTERLFGE------------MSLKPDLLVYNGVLHCYAVHG---DMEKAFNLQKQMI 692
Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
+ + D TY +++ +K G + R ++ EM + TYNI++KG+C+
Sbjct: 693 EKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYM 752
Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
A REM + + DV N L+ G S A +EM R + +
Sbjct: 753 SAYVWYREMQEKGFL-LDVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDVTV 806
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 19/157 (12%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
ML+ G ++ ++T++ L+ +G E D++++ RK KPD
Sbjct: 555 MLKKGIELNLVTYNTLIDGLSMTGKLSEAE-----DLLLEISRK--------GLKPDVFT 601
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN++++ G ++ + L+++M G KP + TY+++I LC + + + ER+
Sbjct: 602 YNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG-----IELTERLF 656
Query: 121 -EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156
EM + + + ++ Y GD+E A + + M E
Sbjct: 657 GEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIE 693
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 112/452 (24%), Positives = 207/452 (45%), Gaps = 28/452 (6%)
Query: 29 VESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88
V ++ D + P++ P A ++ L+A + GKP LQ+F +M
Sbjct: 102 VSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLK 161
Query: 89 AKPDVLTYNVMIKLCARASRKHLLVF---VLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
KP++LT N ++ R + V + ++++G++L + TF LV Y G LE
Sbjct: 162 LKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLE 221
Query: 146 IAETIVQAM-REGRRDVCKIIRELDLEDYSSENEGDDDDD---DEVFEKLLPNSINPSSE 201
A +++ M E + + + L+ S + D + D L+PN + ++
Sbjct: 222 DALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNL 281
Query: 202 ----------------PPLLPKT-FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED 244
L+ +T P+ Y L+ G N G + + + ++ AM+ +
Sbjct: 282 VYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLK- 340
Query: 245 NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304
PD VTY T++ + G AR+++ +M GV AN++T+NI LK C++ + +
Sbjct: 341 --LQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREA 398
Query: 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364
++E+ D PD+V+Y+ LI ++ + D +GAL EM +GI I+ T++
Sbjct: 399 VTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTIL 458
Query: 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
A + A+ + + + + VD V + L+ G+ R VE+A + + MK+
Sbjct: 459 DALCKERKLDEAHNLLNSAHKRGFI-VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKI 517
Query: 425 YPNVATYGSLANGISLARKPGEALLLWKEIKE 456
P V+T+ SL G+ K A+ + E+ E
Sbjct: 518 TPTVSTFNSLIGGLCHHGKTELAMEKFDELAE 549
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 149/317 (47%), Gaps = 30/317 (9%)
Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK---AGSM 267
P+ ++ + Y++EG+ +++ M R + P+ +T T++ LV+ + S+
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLK---LKPNLLTCNTLLIGLVRYPSSFSI 185
Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
AR+V +M +IGV N T+N+L+ GYC + +++ A +L M + K+ PD V+YN
Sbjct: 186 SSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNT 245
Query: 328 LIDGFILIDDSAGALTFFNE----MRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
++ G L+ E M+ G+ P +++Y L+ + K A ++ E+
Sbjct: 246 ILKAM----SKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIV-EL 300
Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK 443
++ V D+ +N+L+ G C G + E +++ MK P+V TY +L +G
Sbjct: 301 MKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGL 360
Query: 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503
EA L +++ E VK V + L K ++ R A RK E+V
Sbjct: 361 SLEARKLMEQM-ENDGVKANQVTHNISLKWLCKEEK-----------REAVTRKVKELV- 407
Query: 504 CMEEHGIPPNKTKYKKI 520
+ HG P+ Y +
Sbjct: 408 --DMHGFSPDIVTYHTL 422
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 166/365 (45%), Gaps = 22/365 (6%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
+PD YN +++ C LG + +L +QM G K + +T+N+ +K LC R+ +
Sbjct: 342 QPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTR 401
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
V E + G + + T+ +L+ AY+ GDL A +++ M + + I L+
Sbjct: 402 KVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDAL 461
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
E + D+ + L NS + + F + Y TL+ G+ E +V +
Sbjct: 462 CKERKLDEAHN-------LLNSAH--------KRGFIVDEVTYGTLIMGFFREEKVEKAL 506
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
M M++ + P T+ +++ L G + A + E+ G+ + T+N ++
Sbjct: 507 EMWDEMKKVKIT---PTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSII 563
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
GYC++ +++KA E E + +PD + NIL++G + AL FFN +
Sbjct: 564 LGYCKEGRVEKAFEFYNESIKHS-FKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEERE 622
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
T ++Y T++ AF + K A + EM + ++ D +N + G + E
Sbjct: 623 VDT-VTYNTMISAFCKDKKLKEAYDLLSEM-EEKGLEPDRFTYNSFISLLMEDGKLSETD 680
Query: 414 RIIER 418
++++
Sbjct: 681 ELLKK 685
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/481 (20%), Positives = 192/481 (39%), Gaps = 65/481 (13%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLVF 114
P+ YN ++ LG K+ Q+ + M + PD+ TYN++I LC S + L
Sbjct: 273 PNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLE- 331
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++ + + + + T+ +L+ G A +++ M ++ + L+
Sbjct: 332 LMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLC 391
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
E + + ++ + + F+P+ Y TL+K Y+ G +S +
Sbjct: 392 KEEKRE--------------AVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALE 437
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
M MR + +T T++ AL K +D A +L + G + +TY L+
Sbjct: 438 M---MREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIM 494
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF--------------------IL 334
G+ ++ +++KA E+ EM KI P V ++N LI G +L
Sbjct: 495 GFFREEKVEKALEMWDEMKK-VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLL 553
Query: 335 IDDSA---------------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379
DDS A F+NE P + L+ + A
Sbjct: 554 PDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNF 613
Query: 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439
F+ ++ + +VD V +N ++ +C+ ++EA ++ M+E G P+ TY S + +
Sbjct: 614 FNTLIEER--EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLM 671
Query: 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL--------DALADICVR 491
K E L K+ + K + +++ P +E L D + ++C R
Sbjct: 672 EDGKLSETDELLKKFSGKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDVIDELCSR 731
Query: 492 A 492
Sbjct: 732 G 732
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 123/318 (38%), Gaps = 50/318 (15%)
Query: 5 GYLPHVKAWSTVVSRLAASGD-DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNA 63
G+ P + + T++ GD G +E +R+ I K +T N
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALE----------MMREMGQKGI----KMNTITLNT 456
Query: 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
+L+A K + L + H+ G D +TY +I R + + + + + ++
Sbjct: 457 ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516
Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN------ 177
IT ++TF SL+ G E+A + E L D S+ N
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGL----------LPDDSTFNSIILGY 566
Query: 178 --EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
EG + E + + + +S F P++ L+ G EG +
Sbjct: 567 CKEGRVEKAFEFYNESIKHS-------------FKPDNYTCNILLNGLCKEGMTEKALNF 613
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
+ + + D VTY T++SA K + A +L+EM G+ +R TYN +
Sbjct: 614 FNTLIEERE----VDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISL 669
Query: 296 YCQQLQIDKAKELLREMA 313
+ ++ + ELL++ +
Sbjct: 670 LMEDGKLSETDELLKKFS 687
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 18/278 (6%)
Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302
+ N PD +T+ ++++ + G + AR + EMT + + +YN LL C+ Q+
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQM 390
Query: 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362
D A E+L +M +I P+VVSY+ +IDGF AL F EMR GIA ++SY T
Sbjct: 391 DLAFEILAQMPVK-RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNT 449
Query: 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422
L+ + + + A + EM +K D+V +N L+ GY + G +E K++ MK
Sbjct: 450 LLSIYTKVGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE 508
Query: 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482
PN+ TY +L +G S EA+ +++E K L+ D L
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKS----------------AGLRADVVLY 552
Query: 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
AL D + A+ ++ M + GI PN Y I
Sbjct: 553 SALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSI 590
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 168/376 (44%), Gaps = 56/376 (14%)
Query: 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF-VLER 118
A++A+++A G ++ + +F+ M E+G +P+++TYN +I C + + V +
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
+ G+ TF SL+A G E A + M R
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR-------------------- 369
Query: 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGA 238
+ +VF Y TL+ G++ +L
Sbjct: 370 ----IEQDVFS--------------------------YNTLLDAICKGGQMDLAFEILAQ 399
Query: 239 MRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
M + P+ V+Y+TV+ KAG D A + EM +G+ +R++YN LL Y +
Sbjct: 400 MPVKR---IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTK 456
Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
+ ++A ++LREMA I+ DVV+YN L+ G+ F EM+ + P +
Sbjct: 457 VGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLL 515
Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
+Y+TL+ ++ K A ++F E + ++ D+V ++ L++ C+ GLV A +I+
Sbjct: 516 TYSTLIDGYSKGGLYKEAMEIFRE-FKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 419 MKENGFYPNVATYGSL 434
M + G PNV TY S+
Sbjct: 575 MTKEGISPNVVTYNSI 590
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 180/402 (44%), Gaps = 69/402 (17%)
Query: 5 GYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV 64
GY V A+S ++S SG E++ +F+ + + +P+ YNAV
Sbjct: 263 GYGNTVYAFSALISAYGRSGLH--EEAISVFNSMKEY-----------GLRPNLVTYNAV 309
Query: 65 LNACANLG-KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123
++AC G + K+ + FD+M G +PD +T+N ++ +C+R + + +
Sbjct: 310 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR 369
Query: 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183
I + ++ +L+ A G +++A I+ M
Sbjct: 370 IEQDVFSYNTLLDAICKGGQMDLAFEILAQM----------------------------- 400
Query: 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243
++++PN ++ Y+T++ G+ GR + + + G MR
Sbjct: 401 ---PVKRIMPNVVS------------------YSTVIDGFAKAGRFDEALNLFGEMRYL- 438
Query: 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303
D V+Y T++S K G + A +L EM +G+ + +TYN LL GY +Q + D
Sbjct: 439 --GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496
Query: 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363
+ K++ EM + + P++++Y+ LIDG+ A+ F E ++ G+ + Y+ L
Sbjct: 497 EVKKVFTEMKRE-HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSAL 555
Query: 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
+ A + A + DEM ++ + ++V +N +++ + R
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGR 596
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 114/253 (45%), Gaps = 22/253 (8%)
Query: 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVL 116
D +YN +L+A G+ ++ QM P+V++Y+ +I A+A R + +
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLF 432
Query: 117 ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDYS 174
+ +GI L ++ +L++ Y G E A I++ M ++DV + L Y
Sbjct: 433 GEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDV--VTYNALLGGYG 490
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+G D+ +VF ++ + PN Y+TL+ GY G + +
Sbjct: 491 --KQGKYDEVKKVFTEMKREHV-------------LPNLLTYSTLIDGYSKGGLYKEAME 535
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+ R + D V Y+ ++ AL K G + A ++ EMT+ G+ N +TYN ++
Sbjct: 536 IF---REFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592
Query: 295 GYCQQLQIDKAKE 307
+ + +D++ +
Sbjct: 593 AFGRSATMDRSAD 605
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452
+ A++ L+ Y R GL EEA + MKE G PN+ TY ++ + G+ + +K
Sbjct: 268 VYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDAC------GKGGMEFK 321
Query: 453 EIKERC-EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511
++ + E+++ GV +PD ++L +C R + A + M I
Sbjct: 322 QVAKFFDEMQRNGV----------QPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIE 371
Query: 512 PNKTKYKKI 520
+ Y +
Sbjct: 372 QDVFSYNTL 380
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M R LP++ +ST++ + G L+ ++ R+F + + D
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGG---------LYKEAMEIFREFKSAGL----RADVVL 551
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107
Y+A+++A G + L D+M + G P+V+TYN +I R++
Sbjct: 552 YSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSA 598
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P+ Y+ +++ + G K+ +++F + G + DV+ Y+ +I + V +
Sbjct: 512 PNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSL 571
Query: 116 LERILEMGITLCMTTFQSLV------------AAYVGFGDLEIAETIVQAM--REGRRDV 161
++ + + GI+ + T+ S++ A Y G L + + + A+ EG R V
Sbjct: 572 IDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNR-V 630
Query: 162 CKIIRELDLEDYSSENEGDDDDDD---------EVFEKLLPNSINPS 199
++ +L E S N D ++ EVF K+ I P+
Sbjct: 631 IQLFGQLTTE---SNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPN 674
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,868,667
Number of Sequences: 539616
Number of extensions: 9216129
Number of successful extensions: 44212
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 33123
Number of HSP's gapped (non-prelim): 3946
length of query: 583
length of database: 191,569,459
effective HSP length: 123
effective length of query: 460
effective length of database: 125,196,691
effective search space: 57590477860
effective search space used: 57590477860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)