Query 007970
Match_columns 583
No_of_seqs 555 out of 3554
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 17:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.9E-62 6.2E-67 512.9 59.8 469 8-527 368-859 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 1.3E-63 2.8E-68 534.1 43.7 489 7-569 149-662 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.4E-61 7.3E-66 504.8 58.4 487 1-558 396-906 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 5.1E-60 1.1E-64 506.4 44.2 500 2-571 214-734 (857)
5 PLN03081 pentatricopeptide (PP 100.0 8.3E-59 1.8E-63 485.4 42.4 443 6-513 119-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.8E-58 1.7E-62 478.1 43.0 481 7-570 84-570 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-29 1.1E-33 273.9 54.7 437 54-559 461-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-27 2.5E-32 263.2 54.6 267 212-507 532-798 (899)
9 PRK11447 cellulose synthase su 99.9 1.2E-21 2.5E-26 215.9 52.7 449 9-515 61-671 (1157)
10 PRK11447 cellulose synthase su 99.9 3.4E-21 7.3E-26 212.3 51.9 425 23-508 160-700 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.9E-22 4.2E-27 188.4 33.3 406 59-516 83-491 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 4.3E-21 9.2E-26 179.5 34.4 427 61-556 51-480 (966)
13 PRK11788 tetratricopeptide rep 99.9 2.7E-20 6E-25 183.2 35.4 279 211-515 67-354 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-18 3.4E-23 179.6 49.6 258 225-508 306-571 (615)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.6E-18 9.9E-23 176.2 50.1 432 60-558 129-568 (615)
16 PRK11788 tetratricopeptide rep 99.9 1.9E-19 4.1E-24 177.2 37.0 297 102-457 44-347 (389)
17 PRK15174 Vi polysaccharide exp 99.9 5.6E-18 1.2E-22 174.7 46.1 333 60-457 44-381 (656)
18 PRK15174 Vi polysaccharide exp 99.9 8.7E-18 1.9E-22 173.3 46.0 332 95-507 44-380 (656)
19 PRK10049 pgaA outer membrane p 99.9 1.4E-17 3.1E-22 175.6 48.5 409 14-518 19-464 (765)
20 PRK09782 bacteriophage N4 rece 99.9 7.3E-17 1.6E-21 170.2 50.7 213 300-558 490-703 (987)
21 KOG2002 TPR-containing nuclear 99.9 1.5E-17 3.3E-22 164.2 41.1 499 9-559 269-796 (1018)
22 PRK10049 pgaA outer membrane p 99.9 6.2E-17 1.3E-21 170.8 47.8 405 55-558 12-453 (765)
23 PRK14574 hmsH outer membrane p 99.8 8.1E-16 1.8E-20 159.0 50.3 438 20-519 44-522 (822)
24 PRK09782 bacteriophage N4 rece 99.8 3.5E-15 7.5E-20 157.7 51.2 445 10-517 181-713 (987)
25 KOG2002 TPR-containing nuclear 99.8 2.9E-15 6.4E-20 148.3 40.0 444 55-558 267-742 (1018)
26 PRK14574 hmsH outer membrane p 99.8 5.2E-14 1.1E-18 145.8 46.9 402 57-527 33-462 (822)
27 KOG0495 HAT repeat protein [RN 99.8 3.7E-13 7.9E-18 127.8 44.5 480 28-569 392-890 (913)
28 KOG2076 RNA polymerase III tra 99.7 5.5E-13 1.2E-17 131.6 45.7 470 10-510 139-657 (895)
29 KOG0495 HAT repeat protein [RN 99.7 1.5E-12 3.3E-17 123.7 44.7 473 28-568 362-855 (913)
30 KOG2003 TPR repeat-containing 99.7 2.2E-14 4.7E-19 130.2 30.5 456 17-527 208-706 (840)
31 KOG2003 TPR repeat-containing 99.7 4.9E-14 1.1E-18 128.0 30.7 405 99-558 207-686 (840)
32 KOG4422 Uncharacterized conser 99.7 2.8E-12 6.1E-17 115.9 40.9 370 7-457 204-590 (625)
33 KOG4422 Uncharacterized conser 99.7 2.7E-13 5.8E-18 122.4 34.1 326 93-458 116-463 (625)
34 KOG2076 RNA polymerase III tra 99.7 1.3E-12 2.8E-17 129.1 38.0 270 212-505 206-509 (895)
35 KOG1915 Cell cycle control pro 99.6 2.7E-10 5.8E-15 104.7 46.3 485 11-559 74-590 (677)
36 KOG1915 Cell cycle control pro 99.6 1.4E-11 3.1E-16 112.9 37.9 371 92-508 72-466 (677)
37 PRK10747 putative protoheme IX 99.6 1.5E-12 3.3E-17 126.8 33.2 281 226-558 97-387 (398)
38 PF13429 TPR_15: Tetratricopep 99.6 4.1E-15 8.9E-20 138.4 13.5 259 218-505 13-274 (280)
39 PF13429 TPR_15: Tetratricopep 99.6 3E-15 6.5E-20 139.4 12.3 253 256-535 13-268 (280)
40 PRK10747 putative protoheme IX 99.6 5.9E-12 1.3E-16 122.7 34.8 261 216-507 121-389 (398)
41 TIGR00540 hemY_coli hemY prote 99.6 3E-12 6.5E-17 125.5 32.9 288 224-557 95-395 (409)
42 TIGR00540 hemY_coli hemY prote 99.6 1.1E-11 2.3E-16 121.6 34.9 291 105-457 96-399 (409)
43 KOG1155 Anaphase-promoting com 99.6 2.8E-10 6E-15 104.5 40.6 330 124-507 160-494 (559)
44 COG2956 Predicted N-acetylgluc 99.6 2.5E-11 5.5E-16 106.0 30.9 293 106-457 48-347 (389)
45 KOG0547 Translocase of outer m 99.6 4.2E-11 9.2E-16 110.4 33.6 226 295-558 335-563 (606)
46 KOG1126 DNA-binding cell divis 99.6 8.9E-13 1.9E-17 126.2 23.7 288 227-575 333-626 (638)
47 KOG1155 Anaphase-promoting com 99.6 2.8E-10 6.1E-15 104.4 38.4 279 207-507 256-535 (559)
48 KOG0547 Translocase of outer m 99.6 1.7E-10 3.8E-15 106.4 36.6 220 261-507 336-565 (606)
49 KOG1126 DNA-binding cell divis 99.6 2.6E-12 5.6E-17 123.0 24.7 283 108-457 334-620 (638)
50 COG2956 Predicted N-acetylgluc 99.5 3.7E-11 8.1E-16 105.0 28.6 292 179-507 49-346 (389)
51 COG3071 HemY Uncharacterized e 99.5 5.5E-10 1.2E-14 100.9 33.5 287 106-457 97-390 (400)
52 COG3071 HemY Uncharacterized e 99.5 3.7E-10 8E-15 102.0 32.0 271 226-528 97-374 (400)
53 KOG1173 Anaphase-promoting com 99.5 2.1E-09 4.5E-14 101.4 37.7 465 10-520 16-528 (611)
54 KOG1156 N-terminal acetyltrans 99.5 1.6E-08 3.4E-13 97.1 42.0 439 10-510 8-470 (700)
55 KOG2047 mRNA splicing factor [ 99.4 3.6E-08 7.8E-13 94.5 42.0 483 13-569 172-699 (835)
56 KOG4318 Bicoid mRNA stability 99.4 3.3E-10 7.1E-15 111.9 29.2 438 1-507 16-556 (1088)
57 KOG1173 Anaphase-promoting com 99.4 1.5E-09 3.3E-14 102.2 32.2 288 124-489 240-532 (611)
58 TIGR02521 type_IV_pilW type IV 99.4 4.8E-10 1E-14 101.9 27.1 201 212-420 30-230 (234)
59 TIGR02521 type_IV_pilW type IV 99.4 6.8E-10 1.5E-14 100.9 27.5 201 286-507 31-231 (234)
60 KOG3785 Uncharacterized conser 99.4 4.4E-09 9.5E-14 93.3 30.6 397 64-518 63-498 (557)
61 KOG2376 Signal recognition par 99.4 2.3E-08 4.9E-13 95.0 37.2 467 18-565 20-524 (652)
62 KOG1156 N-terminal acetyltrans 99.4 1.9E-08 4.1E-13 96.6 36.6 433 57-558 7-465 (700)
63 KOG3785 Uncharacterized conser 99.4 1.4E-09 3E-14 96.4 27.0 411 19-515 66-521 (557)
64 PRK12370 invasion protein regu 99.4 6.4E-10 1.4E-14 113.4 29.2 234 9-314 255-501 (553)
65 KOG2047 mRNA splicing factor [ 99.4 5.9E-07 1.3E-11 86.5 46.1 408 59-513 103-583 (835)
66 PRK12370 invasion protein regu 99.3 1.8E-09 3.9E-14 110.2 29.7 232 249-507 254-501 (553)
67 KOG1174 Anaphase-promoting com 99.3 1.2E-07 2.5E-12 86.3 36.6 275 208-515 227-505 (564)
68 KOG1129 TPR repeat-containing 99.3 3E-10 6.4E-15 99.5 19.4 235 212-457 222-458 (478)
69 KOG1840 Kinesin light chain [C 99.3 3.8E-09 8.2E-14 102.7 28.9 245 251-506 199-477 (508)
70 PF12569 NARP1: NMDA receptor- 99.3 2.4E-07 5.2E-12 91.5 41.4 184 269-459 129-336 (517)
71 KOG4318 Bicoid mRNA stability 99.3 9.1E-10 2E-14 108.9 24.2 67 79-146 11-77 (1088)
72 KOG4162 Predicted calmodulin-b 99.3 7.8E-08 1.7E-12 94.4 36.3 411 88-556 318-778 (799)
73 KOG1174 Anaphase-promoting com 99.3 5.1E-07 1.1E-11 82.2 37.2 277 222-528 205-484 (564)
74 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.4E-16 80.5 5.8 50 56-105 1-50 (50)
75 KOG1129 TPR repeat-containing 99.3 1E-09 2.3E-14 96.1 19.1 232 255-513 227-461 (478)
76 KOG4340 Uncharacterized conser 99.3 5.5E-08 1.2E-12 84.5 29.2 332 61-420 13-373 (459)
77 PF13041 PPR_2: PPR repeat fam 99.2 4.7E-11 1E-15 77.5 6.9 50 391-440 1-50 (50)
78 COG3063 PilF Tfp pilus assembl 99.2 3.8E-08 8.2E-13 82.6 25.2 210 214-433 36-245 (250)
79 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.7E-13 99.1 26.0 211 58-312 199-435 (508)
80 PF12569 NARP1: NMDA receptor- 99.2 1.5E-07 3.3E-12 92.8 33.8 262 218-510 9-293 (517)
81 KOG4162 Predicted calmodulin-b 99.2 9.3E-07 2E-11 87.1 36.1 409 55-507 320-782 (799)
82 PRK11189 lipoprotein NlpI; Pro 99.1 8.5E-08 1.8E-12 89.5 27.8 220 227-457 40-265 (296)
83 COG3063 PilF Tfp pilus assembl 99.1 9.7E-08 2.1E-12 80.2 24.6 210 288-520 37-246 (250)
84 cd05804 StaR_like StaR_like; a 99.1 1.1E-07 2.5E-12 92.3 29.5 307 93-457 6-336 (355)
85 KOG2376 Signal recognition par 99.1 2.3E-06 5.1E-11 81.8 34.4 442 6-505 42-517 (652)
86 PRK11189 lipoprotein NlpI; Pro 99.1 2.3E-07 4.9E-12 86.7 27.6 207 213-433 64-275 (296)
87 cd05804 StaR_like StaR_like; a 99.1 2.7E-06 6E-11 82.6 35.9 309 57-422 5-336 (355)
88 KOG0548 Molecular co-chaperone 99.1 3.1E-06 6.8E-11 80.1 33.7 407 65-520 9-465 (539)
89 PF04733 Coatomer_E: Coatomer 99.0 4.5E-08 9.9E-13 89.9 18.8 257 220-515 8-270 (290)
90 KOG4340 Uncharacterized conser 99.0 3.5E-06 7.7E-11 73.5 28.0 293 95-453 12-335 (459)
91 KOG0624 dsRNA-activated protei 99.0 5.4E-06 1.2E-10 73.9 29.6 329 55-457 35-370 (504)
92 KOG0548 Molecular co-chaperone 98.9 2.9E-05 6.3E-10 73.8 34.6 402 18-457 10-455 (539)
93 KOG1128 Uncharacterized conser 98.9 1.3E-06 2.8E-11 85.6 24.2 225 208-458 393-617 (777)
94 KOG1127 TPR repeat-containing 98.9 6E-06 1.3E-10 83.7 28.7 479 11-532 493-1020(1238)
95 KOG1070 rRNA processing protei 98.9 3.6E-06 7.8E-11 88.2 27.8 230 209-450 1454-1693(1710)
96 PRK04841 transcriptional regul 98.9 2.3E-05 5E-10 86.5 36.8 275 219-508 458-760 (903)
97 PRK04841 transcriptional regul 98.8 2.4E-05 5.1E-10 86.4 36.9 243 215-458 493-761 (903)
98 KOG3617 WD40 and TPR repeat-co 98.8 8.8E-05 1.9E-09 74.0 35.2 230 65-347 833-1105(1416)
99 KOG1127 TPR repeat-containing 98.8 4.1E-05 8.9E-10 77.9 33.6 423 73-559 473-950 (1238)
100 PF04733 Coatomer_E: Coatomer 98.8 1.2E-07 2.7E-12 87.0 15.2 82 337-421 182-264 (290)
101 KOG3616 Selective LIM binding 98.8 1.6E-05 3.6E-10 77.9 29.4 344 58-504 589-933 (1636)
102 KOG0624 dsRNA-activated protei 98.8 9.3E-05 2E-09 66.3 33.6 310 131-508 41-370 (504)
103 KOG1125 TPR repeat-containing 98.8 7E-07 1.5E-11 85.2 19.4 223 260-506 294-525 (579)
104 KOG0985 Vesicle coat protein c 98.8 9.1E-05 2E-09 75.5 34.7 365 57-507 983-1369(1666)
105 KOG1914 mRNA cleavage and poly 98.8 0.00016 3.5E-09 68.8 35.6 429 7-458 17-502 (656)
106 KOG3616 Selective LIM binding 98.8 5.8E-05 1.2E-09 74.3 31.1 109 329-451 739-847 (1636)
107 KOG1125 TPR repeat-containing 98.8 2.3E-06 4.9E-11 81.8 21.1 259 221-499 293-562 (579)
108 KOG1128 Uncharacterized conser 98.7 2.7E-06 5.9E-11 83.4 21.6 242 52-332 392-633 (777)
109 PLN02789 farnesyltranstransfer 98.7 1.9E-05 4.2E-10 73.7 26.7 216 11-298 38-267 (320)
110 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.3E-13 58.3 3.4 33 4-38 1-33 (34)
111 KOG3617 WD40 and TPR repeat-co 98.7 0.00041 8.9E-09 69.5 34.7 238 9-312 756-993 (1416)
112 KOG1070 rRNA processing protei 98.7 2.7E-05 5.8E-10 82.0 27.6 223 267-515 1441-1670(1710)
113 KOG0985 Vesicle coat protein c 98.6 0.0005 1.1E-08 70.4 34.6 197 217-447 1170-1373(1666)
114 PLN02789 farnesyltranstransfer 98.6 7.6E-05 1.6E-09 69.8 27.1 130 215-351 39-171 (320)
115 COG5010 TadD Flp pilus assembl 98.6 1.9E-05 4.1E-10 68.3 20.3 160 326-506 70-229 (257)
116 TIGR03302 OM_YfiO outer membra 98.6 1.7E-05 3.7E-10 71.8 21.6 188 248-457 30-232 (235)
117 TIGR03302 OM_YfiO outer membra 98.6 1.1E-05 2.4E-10 73.0 20.0 189 284-507 31-231 (235)
118 PRK10370 formate-dependent nit 98.6 1.8E-05 3.8E-10 68.7 19.9 124 370-515 52-179 (198)
119 PF12854 PPR_1: PPR repeat 98.5 8.1E-08 1.7E-12 55.7 3.3 32 53-84 2-33 (34)
120 PRK14720 transcript cleavage f 98.5 4.8E-05 1E-09 79.3 25.3 153 250-438 115-267 (906)
121 KOG3081 Vesicle coat complex C 98.5 0.00012 2.5E-09 63.5 22.0 150 293-455 115-269 (299)
122 KOG3081 Vesicle coat complex C 98.5 0.00012 2.6E-09 63.4 22.0 250 221-507 16-270 (299)
123 PRK14720 transcript cleavage f 98.5 0.00017 3.7E-09 75.4 27.4 170 210-422 28-198 (906)
124 PRK10370 formate-dependent nit 98.5 5.9E-05 1.3E-09 65.5 20.8 126 299-430 52-180 (198)
125 KOG1914 mRNA cleavage and poly 98.4 0.0018 3.8E-08 62.1 36.3 423 54-507 16-500 (656)
126 PRK15359 type III secretion sy 98.4 2.8E-05 6.1E-10 63.7 17.1 108 343-457 14-121 (144)
127 PRK15179 Vi polysaccharide bio 98.4 0.00018 3.8E-09 74.5 26.3 160 210-383 83-242 (694)
128 KOG3060 Uncharacterized conser 98.4 0.0003 6.5E-09 60.6 22.8 188 71-315 25-220 (289)
129 PRK15179 Vi polysaccharide bio 98.4 0.00015 3.2E-09 75.0 25.3 160 319-506 83-243 (694)
130 KOG3060 Uncharacterized conser 98.4 0.00092 2E-08 57.7 25.1 83 370-455 99-181 (289)
131 COG5010 TadD Flp pilus assembl 98.4 0.00016 3.4E-09 62.7 20.9 158 290-453 70-227 (257)
132 PRK15359 type III secretion sy 98.3 5E-05 1.1E-09 62.2 16.3 98 213-315 24-121 (144)
133 COG4783 Putative Zn-dependent 98.3 0.0024 5.2E-08 60.7 27.2 118 368-506 317-435 (484)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.7E-05 8.1E-10 73.2 15.8 124 359-506 171-295 (395)
135 TIGR02552 LcrH_SycD type III s 98.3 6.4E-05 1.4E-09 61.3 15.3 98 357-457 17-114 (135)
136 COG4783 Putative Zn-dependent 98.3 0.001 2.2E-08 63.1 24.2 140 294-457 314-454 (484)
137 TIGR02552 LcrH_SycD type III s 98.2 6.9E-05 1.5E-09 61.1 14.1 118 379-518 5-122 (135)
138 PF09976 TPR_21: Tetratricopep 98.2 9.5E-05 2.1E-09 60.9 14.6 126 359-505 14-144 (145)
139 KOG2053 Mitochondrial inherita 98.1 0.016 3.5E-07 59.3 44.9 214 28-315 25-255 (932)
140 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.5E-10 47.5 4.6 33 395-427 2-34 (35)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00026 5.7E-09 67.5 15.8 126 287-420 170-295 (395)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00055 1.2E-08 56.3 15.3 20 433-452 123-142 (145)
143 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.4E-10 47.6 3.6 33 60-92 2-34 (35)
144 PF13812 PPR_3: Pentatricopept 97.9 1.2E-05 2.6E-10 47.1 3.5 32 60-91 3-34 (34)
145 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.9E-10 45.8 4.6 33 394-426 2-34 (34)
146 KOG2053 Mitochondrial inherita 97.9 0.037 8E-07 56.8 41.4 200 13-242 44-255 (932)
147 PF07079 DUF1347: Protein of u 97.9 0.023 5E-07 53.6 41.0 126 370-520 392-531 (549)
148 KOG0553 TPR repeat-containing 97.9 0.00016 3.5E-09 64.0 10.8 94 405-519 93-187 (304)
149 PF10037 MRP-S27: Mitochondria 97.8 0.00033 7.1E-09 67.2 13.0 124 246-370 61-186 (429)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0011 2.3E-08 52.5 14.2 99 394-508 3-105 (119)
151 COG3898 Uncharacterized membra 97.8 0.029 6.4E-07 51.8 27.5 310 210-554 115-436 (531)
152 PF12895 Apc3: Anaphase-promot 97.8 8.6E-05 1.9E-09 54.4 6.7 80 406-504 2-83 (84)
153 PF08579 RPM2: Mitochondrial r 97.8 0.00038 8.3E-09 51.9 9.6 81 60-140 27-116 (120)
154 cd00189 TPR Tetratricopeptide 97.8 0.00086 1.9E-08 50.3 12.3 94 396-507 3-96 (100)
155 COG4700 Uncharacterized protei 97.7 0.017 3.8E-07 47.5 20.8 144 353-518 85-231 (251)
156 KOG0550 Molecular chaperone (D 97.7 0.036 7.7E-07 51.7 23.4 278 18-315 57-350 (486)
157 CHL00033 ycf3 photosystem I as 97.7 0.0017 3.7E-08 55.1 14.6 114 374-505 16-139 (168)
158 PF10037 MRP-S27: Mitochondria 97.7 0.00077 1.7E-08 64.7 13.5 123 318-441 62-186 (429)
159 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.4E-08 61.3 13.9 146 287-436 2-148 (280)
160 COG4700 Uncharacterized protei 97.7 0.0078 1.7E-07 49.4 16.6 136 319-456 86-221 (251)
161 cd00189 TPR Tetratricopeptide 97.7 0.00099 2.2E-08 49.9 11.5 91 362-455 5-95 (100)
162 PLN03088 SGT1, suppressor of 97.7 0.0015 3.3E-08 62.7 15.0 99 401-520 10-109 (356)
163 PRK15363 pathogenicity island 97.7 0.0032 7E-08 50.9 14.2 101 212-317 34-134 (157)
164 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0019 4.1E-08 51.1 12.9 98 360-457 5-105 (119)
165 KOG0550 Molecular chaperone (D 97.6 0.0089 1.9E-07 55.6 18.2 264 216-508 52-350 (486)
166 CHL00033 ycf3 photosystem I as 97.6 0.0015 3.2E-08 55.4 12.9 96 322-419 35-139 (168)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00014 3.1E-09 53.3 5.6 81 71-153 2-83 (84)
168 PLN03088 SGT1, suppressor of 97.6 0.0023 5E-08 61.4 15.4 89 366-457 11-99 (356)
169 PRK02603 photosystem I assembl 97.6 0.004 8.7E-08 53.0 15.3 65 393-457 35-101 (172)
170 PRK02603 photosystem I assembl 97.6 0.0045 9.8E-08 52.7 15.6 85 288-373 37-122 (172)
171 PF01535 PPR: PPR repeat; Int 97.6 0.00011 2.3E-09 41.8 3.6 30 395-424 2-31 (31)
172 PRK15363 pathogenicity island 97.6 0.006 1.3E-07 49.4 14.4 96 360-458 38-133 (157)
173 PF01535 PPR: PPR repeat; Int 97.5 7.1E-05 1.5E-09 42.6 2.5 29 60-88 2-30 (31)
174 PF05843 Suf: Suppressor of fo 97.5 0.0027 5.9E-08 58.7 14.0 131 323-457 2-136 (280)
175 PRK10153 DNA-binding transcrip 97.5 0.0078 1.7E-07 60.5 18.0 143 353-517 333-489 (517)
176 PF14938 SNAP: Soluble NSF att 97.5 0.03 6.6E-07 52.0 20.2 29 58-86 35-63 (282)
177 PF14938 SNAP: Soluble NSF att 97.5 0.012 2.6E-07 54.6 17.5 178 10-242 35-225 (282)
178 KOG2041 WD40 repeat protein [G 97.5 0.15 3.3E-06 51.0 28.3 207 55-347 689-903 (1189)
179 PF08579 RPM2: Mitochondrial r 97.4 0.0042 9.2E-08 46.5 11.2 30 340-369 87-116 (120)
180 KOG2280 Vacuolar assembly/sort 97.4 0.088 1.9E-06 53.1 23.5 334 121-505 425-796 (829)
181 PRK10153 DNA-binding transcrip 97.4 0.01 2.3E-07 59.6 17.4 136 318-457 333-482 (517)
182 PF12688 TPR_5: Tetratrico pep 97.4 0.0049 1.1E-07 48.0 11.8 90 399-506 7-102 (120)
183 PF14559 TPR_19: Tetratricopep 97.4 0.00061 1.3E-08 47.5 6.2 62 439-520 2-64 (68)
184 PF12688 TPR_5: Tetratrico pep 97.3 0.016 3.6E-07 45.1 14.1 93 329-421 8-103 (120)
185 PF13414 TPR_11: TPR repeat; P 97.3 0.0022 4.7E-08 44.8 8.6 63 427-507 2-66 (69)
186 PRK10866 outer membrane biogen 97.3 0.081 1.8E-06 47.7 20.6 60 433-506 180-239 (243)
187 KOG0553 TPR repeat-containing 97.3 0.0044 9.5E-08 55.2 11.8 102 331-437 90-191 (304)
188 PF07079 DUF1347: Protein of u 97.3 0.17 3.6E-06 48.1 37.6 62 479-560 460-523 (549)
189 PF13432 TPR_16: Tetratricopep 97.3 0.0013 2.9E-08 45.2 6.7 60 434-513 3-63 (65)
190 PF06239 ECSIT: Evolutionarily 97.3 0.0053 1.1E-07 52.2 11.1 91 54-144 43-154 (228)
191 PF13432 TPR_16: Tetratricopep 97.2 0.0022 4.8E-08 44.1 7.4 57 400-457 4-60 (65)
192 COG4235 Cytochrome c biogenesi 97.2 0.021 4.6E-07 51.3 15.0 101 389-508 152-256 (287)
193 COG3898 Uncharacterized membra 97.2 0.2 4.3E-06 46.7 29.2 297 13-385 85-391 (531)
194 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.2E-08 45.5 6.3 52 405-457 3-54 (68)
195 KOG1538 Uncharacterized conser 97.2 0.044 9.6E-07 54.0 17.8 27 54-80 552-578 (1081)
196 KOG2280 Vacuolar assembly/sort 97.1 0.38 8.2E-06 48.8 26.3 64 93-156 507-574 (829)
197 PF13414 TPR_11: TPR repeat; P 97.1 0.0034 7.3E-08 43.8 7.7 65 392-457 2-67 (69)
198 PF13525 YfiO: Outer membrane 97.1 0.13 2.9E-06 44.9 19.3 84 398-499 115-198 (203)
199 PF04840 Vps16_C: Vps16, C-ter 97.1 0.26 5.7E-06 46.2 23.4 112 357-505 177-288 (319)
200 KOG1130 Predicted G-alpha GTPa 97.1 0.011 2.4E-07 54.8 12.2 276 221-507 25-343 (639)
201 PRK10803 tol-pal system protei 97.0 0.015 3.3E-07 52.7 12.6 104 394-515 144-251 (263)
202 PF03704 BTAD: Bacterial trans 97.0 0.048 1E-06 44.9 14.7 72 430-518 64-140 (146)
203 PF06239 ECSIT: Evolutionarily 97.0 0.02 4.4E-07 48.8 12.0 72 265-337 66-153 (228)
204 COG4235 Cytochrome c biogenesi 96.9 0.057 1.2E-06 48.6 15.3 101 354-457 153-256 (287)
205 PRK10866 outer membrane biogen 96.9 0.29 6.4E-06 44.1 23.7 64 213-280 32-98 (243)
206 KOG1130 Predicted G-alpha GTPa 96.9 0.041 8.9E-07 51.3 14.2 134 324-457 197-344 (639)
207 PF13525 YfiO: Outer membrane 96.9 0.26 5.6E-06 43.2 19.2 67 213-280 5-71 (203)
208 PF12921 ATP13: Mitochondrial 96.9 0.018 4E-07 45.3 10.6 91 427-520 1-94 (126)
209 PF03704 BTAD: Bacterial trans 96.9 0.086 1.9E-06 43.4 15.2 71 288-360 64-139 (146)
210 PRK10803 tol-pal system protei 96.7 0.051 1.1E-06 49.4 13.7 96 360-457 146-246 (263)
211 KOG2041 WD40 repeat protein [G 96.7 0.84 1.8E-05 46.0 30.4 76 70-154 746-822 (1189)
212 PF13424 TPR_12: Tetratricopep 96.7 0.014 2.9E-07 41.9 7.9 68 429-507 6-74 (78)
213 PF13371 TPR_9: Tetratricopept 96.6 0.02 4.4E-07 40.3 8.2 66 435-520 2-68 (73)
214 PF13371 TPR_9: Tetratricopept 96.5 0.023 5.1E-07 40.0 8.0 56 401-457 3-58 (73)
215 KOG0543 FKBP-type peptidyl-pro 96.5 0.19 4.1E-06 47.3 15.5 115 428-570 257-371 (397)
216 PF12921 ATP13: Mitochondrial 96.5 0.063 1.4E-06 42.3 10.8 52 281-332 47-98 (126)
217 PF04840 Vps16_C: Vps16, C-ter 96.4 0.87 1.9E-05 42.8 29.5 105 290-416 181-285 (319)
218 PF13424 TPR_12: Tetratricopep 96.4 0.012 2.7E-07 42.1 6.2 69 10-86 5-74 (78)
219 PRK11906 transcriptional regul 96.3 0.32 7E-06 47.0 16.3 77 410-505 321-398 (458)
220 PF13281 DUF4071: Domain of un 96.2 1.2 2.6E-05 42.4 21.5 164 291-457 146-334 (374)
221 PRK15331 chaperone protein Sic 96.2 0.11 2.4E-06 42.5 11.0 87 403-507 47-133 (165)
222 KOG2796 Uncharacterized conser 96.2 0.81 1.7E-05 40.4 23.1 141 360-520 180-325 (366)
223 PF10300 DUF3808: Protein of u 96.1 0.3 6.6E-06 48.9 16.4 145 360-520 191-345 (468)
224 KOG0543 FKBP-type peptidyl-pro 96.1 0.27 5.7E-06 46.3 14.6 96 393-507 257-354 (397)
225 PF13281 DUF4071: Domain of un 96.1 1.3 2.9E-05 42.1 21.9 195 230-429 120-339 (374)
226 PRK15331 chaperone protein Sic 96.0 0.33 7.1E-06 39.8 12.8 96 60-157 39-134 (165)
227 PF10300 DUF3808: Protein of u 96.0 0.6 1.3E-05 46.8 17.6 165 290-457 192-376 (468)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.17 3.6E-06 48.8 12.5 66 390-457 72-141 (453)
229 KOG1941 Acetylcholine receptor 95.8 0.32 7E-06 44.8 13.3 162 359-530 85-257 (518)
230 KOG2796 Uncharacterized conser 95.8 1.3 2.8E-05 39.2 25.1 133 323-457 178-315 (366)
231 KOG4555 TPR repeat-containing 95.8 0.6 1.3E-05 36.3 12.5 93 401-509 51-145 (175)
232 COG3118 Thioredoxin domain-con 95.7 1.5 3.3E-05 39.7 18.2 123 211-338 166-288 (304)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.23 5.1E-06 47.8 12.6 64 9-87 74-141 (453)
234 COG4105 ComL DNA uptake lipopr 95.5 1.6 3.5E-05 38.7 18.0 73 484-574 172-251 (254)
235 PF04053 Coatomer_WDAD: Coatom 95.5 1 2.2E-05 44.6 16.6 156 262-454 272-428 (443)
236 KOG1258 mRNA processing protei 95.5 3.1 6.8E-05 41.5 35.1 413 9-493 44-489 (577)
237 PF08631 SPO22: Meiosis protei 95.4 2.2 4.8E-05 39.5 26.0 80 69-149 4-105 (278)
238 KOG1538 Uncharacterized conser 95.4 1.8 4E-05 43.3 17.5 90 249-350 745-845 (1081)
239 KOG2610 Uncharacterized conser 95.4 2.2 4.7E-05 39.2 19.1 115 335-453 116-234 (491)
240 KOG1585 Protein required for f 95.3 1.6 3.5E-05 38.1 15.1 57 216-273 193-249 (308)
241 COG3118 Thioredoxin domain-con 95.3 1.2 2.6E-05 40.3 14.8 53 332-385 144-196 (304)
242 PF04053 Coatomer_WDAD: Coatom 95.3 1.7 3.7E-05 43.0 17.5 84 211-312 345-428 (443)
243 KOG2610 Uncharacterized conser 95.3 2.3 5E-05 39.1 16.5 152 177-348 115-273 (491)
244 PF08631 SPO22: Meiosis protei 95.2 2.6 5.6E-05 39.1 23.1 18 438-455 256-273 (278)
245 KOG1464 COP9 signalosome, subu 95.1 2.2 4.8E-05 37.9 21.8 276 225-527 39-349 (440)
246 COG5107 RNA14 Pre-mRNA 3'-end 95.0 3.5 7.5E-05 39.6 32.7 137 357-515 397-536 (660)
247 KOG3941 Intermediate in Toll s 95.0 0.17 3.8E-06 44.8 8.6 101 55-155 64-186 (406)
248 smart00299 CLH Clathrin heavy 94.9 1.7 3.6E-05 35.3 14.5 86 62-155 11-96 (140)
249 PF09205 DUF1955: Domain of un 94.8 1.5 3.3E-05 34.2 14.6 137 335-510 15-151 (161)
250 COG1729 Uncharacterized protei 94.5 1 2.2E-05 40.3 12.3 106 58-164 142-251 (262)
251 KOG2114 Vacuolar assembly/sort 94.5 3.2 6.9E-05 43.2 17.0 110 333-453 379-488 (933)
252 KOG1941 Acetylcholine receptor 94.4 4.4 9.6E-05 37.8 21.2 232 225-457 18-275 (518)
253 PF04184 ST7: ST7 protein; In 94.3 5.5 0.00012 39.0 17.4 64 358-421 260-323 (539)
254 KOG1585 Protein required for f 94.3 3.4 7.4E-05 36.2 18.1 177 289-505 34-216 (308)
255 COG1729 Uncharacterized protei 94.2 0.93 2E-05 40.5 11.4 87 335-422 154-244 (262)
256 KOG3941 Intermediate in Toll s 94.2 0.53 1.1E-05 41.9 9.6 99 392-506 66-186 (406)
257 KOG1920 IkappaB kinase complex 94.1 11 0.00024 41.2 22.5 79 400-505 972-1052(1265)
258 COG4649 Uncharacterized protei 94.0 3 6.4E-05 34.5 14.8 132 358-507 60-195 (221)
259 KOG4555 TPR repeat-containing 93.8 1.7 3.7E-05 33.8 10.6 91 19-123 52-145 (175)
260 PRK15180 Vi polysaccharide bio 93.8 0.86 1.9E-05 43.8 11.0 142 402-581 298-442 (831)
261 PF13512 TPR_18: Tetratricopep 93.8 1.8 4E-05 34.7 11.3 65 59-123 11-77 (142)
262 PF00637 Clathrin: Region in C 93.5 0.05 1.1E-06 44.6 2.2 130 63-229 12-141 (143)
263 PF13428 TPR_14: Tetratricopep 93.5 0.2 4.3E-06 30.9 4.5 29 429-457 2-30 (44)
264 smart00299 CLH Clathrin heavy 93.4 3.6 7.8E-05 33.3 16.2 43 256-299 12-54 (140)
265 PF13428 TPR_14: Tetratricopep 93.3 0.28 6E-06 30.3 4.9 27 96-122 4-30 (44)
266 COG0457 NrfG FOG: TPR repeat [ 93.1 5.9 0.00013 35.1 30.5 222 265-507 37-264 (291)
267 KOG2114 Vacuolar assembly/sort 92.9 14 0.0003 38.8 27.1 121 12-155 336-458 (933)
268 PF09205 DUF1955: Domain of un 92.9 3.8 8.1E-05 32.2 15.2 139 263-425 14-152 (161)
269 PF10602 RPN7: 26S proteasome 92.7 2.9 6.3E-05 35.5 11.8 107 429-564 37-145 (177)
270 COG3629 DnrI DNA-binding trans 92.7 1.7 3.6E-05 39.6 10.7 78 358-437 154-236 (280)
271 COG4105 ComL DNA uptake lipopr 92.6 7.2 0.00016 34.8 21.8 61 219-280 40-100 (254)
272 COG3629 DnrI DNA-binding trans 92.4 1.3 2.9E-05 40.2 9.7 82 58-140 153-239 (280)
273 PRK11906 transcriptional regul 92.2 12 0.00027 36.5 17.8 145 302-453 274-432 (458)
274 PF13512 TPR_18: Tetratricopep 92.1 4 8.7E-05 32.8 10.9 87 8-106 9-95 (142)
275 COG5107 RNA14 Pre-mRNA 3'-end 91.9 13 0.00027 36.1 36.8 131 323-457 398-531 (660)
276 KOG1258 mRNA processing protei 91.8 16 0.00034 36.8 28.7 98 357-457 297-395 (577)
277 KOG1586 Protein required for f 91.7 8.7 0.00019 33.6 16.8 19 439-457 165-183 (288)
278 COG2976 Uncharacterized protei 91.7 7.6 0.00016 33.0 14.6 91 398-509 94-189 (207)
279 KOG1920 IkappaB kinase complex 91.7 24 0.00053 38.8 30.0 116 319-455 932-1053(1265)
280 PF10602 RPN7: 26S proteasome 91.6 3.9 8.3E-05 34.8 11.2 98 213-313 36-140 (177)
281 KOG4234 TPR repeat-containing 91.5 8 0.00017 32.9 14.1 96 402-518 104-205 (271)
282 PF13176 TPR_7: Tetratricopept 91.4 0.57 1.2E-05 27.3 4.3 23 431-453 2-24 (36)
283 PF10345 Cohesin_load: Cohesin 91.4 21 0.00046 37.5 32.3 132 15-156 105-253 (608)
284 COG4649 Uncharacterized protei 91.3 7.5 0.00016 32.3 14.4 63 251-314 59-122 (221)
285 KOG4570 Uncharacterized conser 91.2 2.8 6.1E-05 38.2 10.1 114 51-166 57-173 (418)
286 PF07035 Mic1: Colon cancer-as 91.1 8 0.00017 32.2 15.7 135 78-279 14-148 (167)
287 PF13176 TPR_7: Tetratricopept 91.0 0.59 1.3E-05 27.2 4.1 26 395-420 1-26 (36)
288 PF13170 DUF4003: Protein of u 90.9 14 0.00029 34.5 20.5 131 339-487 79-225 (297)
289 COG4785 NlpI Lipoprotein NlpI, 90.8 10 0.00022 32.8 14.0 29 252-280 238-266 (297)
290 PF00515 TPR_1: Tetratricopept 90.5 1.1 2.5E-05 25.4 5.0 29 429-457 2-30 (34)
291 COG0457 NrfG FOG: TPR repeat [ 90.0 13 0.00028 32.8 31.8 222 226-457 36-265 (291)
292 PF13431 TPR_17: Tetratricopep 89.7 0.56 1.2E-05 26.9 3.1 25 54-78 9-33 (34)
293 PF13431 TPR_17: Tetratricopep 89.2 0.52 1.1E-05 27.1 2.8 32 116-148 2-33 (34)
294 KOG2396 HAT (Half-A-TPR) repea 89.1 24 0.00053 34.8 30.7 76 92-168 104-180 (568)
295 PF07719 TPR_2: Tetratricopept 89.1 1.5 3.3E-05 24.8 4.9 29 429-457 2-30 (34)
296 KOG4570 Uncharacterized conser 89.1 3.4 7.4E-05 37.7 8.9 98 321-421 63-163 (418)
297 PF02284 COX5A: Cytochrome c o 88.9 7.1 0.00015 29.1 8.9 49 340-388 28-76 (108)
298 COG3947 Response regulator con 88.7 19 0.0004 32.8 15.3 58 216-277 282-339 (361)
299 PF00515 TPR_1: Tetratricopept 88.2 1.5 3.3E-05 24.9 4.4 29 394-422 2-30 (34)
300 KOG1550 Extracellular protein 87.9 33 0.00071 35.5 16.6 45 267-314 228-277 (552)
301 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 6.4 0.00014 28.9 8.0 50 408-457 22-71 (103)
302 PF08424 NRDE-2: NRDE-2, neces 87.8 26 0.00055 33.3 21.8 173 373-576 47-231 (321)
303 PF07719 TPR_2: Tetratricopept 87.5 1.6 3.5E-05 24.6 4.3 28 480-507 2-29 (34)
304 PF06552 TOM20_plant: Plant sp 87.3 15 0.00034 30.8 11.0 104 409-527 7-125 (186)
305 PF02284 COX5A: Cytochrome c o 86.8 11 0.00024 28.1 9.4 60 76-136 28-87 (108)
306 KOG4648 Uncharacterized conser 86.4 6.2 0.00014 36.5 9.0 53 366-420 106-158 (536)
307 PF11207 DUF2989: Protein of u 86.3 8 0.00017 33.2 9.1 75 410-498 123-197 (203)
308 PF02259 FAT: FAT domain; Int 86.1 33 0.00072 33.0 22.6 66 356-421 145-212 (352)
309 KOG0276 Vesicle coat complex C 86.1 13 0.00028 37.4 11.6 132 215-383 616-747 (794)
310 PF09613 HrpB1_HrpK: Bacterial 85.9 18 0.00039 29.8 13.6 19 403-421 54-72 (160)
311 PF10345 Cohesin_load: Cohesin 85.9 50 0.0011 34.8 42.3 430 57-507 58-605 (608)
312 PF13170 DUF4003: Protein of u 85.7 31 0.00067 32.2 20.5 49 267-315 78-132 (297)
313 KOG2066 Vacuolar assembly/sort 85.5 52 0.0011 34.6 25.2 101 18-140 364-467 (846)
314 PF07035 Mic1: Colon cancer-as 85.3 21 0.00045 29.9 14.4 32 345-376 17-48 (167)
315 PF13929 mRNA_stabil: mRNA sta 85.1 31 0.00066 31.6 18.2 139 299-437 141-287 (292)
316 KOG0376 Serine-threonine phosp 85.1 5.9 0.00013 38.6 8.7 100 401-522 12-113 (476)
317 PRK09687 putative lyase; Provi 84.9 33 0.0007 31.8 28.3 235 55-368 34-278 (280)
318 KOG0991 Replication factor C, 84.8 27 0.00058 30.8 13.7 136 292-438 136-282 (333)
319 KOG4234 TPR repeat-containing 84.7 17 0.00037 31.1 10.0 86 368-457 106-197 (271)
320 PF13374 TPR_10: Tetratricopep 84.5 2.7 5.9E-05 25.1 4.4 31 428-458 2-32 (42)
321 PF10579 Rapsyn_N: Rapsyn N-te 84.1 4.5 9.7E-05 28.5 5.5 49 440-503 18-67 (80)
322 PF06552 TOM20_plant: Plant sp 84.0 14 0.0003 31.0 9.3 78 409-512 51-140 (186)
323 PF13374 TPR_10: Tetratricopep 83.6 3.5 7.5E-05 24.6 4.6 29 393-421 2-30 (42)
324 PF04097 Nic96: Nup93/Nic96; 83.4 64 0.0014 34.0 22.9 88 292-385 264-355 (613)
325 PF04184 ST7: ST7 protein; In 83.3 51 0.0011 32.8 22.4 79 213-293 259-338 (539)
326 PF09613 HrpB1_HrpK: Bacterial 83.2 24 0.00053 29.1 13.7 17 225-241 22-38 (160)
327 PF11207 DUF2989: Protein of u 82.4 31 0.00068 29.7 12.4 79 261-341 117-197 (203)
328 KOG1550 Extracellular protein 81.7 70 0.0015 33.2 17.6 179 229-424 228-428 (552)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 81.2 20 0.00042 26.6 9.3 50 337-386 22-71 (103)
330 PF13174 TPR_6: Tetratricopept 81.2 3.9 8.5E-05 22.7 4.0 26 432-457 4-29 (33)
331 PF09670 Cas_Cas02710: CRISPR- 81.1 34 0.00073 33.4 12.5 56 401-457 139-198 (379)
332 TIGR03504 FimV_Cterm FimV C-te 80.2 3.5 7.6E-05 25.4 3.5 26 484-509 4-29 (44)
333 KOG0276 Vesicle coat complex C 80.2 31 0.00066 35.0 11.5 132 288-454 616-747 (794)
334 PF07575 Nucleopor_Nup85: Nup8 80.0 58 0.0013 34.0 14.6 24 491-514 507-530 (566)
335 PRK09687 putative lyase; Provi 79.9 51 0.0011 30.5 31.2 235 210-490 34-278 (280)
336 PF13181 TPR_8: Tetratricopept 79.6 5.8 0.00013 22.3 4.3 28 480-507 2-29 (34)
337 PF13929 mRNA_stabil: mRNA sta 79.3 52 0.0011 30.2 13.8 59 283-341 199-257 (292)
338 PF13174 TPR_6: Tetratricopept 79.2 5.9 0.00013 22.0 4.3 26 482-507 3-28 (33)
339 PF13181 TPR_8: Tetratricopept 78.9 7.1 0.00015 21.9 4.6 26 396-421 4-29 (34)
340 PF00637 Clathrin: Region in C 78.8 2.4 5.2E-05 34.5 3.4 85 15-119 12-96 (143)
341 COG1747 Uncharacterized N-term 78.5 76 0.0016 31.7 25.6 165 283-457 63-234 (711)
342 COG3947 Response regulator con 78.4 54 0.0012 30.0 17.9 63 395-458 281-343 (361)
343 PF13762 MNE1: Mitochondrial s 78.4 22 0.00049 28.8 8.5 50 92-141 78-128 (145)
344 KOG1464 COP9 signalosome, subu 78.3 51 0.0011 29.7 18.8 164 328-507 71-260 (440)
345 KOG0991 Replication factor C, 78.2 48 0.001 29.3 13.1 89 215-314 132-220 (333)
346 KOG2396 HAT (Half-A-TPR) repea 78.1 77 0.0017 31.6 35.2 68 54-122 101-169 (568)
347 PF07721 TPR_4: Tetratricopept 77.1 4.1 8.9E-05 21.5 2.9 23 481-503 3-25 (26)
348 PF07163 Pex26: Pex26 protein; 76.6 35 0.00076 31.0 9.8 97 435-560 90-186 (309)
349 PF07163 Pex26: Pex26 protein; 76.3 45 0.00098 30.3 10.4 89 218-309 88-181 (309)
350 COG4455 ImpE Protein of avirul 75.5 26 0.00057 30.5 8.5 46 261-307 11-56 (273)
351 TIGR03504 FimV_Cterm FimV C-te 75.5 7.6 0.00017 23.9 4.0 24 399-422 5-28 (44)
352 KOG2471 TPR repeat-containing 75.5 89 0.0019 31.0 17.0 39 106-144 30-68 (696)
353 PF14853 Fis1_TPR_C: Fis1 C-te 74.3 14 0.00029 23.9 5.1 37 482-520 4-40 (53)
354 PF13762 MNE1: Mitochondrial s 74.3 35 0.00076 27.7 8.6 30 127-156 78-108 (145)
355 PF14689 SPOB_a: Sensor_kinase 73.9 14 0.0003 24.8 5.4 32 476-507 20-51 (62)
356 COG4785 NlpI Lipoprotein NlpI, 73.4 62 0.0014 28.2 17.1 160 251-422 99-266 (297)
357 COG4455 ImpE Protein of avirul 73.1 25 0.00055 30.6 7.8 52 365-418 9-60 (273)
358 KOG4648 Uncharacterized conser 72.5 25 0.00054 32.8 8.2 90 220-314 104-193 (536)
359 TIGR02561 HrpB1_HrpK type III 72.3 52 0.0011 26.8 11.0 19 403-421 54-72 (153)
360 PF02259 FAT: FAT domain; Int 72.2 95 0.0021 29.8 23.2 69 211-279 144-212 (352)
361 KOG1498 26S proteasome regulat 71.7 98 0.0021 29.8 18.5 159 398-571 136-313 (439)
362 COG1747 Uncharacterized N-term 71.5 1.2E+02 0.0025 30.5 25.4 180 210-403 63-249 (711)
363 KOG4077 Cytochrome c oxidase, 71.5 34 0.00074 26.8 7.4 47 411-457 67-113 (149)
364 TIGR02561 HrpB1_HrpK type III 70.8 56 0.0012 26.6 12.5 17 225-241 22-38 (153)
365 KOG2066 Vacuolar assembly/sort 70.8 1.5E+02 0.0032 31.5 25.5 24 289-312 508-531 (846)
366 PF10579 Rapsyn_N: Rapsyn N-te 70.4 14 0.0003 26.1 4.8 21 430-450 45-65 (80)
367 KOG2063 Vacuolar assembly/sort 69.7 1.8E+02 0.0038 31.9 22.2 102 402-506 600-711 (877)
368 KOG4521 Nuclear pore complex, 68.9 2E+02 0.0043 32.2 16.7 124 359-505 985-1128(1480)
369 PF09986 DUF2225: Uncharacteri 67.4 39 0.00085 29.8 8.3 100 438-566 87-199 (214)
370 COG2909 MalT ATP-dependent tra 67.0 1.9E+02 0.0041 31.3 25.7 199 296-513 425-652 (894)
371 KOG4077 Cytochrome c oxidase, 66.9 44 0.00095 26.2 7.1 46 77-122 68-113 (149)
372 PF09986 DUF2225: Uncharacteri 66.7 91 0.002 27.5 13.2 103 405-513 89-199 (214)
373 KOG4642 Chaperone-dependent E3 66.0 98 0.0021 27.6 10.3 122 367-505 20-143 (284)
374 PRK10941 hypothetical protein; 64.0 1.2E+02 0.0026 27.9 11.2 62 396-458 184-245 (269)
375 smart00028 TPR Tetratricopepti 62.7 21 0.00046 18.7 4.4 27 481-507 3-29 (34)
376 KOG0687 26S proteasome regulat 62.5 1.4E+02 0.003 28.0 13.9 111 430-568 106-217 (393)
377 KOG3364 Membrane protein invol 61.5 83 0.0018 25.2 10.3 74 425-517 29-107 (149)
378 PF12862 Apc5: Anaphase-promot 59.5 56 0.0012 24.1 6.8 55 224-278 9-68 (94)
379 COG5187 RPN7 26S proteasome re 59.2 1.5E+02 0.0032 27.3 12.4 28 429-456 116-143 (412)
380 KOG1308 Hsp70-interacting prot 58.7 12 0.00026 34.8 3.6 93 406-517 127-220 (377)
381 PRK11619 lytic murein transgly 58.5 2.5E+02 0.0055 29.8 35.6 170 267-454 295-465 (644)
382 PF07575 Nucleopor_Nup85: Nup8 58.0 2.4E+02 0.0053 29.5 18.4 26 9-37 148-173 (566)
383 COG2976 Uncharacterized protei 57.7 1.2E+02 0.0027 26.0 18.1 112 340-457 70-188 (207)
384 PF04910 Tcf25: Transcriptiona 57.6 1.9E+02 0.0041 28.1 17.3 149 10-162 40-227 (360)
385 PF11846 DUF3366: Domain of un 57.1 46 0.001 28.7 7.0 32 390-421 141-172 (193)
386 PF11838 ERAP1_C: ERAP1-like C 55.9 1.8E+02 0.004 27.4 17.8 91 212-310 168-261 (324)
387 KOG1114 Tripeptidyl peptidase 55.9 3.1E+02 0.0068 30.1 17.1 50 287-336 1232-1281(1304)
388 PF10366 Vps39_1: Vacuolar sor 55.5 84 0.0018 24.1 7.2 26 325-350 42-67 (108)
389 KOG0686 COP9 signalosome, subu 55.3 2.1E+02 0.0045 27.9 12.7 63 59-121 151-215 (466)
390 KOG4507 Uncharacterized conser 55.1 65 0.0014 32.7 7.9 88 69-157 618-705 (886)
391 PF14689 SPOB_a: Sensor_kinase 55.0 37 0.00079 22.8 4.6 24 397-420 27-50 (62)
392 TIGR02508 type_III_yscG type I 54.9 89 0.0019 23.5 8.3 83 338-431 21-105 (115)
393 PF14853 Fis1_TPR_C: Fis1 C-te 54.3 57 0.0012 21.1 6.0 25 433-457 6-30 (53)
394 COG5159 RPN6 26S proteasome re 54.0 1.8E+02 0.0039 26.7 9.9 132 219-350 9-153 (421)
395 PF11817 Foie-gras_1: Foie gra 53.9 84 0.0018 28.5 8.3 63 432-505 182-244 (247)
396 PF11848 DUF3368: Domain of un 53.9 53 0.0012 20.6 5.3 36 401-436 10-45 (48)
397 PF11846 DUF3366: Domain of un 52.6 75 0.0016 27.4 7.6 32 319-350 141-172 (193)
398 COG5108 RPO41 Mitochondrial DN 52.1 85 0.0018 32.4 8.3 75 63-140 33-115 (1117)
399 KOG4507 Uncharacterized conser 51.9 49 0.0011 33.5 6.6 59 218-280 647-705 (886)
400 COG5108 RPO41 Mitochondrial DN 51.7 1.1E+02 0.0024 31.6 9.0 77 218-298 33-115 (1117)
401 PF04762 IKI3: IKI3 family; I 51.6 3.9E+02 0.0085 30.0 16.5 215 217-454 698-927 (928)
402 KOG1586 Protein required for f 50.0 1.9E+02 0.0041 25.8 16.4 28 257-284 160-187 (288)
403 PRK10564 maltose regulon perip 49.9 43 0.00093 30.9 5.6 44 391-434 254-298 (303)
404 PRK10941 hypothetical protein; 49.8 2.1E+02 0.0046 26.3 11.1 72 255-327 185-256 (269)
405 cd00280 TRFH Telomeric Repeat 49.0 1.3E+02 0.0029 25.5 7.7 67 409-494 85-158 (200)
406 PRK10564 maltose regulon perip 48.6 50 0.0011 30.5 5.8 46 474-519 251-297 (303)
407 PF11848 DUF3368: Domain of un 48.4 67 0.0015 20.2 4.9 31 70-100 14-44 (48)
408 COG0735 Fur Fe2+/Zn2+ uptake r 47.4 1.4E+02 0.003 24.4 7.8 65 79-144 7-71 (145)
409 PRK13184 pknD serine/threonine 47.4 4.5E+02 0.0097 29.4 23.9 211 227-453 670-896 (932)
410 KOG3364 Membrane protein invol 47.1 1.5E+02 0.0032 23.8 9.6 69 354-422 29-100 (149)
411 TIGR02508 type_III_yscG type I 46.9 1.2E+02 0.0027 22.8 8.6 78 267-352 21-98 (115)
412 PF15297 CKAP2_C: Cytoskeleton 46.8 2.1E+02 0.0046 27.2 9.5 65 444-527 119-187 (353)
413 KOG1498 26S proteasome regulat 46.8 2.8E+02 0.0061 26.9 17.3 23 217-239 135-157 (439)
414 KOG4567 GTPase-activating prot 46.3 1.4E+02 0.0031 27.7 8.1 44 342-385 263-306 (370)
415 KOG2659 LisH motif-containing 45.8 2.2E+02 0.0047 25.3 9.5 20 400-419 71-90 (228)
416 KOG4642 Chaperone-dependent E3 45.5 2.3E+02 0.0049 25.5 11.0 102 331-437 19-126 (284)
417 cd08819 CARD_MDA5_2 Caspase ac 45.5 1.2E+02 0.0025 22.1 6.5 66 77-148 21-86 (88)
418 KOG0890 Protein kinase of the 45.0 7E+02 0.015 30.9 25.8 324 98-511 1388-1734(2382)
419 PF08424 NRDE-2: NRDE-2, neces 45.0 2.8E+02 0.0061 26.4 19.1 101 54-156 15-130 (321)
420 PF12862 Apc5: Anaphase-promot 44.6 1.3E+02 0.0027 22.2 10.1 56 403-458 8-71 (94)
421 PF14669 Asp_Glu_race_2: Putat 43.9 2.1E+02 0.0046 24.6 14.9 55 256-310 137-205 (233)
422 COG2909 MalT ATP-dependent tra 43.1 4.8E+02 0.01 28.5 28.9 192 263-457 427-647 (894)
423 PF11817 Foie-gras_1: Foie gra 42.5 98 0.0021 28.1 6.9 19 135-153 17-35 (247)
424 PF09670 Cas_Cas02710: CRISPR- 42.3 3.4E+02 0.0074 26.6 15.7 18 297-314 142-159 (379)
425 PF11663 Toxin_YhaV: Toxin wit 40.6 27 0.00059 27.7 2.5 31 405-437 107-137 (140)
426 PF09477 Type_III_YscG: Bacter 40.1 1.7E+02 0.0036 22.4 8.4 80 336-423 20-99 (116)
427 PF10255 Paf67: RNA polymerase 39.8 1.1E+02 0.0024 30.0 7.0 69 130-241 124-192 (404)
428 KOG0686 COP9 signalosome, subu 39.5 3.7E+02 0.0081 26.3 15.1 97 213-312 150-255 (466)
429 PF11663 Toxin_YhaV: Toxin wit 39.4 47 0.001 26.4 3.6 18 110-127 112-129 (140)
430 KOG2062 26S proteasome regulat 39.3 5.1E+02 0.011 27.7 19.9 328 75-421 289-634 (929)
431 PF09454 Vps23_core: Vps23 cor 38.9 49 0.0011 22.5 3.2 31 93-123 8-38 (65)
432 PF04190 DUF410: Protein of un 38.8 3.1E+02 0.0067 25.1 18.7 84 319-422 87-170 (260)
433 KOG4567 GTPase-activating prot 38.8 2.2E+02 0.0048 26.5 8.1 42 272-313 264-305 (370)
434 PF12968 DUF3856: Domain of Un 38.5 1.9E+02 0.0042 22.6 10.5 68 427-505 54-126 (144)
435 PF10366 Vps39_1: Vacuolar sor 38.2 1.8E+02 0.0039 22.2 8.3 27 95-121 41-67 (108)
436 KOG3807 Predicted membrane pro 37.9 3.5E+02 0.0076 25.5 13.7 59 363-421 281-339 (556)
437 KOG2659 LisH motif-containing 37.3 3E+02 0.0064 24.5 9.4 68 210-279 23-92 (228)
438 PRK13184 pknD serine/threonine 37.2 6.4E+02 0.014 28.3 26.1 97 218-320 480-586 (932)
439 smart00386 HAT HAT (Half-A-TPR 37.0 70 0.0015 17.1 3.6 13 373-385 3-15 (33)
440 KOG0128 RNA-binding protein SA 36.1 5.9E+02 0.013 27.6 33.1 64 92-156 112-178 (881)
441 PF03745 DUF309: Domain of unk 35.6 1.2E+02 0.0026 20.4 4.7 46 70-115 11-61 (62)
442 PRK11639 zinc uptake transcrip 35.3 2.2E+02 0.0048 23.9 7.4 61 84-145 17-77 (169)
443 PRK13800 putative oxidoreducta 34.8 7E+02 0.015 28.0 28.8 167 249-437 726-893 (897)
444 PF10475 DUF2450: Protein of u 34.4 3.9E+02 0.0084 25.0 9.7 88 58-150 127-219 (291)
445 KOG0687 26S proteasome regulat 34.4 4.1E+02 0.0088 25.2 14.4 26 394-419 105-130 (393)
446 PF10255 Paf67: RNA polymerase 33.6 3.3E+02 0.0072 26.8 9.1 68 429-506 123-191 (404)
447 PRK11619 lytic murein transgly 33.1 6.3E+02 0.014 27.0 37.1 180 217-418 283-464 (644)
448 TIGR02710 CRISPR-associated pr 32.7 4.8E+02 0.01 25.5 11.9 54 400-453 137-196 (380)
449 PF11768 DUF3312: Protein of u 32.3 5.7E+02 0.012 26.2 11.7 22 291-312 413-434 (545)
450 PF15297 CKAP2_C: Cytoskeleton 32.3 3.2E+02 0.0069 26.1 8.3 68 70-139 114-186 (353)
451 smart00777 Mad3_BUB1_I Mad3/BU 32.2 2.6E+02 0.0056 22.2 6.8 42 411-452 81-123 (125)
452 PF04097 Nic96: Nup93/Nic96; 31.6 6.5E+02 0.014 26.7 27.1 46 94-141 113-158 (613)
453 PF14561 TPR_20: Tetratricopep 29.7 2.3E+02 0.0049 20.8 9.8 30 285-314 21-50 (90)
454 PF14561 TPR_20: Tetratricopep 29.5 2.3E+02 0.005 20.8 8.9 55 54-108 18-73 (90)
455 KOG0551 Hsp90 co-chaperone CNS 29.4 5E+02 0.011 24.7 12.4 88 400-505 88-179 (390)
456 KOG2471 TPR repeat-containing 29.4 6.1E+02 0.013 25.6 28.3 60 480-558 620-681 (696)
457 KOG0376 Serine-threonine phosp 29.3 1.6E+02 0.0035 29.2 6.2 105 329-439 11-116 (476)
458 COG5071 RPN5 26S proteasome re 29.2 4.7E+02 0.01 24.3 9.9 22 217-238 135-156 (439)
459 PF12968 DUF3856: Domain of Un 28.9 2.9E+02 0.0062 21.7 9.6 72 12-83 9-80 (144)
460 PF09454 Vps23_core: Vps23 cor 28.7 1.9E+02 0.0042 19.7 5.4 51 475-527 4-54 (65)
461 COG0790 FOG: TPR repeat, SEL1 28.6 4.8E+02 0.01 24.2 21.7 83 263-352 53-143 (292)
462 PRK09462 fur ferric uptake reg 28.1 3.3E+02 0.0072 22.2 7.6 61 83-144 7-68 (148)
463 KOG2422 Uncharacterized conser 28.1 6.9E+02 0.015 25.9 19.0 174 106-313 251-446 (665)
464 PF10475 DUF2450: Protein of u 28.1 4.1E+02 0.0089 24.8 8.7 51 293-350 105-155 (291)
465 KOG2297 Predicted translation 27.4 5.2E+02 0.011 24.2 18.8 46 210-260 108-155 (412)
466 PF00244 14-3-3: 14-3-3 protei 27.3 4.6E+02 0.01 23.6 13.3 60 398-457 6-66 (236)
467 PF04910 Tcf25: Transcriptiona 27.2 5.9E+02 0.013 24.7 19.7 65 392-456 99-167 (360)
468 cd07153 Fur_like Ferric uptake 26.8 2.3E+02 0.005 21.7 5.9 43 65-107 7-49 (116)
469 cd07153 Fur_like Ferric uptake 26.7 1.8E+02 0.0039 22.4 5.3 48 98-145 5-52 (116)
470 PF13934 ELYS: Nuclear pore co 26.2 4.7E+02 0.01 23.3 13.5 87 360-455 79-167 (226)
471 KOG4521 Nuclear pore complex, 25.8 1E+03 0.023 27.2 15.8 130 214-346 984-1126(1480)
472 PF01475 FUR: Ferric uptake re 25.7 2.3E+02 0.005 22.0 5.7 46 62-107 11-56 (120)
473 PF04190 DUF410: Protein of un 25.6 5.2E+02 0.011 23.6 17.2 27 391-417 88-114 (260)
474 PF06957 COPI_C: Coatomer (COP 25.5 4.6E+02 0.01 26.0 8.6 166 326-527 122-348 (422)
475 PF01475 FUR: Ferric uptake re 25.4 1.7E+02 0.0037 22.7 4.9 49 97-145 11-59 (120)
476 PRK11639 zinc uptake transcrip 25.3 4.1E+02 0.0089 22.3 7.4 37 335-371 38-74 (169)
477 PF09477 Type_III_YscG: Bacter 25.1 3.2E+02 0.0069 21.0 9.4 52 66-123 48-99 (116)
478 KOG2581 26S proteasome regulat 25.0 6.7E+02 0.014 24.7 12.7 19 489-507 327-345 (493)
479 PF08311 Mad3_BUB1_I: Mad3/BUB 23.6 3.7E+02 0.0081 21.2 9.7 43 340-382 81-124 (126)
480 COG0735 Fur Fe2+/Zn2+ uptake r 23.3 2.8E+02 0.006 22.7 5.8 56 52-108 15-70 (145)
481 KOG2582 COP9 signalosome, subu 23.1 6.9E+02 0.015 24.1 17.3 97 95-192 104-210 (422)
482 PRK13342 recombination factor 23.1 7.5E+02 0.016 24.5 21.4 32 406-437 243-274 (413)
483 KOG1308 Hsp70-interacting prot 22.9 1.5E+02 0.0033 28.0 4.6 88 335-426 127-215 (377)
484 PF09868 DUF2095: Uncharacteri 22.2 3.3E+02 0.0071 21.0 5.3 25 99-123 67-91 (128)
485 KOG2422 Uncharacterized conser 21.8 9.1E+02 0.02 25.1 17.3 56 401-456 350-406 (665)
486 PHA02875 ankyrin repeat protei 21.7 7.8E+02 0.017 24.2 10.9 51 256-310 37-89 (413)
487 PRK08691 DNA polymerase III su 21.7 1E+03 0.022 25.6 11.9 103 15-130 165-282 (709)
488 KOG2297 Predicted translation 21.0 7E+02 0.015 23.4 19.0 160 211-413 163-341 (412)
489 KOG1114 Tripeptidyl peptidase 20.8 1.2E+03 0.026 26.0 14.7 71 408-493 1211-1281(1304)
490 PRK09857 putative transposase; 20.7 7E+02 0.015 23.3 10.0 66 360-427 209-274 (292)
491 PF04090 RNA_pol_I_TF: RNA pol 20.6 5.7E+02 0.012 22.3 14.5 60 96-156 44-104 (199)
492 PHA00425 DNA packaging protein 20.5 3.2E+02 0.007 19.3 6.0 54 372-438 14-67 (88)
493 KOG2908 26S proteasome regulat 20.4 7.6E+02 0.016 23.6 11.9 69 433-514 80-155 (380)
494 cd08819 CARD_MDA5_2 Caspase ac 20.3 3.6E+02 0.0077 19.8 7.0 38 369-412 48-85 (88)
495 KOG0292 Vesicle coat complex C 20.3 3.4E+02 0.0073 29.6 6.8 162 106-321 606-788 (1202)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-62 Score=512.91 Aligned_cols=469 Identities=19% Similarity=0.303 Sum_probs=393.5
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
++...|..++..|++.|+ +++|+++|+.|.+. .-++++..+++.++..|.+.|..++|+.+|+.|..
T Consensus 368 ~~~~~~~~~y~~l~r~G~--l~eAl~Lfd~M~~~----------gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~- 434 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGR--IKDCIDLLEDMEKR----------GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN- 434 (1060)
T ss_pred CCchHHHHHHHHHHHCcC--HHHHHHHHHHHHhC----------CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-
Confidence 456677777778888777 88888888888763 11345666666777777777777777777776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHh
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+..... ..
T Consensus 435 ---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv--vT 509 (1060)
T PLN03218 435 ---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV--HT 509 (1060)
T ss_pred ---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH--HH
Confidence 6777777777777777777777777777777777777777777777777777777777777777654321111 11
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCC
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 247 (583)
+......+.+.|++++|..+|+.|. ..++.||..+|+.+|.+|++.|++++|.++|.+|... ..++
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~-------------~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi 575 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMR-------------SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPI 575 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH-------------HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCC
Confidence 2222344556677777777777765 2567899999999999999999999999999999763 1158
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 007970 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327 (583)
Q Consensus 248 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 327 (583)
.||..+|+++|.+|++.|++++|.++|+.|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~Tyns 654 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSA 654 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999965 789999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 007970 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407 (583)
Q Consensus 328 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (583)
++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|.+ .++.||..+|+.||.+|++.|
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999987 489999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 487 (583)
++++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.+++..|.+. ++.||..+|++++.
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~----------------Gi~pd~~tynsLIg 797 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED----------------GIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 88999999999987
Q ss_pred HHHh----h-------------------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 488 ICVR----A-------------------AFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 488 ~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
.|.+ . +..++|..+|++|.+.|+.||..+|..++ ..+..
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~ 859 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL-GCLQL 859 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcc
Confidence 7542 1 12467999999999999999999999984 55443
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-63 Score=534.07 Aligned_cols=489 Identities=21% Similarity=0.279 Sum_probs=439.3
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhh------------------------cCCccccccCCcCHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRK------------------------FSDPDIVSDSKPDTAAYN 62 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~ 62 (583)
.||+++||.+|.+|++.|+ +++|+.+|++|....-. ........|+.||+.++|
T Consensus 149 ~~d~~~~n~li~~~~~~g~--~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGY--FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCeeEHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 4677777777777777776 77777777777542100 000011246677888888
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCC
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG 142 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 142 (583)
++|.+|++.|++++|.++|+.|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 999999999999999999999874 7889999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 007970 143 DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222 (583)
Q Consensus 143 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 222 (583)
+++.|.+++..+...+...... .+......|.+.|++++|.++|+.+. .||..+|+.+|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~--~~n~Li~~y~k~g~~~~A~~vf~~m~-----------------~~d~~s~n~li~~ 363 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVS--VCNSLIQMYLSLGSWGEAEKVFSRME-----------------TKDAVSWTAMISG 363 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchH--HHHHHHHHHHhcCCHHHHHHHHhhCC-----------------CCCeeeHHHHHHH
Confidence 9999999999998765333222 22334456778899999999999987 6899999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302 (583)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 302 (583)
|++.|++++|+++|++|.+. ++.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~---g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQD---NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHh---CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999987 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382 (583)
Q Consensus 303 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 382 (583)
++|.++|++|. .+|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.+++..
T Consensus 441 ~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 441 DKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 99999999995 47889999999999999999999999999986 5899999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhh
Q 007970 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462 (583)
Q Consensus 383 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 462 (583)
+.+. |+.++..++++||.+|++.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|+++|++|.+.
T Consensus 515 ~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----- 583 (857)
T PLN03077 515 VLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES----- 583 (857)
T ss_pred HHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Confidence 9884 99999999999999999999999999999987 589999999999999999999999999999987
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHH
Q 007970 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME-EHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDR 541 (583)
Q Consensus 463 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 541 (583)
|+.||..||..++.+|.+.|++++|.++|+.|. ++|+.|+..+|.++ ++++++.
T Consensus 584 -----------g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l-v~~l~r~------------- 638 (857)
T PLN03077 584 -----------GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV-VDLLGRA------------- 638 (857)
T ss_pred -----------CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH-HHHHHhC-------------
Confidence 789999999999999999999999999999998 78999999999998 9999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccc
Q 007970 542 RRERKRAAEAFKFWLGLPNSYYGSEWRL 569 (583)
Q Consensus 542 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 569 (583)
|++++|.++++.||-.|+...|..
T Consensus 639 ----G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 639 ----GKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred ----CCHHHHHHHHHHCCCCCCHHHHHH
Confidence 999999999999999999888864
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-61 Score=504.82 Aligned_cols=487 Identities=17% Similarity=0.240 Sum_probs=421.5
Q ss_pred CCCCCC-CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHH
Q 007970 1 MLRSGY-LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQ 79 (583)
Q Consensus 1 m~~~g~-~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 79 (583)
|.+.|+ .|+..+++.++.+|++.|. .++|+.+|+.|. .||..+|+.++.+|++.|++++|.+
T Consensus 396 M~~~gvv~~~~v~~~~li~~~~~~g~--~~eAl~lf~~M~---------------~pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 396 MEKRGLLDMDKIYHAKFFKACKKQRA--VKEAFRFAKLIR---------------NPTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHCCC--HHHHHHHHHHcC---------------CCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 556675 4677788888888888887 888888877662 3788888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhH
Q 007970 80 LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159 (583)
Q Consensus 80 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 159 (583)
+|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|...+.
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888876542
Q ss_pred HHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007970 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239 (583)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 239 (583)
.... ..+......+.+.|++++|.++|+.|... ..++.||..+|+.+|.+|++.|++++|.++|+.|
T Consensus 539 ~PD~--vTYnsLI~a~~k~G~~deA~~lf~eM~~~-----------~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 539 KPDR--VVFNALISACGQSGAVDRAFDVLAEMKAE-----------THPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2211 12233344455678888888888888521 1356899999999999999999999999999999
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007970 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319 (583)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 319 (583)
.+. ++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ .|+.
T Consensus 606 ~e~---gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~ 681 (1060)
T PLN03218 606 HEY---NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIK 681 (1060)
T ss_pred HHc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCC
Confidence 998 699999999999999999999999999999999999999999999999999999999999999999965 7899
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007970 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399 (583)
Q Consensus 320 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 399 (583)
||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSIL 760 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999874 899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHhHHHHHHHHHHH
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----A-------------------RKPGEALLLWKEIKE 456 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~ 456 (583)
+.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|+.+|++|.+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876432 1 124679999999998
Q ss_pred HhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~ 536 (583)
. |+.||..+|..++.++.+.+..+.+..+++.|...+..|+..+|+++ ++-++.
T Consensus 841 ~----------------Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~L-i~g~~~--------- 894 (1060)
T PLN03218 841 A----------------GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTL-VDGFGE--------- 894 (1060)
T ss_pred C----------------CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHH-HHhhcc---------
Confidence 7 89999999999998888999999999999999777888889999988 554332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 007970 537 ARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 537 ~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
..++|+.++..|
T Consensus 895 ----------~~~~A~~l~~em 906 (1060)
T PLN03218 895 ----------YDPRAFSLLEEA 906 (1060)
T ss_pred ----------ChHHHHHHHHHH
Confidence 235788888665
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.1e-60 Score=506.41 Aligned_cols=500 Identities=18% Similarity=0.262 Sum_probs=446.3
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHH
Q 007970 2 LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLF 81 (583)
Q Consensus 2 ~~~g~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 81 (583)
++.|+.||+.+||.+|.+|++.|+ +++|..+|+.|. .||+.+||++|.+|++.|++++|+++|
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~--~~~A~~lf~~m~---------------~~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGD--VVSARLVFDRMP---------------RRDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCC--HHHHHHHHhcCC---------------CCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 456777777777888888888888 888888888873 579999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHH
Q 007970 82 DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161 (583)
Q Consensus 82 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 161 (583)
++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|+.|... +.
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d~ 354 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK--DA 354 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC--Ce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999763 22
Q ss_pred HHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007970 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (583)
. .+......+.+.|++++|.++|+.|.. .++.||..+|+.++.+|++.|++++|.+++..+.+
T Consensus 355 ~----s~n~li~~~~~~g~~~~A~~lf~~M~~-------------~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 355 V----SWTAMISGYEKNGLPDKALETYALMEQ-------------DNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred e----eHHHHHHHHHhCCCHHHHHHHHHHHHH-------------hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2 233445667889999999999999873 46689999999999999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007970 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321 (583)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 321 (583)
. |..|+..+|+.|+.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||
T Consensus 418 ~---g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd 488 (857)
T PLN03077 418 K---GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPN 488 (857)
T ss_pred h---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCC
Confidence 8 6999999999999999999999999999999875 5788999999999999999999999999964 58999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007970 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401 (583)
Q Consensus 322 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 401 (583)
..+|+.++.+|++.|..+.+.+++..+.+.|+.++..++++++.+|++.|++++|.++|+.+ .+|..+|+++|.
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~ 562 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLT 562 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887 379999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHH
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 481 (583)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+.. ++.|+..+
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---------------gi~P~~~~ 627 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---------------SITPNLKH 627 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh---------------CCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999554 78999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhccc------------c-----hhHHHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK------------H-----ASQARQDRRRE 544 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~------------~-----~~~~~~~~~~~ 544 (583)
|.+++++|.+.|++++|.+++++| ++.||..+|.++ +..+....... . ..-.-.+.+..
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aL-l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGAL-LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 999999999999999999999999 489999999998 54443211110 0 01112456788
Q ss_pred HHHHHHHHHHHhcCCCC----CCCcccccCC
Q 007970 545 RKRAAEAFKFWLGLPNS----YYGSEWRLDP 571 (583)
Q Consensus 545 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 571 (583)
.|+.++|.++.+.|... ..+.-|....
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence 89999999988777332 3367777543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.3e-59 Score=485.38 Aligned_cols=443 Identities=19% Similarity=0.271 Sum_probs=374.4
Q ss_pred CCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 007970 6 YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85 (583)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 85 (583)
+.||..+|+.++.+|++.++ .+.|.+++..|.+ .|+.||+.+||.++.+|++.|++++|.++|++|.
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~--~~~a~~l~~~m~~-----------~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 185 (697)
T PLN03081 119 FTLPASTYDALVEACIALKS--IRCVKAVYWHVES-----------SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH-----------hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence 55666666666666666665 6666666666655 3566667777777777777777777777777665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHH
Q 007970 86 EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII 165 (583)
Q Consensus 86 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 165 (583)
+ ||..+|+.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+...+.....
T Consensus 186 ~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~-- 259 (697)
T PLN03081 186 E----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT-- 259 (697)
T ss_pred C----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc--
Confidence 3 6666777777777777777777777777776666677777777777777777777776666666554322111
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 245 (583)
.........|.+.|++++|.++|+.+. ++|..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--- 319 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMP-----------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--- 319 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCC-----------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 112223456778999999999999997 689999999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 007970 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325 (583)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 325 (583)
|+.||..||+.++.+|++.|++++|.+++..|.+.|++|+..+++.|+.+|++.|++++|.++|++|. .||..+|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~ 394 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISW 394 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeH
Confidence 69999999999999999999999999999999999999999999999999999999999999999995 4799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007970 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405 (583)
Q Consensus 326 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (583)
+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+..++.|+..+|+.++.+|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998877999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHH
Q 007970 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDA 484 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~ 484 (583)
.|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|..+++++.+ +.|+ ..+|..
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~------------------~~p~~~~~y~~ 533 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG------------------MGPEKLNNYVV 533 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC------------------CCCCCCcchHH
Confidence 99999999999876 5789999999999999999999999999998864 4665 579999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 485 LADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
|+++|.+.|++++|.++++.|.+.|+...
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999888643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-58 Score=478.06 Aligned_cols=481 Identities=17% Similarity=0.249 Sum_probs=428.1
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
+++..+|+.+|.+|++.|+ +++|+.+|+.|... .+..||..+|+.++.+|++.++++.|.+++..|.+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~--~~~Al~~f~~m~~~----------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~ 151 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGR--HREALELFEILEAG----------CPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151 (697)
T ss_pred CCCceeHHHHHHHHHcCCC--HHHHHHHHHHHHhc----------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4466799999999999999 99999999999763 34679999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHH
Q 007970 87 FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166 (583)
Q Consensus 87 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 166 (583)
.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|...+........
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 9999999999999999999999999999999995 479999999999999999999999999999876533222111
Q ss_pred hhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCC
Q 007970 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246 (583)
Q Consensus 167 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 246 (583)
......+...|....+.+++..+. ..++.+|..+|+.|+.+|++.|++++|.++|+.|.
T Consensus 228 --~~ll~a~~~~~~~~~~~~l~~~~~-------------~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------ 286 (697)
T PLN03081 228 --VVMLRASAGLGSARAGQQLHCCVL-------------KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------ 286 (697)
T ss_pred --HHHHHHHhcCCcHHHHHHHHHHHH-------------HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------
Confidence 111223345677888888888776 35667999999999999999999999999999884
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 007970 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326 (583)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 326 (583)
.+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+ .|+.||..+|+
T Consensus 287 -~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~ 364 (697)
T PLN03081 287 -EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANT 364 (697)
T ss_pred -CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehH
Confidence 4588999999999999999999999999999999999999999999999999999999999999966 78899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 007970 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406 (583)
Q Consensus 327 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (583)
.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+. |+.||..||++++.+|++.
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999985 468899999999999999999999999999874 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHH
Q 007970 407 GLVEEAKRIIERMKE-NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485 (583)
Q Consensus 407 g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 485 (583)
|..++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.++++++ ++.|+..+|++|
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-------------------~~~p~~~~~~~L 500 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-------------------PFKPTVNMWAAL 500 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-------------------CCCCCHHHHHHH
Confidence 999999999999975 689999999999999999999999999998765 468999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCC---
Q 007970 486 ADICVRAAFFRKALEIVACMEEHGIPPN-KTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNS--- 561 (583)
Q Consensus 486 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 561 (583)
+.+|...|+++.|.++++++. ++.|+ ..+|..+ ++++.+. |+.++|.++++.|...
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L-~~~y~~~-----------------G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVL-LNLYNSS-----------------GRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHH-HHHHHhC-----------------CCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999987 45665 5578776 8888888 9999999999888543
Q ss_pred -CCCcccccC
Q 007970 562 -YYGSEWRLD 570 (583)
Q Consensus 562 -~~~~~~~~~ 570 (583)
+++.-|..-
T Consensus 561 k~~g~s~i~~ 570 (697)
T PLN03081 561 MHPACTWIEV 570 (697)
T ss_pred cCCCeeEEEE
Confidence 457778653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.2e-29 Score=273.90 Aligned_cols=437 Identities=14% Similarity=0.091 Sum_probs=328.5
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.+++..++..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+.+ +.+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 345566677777777777777777777777766432 244556666667777777777777777776654 445666777
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCH
Q 007970 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213 (583)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (583)
+...+.+.|+.++|...++.+....+...... ...+..+...|++++|...++.+. ...+.+.
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~--------------~~~~~~~ 601 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA---LALAQYYLGKGQLKKALAILNEAA--------------DAAPDSP 601 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHH---HHHHHHHHHCCCHHHHHHHHHHHH--------------HcCCCCH
Confidence 77777777777777777777665544333222 122344556777788888877776 2335667
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
.+|..+..++...|++++|...|+.+.+. .+.+...+..+...+...|++++|..+++.+.+.. +.+...+..++
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 78888888888888888888888888764 34456677788888888888888888888887754 55677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 373 (583)
..+...|++++|..+++.+.... +.+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 88888888888888888886532 4566777888888888899999999998888763 4556777788888889999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.++|+++.+.. +++..++..+...+...|+ .+|+..+++
T Consensus 753 ~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 999998888877 456678888888888999999999999999988763 5577888888888888888 779999998
Q ss_pred HHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhccc
Q 007970 454 IKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532 (583)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 532 (583)
+.+. .|+ ..++..+..++.+.|++++|.++++++.+.+. .++..+..+ +..+...
T Consensus 829 ~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l-~~~~~~~---- 884 (899)
T TIGR02917 829 ALKL------------------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHL-ALALLAT---- 884 (899)
T ss_pred HHhh------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHH-HHHHHHc----
Confidence 8865 444 46777888899999999999999999987543 256666655 7777776
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007970 533 HASQARQDRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 559 (583)
|+.++|.+.++++.
T Consensus 885 -------------g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 885 -------------GRKAEARKELDKLL 898 (899)
T ss_pred -------------CCHHHHHHHHHHHh
Confidence 99999999998763
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.2e-27 Score=263.21 Aligned_cols=267 Identities=14% Similarity=0.155 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+..++..+...+.+.|+.++|..++.++... .+.+...+..++..+...|++++|..+++.+.+.. +.+...+..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 606 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAEL----NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLM 606 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 3444455555555555555555555554443 22233444445555555555555555555554432 334445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
+..+|...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.... +.+..++..++..+...|
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 5555555555555555555554321 2233444455555555555555555555555432 223445555555555555
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.|+++... .|+..++..+..++...|++++|.+.+
T Consensus 684 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 684 RTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555442 2334445555555555555555555555555543 233344455555555555555555555
Q ss_pred HHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+++.+.. +.+...+..+...|.+.|++++|...++++.+
T Consensus 760 ~~~l~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 760 EAWLKTH-----------------PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHhC-----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5555431 22345555556666666666666666666654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.2e-21 Score=215.88 Aligned_cols=449 Identities=11% Similarity=0.051 Sum_probs=309.7
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHH----------------HHHHHHHHHhcC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA----------------YNAVLNACANLG 72 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~li~~~~~~g 72 (583)
|...+...+..+.+.|+ .++|...++++.+. .|.+... ...+...+.+.|
T Consensus 61 ~p~~~~~~~~~~l~~g~--~~~A~~~l~~l~~~------------~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGD--SDGAQKLLDRLSQL------------APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred CHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhh------------CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 46678888888889998 99999999999884 2223332 234455788999
Q ss_pred CcchHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHH
Q 007970 73 KPKKFLQLFDQMHEFGAKPDVL-TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151 (583)
Q Consensus 73 ~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 151 (583)
++++|++.|+.+.+.+. |+.. ............|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..+
T Consensus 127 ~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999987543 3322 11112222234589999999999999985 667788889999999999999999999
Q ss_pred HHHHhhhHHHH----HH----------------H-----------------Hhh--------------hhccccccCCCC
Q 007970 152 QAMREGRRDVC----KI----------------I-----------------REL--------------DLEDYSSENEGD 180 (583)
Q Consensus 152 ~~~~~~~~~~~----~~----------------~-----------------~~~--------------~~~~~~~~~~~~ 180 (583)
+++....+... .+ . ..+ ...+..+...|+
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 98754321000 00 0 000 011344556799
Q ss_pred CCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHH------
Q 007970 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY------ 254 (583)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------ 254 (583)
+++|+..|++.+. ..+.+..++..+..++.+.|++++|+..|++..+..+ ..+....|
T Consensus 285 ~~~A~~~l~~aL~--------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p--~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 285 GGKAIPELQQAVR--------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP--HSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CccchhHHHHHHHh
Confidence 9999999999872 2355788999999999999999999999999887521 11111112
Q ss_pred ------HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 007970 255 ------TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328 (583)
Q Consensus 255 ------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 328 (583)
......+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++++.. +.+...+..+
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L 425 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGL 425 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 122446778999999999999999875 5567778888999999999999999999987642 2223232222
Q ss_pred ------------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 329 ------------------------------------------IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 329 ------------------------------------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
...+...|++++|+..|++..+.. +-+...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 233446788889999998888763 3356677788888
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------------------
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN------------------------ 422 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------------ 422 (583)
+.+.|++++|...++++.+. .+.+...+..+...+...++.++|+..++.+...
T Consensus 505 ~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 88999999999999888763 2333333333333334444444444443332100
Q ss_pred ---------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHH
Q 007970 423 ---------------GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALA 486 (583)
Q Consensus 423 ---------------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~ 486 (583)
..+++...+..+...+...|++++|+..|+++.+. .|+ ...+..++
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~------------------~P~~~~a~~~la 644 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR------------------EPGNADARLGLI 644 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHH
Confidence 02334445566677777888888888888888765 444 47777788
Q ss_pred HHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 487 DICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.+|...|++++|++.++...+ ..|+..
T Consensus 645 ~~~~~~g~~~eA~~~l~~ll~--~~p~~~ 671 (1157)
T PRK11447 645 EVDIAQGDLAAARAQLAKLPA--TANDSL 671 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHhc--cCCCCh
Confidence 888888888888888887764 344433
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.4e-21 Score=212.30 Aligned_cols=425 Identities=11% Similarity=-0.008 Sum_probs=293.7
Q ss_pred cCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC-------------
Q 007970 23 SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA------------- 89 (583)
Q Consensus 23 ~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------- 89 (583)
.|+ .++|+..++++.+. .|.+...+..+...+...|++++|+..|+++.+...
T Consensus 160 ~g~--~~~A~~~L~~ll~~------------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 160 PAQ--RPEAINQLQRLNAD------------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred Ccc--HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 355 78888888888774 455778888999999999999999999998755321
Q ss_pred -----C--------------CCHHHH---------------------HHHHHHHHhcCChhHHHHHHHHHHHhCCCcchh
Q 007970 90 -----K--------------PDVLTY---------------------NVMIKLCARASRKHLLVFVLERILEMGITLCMT 129 (583)
Q Consensus 90 -----~--------------~~~~~~---------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 129 (583)
. |+...+ ......+...|++++|+..|++.++.. +.+..
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~ 304 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSE 304 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 0 110000 011334567799999999999999875 55788
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHH---HH--------HhhhhccccccCCCCCCCcHHHHHhhcCCCCCC
Q 007970 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK---II--------RELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198 (583)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (583)
.+..+..++.+.|++++|+..|++..+..++... +. ......+..+...|++++|...|++++.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~----- 379 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ----- 379 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 9999999999999999999999998876654321 10 0111224455678999999999999883
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH-----------------
Q 007970 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL----------------- 261 (583)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----------------- 261 (583)
..+.+..++..+..++...|++++|++.|+++.+. .+.+...+..+...+
T Consensus 380 ---------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~----~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 380 ---------VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM----DPGNTNAVRGLANLYRQQSPEKALAFIASLSA 446 (1157)
T ss_pred ---------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 23456778889999999999999999999999875 223344444333333
Q ss_pred -------------------------HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007970 262 -------------------------VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316 (583)
Q Consensus 262 -------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 316 (583)
...|++++|++.+++.++.. |-+...+..+...|.+.|++++|...++++++..
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455666666666555543 3344455555556666666666666666554321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 007970 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK---------ISYTTLMKAFALSSQPKLANKVFDEMLRDP 387 (583)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 387 (583)
+.+...+..+...+...++.++|+..++.+......++. ..+..+...+...|+.++|..+++.
T Consensus 526 --P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----- 598 (1157)
T PRK11447 526 --PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----- 598 (1157)
T ss_pred --CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----
Confidence 123333333333444556666666655544322111111 1122344556677777777777662
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccC
Q 007970 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467 (583)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 467 (583)
.+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|++.++.+.+.
T Consensus 599 -~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~---------- 666 (1157)
T PRK11447 599 -QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT---------- 666 (1157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----------
Confidence 24556677888999999999999999999999862 446788999999999999999999999988754
Q ss_pred CCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 468 DSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 468 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
.|+ ..++..+..++...|++++|.++++.+...
T Consensus 667 --------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 --------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred --------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 554 466777888999999999999999999753
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-22 Score=188.37 Aligned_cols=406 Identities=14% Similarity=0.100 Sum_probs=332.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (583)
...-.+-..+.+..+++....--....+... .-..+|..+.+.+-..|++++|+.+++.+++.. +.....|..+..++
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al 160 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAAL 160 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHH
Confidence 3333444555666666665555544444332 346788889999999999999999999999875 55678899999999
Q ss_pred HcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 007970 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218 (583)
Q Consensus 139 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (583)
...|+.+.|...|....+..|+.......+ +......|++.+|..-|.+.+.. .+.=..+|+.
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~l---gnLlka~Grl~ea~~cYlkAi~~--------------qp~fAiawsn 223 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDLYCARSDL---GNLLKAEGRLEEAKACYLKAIET--------------QPCFAIAWSN 223 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcchhhhhcch---hHHHHhhcccchhHHHHHHHHhh--------------CCceeeeehh
Confidence 999999999999998888777666554444 34455678999999888887622 1223678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
|...+-..|+...|+..|++..+. .|+ ...|..|...|...+.++.|...|....... +.....+..+...|.
T Consensus 224 Lg~~f~~~Gei~~aiq~y~eAvkl-----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 224 LGCVFNAQGEIWLAIQHYEEAVKL-----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYY 297 (966)
T ss_pred cchHHhhcchHHHHHHHHHHhhcC-----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEe
Confidence 999999999999999999999874 454 6789999999999999999999999988753 445677888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 377 (583)
..|.++.|+..|++.+..+ +.=...|+.|..++-..|+..+|++.|.+.... .+......+.|..++...|.++.|.
T Consensus 298 eqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred ccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHH
Confidence 9999999999999998643 223568999999999999999999999999886 3445778899999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV-ATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
.+|....+ -.+.-...++.|...|-+.|++++|+..|++.+. +.|+. ..|+.+...|-..|+.+.|++.+.+++.
T Consensus 375 ~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 375 RLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999886 2333356789999999999999999999999986 67764 5899999999999999999999999986
Q ss_pred HhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 516 (583)
. .|.. ..++.|..+|...|+..+|+.-++...+ ++||-..
T Consensus 451 ~------------------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 451 I------------------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred c------------------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 4 8886 8999999999999999999999999884 6777543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=4.3e-21 Score=179.52 Aligned_cols=427 Identities=15% Similarity=0.075 Sum_probs=342.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHc
Q 007970 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (583)
...|..-..+.|++++|.+.-...-+.+. .+....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 55677777899999999998887766542 12233333445566666777666554444444 35677899999999999
Q ss_pred CCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH-HHHHH
Q 007970 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR-IYTTL 219 (583)
Q Consensus 141 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 219 (583)
.|++++|+.+++.+.+..|+..+.. ...+.++...|+.+.|.+.|...++ +.|+.. +.+.+
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~---inla~al~~~~~~~~a~~~~~~alq---------------lnP~l~ca~s~l 190 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAY---INLAAALVTQGDLELAVQCFFEALQ---------------LNPDLYCARSDL 190 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHH---hhHHHHHHhcCCCcccHHHHHHHHh---------------cCcchhhhhcch
Confidence 9999999999999999887765544 3446677889999999999998872 235444 34455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
.......|+.++|...|.+.... .+--...|+.|...+...|+...|+..|++..+.. |.-...|-.|...|...
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~----qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIET----QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEA 265 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhh----CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHH
Confidence 56666789999999999988874 23336789999999999999999999999999875 33467888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
+.++.|...|.+..... +.....+..+...|...|..+-|+..|++..+.. +.-...|+.+..++-..|+..+|.+.
T Consensus 266 ~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred hcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 99999999999887542 3456778888888999999999999999999862 33478899999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
|++... -.+......+.|...|...|.+++|..+|....+. .|. ...++.|...|-++|++++|+..|+++++
T Consensus 343 YnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-- 416 (966)
T KOG4626|consen 343 YNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-- 416 (966)
T ss_pred HHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--
Confidence 999987 34556778899999999999999999999999874 454 45789999999999999999999999985
Q ss_pred hhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHH
Q 007970 459 EVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQA 537 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (583)
|+|+. ..|+.+...|...|+...|...+.+... +.|.-..-.+-+..++...
T Consensus 417 ----------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDs--------- 469 (966)
T KOG4626|consen 417 ----------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDS--------- 469 (966)
T ss_pred ----------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhcc---------
Confidence 59997 8999999999999999999999999875 5676554444446777776
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007970 538 RQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 538 ~~~~~~~~~~~~~a~~~~~ 556 (583)
|...+|+.-++
T Consensus 470 --------Gni~~AI~sY~ 480 (966)
T KOG4626|consen 470 --------GNIPEAIQSYR 480 (966)
T ss_pred --------CCcHHHHHHHH
Confidence 88888886664
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.7e-20 Score=183.16 Aligned_cols=279 Identities=16% Similarity=0.143 Sum_probs=212.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP---DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
.+..++..+...+...|++++|..+++.+.... ..+ ....+..+...+.+.|+++.|..+|+.+.+.. +.+..
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 142 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEG 142 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHH
Confidence 445677888888888888888888888877641 111 12456777888888888888888888888753 45677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPD---VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 364 (583)
++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 221 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLG 221 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHH
Confidence 7888888888888888888888888654322211 1235566677788899999999999888753 33456777788
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 444 (583)
..+.+.|++++|.++|+++.+. .......+++.++.+|.+.|++++|.+.++++.+. .|+...+..++..+.+.|++
T Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 222 DLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCH
Confidence 8888999999999999998763 11112456788888999999999999999998875 56777778888889999999
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR---AAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 299 ~~A~~~l~~~l~~------------------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 299 EAAQALLREQLRR------------------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHh------------------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999999988875 7888888877776654 458889999999998777777775
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.6e-18 Score=179.60 Aligned_cols=258 Identities=12% Similarity=-0.029 Sum_probs=209.0
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (583)
..+++++|.+.|+.....+ ...| ....+..+...+...|++++|+..++..++.. +.....|..+..++...|+++
T Consensus 306 ~~~~y~~A~~~~~~al~~~--~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLG--KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 3478999999999998752 1233 35678888888899999999999999999864 445678888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 383 (583)
+|...|+++++.. +.+...|..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|...|+..
T Consensus 383 eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 383 KAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999997642 4467888999999999999999999999999873 445777888888999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV-----A-TYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+ ..+.+...++.+..++...|++++|++.|++..+.....+. . .++.....+...|++++|.++++++...
T Consensus 460 l~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 460 KK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 87 34567888999999999999999999999999875211111 1 1122222344479999999999998865
Q ss_pred hhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 458 CEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
.|+. ..+..+..++.+.|++++|.+.+++..+.
T Consensus 538 ------------------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 538 ------------------DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ------------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5554 67888999999999999999999998763
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.6e-18 Score=176.15 Aligned_cols=432 Identities=14% Similarity=0.030 Sum_probs=292.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++.+ +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4557788889999999999999999874 5778889999999999999999999999999875 556778999999999
Q ss_pred cCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
..|++++|+.-|..+...++.............. . ..+.......+. ..+.+...+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l---~----~~a~~~~~~~l~--------------~~~~~~~~~~~~ 264 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL---K----KFAESKAKEILE--------------TKPENLPSVTFV 264 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH---H----HHHHHHHHHHHh--------------cCCCCCCCHHHH
Confidence 9999999998886654322111000000000000 0 001111111110 001111122222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHH---HHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSA---LVKAGSMDRARQVLAEMTRIG--VPANRITYNILL 293 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 293 (583)
.. |....+......-+..... ..+. ...+..+... ....+++++|.+.|+...+.+ .+.....+..+.
T Consensus 265 ~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 265 GN-YLQSFRPKPRPAGLEDSNE-----LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338 (615)
T ss_pred HH-HHHHccCCcchhhhhcccc-----cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 22 2222222222221221111 1111 1111111111 123478999999999999765 233556788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 373 (583)
.++...|++++|+..|++.+... +.....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 89999999999999999997642 3346688888899999999999999999998863 44678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
++|...|++..+ ..+.+...+..+..++.+.|++++|+..|++..+. .+.+...++.+..++...|++++|+..|++
T Consensus 416 ~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 416 AQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999987 34566788888999999999999999999999875 344578899999999999999999999999
Q ss_pred HHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhhhhhcc
Q 007970 454 IKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK-YKKIYVEMHSRMFTS 531 (583)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~~~~~~l~~~~~~ 531 (583)
+.+.... ..+..++. ..+...+..+...|++++|..++++..+ +.|+... +..+ ..++.+.
T Consensus 493 Al~l~p~-----------~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~l-a~~~~~~--- 555 (615)
T TIGR00990 493 AIELEKE-----------TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATM-AQLLLQQ--- 555 (615)
T ss_pred HHhcCCc-----------cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHH-HHHHHHc---
Confidence 9875210 00001111 1122222334457999999999999875 4565543 3333 4444444
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 532 KHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
|++++|+++++..
T Consensus 556 --------------g~~~eAi~~~e~A 568 (615)
T TIGR00990 556 --------------GDVDEALKLFERA 568 (615)
T ss_pred --------------cCHHHHHHHHHHH
Confidence 8888888877654
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.9e-19 Score=177.19 Aligned_cols=297 Identities=12% Similarity=0.094 Sum_probs=206.5
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCC
Q 007970 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181 (583)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (583)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+......
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------------------- 101 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL--------------------- 101 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC---------------------
Confidence 3455667777777777777664 445556677777777777777777777666541000
Q ss_pred CCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 007970 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261 (583)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (583)
.......++..++..|.+.|++++|.++|..+.+. .+.+..++..++..+
T Consensus 102 --------------------------~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~ 151 (389)
T PRK11788 102 --------------------------TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE----GDFAEGALQQLLEIY 151 (389)
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC----CcchHHHHHHHHHHH
Confidence 00011245667777777778888888877777664 334566777777777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPAN----RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 337 (583)
.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|+
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCC
Confidence 778888888888877776542221 1234556667778888888888888876532 3345567777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007970 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417 (583)
Q Consensus 338 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 417 (583)
+++|.++|+++...+......++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888876532222456777888888888888888888888763 3555666788888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHH
Q 007970 418 RMKENGFYPNVATYGSLANGISL---ARKPGEALLLWKEIKER 457 (583)
Q Consensus 418 ~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 457 (583)
++.+. .|+..+++.++..+.. .|+.++++.+++++.+.
T Consensus 307 ~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 307 EQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 88764 5788888877776654 45788888888888875
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.6e-18 Score=174.71 Aligned_cols=333 Identities=9% Similarity=0.022 Sum_probs=270.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
-...++..+.+.|++++|..+++........ +...+..++.++...|+++.|...++++.+.. |.+...+..+..++.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445677788999999999999999887654 34455566677778999999999999999985 667788889999999
Q ss_pred cCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
..|++++|...++...... +.+...+..+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~---------------------------------------------------P~~~~a~~~l 150 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF---------------------------------------------------SGNSQIFALH 150 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC---------------------------------------------------CCcHHHHHHH
Confidence 9999999999999887632 4557788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
..++...|++++|...+..+... .+.+...+..+ ..+...|++++|...++.+.+....++......+..++...
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQE----VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 99999999999999999988764 22333344333 34788999999999999988765334445556667888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 375 (583)
|++++|+..++++.... +.+...+..+...+...|++++ |+..|++..... +.+...+..+...+...|++++
T Consensus 226 g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 226 GKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999997642 4567788889999999999986 899999998863 4467788899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT-YGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
|...++.+.+ ..+.+...+..+..++.+.|++++|++.++++... .|+... +..+..++...|++++|+..|+++
T Consensus 303 A~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 303 AIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999987 34556777888999999999999999999999875 455433 444567789999999999999999
Q ss_pred HHH
Q 007970 455 KER 457 (583)
Q Consensus 455 ~~~ 457 (583)
.+.
T Consensus 379 l~~ 381 (656)
T PRK15174 379 IQA 381 (656)
T ss_pred HHh
Confidence 876
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=8.7e-18 Score=173.30 Aligned_cols=332 Identities=10% Similarity=0.022 Sum_probs=271.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (583)
-...++..+.+.|+++.|..+++...... +-+...+..++.+....|++++|...++.+....
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---------------- 106 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---------------- 106 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC----------------
Confidence 34556777889999999999999998875 5556677777788888999999999999988732
Q ss_pred ccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHH
Q 007970 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254 (583)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 254 (583)
|.+...+..+...+...|++++|.+.++++... .+.+...+
T Consensus 107 -----------------------------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----~P~~~~a~ 147 (656)
T PRK15174 107 -----------------------------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA----FSGNSQIF 147 (656)
T ss_pred -----------------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHH
Confidence 455778889999999999999999999999885 34457788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+++... .++...+..+..++..
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHH
Confidence 899999999999999999999887664 2334444333 347889999999999999876422 2334455566778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL----ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
.|++++|+..++++.... +.+...+..+...+...|++++ |...|+++.+ ..+.+...+..+...+.+.|+++
T Consensus 225 ~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 225 VGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999874 4467778889999999999985 8999999987 34567889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADIC 489 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 489 (583)
+|+..+++..+.. +.+...+..+..++...|++++|+..++++.+. .|+. ..+..+..++
T Consensus 302 eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------------------~P~~~~~~~~~a~al 362 (656)
T PRK15174 302 KAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE------------------KGVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CccchHHHHHHHHHH
Confidence 9999999999863 335667778888999999999999999999876 6665 3344457788
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 007970 490 VRAAFFRKALEIVACMEE 507 (583)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~ 507 (583)
...|++++|...++...+
T Consensus 363 ~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999999875
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.4e-17 Score=175.55 Aligned_cols=409 Identities=11% Similarity=0.043 Sum_probs=298.2
Q ss_pred HHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCH
Q 007970 14 STVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93 (583)
Q Consensus 14 ~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 93 (583)
.-.+......|+ .++|+.++.+.... .+.+...+..+...+.+.|++++|..+|+...+... .+.
T Consensus 19 ~d~~~ia~~~g~--~~~A~~~~~~~~~~------------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~ 83 (765)
T PRK10049 19 ADWLQIALWAGQ--DAEVITVYNRYRVH------------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QND 83 (765)
T ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH
Confidence 334455666777 88999888888652 344566788899999999999999999999887542 345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 007970 94 LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173 (583)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (583)
..+..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++....
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------------- 146 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------------- 146 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------
Confidence 667778888889999999999999998874 55666 8888888999999999999998888742
Q ss_pred cccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH--
Q 007970 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH-- 251 (583)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-- 251 (583)
+.+...+..+..++...+..++|++.++..... |+.
T Consensus 147 ------------------------------------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~------p~~~~ 184 (765)
T PRK10049 147 ------------------------------------PQTQQYPTEYVQALRNNRLSAPALGAIDDANLT------PAEKR 184 (765)
T ss_pred ------------------------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC------HHHHH
Confidence 345666677788888889999999888766531 221
Q ss_pred ----HHHHHHHHHHH-----HcCCh---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 007970 252 ----VTYTTVVSALV-----KAGSM---DRARQVLAEMTRI-GVPANRI-TYN----ILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 252 ----~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
.....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 11122222221 12234 7788888888854 1222221 111 11334567799999999999997
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--
Q 007970 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP---TKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-- 388 (583)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 388 (583)
+.....|+. .-..+...|...|++++|+.+|+++....... .......+..++...|++++|..+++.+.....
T Consensus 265 ~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~ 343 (765)
T PRK10049 265 AEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF 343 (765)
T ss_pred ccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence 643222332 22224678899999999999999987653111 124456667788899999999999999876311
Q ss_pred --------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 389 --------VKVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 389 --------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..|+ ...+..+...+...|++++|+++++++... .+.+...+..+...+...|++++|++.++++.+.
T Consensus 344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 344 LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1123 235567788899999999999999999876 3556778889999999999999999999999976
Q ss_pred hhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 458 CEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
.|+. ..+..++..+...|++++|+++++.+.+ ..|+.....
T Consensus 423 ------------------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~ 464 (765)
T PRK10049 423 ------------------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQ 464 (765)
T ss_pred ------------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 6774 6777788899999999999999999986 567766443
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=7.3e-17 Score=170.21 Aligned_cols=213 Identities=12% Similarity=0.031 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...
T Consensus 490 ~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444455544444332 233332222333334666677777776665443 33334444555566666777777777
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhh
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (583)
++...+. .+.+...+..+.....+.|++++|...+++..+. .|+...+..+..++.+.|++++|+..++++...
T Consensus 565 l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-- 638 (987)
T PRK09782 565 LQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL-- 638 (987)
T ss_pred HHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 7666552 1223333333333334457777777777777653 456667777777777777777777777777765
Q ss_pred hhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHH
Q 007970 460 VKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538 (583)
Q Consensus 460 ~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (583)
.|+. ..+..+..++...|++++|+..+++..+ ..|+.......+..++...
T Consensus 639 ----------------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~l---------- 690 (987)
T PRK09782 639 ----------------EPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRL---------- 690 (987)
T ss_pred ----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC----------
Confidence 5544 5666666777777777777777777764 3454433222223333333
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 007970 539 QDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 539 ~~~~~~~~~~~~a~~~~~~~ 558 (583)
|++++|.+.+++.
T Consensus 691 -------Gd~~eA~~~l~~A 703 (987)
T PRK09782 691 -------DDMAATQHYARLV 703 (987)
T ss_pred -------CCHHHHHHHHHHH
Confidence 6777777666554
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.5e-17 Score=164.15 Aligned_cols=499 Identities=13% Similarity=0.089 Sum_probs=331.5
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
|++..+.|.+.|--.|+ +..+..+...+.... ..-.--+.+|--+.++|...|++++|...|.+..+..
T Consensus 269 nP~~l~~LAn~fyfK~d--y~~v~~la~~ai~~t---------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKD--YERVWHLAEHAIKNT---------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred CcHHHHHHHHHHhhccc--HHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 55667777777777776 777777777666531 0001124457777788888888888888877776643
Q ss_pred CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCC----ChHHHHHHHHHHHhhhHHHH
Q 007970 89 AKPDV--LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG----DLEIAETIVQAMREGRRDVC 162 (583)
Q Consensus 89 ~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~ 162 (583)
++. ..+--|.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.....+...
T Consensus 338 --~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 338 --NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred --CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 333 334456677778888888888888877763 556667777777776654 44556666665555433222
Q ss_pred HHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007970 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242 (583)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (583)
..+-. .+..+ ..++...+..+|..+... +...+.++.+...|.+...+...|.+..|...|......
T Consensus 415 ~a~l~---laql~-e~~d~~~sL~~~~~A~d~---------L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 415 EAWLE---LAQLL-EQTDPWASLDAYGNALDI---------LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHH---HHHHH-HhcChHHHHHHHHHHHHH---------HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 21111 11111 123333334444433210 111233467788888888889999999999998887765
Q ss_pred ccCCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007970 243 EDNASHPDH------VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316 (583)
Q Consensus 243 ~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 316 (583)
-..-..++. .+-..+....-..++.+.|.+.|..+.+.. |--...|..+..+....+...+|...+..++...
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 111112222 122234445556678889999999888763 2223334444433444577888988888887544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHH
Q 007970 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFAL------------SSQPKLANKVFDEM 383 (583)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~ 383 (583)
..++..++.+...+.+...+..|.+-|....+.- ..+|..+..+|...|.+ .+..++|+++|.++
T Consensus 561 --~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 561 --SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred --cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 4455566667777888888888888666655431 23566676667665543 34568899999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhc
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 463 (583)
++ ..+.|..+-|.+..+++..|++.+|..+|.+..+.. .....+|..+..+|...|++..|++.|+...+.+.
T Consensus 639 L~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~---- 711 (1018)
T KOG2002|consen 639 LR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY---- 711 (1018)
T ss_pred Hh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 88 567888999999999999999999999999999863 33566899999999999999999999999988752
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHhhhhhhccc--chhHHHH
Q 007970 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK--YKKIYVEMHSRMFTSK--HASQARQ 539 (583)
Q Consensus 464 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~~~~~~l~~~~~~~--~~~~~~~ 539 (583)
-.-+..+...|.+++.+.|.+.+|.+.+..... ..|...+ |+. .-++.+...+. ..-+...
T Consensus 712 -----------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~--a~v~kkla~s~lr~~k~t~e 776 (1018)
T KOG2002|consen 712 -----------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNL--ALVLKKLAESILRLEKRTLE 776 (1018)
T ss_pred -----------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHH--HHHHHHHHHHHHhcccccHH
Confidence 245678999999999999999999999998875 3444333 332 22333322211 1225667
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 007970 540 DRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 540 ~~~~~~~~~~~a~~~~~~~~ 559 (583)
++....+.+++|+++|..+.
T Consensus 777 ev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 777 EVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999998874
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=6.2e-17 Score=170.75 Aligned_cols=405 Identities=12% Similarity=0.090 Sum_probs=297.6
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
+.+..-..-.+.+....|+.++|+++|....... ..+...+..+..++...|++++|.+++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4455556677788889999999999999998633 2455568889999999999999999999999874 5667788889
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
+.++...|++++|...++++.... +.+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~---------------------------------------------------P~~~~ 118 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA---------------------------------------------------PDKAN 118 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---------------------------------------------------CCCHH
Confidence 999999999999999999987632 34566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH------HH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR------IT 288 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~ 288 (583)
+..+..++...|+.++|+..++++.+. .+.+...+..+..++...+..+.|++.++.+.. .|+. ..
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~ 190 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPR----APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADA 190 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 888999999999999999999999985 344566677788888889999999999886664 2221 11
Q ss_pred HHHHHHHHH-----hcCCH---HHHHHHHHHHHhcCCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 007970 289 YNILLKGYC-----QQLQI---DKAKELLREMADDAKIEPDVV-SY----NILIDGFILIDDSAGALTFFNEMRARGIA- 354 (583)
Q Consensus 289 ~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 354 (583)
...++..+. ..+++ ++|++.++.+.+.....|+.. .+ ...+..+...|++++|+..|+.+.+.+.+
T Consensus 191 ~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 191 AAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred HHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 222233222 22234 778888888875423333321 11 11133456779999999999999987532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG--------- 423 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------- 423 (583)
|+. ....+..++...|++++|+..|+.+.+.....+ .......+..++.+.|++++|.++++.+.+..
T Consensus 271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 332 222356789999999999999999876321111 13456667778899999999999999998652
Q ss_pred --CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHH
Q 007970 424 --FYPN---VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRK 497 (583)
Q Consensus 424 --~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 497 (583)
-.|+ ...+..+...+...|++++|++.++++... .|+ ...+..++.++...|++++
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------------------~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN------------------APGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCCHHH
Confidence 1123 234556777889999999999999999876 444 5888899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 498 ALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
|++.+++... +.|+...+.......+.+. |++++|...++.+
T Consensus 412 A~~~l~~al~--l~Pd~~~l~~~~a~~al~~-----------------~~~~~A~~~~~~l 453 (765)
T PRK10049 412 AENELKKAEV--LEPRNINLEVEQAWTALDL-----------------QEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHh--hCCCChHHHHHHHHHHHHh-----------------CCHHHHHHHHHHH
Confidence 9999999985 5677654433323333333 6777777766554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=8.1e-16 Score=159.03 Aligned_cols=438 Identities=11% Similarity=0.060 Sum_probs=317.4
Q ss_pred HHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCH--HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHH
Q 007970 20 LAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT--AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97 (583)
Q Consensus 20 ~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 97 (583)
..+.|+ ++.|+..|+++.+. .|+. ..+ .++..+...|+.++|+..+++..... ........
T Consensus 44 ~~r~Gd--~~~Al~~L~qaL~~-------------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 44 RARAGD--TAPVLDYLQEESKA-------------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred HHhCCC--HHHHHHHHHHHHhh-------------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 346777 99999999999873 4543 344 88899999999999999999998311 11233333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccC
Q 007970 98 VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177 (583)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (583)
.+...+...|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++.+....++.... ...+..+..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~----l~layL~~~ 181 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY----MTLSYLNRA 181 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH----HHHHHHHHh
Confidence 34567888899999999999999986 5567888888999999999999999999998877763332 112333334
Q ss_pred CCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHH--
Q 007970 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT-- 255 (583)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-- 255 (583)
.++..+|+..+++++ ...+.+...+..+..++.+.|-...|+++..+-... ..+...-+.
T Consensus 182 ~~~~~~AL~~~ekll--------------~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~~~~~l~~ 243 (822)
T PRK14574 182 TDRNYDALQASSEAV--------------RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAEHYRQLER 243 (822)
T ss_pred cchHHHHHHHHHHHH--------------HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHHHHHHHHH
Confidence 566656999999988 334566888899999999999999998777665432 333222110
Q ss_pred HHHHHHHHcC------------ChHHHHHHHHHHHhC-CCCCCH-HHH-HH---HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007970 256 TVVSALVKAG------------SMDRARQVLAEMTRI-GVPANR-ITY-NI---LLKGYCQQLQIDKAKELLREMADDAK 317 (583)
Q Consensus 256 ~ll~~~~~~g------------~~~~a~~~~~~~~~~-~~~~~~-~~~-~~---l~~~~~~~~~~~~A~~~~~~~~~~~~ 317 (583)
..+.-..+.+ -.+.|+.-++.+... +-.|.. ..| .. .+-++...+++.++++.|+.+.. .+
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-~~ 322 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-EG 322 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-cC
Confidence 1111111111 234566666665542 111322 222 22 24467788999999999999954 55
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---
Q 007970 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-----IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV--- 389 (583)
Q Consensus 318 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 389 (583)
.+....+-..+.++|...+++++|+.+|+.+.... ..++......|.-++...+++++|..+++.+.+....
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 45455688889999999999999999999987643 1223444578888999999999999999999873110
Q ss_pred -------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhh
Q 007970 390 -------KVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 390 -------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (583)
.|+ ...+..++..+...|++.+|++.++++... -+-|......+...+...|.+.+|.+.++.+...
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-- 479 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL-- 479 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--
Confidence 122 234455677888999999999999999876 3568889999999999999999999999877754
Q ss_pred hhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007970 460 VKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519 (583)
Q Consensus 460 ~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (583)
.|+. .+....+.++...|++.+|.++.+.+.+ ..|+......
T Consensus 480 ----------------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 480 ----------------APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred ----------------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHH
Confidence 6665 7777888899999999999999999875 5677664443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=3.5e-15 Score=157.67 Aligned_cols=445 Identities=12% Similarity=0.039 Sum_probs=288.0
Q ss_pred hHHHHHH-HHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHC
Q 007970 10 VKAWSTV-VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN-LGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 10 ~~~~~~l-i~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 87 (583)
..+.... ...|.+.++ +++|+..+.++.+. .+.+......+..+|.. .++ +++..+++.
T Consensus 181 ~~vL~L~~~rlY~~l~d--w~~Ai~lL~~L~k~------------~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~---- 241 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQ--WSQADTLYNEARQQ------------NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ---- 241 (987)
T ss_pred cHHHHHHHHHHHHHHhC--HHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----
Confidence 4333333 666766666 77777777777663 23344445556566665 355 555555442
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-cchhHH------------------------------HHHHH
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT-LCMTTF------------------------------QSLVA 136 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~------------------------------~~l~~ 136 (583)
.++-+...+..+...+.+.|+.++|.++++++...... |...++ ..++.
T Consensus 242 ~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 242 GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLP 321 (987)
T ss_pred hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHH
Confidence 22245666667777777777777777766665432111 111111 11234
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHH---------------------------HHHHHhhhhccccccCCCCCCCcHHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDV---------------------------CKIIRELDLEDYSSENEGDDDDDDEVFE 189 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 189 (583)
.+.+.++++.++++.. .....+-. +.....+..........|+..+|.++|+
T Consensus 322 ~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 322 VLLKEGQYDAAQKLLA-TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred HHHhccHHHHHHHHhc-CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4444555554444422 11000000 0000011111222335677788888888
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHH----------------------HHHHHhccc
Q 007970 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR---VSDTVRM----------------------LGAMRRQED 244 (583)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~~~~~~~ 244 (583)
...+.. ..-..+....+.++..|.+.+. ...+..+ +......-
T Consensus 401 ~~~~~~-----------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al- 468 (987)
T PRK09782 401 QRYPFQ-----------GDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL- 468 (987)
T ss_pred HhcCCC-----------cccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc-
Confidence 776421 1112345555677787777766 2222222 22222211
Q ss_pred CCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH
Q 007970 245 NASHP--DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322 (583)
Q Consensus 245 ~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 322 (583)
...++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++... +|+.
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~ 542 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSN 542 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCc
Confidence 01233 56677777777766 88999999888887653 56555445566667899999999999998543 4555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 402 (583)
..+..+..++.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...|..+..+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~ 618 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATI 618 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 566777788899999999999999998864 333333444444455669999999999999863 4678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-EL 481 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~ 481 (583)
+.+.|++++|+..+++..... +.+...+..+..++...|++++|+..++++.+. .|+. ..
T Consensus 619 l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------------------~P~~~~a 679 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG------------------LPDDPAL 679 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHH
Confidence 999999999999999999863 446677888888999999999999999999976 6654 88
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
+..+..++...|++++|+..+++..+ +.|+....
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i 713 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVID--DIDNQALI 713 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchh
Confidence 89999999999999999999999985 55665433
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.9e-15 Score=148.30 Aligned_cols=444 Identities=14% Similarity=0.084 Sum_probs=310.6
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcch--hH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP--DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM--TT 130 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 130 (583)
+-+++..+.|.+.|.-.|++..++.+...+......- -...|-.+.++|-..|+++.|...|-+..+.. ++. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 4467788889999999999999999998887753211 13346678888999999999999987777654 333 34
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCC----CCCCCcHHHHHhhcCCCCCCCCCCCCCC
Q 007970 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE----GDDDDDDEVFEKLLPNSINPSSEPPLLP 206 (583)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 206 (583)
+..|.+.+.+.|+++.+...|+.+....|+.......+. ..|... -..+.|..+..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG---~Lya~~~~~~~~~d~a~~~l~K~~-------------- 407 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG---CLYAHSAKKQEKRDKASNVLGKVL-------------- 407 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH---hHHHhhhhhhHHHHHHHHHHHHHH--------------
Confidence 456788899999999999999998887777666554443 333333 23345555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-ccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CC
Q 007970 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI---GV 282 (583)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~ 282 (583)
...+.|...|-.+...+....-+.. +.+|..+... ...+..+.+...|.+.......|+++.|...|...... ..
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 2235678888888888776665554 6666554421 00123366788899999999999999999999888754 11
Q ss_pred C------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007970 283 P------ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV-SYNILIDGFILIDDSAGALTFFNEMRARGIAP 355 (583)
Q Consensus 283 ~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 355 (583)
. ++..+--.+..++-..++.+.|.+.|..+++. .|+-+ .|..+.......+...+|...+++..... ..
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 2 22223344666777788999999999999875 45533 34444333334577788999998887753 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCC
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR------------MGLVEEAKRIIERMKENG 423 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~g 423 (583)
++..+..+...+.+...+..|.+-|..+.+.....+|..+.-+|...|.+ .+..++|+++|.+.++.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~- 641 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN- 641 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-
Confidence 55556666667777788888888777766654445677777677665543 24578899999999886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
.+-|...-|-+.-+++..|++.+|..+|.+..+.. .-...+|..+..+|...|+|-.|+++|+
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-----------------~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-----------------SDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-----------------hhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 34578888888889999999999999999998862 3344678889999999999999999999
Q ss_pred HHHH-cCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 504 CMEE-HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 504 ~~~~-~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
.... .....+... +..|+|+++.. |.+.+|.+.+...
T Consensus 705 ~~lkkf~~~~~~~v-----l~~Lara~y~~-------------~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEV-----LHYLARAWYEA-------------GKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHhcccCCHHH-----HHHHHHHHHHh-------------hhHHHHHHHHHHH
Confidence 9754 333333433 33445543333 7888888776443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=5.2e-14 Score=145.79 Aligned_cols=402 Identities=14% Similarity=0.109 Sum_probs=275.2
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV--LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
.+.+.-.-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... .+........+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHH
Confidence 34444445556679999999999999999864 443 234 8888888999999999999998832 12333444445
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
...+...|++++|.++|+++.+.. +.+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d---------------------------------------------------P~n~~ 137 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD---------------------------------------------------PTNPD 137 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC---------------------------------------------------CCCHH
Confidence 678999999999999999998743 34567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
.+..++..+...++.++|++.+..+... .|+...+..++..+...++..+|++.++++.+.. |.+...+..++.
T Consensus 138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~ 211 (822)
T PRK14574 138 LISGMIMTQADAGRGGVVLKQATELAER-----DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLE 211 (822)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhccc-----CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 7778889999999999999999998874 5565556555445545666666999999999875 567888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHH---------hcCCH---HHHHHHHHHHHHC-CCCCC-HH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSY--NILIDGFI---------LIDDS---AGALTFFNEMRAR-GIAPT-KI 358 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~---------~~~~~---~~a~~~~~~m~~~-~~~p~-~~ 358 (583)
++.+.|-...|.++..+-.. -+.+....+ ...+.-.+ ..+++ +.|+.-++.+... +..|. ..
T Consensus 212 ~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~ 289 (822)
T PRK14574 212 ILQRNRIVEPALRLAKENPN--LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQA 289 (822)
T ss_pred HHHHcCCcHHHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccch
Confidence 99999999999988765431 112221111 00000111 11222 3455555555542 12232 22
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHH
Q 007970 359 SY----TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG-----FYPNVA 429 (583)
Q Consensus 359 ~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~ 429 (583)
.| .-.+-++...+++.++++.|+.+... +.+....+-..+..+|...+++++|..+|..+.... ..++..
T Consensus 290 ~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 290 DYQRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 22 23344678889999999999999864 555456678899999999999999999999997542 233444
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
....|..++...+++++|..+++.+.+... - .+.........-.||- ..+..++..+...|++.+|++.++++..
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p-~--~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~- 444 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTP-Y--QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS- 444 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCC-c--EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 467889999999999999999999987421 0 0110010111224554 4556667888999999999999999975
Q ss_pred CCCCCHHHHHHHHHHhhhh
Q 007970 509 GIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 509 ~~~p~~~~~~~~~~~~l~~ 527 (583)
..|...-+.....+++.+
T Consensus 445 -~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 445 -TAPANQNLRIALASIYLA 462 (822)
T ss_pred -hCCCCHHHHHHHHHHHHh
Confidence 345544433333555444
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=3.7e-13 Score=127.84 Aligned_cols=480 Identities=14% Similarity=0.122 Sum_probs=298.6
Q ss_pred hhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 28 PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 107 (583)
.++|.-++.+..+. ++.+...|. ++++..-++.|.++++...+. +..+...|.+....=-.+|
T Consensus 392 ~~darilL~rAvec------------cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 392 PEDARILLERAVEC------------CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG 454 (913)
T ss_pred hHHHHHHHHHHHHh------------ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC
Confidence 44466677776664 444555554 444556667777777777663 4456666766666666677
Q ss_pred ChhHHHHHHHH----HHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCC
Q 007970 108 RKHLLVFVLER----ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183 (583)
Q Consensus 108 ~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (583)
+.+....+..+ +...|+..+...|..=...|-..|..-.+..+...+...+.+..+....+.-.+....+.+.++-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHH
Confidence 77776666543 33456666666666666666666766666666666655544444444444444445556666666
Q ss_pred cHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 007970 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263 (583)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (583)
|+.+|...+ +.++.+...|...+..--..|..++...+|++.... .+-....|.....-+-.
T Consensus 535 arAVya~al--------------qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~----~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 535 ARAVYAHAL--------------QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ----CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHHHHHHHH--------------hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHh
Confidence 777777666 445666677777776666677777777777777664 44445556656666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
.|++..|..++..+.+.. +.+..+|-.-+..-..+..++.|..+|.+... ..|+...|.--+..---.+..++|.+
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 677777777777777654 44666677777777777777777777776633 24555555555555555667777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
++++..+. .+--...|..+.+.+-+.++.+.|...|..-.+ ..+..+..|-.|...--+.|.+-.|..++++..-.+
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 77766664 232345566666677777777777776665554 345555666666666666677777777777766543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhcc----ccCCC-------CCC--CCCCCCHHHHHHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG----VNADS-------DLP--PPLKPDEELLDALADICV 490 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~-------~~~--~~~~p~~~~~~~l~~~~~ 490 (583)
+-+...|...++.=.+.|..+.|..+..++.+.+...+.- +.... .+. .....|..++..+...+.
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 3356666667776667777777776666666654221100 00000 000 022556777888888899
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC-CCCCC-Ccccc
Q 007970 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL-PNSYY-GSEWR 568 (583)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~ 568 (583)
...+++.|.+.|..... +.||....=+.+.....+. |.-++-.+++.+- ...|. |..|.
T Consensus 829 ~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~h-----------------G~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRH-----------------GTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHh-----------------CCHHHHHHHHHHHhccCCCCCcHHH
Confidence 99999999999999984 5677655444456666665 6556666666555 33333 66665
Q ss_pred c
Q 007970 569 L 569 (583)
Q Consensus 569 ~ 569 (583)
.
T Consensus 890 a 890 (913)
T KOG0495|consen 890 A 890 (913)
T ss_pred H
Confidence 3
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=5.5e-13 Score=131.60 Aligned_cols=470 Identities=13% Similarity=0.105 Sum_probs=273.0
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
....-.....+...|+ .++|..++.++++. .|.+...|.+|..+|-..|+.+++...+-.+-..+.
T Consensus 139 l~~ll~eAN~lfarg~--~eeA~~i~~EvIkq------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p 204 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGD--LEEAEEILMEVIKQ------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP 204 (895)
T ss_pred HHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 3333333344444477 99999999999885 566788999999999999999999988877766543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHH--HHHHh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC--KIIRE 167 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 167 (583)
.|...|..+.....+.|++.+|.-+|.+.++.. +++...+-.-...|-+.|+...|..-|..+....|.+. .....
T Consensus 205 -~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 205 -KDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred -CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 466889999998899999999999999999986 66666666678889999999999999998887655111 11122
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc---
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED--- 244 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 244 (583)
....+..+...+..+.|.+.++..+.. ..-..+...++.++..|.+...++.|............
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~------------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSK------------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhh------------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 222223333344446666666666510 12334455677777777777777777777766665210
Q ss_pred ---------------------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007970 245 ---------------------NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--VPANRITYNILLKGYCQQLQ 301 (583)
Q Consensus 245 ---------------------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 301 (583)
....++...+ -+.-++.+....+....+...+.+.. +.-+...|.-+..+|...|+
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 0111111111 11222233344444444444444444 23345566667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 381 (583)
+.+|+.+|..+....+ ..+...|-.+..+|...|.++.|.+.|+...... +-+...-..|...+.+.|++++|.+.+.
T Consensus 430 ~~~Al~~l~~i~~~~~-~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 430 YKEALRLLSPITNREG-YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHHHHHHHHhcCcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 7777777777755322 2345667777777777777777777777776652 2233444455556667777777777776
Q ss_pred HHhc-------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 382 EMLR-------DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG-----FYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 382 ~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.+.. .....|+..........+.+.|+.++=+.+..+|+... +.|+..--.....+-...+...+-..
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~ 587 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLK 587 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHH
Confidence 6432 11234444444555566666777666555555554321 11111110111111001111111111
Q ss_pred HHHHHHHHhhh---hhccccC----CCCCCCCCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Q 007970 450 LWKEIKERCEV---KKEGVNA----DSDLPPPLKPDE--ELLDALADICVRAAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 450 ~~~~~~~~~~~---~~~~~~~----~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 510 (583)
....+...... ...+... .....+++..+. ..+.-++.++.+.+++++|+.+...+.+...
T Consensus 588 ~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~ 657 (895)
T KOG2076|consen 588 QIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI 657 (895)
T ss_pred HHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 11111111000 0000000 000111333333 4667778899999999999999999976433
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=1.5e-12 Score=123.75 Aligned_cols=473 Identities=11% Similarity=0.072 Sum_probs=353.3
Q ss_pred hhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 28 PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 107 (583)
...-.+++++.++. +|.++..|-..+ ...+.++|.-++....+.- ..+.. |.-++++..
T Consensus 362 ~~~K~RVlRKALe~------------iP~sv~LWKaAV----elE~~~darilL~rAvecc-p~s~d----LwlAlarLe 420 (913)
T KOG0495|consen 362 TKNKKRVLRKALEH------------IPRSVRLWKAAV----ELEEPEDARILLERAVECC-PQSMD----LWLALARLE 420 (913)
T ss_pred HHHHHHHHHHHHHh------------CCchHHHHHHHH----hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHH
Confidence 34445677777775 666777887554 4567777999999998742 22333 344567777
Q ss_pred ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhh------HHHHHHHHhhhhccccccCCCCC
Q 007970 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------RDVCKIIRELDLEDYSSENEGDD 181 (583)
Q Consensus 108 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 181 (583)
-++.|..++....+. ++.+..+|.+-...--..|+.+...+++++-...- .+...|+.. +......|..
T Consensus 421 tYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e----Ae~~e~agsv 495 (913)
T KOG0495|consen 421 TYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE----AEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH----HHHHhhcCCh
Confidence 899999999999886 68899999998888888999999999887543321 122233322 2233455777
Q ss_pred CCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 007970 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261 (583)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (583)
-.+..+...++.-++.- ..-..+|..-...|.+.+.++-|..+|....+. .+-+...|......-
T Consensus 496 ~TcQAIi~avigigvEe-----------ed~~~tw~~da~~~~k~~~~~carAVya~alqv----fp~k~slWlra~~~e 560 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEE-----------EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV----FPCKKSLWLRAAMFE 560 (913)
T ss_pred hhHHHHHHHHHhhcccc-----------chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhHHHHHHHHHH
Confidence 77788888776333221 233678999999999999999999999999885 566778888888877
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
-..|..+....+|+.+... ++-....|......+-..|+...|..++..+.+.. +.+...|..-+..-..+.+++.|
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHH
Confidence 8889999999999999986 35667788888888999999999999999998643 34677888888888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
..+|.+.... .|+...|.--+......++.++|.+++++..+ .++.-...|..+.+.+-+.++.+.|.+.|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999998874 67888888777777788999999999999998 4555567899999999999999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHH
Q 007970 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALE 500 (583)
Q Consensus 422 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 500 (583)
. ++-.+..|..|...=-+.|..-+|..++++..-+ .|+ ...|...|++=.+.|..+.|..
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk------------------NPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK------------------NPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc------------------CCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 4 3444556777777777889999999999999876 555 4889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHH------------HHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC-CCCC-CCcc
Q 007970 501 IVACMEEHGIPPNKTKYKKI------------YVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL-PNSY-YGSE 566 (583)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~ 566 (583)
++.+.++. .+.+-..|..- .++.+.++-.-+|........--...++++|.++|.+. .-.| +|.+
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 98887641 22222233222 24555555444433333333334456778888888665 2233 3666
Q ss_pred cc
Q 007970 567 WR 568 (583)
Q Consensus 567 ~~ 568 (583)
|-
T Consensus 854 wa 855 (913)
T KOG0495|consen 854 WA 855 (913)
T ss_pred HH
Confidence 63
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2.2e-14 Score=130.23 Aligned_cols=456 Identities=12% Similarity=0.126 Sum_probs=254.2
Q ss_pred HHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHH-HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC---
Q 007970 17 VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA-YNAVLNACANLGKPKKFLQLFDQMHEFGAKPD--- 92 (583)
Q Consensus 17 i~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 92 (583)
.+-|..... +.+|+..|+.+.+. ..-|+... --.+.+.+.+..++.+|+++|+.....-+..+
T Consensus 208 aqqy~~ndm--~~ealntyeiivkn-----------kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ 274 (840)
T KOG2003|consen 208 AQQYEANDM--TAEALNTYEIIVKN-----------KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDM 274 (840)
T ss_pred HHHhhhhHH--HHHHhhhhhhhhcc-----------cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhh
Confidence 344444444 66777777666552 12222221 12344566677777777777777665321111
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHH---------
Q 007970 93 -VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC--------- 162 (583)
Q Consensus 93 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 162 (583)
....+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|........
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 223444444566777777777777777665 35655555556666667777777777777754211000
Q ss_pred -----HHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH-------------HH--------
Q 007970 163 -----KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR-------------IY-------- 216 (583)
Q Consensus 163 -----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-------- 216 (583)
-....+.....-.....+-..|.+..-... .++...+.|+-. .+
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~----------kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAA----------KIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHH----------HHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 000000000000000011111111111100 000000011100 00
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHH-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA-LVK-AGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
-.-..-|.+.|+++.|.++++-+.++. .+.-...-+.|-.. |.+ -.++..|.+.-+..+... .-+....+.-..
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kd---nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn 498 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKD---NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGN 498 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhcc---chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCc
Confidence 011224455666666666665554431 11111111111111 111 123444444444443322 222222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 374 (583)
.....|++++|.+.|++.+.. . ...+...-.+.-.+...|+.++|++.|-++..- +..+..++..+...|....++.
T Consensus 499 ~~f~ngd~dka~~~ykeal~n-d-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNN-D-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcC-c-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 334568899999999888742 1 111222222333466788999999999887664 3457788888888898889999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
+|++++..... -++.|+...+-|...|-+.|+-..|.+..-+--.. ++-+..+...|...|....-.++++.+|+++
T Consensus 576 qaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999877755 67788888999999999999999998877665443 5567888888888888888899999999887
Q ss_pred HHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALAD-ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
.- +.|+..-|..++- ++.+.|++..|..+++...+ .+ |........++.+.+.
T Consensus 653 al------------------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kf-pedldclkflvri~~d 706 (840)
T KOG2003|consen 653 AL------------------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KF-PEDLDCLKFLVRIAGD 706 (840)
T ss_pred Hh------------------cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hC-ccchHHHHHHHHHhcc
Confidence 63 5899988887775 55678999999999998864 23 4333333333554444
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4.9e-14 Score=127.96 Aligned_cols=405 Identities=13% Similarity=0.083 Sum_probs=255.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHH-HHHHHHHcCCChHHHHHHHHHHHhhhHHHHH--HHHhhhhccccc
Q 007970 99 MIKLCARASRKHLLVFVLERILEMGITLCMTTFQ-SLVAAYVGFGDLEIAETIVQAMREGRRDVCK--IIRELDLEDYSS 175 (583)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 175 (583)
|..-|..+....+|+..|+-+++...-|+...+. .+.+.+.+..++.+|++.++.....-|.+.. .+..+...+..+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4444555566677777777777766666654433 3556677777778888777766654443322 334455566777
Q ss_pred cCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc---------CC
Q 007970 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED---------NA 246 (583)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~ 246 (583)
.+.|.++.|+..|+.++. ..|+..+-..|+-++..-|+-+...+.|.+|..... ..
T Consensus 287 iq~gqy~dainsfdh~m~---------------~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCME---------------EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred EecccchhhHhhHHHHHH---------------hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 778888888888887762 246666656666666677777777777777765420 01
Q ss_pred CCCCHHHHHHHH-----HHHHHcC--ChHHHHHHHHHHHhCCCCCCHH-----HH----------------HHHHHHHHh
Q 007970 247 SHPDHVTYTTVV-----SALVKAG--SMDRARQVLAEMTRIGVPANRI-----TY----------------NILLKGYCQ 298 (583)
Q Consensus 247 ~~~~~~~~~~ll-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-----~~----------------~~l~~~~~~ 298 (583)
..|+....+..| ...-+.+ +.++++-.-..++.--+.|+-. +. ..-...|.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 112222222111 1111111 1112211111111111111100 00 001223556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHH------------------------------HHH-----HHHHHHhcCCHHHHHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVS------------------------------YNI-----LIDGFILIDDSAGALT 343 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~------------------------------~~~-----li~~~~~~~~~~~a~~ 343 (583)
.|+++.|.++++-+.++.....+... |+. -.......|++++|.+
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 66666666666555332111111100 111 0111123688999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
.|++.....-.-....|+. .-.+-..|+.++|++.|-++.. -+..+......+...|-...+...|++++-+....
T Consensus 512 ~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 9999876532222222322 2245678999999999988754 33456777778888899999999999999888775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
++.|+..+..|...|-+.|+..+|.+.+-.--.. ++-+..+..-|..-|....-+++|+.+|+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-----------------fp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-----------------FPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-----------------cCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6778899999999999999999999887655443 36677888889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 504 CMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 504 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
+.. -+.|+..-|..++..+++|. |.+.+|+++++.+
T Consensus 651 kaa--liqp~~~kwqlmiasc~rrs-----------------gnyqka~d~yk~~ 686 (840)
T KOG2003|consen 651 KAA--LIQPNQSKWQLMIASCFRRS-----------------GNYQKAFDLYKDI 686 (840)
T ss_pred HHH--hcCccHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHH
Confidence 985 37999999999999999998 9999999998776
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.8e-12 Score=115.95 Aligned_cols=370 Identities=11% Similarity=0.135 Sum_probs=252.7
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
+-+..+|..+|.++|+... .+.|..++.+..+. ....+..+||.+|.+-+-... .+++.+|.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~--~ERA~~L~kE~~~~-----------k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis 266 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSS--LERARELYKEHRAA-----------KGKVYREAFNGLIGASSYSVG----KKLVAEMIS 266 (625)
T ss_pred CCCchhHHHHHHHHHHHHh--HHHHHHHHHHHHHh-----------hheeeHHhhhhhhhHHHhhcc----HHHHHHHHH
Confidence 3467799999999999977 99999999887763 356789999999988654433 889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHH-HHHHHHHHHhhhHHH
Q 007970 87 FGAKPDVLTYNVMIKLCARASRKHLL----VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI-AETIVQAMREGRRDV 161 (583)
Q Consensus 87 ~~~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~ 161 (583)
..+.||..|+|+++.+.++.|+++.| ++++.+|++.|+.|...+|..+|..+++.++..+ |...+..+...
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~---- 342 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS---- 342 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh----
Confidence 99999999999999999999988764 5788899999999999999999999999888765 22222222210
Q ss_pred HHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007970 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (583)
+.+. .+.-..+.+..-|...+..|....+.+-|.++...+..
T Consensus 343 --------ltGK------------------------------~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 343 --------LTGK------------------------------TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred --------hccC------------------------------cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 0000 00111134566777888888899999999888777654
Q ss_pred cccCC-CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007970 242 QEDNA-SHPD---HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317 (583)
Q Consensus 242 ~~~~~-~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 317 (583)
..... +.|+ ..-|..+....+.....+.-...|+.|+-.-+-|+..+...++++..-.+.++-.-+++..+.. .|
T Consensus 385 g~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~g 463 (625)
T KOG4422|consen 385 GDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YG 463 (625)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hh
Confidence 32111 2222 2345667777788888889999999998877778888888888888888888888888877743 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHH-HHHHHhcCCCCCCCH
Q 007970 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI---SYTTLMKAFALSSQPKLANK-VFDEMLRDPRVKVDI 393 (583)
Q Consensus 318 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~ 393 (583)
.+++. +--++++..|......|+.. -+.....-|+. ++.++.+ .-.++.+ .....
T Consensus 464 -----ht~r~-----------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~---~~~~~ 522 (625)
T KOG4422|consen 464 -----HTFRS-----------DLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRA---QDWPA 522 (625)
T ss_pred -----hhhhH-----------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHh---ccCCh
Confidence 11211 22234444555544444322 23333222211 2222222 2222322 23455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGF----YPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+.+...+.+.|+.++|.++|..+.+.+- .|.......++..-...+.+..|+..++-+...
T Consensus 523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 5677777888999999999999999865442 233344445666667778888888888888654
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.7e-13 Score=122.43 Aligned_cols=326 Identities=17% Similarity=0.253 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH--HHcCCChHHHH-HHHHHHHhhhHHHHHHHHhhh
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA--YVGFGDLEIAE-TIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~ 169 (583)
+.+=|.|++ +...|.+.++.-+|+.|...|++.++.+-..|+.. |....++--|+ +-|-.|...+.+....
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s----- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS----- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc-----
Confidence 445566666 45678889999999999999988887776666543 33333433222 2222333222111100
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 249 (583)
-+.|.+ |. ++-+.. +.+..++..||.+.|+--..+.|.+++++.... ..+.
T Consensus 190 ------WK~G~v--Ad-L~~E~~-----------------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~---k~kv 240 (625)
T KOG4422|consen 190 ------WKSGAV--AD-LLFETL-----------------PKTDETVSIMIAGLCKFSSLERARELYKEHRAA---KGKV 240 (625)
T ss_pred ------cccccH--HH-HHHhhc-----------------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh---hhee
Confidence 011221 22 333333 578899999999999999999999999998876 3778
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHHhcCCCCCCHHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK----ELLREMADDAKIEPDVVSY 325 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----~~~~~~~~~~~~~~~~~~~ 325 (583)
+..+||.+|.+..-.. ..+++.+|....+.||..|+|+++++..+.|+++.|. +++.+| ++-|+.|...+|
T Consensus 241 ~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~Em-KeiGVePsLsSy 315 (625)
T KOG4422|consen 241 YREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEM-KEIGVEPSLSSY 315 (625)
T ss_pred eHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhH
Confidence 8999999998765433 3789999999999999999999999999999987665 556666 558999999999
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCC-
Q 007970 326 NILIDGFILIDDSAG-ALTFFNEMRA----RGIA----PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR---VKVD- 392 (583)
Q Consensus 326 ~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~- 392 (583)
..+|..+.+-++..+ +..++.++.. ...+ -+...|...+..|.+..+.+.|.++..-+....+ +.|+
T Consensus 316 h~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~ 395 (625)
T KOG4422|consen 316 HLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ 395 (625)
T ss_pred HHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH
Confidence 999999998888754 4444444433 2222 2456678888899999999999998877655322 1222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 393 --IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 393 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
..-|..+..+.|+....+.-...|+.|.-.-+-|+..+...++++..-.|.++-.-++|..++..+
T Consensus 396 ~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 396 HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 234667788888999999999999999877788999999999999999999988888888877653
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.3e-12 Score=129.07 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----H
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR----I 287 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 287 (583)
|..-|..+.....+.|.++.|.-.|.+..+. .+++...+---...|-+.|+...|...|.++.....+.+. .
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~----~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQA----NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 3444555555555555555555555555543 2333333333344444555555555555555543211111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR---------------- 351 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------- 351 (583)
..-..++.+...++-+.|.+.++......+-..+...++.++..|.+...++.|......+...
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 1112233444444445555555544442222333344445555555555555555544444331
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007970 352 -----------GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR--VKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418 (583)
Q Consensus 352 -----------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (583)
+..++...+ -++-++.+....+....+...+.+. . ..-+...|.-+..+|.+.|++.+|+++|..
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 112222221 1122233334444444444444432 2 233456677777888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHH
Q 007970 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRK 497 (583)
Q Consensus 419 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 497 (583)
+...-..-+...|-.+..+|...|.+++|++.|++++.. .|+. .....|...+.+.|+.++
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~------------------~p~~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL------------------APDNLDARITLASLYQQLGNHEK 501 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc------------------CCCchhhhhhHHHHHHhcCCHHH
Confidence 776533345667777788888888888888888887764 5554 666677777778888888
Q ss_pred HHHHHHHH
Q 007970 498 ALEIVACM 505 (583)
Q Consensus 498 A~~~~~~~ 505 (583)
|.+.+..+
T Consensus 502 alEtL~~~ 509 (895)
T KOG2076|consen 502 ALETLEQI 509 (895)
T ss_pred HHHHHhcc
Confidence 88887775
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.7e-10 Score=104.73 Aligned_cols=485 Identities=11% Similarity=0.071 Sum_probs=334.5
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
..|-...+-=-..++ +..|..+|+..+.- -..+...|-.-+.+=.++.....|..+|+.....-+.
T Consensus 74 ~~WikYaqwEesq~e--~~RARSv~ERALdv------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKE--IQRARSVFERALDV------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHhHHH--HHHHHHHHHHHHhc------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 344444443344455 88888888888762 2345667777788888888888888888888764322
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 007970 91 PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 170 (583)
.| ..|--.+.+=-..|+...|.++|++-.+- .|+...|.+.|+.-.+...++.|..+++...--.|++..|+.-.
T Consensus 140 Vd-qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikya-- 214 (677)
T KOG1915|consen 140 VD-QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYA-- 214 (677)
T ss_pred HH-HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHH--
Confidence 22 23444444455678888888888887774 68888888888888888888888888888877667776665332
Q ss_pred ccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC
Q 007970 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250 (583)
Q Consensus 171 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 250 (583)
.--.+.|....+..+|+..+.... ...-+...+.++...=.++..++.|.-+|+-.... ++.+
T Consensus 215 --rFE~k~g~~~~aR~VyerAie~~~-----------~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~----~pk~ 277 (677)
T KOG1915|consen 215 --RFEEKHGNVALARSVYERAIEFLG-----------DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH----IPKG 277 (677)
T ss_pred --HHHHhcCcHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcc
Confidence 223356777778888887652100 00123345666666666788899999999988886 4433
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007970 251 --HVTYTTVVSALVKAGSMDRARQV--------LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320 (583)
Q Consensus 251 --~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 320 (583)
...|......=-+-|+....... ++.+++.+ +.|-.+|--.++.-...|+.+...++|++.+ .+++|
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp 354 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPP 354 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCc
Confidence 34454444444445654433332 34444443 6677888888888888999999999999998 45556
Q ss_pred CHH--HHHHHHH-----HH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHhcC
Q 007970 321 DVV--SYNILID-----GF---ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA----FALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 321 ~~~--~~~~li~-----~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~ 386 (583)
-.. .|...|. ++ ....+.+.+.++|+...+. ++-..+||.-+--. ..++.+...|.+++...+
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 332 2222221 11 3578899999999999884 45456666544333 446788999999998886
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhcccc
Q 007970 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466 (583)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (583)
|.-|...++...|..-.+.+++|.+..++++.++.+ +-+..+|......=...|+.+.|..+|.-+++..
T Consensus 432 -G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp-------- 501 (677)
T KOG1915|consen 432 -GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQP-------- 501 (677)
T ss_pred -ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--------
Confidence 567889999999999999999999999999999864 3467788888887788999999999999998752
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchh--------HHH
Q 007970 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS--------QAR 538 (583)
Q Consensus 467 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~--------~~~ 538 (583)
.+......+.+.|+.=...|.++.|..+++.+++. .+-...|.+. ...-..+ +.+.. ...
T Consensus 502 -------~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisF-A~fe~s~--~~~~~~~~~~~~e~~~ 569 (677)
T KOG1915|consen 502 -------ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISF-AKFEASA--SEGQEDEDLAELEITD 569 (677)
T ss_pred -------ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhH-HHHhccc--cccccccchhhhhcch
Confidence 23334567788888888999999999999999863 2333355544 3322211 01000 112
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 007970 539 QDRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 539 ~~~~~~~~~~~~a~~~~~~~~ 559 (583)
..+.++|.-+++|..+++...
T Consensus 570 ~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 570 ENIKRARKIFERANTYLKEST 590 (677)
T ss_pred hHHHHHHHHHHHHHHHHHhcC
Confidence 367778888899988887664
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.4e-11 Score=112.87 Aligned_cols=371 Identities=11% Similarity=0.085 Sum_probs=246.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 007970 92 DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171 (583)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 171 (583)
+...|--..+-=..++++..|..+|++.+..+ ..+...|-.-+.+-.+...+..|..+++.....-|.+..++..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~-- 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI-- 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH--
Confidence 44445444455556788899999999999876 567888888888899999999999999999888777777665543
Q ss_pred cccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH
Q 007970 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251 (583)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 251 (583)
+.-...|+...|.++|++.+ ...|+..+|++.|..=.+-+.++.|..+++...- +.|+.
T Consensus 149 -ymEE~LgNi~gaRqiferW~---------------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----~HP~v 207 (677)
T KOG1915|consen 149 -YMEEMLGNIAGARQIFERWM---------------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----VHPKV 207 (677)
T ss_pred -HHHHHhcccHHHHHHHHHHH---------------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----ecccH
Confidence 23345799999999999987 4589999999999999999999999999999985 67999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRI-GV-PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 329 (583)
.+|.--...=.+.|....+..+|+.+.+. |- ..+...+.++...-.++..++.|.-+|+-.++.-........|..+.
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 99999888888999999999999988753 21 12334555555555567788888888887765322112234454444
Q ss_pred HHHHhcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH--HHHHHH
Q 007970 330 DGFILIDDSAGALTF--------FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI--VAWNML 399 (583)
Q Consensus 330 ~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 399 (583)
..--+-|+.....+. |+.+...+ +-|..+|-..++.....|+.+...++|++.+. +++|-. ..|...
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRY 364 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHH
Confidence 433344554433332 33334332 34555666666666666777777777777765 455432 122222
Q ss_pred HHH--------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHhHHHHHHHHHHHHhhhhhccccC
Q 007970 400 VEG--------YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI----SLARKPGEALLLWKEIKERCEVKKEGVNA 467 (583)
Q Consensus 400 i~~--------~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 467 (583)
|.. -....+.+.+.++|+..++. ++....||.-+--.| .++.+...|.+++..++
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI------------ 431 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI------------ 431 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh------------
Confidence 211 12345666666666666653 333444444333322 33455666666666555
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 468 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
|.-|...+|...|..=.+.+.++...+++++..+.
T Consensus 432 ------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 432 ------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred ------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33566666666666666666666666666666543
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.5e-12 Score=126.78 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=215.8
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN--ILLKGYCQQLQID 303 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 303 (583)
.|+++.|.+.+...... .+-....|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 69999999888876553 1112333444455668899999999999999875 45543332 3467889999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHH
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK-------ISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a 376 (583)
.|...++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+..
T Consensus 171 ~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 171 AARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999997543 456788889999999999999999999999998655322 1333344444445566777
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
.++++.+.+ ..+.++.....+...+...|+.++|.+++.+..+. .|+.... ++.+....++++++++.++...+
T Consensus 249 ~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 249 KRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 778877765 34568888999999999999999999999999874 5666333 23334466999999999999998
Q ss_pred HhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchh
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~ 535 (583)
. .|+. ..+.++...|.+.|++++|.+.|+...+ ..|+...+..+ ..++...
T Consensus 323 ~------------------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~L-a~~~~~~------- 374 (398)
T PRK10747 323 Q------------------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWL-ADALDRL------- 374 (398)
T ss_pred h------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHH-HHHHHHc-------
Confidence 7 6665 6788999999999999999999999985 57998887655 7777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 007970 536 QARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 536 ~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
|+.++|.+++++.
T Consensus 375 ----------g~~~~A~~~~~~~ 387 (398)
T PRK10747 375 ----------HKPEEAAAMRRDG 387 (398)
T ss_pred ----------CCHHHHHHHHHHH
Confidence 8889998888654
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=4.1e-15 Score=138.45 Aligned_cols=259 Identities=17% Similarity=0.152 Sum_probs=76.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
.+...+.+.|++++|++++...... ..+| +...|..+...+...++++.|.+.++.+...+ +.+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~---~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK---IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc-ccccccccccccc-
Confidence 4566666777777777776544332 1122 33334444445555666667777766666554 2244455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKL 375 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~ 375 (583)
...+++++|.+++....+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666555332 2344455555566666666666666666654422 23345555556666666666666
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (583)
|...+++..+ ..|.|......++..+...|+.+++.+++....+.. +.|+..+..+..++...|++++|+.+|++..
T Consensus 165 A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 165 ALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 6666666655 223345556666666666666666666666555431 3344455566666666666666666666665
Q ss_pred HHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 456 ERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+. .| |..+...+++++...|+.++|.++.+..
T Consensus 242 ~~------------------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 242 KL------------------NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HH------------------STT-HHHHHHHHHHHT---------------
T ss_pred cc------------------ccccccccccccccccccccccccccccccc
Confidence 54 33 4455556666666666666666666554
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3e-15 Score=139.35 Aligned_cols=253 Identities=17% Similarity=0.153 Sum_probs=78.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 256 TVVSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 256 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
.+...+.+.|++++|+++++...... .+.+...+..+...+...++++.|...++++.... +-+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 34555666677777777775433322 23344455555555666667777777776665422 1233445555554 56
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (583)
.+++++|.+++....+. .++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66677777666655443 2344555666666666677777777766665433344566666666666777777777777
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 007970 415 IIERMKENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493 (583)
Q Consensus 415 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 493 (583)
.+++.++. .| |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----------------PDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------------------HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----------------cCHHHHHHHHHHHhcccc
Confidence 77776664 33 35566666666666777776666666665541 223345556666677777
Q ss_pred hHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhhhhhcccchh
Q 007970 494 FFRKALEIVACMEE-HGIPPNKTKYKKIYVEMHSRMFTSKHAS 535 (583)
Q Consensus 494 ~~~~A~~~~~~~~~-~~~~p~~~~~~~~~~~~l~~~~~~~~~~ 535 (583)
+.++|+.++++..+ ..- ...+...+.+++........+.
T Consensus 229 ~~~~Al~~~~~~~~~~p~---d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPD---DPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT---------
T ss_pred cccccccccccccccccc---cccccccccccccccccccccc
Confidence 77777777777643 522 2222223355555544444333
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=5.9e-12 Score=122.72 Aligned_cols=261 Identities=12% Similarity=0.085 Sum_probs=204.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT--TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
+.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+.. |-+......+.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~ 194 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAE 194 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 333455558999999999999999874 45543332 33678889999999999999999876 66788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDV------VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
..|.+.|++++|.+++..+.+.....+.. .+|..++.......+.+...++++.+.+. .+.+......+...+
T Consensus 195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l 273 (398)
T PRK10747 195 QAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHH
Confidence 99999999999999999997644332222 12333444444455666777777776443 355788889999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
...|+.++|..++.+..+. +++... .++.+....++.+++++.++...+. .+-|...+..+...|...+++++|
T Consensus 274 ~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998763 455532 2334445669999999999999876 344666788899999999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+.|+.+.+. .|+...+..+..++.+.|+.++|..++++-..
T Consensus 348 ~~~le~al~~------------------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALKQ------------------RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhc------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999975 89999999999999999999999999998754
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=3e-12 Score=125.53 Aligned_cols=288 Identities=12% Similarity=0.055 Sum_probs=208.1
Q ss_pred HhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 224 MNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302 (583)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 302 (583)
...|+++.|.+.+....+. .|+ ...+.....+....|+.+.|.+.+..+.+....+...........+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~-----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH-----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 4589999999999887764 344 4445566678888999999999999988754222223444568888999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHH
Q 007970 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT-TLMKAF---ALSSQPKLANK 378 (583)
Q Consensus 303 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~---~~~~~~~~a~~ 378 (583)
+.|...++.+.+.. +.+...+..+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..+++.+
T Consensus 170 ~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 170 HAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999997653 446678889999999999999999999999998754 333332 111221 22223333333
Q ss_pred HHHHHhcCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHH
Q 007970 379 VFDEMLRDP--RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY---GSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 379 ~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
.+..+.+.. ..+.+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+++.+++
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 444444321 12247889999999999999999999999999985 3444321 1122223445788899999988
Q ss_pred HHHHhhhhhccccCCCCCCCCCCCCH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhc
Q 007970 454 IKERCEVKKEGVNADSDLPPPLKPDE---ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530 (583)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~ 530 (583)
..+. .|+. ....++...|.+.|++++|.+.|+........|++..+..+ ..++...
T Consensus 325 ~lk~------------------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L-a~ll~~~-- 383 (409)
T TIGR00540 325 QAKN------------------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA-ADAFDQA-- 383 (409)
T ss_pred HHHh------------------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH-HHHHHHc--
Confidence 8876 4443 56778999999999999999999965444578999887755 7777776
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhc
Q 007970 531 SKHASQARQDRRRERKRAAEAFKFWLG 557 (583)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 557 (583)
|+.++|.+++++
T Consensus 384 ---------------g~~~~A~~~~~~ 395 (409)
T TIGR00540 384 ---------------GDKAEAAAMRQD 395 (409)
T ss_pred ---------------CCHHHHHHHHHH
Confidence 777777777764
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=1.1e-11 Score=121.60 Aligned_cols=291 Identities=10% Similarity=0.032 Sum_probs=207.0
Q ss_pred hcCChhHHHHHHHHHHHhCCCcchh-HHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCC
Q 007970 105 RASRKHLLVFVLERILEMGITLCMT-TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183 (583)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (583)
..|+++.|.+.+.+..+.. |++. .+-....++.+.|+.+.|.+.+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------------------------- 147 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-------------------------- 147 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------
Confidence 5689999999888876653 4433 3344567778889999999998887652
Q ss_pred cHHHHHhhcCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 007970 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNS--RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261 (583)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (583)
.|+. .+.......+...|+++.|.+.++.+.+. .+-+...+..+...+
T Consensus 148 --------------------------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~~ 197 (409)
T TIGR00540 148 --------------------------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEAY 197 (409)
T ss_pred --------------------------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 1332 23444578888899999999999999885 344667788889999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcC
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY---CQQLQIDKAKELLREMADDAK--IEPDVVSYNILIDGFILID 336 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~ 336 (583)
...|+++.|.+++..+.+.+..+.......-..++ ...+..+.+.+.+..+..... .+.+...+..+...+...|
T Consensus 198 ~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 198 IRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99999999999999999887543332211111222 222222333334444433210 1237788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKIS--Y-TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI--VAWNMLVEGYCRMGLVEE 411 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 411 (583)
+.++|.+++++..+. .|+... + ....-.....++.+.+.+.++...+. .+-|+ ....++...+.+.|++++
T Consensus 278 ~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 278 DHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred ChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHH
Confidence 999999999999886 334332 1 11111223457788899999888874 34444 677799999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 412 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
|.+.|+........|+...+..+...+.+.|+.++|.++|++....
T Consensus 354 A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 354 AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999996444345799999999999999999999999999987654
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.8e-10 Score=104.46 Aligned_cols=330 Identities=14% Similarity=0.065 Sum_probs=210.1
Q ss_pred CCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCC
Q 007970 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203 (583)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (583)
...|...+-.....+.+.|..+.|...|.......|-..+.+..+..... .......+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit----------~~e~~~~l~----------- 218 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT----------DIEILSILV----------- 218 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc----------hHHHHHHHH-----------
Confidence 34455555555666777888888988888877765554443333221111 111111111
Q ss_pred CCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 007970 204 LLPKTFAPN--SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281 (583)
Q Consensus 204 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 281 (583)
.+.+.+ ...=--+..++....+.+++..-....... |.+-+...-+....+.....++|+|+.+|+++.+..
T Consensus 219 ---~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~---gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD 292 (559)
T KOG1155|consen 219 ---VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSV---GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND 292 (559)
T ss_pred ---hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 111111 111123445666666777777777777665 344333333344444556778889999998888763
Q ss_pred CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 282 VP---ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358 (583)
Q Consensus 282 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 358 (583)
| .|..+|+.++ |.+..+-.-+. +-....... +--+.|+.++..-|.-.++.++|+..|+...+.+ +-...
T Consensus 293 -PYRl~dmdlySN~L--Yv~~~~skLs~-LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~ 365 (559)
T KOG1155|consen 293 -PYRLDDMDLYSNVL--YVKNDKSKLSY-LAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLS 365 (559)
T ss_pred -CCcchhHHHHhHHH--HHHhhhHHHHH-HHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhH
Confidence 2 2456666655 33322211111 111111112 2334566667777777888888888888888764 33466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
.|+.+..-|....+...|.+-+...++ -.|.|-..|-.|.++|.-.+.+.-|+-+|++..+. .+-|...|..|..+|
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECY 442 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHH
Confidence 777777788888888888888888877 45677788888888888888888888888888775 244677888888888
Q ss_pred HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+.++.++|++.|+++.... ..+...+..|...|-+.++.++|...+++..+
T Consensus 443 ~kl~~~~eAiKCykrai~~~-----------------dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLG-----------------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhccHHHHHHHHHHHHhcc-----------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888888887642 33556778888888888888888888887654
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.5e-11 Score=106.02 Aligned_cols=293 Identities=15% Similarity=0.150 Sum_probs=200.2
Q ss_pred cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcH
Q 007970 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 185 (583)
+.+.++|.++|-+|.+.+ +.+..+--+|.+.|-+.|..+.|+++.+.+.++. +.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dl------------------------ 101 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DL------------------------ 101 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CC------------------------
Confidence 456777777777777653 4445555667777777777777777777766520 00
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 007970 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265 (583)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 265 (583)
.+..-..+...|..-|...|-++.|+.+|..+.+. ...-......|+..|-...
T Consensus 102 ----------------------T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----~efa~~AlqqLl~IYQ~tr 155 (389)
T COG2956 102 ----------------------TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----GEFAEGALQQLLNIYQATR 155 (389)
T ss_pred ----------------------chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHHHHhh
Confidence 00111234456677777888888888888887764 2333556777888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 266 SMDRARQVLAEMTRIGVPAN----RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
+|++|+++-+.+.+.+-.+. ...|.-|...+....+.+.|..++.+..+.. +..+..--.+.......|+++.|
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~A 233 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKA 233 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHH
Confidence 88888888888877654333 2344555666666788888888888887542 23333444455677788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
++.++...+.+..--+.+...|..+|.+.|++++....+..+.+. .+....-..+...-....-.+.|..++.+-+.
T Consensus 234 V~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 234 VEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 999988888765555677788888999999999999988888763 34444455555555555667777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHH
Q 007970 422 NGFYPNVATYGSLANGISL---ARKPGEALLLWKEIKER 457 (583)
Q Consensus 422 ~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 457 (583)
. +|+...+..++..... -|...+.+..++.|...
T Consensus 311 r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 311 R--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred h--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4 7899888888887533 34566677777777665
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.2e-11 Score=110.36 Aligned_cols=226 Identities=14% Similarity=0.044 Sum_probs=165.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 374 (583)
.+.-.|+.-.|..-|+..+....- +...|--+...|....+.++....|+.....+ +.++.+|..-.+...-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 345578899999999999864322 22337777778999999999999999999875 446778877778888889999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
+|..=|++.+. -.+.+...|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...+++++|.+.|+..
T Consensus 412 ~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999986 34455666777777777889999999999999986 6667789999999999999999999999999
Q ss_pred HHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhhhhhcc
Q 007970 455 KERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK-YKKIYVEMHSRMFTS 531 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~~~~~~l~~~~~~ 531 (583)
++.-... ..+..+ ..+...++..- -.+++..|..++++..+ +.|.... +..+ ..+
T Consensus 489 i~LE~~~-----------~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tl-aq~------- 546 (606)
T KOG0547|consen 489 IELEPRE-----------HLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETL-AQF------- 546 (606)
T ss_pred Hhhcccc-----------ccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHH-HHH-------
Confidence 8751100 011112 22233333333 44999999999999975 4554432 3222 222
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 532 KHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
...+|..++|+++|++.
T Consensus 547 ----------~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 547 ----------ELQRGKIDEAIELFEKS 563 (606)
T ss_pred ----------HHHHhhHHHHHHHHHHH
Confidence 34459999999998753
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=8.9e-13 Score=126.17 Aligned_cols=288 Identities=17% Similarity=0.158 Sum_probs=221.4
Q ss_pred CChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007970 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--VPANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 227 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
-+..+|+..|..+..+ ..-.......+..+|...+++++|.++|+.+.+.. .--+..+|.+.+-.+-+ +-
T Consensus 333 y~~~~A~~~~~klp~h----~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v 404 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH----HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EV 404 (638)
T ss_pred HHHHHHHHHHHhhHHh----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hH
Confidence 3567899999886664 33334666778899999999999999999998753 11245667766644432 22
Q ss_pred HHHHH-HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 305 AKELL-REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP-TKISYTTLMKAFALSSQPKLANKVFDE 382 (583)
Q Consensus 305 A~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 382 (583)
++..+ +.+++. -+..+.+|.++..+|..+++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|..
T Consensus 405 ~Ls~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 405 ALSYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 22222 233322 2456789999999999999999999999999986 44 688899999889999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhh
Q 007970 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461 (583)
Q Consensus 383 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 461 (583)
.+. -.+.+-..|..+...|.+.++++.|+-.|+++.+- .| +.+....+...+.+.|+.++|+++++++...
T Consensus 481 Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---- 552 (638)
T KOG1126|consen 481 ALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---- 552 (638)
T ss_pred hhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc----
Confidence 986 33445567777889999999999999999999975 44 5566777778899999999999999999865
Q ss_pred hccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHH
Q 007970 462 KEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540 (583)
Q Consensus 462 ~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 540 (583)
.|. ...--..+..+...+++++|+..++++++ +.|+..+...++...+.+.
T Consensus 553 --------------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~------------ 604 (638)
T KOG1126|consen 553 --------------DPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRL------------ 604 (638)
T ss_pred --------------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHH------------
Confidence 443 34444556777889999999999999986 7899888777777777776
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccCCCCCC
Q 007970 541 RRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGD 575 (583)
Q Consensus 541 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 575 (583)
|..+.|..-+. -+|+.+|.|.+
T Consensus 605 -----~~~~~Al~~f~--------~A~~ldpkg~~ 626 (638)
T KOG1126|consen 605 -----GNTDLALLHFS--------WALDLDPKGAQ 626 (638)
T ss_pred -----ccchHHHHhhH--------HHhcCCCccch
Confidence 88888886553 35667666655
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.8e-10 Score=104.42 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=216.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 007970 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286 (583)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 286 (583)
.|++.+...-+....+.-...+++.|+.+|+.+.+.. +--..|..+|..++-.-.....+ ..+.+-...-.+--+
T Consensus 256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRP 330 (559)
T ss_pred ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCc
Confidence 4566667777777778888999999999999999863 22233677888777543222221 222221111113345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.|+..+.+.|+-.++.++|...|+..++.+ +.....|+.+..-|...++...|++-++..++-. +-|...|-.+.++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 677788899999999999999999998643 3456789999999999999999999999999874 6688999999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 446 (583)
|.-.+.+.-|+-+|++..+ -.|.|...|.+|..+|.+.++.++|++-|.+....|- .+...+..|...|-+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999987 5677899999999999999999999999999998763 366889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
|.+.|++.++....++ .+.|. ......|..-+.+.+++++|..+......
T Consensus 485 Aa~~yek~v~~~~~eg-----------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEG-----------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhhc-----------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999888632211 12342 34555577788899999999887776653
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.7e-10 Score=106.41 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=174.6
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340 (583)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 340 (583)
+.-.|+.-.|.+-|+..++.... +...|.-+..+|....+.++....|+...+...- ++.+|..-...+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHH
Confidence 34468888999999999987633 3344777888899999999999999999765443 44456666666677789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 341 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
|..=|++.+... +.+...|..+..+..+.++++++...|++..+ .+|.-+..|+.....+...+++++|.+.|+...
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999999863 34566777777777889999999999999988 577788999999999999999999999999988
Q ss_pred HCCCCCC-------HHHH--HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHH
Q 007970 421 ENGFYPN-------VATY--GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICV 490 (583)
Q Consensus 421 ~~g~~p~-------~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 490 (583)
+. .|+ +..+ ..++ .+...+++..|+.+++++.+. .|.. ..+.+|...-.
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~------------------Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIEL------------------DPKCEQAYETLAQFEL 548 (606)
T ss_pred hh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHcc------------------CchHHHHHHHHHHHHH
Confidence 64 333 2221 2222 233458999999999999865 6654 78999999999
Q ss_pred hhhhHHHHHHHHHHHHH
Q 007970 491 RAAFFRKALEIVACMEE 507 (583)
Q Consensus 491 ~~g~~~~A~~~~~~~~~ 507 (583)
..|+.++|+++|++...
T Consensus 549 Q~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999999864
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.6e-12 Score=123.02 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=216.8
Q ss_pred ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHH
Q 007970 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187 (583)
Q Consensus 108 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 187 (583)
+..+|+..|..+... +.-+.++...+..+|...+++++|+++|+.+....|-.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-------------------------- 386 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-------------------------- 386 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------------------
Confidence 567889999885554 45566888889999999999999999999998753211
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 007970 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML-GAMRRQEDNASHPDHVTYTTVVSALVKAGS 266 (583)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 266 (583)
..+..+|.+.+-.+-+. -++..+ +.+... .+-.+.+|.++.++|.-.++
T Consensus 387 ----------------------v~~meiyST~LWHLq~~----v~Ls~Laq~Li~~----~~~sPesWca~GNcfSLQkd 436 (638)
T KOG1126|consen 387 ----------------------VKGMEIYSTTLWHLQDE----VALSYLAQDLIDT----DPNSPESWCALGNCFSLQKD 436 (638)
T ss_pred ----------------------ccchhHHHHHHHHHHhh----HHHHHHHHHHHhh----CCCCcHHHHHhcchhhhhhH
Confidence 24556666666554322 222222 223332 34457899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS---YNILIDGFILIDDSAGALT 343 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~ 343 (583)
.+.|++.|+..++.. +-...+|+.+.+-+.....+|.|...|+..+. .|+.. |-.+...|.+.++++.|+-
T Consensus 437 h~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred HHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHHHhhhhheeccchhhHHHH
Confidence 999999999998865 33778889888889999999999999998873 44444 4456677889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
.|+.+.+-+ +-+......+...+.+.|+.++|+++++++.. -.+.|+..--..+..+...+++++|+..++++++.
T Consensus 511 ~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~- 586 (638)
T KOG1126|consen 511 HFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKEL- 586 (638)
T ss_pred HHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-
Confidence 999998864 33566777778888899999999999999876 34556655556667788889999999999999985
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++-+...|..+...|.+.|+.+.|+.-|..+...
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3445567788888999999999999998888754
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.7e-11 Score=104.99 Aligned_cols=292 Identities=16% Similarity=0.155 Sum_probs=186.4
Q ss_pred CCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHH
Q 007970 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258 (583)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll 258 (583)
.+.+.|.+.|-.++ ...+.+..+..+|.+.|-+.|..+.|+++...+....+....-.......|.
T Consensus 49 ~Q~dKAvdlF~e~l--------------~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 49 NQPDKAVDLFLEML--------------QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred cCcchHHHHHHHHH--------------hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44555555555555 2223445556677788888888888888888777642111111123445566
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhc
Q 007970 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV---VSYNILIDGFILI 335 (583)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~ 335 (583)
.-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+..+-.... ..|.-+...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 67777888888888888887754 2344556677778888888888888877776543322222 2345555555667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (583)
.+.+.|..++++..+.+ +.....--.+.+.....|++..|.+.++.+.+. +..--..+...|..+|...|+.++...+
T Consensus 194 ~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77888888888877753 223344445566677788888888888887763 2222245567777888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHH---hh
Q 007970 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV---RA 492 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~ 492 (583)
+..+.+. .+....-..+...-......+.|...+.+-... +|+...+..++..-. ..
T Consensus 272 L~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r------------------~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 272 LRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR------------------KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh------------------CCcHHHHHHHHHhhhccccc
Confidence 8887765 344444455555544555666666666666655 788877777776542 33
Q ss_pred hhHHHHHHHHHHHHH
Q 007970 493 AFFRKALEIVACMEE 507 (583)
Q Consensus 493 g~~~~A~~~~~~~~~ 507 (583)
|...+.+-.++.|..
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 556677777777753
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=5.5e-10 Score=100.94 Aligned_cols=287 Identities=14% Similarity=0.110 Sum_probs=225.9
Q ss_pred cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcH
Q 007970 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 185 (583)
.|++..|..+..+-.+.+ ......|..-+.+.-..|+.+.+-..+.+..+..
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--------------------------- 148 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--------------------------- 148 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC---------------------------
Confidence 589999999988877766 2233455556677788899999999888887621
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 007970 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265 (583)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 265 (583)
-.++..+.-.........|+++.|..-+.++... -+.++........+|.+.|
T Consensus 149 -----------------------~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----~pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 149 -----------------------GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM----TPRHPEVLRLALRAYIRLG 201 (400)
T ss_pred -----------------------CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh----CcCChHHHHHHHHHHHHhc
Confidence 1355667778888899999999999999998886 4556778889999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 266 SMDRARQVLAEMTRIGVPANR-------ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338 (583)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 338 (583)
++..+..++..+.+.+.-.+. .+|+.+++-....+..+.-...++...+.. +.++..-..++.-+..+|+.
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCCh
Confidence 999999999999998865554 355666666666666666666777775433 45566667788888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007970 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418 (583)
Q Consensus 339 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (583)
++|.++..+..+.+..|. ... .-.+.+.++...-++..++-.+.++ .++..+.+|...|.+.+.|.+|.+.|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHP--EDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999998876665 222 2245677888888888877777444 4558889999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 419 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+ ..|+..+|+.+..++.+.|+..+|.+..++....
T Consensus 354 Al~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 354 ALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 886 4799999999999999999999999999988754
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=3.7e-10 Score=102.03 Aligned_cols=271 Identities=15% Similarity=0.194 Sum_probs=219.9
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 305 (583)
.|++..|++...+-.+. ..-....|..-..+.-..|+.+.+-.++.++.+..-.++....-.........|+++.|
T Consensus 97 eG~~~qAEkl~~rnae~----~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH----GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhc----CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 79999999999997776 23335667777888889999999999999999875467777888888899999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 007970 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK-------ISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~ 378 (583)
..-++++.... +.++........+|.+.|++.....++..+.+.|.-.++ .+|..+++-....+..+.-..
T Consensus 173 ~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 173 RENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 99999987532 557788899999999999999999999999999876554 356777776666666676677
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.|+...+ ..+.++..-.+++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+.++.+.-++..+...+..
T Consensus 251 ~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 251 WWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 8888776 4556777788899999999999999999999998876665 223334667888888888888777762
Q ss_pred hhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhh
Q 007970 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 528 (583)
+-+...+.+|...|.+.+.|.+|...|+.... ..|+..+|.-+ ...+...
T Consensus 325 -----------------~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~l-a~~~~~~ 374 (400)
T COG3071 325 -----------------PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAEL-ADALDQL 374 (400)
T ss_pred -----------------CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHH-HHHHHHc
Confidence 33347889999999999999999999998774 67888888876 7777666
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.1e-09 Score=101.38 Aligned_cols=465 Identities=12% Similarity=0.041 Sum_probs=304.6
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
..-+..+++-+....+ +.-|+-+-+++.. +.-|+...--++.++.-.|++++|..+...-.-.
T Consensus 16 ~~~~~~~~r~~l~q~~--y~~a~f~adkV~~-------------l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le-- 78 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHR--YKTALFWADKVAG-------------LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE-- 78 (611)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHHHHHHh-------------ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--
Confidence 3344444444444444 6667766666654 2333333444777888888888888887665332
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHh-------C--CCcchhH----HHHHH-------HHHHcCCChH
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLER----ILEM-------G--ITLCMTT----FQSLV-------AAYVGFGDLE 145 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~-------~--~~~~~~~----~~~l~-------~~~~~~g~~~ 145 (583)
+.|..+......++.+..++++|..++.. +... + +.+|..- -+... ..|....+.+
T Consensus 79 ~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 79 KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNRE 158 (611)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHH
Confidence 25777777778888888888888887772 1110 0 0011100 11111 2233344556
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhcccc-------------c--cCCCCCCCcHHHHHhhcCCCCC-CC--CCCCCCCC
Q 007970 146 IAETIVQAMREGRRDVCKIIRELDLEDYS-------------S--ENEGDDDDDDEVFEKLLPNSIN-PS--SEPPLLPK 207 (583)
Q Consensus 146 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~~ 207 (583)
+|...|.+....+..-......+...... + ....+.+.-...|+-....... .+ .....--.
T Consensus 159 ~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~ 238 (611)
T KOG1173|consen 159 EARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI 238 (611)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh
Confidence 66655554443332221111111000000 0 0001111111122211100000 00 00001112
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 007970 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
+...++.....-..-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=..+++. .|..+.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~ 313 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKAL 313 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCc
Confidence 33556677777788888999999999999999886 5666667777777888999988877777777775 367788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
+|-++.-.|...|+..+|.+.|.+...-. +.=...|-.+...|+..+..++|+..+...-+.- +-...-+.-+.--|
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEY 390 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHH
Confidence 99999999999999999999998885321 1224678889999999999999999998877641 21222233344457
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhc
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----G--FYPNVATYGSLANGISLA 441 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g--~~p~~~~~~~l~~~~~~~ 441 (583)
.+.++.+.|.++|..... -.|.|+...+-+.-.....+.+.+|..+|+..+.. + ..--..+++.|..+|.+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 789999999999999876 45667888888887788889999999999988731 0 112456789999999999
Q ss_pred CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
+++++|+..+++.+... +-+..++.++.-.|...|+++.|...|.+.. .+.|+..+...+
T Consensus 469 ~~~~eAI~~~q~aL~l~-----------------~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-----------------PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISEL 528 (611)
T ss_pred hhHHHHHHHHHHHHHcC-----------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHH
Confidence 99999999999998762 4466899999999999999999999999987 588998777666
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=1.6e-08 Score=97.11 Aligned_cols=439 Identities=14% Similarity=0.114 Sum_probs=284.3
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|..++..|- .+. +...+.+.+.+++. .+-...|.....-.+...|+.++|...........+
T Consensus 8 ~~lF~~~lk~yE-~kQ--YkkgLK~~~~iL~k------------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~ 72 (700)
T KOG1156|consen 8 NALFRRALKCYE-TKQ--YKKGLKLIKQILKK------------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL 72 (700)
T ss_pred HHHHHHHHHHHH-HHH--HHhHHHHHHHHHHh------------CCccchhHHhccchhhcccchHHHHHHHHHHhccCc
Confidence 445666666664 344 88899999988874 344455555555566678999999999988887554
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 169 (583)
.+.+.|+.+.-.+....++++|+..|......+ +.|...+.-|.-.-++.++++-....-..+.+..+.....+....
T Consensus 73 -~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 73 -KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred -ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 477889988888888889999999999998886 667788887777777778887777776666665554444333332
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH------HHHHHhcCChhHHHHHHHHHHhcc
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL------MKGYMNEGRVSDTVRMLGAMRRQE 243 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~~ 243 (583)
.++.-.|....|..+.+....+... .|+...+... .....+.|..++|++.+......
T Consensus 151 ---vs~~L~g~y~~A~~il~ef~~t~~~------------~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 151 ---VAQHLLGEYKMALEILEEFEKTQNT------------SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhcc------------CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 2233456677777777776543211 3555544433 24556788888888887766553
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCCCH
Q 007970 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK-ELLREMADDAKIEPDV 322 (583)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~ 322 (583)
+......-.+-...+.+.+++++|..++..++... |.+...|..+..++.+..+.-++. .+|....+. .|..
T Consensus 215 ---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~---y~r~ 287 (700)
T KOG1156|consen 215 ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK---YPRH 287 (700)
T ss_pred ---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc---Cccc
Confidence 22223334455677889999999999999999875 444555555556665444444444 666666332 1221
Q ss_pred HHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhcC---------CC
Q 007970 323 VSY-NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL----ANKVFDEMLRD---------PR 388 (583)
Q Consensus 323 ~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~---------~~ 388 (583)
..- ..=+.......-.+..-.++..+.+.|+++- +..+...|-.....+- +..+...+... ..
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 111 1111112222233445567777888887653 3333333322221111 12222222111 01
Q ss_pred CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccc
Q 007970 389 VKVDIVAWN--MLVEGYCRMGLVEEAKRIIERMKENGFYPNVA-TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465 (583)
Q Consensus 389 ~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 465 (583)
-+|....|+ .++..+-+.|+++.|..+++..... .|+.. .|..=.+.+...|.+++|..++++..+.+
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD------- 435 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD------- 435 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------
Confidence 256655554 5677888999999999999999975 66644 45555677899999999999999998753
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Q 007970 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 510 (583)
.||..+-.--+.-..++++.++|.++...+.+.|.
T Consensus 436 ----------~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 ----------TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ----------chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 56655555666677889999999999999987664
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=3.6e-08 Score=94.50 Aligned_cols=483 Identities=12% Similarity=0.116 Sum_probs=280.3
Q ss_pred HHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHCCC
Q 007970 13 WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPK---KFLQLFDQMHEFGA 89 (583)
Q Consensus 13 ~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~ 89 (583)
-+-.|..+++.++ .++|.+.+..++.. +...+...+.+-..|+.+-+..+++-+.- ....+++.+...
T Consensus 172 ~eeyie~L~~~d~--~~eaa~~la~vln~-----d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r-- 242 (835)
T KOG2047|consen 172 REEYIEYLAKSDR--LDEAAQRLATVLNQ-----DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR-- 242 (835)
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHhcCc-----hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--
Confidence 3445667777776 77777777666532 11111223445567777777766655433 344444444432
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHH--hhhHHHHHHH
Q 007970 90 KPD--VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR--EGRRDVCKII 165 (583)
Q Consensus 90 ~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 165 (583)
-+| ...|.+|..-|.+.|.++.|..+|++.... ..+..-|..+.+.|+...+-.-+..+= +. +.+...
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~e---- 314 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEE---- 314 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChh----
Confidence 234 356899999999999999999999998775 346666777777776543322222111 10 000000
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 245 (583)
...+++.....|+.++..... -...++-+..+.++..|..-+..+ .|+..+-...|.++.+.
T Consensus 315 -----------d~~dl~~~~a~~e~lm~rr~~--~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~--- 376 (835)
T KOG2047|consen 315 -----------DDVDLELHMARFESLMNRRPL--LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT--- 376 (835)
T ss_pred -----------hhhhHHHHHHHHHHHHhccch--HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc---
Confidence 001111122222222210000 000000112245566776666554 67777888888887775
Q ss_pred CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007970 246 ASHPD------HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN---RITYNILLKGYCQQLQIDKAKELLREMADDA 316 (583)
Q Consensus 246 ~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 316 (583)
+.|. ...|..+...|-..|+++.|..+|++..+...+-- ..+|.....+=.+..+++.|+++.+....-.
T Consensus 377 -vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 377 -VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred -cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence 3332 34678888888999999999999999887654322 3445555555566778888888887764311
Q ss_pred CC----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007970 317 KI----------------EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380 (583)
Q Consensus 317 ~~----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 380 (583)
.. ..+...|...+..-...|-++....+|+.+....+. ++.........+....-++++.++|
T Consensus 456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 10 012334666666666778888889999999887543 3333333333344556688899999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHHHH
Q 007970 381 DEMLRDPRVKVDIVAWNMLVEGYCRM---GLVEEAKRIIERMKENGFYPNVATYGSLANG--ISLARKPGEALLLWKEIK 455 (583)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 455 (583)
++-+.-+..+.-...|+..+.-+.+. -.++.|..+|++.++ |++|...-+-.|+.+ =-..|....|+.+++++-
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88776433333346788777766653 468999999999998 677655433333333 234688888999999876
Q ss_pred HHhhhhhccccCCCCCCCCCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHhhhhhhcc
Q 007970 456 ERCEVKKEGVNADSDLPPPLKPDE--ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY--KKIYVEMHSRMFTS 531 (583)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~~~~~~l~~~~~~ 531 (583)
.. +++.. ..|+..|.-....=-......++++..+. -|+...- -.-+.++-..
T Consensus 614 ~~-----------------v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtk---- 670 (835)
T KOG2047|consen 614 SA-----------------VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETK---- 670 (835)
T ss_pred hc-----------------CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhh----
Confidence 53 34443 56666554333332334555666666542 3443321 1112344444
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCccccc
Q 007970 532 KHASQARQDRRRERKRAAEAFKFWLGL----PNSYYGSEWRL 569 (583)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~ 569 (583)
-|..+.|...+.-- +.+-.+.-|..
T Consensus 671 -------------lGEidRARaIya~~sq~~dPr~~~~fW~t 699 (835)
T KOG2047|consen 671 -------------LGEIDRARAIYAHGSQICDPRVTTEFWDT 699 (835)
T ss_pred -------------hhhHHHHHHHHHhhhhcCCCcCChHHHHH
Confidence 49999998877432 33333555543
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=3.3e-10 Score=111.94 Aligned_cols=438 Identities=14% Similarity=0.093 Sum_probs=245.3
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHH
Q 007970 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80 (583)
Q Consensus 1 m~~~g~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 80 (583)
|...|+.|+.+||..+|..||..|+ .+.|- +|.-|.. ...+-+...|+.++......++.+.+.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gd--ieaat-if~fm~~-----------ksLpv~e~vf~~lv~sh~~And~Enpk-- 79 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGD--IEAAT-IFPFMEI-----------KSLPVREGVFRGLVASHKEANDAENPK-- 79 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCC--Ccccc-chhhhhc-----------ccccccchhHHHHHhcccccccccCCC--
Confidence 3468999999999999999999998 77776 7776654 235567778888888888888887776
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHH----HhCCCcchhHH--------------HHHHHHHH
Q 007970 81 FDQMHEFGAKPDVLTYNVMIKLCARASRKHL---LVFVLERIL----EMGITLCMTTF--------------QSLVAAYV 139 (583)
Q Consensus 81 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~ 139 (583)
.|...||..|..+|...|+... +.+.++.+. ..|+..-..-+ ..++....
T Consensus 80 ---------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 80 ---------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred ---------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 4788889999999988888654 222122221 22221111111 11122222
Q ss_pred cCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
-.|-++.+++++..++....+.+... .+. ...-......++...+- . . .+ .+++.++..+
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~v-fLr------qnv~~ntpvekLl~~ck-s----------l-~e-~~~s~~l~a~ 210 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQV-FLR------QNVVDNTPVEKLLNMCK-S----------L-VE-APTSETLHAV 210 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHH-HHH------HhccCCchHHHHHHHHH-H----------h-hc-CCChHHHHHH
Confidence 23334444444433332111100000 000 00000011111111100 0 0 11 4889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
+.+-...|+.+.|..++..|++. |.+.+.+-|-.++-+ .++...+..++..|.+.|+.|+..|+.-.+-.+..+
T Consensus 211 l~~alaag~~d~Ak~ll~emke~---gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 211 LKRALAAGDVDGAKNLLYEMKEK---GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHHhcCchhhHHHHHHHHHHc---CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 99999999999999999999988 577777766666655 788888899999999999999988887666555553
Q ss_pred CCHHHHHHH-----------HHHHHh------------------------cCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKEL-----------LREMAD------------------------DAKIEPDVVSYNILIDGFILIDDSAGALTF 344 (583)
Q Consensus 300 ~~~~~A~~~-----------~~~~~~------------------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 344 (583)
|....+.+. +..+.+ ..|+......|...+.. ...|.-++..++
T Consensus 285 ~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veql 363 (1088)
T KOG4318|consen 285 GQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQL 363 (1088)
T ss_pred hhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHH
Confidence 332211110 111100 00111111223222221 224555666666
Q ss_pred HHHHHHCCC--CC-CHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHhcCCC-----------
Q 007970 345 FNEMRARGI--AP-TKISYTTLMKAFALSS----------------------QPKLANKVFDEMLRDPR----------- 388 (583)
Q Consensus 345 ~~~m~~~~~--~p-~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~----------- 388 (583)
-..|..... .+ +...|..++.-|.+.- ...+..+......+..+
T Consensus 364 vg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~E 443 (1088)
T KOG4318|consen 364 VGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTE 443 (1088)
T ss_pred HhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHH
Confidence 555533211 11 2233433333332211 11111111111111000
Q ss_pred -----C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 389 -----V------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 389 -----~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
. .+-...-+.++-.+++..+..+++..-+.....-+ | ..|..|+.-+....+.+.|..+..+....
T Consensus 444 ler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~ 520 (1088)
T KOG4318|consen 444 LERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTR 520 (1088)
T ss_pred HhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhccc
Confidence 0 00112234455555555555566555444443312 1 56788888888888889998888887654
Q ss_pred hhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.. .+..|..-+..+.+.+.+.+...++..+++++..
T Consensus 521 d~--------------s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 521 DE--------------SIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred ch--------------hhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 22 3455667788899999999999999999999975
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.5e-09 Score=102.24 Aligned_cols=288 Identities=13% Similarity=0.047 Sum_probs=214.5
Q ss_pred CCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCC
Q 007970 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203 (583)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (583)
..-+.........-+...+++.+..++++.+.+..
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--------------------------------------------- 274 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--------------------------------------------- 274 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---------------------------------------------
Confidence 34556666667777777788888888877776632
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 007970 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283 (583)
Q Consensus 204 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (583)
++....+..-|.++...|+..+-..+=.++.+. .+....+|.++.--|...|+..+|.+.|.+..... +
T Consensus 275 ------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~----yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~ 343 (611)
T KOG1173|consen 275 ------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL----YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-P 343 (611)
T ss_pred ------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh----CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-c
Confidence 466666667777888888887777777777765 45567889988888888899999999998877654 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 363 (583)
.-...|..+.+.|.-.+..+.|+..+....+.- +-...-+.-+.--|.+.+...-|.++|.+.... .+.|+...+-+
T Consensus 344 ~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~El 420 (611)
T KOG1173|consen 344 TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHEL 420 (611)
T ss_pred cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhh
Confidence 334578888888988999999998887775421 112222233344577788899999999888875 35567777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 364 MKAFALSSQPKLANKVFDEMLRDP-----RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 364 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
.-.....+.+.+|..+|+...... ....-..+++.|..+|.+.+.+++|+..+++.+.. .+.+..++..+.-.|
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIY 499 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHH
Confidence 766667788899999888876310 01123456888999999999999999999999876 456888999999999
Q ss_pred HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 489 (583)
...|+++.|++.|.+... +.|+..+-..++..+
T Consensus 500 ~llgnld~Aid~fhKaL~------------------l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALA------------------LKPDNIFISELLKLA 532 (611)
T ss_pred HHhcChHHHHHHHHHHHh------------------cCCccHHHHHHHHHH
Confidence 999999999999999884 489887777766544
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=4.8e-10 Score=101.85 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
....+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.++...+.. +.+...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 3556677777777778888888777777664 23345566667777777777777777777776654 344556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
+...+...|++++|...+++.............+..+...+...|++++|...+.+..... +.+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 6667777777777777777765422212223344445555555555555555555555432 223344444555555555
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555555442 22333444444445555555555555544443
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=6.8e-10 Score=100.85 Aligned_cols=201 Identities=14% Similarity=0.052 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3445556666666666666666666665421 2334555666666666677777777776666543 334455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 445 (583)
.+...|++++|.+.++...+....+.....+..+..++...|++++|.+.+.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 6777777777777777776532222334556667777778888888888888777642 334556777777777888888
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 446 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+|...++++.+.. +.+...+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-----------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888777641 33445566667777778888888887777653
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.4e-09 Score=93.35 Aligned_cols=397 Identities=13% Similarity=0.054 Sum_probs=219.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC
Q 007970 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143 (583)
Q Consensus 64 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 143 (583)
+..++...|++++|...++.+.+.. .++...+..|..++.-.|.+.+|..+-... +.++-....|+....+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCc
Confidence 5566778999999999999887744 466777777777777888888888766543 3344455556677777888
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHH
Q 007970 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT-TLMKG 222 (583)
Q Consensus 144 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~ 222 (583)
-++-..+.+.+.....+..+. +..+...-.+.+|+++|.+++.. .|.-...| .+.-+
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSL-------AsvhYmR~HYQeAIdvYkrvL~d---------------n~ey~alNVy~ALC 194 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSL-------ASVHYMRMHYQEAIDVYKRVLQD---------------NPEYIALNVYMALC 194 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHhc---------------ChhhhhhHHHHHHH
Confidence 777766666555432222211 11112234567899999999833 34444444 34567
Q ss_pred HHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--------------------
Q 007970 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV-------------------- 282 (583)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------- 282 (583)
|.+..-++.+.++++-..+. .+.+....+.......+.=+-..|..-.+.+...+-
T Consensus 195 yyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 195 YYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred HHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 88888899999999888775 333444444444333332111122222222222110
Q ss_pred ------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHH
Q 007970 283 ------PA-----NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-----LIDDSAGALTFFN 346 (583)
Q Consensus 283 ------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~~~~~ 346 (583)
-| -+..-..|+-.|.+.++.++|..+.+.+. ...|-......+..+-. ......-|.+.|+
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 00 01122234445667777777777766652 12232222222222111 1112233444444
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007970 347 EMRARGIAPTK-ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425 (583)
Q Consensus 347 ~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 425 (583)
-.-..+..-|. ..-.++..++.-..++++.+-+++.+.. -+..|...--.+.++++..|++.+|.++|-++....++
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s--YF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES--YFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 43333332221 2223444555555667777777776654 22233333334567777777777777777666544344
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
.+..-...|.++|.+.++++-|+.++-++.. +.+. ..+..+.+.|.+.+.+--|-+.|+.
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-------------------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-------------------PSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3333334455667777777777665544321 1222 3333445677777777777777777
Q ss_pred HHHcCCCCCHHHHH
Q 007970 505 MEEHGIPPNKTKYK 518 (583)
Q Consensus 505 ~~~~~~~p~~~~~~ 518 (583)
+.. +.|+++.|.
T Consensus 487 lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 487 LEI--LDPTPENWE 498 (557)
T ss_pred HHc--cCCCccccC
Confidence 653 567776664
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.3e-08 Score=95.02 Aligned_cols=467 Identities=13% Similarity=0.098 Sum_probs=264.4
Q ss_pred HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHH
Q 007970 18 SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97 (583)
Q Consensus 18 ~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 97 (583)
+.+...|+ +++|+...++++.. .|.+...+..-+-+.++.++|++|+.+.+.-... ..+...+-
T Consensus 20 n~~~~~~e--~e~a~k~~~Kil~~------------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~f 83 (652)
T KOG2376|consen 20 NRHGKNGE--YEEAVKTANKILSI------------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFF 83 (652)
T ss_pred HHhccchH--HHHHHHHHHHHHhc------------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhH
Confidence 55556666 99999999999863 4567888899999999999999999666543321 11111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccC
Q 007970 98 VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177 (583)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (583)
-=.-+..+.+..++|+..++.+. +.+..+...-...+.+.|++++|..+|+.+.+...+..+.....++.+.....
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 11223347889999999888222 22344666677889999999999999999966543322221111111111000
Q ss_pred CCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc-----CCCC-CCH
Q 007970 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED-----NASH-PDH 251 (583)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~-~~~ 251 (583)
.+. +.+... ..-..+-..+....-.+...|++.+|++++....+... .... -+.
T Consensus 160 -----~~~-~~q~v~--------------~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEei 219 (652)
T KOG2376|consen 160 -----QVQ-LLQSVP--------------EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEI 219 (652)
T ss_pred -----hHH-HHHhcc--------------CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhH
Confidence 010 122211 00011233334455677889999999999998832110 0000 111
Q ss_pred H-----HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC-----
Q 007970 252 V-----TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR----ITYNILLKGYCQQLQID-KAKELLREMADDA----- 316 (583)
Q Consensus 252 ~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~----- 316 (583)
. .-..+.-.+-..|+-++|..++...++.. ++|. ...|.|+.+-....-++ .++..++......
T Consensus 220 e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l 298 (652)
T KOG2376|consen 220 EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLL 298 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHH
Confidence 1 12233345567899999999999999876 3443 22333332211111111 1222222211000
Q ss_pred ----CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCC
Q 007970 317 ----KIEPDVVSY-NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL--SSQPKLANKVFDEMLRDPRV 389 (583)
Q Consensus 317 ----~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~ 389 (583)
.-....+.. +.++..|. +.-+.+.++-.... +..|. ..+..++..+.+ ...+..+..++....+. .
T Consensus 299 ~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~ 371 (652)
T KOG2376|consen 299 SKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--H 371 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--C
Confidence 000011111 22222222 22223332222211 12233 344455544333 22467778877777653 3
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhh
Q 007970 390 KVD-IVAWNMLVEGYCRMGLVEEAKRIIE--------RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460 (583)
Q Consensus 390 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 460 (583)
+-+ ..+...++......|+++.|++++. .+.+.+..|- +...+...+.+.++.+.|..++.++......
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 333 4566677888899999999999999 5555544444 5555666677777777777777777665332
Q ss_pred hhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHH
Q 007970 461 KKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539 (583)
Q Consensus 461 ~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~ 539 (583)
...+ .+.. .++.-++..-.+.|+-++|..+++++.+.. .+|.....++ |..+++.
T Consensus 450 ~~t~-----------s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~l-V~a~~~~----------- 505 (652)
T KOG2376|consen 450 QQTG-----------SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQL-VTAYARL----------- 505 (652)
T ss_pred hccc-----------chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHH-HHHHHhc-----------
Confidence 1110 1111 344444555567799999999999998643 4555555555 8888885
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCc
Q 007970 540 DRRRERKRAAEAFKFWLGLPNSYYGS 565 (583)
Q Consensus 540 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 565 (583)
+.+.|..+-+.++..+.-.
T Consensus 506 -------d~eka~~l~k~L~p~~~l~ 524 (652)
T KOG2376|consen 506 -------DPEKAESLSKKLPPLKGLK 524 (652)
T ss_pred -------CHHHHHHHhhcCCCcccch
Confidence 8889999999887777633
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=1.9e-08 Score=96.63 Aligned_cols=433 Identities=15% Similarity=0.116 Sum_probs=277.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
....|..++..| ..+++...+++.+.+.+.- .-...|.....-.+...|+.++|......-...+ .-+.+.|+.+.-
T Consensus 7 E~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl 83 (700)
T KOG1156|consen 7 ENALFRRALKCY-ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHH
Confidence 345566667666 5678888899888888742 2344555555555667899999999888877765 457788999888
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (583)
.+-...++++|++.|......+++...+++.+++... +.++++.....-.++++ -.+.....|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~---QmRd~~~~~~tr~~LLq--------------l~~~~ra~w 146 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI---QMRDYEGYLETRNQLLQ--------------LRPSQRASW 146 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HHHhhhhHHHHHHHHHH--------------hhhhhHHHH
Confidence 8888999999999999999988888887777654432 34445544444444441 123456778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV------SALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
..++.++.-.|+...|..+++...+... ..|+...+.... ....+.|.++.|.+.+..-... +......-.
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e 223 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhh
Confidence 9999999999999999999999987631 246665554333 3445678888888887665443 122233334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-LIDDSAGAL-TFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
.-...+.+.+++++|..++..++.. .||...|......+. +-.+..++. .+|....+. .|....-..+--...
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVL 298 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHh
Confidence 4566788899999999999999764 577666665554433 333334444 556555443 222111111111111
Q ss_pred hcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC----------CCCCHH--HH
Q 007970 369 LSSQ-PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE----NG----------FYPNVA--TY 431 (583)
Q Consensus 369 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g----------~~p~~~--~~ 431 (583)
...+ .+....++....+. |+++- +..+...|-.-...+-..++.-.+.. .| -+|... ++
T Consensus 299 ~~eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred CcchhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 2122 33344455555553 65543 33333333322222212222222211 11 134444 44
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 510 (583)
-.++..+-..|+++.|..+++.++.+ .|+. ..|..-.+.+.+.|++++|..++++.++..
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH------------------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH------------------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc------------------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 55667788999999999999999977 7876 778788899999999999999999998643
Q ss_pred CCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 511 PPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 511 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
.||.. .++-.+...-++ .+.++|.+...+.
T Consensus 436 ~aDR~-INsKcAKYmLrA-----------------n~i~eA~~~~skF 465 (700)
T KOG1156|consen 436 TADRA-INSKCAKYMLRA-----------------NEIEEAEEVLSKF 465 (700)
T ss_pred chhHH-HHHHHHHHHHHc-----------------cccHHHHHHHHHh
Confidence 34443 333335556666 7888998888766
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=1.4e-09 Score=96.41 Aligned_cols=411 Identities=11% Similarity=0.092 Sum_probs=238.6
Q ss_pred HHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHH
Q 007970 19 RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98 (583)
Q Consensus 19 ~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 98 (583)
.+-..|+ +++|+..|.-+... -.|+...+-.|..++.-.|.+.+|..+-....+ ++..-..
T Consensus 66 C~fhLgd--Y~~Al~~Y~~~~~~------------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RL 126 (557)
T KOG3785|consen 66 CYFHLGD--YEEALNVYTFLMNK------------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRL 126 (557)
T ss_pred HHHhhcc--HHHHHHHHHHHhcc------------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHH
Confidence 3345566 99999999888763 456677777788888888889998887766543 3333444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCC
Q 007970 99 MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178 (583)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (583)
++...-+.++-++...+.+.+... ..---+|.......-.+.+|+.+++.+....++..... ...+.+|.+.
T Consensus 127 lfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN---Vy~ALCyyKl 198 (557)
T KOG3785|consen 127 LFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN---VYMALCYYKL 198 (557)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH---HHHHHHHHhc
Confidence 445445555555555554444332 12222334444444456667777766665444332221 1223444455
Q ss_pred CCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CC----------------------------
Q 007970 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE--GR---------------------------- 228 (583)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~---------------------------- 228 (583)
.-++-+..++..-++ .++.++.+.|.......+. |+
T Consensus 199 DYydvsqevl~vYL~--------------q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 199 DYYDVSQEVLKVYLR--------------QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred chhhhHHHHHHHHHH--------------hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 444444444444331 1233333333333322221 11
Q ss_pred -----hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 007970 229 -----VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL--- 300 (583)
Q Consensus 229 -----~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 300 (583)
-+.|++++-.+.+. - +..-..++--|.+.+++.+|..+.+++.-. .|-......++ +...|
T Consensus 265 VvFrngEgALqVLP~L~~~-----I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~ 333 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKH-----I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQET 333 (557)
T ss_pred EEEeCCccHHHhchHHHhh-----C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhc
Confidence 22333333333221 1 123344555678889999999888765421 23233333332 23333
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 301 ----QIDKAKELLREMADDAKIEPDV-VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375 (583)
Q Consensus 301 ----~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 375 (583)
.+.-|...|+-. -.++..-|+ ..-..+.+++.-..++++++-.++.+...-.. |...--.+.++.+..|++.+
T Consensus 334 gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHH
Confidence 245566666544 334433333 34566777777888999999999998887433 43344457889999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAW-NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG-SLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~ 453 (583)
|+++|-.+.. ..+ .|..+| +.|.++|.+.+.++.|++++-++.. +.+..+.. .+...|.+.+.+=-|-+.|..
T Consensus 412 aEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 412 AEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred HHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999988754 123 345555 5567899999999999888766542 23444443 444568889988888888887
Q ss_pred HHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
+... .|+..-|. |+-....-+|..+....-.|-+.
T Consensus 487 lE~l------------------DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 487 LEIL------------------DPTPENWE---------GKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred HHcc------------------CCCccccC---------CccchHHHHHHHHHcCCCCCCch
Confidence 7653 88888775 34344455666665444444443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=6.4e-10 Score=113.45 Aligned_cols=234 Identities=15% Similarity=0.106 Sum_probs=127.7
Q ss_pred chHHHHHHHHHHHh---cCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhc---------CCcch
Q 007970 9 HVKAWSTVVSRLAA---SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANL---------GKPKK 76 (583)
Q Consensus 9 ~~~~~~~li~~~~~---~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~ 76 (583)
+...|...+.+... ...++.++|+..|++..+. .|.+...|..+..++... +++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l------------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~ 322 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM------------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIK 322 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc------------CCccHHHHHHHHHHHHHHHHcCCcccchHHHH
Confidence 34556666665322 2223467888888888873 233456666666555432 23566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 77 FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 77 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
|...+++..+.+. -+..++..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++...+
T Consensus 323 A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 323 AKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777776666542 245555566666666677777777777766664 44455666666666666776666666666655
Q ss_pred hhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007970 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236 (583)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (583)
..| .+...+..++..+...|++++|...+
T Consensus 401 l~P---------------------------------------------------~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 401 LDP---------------------------------------------------TRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCC---------------------------------------------------CChhhHHHHHHHHHhccCHHHHHHHH
Confidence 221 11222222333444556666666666
Q ss_pred HHHHhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007970 237 GAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 237 ~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
+++... ..| +...+..+..++...|+.++|...+..+.... +.+....+.+...|...| +.|...++.+.+
T Consensus 430 ~~~l~~----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQ----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHh----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 665543 223 23334455555556666666666666554431 222333344444445444 355555555443
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=5.9e-07 Score=86.47 Aligned_cols=408 Identities=11% Similarity=0.106 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEF-GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (583)
..|-.-+....++|+.......|+..... -+......|...+......+-.+.+..+|++.++. ++..-..-+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 35566666777888888888888887653 33334556888888888888899999999998875 33446667788
Q ss_pred HHcCCChHHHHHHHHHHHhhhHHHH--------HHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCC
Q 007970 138 YVGFGDLEIAETIVQAMREGRRDVC--------KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209 (583)
Q Consensus 138 ~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (583)
+++.+++++|.+.+..+...+..+. .|...+.+ .......+..-....++...+ ..+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl-is~~p~~~~slnvdaiiR~gi--------------~rf 243 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL-ISQNPDKVQSLNVDAIIRGGI--------------RRF 243 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH-HHhCcchhcccCHHHHHHhhc--------------ccC
Confidence 8899999999999988876433222 11111111 111122222233333333333 111
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC----------------------
Q 007970 210 APN--SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG---------------------- 265 (583)
Q Consensus 210 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---------------------- 265 (583)
+| ...|++|.+-|.+.|+++.|..+|++..+. .....-|+.+.++|+.-.
T Consensus 244 -tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~-----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 244 -TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT-----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred -cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 23 457899999999999999999999998774 334455555555554321
Q ss_pred ChHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC------HHHHHHH
Q 007970 266 SMDRARQVLAEMTRIG-----------VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD------VVSYNIL 328 (583)
Q Consensus 266 ~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~l 328 (583)
+++-.+.-|+.+.... .+.++..|..-+. ...|+..+-...|.++.+. +.|- ...|..+
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHH
Confidence 1233333444443321 1222333332222 2346677777777777643 2221 2468888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC----------CCC-----
Q 007970 329 IDGFILIDDSAGALTFFNEMRARGIAPT---KISYTTLMKAFALSSQPKLANKVFDEMLRDP----------RVK----- 390 (583)
Q Consensus 329 i~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~----- 390 (583)
...|-..|+.+.|..+|++..+...+-- ..+|......-.+..+++.|+.+.+....-. +.+
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 8899999999999999999887643321 3456666666667888999999888764311 111
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 391 -VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 391 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
.+...|+.+++..-..|-++....+|+++.+..+. ++.........+-.+.-++++.++|++-+..+.
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk---------- 542 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFK---------- 542 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC----------
Confidence 12445677777777789999999999999987553 444444444455667778899999988776532
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHh---hhhHHHHHHHHHHHHHcCCCCC
Q 007970 470 DLPPPLKPDE-ELLDALADICVR---AAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 470 ~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
.|+. .+|+..+..+.+ .-..+.|..+|++.++ |-+|.
T Consensus 543 ------~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 543 ------WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred ------CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 4554 677776655543 2468999999999987 55544
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=1.8e-09 Score=110.17 Aligned_cols=232 Identities=15% Similarity=0.032 Sum_probs=170.7
Q ss_pred CCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHh
Q 007970 249 PDHVTYTTVVSALVK-----AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ---------QLQIDKAKELLREMAD 314 (583)
Q Consensus 249 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~ 314 (583)
.+...|...+.+-.. .+++++|..+|++..+.. |.+...+..+..+|.. .+++++|...+++.++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 345556556555322 234679999999999864 4455666666655542 2458899999999976
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 007970 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394 (583)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 394 (583)
.. +.+...+..+...+...|++++|+..|+++.+.+ +.+...+..+..++...|++++|...+++..+. .+.+..
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~ 407 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAA 407 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChh
Confidence 42 4467788888888899999999999999999874 445677888888999999999999999999873 222333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
.+..++..+...|++++|++.++++.+.. .| +...+..+..++...|++++|...++++...
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---------------- 470 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---------------- 470 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----------------
Confidence 34444555777899999999999988653 34 4455677788888999999999999887654
Q ss_pred CCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 474 PLKPDE-ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 474 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+. .....+...|...| ++|...++.+.+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 5555 44455566777777 488888888754
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-07 Score=86.29 Aligned_cols=275 Identities=14% Similarity=0.107 Sum_probs=203.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 007970 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV-TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286 (583)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 286 (583)
.++.|+.....+..++...|+.++|+..|++.... .|+.. ....-.-.+.+.|+.+....+...+.... .-+.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-----dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta 300 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-----NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTA 300 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-----ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcch
Confidence 45678888999999999999999999999998763 44322 22222233457788888888877776542 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
..|-.-.......++++.|+.+-++.++.. +.+...|-.-...+...+++++|.-.|+..+... +-+...|..|+.+
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 333333344556788999999988887532 3445556555667788999999999999988762 4578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV-EGYCR-MGLVEEAKRIIERMKENGFYPNV-ATYGSLANGISLARK 443 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 443 (583)
|...|++.+|...-+...+ .++.+..+.+.+. ..+.- -.--++|.++++..+.. .|+- ...+.+...|...|.
T Consensus 378 YLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCc
Confidence 9999999999888877766 3445556655552 22222 22357899999888763 5653 456777778899999
Q ss_pred HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.++++.++++.... .||......|.+.+...+.+.+|+..|..... +.|+..
T Consensus 454 ~~D~i~LLe~~L~~------------------~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 454 TKDIIKLLEKHLII------------------FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred cchHHHHHHHHHhh------------------ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 99999999999876 89999999999999999999999999999874 566653
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=3e-10 Score=99.50 Aligned_cols=235 Identities=15% Similarity=0.075 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
|-.--+.+..+|.+.|.+.+|.+.|+..... .|-+.||..|-..|.+..+++.|+.++.+-++. +|-++....-
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g 295 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLG 295 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhh
Confidence 3334478999999999999999999998874 677889999999999999999999999998875 3556666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
..+.+-..++.++|.++|+...+.. +.++....++...|.-.++++-|+.+|+.+.+.|+. +...|+.+.-+|...+
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 8888999999999999999998754 346666777777888899999999999999999965 7888999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVD--IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
++|-++.-|++.... -..|+ ...|-.+....+..|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|..
T Consensus 373 Q~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 373 QIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred chhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 999999999988763 22233 4578888888889999999999999988763 4467789999888899999999999
Q ss_pred HHHHHHHH
Q 007970 450 LWKEIKER 457 (583)
Q Consensus 450 ~~~~~~~~ 457 (583)
++..+...
T Consensus 451 ll~~A~s~ 458 (478)
T KOG1129|consen 451 LLNAAKSV 458 (478)
T ss_pred HHHHhhhh
Confidence 99988765
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=3.8e-09 Score=102.65 Aligned_cols=245 Identities=20% Similarity=0.137 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRI-----G-VPANR-ITYNILLKGYCQQLQIDKAKELLREMADDA-----KI 318 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~ 318 (583)
..+...+...|...|+++.|..+++..++. | ..|.. ...+.+...|...+++.+|..+|++++... ..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555666777777777777777666543 1 01222 223346667777888888888777775421 11
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--
Q 007970 319 EPD-VVSYNILIDGFILIDDSAGALTFFNEMRA-----RGI-APT-KISYTTLMKAFALSSQPKLANKVFDEMLRDPR-- 388 (583)
Q Consensus 319 ~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 388 (583)
.|. ..+++.|..+|.+.|++++|..+++...+ .|. .|. ...++.+...|...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 34566777778888888777776665433 111 122 23356667778888999999988887655211
Q ss_pred CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 389 VKV----DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GF--YPN-VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 389 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+ -..+++.|...|...|++++|.+++++++.. +. .+. ...++.+...|.+.+++.+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2457899999999999999999999988642 11 222 456788889999999999999999987665
Q ss_pred hhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 458 CEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
.. ..| .-.|+. .+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~--~~g---------~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MK--LCG---------PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HH--HhC---------CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 31 111 124554 899999999999999999999999885
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=2.4e-07 Score=91.50 Aligned_cols=184 Identities=19% Similarity=0.181 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------CCCCCHHH--HHHHHHHHH
Q 007970 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------KIEPDVVS--YNILIDGFI 333 (583)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~--~~~li~~~~ 333 (583)
.+...+..+...|+|+ +++.|-..|....+..-...++....... .-+|+... +..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4555666666777543 45555556665555555555555543211 11344433 355566778
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 334 LIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 334 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
..|++++|++++++.+.+ .|+ +..|..-.+.+-+.|++.+|.+.++.... -..-|...-+-.+..+.+.|+.++|
T Consensus 206 ~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A 281 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEA 281 (517)
T ss_pred HhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHH
Confidence 899999999999998886 454 67778888889999999999999988876 3445666767778888899999999
Q ss_pred HHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhh
Q 007970 413 KRIIERMKENGFYPNV--------ATYGSLANGISLARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (583)
.+++......+..|-. ........+|.+.|++..|++.|..+.+.+.
T Consensus 282 ~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 282 EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999888766543322 1123345678899999999998888877653
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=9.1e-10 Score=108.89 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHH
Q 007970 79 QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146 (583)
Q Consensus 79 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 146 (583)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++......++.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~En 77 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAEN 77 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccC
Confidence 34555666677777777777777777777777666 77766666666666677777666666555543
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=7.8e-08 Score=94.40 Aligned_cols=411 Identities=14% Similarity=0.084 Sum_probs=247.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHh
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
.++-|...|..+.-++...|+++.+.+.|++....- --....|..+...|...|.-..|..+++......++..+....
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 344466666666666777777777777777665542 2345566667777777777777777776655544222222223
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-----------CChhHHHHHH
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE-----------GRVSDTVRML 236 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~ 236 (583)
+.....+....+..++++++..+++..... ..-......+..+.-+|... ....++++.+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~---------~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGG---------QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhh---------hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 333344555666666666666666532100 00012234444444444321 2345778888
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007970 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316 (583)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 316 (583)
++..+.. +..|+...| +.--|+..++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+..+.+.
T Consensus 468 e~av~~d--~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 468 EEAVQFD--PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHhcC--CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 8887763 344444433 444567789999999999999998667889999999999999999999999999888764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC-----CC--CHHHHHHHHHHHH
Q 007970 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR---------------------GI-----AP--TKISYTTLMKAFA 368 (583)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------~~-----~p--~~~~~~~l~~~~~ 368 (583)
+.... ....-+..-..-++.++++.....+... |. .| ...++..+..-..
T Consensus 544 ~~N~~--l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 544 GDNHV--LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred hhhhh--hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 43111 1111111122245555555544433221 00 00 0112222211111
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCC--C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKV--D------IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 440 (583)
. +.+.+..-.. +.+ ..+.| + ...|......+.+.++.++|.-.+.+.... .+-....|......+..
T Consensus 622 ~--~~~~~~se~~-Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 622 S--QLKSAGSELK-LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEV 696 (799)
T ss_pred h--hhhhcccccc-cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHH
Confidence 0 0000000000 111 11112 1 235666777888889999999888888764 34455667767777888
Q ss_pred cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHH--HHHHHHHcCCCCCHHHH
Q 007970 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALE--IVACMEEHGIPPNKTKY 517 (583)
Q Consensus 441 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~ 517 (583)
.|..++|.+.|..+... .|++ .+..++..++.+.|+-.-|.. ++..+.+.+ +.+...|
T Consensus 697 ~~~~~EA~~af~~Al~l------------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW 757 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALAL------------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAW 757 (799)
T ss_pred HHhhHHHHHHHHHHHhc------------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHH
Confidence 99999999999988854 8876 788999999999998888888 888888643 3345556
Q ss_pred HHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 007970 518 KKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 518 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 556 (583)
-.+ .+++... |+.++|.+.|.
T Consensus 758 ~~L-G~v~k~~-----------------Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 758 YYL-GEVFKKL-----------------GDSKQAAECFQ 778 (799)
T ss_pred HHH-HHHHHHc-----------------cchHHHHHHHH
Confidence 655 5555554 88888877774
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.1e-07 Score=82.25 Aligned_cols=277 Identities=10% Similarity=0.039 Sum_probs=197.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007970 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301 (583)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (583)
+++-.++...|...+-.+.... ..+-|......+...+...|+.++|...|+.....+ +-+........-.+.+.|+
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~--~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNT--TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhc--cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccC
Confidence 3344555555555554444332 356678889999999999999999999999988754 3333344444555677888
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 381 (583)
++....+...+.... ......|-.-.......+++..|+.+-++.++.. +-+...+-.-...+...+++++|.-.|.
T Consensus 282 ~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred HhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHH
Confidence 988888888776422 2233334444444556788999999998888764 2345555555567888999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHhHHHHHHHHHHHHhh
Q 007970 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA-NGIS-LARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~ 459 (583)
..+. --+-+..+|..|+.+|...|++.+|.-.-+..... +..+..++..+. ..|. ....-++|.+++++..+.
T Consensus 359 ~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 359 TAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 9876 34567899999999999999999999888877654 445666666552 3333 334457899999988754
Q ss_pred hhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhh
Q 007970 460 VKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528 (583)
Q Consensus 460 ~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 528 (583)
.|+. .....+...|...|..++++.+++.... ..||......+ .+++...
T Consensus 434 ----------------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~L-gd~~~A~ 484 (564)
T KOG1174|consen 434 ----------------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHL-GDIMRAQ 484 (564)
T ss_pred ----------------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHH-HHHHHHh
Confidence 8885 6777888999999999999999999874 56777655554 5554443
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.1e-11 Score=80.47 Aligned_cols=50 Identities=36% Similarity=0.673 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 105 (583)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777653
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1e-09 Score=96.15 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=190.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
..+..+|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+.+.|+.+|.+-++. .+-|+.....+...+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56778899999999999999988876 466778888999999999999999999888753 33444444556777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (583)
.++.++|.++|+...+.. +.+.....++...|.-.++++.|+.+|.++.+- |+ -++..|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999988863 556777777888888899999999999999884 44 567788888889999999999999
Q ss_pred HHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHh
Q 007970 415 IIERMKENGFYPNV--ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVR 491 (583)
Q Consensus 415 ~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 491 (583)
-|++.+..--.|+. .+|-.+.......|++.-|.+.|+-.... .|++ ..++.|.-.-.+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------------------d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------------------DAQHGEALNNLAVLAAR 441 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc------------------CcchHHHHHhHHHHHhh
Confidence 99998865444443 46777877788899999999999988876 6665 889999988899
Q ss_pred hhhHHHHHHHHHHHHHcCCCCC
Q 007970 492 AAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
.|+.++|..+++.... +.|+
T Consensus 442 ~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 442 SGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred cCchHHHHHHHHHhhh--hCcc
Confidence 9999999999999874 4454
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=5.5e-08 Score=84.51 Aligned_cols=332 Identities=14% Similarity=0.084 Sum_probs=215.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHH-HHHHHHH
Q 007970 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQ-SLVAAYV 139 (583)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 139 (583)
|++.+..+.+..++++|++++....+... .+......|..+|....++..|.+.|+++... .|...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 55566666777788888888887777642 25666777777788888888888888887765 34444443 2345566
Q ss_pred cCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
+.+.+.+|+++...|.... .. ....+.+........+++..+..+.++... ..+..+.+..
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L--~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----------------en~Ad~~in~ 150 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-AL--HSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----------------ENEADGQINL 150 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HH--HHHHHHHHHHHhcccccCcchHHHHHhccC----------------CCccchhccc
Confidence 7778888888887776531 11 112223334445567888888888888762 1344455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-------------CH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA-------------NR 286 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~ 286 (583)
.-...+.|++++|.+-|+...+.+ |..| ...|+..+.. .+.++.+.|++...++++.|++. |+
T Consensus 151 gCllykegqyEaAvqkFqaAlqvs--Gyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv 226 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVS--GYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV 226 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhc--CCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence 666778999999999999998875 5655 4567766554 46789999999999999877542 11
Q ss_pred H---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007970 287 I---------------TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351 (583)
Q Consensus 287 ~---------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 351 (583)
. .+|.-...+.+.++++.|.+.+..|........|+.|...+.-.-. .+++....+-++-+...
T Consensus 227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ 305 (459)
T ss_pred hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc
Confidence 1 1222233356789999999999999766666678888777654322 34444444445555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 352 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
+ +....||..++-.||+..-++.|-+++-+-....-.-.+...|+.|=......-..++|.+-+..+.
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3 3446889999999999999999988875543210111234444433322233456777776666554
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=4.7e-11 Score=77.51 Aligned_cols=50 Identities=40% Similarity=0.781 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440 (583)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 440 (583)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=3.8e-08 Score=82.61 Aligned_cols=210 Identities=12% Similarity=0.072 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
.+...|.-.|...|+...|.+-+++..+. .+.+..+|..+...|.+.|+.+.|.+-|+...+.. +-+..+.|...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhh
Confidence 35667888999999999999999999986 45567899999999999999999999999999875 56778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 373 (583)
..+|..|++++|...|++.+.......-..+|..+..+..+.|+.+.|...|++..+.. +....+...+.....+.|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccc
Confidence 99999999999999999998866555567789999999999999999999999998873 44567788888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 433 (583)
-.|..+++..... ..++....-..|+.-.+.|+-+.+-++=..+... .|...-+..
T Consensus 190 ~~Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 190 APARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred hHHHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 9999999999874 4488888888888889999999998888777764 466555543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=1.3e-08 Score=99.10 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHh-----C--
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEF-----GA-KPDVLT-YNVMIKLCARASRKHLLVFVLERILEM-----G-- 123 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-- 123 (583)
..++..+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667999999999999999999988764 21 233333 344667888889999999999888753 2
Q ss_pred CCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCC
Q 007970 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203 (583)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (583)
.+.-..+++.|..+|.+.|++++|...++...+. +++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------------------------~~~~~----------- 317 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------------------------YEKLL----------- 317 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH------------------------------HHHhh-----------
Confidence 2223457778888899999999999988877652 22211
Q ss_pred CCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 204 LLPKTFAPN-SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD----HVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 204 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
....|. ...++.++..++..+++++|..++....+.-..-..++ ..+++.|...|...|++++|.++++.++
T Consensus 318 ---~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 318 ---GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred ---ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 001233 23456777888888889998888876655421011111 2456666666666666666666666655
Q ss_pred hCC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 279 RIG----V---PANRITYNILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 279 ~~~----~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
... . .-....++.+...|.+.+++++|.++|.+.
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 321 1 111233445555555555555555555443
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=1.5e-07 Score=92.83 Aligned_cols=262 Identities=17% Similarity=0.181 Sum_probs=186.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
-....+...|++++|++.+..-... +......+......+.+.|+.++|..++..+++.+ |.|...|..+..+..
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3445678899999999999887664 44445667778889999999999999999999987 556666777776663
Q ss_pred hc-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 298 QQ-----LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS-AGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 298 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
-. ...+...++|+++... -|.......+.-.+.....+ ..+..++..+...|+++ +|..+-..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 22 2577788888888543 24444443333333332233 34566777788888664 5666666666555
Q ss_pred CHHHHHHHHHHHhcCC-------------CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 007970 372 QPKLANKVFDEMLRDP-------------RVKVDIV--AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLA 435 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 435 (583)
..+-..+++....... .-+|... ++.-+...|...|++++|++++++.++. .|+ +..|..-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 5555555555543210 1234443 4456678888999999999999999986 565 56788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Q 007970 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 510 (583)
+.+-+.|++.+|.+.++.+... .+.. .+-+-.+..+.+.|+.++|.+++..+.+.+.
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~L------------------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEAREL------------------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhC------------------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8999999999999999999865 4444 4445556778899999999999999976554
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=9.3e-07 Score=87.09 Aligned_cols=409 Identities=11% Similarity=0.020 Sum_probs=247.2
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC-CCcchhHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG-ITLCMTTFQS 133 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 133 (583)
.-|+..|..+.-+....|+++.+.+.|++....-+ -....|+.+...+...|.-..|+.+++...... .++++..+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 34677777777777777777777777777665322 345567777777777777777777776654432 1233344433
Q ss_pred HHHHHH-cCCChHHHHHHHHHHHhhhHHHHHHH--Hhhhhcccccc-----------CCCCCCCcHHHHHhhcCCCCCCC
Q 007970 134 LVAAYV-GFGDLEIAETIVQAMREGRRDVCKII--RELDLEDYSSE-----------NEGDDDDDDEVFEKLLPNSINPS 199 (583)
Q Consensus 134 l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~ 199 (583)
.-+.|. +.+.+++++.+-.++..........+ ......+.+|. +.....++.+.+++.+.-
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~----- 473 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF----- 473 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc-----
Confidence 334443 33555555555554444111111100 01111111111 112233455566665421
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007970 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279 (583)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 279 (583)
.+.|+.+...+.--|+..++++.|.+...+..+. +...+...|..+.-.+...+++..|+.+.+....
T Consensus 474 ---------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l---~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 474 ---------DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL---NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred ---------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 1344555556666778889999999999999886 3456788899898889999999999999988775
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCCCHHHHHHHHHHH
Q 007970 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK---------------------------IEPDVVSYNILIDGF 332 (583)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~~li~~~ 332 (583)
.- +.|-.....-++.-...++.++++.....++.-.. ......++..+..-.
T Consensus 542 E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 542 EF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred Hh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 31 12222222222233335555555544433322100 000111222111111
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 333 ILIDDSAGALTFFNEMRARGIA--PT------KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~~~~--p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
... ...+..-. .+....+. |+ ...|......+.+.+..++|...+.+..+ ..+.....|......+.
T Consensus 621 a~~--~~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 621 ASQ--LKSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLE 695 (799)
T ss_pred Hhh--hhhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHH
Confidence 100 00000000 01111111 22 12345566677888999999988888876 45667778888888899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHH--HHHHHHHHhhhhhccccCCCCCCCCCCCC-HH
Q 007970 405 RMGLVEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEALL--LWKEIKERCEVKKEGVNADSDLPPPLKPD-EE 480 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 480 (583)
..|.+++|.+.|...... .| ++....++...+...|+..-|.. ++..+.+. .|+ ..
T Consensus 696 ~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------------------dp~n~e 755 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL------------------DPLNHE 755 (799)
T ss_pred HHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------------------CCCCHH
Confidence 999999999999999875 44 45688899999999998887777 88888875 554 59
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 481 LLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|..+...+.+.|+.+.|..-|....+
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999999999999999999999865
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=8.5e-08 Score=89.53 Aligned_cols=220 Identities=15% Similarity=0.035 Sum_probs=156.5
Q ss_pred CChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306 (583)
Q Consensus 227 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 306 (583)
++.+.++.-+.++.........-....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777777754211111124567888888999999999999999999875 567889999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007970 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 386 (583)
..|++.++.. +.+..+|..+..++...|++++|++.|+...+. .|+..........+...+++++|...|.+...
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 9999997642 335678888888899999999999999999886 34433222222234456789999999977654
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN---G--FYP-NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...++...+ . ......|+...+ +.+..+.+. . +.| ....|..+...+.+.|++++|+..|+++.+.
T Consensus 194 -~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 -KLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -hCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 223332222 2 233445665544 345554431 0 111 2357888999999999999999999999975
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=9.7e-08 Score=80.20 Aligned_cols=210 Identities=16% Similarity=0.070 Sum_probs=162.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
+...|.-.|...|++..|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..... +-+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34456667888888888888888887642 3445678888888888888888888888888763 34567778888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
|..|++++|...|+.............+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88889999999999888866665567788888888889999999999999988763 33456777888888889999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
..+++..... ..++...+...|+.-.+.|+-+.+-++=..+.. ..|....+...
T Consensus 193 r~~~~~~~~~-----------------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 193 RLYLERYQQR-----------------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHhc-----------------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 9998888775 357888888888888888998888777666653 45666555443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=1.1e-07 Score=92.31 Aligned_cols=307 Identities=12% Similarity=0.049 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-Ccch-hHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMGI-TLCM-TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 170 (583)
...|..+...+...++.+.+...+....+... .++. .........+...|++++|..+++...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------ 73 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY------------ 73 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------
Confidence 34566666677777888888777777665431 1222 122233445677899999999988887632
Q ss_pred ccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHhcccCC
Q 007970 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM----NEGRVSDTVRMLGAMRRQEDNA 246 (583)
Q Consensus 171 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~ 246 (583)
|.+..++.. ...+. ..+....+.+.+.... .
T Consensus 74 ---------------------------------------P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-----~ 108 (355)
T cd05804 74 ---------------------------------------PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-----P 108 (355)
T ss_pred ---------------------------------------CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC-----c
Confidence 233333332 22222 2344455555544311 1
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH--H
Q 007970 247 SHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV--V 323 (583)
Q Consensus 247 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~ 323 (583)
..|+ ......+...+...|++++|...++...+.. +.+...+..+...+...|++++|..++++........++. .
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 3333 3444556667788899999999999988875 5566778888888999999999999998886543222332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHhcCCCCCCCHHHH
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGI-APTKISY-T--TLMKAFALSSQPKLANKV---FDEMLRDPRVKVDIVAW 396 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~ 396 (583)
.|..+...+...|++++|..++++...... .+..... + .++.-+...|....+..+ .................
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH
Confidence 455677788899999999999998764322 1112111 1 223333334433322222 22111100001122223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKENGFY------P--NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~------p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.....++...|+.+.|..++..+...... . ..........++...|++++|++.+......
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788899999999999998753211 0 1112222233467899999999999988875
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.3e-06 Score=81.76 Aligned_cols=442 Identities=14% Similarity=0.081 Sum_probs=237.1
Q ss_pred CCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 007970 6 YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85 (583)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 85 (583)
.+-|...+.+=+-++.+.++ |++|+.+.+.-... ..-++..| .-+-++.+.+..++|+..++-..
T Consensus 42 ~pdd~~a~~cKvValIq~~k--y~~ALk~ikk~~~~------------~~~~~~~f-EKAYc~Yrlnk~Dealk~~~~~~ 106 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDK--YEDALKLIKKNGAL------------LVINSFFF-EKAYCEYRLNKLDEALKTLKGLD 106 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhH--HHHHHHHHHhcchh------------hhcchhhH-HHHHHHHHcccHHHHHHHHhccc
Confidence 34456778888888888888 99998554433210 01112212 22334458899999999998332
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchh-HHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHH
Q 007970 86 EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT-TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164 (583)
Q Consensus 86 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 164 (583)
+ .+..+...-...+.+.+++++|+.+|+.+.+.+...-.. .-..++.+- -...+. +.+..+....+.
T Consensus 107 ~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v~~v~e~s--- 174 (652)
T KOG2376|consen 107 R----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSVPEVPEDS--- 174 (652)
T ss_pred c----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhccCCCcch---
Confidence 2 234466666788889999999999999998765321111 111111110 000110 122221111100
Q ss_pred HHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 007970 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS-RIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243 (583)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 243 (583)
...+...+..+...|++.+|+++++.....+...-.....-..++.... ..-..|..++...|+..+|..++....+.
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~- 253 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR- 253 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-
Confidence 0111111223334566666666666552111110000000011111111 12345667788899999999999999886
Q ss_pred cCCCCCCHHHHHHHHHHHHH---cCC-hH-HHHHHHHHHHhCCC----------CCCHHHHH-HHHHHHHhcCCHHHHHH
Q 007970 244 DNASHPDHVTYTTVVSALVK---AGS-MD-RARQVLAEMTRIGV----------PANRITYN-ILLKGYCQQLQIDKAKE 307 (583)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~---~g~-~~-~a~~~~~~~~~~~~----------~~~~~~~~-~l~~~~~~~~~~~~A~~ 307 (583)
..+|........+-... ..+ ++ .++..++....... .......| .++.+| .+..+.+.+
T Consensus 254 ---~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~ 328 (652)
T KOG2376|consen 254 ---NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRE 328 (652)
T ss_pred ---cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHH
Confidence 45554333322222211 111 11 11112211111000 00111112 222222 455566666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHH-HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----
Q 007970 308 LLREMADDAKIEPDVVSYNILID-GFIL-IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD---- 381 (583)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~li~-~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---- 381 (583)
+...+ .+..|... +.+++. ++.. ...+.++.+++...-+....-........+......|+++.|.+++.
T Consensus 329 ~~a~l---p~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 329 LSASL---PGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHhC---CccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 55544 23344433 334443 3322 23477888888877765322234556666777888999999999998
Q ss_pred ----HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHhcCCHhHHHHHH
Q 007970 382 ----EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN--GFYPNVATYGSL----ANGISLARKPGEALLLW 451 (583)
Q Consensus 382 ----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l----~~~~~~~g~~~~a~~~~ 451 (583)
.+.+ +...+.+...++..+.+.++-+.|..++.+.... .-.+.......+ +..-.+.|+.++|..++
T Consensus 405 ~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4433 2233455567777888888877787777776531 011222333333 33345679999999999
Q ss_pred HHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+++.+.. ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 482 eel~k~n-----------------~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 482 EELVKFN-----------------PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhC-----------------CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999852 66779999999999876 567777766654
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=2.3e-07 Score=86.70 Aligned_cols=207 Identities=11% Similarity=0.036 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...|..+...|...|+.++|...|++..+. .+.+...|+.+...+...|+++.|...|+...+.. +.+...+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~l 138 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456888889999999999999999999885 44568899999999999999999999999999865 4467788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 372 (583)
..++...|++++|.+.|+...+. .|+..........+...+++++|...|.+.... ..|+...+ .+. ....|+
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~ 211 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGK 211 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccC
Confidence 99999999999999999999764 343322222222344567899999999776543 23333222 222 233555
Q ss_pred HHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007970 373 PKLANKVFDEMLRDPRVK-----VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 433 (583)
...+ +.+..+.+..... .....|..+...+.+.|++++|+..|++..+.+ +||..-+..
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 5444 3445554321111 124578899999999999999999999999863 345444443
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=2.7e-06 Score=82.62 Aligned_cols=309 Identities=9% Similarity=-0.031 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVL-TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
....|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|..++++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 466778888888888999998888877665432 12221 22223345667899999999999998874 445444442
Q ss_pred HHHHHcC----CChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 007970 135 VAAYVGF----GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210 (583)
Q Consensus 135 ~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (583)
...+... +....+.+.+.... ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------------------------~~~~ 111 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA---------------------------------------------------PENP 111 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC---------------------------------------------------cCCC
Confidence 2223223 33333333332210 1113
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH--H
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV-PANR--I 287 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~ 287 (583)
........+...+...|++++|.+.+++..+. .+.+...+..+..++...|++++|...++....... .++. .
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 34556667778899999999999999999986 445567788888999999999999999999887532 1232 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCCHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY-N--ILIDGFILIDDSAGALTF--FNEMRARGI--APTKISY 360 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~~~--~p~~~~~ 360 (583)
.+..+...+...|++++|..++++........+..... + .++.-+...|....+.+. +........ .......
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH
Confidence 45578888999999999999999985422211222211 1 222233333433322222 111111111 1111222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDPRV---K----VDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.....++...|+.+.|..+++.+.....- . ......-....++...|++++|.+.+.+....
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566778889999999999888652111 0 01222222334456889999999999888753
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.1e-06 Score=80.11 Aligned_cols=407 Identities=14% Similarity=0.073 Sum_probs=246.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 65 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
-++....|+++.|+.+|.+...... +|-+.|..-..+|+..|++++|++=-.+.++.. |.-+.-|+.+..++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 3455678999999999999988664 377778888889999999999988777776653 44467888999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-
Q 007970 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY- 223 (583)
Q Consensus 145 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~- 223 (583)
++|+..|.+-.+.+++.......+...-......++.-.--.++..+.....+. . ......|..++..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~---------~-~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN---------Y-SLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh---------h-hhccHHHHHHHHHhh
Confidence 999999998888777665544433222111111122222222333222110000 0 00011122222111
Q ss_pred ---------HhcCChhHHHHHHHHHH-----hccc----CCCCC------------C----------HHHHHHHHHHHHH
Q 007970 224 ---------MNEGRVSDTVRMLGAMR-----RQED----NASHP------------D----------HVTYTTVVSALVK 263 (583)
Q Consensus 224 ---------~~~g~~~~A~~~~~~~~-----~~~~----~~~~~------------~----------~~~~~~ll~~~~~ 263 (583)
.+..++..|.-.+.... ..+. .+..| | ..-...+.++..+
T Consensus 157 ~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 157 KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111111111111000 0000 00111 0 1124456667777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH-------HHHHHHHHhcC
Q 007970 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY-------NILIDGFILID 336 (583)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~~ 336 (583)
..+++.+++.+....... -+..-++....+|...|.+..+...-....+..+ ....-| ..+..+|.+.+
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 778888888888888765 4556667777788888887777766655544221 111122 22334566677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI-VAWNMLVEGYCRMGLVEEAKRI 415 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 415 (583)
+++.++..|++.......|+. ..+....+++........- +.|.. .-...-...+.+.|++..|++.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 888888888886665444332 1223334444444433321 22222 1122225677889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhh
Q 007970 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAF 494 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 494 (583)
|.++++.. +-|...|....-+|.+.|.+..|+.-.+..++. .|+. ..|.-=..++....+
T Consensus 381 YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------------------~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 381 YTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL------------------DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------------------CchHHHHHHHHHHHHHHHHH
Confidence 99999874 557888999999999999999999998888765 6664 566666677788889
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 495 FRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
|++|++.|++.++ +.|+...+...
T Consensus 442 ydkAleay~eale--~dp~~~e~~~~ 465 (539)
T KOG0548|consen 442 YDKALEAYQEALE--LDPSNAEAIDG 465 (539)
T ss_pred HHHHHHHHHHHHh--cCchhHHHHHH
Confidence 9999999999876 45666555433
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=4.5e-08 Score=89.85 Aligned_cols=257 Identities=15% Similarity=0.133 Sum_probs=168.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
++-+.-.|++..++.-.+ .... ....+......+.+++...|+.+.++ .++.+.. +|.......+...+...
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~---~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSF---SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTS---TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTS
T ss_pred HHHHHHhhhHHHHHHHhh-ccCC---CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCc
Confidence 344556788888886655 2222 12223455667788888899877544 4444433 67777776666655554
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
.+-+.+..-++..........+..........+...|++++|++++... .+.......+..+.+.++++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666666555432221123333333334566789999999888642 3667778888999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (583)
++.|.+. ..|. +...+..+++. .+.+.+|.-+|+++.+. +.+++.+.+.+..++...|++++|.+++.+..
T Consensus 154 l~~~~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 154 LKNMQQI---DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHCC---SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHhc---CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999763 2343 33334444332 34689999999998765 67889999999999999999999999999876
Q ss_pred HHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCCCCCHH
Q 007970 456 ERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFF-RKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~ 515 (583)
.. .|+ ..++..++.+....|+. +.+.+++..+.. ..|+..
T Consensus 229 ~~------------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 229 EK------------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp CC-------------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred Hh------------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 54 444 47788888888888888 778888888875 345543
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=3.5e-06 Score=73.55 Aligned_cols=293 Identities=13% Similarity=0.074 Sum_probs=197.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (583)
-+.+.+..+.+..++.+|++++..-.+.. +.+...++.|..+|....++..|...++.+-...|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~------------- 77 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL------------- 77 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-------------
Confidence 35667777888899999999998887774 4477888889999999999999999998887643322
Q ss_pred ccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH
Q 007970 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT-TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253 (583)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (583)
.-|. --...+.+.+.+.+|+++...|... |+...
T Consensus 78 ---------------------------------------~qYrlY~AQSLY~A~i~ADALrV~~~~~D~------~~L~~ 112 (459)
T KOG4340|consen 78 ---------------------------------------EQYRLYQAQSLYKACIYADALRVAFLLLDN------PALHS 112 (459)
T ss_pred ---------------------------------------HHHHHHHHHHHHHhcccHHHHHHHHHhcCC------HHHHH
Confidence 2221 2234555678888888888877542 33222
Q ss_pred HHHHHHH--HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 007970 254 YTTVVSA--LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331 (583)
Q Consensus 254 ~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 331 (583)
-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+-+|..|- ..|+.-+.
T Consensus 113 ~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALa- 187 (459)
T KOG4340|consen 113 RVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALA- 187 (459)
T ss_pred HHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHH-
Confidence 2222222 234678888888887766433 4444555555567889999999999988877776554 56666554
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHHH-------HHHhcCCHHHHHHHHHHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAP-------------TKI--------SYTTLMK-------AFALSSQPKLANKVFDEM 383 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p-------------~~~--------~~~~l~~-------~~~~~~~~~~a~~~~~~~ 383 (583)
..+.++++.|+++..+++++|++. |.. .-+.++. .+.+.++++.|.+.+..|
T Consensus 188 Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 188 HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 445688899999998888876542 211 1123333 345678888888888888
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
.-......|+.|...+.-. -..+++.+..+-++-++..+. -...||..++-.|++..-++.|-.++-+
T Consensus 268 PPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6655555677776655322 223456666666666665432 3467888888899988888887776653
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=5.4e-06 Score=73.89 Aligned_cols=329 Identities=12% Similarity=0.089 Sum_probs=200.6
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHHhCCCcchhHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI---KLCARASRKHLLVFVLERILEMGITLCMTTF 131 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 131 (583)
+.++.-.-.+...+...|++.+|+.-|....+ -|+..|.++. ..|...|+...|+.=+.+.++. +||-..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A 108 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH
Confidence 34566667777888888888888888888876 3344444433 4666777777777777777775 4553221
Q ss_pred H-HHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 007970 132 Q-SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210 (583)
Q Consensus 132 ~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (583)
. .-...+.+.|.++.|..=|+.+....+..... .+..+++. ..
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~--------------------~eaqskl~----------------~~ 152 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV--------------------LEAQSKLA----------------LI 152 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh--------------------HHHHHHHH----------------hH
Confidence 1 22345677888888888888777644321111 11111111 00
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.........+..+.-.|+...|+.....+.+. .+-|...+..-..+|...|++..|+.-++...+.. ..+...+-
T Consensus 153 ~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~y 227 (504)
T KOG0624|consen 153 QEHWVLVQQLKSASGSGDCQNAIEMITHLLEI----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHY 227 (504)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHH
Confidence 11122334555666778888888888888774 44466667777778888888888887777776654 33455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 370 (583)
-+-..+...|+.+.++..+++.++. .||...+-.. | ....+..+.++.|.+ ....
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~ 282 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEE 282 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhh
Confidence 6667777788888888877777653 4554322111 1 112222222222222 2334
Q ss_pred CCHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHH
Q 007970 371 SQPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGEA 447 (583)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a 447 (583)
+++.++.+..+.+++...- +.....+..+-.++...|++.+|++.-.+.++. .|| +.++.--..+|.-...++.|
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHH
Confidence 5566666666666652110 011223445556677778888888888888763 444 67777777888878888888
Q ss_pred HHHHHHHHHH
Q 007970 448 LLLWKEIKER 457 (583)
Q Consensus 448 ~~~~~~~~~~ 457 (583)
+.-|+.+.+.
T Consensus 361 I~dye~A~e~ 370 (504)
T KOG0624|consen 361 IHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhc
Confidence 8888887765
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.9e-05 Score=73.79 Aligned_cols=402 Identities=15% Similarity=0.123 Sum_probs=236.6
Q ss_pred HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-HHHH
Q 007970 18 SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD-VLTY 96 (583)
Q Consensus 18 ~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ 96 (583)
.+....|+ ++.|+..|-..+.. -|+|-+.|..-..+|+..|++++|++=-.+-.+. .|+ ...|
T Consensus 10 naa~s~~d--~~~ai~~~t~ai~l------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy 73 (539)
T KOG0548|consen 10 NAAFSSGD--FETAIRLFTEAIML------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGY 73 (539)
T ss_pred Hhhccccc--HHHHHHHHHHHHcc------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHH
Confidence 34455676 99999999888763 4668889999999999999999998877777764 455 5678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh---HHHHHHHHHHHh--------hhHHHHHHH
Q 007970 97 NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL---EIAETIVQAMRE--------GRRDVCKII 165 (583)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~--------~~~~~~~~~ 165 (583)
.-...++.-.|++++|+..|.+-++.. +.|...+..|..++...... -.--.++..+.. .++.+....
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 888889999999999999999988875 56777777787777211000 000000011000 001111111
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhc--------CCCCCC---CCCC-CCCCCCCCC--C----------HHHHHHHHH
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLL--------PNSINP---SSEP-PLLPKTFAP--N----------SRIYTTLMK 221 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~---~~~~-~~~~~~~~~--~----------~~~~~~li~ 221 (583)
..+...-.....-...+.-....-.+. ..+..+ ...+ .-...++++ + ..-.-.+.+
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 000000000000000111111111111 000000 0000 000011111 1 113456778
Q ss_pred HHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH-------HHH
Q 007970 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI-------LLK 294 (583)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~ 294 (583)
+..+..++..|++-+...... .-+..-++....++...|.+..+...-....+.|.. ....++. +..
T Consensus 233 aaykkk~f~~a~q~y~~a~el-----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALEL-----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhH-----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 888889999999999998874 345555666777888889888888777777766522 2223333 333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK-ISYTTLMKAFALSSQP 373 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~ 373 (583)
+|.+.++++.|+..|.+.+.... .|+. ..+....+++........-. .|.. .-...-...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~R-t~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHR-TPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhc-CHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCH
Confidence 56667889999999988766432 2332 12233344444444443332 2221 1122224556777888
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
..|...|.++++ ..|.|...|.....+|.+.|.+..|++=.+...+.. ++....|..=..++....++++|++.|.+
T Consensus 375 ~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 346677788888888888888888888777777652 22334444445556667778888888887
Q ss_pred HHHH
Q 007970 454 IKER 457 (583)
Q Consensus 454 ~~~~ 457 (583)
..+.
T Consensus 452 ale~ 455 (539)
T KOG0548|consen 452 ALEL 455 (539)
T ss_pred HHhc
Confidence 7765
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=1.3e-06 Score=85.60 Aligned_cols=225 Identities=13% Similarity=0.091 Sum_probs=182.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 007970 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
+++|-...-..+...+...|-..+|+.+|++.. .|.-++.+|...|+..+|..+..+..+. +|+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ 458 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPR 458 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcch
Confidence 345556666778889999999999999998764 3677888999999999999999988873 78999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
.|..+.+......-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 9999888887777899999998876431 11112222344789999999999877753 44677888888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
.+.+++..|.+.|..... ..+-+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-...+.|.+++|
T Consensus 530 Lqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 899999999999999876 566778899999999999999999999999999876 44566777778888899999999
Q ss_pred HHHHHHHHHHh
Q 007970 448 LLLWKEIKERC 458 (583)
Q Consensus 448 ~~~~~~~~~~~ 458 (583)
++.+.++....
T Consensus 607 ~~A~~rll~~~ 617 (777)
T KOG1128|consen 607 IKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHhh
Confidence 99999988753
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=6e-06 Score=83.74 Aligned_cols=479 Identities=12% Similarity=-0.003 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
..|..+...|+..-+ ...|...|++..+. .+.+..++......|+...+++.|..+.-...+....
T Consensus 493 paf~~LG~iYrd~~D--m~RA~kCf~KAFeL------------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a 558 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDD--MKRAKKCFDKAFEL------------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA 558 (1238)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhcC------------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence 366677777766654 77788888777653 3446778888999999999999998884443332110
Q ss_pred -CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007970 91 -PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 91 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 169 (583)
.-...|....-.|...++...++.-|+...... |-|...|..+..+|.+.|++..|.++|.+....+|.........
T Consensus 559 ~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~- 636 (1238)
T KOG1127|consen 559 FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKE- 636 (1238)
T ss_pred HHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHH-
Confidence 011223334445567788888998888888875 66888999999999999999999999988877766554332222
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-------Hhc
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM-------RRQ 242 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~ 242 (583)
+......|.+.++...+..++...-.. ..+...-..++-.+...+.-.|-...|...++.. ...
T Consensus 637 --A~~ecd~GkYkeald~l~~ii~~~s~e-------~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 637 --AVMECDNGKYKEALDALGLIIYAFSLE-------RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred --HHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 223345678888888887765221000 0000011223333333333333333333333332 222
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCChH------HHHHHH-HHHHhCCCCC--------------------CHHHHHHHHHH
Q 007970 243 EDNASHPDHVTYTTVVSALVKAGSMD------RARQVL-AEMTRIGVPA--------------------NRITYNILLKG 295 (583)
Q Consensus 243 ~~~~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~-~~~~~~~~~~--------------------~~~~~~~l~~~ 295 (583)
....+...|..+-.+|.-.-..+ ....++ .+....+..+ +..+|..|+..
T Consensus 708 ---~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 708 ---SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred ---hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 11223333433333332111111 000111 1111111111 11222222222
Q ss_pred HHh----c----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 296 YCQ----Q----LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 296 ~~~----~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
|.+ . .+...|...+.+.++.. ..+..+|+.|... ...|.+.-+...|-+-.... +....+|..+.-.+
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeE
Confidence 222 1 12235555565554421 2344555555443 44455555555555544432 33455666666667
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCC
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK----ENGFYPNVATYGSLANGISLARK 443 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~p~~~~~~~l~~~~~~~g~ 443 (583)
.+..+++.|...|...+. -.+.+...|-.........|+.-++..+|..-- ..|--|+..-|-+........|+
T Consensus 861 l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 778888888888888765 455666777766666667788888888777622 22334555555555555566777
Q ss_pred HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 007970 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE-HGIPPNKTKYKKIY 521 (583)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~~~ 521 (583)
.++-+...+.+.........-. .-.|+ ...|.......-+.+.+++|......... ....-+...|+.+
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf--------~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva- 1009 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYF--------LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA- 1009 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHH--------hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-
Confidence 6665544433322210000000 11444 47888888888888988888888777631 1123344445543
Q ss_pred HHhhhhhhccc
Q 007970 522 VEMHSRMFTSK 532 (583)
Q Consensus 522 ~~~l~~~~~~~ 532 (583)
...++|.+.++
T Consensus 1010 k~~~gRL~lsl 1020 (1238)
T KOG1127|consen 1010 KPDAGRLELSL 1020 (1238)
T ss_pred hhhhhhhhhhh
Confidence 44555555554
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=3.6e-06 Score=88.20 Aligned_cols=230 Identities=10% Similarity=0.080 Sum_probs=185.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 007970 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-----HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283 (583)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (583)
.|.+...|-..|......++.+.|.++.+++... +.+. ...|.++++.-...|.-+...++|+++.+..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t----IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT----INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh----CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--
Confidence 3556788999999999999999999999999875 4333 2468888888888898899999999998863
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT---KISY 360 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~ 360 (583)
.....|..|...|.+.+++++|.++++.|.+.-+ .....|...+..+.+..+-+.|..++++..+. -|. ....
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFI 1603 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHH
Confidence 3456788999999999999999999999998654 56778999999999999999999999998875 233 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA--TYGSLANGI 438 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~ 438 (583)
.-.+..-.+.|+.+.+..+|+.+.. ..|.....|+.+|+.-.++|+.+.+..+|++....++.|-.. .|...+..=
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 4555566789999999999999987 456678899999999999999999999999999988776543 444444443
Q ss_pred HhcCCHhHHHHH
Q 007970 439 SLARKPGEALLL 450 (583)
Q Consensus 439 ~~~g~~~~a~~~ 450 (583)
-..|+-+.+..+
T Consensus 1682 k~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYV 1693 (1710)
T ss_pred HhcCchhhHHHH
Confidence 445655544443
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=2.3e-05 Score=86.50 Aligned_cols=275 Identities=13% Similarity=0.031 Sum_probs=178.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC---CC--CHHHH
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD----HVTYTTVVSALVKAGSMDRARQVLAEMTRIGV---PA--NRITY 289 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~ 289 (583)
+...+...|++++|...++...... ...+ ......+...+...|+++.|...+.+.....- .+ .....
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAEL---PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 4456678999999999999887631 1112 12345566667789999999999988774311 11 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHH
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADD---AKIE--P-DVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAP--TKIS 359 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~ 359 (583)
..+...+...|+++.|...+++.... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 56677788999999999998876542 1111 1 22334455556777899999999998875531 112 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVA--WNMLVEGYCRMGLVEEAKRIIERMKENGFYPN---VATY 431 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~ 431 (583)
+..+.......|++++|...+...... .+....... ....+..+...|+.+.|.+++........... ...+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 444566777899999999988887431 111111101 11122445568999999999877653211111 1113
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
..+..++...|++++|...++++....... +..++ ..++..+..++.+.|+.++|...+.+..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~------------g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSL------------RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456667888999999999999988753210 12222 256677788999999999999999999763
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=2.4e-05 Score=86.39 Aligned_cols=243 Identities=12% Similarity=0.107 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC--C-C
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD--HVTYTTVVSALVKAGSMDRARQVLAEMTRI----GVP--A-N 285 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~ 285 (583)
+.+.+...+...|++++|...+.+........-.+. ..++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 456677778889999999999988765321111111 234555667788899999999998886642 211 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDAK-IEP--DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP-TKISY- 360 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~- 360 (583)
...+..+...+...|++++|...+.+...... ..+ ....+..+...+...|+++.|...+.......... ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 23445566677788999999999887754211 112 23344455667788999999999998875421111 11111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 007970 361 ----TTLMKAFALSSQPKLANKVFDEMLRDPRVKVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYPN-V 428 (583)
Q Consensus 361 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~ 428 (583)
...+..+...|+.+.|..++...... ..... ...+..+..++...|++++|...+.+.... |..++ .
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11223445578999999998776542 11111 112456677888999999999999988652 32222 2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.+...+..++...|+.++|...+.++.+..
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 356666777889999999999999998863
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=8.8e-05 Score=74.01 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=115.4
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----------HHhC---------CC
Q 007970 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI----------LEMG---------IT 125 (583)
Q Consensus 65 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~~---------~~ 125 (583)
=..|-..|.+++|+++-+.=-...+ ..||..-..-+...++.+.|++.|++. +... -.
T Consensus 833 NKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 3344445555555555443222111 224444444455556666666655532 1111 01
Q ss_pred cchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCC
Q 007970 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205 (583)
Q Consensus 126 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (583)
.+...|.--...+-..|+.+.|+.+|.....- ...-...+-+|+.++|.++-++
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~-----------fs~VrI~C~qGk~~kAa~iA~e--------------- 963 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDY-----------FSMVRIKCIQGKTDKAARIAEE--------------- 963 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhh-----------hhheeeEeeccCchHHHHHHHh---------------
Confidence 12233333333344456666666666555431 1112233455666666666655
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-------------cC--ChHHH
Q 007970 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-------------AG--SMDRA 270 (583)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g--~~~~a 270 (583)
..|..+...+.+.|-..|++.+|...|.+... |...|..|-. +| +.-.|
T Consensus 964 ----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa------------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 964 ----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA------------FSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred ----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH------------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 35777888899999999999999999887654 2233333222 22 12223
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR---------EMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
-.+|++. |. .....+..|-+.|.+.+|+++-- -+.+......|+...+.....++...++++|
T Consensus 1028 ArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1028 ARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred HHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 3333321 11 11223345666777776665421 1222222234556666666666667777776
Q ss_pred HHHHHH
Q 007970 342 LTFFNE 347 (583)
Q Consensus 342 ~~~~~~ 347 (583)
..++-.
T Consensus 1100 V~lL~~ 1105 (1416)
T KOG3617|consen 1100 VNLLCL 1105 (1416)
T ss_pred HHHHHH
Confidence 665543
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=4.1e-05 Score=77.95 Aligned_cols=423 Identities=11% Similarity=0.024 Sum_probs=244.9
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHH
Q 007970 73 KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152 (583)
Q Consensus 73 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 152 (583)
+...|+..|-+..+... -=...|..|...|+...+...|...|....+.+ ..+......+...|.+..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35666666666555322 124568888888988888999999999999886 5677888899999999999999999944
Q ss_pred HHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 007970 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (583)
...+..+-.. ....+...+..|...++...+...|+..+ +..|.|...|..+..+|..+|++..|
T Consensus 551 ~~~qka~a~~-~k~nW~~rG~yyLea~n~h~aV~~fQsAL--------------R~dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 551 RAAQKAPAFA-CKENWVQRGPYYLEAHNLHGAVCEFQSAL--------------RTDPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHhhhchHHH-HHhhhhhccccccCccchhhHHHHHHHHh--------------cCCchhHHHHHHHHHHHHhcCceehH
Confidence 3333222111 12223337788889999999999999998 34477899999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCH--
Q 007970 233 VRMLGAMRRQEDNASHPDHVTYTTV--VSALVKAGSMDRARQVLAEMTRIG------VPANRITYNILLKGYCQQLQI-- 302 (583)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~-- 302 (583)
+++|.+... +.|+. +|... ...-+..|.+.++...+......- ..--..++..+...+.-.|-.
T Consensus 616 lKvF~kAs~-----LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 616 LKVFTKASL-----LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred HHhhhhhHh-----cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 999999876 45543 22222 223356788999988888776421 111122222222223223333
Q ss_pred -----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cC--CH-HHHHHH-HHHHHHCCCCC---------------
Q 007970 303 -----DKAKELLREMADDAKIEPDVVSYNILIDGFIL---ID--DS-AGALTF-FNEMRARGIAP--------------- 355 (583)
Q Consensus 303 -----~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~--~~-~~a~~~-~~~m~~~~~~p--------------- 355 (583)
+++++.|.-.+... ...+...|-.+-.+|.- .. -+ .....+ +.+....+.-|
T Consensus 690 avd~~eksie~f~~~l~h~-~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHS-LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHh-hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 33333333332211 01222233222222110 00 00 000001 11111111111
Q ss_pred -----CHHHHHHHHHHHHh----cC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 356 -----TKISYTTLMKAFAL----SS----QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 356 -----~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
+..+|..++..|.+ .+ +...|...+++.++ -...+..+|+.|.-. ...|++.-|.--|-+-...
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 12222222222221 11 22356666666555 234456667666544 4456666666666555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHH
Q 007970 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEI 501 (583)
Q Consensus 423 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 501 (583)
.+....+|..+...+....+++-|...|...+. +.|+. ..|..........|+.-++..+
T Consensus 846 -ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS------------------LdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 846 -EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS------------------LDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred -cccchhheeccceeEEecccHHHhhHHHHhhhh------------------cCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 233556677777777777888888888887764 36654 6666666666677877777777
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007970 502 VACMEE----HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 502 ~~~~~~----~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 559 (583)
|..--+ .|-.|+-.-|.+. .+..... |.+++-+.-.++++
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~-te~h~~N-----------------g~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCA-TEIHLQN-----------------GNIEESINTARKIS 950 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHH-HHHHHhc-----------------cchHHHHHHhhhhh
Confidence 777321 3444555444444 3333332 66666666666654
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=1.2e-07 Score=87.02 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV-EEAKRI 415 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~ 415 (583)
.+.+|.-+|+++... ..++..+.+.+..++...|++++|.+++..... ..+.+..+...++.+....|+. +.+.++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 344555555554332 334444455555555555555555555555443 2223334444444444444444 334444
Q ss_pred HHHHHH
Q 007970 416 IERMKE 421 (583)
Q Consensus 416 ~~~~~~ 421 (583)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 444443
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=1.6e-05 Score=77.92 Aligned_cols=344 Identities=13% Similarity=0.109 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (583)
...-.+-+.++...|+-++|-++-+ .+..++ +.|+.|.+.|..-.|.+....-.. +..|......+..+
T Consensus 589 eklk~sy~q~l~dt~qd~ka~elk~--------sdgd~l-aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~a 657 (1636)
T KOG3616|consen 589 EKLKRSYLQALMDTGQDEKAAELKE--------SDGDGL-AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAA 657 (1636)
T ss_pred HHHHHHHHHHHHhcCchhhhhhhcc--------ccCccH-HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHH
Confidence 3344555667777787777655421 122222 357778888888777665432222 23355555555555
Q ss_pred HHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH-
Q 007970 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY- 216 (583)
Q Consensus 138 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (583)
+.+..-+++|-.+|+++...+..+. ++.+..-+-.|+++-.-.. |..++..
T Consensus 658 lik~elydkagdlfeki~d~dkale-----------~fkkgdaf~kaielarfaf-----------------p~evv~le 709 (1636)
T KOG3616|consen 658 LIKGELYDKAGDLFEKIHDFDKALE-----------CFKKGDAFGKAIELARFAF-----------------PEEVVKLE 709 (1636)
T ss_pred HHhhHHHHhhhhHHHHhhCHHHHHH-----------HHHcccHHHHHHHHHHhhC-----------------cHHHhhHH
Confidence 5555555666666655543211110 0111111122222222221 2222222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
......+...|+++.|...|-+... ....+.+......+.+|+.+++.+.... .-...|..+...|
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~------------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhy 775 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANC------------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHY 775 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhh------------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHh
Confidence 2334556667888888777655432 2345667777889999999999888764 3345677888999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 376 (583)
...|+++.|+++|.+.- .++-.|..|.+.|+|+.|.++-.+.. |.......|..-..-+-..|++.+|
T Consensus 776 an~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 776 ANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred ccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhh
Confidence 99999999999996552 24556788999999999988865543 4444566676667778889999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
.++|-.+.. |+. .|..|-++|..+..+++..+-.-. .-..|...+..-|-..|+...|...|-++.+
T Consensus 844 eqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 844 EQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 999876643 553 467899999999999888764311 1134666777778889999998887766543
Q ss_pred HhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
|.+.++.|...+.|++|.++-+.
T Consensus 911 -------------------------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 911 -------------------------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred -------------------------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 55667788888888888877654
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=9.3e-05 Score=66.29 Aligned_cols=310 Identities=15% Similarity=0.101 Sum_probs=166.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 007970 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210 (583)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (583)
.-.|.+.+...|++..|+.-|....+.+|+.-.. +...+..|...|+...|+.-+.+++. ..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~a---ifrRaT~yLAmGksk~al~Dl~rVle---------------lK 102 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQA---IFRRATVYLAMGKSKAALQDLSRVLE---------------LK 102 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHH---HHHHHHHHhhhcCCccchhhHHHHHh---------------cC
Confidence 3345555666677777777776666654432221 11223334444444455555554441 23
Q ss_pred CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 211 PNSR-IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 211 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
||-. +-..-...+.+.|.++.|..-|+.+.+. .|+..+ ...+..+.--.++-. ..
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~-----~~s~~~---~~eaqskl~~~~e~~----------------~l 158 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQH-----EPSNGL---VLEAQSKLALIQEHW----------------VL 158 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc-----CCCcch---hHHHHHHHHhHHHHH----------------HH
Confidence 4422 2233345566677777777777776664 121100 000000000000000 01
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
...+..+...|+...|+..+..+++.. +-|...|..-..+|...|++..|+.-++...+.. .-+..++--+-..+..
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHh
Confidence 112223344556666666665555321 3344555555556666666666665555554442 2233344444444555
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHH----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HH---HH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVA----WNML---------VEGYCRMGLVEEAKRIIERMKENGFYPN--VA---TY 431 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~---~~ 431 (583)
.|+.+.++....+..+ +.|+... |..| +....+.++|.++++..+...+. .|. .. .+
T Consensus 236 vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGF 310 (504)
T ss_pred hhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeee
Confidence 5555555555544443 2233211 1111 12345567888888888887765 343 22 23
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
..+-.++...|++.+|++...+.... .|+ ..++.--..+|.-..++++|+.-|++..+.
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~------------------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDI------------------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhc------------------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44445567789999999999999864 776 588888999999999999999999999863
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=7e-07 Score=85.15 Aligned_cols=223 Identities=15% Similarity=0.118 Sum_probs=171.6
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339 (583)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 339 (583)
-+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++.++.. +.+......|...|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3567888999999999888775 5677888888888888888888888888887532 446677888888888888888
Q ss_pred HHHHHHHHHHHCCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007970 340 GALTFFNEMRARGIA-----P---TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (583)
.|+..+..-+....+ + +...-.. ..+..........++|-.+....+..+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888876554211 0 0000000 11222233445666676666655656888889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHH
Q 007970 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICV 490 (583)
Q Consensus 412 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 490 (583)
|++.|+.++... +-|...||.|...++...+.++|+..|.++++. +|+. +....|.-.|.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------------------qP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL------------------QPGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------------------CCCeeeeehhhhhhhh
Confidence 999999999752 336678999999999999999999999999964 9986 78888999999
Q ss_pred hhhhHHHHHHHHHHHH
Q 007970 491 RAAFFRKALEIVACME 506 (583)
Q Consensus 491 ~~g~~~~A~~~~~~~~ 506 (583)
..|.|++|.+.|-..+
T Consensus 510 NlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 9999999999988864
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=9.1e-05 Score=75.53 Aligned_cols=365 Identities=15% Similarity=0.150 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK--PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
|+..-+..+.++...+-..+-+++++++.-.+-. -+...-|.||-...+. +..+..+..+++..-+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence 5566667888999999999999999998743111 1122234444433333 5556667777665543 222 3
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
...+...+-+++|..+|++......-....+. .-+.++.|.+.-+++ ..+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie----------~i~~ldRA~efAe~~-------------------n~p~ 1105 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE----------NIGSLDRAYEFAERC-------------------NEPA 1105 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH----------HhhhHHHHHHHHHhh-------------------CChH
Confidence 44555667778888887765442222111111 123344455555543 3466
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
+|..+..+..+.|.+.+|++-|-+. .|+..|..+++.+.+.|.+++-.+.+....+..-.|. +-+.|+-
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika---------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~ 1174 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIF 1174 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHH
Confidence 7888889988999988888776433 2556788889999999999988888887777654444 3456788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------CCC
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR--------------------GIA 354 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~ 354 (583)
+|++.+++.+.++++. -|+......+..-|...+.++.|.-+|...... .-.
T Consensus 1175 AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888877666541 244444444444455555555444443321100 001
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 434 (583)
.+..||-.+..+|...+.+..|.-. ..++-....-..-++..|-..|-+++.+.+++..+.. -......|..|
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQiC------GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQIC------GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTEL 1319 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHHhc------CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHH
Confidence 1334444444444443333322111 0111223333445555566666666665555554321 01223344444
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.-.|++- ++++..+.++-...+ .| .--++++|-.+.-|.+..-++.+..+
T Consensus 1320 aiLYsky-kp~km~EHl~LFwsR-------------------vN---ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHLKLFWSR-------------------VN---IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHhc-CHHHHHHHHHHHHHh-------------------cc---hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444432 344444444433322 11 22357778777778877777766543
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00016 Score=68.83 Aligned_cols=429 Identities=12% Similarity=0.114 Sum_probs=256.2
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
+-|..+|+.+|+-+... . .+++...++++..- .|-....|..-|..-.+.++++...++|.....
T Consensus 17 P~di~sw~~lire~qt~-~--~~~~R~~YEq~~~~------------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-P--IDKVRETYEQLVNV------------FPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred CccHHHHHHHHHHHccC-C--HHHHHHHHHHHhcc------------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34788999999988665 5 99999999999863 555778999999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CChhH----HHHHHHHHH-HhCCCc-chhHHHHHHHH---------HHcCCChHHHHHH
Q 007970 87 FGAKPDVLTYNVMIKLCARA-SRKHL----LVFVLERIL-EMGITL-CMTTFQSLVAA---------YVGFGDLEIAETI 150 (583)
Q Consensus 87 ~~~~~~~~~~~~li~~~~~~-~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~ 150 (583)
.- .+...|..-|.--.+. +.... ..+.|+-.. +.|+.+ +...|+.-+.. +....+++...++
T Consensus 82 kv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRri 159 (656)
T KOG1914|consen 82 KV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRI 159 (656)
T ss_pred HH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHH
Confidence 53 3566677666643332 33322 223333322 334222 22344444432 3344577777777
Q ss_pred HHHHHhhhH--------HHHHHHHhh---hhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCC----HHH
Q 007970 151 VQAMREGRR--------DVCKIIREL---DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN----SRI 215 (583)
Q Consensus 151 ~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 215 (583)
++++..... +...+-..+ ......-.....+..|.++++++.+---......+.++....++ ...
T Consensus 160 Yqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 160 YQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVEL 239 (656)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHH
Confidence 777654321 111111111 11122233445555677777766422111111111111111111 112
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHHHhcccCCCCCCHHH----HH-HHHHHHHHcCC-------hHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRV--------SDTVRMLGAMRRQEDNASHPDHVT----YT-TVVSALVKAGS-------MDRARQVLA 275 (583)
Q Consensus 216 ~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~----~~-~ll~~~~~~g~-------~~~a~~~~~ 275 (583)
|-.+|..=-..+-- ....=++++....- +..|+... |. ..-+.+...|+ -+++..+++
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l--~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yE 317 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL--GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYE 317 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHH
Confidence 43344322111110 01111222222210 12232211 00 11112333343 456666676
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007970 276 EMTRIGVPANRITYNILLKGYCQQL---QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 352 (583)
.....-..-+..+|..+...--..- ..+.....+++++....+.|+ .+|-..+..-.+..-...|..+|.++.+.+
T Consensus 318 r~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~ 396 (656)
T KOG1914|consen 318 RAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDK 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 6655333334444444433222222 366777778777665555555 467777787788888999999999999988
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H
Q 007970 353 IAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV--A 429 (583)
Q Consensus 353 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~ 429 (583)
..+ +....++++..++ .++..-|..+|+.-.+.++ .++..-...+.-+...++-..|..+|++.+..++.|+. .
T Consensus 397 r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 397 RTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred CCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 777 6777788888665 5788999999998887543 44555567788888999999999999999988666654 6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.|..++.-=+.-|+...++++-++.....
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 89999988889999999999988887664
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.76 E-value=5.8e-05 Score=74.27 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=68.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Q 007970 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408 (583)
Q Consensus 329 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 408 (583)
+.+-.....|.+|+.+++.+...+. -..-|..+...|+..|+++.|.++|.+.-. ++-.|..|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhcccc
Confidence 3444566777888888877776532 334566777788888888888888765422 3445677888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
|+.|.++-.+.. |.......|..-..-+-.+|++.+|.++|
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 888877766653 22223334444444455666666655554
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.3e-06 Score=81.75 Aligned_cols=259 Identities=15% Similarity=0.078 Sum_probs=187.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007970 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300 (583)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 300 (583)
.-+.+.|++.+|.=.|+...+. -+-+...|..|.......++-..|+..+.+..+.. +-|....-.|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 4566889999999999998886 45568899999999999999899999999999876 667888888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhc
Q 007970 301 QIDKAKELLREMADDAKIEPDVVSYNILI---------DGFILIDDSAGALTFFNEM-RARGIAPTKISYTTLMKAFALS 370 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~ 370 (583)
.-..|+..++..+... |.. .|.... ..+.....+....++|-++ ...+..+|+.....|.-.|--.
T Consensus 368 ~q~~Al~~L~~Wi~~~---p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNK---PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hHHHHHHHHHHHHHhC---ccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 9999999998886532 110 000000 0111122233444555444 4455457788888888888899
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHH
Q 007970 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV-ATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 449 (583)
|++++|...|+.+++ --|-|..+||.|...++...+.++|+..|++.++. .|.- .+.-.|.-+|...|.+++|.+
T Consensus 444 ~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred hHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999999987 34567889999999999999999999999999984 6664 356668888999999999999
Q ss_pred HHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHH
Q 007970 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499 (583)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 499 (583)
.|-.++.-......+.. .-.++..+|.+|=.++.-.++.+-+.
T Consensus 520 hlL~AL~mq~ks~~~~~-------~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNK-------APMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHhhhccccccc-------CCcchHHHHHHHHHHHHHcCCchHHH
Confidence 99887765321100000 01224456666555555555555333
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=2.7e-06 Score=83.43 Aligned_cols=242 Identities=12% Similarity=0.032 Sum_probs=190.9
Q ss_pred ccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHH
Q 007970 52 SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131 (583)
Q Consensus 52 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 131 (583)
...+|-...-..+...+...|-...|..+|+.+.- |.-+|.+|...|+..+|..+..+..++ +|++..|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 45667777777889999999999999999998764 667888999999999999999888883 7899999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 007970 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211 (583)
Q Consensus 132 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (583)
..+.+......-+++|.++++....+ ... ..+......++++++.+.|+.-+ .-.+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar------A~r---~~~~~~~~~~~fs~~~~hle~sl--------------~~npl 517 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR------AQR---SLALLILSNKDFSEADKHLERSL--------------EINPL 517 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH------HHH---hhccccccchhHHHHHHHHHHHh--------------hcCcc
Confidence 99999988888899999998876553 111 11223345788888999988766 22345
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
...+|..+..+..+.+++..|.+.|...... -+-+...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|..
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWEN 592 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWEN 592 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeec
Confidence 6788999999999999999999999998873 33346789999999999999999999999999887 556677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 332 (583)
.+....+.|.+++|.+.+.++........|......++...
T Consensus 593 ymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 593 YMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 88888999999999999988876444344555555544433
No 109
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=1.9e-05 Score=73.66 Aligned_cols=216 Identities=10% Similarity=0.053 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHCCC
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG-KPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~ 89 (583)
.++..+-..+...++ .++|+.+++++++. .|-+..+|+..-.++...| ++++++..++.+.+.+.
T Consensus 38 ~a~~~~ra~l~~~e~--serAL~lt~~aI~l------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 38 EAMDYFRAVYASDER--SPRALDLTADVIRL------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHH------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 356666677777777 89999999999884 3445678888877888888 67999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHh
Q 007970 90 KPDVLTYNVMIKLCARASRK--HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
.+..+|+.....+.+.++. +.++++++.+++.+ +-|..+|+...-++...|+++++++.++.+.+.+
T Consensus 104 -knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------- 172 (320)
T PLN02789 104 -KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------- 172 (320)
T ss_pred -cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---------
Confidence 3556677666566666653 67888998999886 6688899999899999999999999999988743
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHH
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE---GRV----SDTVRMLGAMR 240 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~~~ 240 (583)
+.+..+|+....++.+. |.. +++++....+.
T Consensus 173 ------------------------------------------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 173 ------------------------------------------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred ------------------------------------------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 35566666665555444 222 45667776666
Q ss_pred hcccCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007970 241 RQEDNASHPDHVTYTTVVSALVKA----GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298 (583)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (583)
.. .+-|...|+.+...+... +...+|.+.+.+..+.+ +.+......|+..|+.
T Consensus 211 ~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 211 LA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred Hh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 64 445677788887777663 34456878877776654 4567777788888875
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2e-08 Score=58.26 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=31.8
Q ss_pred CCCCCchHHHHHHHHHHHhcCCCChhhhHHhHHHH
Q 007970 4 SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVV 38 (583)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~ 38 (583)
+|+.||+.|||.+|.+|++.|+ +++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~--~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGR--VDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCC--HHHHHHHHHhC
Confidence 5899999999999999999999 99999999987
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=0.00041 Score=69.47 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=122.2
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
+-..|..+.+.|.+..+ .+-|...+-.|...-+-. .. ...--.|+ ..-..........|.+++|..+|.+-..
T Consensus 756 S~~vW~nmA~McVkT~R--LDVAkVClGhm~~aRgaR-Al-R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRR--LDVAKVCLGHMKNARGAR-AL-RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhcc--ccHHHHhhhhhhhhhhHH-HH-HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 34567888888888777 666655554443210000 00 00001121 1222233344577888888888887765
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhh
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 168 (583)
|..|=+.|-..|.+++|.++-+.-....+ ..||..-..-+-..++.+.|++.|++......++..++...
T Consensus 829 -------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 829 -------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred -------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 33344556667888888877665433221 23555555555666777778777776544322222221111
Q ss_pred hhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCC
Q 007970 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248 (583)
Q Consensus 169 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 248 (583)
..+++.|-+- ..|...|.-...-+-..|+.+.|+.+|...+.
T Consensus 899 -------------p~~~e~Yv~~------------------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 899 -------------PKQIEQYVRR------------------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred -------------hHHHHHHHHh------------------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 0111111110 12333333333334445666666666655543
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 249 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
|..++...+-.|+.++|-++-++ . -|...+-.|.+.|-..|++.+|...|.+.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44455555566666666665543 1 24445555666666666666666666554
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=2.7e-05 Score=81.99 Aligned_cols=223 Identities=12% Similarity=0.117 Sum_probs=175.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV---VSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~ 343 (583)
.+.|..+-+.++.. |.+...|-..|......++.++|.+++++++..-++.... ..|.+++..-..-|.-+...+
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 33455544444442 5567788889999999999999999999998643332222 356666666666677888899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
+|+++.+.. -....|..|...|.+.+..++|.++++.|.++++ -....|..++..+.+..+-+.|.+++.++++.
T Consensus 1519 VFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1519 VFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 999998752 2356788999999999999999999999999655 56788999999999999999999999999874
Q ss_pred CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHH
Q 007970 424 FYPN---VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKAL 499 (583)
Q Consensus 424 ~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 499 (583)
-|. .....-.+..-.+.|+.+++..+|+..... .|- ...|+..++.=.+.|+.+.+.
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a------------------yPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA------------------YPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------------------CccchhHHHHHHHHHHccCCHHHHH
Confidence 344 334444455567899999999999999876 444 489999999999999999999
Q ss_pred HHHHHHHHcCCCCCHH
Q 007970 500 EIVACMEEHGIPPNKT 515 (583)
Q Consensus 500 ~~~~~~~~~~~~p~~~ 515 (583)
.+|+.....++.|-..
T Consensus 1655 ~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHHHhcCCChhHh
Confidence 9999999888877654
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.0005 Score=70.42 Aligned_cols=197 Identities=9% Similarity=0.059 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
+.||-+|++.++..+.++++ .-|+......+.+-|...+.++.|.-+|.. ..-|..|...+
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi----------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFI----------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHh----------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHH
Confidence 34555555555555443332 234444455555555555555555555432 22345555556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 376 (583)
...|+++.|...-++. .+..+|..+-.+|...+.+.-| +|-..++.....-...++..|...|-+++.
T Consensus 1231 V~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 6666666665544433 2455666666666655444322 233333344556677888889999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCC------CCHHHHHHHHHHHHhcCCHhHH
Q 007970 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFY------PNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~------p~~~~~~~l~~~~~~~g~~~~a 447 (583)
+.+++...- --....-.|+-|.-.|.+- ++++..+.++-.-.. +++ -....|+.++..|.+-..++.|
T Consensus 1299 Isl~Ea~LG--LERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1299 ISLLEAGLG--LERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHhhhc--hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 888877642 1223455677777777765 466666655544322 110 0233455555555555555544
No 114
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=7.6e-05 Score=69.75 Aligned_cols=130 Identities=8% Similarity=0.026 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG-SMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
++..+-..+...++.++|+.+..++.+. .+-+..+|+.--.++...| ++++++..++.+.+.. +.+..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHH
Confidence 4445555555666666666666666653 2222334444444444444 3556666666655543 33444444443
Q ss_pred HHHHhcCCH--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007970 294 KGYCQQLQI--DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351 (583)
Q Consensus 294 ~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 351 (583)
.++.+.+.. ++++.+++.+++.. +.+..+|+....++...|+++++++.+.++++.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333344432 34445554444321 234445555555555555555555555555544
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.9e-05 Score=68.31 Aligned_cols=160 Identities=18% Similarity=0.118 Sum_probs=123.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007970 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405 (583)
Q Consensus 326 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (583)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...|.+..+ .-++|..+|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666777777777777665433 234555666688888889999999999998877 667888999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHH
Q 007970 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 485 (583)
.|+++.|..-|.+..+. ..-+...++.+...+.-.|+++.|..++...... -.-|..+-..|
T Consensus 147 ~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-----------------~~ad~~v~~NL 208 (257)
T COG5010 147 LGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-----------------PAADSRVRQNL 208 (257)
T ss_pred ccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-----------------CCCchHHHHHH
Confidence 99999999999988876 3346677888888888899999999998888764 12366777788
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 007970 486 ADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 486 ~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+-...|++++|..+...-.
T Consensus 209 Al~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 209 ALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHhhcCChHHHHhhccccc
Confidence 888888899999988877653
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=1.7e-05 Score=71.83 Aligned_cols=188 Identities=12% Similarity=-0.013 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-H
Q 007970 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR---ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV-V 323 (583)
Q Consensus 248 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~ 323 (583)
......+..+...+...|+++.|...++.+.... +.+. ..+..+..++...|++++|...++.+.+...-.+.. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4456778888888899999999999999988753 2222 456778888999999999999999987654322322 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 007970 324 SYNILIDGFILI--------DDSAGALTFFNEMRARGIAPTK-ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394 (583)
Q Consensus 324 ~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 394 (583)
++..+..++... |++++|.+.|+.+... .|+. .....+..... . ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------H
Confidence 344445555543 6778888888888775 3332 22222211100 0 00000 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGF-YP-NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
....+...|.+.|++++|+..+.+..+..- .| ....+..+..++...|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112456678899999999999999987521 12 3467888999999999999999999888765
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=1.1e-05 Score=73.03 Aligned_cols=189 Identities=13% Similarity=0.001 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK--ISY 360 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 360 (583)
.....+..+...+...|+++.|...|+++.......|. ..++..+..++...|++++|+..++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45566777777888888888888888888664321221 235667777888888888888888888775321111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 361 TTLMKAFALS--------SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432 (583)
Q Consensus 361 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 432 (583)
..+..++... |++++|.+.|+.+.+. .+.+...+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4444445443 5677778888777763 2223223322211100 000 000 0112
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+...+...|++.+|+..++++.+.+. -.| ....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYP---------------DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCC---------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455678899999999999999998731 122 247888999999999999999999998864
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=1.8e-05 Score=68.74 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=94.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HhH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI-SLARK--PGE 446 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~--~~~ 446 (583)
.++.+++...++...+ ..+.+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5566777777777766 456778888888888889999999999998888753 33666777777764 56676 588
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
|.++++++.+. .|+ ...+..+..++.+.|++++|...|+++.+.. +|+..
T Consensus 129 A~~~l~~al~~------------------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 129 TREMIDKALAL------------------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHHh------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 99999988876 554 4777888888888999999999999987642 44443
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=8.1e-08 Score=55.71 Aligned_cols=32 Identities=28% Similarity=0.686 Sum_probs=19.9
Q ss_pred cCCcCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 007970 53 DSKPDTAAYNAVLNACANLGKPKKFLQLFDQM 84 (583)
Q Consensus 53 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 84 (583)
|++||+.+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 35566666666666666666666666666655
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=4.8e-05 Score=79.29 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 329 (583)
+...+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 34466667777777777777777777777766 56677777777777777 777777777766542
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 007970 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409 (583)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 409 (583)
+...+++.++.++|.++.... +-+...| ..+.+.+....+...-..++-.+-..|...++|
T Consensus 179 --~i~~kq~~~~~e~W~k~~~~~-~~d~d~f----------------~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 179 --FIKKKQYVGIEEIWSKLVHYN-SDDFDFF----------------LRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred --HHhhhcchHHHHHHHHHHhcC-cccchHH----------------HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 455566777777777776652 1111111 122222222112222333444555556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 410 EEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 410 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+++..+++.+++.. +-|......++.+|
T Consensus 240 ~~~i~iLK~iL~~~-~~n~~a~~~l~~~y 267 (906)
T PRK14720 240 DEVIYILKKILEHD-NKNNKAREELIRFY 267 (906)
T ss_pred hHHHHHHHHHHhcC-CcchhhHHHHHHHH
Confidence 66666666666542 22444455555544
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00012 Score=63.49 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=78.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL--- 369 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 369 (583)
...|++.+++++|++..... .+......=+..+.+..+.+-|.+.+++|.+-. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 33455555555555554332 122222222233445555556666666665531 44455545554433
Q ss_pred -cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 007970 370 -SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448 (583)
Q Consensus 370 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 448 (583)
.+....|.-+|+++.+ ..+|+..+.+....++...|++++|..++++.+... .-++.++..++..-...|...++.
T Consensus 185 ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 2345666666666654 355666666666666666677777777776666552 335556655555555555554433
Q ss_pred -HHHHHHH
Q 007970 449 -LLWKEIK 455 (583)
Q Consensus 449 -~~~~~~~ 455 (583)
+.+.++.
T Consensus 262 ~r~l~QLk 269 (299)
T KOG3081|consen 262 ERNLSQLK 269 (299)
T ss_pred HHHHHHHH
Confidence 3333433
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00012 Score=63.38 Aligned_cols=250 Identities=13% Similarity=0.054 Sum_probs=164.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007970 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300 (583)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 300 (583)
+-+.-.|.+..++..-...... +.+...-..+-++|...|.+..... ++.... .|....+..+......-+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-----~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-----KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-----cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcc
Confidence 4444567777776665555432 2445555566777877787654332 222222 445555555555555455
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007970 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 380 (583)
+.+.-..-+.+.........+......-...|+..+++++|++...... +......=+..+.+..+.+.|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444333333323333343333444456889999999999887621 2333444455677888999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 381 DEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
++|.+- .+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++.+..
T Consensus 161 k~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 161 KKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999873 456677767776665 46788999999999875 789999999999999999999999999999998
Q ss_pred HhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhH-HHHHHHHHHHHH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF-RKALEIVACMEE 507 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 507 (583)
+. .-+..++..++.+-...|.- +-..+.+..++.
T Consensus 236 kd-----------------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 236 KD-----------------AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cc-----------------CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 73 33456777777666666654 445566666653
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=0.00017 Score=75.39 Aligned_cols=170 Identities=6% Similarity=0.110 Sum_probs=116.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (583)
+.+...|..|+..|...+++++|.++.+..... .|+ ...|..+...+.+.++.+.+..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-----~P~~i~~yy~~G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-----HKKSISALYISGILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCcceehHHHHHHHHHhhcchhhhhhh---------------
Confidence 456889999999999999999999999977764 444 33444444466666665554443
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
.++.......++..+..+...+.. ...+..++..+..+|-+.|+.++|..+|+++.+.. +-+....+.+...|+
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~a 161 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYE 161 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 233344444455444444444433 13344577788888888899999999999888875 556788888888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.. +.++|.+++.++... +....++..+.++|.++...
T Consensus 162 e~-dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhc
Confidence 88 888888888877652 44455666666666666553
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=5.9e-05 Score=65.47 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=82.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF-ALSSQ--PKL 375 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~--~~~ 375 (583)
.++.+++...++..++.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455566666666655432 4566677777777777777777777777777653 33556666666653 45555 477
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 430 (583)
|.+++++..+ ..+.+...+..+...+.+.|++++|+..|+++.+. .+|+..-
T Consensus 129 A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r 180 (198)
T PRK10370 129 TREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNR 180 (198)
T ss_pred HHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccH
Confidence 7777777776 34456677777777777778888888888777765 3454433
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.45 E-value=0.0018 Score=62.11 Aligned_cols=423 Identities=12% Similarity=0.065 Sum_probs=239.5
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
-|-|..+|+.||+-+... .++++.+.++++...- .-....|..-|..-....+++....+|.+.+..-. +...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 466899999999988666 8999999999998642 23467788999999999999999999999887643 4555655
Q ss_pred HHHHHHc-CCChHH----HHHHHHHHHh-hhHH------HHHHHHhhh--hccccccCCCCCCCcHHHHHhhcCCCCCCC
Q 007970 134 LVAAYVG-FGDLEI----AETIVQAMRE-GRRD------VCKIIRELD--LEDYSSENEGDDDDDDEVFEKLLPNSINPS 199 (583)
Q Consensus 134 l~~~~~~-~g~~~~----A~~~~~~~~~-~~~~------~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (583)
-+.---+ .|+... ..+.|+-... .+.+ ..+.+..+. ...-.+..+.+.+..+++|++++..-...-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5543222 222222 2222322221 1111 111111111 011123344566777788888773211000
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHH-------HhcCChhHHHHHHHHHHhcccCCCCCCH---------------HHHHHH
Q 007970 200 SEPPLLPKTFAPNSRIYTTLMKGY-------MNEGRVSDTVRMLGAMRRQEDNASHPDH---------------VTYTTV 257 (583)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------~~~~~l 257 (583)
. . +=.|-..|..=|+.. -+...+-.|.++++++...- .|..... ..|..+
T Consensus 172 E--k-----LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt-~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 172 E--K-----LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLT-RGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred H--H-----HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-hhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 0 0 000111121111111 12233445555555554320 0111111 113223
Q ss_pred HHHHHHcC------C--hHHHHHHHHHH-HhCCCCCCHHHH-----HHHHHHHHhcCC-------HHHHHHHHHHHHhcC
Q 007970 258 VSALVKAG------S--MDRARQVLAEM-TRIGVPANRITY-----NILLKGYCQQLQ-------IDKAKELLREMADDA 316 (583)
Q Consensus 258 l~~~~~~g------~--~~~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~A~~~~~~~~~~~ 316 (583)
|.-=-..+ . -....-++++. .-.+..|+.... ...-+.+...|+ -+++..+++..+..
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~- 322 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG- 322 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH-
Confidence 32111100 0 01111222221 122222322111 011122333343 34555556555431
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 007970 317 KIEPDVVSYNILIDGFILID---DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393 (583)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 393 (583)
-...+..+|..+...-...- ..+.....++++...-..--..+|..+++...+..-++.|..+|.++.+......++
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 11223333443333211111 356666777776654333334678888998889999999999999998864444478
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
..+++++.-|| .++.+-|.++|+--++. +..++.--...+.-+...++-..+..+|++....
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---------------- 464 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS---------------- 464 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc----------------
Confidence 88889988776 56789999999987764 4444555567788889999999999999999886
Q ss_pred CCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 474 PLKPDE--ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 474 ~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+.|+. .+|..++.-=..-|++..+.++-+.+..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 346654 8999999988899999999999888753
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=2.8e-05 Score=63.71 Aligned_cols=108 Identities=9% Similarity=-0.058 Sum_probs=76.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 343 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.++++..+. .|+. +......+...|++++|...|+.+.. -.+.+...|..+..++.+.|++++|+..|++....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344454443 3332 44556667778888888888888776 34556777788888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 423 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
. +.+...+..+..++...|++++|+..|+...+.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 446677777777888888888888888888765
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=0.00018 Score=74.46 Aligned_cols=160 Identities=6% Similarity=0.013 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
+.+..++..|..+..+.|++++|+.+++...+. .+-+......+..++.+.+++++|....+...... +-+....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 567889999999999999999999999999985 34446778888899999999999999999999875 5677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
..+..++.+.|++++|..+|+++... .+.+..++..+..++...|+.++|...|++..+. ..|....|+..+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~---- 230 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV---- 230 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH----
Confidence 88899999999999999999999862 2344778888888999999999999999998876 3455566655543
Q ss_pred cCCHHHHHHHHHHH
Q 007970 370 SSQPKLANKVFDEM 383 (583)
Q Consensus 370 ~~~~~~a~~~~~~~ 383 (583)
+...-..+++.+
T Consensus 231 --~~~~~~~~~~~~ 242 (694)
T PRK15179 231 --DLNADLAALRRL 242 (694)
T ss_pred --HHHHHHHHHHHc
Confidence 233334455555
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.0003 Score=60.56 Aligned_cols=188 Identities=13% Similarity=0.167 Sum_probs=135.1
Q ss_pred cCCcchHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH
Q 007970 71 LGKPKKFLQLFDQMHEF---G-AKPDVLT-YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 71 ~g~~~~A~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
..+.++.++++.++... | ..++..+ |..++-+....|+.+.|..+++++...- +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34566777777766442 3 4455544 5566667777888899999998887763 333333333333344567777
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 007970 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225 (583)
Q Consensus 146 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 225 (583)
+|.++++.+.+.+ |.|.+++-.-+.+.-.
T Consensus 104 ~A~e~y~~lL~dd---------------------------------------------------pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 104 EAIEYYESLLEDD---------------------------------------------------PTDTVIRKRKLAILKA 132 (289)
T ss_pred hHHHHHHHHhccC---------------------------------------------------cchhHHHHHHHHHHHH
Confidence 7888777776632 4567777777777777
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL---QI 302 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 302 (583)
.|+..+|++-+....+. ...|...|.-+...|...|++++|.-+++++.-.. |.+...+..+...+.-.| ++
T Consensus 133 ~GK~l~aIk~ln~YL~~----F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK----FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred cCCcHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 88888999999998886 78899999999999999999999999999998764 556666677776655444 46
Q ss_pred HHHHHHHHHHHhc
Q 007970 303 DKAKELLREMADD 315 (583)
Q Consensus 303 ~~A~~~~~~~~~~ 315 (583)
+.|.++|.+.++.
T Consensus 208 ~~arkyy~~alkl 220 (289)
T KOG3060|consen 208 ELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHh
Confidence 6788888887753
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.42 E-value=0.00015 Score=75.03 Aligned_cols=160 Identities=9% Similarity=0.044 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007970 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397 (583)
Q Consensus 319 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (583)
..+...+..|.......|.+++|..+++...+. .|+ ......+...+.+.+++++|...++.... ..+.+.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 456888888999999999999999999999886 454 56677788889999999999999999987 5566778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
.+..++.+.|++++|.++|+++...+ +-+..++..+..++...|+.++|...|+++.+.. .|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-----------------~~ 220 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-----------------GD 220 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----------------Cc
Confidence 88999999999999999999999742 3347788889999999999999999999998863 44
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 478 DEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 478 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
...-|+.+ .+++..-...++.+.
T Consensus 221 ~~~~~~~~------~~~~~~~~~~~~~~~ 243 (694)
T PRK15179 221 GARKLTRR------LVDLNADLAALRRLG 243 (694)
T ss_pred chHHHHHH------HHHHHHHHHHHHHcC
Confidence 44444433 345555566666663
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00092 Score=57.67 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.|++++|.++++.+.++ .+.|..++-.-+...-..|+.-+|++-+.+..+. +.-|...|..+...|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 44455555555555442 2444444444444444444444555555555443 44455555555555555555555555
Q ss_pred HHHHHH
Q 007970 450 LWKEIK 455 (583)
Q Consensus 450 ~~~~~~ 455 (583)
.+++++
T Consensus 176 ClEE~l 181 (289)
T KOG3060|consen 176 CLEELL 181 (289)
T ss_pred HHHHHH
Confidence 555544
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=0.00016 Score=62.73 Aligned_cols=158 Identities=13% Similarity=-0.001 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
..+-..+...|+-+.+..+...... ..+.|.......+....+.|++..|+..+++.... -++|...++.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHH
Confidence 5566667777777777777666542 22445556666777777888888888888887775 36677888888888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.|+.+.|..-|.+..+ -.+-+...++.+...+.-.|+++.|..++......+ .-|..+-..+..+....|++++|..
T Consensus 147 ~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 8888888888877776 334455667777777777888888888888877653 3366677777777788888888877
Q ss_pred HHHH
Q 007970 450 LWKE 453 (583)
Q Consensus 450 ~~~~ 453 (583)
+...
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 6543
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=5e-05 Score=62.22 Aligned_cols=98 Identities=7% Similarity=-0.111 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
+..+..+...+...|++++|...|+..... .+.+...|..+..++...|++++|...|+...+.. +.+...+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~l 98 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 334555667777777777777777777764 34456677777777777777777777777777654 5566777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 007970 293 LKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
..++...|++++|...|+..++.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777653
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.0024 Score=60.66 Aligned_cols=118 Identities=18% Similarity=0.034 Sum_probs=75.9
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGE 446 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 446 (583)
...|.++.|+..++.+.. ..+.|+..+......+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 355677777777777665 34556666666667777777777777777777664 444 4455556666777777777
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
|+.+++..... .+-|...|..|..+|...|+..++.....++.
T Consensus 393 ai~~L~~~~~~-----------------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFN-----------------DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhc-----------------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77777766654 13334667777777777776666666666554
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=3.7e-05 Score=73.21 Aligned_cols=124 Identities=20% Similarity=0.158 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
....++..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|++++++.++. .+-+...+......|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 3455566666677788888888888763 244 3445677777777778888888888764 234566666666777
Q ss_pred HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
...++++.|+.+.+++... .|+. .+|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l------------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL------------------SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888765 6665 788888888888888888888888774
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=6.4e-05 Score=61.26 Aligned_cols=98 Identities=15% Similarity=-0.016 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
......+...+...|++++|...|+.+.. ..+.+...+..+..++.+.|++++|..++++..+.+ +.+...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34455555666677777777777777765 234566677777777777777777777777776652 345566666677
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+...|++++|+..|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777765
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.001 Score=63.10 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=102.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALSSQ 372 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~ 372 (583)
..+...|++++|+..++.++.. .+.|...+......+...++..+|.+.++.+... .|+ ......+..++.+.|+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 3455678888888888887754 2445566666677788888888888888888875 444 5556667778888888
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 452 (583)
+.+|..+++.... ..+.|+..|..|.++|...|+..++..... ..+...|++++|+.++.
T Consensus 390 ~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 390 PQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred hHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHH
Confidence 8888888888776 567778888888888888887766654443 34556788888888888
Q ss_pred HHHHH
Q 007970 453 EIKER 457 (583)
Q Consensus 453 ~~~~~ 457 (583)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 88775
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=6.9e-05 Score=61.06 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=93.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.++.+... .+.+......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++..+..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555542 23345667778888999999999999999998863 4477888889999999999999999999988651
Q ss_pred hhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
+.+...+..+..++...|++++|.+.++...+ +.|+...+.
T Consensus 82 -----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 82 -----------------PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred -----------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 33457888888999999999999999999986 456665544
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=9.5e-05 Score=60.88 Aligned_cols=126 Identities=19% Similarity=0.173 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV--ATYGS 433 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ 433 (583)
.|..++..+ ..++...+...++.+.+.+ +.+ ......+...+...|++++|...|+.+......|+. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 3667777777777776632 222 233444556677778888888888877765422221 23344
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+...+...|++++|+..++..... ......+....++|.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE------------------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566677778888888777553221 223345566677788888888888777653
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.016 Score=59.27 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=140.7
Q ss_pred hhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHH--HHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 28 PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA--CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105 (583)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 105 (583)
+.+|+...+++.+. .|+.. |..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|..
T Consensus 25 fkkal~~~~kllkk-------------~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 25 FKKALAKLGKLLKK-------------HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred HHHHHHHHHHHHHH-------------CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 88899999888885 34432 2333333 46999999999999988776654 88899999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHH----HHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCC
Q 007970 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI----AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (583)
.++.++|..+|++.... -|+......+..+|.+.+++.+ |.++++..++.
T Consensus 90 ~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~------------------------ 143 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR------------------------ 143 (932)
T ss_pred HhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------------------------
Confidence 99999999999999887 4668888889999999887765 44444433332
Q ss_pred CCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHhcccCCCCCCH
Q 007970 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG----------RVSDTVRMLGAMRRQEDNASHPDH 251 (583)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~ 251 (583)
...+-++++.+.+.- -..-|.+.++.+.+.+ |..-+.
T Consensus 144 -------------------------------~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~--gk~~s~ 190 (932)
T KOG2053|consen 144 -------------------------------AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK--GKIESE 190 (932)
T ss_pred -------------------------------cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC--CccchH
Confidence 111112222211110 1223555666666553 222222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLA-EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
.-...-...+...|++++|.+++. ...+.-.+.+...-+.-+..+...+++.+..++-.+++..
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 223333344556788899988884 3334333445566667777888888888888888887764
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1.1e-05 Score=47.52 Aligned_cols=33 Identities=39% Similarity=0.805 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 427 (583)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999987
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00026 Score=67.55 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|++++++.... .+-+...+..-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 33445666666777888888888888643 244 3445666677777777888888887765 23456666666667
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
|.+.++++.|+.+.+++.+ -.|.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7788888888888888876 344556688888888888888888888877665
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00055 Score=56.34 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHhHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWK 452 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~ 452 (583)
....+|...|++++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33334444444444444443
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.1e-05 Score=47.57 Aligned_cols=33 Identities=33% Similarity=0.680 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 92 (583)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.2e-05 Score=47.07 Aligned_cols=32 Identities=59% Similarity=1.005 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 91 (583)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=2.2e-05 Score=45.85 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 426 (583)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.92 E-value=0.037 Score=56.81 Aligned_cols=200 Identities=15% Similarity=0.129 Sum_probs=128.4
Q ss_pred HHHHHHHHH--hcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 007970 13 WSTVVSRLA--ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 13 ~~~li~~~~--~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
|..++.++. +.|+ .++|..+++..... .+.|..|...+-.+|-..++.++|..+|+...+..
T Consensus 44 ~a~vLkaLsl~r~gk--~~ea~~~Le~~~~~------------~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~-- 107 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGK--GDEALKLLEALYGL------------KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY-- 107 (932)
T ss_pred HHHHHHHHHHHHhcC--chhHHHHHhhhccC------------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--
Confidence 344444443 4566 88998777776431 22378899999999999999999999999998854
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC----------hHHHHHHHHHHHhhhHH
Q 007970 91 PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD----------LEIAETIVQAMREGRRD 160 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~ 160 (583)
|+......+..+|.+.+++.+-.++--++.+. ++-++..|=++++.....-. ..-|.+.++.+.+...
T Consensus 108 P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g- 185 (932)
T KOG2053|consen 108 PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG- 185 (932)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-
Confidence 77888888889999988887655554455443 45566666666666554321 2235555555554431
Q ss_pred HHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007970 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240 (583)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (583)
.........+........|+.++|..++..-...... ..+...-+.-+..+...+++.+..++-.++.
T Consensus 186 k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~------------~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 186 KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT------------SANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc------------ccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1111111222233344667888888888543322111 2344445566778888888888888888887
Q ss_pred hc
Q 007970 241 RQ 242 (583)
Q Consensus 241 ~~ 242 (583)
..
T Consensus 254 ~k 255 (932)
T KOG2053|consen 254 EK 255 (932)
T ss_pred Hh
Confidence 75
No 147
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.90 E-value=0.023 Score=53.65 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=83.0
Q ss_pred cCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 007970 370 SSQ-PKLANKVFDEMLRDPRVKVDIVAWNMLV----EGYCRM---GLVEEAKRIIERMKENGFYPN----VATYGSLANG 437 (583)
Q Consensus 370 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~ 437 (583)
.|. -++|.++++.+.+- .+-|..+-|.+. ..|.+. ..+..-+.+-+-+.+.|++|- ...-|.|..+
T Consensus 392 ~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred cCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 444 67788888877762 223444433332 122221 223334444444556777763 3455666655
Q ss_pred --HHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 438 --ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 438 --~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
+...|++.++.-.-..+.+ +.|+..+|..+.-+.....++++|+.++..+ +|+..
T Consensus 470 EyLysqgey~kc~~ys~WL~~------------------iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~ 526 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK------------------IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNER 526 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH------------------hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchh
Confidence 5678999999877666654 4999999999999999999999999999874 67777
Q ss_pred HHHHH
Q 007970 516 KYKKI 520 (583)
Q Consensus 516 ~~~~~ 520 (583)
.+.+-
T Consensus 527 ~~dsk 531 (549)
T PF07079_consen 527 MRDSK 531 (549)
T ss_pred hHHHH
Confidence 76654
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00016 Score=63.98 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=43.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLD 483 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 483 (583)
+.+++.+|+..|.+.++. .+-|.+.|..-..+|.+.|.++.|++-.+..+.. .|.. .+|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------------------Dp~yskay~ 153 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------------------DPHYSKAYG 153 (304)
T ss_pred HhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------------------ChHHHHHHH
Confidence 344455555555555443 1223344444444455555555555544444432 3433 4455
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (583)
.|..+|...|++++|++.|++.++ +.|+..+|..
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHH
Confidence 555555555555555555554442 4444444433
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00033 Score=67.19 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH
Q 007970 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI--GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323 (583)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 323 (583)
+.+.+......+++.+....+++.+..++-..... ....-..|..++++.|...|..+.++.+++.=.. .|+-||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChh
Confidence 35566777788888888888888888888887764 2222334556899999999999999998877644 78889999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 370 (583)
+++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888777777777777777776654
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.0011 Score=52.50 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
.++..++..+.+.|++++|.+.|..+.+. .|+ ...+..+..++...|++++|+..|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---------- 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---------- 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC----------
Confidence 34566777788888999999999888764 232 34566677888888999999999998887521
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 470 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
+-......+..+..++.+.|++++|.+.++.+.+.
T Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 71 ----KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ----CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 00111356777778888889999999999988764
No 151
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.80 E-value=0.029 Score=51.85 Aligned_cols=310 Identities=17% Similarity=0.120 Sum_probs=198.9
Q ss_pred CCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 007970 210 APNSRIYTTLMKG--YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 210 ~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
..|....-.++.+ -.-.|+++.|.+-|+.|... ......-...|.-..-+.|+.+.|..+-+..-..- +--..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 3454455555543 34579999999999999863 11112223333334456788888888888776643 33456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS--YNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKI-SYT 361 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~-~~~ 361 (583)
....++...|..|+++.|+++++.-....-+.++..- -..|+.+-. -..+...|...-.+..+ +.|+.. .-.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 7888999999999999999999887665555565432 222222211 12345566666555554 455532 233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYP-NVATYGSLANGIS 439 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l~~~~~ 439 (583)
....++.+.|+..++-.+++.+-+. .|++..+...+ +.+.|+ .++.-+++.... ..+| +......+..+-.
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAl 340 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAAL 340 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4456788999999999999999873 46666554433 345554 444444443321 1344 4567777788888
Q ss_pred hcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC-VRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
..|++..|..--+..... .|....|..|.+.- ...|+-.++...+-+..+. |....|.
T Consensus 341 da~e~~~ARa~Aeaa~r~------------------~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPaW~ 399 (531)
T COG3898 341 DAGEFSAARAKAEAAARE------------------APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPAWT 399 (531)
T ss_pred hccchHHHHHHHHHHhhh------------------CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCccc
Confidence 899999988877776644 89999999888865 4559999999999888753 4444555
Q ss_pred HHHHHhhhhhhcccchh-HHHHHHHHHHHHHHHHHHH
Q 007970 519 KIYVEMHSRMFTSKHAS-QARQDRRRERKRAAEAFKF 554 (583)
Q Consensus 519 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ 554 (583)
..-+....+.+.++-.. ...-+|+.+.|++..+++-
T Consensus 400 adg~vse~wapvspvtgRLdafewkap~~qL~~~~e~ 436 (531)
T COG3898 400 ADGVVSEAWAPVSPVTGRLDAFEWKAPTGQLAHPIED 436 (531)
T ss_pred ccCcccccccccCCchhhhhhhhhcCchhhhcCcccc
Confidence 55455566665555433 3334566666776555544
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=8.6e-05 Score=54.43 Aligned_cols=80 Identities=23% Similarity=0.205 Sum_probs=53.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHH
Q 007970 406 MGLVEEAKRIIERMKENGFY-PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLD 483 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 483 (583)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|+.++++ .+. .|+. ....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------------------~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------------------DPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------------------HHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------------------CCCCHHHHH
Confidence 47788888888888765221 2344555577888888888888888887 322 3332 4444
Q ss_pred HHHHHHHhhhhHHHHHHHHHH
Q 007970 484 ALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~ 504 (583)
.+..+|.+.|++++|++++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 557788888888888888875
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00038 Score=51.88 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHhCCCcchhH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARAS--------RKHLLVFVLERILEMGITLCMTT 130 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 130 (583)
+....|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667777788999999999999999999 899999999999888663 23457789999999999999999
Q ss_pred HHHHHHHHHc
Q 007970 131 FQSLVAAYVG 140 (583)
Q Consensus 131 ~~~l~~~~~~ 140 (583)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00086 Score=50.30 Aligned_cols=94 Identities=22% Similarity=0.113 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCC
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (583)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++......
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------- 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----------------- 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------
Confidence 4455666677777777777777776642 2334556666667777777788877777776541
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 476 KPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 476 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+.+..++..+..++...|++++|...++...+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 22335666677777777888888777777653
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.017 Score=47.47 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHH
Q 007970 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG---FYPNVA 429 (583)
Q Consensus 353 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~ 429 (583)
..|+...-..|..++...|+..+|...|++.... -+..|......+.++....+++..|...++.+-+.. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 4677777778888888899999999999888763 455677788888888888899999999888887642 2344
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
+...+.+++...|++.+|...|+.+... -|+...-......+.+.|+.+++..-+..+.+.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~------------------ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~- 222 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY------------------YPGPQARIYYAEMLAKQGRLREANAQYVAVVDT- 222 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-
Confidence 4455677788899999999999988876 677655555666777888888877766666442
Q ss_pred CCCCHHHHH
Q 007970 510 IPPNKTKYK 518 (583)
Q Consensus 510 ~~p~~~~~~ 518 (583)
+.-+..+|.
T Consensus 223 ~~r~~~H~r 231 (251)
T COG4700 223 AKRSRPHYR 231 (251)
T ss_pred HHhcchhHH
Confidence 334555665
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.036 Score=51.75 Aligned_cols=278 Identities=10% Similarity=0.034 Sum_probs=158.0
Q ss_pred HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC-------CC
Q 007970 18 SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG-------AK 90 (583)
Q Consensus 18 ~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~ 90 (583)
..+.+..+ +..|+..+...++. .+.++.-|..-+..+...|++++|.--.+.-.+.. .+
T Consensus 57 n~~yk~k~--Y~nal~~yt~Ai~~------------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 57 NAFYKQKT--YGNALKNYTFAIDM------------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHhh--HHHHHHHHHHHHHh------------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 44445555 77888888777775 45556666666667777777777766555444321 11
Q ss_pred CCH--HHHHHHHHHHHhcCChh-----HHHHHHHHHHHhCC-CcchhHHHHH-HHHHHcCCChHHHHHHHHHHHhhhHHH
Q 007970 91 PDV--LTYNVMIKLCARASRKH-----LLVFVLERILEMGI-TLCMTTFQSL-VAAYVGFGDLEIAETIVQAMREGRRDV 161 (583)
Q Consensus 91 ~~~--~~~~~li~~~~~~~~~~-----~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~ 161 (583)
++. .....+|.+.....+.+ .++..++.+..... +|...++..| ..++.-.|+.++|...--.+...++..
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n 202 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN 202 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence 111 11222333332222211 12222222222211 2333444433 345677889999888876666654443
Q ss_pred HHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007970 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (583)
.. .+.+.+.++...++.+.+...|++.+...-.-.....+. ..+.-...|..-..-..+.|++..|.+.|.+...
T Consensus 203 ~~---al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~--~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 203 AE---ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS--MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hH---HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh--hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 33 344567777788999999999998873321100000000 0000011233334456678888888888888888
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
..+....++...|........+.|++++|+.--+...+.. +.-...+..-..++...++|++|.+-|++..+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7666677777777777777888888888888877777642 111122223334555677888888888877654
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.0017 Score=55.08 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP--NVATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
..+...+..+.+..+.......|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444445553322333345667778888888899999999999987652222 2347888888899999999999999
Q ss_pred HHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHH-------hhhhHHHHHHHHHHH
Q 007970 452 KEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICV-------RAAFFRKALEIVACM 505 (583)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 505 (583)
+++... .|+ ...+..+..++. ..|++++|+..+++.
T Consensus 96 ~~Al~~------------------~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALER------------------NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHh------------------CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 988865 443 355555555555 778877666666554
No 158
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00077 Score=64.72 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH
Q 007970 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395 (583)
Q Consensus 318 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 395 (583)
.+.+......++..+....+.+.+..++...+... ...-..|..++++.|...|..+.+..+++.=.. +|+-||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhh
Confidence 34566667777777777777777877777776641 222234556788888888888888888776654 588888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887776655555666655555554443
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.0011 Score=61.27 Aligned_cols=146 Identities=12% Similarity=0.202 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.+|..+++...+.+..+.|..+|.+..+......++....+++. |...++.+.|..+|+...+. .+.+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666777777777777777777777543322333333333332 22345666678888777665 45566777777777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
+...++.+.|..+|++......... ....|...+..-.+.|+.+.+.++.+++.+. .|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 7788888888888888876322222 2357888888888888888888888888764 344334443443
No 160
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.0078 Score=49.43 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007970 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398 (583)
Q Consensus 319 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 398 (583)
.|+...--.|..+....|++.+|...|++...--..-|......+.++....+++..|...++++.+......++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666777788888888888888888776545557777788888888888888888888888774322223444556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
+.+.+...|++.+|...|+...+. -|+...-......+.+.|+.+++..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 778888888888888888888874 67776666666667788877777665555544
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00099 Score=49.94 Aligned_cols=91 Identities=21% Similarity=0.133 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
.+...+...|++++|..+++.+.+. .+.+...+..+..++...+++++|.+.++...... +.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 3444444555555555555555442 22233444555555555556666666665555432 22334455555555555
Q ss_pred CCHhHHHHHHHHHH
Q 007970 442 RKPGEALLLWKEIK 455 (583)
Q Consensus 442 g~~~~a~~~~~~~~ 455 (583)
|++++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666665555554
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.0015 Score=62.70 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=63.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-H
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-E 479 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 479 (583)
..+...|++++|+++|.++++.. +-+...|..+..+|...|++++|+..++++++. .|+ .
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------------------~P~~~ 70 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL------------------DPSLA 70 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CcCCH
Confidence 44556677777777777776642 334556666666677777777777777777654 443 3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
..|..+..+|...|++++|+..+++..+ +.|+.......
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~ 109 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 5666666777777777777777777664 44555444433
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0032 Score=50.92 Aligned_cols=101 Identities=7% Similarity=-0.072 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+......+..-+...|++++|.++|+.+... .+-+..-|..|.-++-..|++++|+..|....... +.++..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 3455666777788889999999999888874 34456677778888888899999999999888876 467778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAK 317 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~ 317 (583)
+..++...|+.+.|++.|+..+...+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 88889999999999999988876443
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.0019 Score=51.06 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRV-KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY--PNVATYGSLAN 436 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~ 436 (583)
+..+...+...|++++|...|..+.+.... +.....+..+..++.+.|+++.|.+.|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555556666666666666666542111 111334555666666677777777777766643111 11344555566
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666667777777777766665
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0089 Score=55.57 Aligned_cols=264 Identities=13% Similarity=0.025 Sum_probs=162.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (583)
.......+.+..++.+|+..+....+. .+.+..-|..-...+...|+++.+.--.+.-.+.. +-......-.-++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c 126 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQC 126 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhh
Confidence 344556777888899999999998885 34445556555666666677777766555544322 1111122223333
Q ss_pred HHhcCCHHHHHHHHH---------------HHHhcCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007970 296 YCQQLQIDKAKELLR---------------EMADDAKIEPDVVSYNILI-DGFILIDDSAGALTFFNEMRARGIAPTKIS 359 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~---------------~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 359 (583)
+...++..+|.+.++ .+.....-+|...+|..+- .++...+++++|...--...+.. . ...
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~--~n~ 203 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A--TNA 203 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c--chh
Confidence 333444444443332 2211111123344454443 35567889998888777766653 1 122
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHhcCCCCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 007970 360 YTTLMK--AFALSSQPKLANKVFDEMLRDPRVKVDIVA-------------WNMLVEGYCRMGLVEEAKRIIERMKEN-- 422 (583)
Q Consensus 360 ~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~~~~~-- 422 (583)
+..+++ ++-..++.+.|...|++.++. .|+... +..=..-..+.|++..|.+.|.+.+..
T Consensus 204 ~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred HHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 333333 344567888899988888762 333221 111122345789999999999999853
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHH
Q 007970 423 -GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALE 500 (583)
Q Consensus 423 -g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 500 (583)
++.|+...|.....+..+.|+.++|+.-.+...+. .|.. ..+..-..++.-.++|++|.+
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------------------D~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------------------DSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777888999999999998888743 4432 455555678888899999999
Q ss_pred HHHHHHHc
Q 007970 501 IVACMEEH 508 (583)
Q Consensus 501 ~~~~~~~~ 508 (583)
-+++..+.
T Consensus 343 d~~~a~q~ 350 (486)
T KOG0550|consen 343 DYEKAMQL 350 (486)
T ss_pred HHHHHHhh
Confidence 99998653
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0015 Score=55.42 Aligned_cols=96 Identities=15% Similarity=-0.016 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007970 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAP--TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399 (583)
Q Consensus 322 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 399 (583)
...|..+...+...|++++|+..|+........+ ...++..+...+...|++++|...++...+. .+....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 3445555556666677777777777665542221 1235666666677777777777777776652 23334445555
Q ss_pred HHHHH-------HcCCHHHHHHHHHHH
Q 007970 400 VEGYC-------RMGLVEEAKRIIERM 419 (583)
Q Consensus 400 i~~~~-------~~g~~~~A~~~~~~~ 419 (583)
...+. ..|+++.|+..+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 55555 666766555554443
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=0.00014 Score=53.26 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=61.4
Q ss_pred cCCcchHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHH
Q 007970 71 LGKPKKFLQLFDQMHEFGAK-PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149 (583)
Q Consensus 71 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 149 (583)
.|+++.|+.+++.+.+.... ++...+-.+..++.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999886542 2455566688999999999999999988 4333 2234555566899999999999999
Q ss_pred HHHH
Q 007970 150 IVQA 153 (583)
Q Consensus 150 ~~~~ 153 (583)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0023 Score=61.42 Aligned_cols=89 Identities=9% Similarity=-0.035 Sum_probs=52.2
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 445 (583)
.+...|++++|+..|.++++ ..+.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666655 233445556666666666666666666666666542 224455555666666666666
Q ss_pred HHHHHHHHHHHH
Q 007970 446 EALLLWKEIKER 457 (583)
Q Consensus 446 ~a~~~~~~~~~~ 457 (583)
+|+..|+++.+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.004 Score=53.01 Aligned_cols=65 Identities=14% Similarity=-0.068 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN--VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+..+...+...|++++|...|++..+....+. ...+..+..++...|++++|+..++++.+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455555666666666666666666654321111 245555666666666666666666666654
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.0045 Score=52.68 Aligned_cols=85 Identities=8% Similarity=-0.044 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.+..+...+...|++++|...|++.++.....++ ...+..+...+...|++++|...+.+..... +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444555555555666666555555432111111 2344455555555555555555555554431 1123333344444
Q ss_pred HHhcCCH
Q 007970 367 FALSSQP 373 (583)
Q Consensus 367 ~~~~~~~ 373 (583)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444443
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=0.00011 Score=41.81 Aligned_cols=30 Identities=43% Similarity=0.955 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGF 424 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 424 (583)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 578888888888888888888888877653
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.56 E-value=0.006 Score=49.41 Aligned_cols=96 Identities=13% Similarity=-0.051 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 439 (583)
.-.+..-+...|++++|..+|+.+.. -.+.+..-|..|..++-..|++++|+..|....... +-|+..+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33444556788999999999998876 445677888899999999999999999999998765 357778888899999
Q ss_pred hcCCHhHHHHHHHHHHHHh
Q 007970 440 LARKPGEALLLWKEIKERC 458 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~ 458 (583)
..|+.+.|.+.|+..+..+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999888764
No 173
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=7.1e-05 Score=42.55 Aligned_cols=29 Identities=31% Similarity=0.691 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.0027 Score=58.66 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL-SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 401 (583)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+...+ .++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467888888888888999999999998653 3345556555555334 5677779999999998 46778899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNV---ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+.+.++.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999875 43333 48888888888899999999999999886
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.0078 Score=60.52 Aligned_cols=143 Identities=11% Similarity=-0.010 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 007970 353 IAPTKISYTTLMKAFALSS-----QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM--------GLVEEAKRIIERM 419 (583)
Q Consensus 353 ~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~ 419 (583)
.+.+...|...+++..... ....|..+|++..+ ..+-....|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4455666666666543322 25567777777765 2233334444443333222 1123334444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHH
Q 007970 420 KEN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498 (583)
Q Consensus 420 ~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 498 (583)
... ....+...+..+.-.+...|++++|...++++.+. .|+...|..+..+|...|+.++|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------------------~ps~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL------------------EMSWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 332 12334556666655566678888888888888764 67777777888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHH
Q 007970 499 LEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 499 ~~~~~~~~~~~~~p~~~~~ 517 (583)
...+++..+ +.|...+|
T Consensus 473 ~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 473 ADAYSTAFN--LRPGENTL 489 (517)
T ss_pred HHHHHHHHh--cCCCCchH
Confidence 888887764 45555554
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.03 Score=52.00 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
...|......|-..|++++|.+.|....+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 44677777778788888888888877644
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.012 Score=54.63 Aligned_cols=178 Identities=11% Similarity=0.154 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC--
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF-- 87 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 87 (583)
...|......|...++ +++|...|.+......+..+ ...-...|.....+|.+. ++++|+..++.....
T Consensus 35 a~~y~~Aa~~fk~~~~--~~~A~~ay~kAa~~~~~~~~------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKD--WEKAAEAYEKAADCYEKLGD------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH
Confidence 4467777788888887 99999999888765443221 111234555656665444 888888888876543
Q ss_pred --CCCCC--HHHHHHHHHHHHhc-CChhHHHHHHHHHHHh----CCC-cchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 007970 88 --GAKPD--VLTYNVMIKLCARA-SRKHLLVFVLERILEM----GIT-LCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157 (583)
Q Consensus 88 --~~~~~--~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 157 (583)
| .|+ ...+..+...|... |+++.|++.|++..+. +.+ .-...+..+...+.+.|++++|.++|+++...
T Consensus 106 ~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 106 EAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3 222 23466667777777 7888888888877653 211 11345566777888888888888888877652
Q ss_pred hHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHhcCChhHHHHHH
Q 007970 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR-IYTTLMKGYMNEGRVSDTVRML 236 (583)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 236 (583)
..+. .....+.. .+...+-++...|++..|.+.|
T Consensus 185 ~l~~---------------------------------------------~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 185 CLEN---------------------------------------------NLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp CCCH---------------------------------------------CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhcc---------------------------------------------cccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1000 00012222 3445556777889999999999
Q ss_pred HHHHhc
Q 007970 237 GAMRRQ 242 (583)
Q Consensus 237 ~~~~~~ 242 (583)
+.....
T Consensus 220 ~~~~~~ 225 (282)
T PF14938_consen 220 ERYCSQ 225 (282)
T ss_dssp HHHGTT
T ss_pred HHHHhh
Confidence 998765
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.15 Score=50.96 Aligned_cols=207 Identities=8% Similarity=0.042 Sum_probs=105.4
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCCHHHHHHHH-------HHHHhcCChhHHHHHHHHHHHhCCCc
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF-GAKPDVLTYNVMI-------KLCARASRKHLLVFVLERILEMGITL 126 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li-------~~~~~~~~~~~a~~~~~~~~~~~~~~ 126 (583)
.|.+..|..+.......-.++.|...|-..... |++. +.-+..+. ..-+--|++++|.++|-+|..+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh--
Confidence 567778887777766666667776666555443 2211 00011110 111223667777777766655542
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCC
Q 007970 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206 (583)
Q Consensus 127 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 206 (583)
.+..+.+.|++-...++++.--. +..
T Consensus 766 -------Aielr~klgDwfrV~qL~r~g~~---d~d-------------------------------------------- 791 (1189)
T KOG2041|consen 766 -------AIELRKKLGDWFRVYQLIRNGGS---DDD-------------------------------------------- 791 (1189)
T ss_pred -------hHHHHHhhhhHHHHHHHHHccCC---Ccc--------------------------------------------
Confidence 34455566666554444432111 000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 007970 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286 (583)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 286 (583)
.+.-..+|+.+...+.....|++|.+.|...... ...+.++.+..++++.+.+-.. ++-+.
T Consensus 792 --D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~ecly~le~f~~LE~la~~-----Lpe~s 852 (1189)
T KOG2041|consen 792 --DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQIECLYRLELFGELEVLART-----LPEDS 852 (1189)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHHHHHHHHHhhhhHHHHHHh-----cCccc
Confidence 0112345666777777777777777766554321 1234444444444444333332 23344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 347 (583)
...-.+..++.+.|.-++|.+.|-+.. .|- ..+..|...++|.+|.++-+.
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 455556666777777777666654431 121 233455566666666665443
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.45 E-value=0.0042 Score=46.49 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 340 GALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
.++.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 456667777777777777777777766543
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.088 Score=53.10 Aligned_cols=334 Identities=13% Similarity=0.147 Sum_probs=181.7
Q ss_pred HhCCCcchhHHHH-----HHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCC
Q 007970 121 EMGITLCMTTFQS-----LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNS 195 (583)
Q Consensus 121 ~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 195 (583)
..|++.+..-|.. +++-+...+.+..|.++-+.+.......+..+..+...-.... ...-+++.+....-+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~-d~~d~~vld~I~~kls~- 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQS-DKMDEEVLDKIDEKLSA- 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhcc-CccchHHHHHHHHHhcc-
Confidence 3466666665544 5666777888899988877775432211111122211111111 12222233333322211
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC-CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007970 196 INPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN-ASHPDHVTYTTVVSALVKAGSMDRARQVL 274 (583)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 274 (583)
. ......|..+.......|+.+-|..+++.-...+.. ..-.+..-+...+.-+...|+.+....++
T Consensus 503 ------------~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vl 569 (829)
T KOG2280|consen 503 ------------K-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVL 569 (829)
T ss_pred ------------c-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHH
Confidence 0 133456777888888899999999887654332100 00112234566677788888888887777
Q ss_pred HHHHhCC-----------CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHHHhcCCCCCCHHHHHHHHHHHH
Q 007970 275 AEMTRIG-----------VPANRITYNILLK--------GYCQQLQIDKAKELL--REMADDAKIEPDVVSYNILIDGFI 333 (583)
Q Consensus 275 ~~~~~~~-----------~~~~~~~~~~l~~--------~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~~~li~~~~ 333 (583)
-.+...- .+.....|.-+++ .+...++-..+...| +.......+.+-..........+.
T Consensus 570 lhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 570 LHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 6665431 1222222222222 011112222222111 110000001111122223333444
Q ss_pred hcCCH----------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007970 334 LIDDS----------AGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402 (583)
Q Consensus 334 ~~~~~----------~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 402 (583)
+.... .+-+.+.+.+.. .|......+.+-.+.-+...|+..+|.++-++..- ||...|-.-+.+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~a 724 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHH
Confidence 43331 112222222222 23334445566677778889999999988776643 788888888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 482 (583)
++..++|++-+++-+... .+.-|.-.+.+|.+.|+.++|.+++-+... ..
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------------------l~--- 774 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------------------LQ--- 774 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------------------hH---
Confidence 999999998777765543 244577788899999999999888765431 11
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q 007970 483 DALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 483 ~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
-...+|.+.|++.+|.++--+-
T Consensus 775 -ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 775 -EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred -HHHHHHHHhccHHHHHHHHHHh
Confidence 4667888889988887765543
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.01 Score=59.65 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 007970 318 IEPDVVSYNILIDGFILI-----DDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALS--------SQPKLANKVFDEM 383 (583)
Q Consensus 318 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 383 (583)
.+.+...|...+.+.... ++...|..+|++..+. .|+ ...+..+..++... .+...+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356777888887775432 2366888889888886 444 34444443333221 1223344444443
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
......+.+...|..+...+...|++++|...++++.+. .|+...|..+...+...|++++|.+.++++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 332124455677888877777889999999999999986 478889999999999999999999999999864
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.0049 Score=48.02 Aligned_cols=90 Identities=26% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKENGFYPN--VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (583)
+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|+.++++.... .
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~------------------~ 68 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE------------------F 68 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------C
Confidence 44566778888888888888888776544 234556667788888888888888888765 3
Q ss_pred CC---H-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 477 PD---E-ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 477 p~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
|+ . .....+..++...|+.++|+..+-...
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 43 2 333334557778888888888776654
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.00061 Score=47.46 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=51.5
Q ss_pred HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
...|++++|+++|+++... .| +......++.+|.+.|++++|.++++++.. ..|+...|
T Consensus 2 l~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHH
Confidence 4689999999999999987 55 568888899999999999999999999985 46776666
Q ss_pred HHH
Q 007970 518 KKI 520 (583)
Q Consensus 518 ~~~ 520 (583)
..+
T Consensus 62 ~~l 64 (68)
T PF14559_consen 62 QQL 64 (68)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.34 E-value=0.016 Score=45.12 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHH
Q 007970 329 IDGFILIDDSAGALTFFNEMRARGIAPT--KISYTTLMKAFALSSQPKLANKVFDEMLRDPRV-KVDIVAWNMLVEGYCR 405 (583)
Q Consensus 329 i~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 405 (583)
..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+|+.....+.. ..+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3456667888888888888877765544 334556666777888888888888877763211 1122233333446677
Q ss_pred cCCHHHHHHHHHHHHH
Q 007970 406 MGLVEEAKRIIERMKE 421 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~ 421 (583)
.|+.++|++.+-....
T Consensus 88 ~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA 103 (120)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7888888887766553
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.34 E-value=0.0022 Score=44.80 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhh-hHHHHHHHHHH
Q 007970 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAA-FFRKALEIVAC 504 (583)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~ 504 (583)
++.+|..+...+...|++++|+..|++.++. .|+. ..+..+..+|.+.| ++++|++.+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 4678888999999999999999999999987 6655 88889999999999 89999999999
Q ss_pred HHH
Q 007970 505 MEE 507 (583)
Q Consensus 505 ~~~ 507 (583)
..+
T Consensus 64 al~ 66 (69)
T PF13414_consen 64 ALK 66 (69)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.33 E-value=0.081 Score=47.66 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
.+..-|.+.|.+.-|+.-++.+++... +.+.....+..++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp--------------~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYP--------------DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCC--------------CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455568888999999999999988752 233345777788889999999999988877664
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0044 Score=55.20 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
-+.+.+++.+|+..|.+.++.. +-|..-|..-..+|++.|.++.|++-.+..+. -.+....+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 4667889999999999988863 44677777788889999999988888777766 23344678888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
+|++.|++.++ +.|+-.+|..=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999998887 57777766554443
No 188
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.30 E-value=0.17 Score=48.13 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=48.3
Q ss_pred HHHHHHHHH--HHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 007970 479 EELLDALAD--ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 479 ~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 556 (583)
...=+.|.+ -+...|++.++.-.-..+. .+.|++.+|.-+.+.++.. .+++||++++.
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~------------------k~Y~eA~~~l~ 519 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMEN------------------KRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHH------------------hhHHHHHHHHH
Confidence 345555554 3567899999988777776 4889999999886666655 79999999999
Q ss_pred cCCC
Q 007970 557 GLPN 560 (583)
Q Consensus 557 ~~~~ 560 (583)
++|.
T Consensus 520 ~LP~ 523 (549)
T PF07079_consen 520 KLPP 523 (549)
T ss_pred hCCC
Confidence 9976
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.26 E-value=0.0013 Score=45.23 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCC
Q 007970 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPP 512 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 512 (583)
+...+...|++++|+..|+++++. .|+. ..+..+..++.+.|++++|...++++.+ ..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~------------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ------------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC------------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCc
Confidence 456788999999999999999975 6755 8888999999999999999999999975 345
Q ss_pred C
Q 007970 513 N 513 (583)
Q Consensus 513 ~ 513 (583)
+
T Consensus 63 ~ 63 (65)
T PF13432_consen 63 D 63 (65)
T ss_dssp T
T ss_pred C
Confidence 4
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.0053 Score=52.19 Aligned_cols=91 Identities=16% Similarity=0.270 Sum_probs=76.2
Q ss_pred CCcCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChhHH
Q 007970 54 SKPDTAAYNAVLNACANL-----GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA----------------SRKHLL 112 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a 112 (583)
-..+-.+|..++..|.+. |..+=....+..|.+.|+..|..+|+.||..+=+. .+-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 355888999999999755 56677788889999999999999999999876432 234668
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
++++++|...|+-||..++..|++.+++.+..
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999999776653
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.22 E-value=0.0022 Score=44.11 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|+..|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566666666666666666542 224445555666666666666666666666654
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.021 Score=51.26 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHHhhhhhccc
Q 007970 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR---KPGEALLLWKEIKERCEVKKEGV 465 (583)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 465 (583)
.+-|...|-.|...|...|+++.|...|.+..+. -.+++..+..+..++.... ...++..+++++...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-------- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-------- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--------
Confidence 3668889999999999999999999999998875 3556777777777754432 456788899998876
Q ss_pred cCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 466 NADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 466 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
.|+ ......|...+...|++.+|...|+.|.+.
T Consensus 223 ----------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 223 ----------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred ----------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555 477888888999999999999999999864
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.19 E-value=0.2 Score=46.69 Aligned_cols=297 Identities=14% Similarity=0.123 Sum_probs=164.1
Q ss_pred HHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHH--HHhcCCcchHHHHHHHHHHCCCC
Q 007970 13 WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA--CANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 13 ~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
|..|-.++...|-++-..|.++-.+..+. +..|....-.++.+ -.-.|++++|.+-|+.|...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l------------lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--- 149 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL------------LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--- 149 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh------------hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---
Confidence 55555556555555577777766655543 22343334444433 35679999999999999862
Q ss_pred CCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhh---HHHHHHH
Q 007970 91 PDVLT--YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR---RDVCKII 165 (583)
Q Consensus 91 ~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~ 165 (583)
|.... +..|.-..-+.|..+.|...-++....- +.-.+.+..++...+..|+++.|+++++.-.... ++...-.
T Consensus 150 PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~ 228 (531)
T COG3898 150 PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERS 228 (531)
T ss_pred hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHH
Confidence 33222 2333334457789999998888887763 4567888999999999999999999998665421 1111111
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 245 (583)
.... .+.-.... -.-+...|...-.+..+
T Consensus 229 rAvL----------------------------------------------LtAkA~s~-ldadp~~Ar~~A~~a~K---- 257 (531)
T COG3898 229 RAVL----------------------------------------------LTAKAMSL-LDADPASARDDALEANK---- 257 (531)
T ss_pred HHHH----------------------------------------------HHHHHHHH-hcCChHHHHHHHHHHhh----
Confidence 1110 00000111 11224444444444433
Q ss_pred CCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHH
Q 007970 246 ASHPDHV-TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP-DVV 323 (583)
Q Consensus 246 ~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 323 (583)
..||.. .-.....++.+.|+..++-.+++.+-+.. |.+.+.... .+.+.|+ .++.-++...+....+| +..
T Consensus 258 -L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 258 -LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred -cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchH
Confidence 233321 22334456667777777777777776653 333322221 1223333 23222222222222223 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhc
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDEMLR 385 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 385 (583)
+...+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+..+
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555566666677777666655555443 566666666666443 34777777777766655
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.18 E-value=0.0015 Score=45.47 Aligned_cols=52 Identities=19% Similarity=0.098 Sum_probs=29.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+.|++++|+++|+++... .+-+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666554 1225555555666666666666666666666554
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.044 Score=54.05 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=18.1
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQL 80 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~ 80 (583)
+.|....+.+-+-.|...|.+++|.++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcc
Confidence 344445566666778888888887654
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.38 Score=48.82 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC----cchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMGIT----LCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
..+|..+.+-....|+++-|..+++.=...+.+ .+..-+...+.-+.+.|+.+....++-++..
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 345666666666677777766655432211100 1122333444445556666655555554443
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.12 E-value=0.0034 Score=43.81 Aligned_cols=65 Identities=23% Similarity=0.173 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHH
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR-KPGEALLLWKEIKER 457 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 457 (583)
+...|..+...+...|++++|+..|.+.++.. +-+...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677778888888888888888888888752 335667777777888888 688888888887764
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.11 E-value=0.13 Score=44.95 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
.++.-|=...-..+|...+..+.+. + ...-..+..-|.+.|.+..|+.-++.+++... +...
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~-l---a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp--------------~t~~ 176 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNR-L---AEHELYIARFYYKRGKYKAAIIRFQYVIENYP--------------DTPA 176 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHH-H---HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST--------------TSHH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------------CCch
Confidence 3333444444555555555554431 0 11122345568888999999999998888731 1111
Q ss_pred CHHHHHHHHHHHHhhhhHHHHH
Q 007970 478 DEELLDALADICVRAAFFRKAL 499 (583)
Q Consensus 478 ~~~~~~~l~~~~~~~g~~~~A~ 499 (583)
....+..++.+|.+.|..+.+.
T Consensus 177 ~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 177 AEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHH
Confidence 1256667778888888877443
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.26 Score=46.22 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
..+.+..+.-|...|+...|.++-++. .+ |+...|-..+.+++..++|++-.++... .- .+.-|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHH
Confidence 345566677778889888888876555 23 7888999999999999999988776432 12 3467888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+|.+.|...+|..+..++.. ..-+..|.+.|++.+|.+.--+.
T Consensus 246 ~~~~~~~~~eA~~yI~k~~~--------------------------~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKIPD--------------------------EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHCCCHHHHHHHHHhCCh--------------------------HHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999888776321 23456778888888887765543
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.07 E-value=0.011 Score=54.80 Aligned_cols=276 Identities=14% Similarity=0.016 Sum_probs=163.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHH
Q 007970 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR----IGVPA-NRITYNILLKG 295 (583)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~ 295 (583)
.-+|+.|+......+|+...+.+......-...|..|.++|.-.+++++|+++...=+. .|-+. .......|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 56789999999999999999875333333345677888888888999999988653211 11000 11122233334
Q ss_pred HHhcCCHHHHHHHHHHHHh---cCC-CCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH---
Q 007970 296 YCQQLQIDKAKELLREMAD---DAK-IEPDVVSYNILIDGFILIDD--------------------SAGALTFFNEM--- 348 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~---~~~-~~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m--- 348 (583)
+--.|.+++|.-.-.+-+. +-| -......+-.+...|...|+ ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445556555433221111 000 00112233334445543332 23345555432
Q ss_pred -HHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---cCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Q 007970 349 -RARGIA-PTKISYTTLMKAFALSSQPKLANKVFDEML---RDPRVK-VDIVAWNMLVEGYCRMGLVEEAKRIIERMK-- 420 (583)
Q Consensus 349 -~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 420 (583)
.+.|-. ..-..|..|...|.-.|+++.|+...+.-. +++|.. .....+..+..+++-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 222211 112345666666677889999887665422 223332 234577888899999999999999988754
Q ss_pred --HCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHH
Q 007970 421 --ENG-FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497 (583)
Q Consensus 421 --~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 497 (583)
+.| -.......-+|.++|.-...+++|+.++.+-........ ..--....+.+|..++...|..+.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-----------DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-----------DRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHhhhhHHH
Confidence 222 123445666788888888899999998876544311000 112344678889999999999999
Q ss_pred HHHHHHHHHH
Q 007970 498 ALEIVACMEE 507 (583)
Q Consensus 498 A~~~~~~~~~ 507 (583)
|+.+.+.-++
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 9988877644
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.01 E-value=0.015 Score=52.72 Aligned_cols=104 Identities=11% Similarity=0.031 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV----ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
..|...+..+.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|+..|+.+.+.+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 44555555556678899999999998875 3443 46677788888999999999999999876310
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 470 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
-......+..++.++...|+.++|.++++.+.+ ..|+..
T Consensus 213 -----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 213 -----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred -----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 011135555667788889999999999998875 345554
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.048 Score=44.88 Aligned_cols=72 Identities=24% Similarity=0.152 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH---
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME--- 506 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 506 (583)
+...++..+...|++++|+.+++.+.... +-+...+..++.+|...|+..+|.++|+.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-----------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 55667777888999999999999999872 3355899999999999999999999999984
Q ss_pred --HcCCCCCHHHHH
Q 007970 507 --EHGIPPNKTKYK 518 (583)
Q Consensus 507 --~~~~~p~~~~~~ 518 (583)
+.|+.|++.+-.
T Consensus 127 ~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 127 REELGIEPSPETRA 140 (146)
T ss_dssp HHHHS----HHHHH
T ss_pred HHHhCcCcCHHHHH
Confidence 479999987543
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.98 E-value=0.02 Score=48.78 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 007970 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----------------QLQIDKAKELLREMADDAKIEPDVVSYNIL 328 (583)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 328 (583)
|.++-....+..|.+.|+..|..+|+.|++.+=+ -.+-+-|++++++| +..|+-||..++..+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~l 144 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQM-ENNGVMPDKETEQML 144 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHH
Confidence 4444444444455555555555555554444321 12345667777777 446777777777777
Q ss_pred HHHHHhcCC
Q 007970 329 IDGFILIDD 337 (583)
Q Consensus 329 i~~~~~~~~ 337 (583)
+..+.+.+.
T Consensus 145 l~iFG~~s~ 153 (228)
T PF06239_consen 145 LNIFGRKSH 153 (228)
T ss_pred HHHhccccH
Confidence 777755443
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.057 Score=48.61 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHH
Q 007970 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG---LVEEAKRIIERMKENGFYPNVAT 430 (583)
Q Consensus 354 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~ 430 (583)
+-|...|..|..+|...|+.+.|...|.+..+ -.+++...+..+..++.... .-.++.++|++++... +-|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 55677788888888888888888888877776 33455566666665554432 3456777888877652 345566
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 431 YGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666667777888888888888888764
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.92 E-value=0.29 Score=44.09 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT---YTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
...+-.....+.+.|++++|.+.|+.+.... +-+... ...+..++.+.+++++|...++...+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3333344445555666666666666666541 111111 233445556666666666666666654
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.041 Score=51.26 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCCHH
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEM----RARGIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLR----DPRVKVDIV 394 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 394 (583)
.|..|...|.-.|+++.|+...+.- .+.|-+. ....+..+..++.-.|+++.|.+.|+.... -..-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666778888888765542 2233221 234567788888888999999888876532 111123345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKE----N-GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..+|..+|.-...+.+|+.++++-+. . ...-....+.+|..+|...|..++|+.+.+...+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566778888888889999888775432 1 12234567888999999999999999888776654
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.90 E-value=0.26 Score=43.18 Aligned_cols=67 Identities=9% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
...+-.....+...|++.+|.+.|+.+....+ +.+--......++.++.+.|+++.|...++..++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455566677777777777777776521 11112344555666777777777777777776654
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.89 E-value=0.018 Score=45.34 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCC--CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD--SDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
|..++..++.++++.|+.+....+++..-.- ...+.... -...+.+.|+..++.+++.+|+..|++..|+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI---~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI---DVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC---CCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3456777777888888887777776554322 11111111 123347899999999999999999999999999999
Q ss_pred HH-HcCCCCCHHHHHHH
Q 007970 505 ME-EHGIPPNKTKYKKI 520 (583)
Q Consensus 505 ~~-~~~~~p~~~~~~~~ 520 (583)
+. .++++-+...|..+
T Consensus 78 fs~~Y~I~i~~~~W~~L 94 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRL 94 (126)
T ss_pred HHHHcCCCCCHHHHHHH
Confidence 86 48888888888776
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.87 E-value=0.086 Score=43.37 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA-----RGIAPTKISY 360 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 360 (583)
+...++..+...|+++.|..+.+.++... +.+...|..+|.+|...|+...|.++|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456666777778888888777776543 44667777788888888888888877776632 4777766553
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.74 E-value=0.051 Score=49.38 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----VATYGSL 434 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 434 (583)
|...+..+.+.|++++|...|+.+.+.+...+ ....+..+..+|...|++++|...|+.+.+. .|+ ...+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHH
Confidence 44444333445666666666666665321110 1235556666667777777777777776653 122 2334444
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHH
Q 007970 435 ANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+...|+.++|...|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566677777777777777665
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.84 Score=46.03 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=44.6
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCcchhHHHHHHHHHHcCCChHHHH
Q 007970 70 NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM-GITLCMTTFQSLVAAYVGFGDLEIAE 148 (583)
Q Consensus 70 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (583)
--|++++|.++|-+|-.+.+ .|....+.|++-...++++.--.. +-..-...|+.+...+.....+++|.
T Consensus 746 ~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888999998888766432 345555666766666655431000 00112346666777777777777777
Q ss_pred HHHHHH
Q 007970 149 TIVQAM 154 (583)
Q Consensus 149 ~~~~~~ 154 (583)
+.+..-
T Consensus 817 ~yY~~~ 822 (1189)
T KOG2041|consen 817 KYYSYC 822 (1189)
T ss_pred HHHHhc
Confidence 766544
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.67 E-value=0.014 Score=41.91 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+++.+...|...|++++|+..|++..+.....+ .-.|+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-----------DDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----------THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678888899999999999999999987632110 01233 36788889999999999999999998753
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.57 E-value=0.02 Score=40.33 Aligned_cols=66 Identities=21% Similarity=0.201 Sum_probs=54.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
...|.+.+++++|++.++.+... .|+. ..+.....++.+.|++++|.+.++...+ ..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL------------------DPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh------------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCC
Confidence 35688999999999999999986 5554 7888889999999999999999999986 4566
Q ss_pred HHHHHHH
Q 007970 514 KTKYKKI 520 (583)
Q Consensus 514 ~~~~~~~ 520 (583)
......+
T Consensus 62 ~~~~~~~ 68 (73)
T PF13371_consen 62 DPDARAL 68 (73)
T ss_pred cHHHHHH
Confidence 6554433
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.48 E-value=0.023 Score=40.01 Aligned_cols=56 Identities=21% Similarity=0.058 Sum_probs=37.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..|.+.+++++|.++++.+...+ +.+...+.....++...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777777777777777652 334555666666677777777777777777765
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.19 Score=47.25 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..+++.+..+|.+.+++..|++...+.+... ++|...+---..+|...|+++.|+..|+++++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-----------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-----------------PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-----------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3467888889999999999999999998762 44557777778999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccC
Q 007970 508 HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLD 570 (583)
Q Consensus 508 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 570 (583)
+.|+....+.-+..+-.+. +....+.+..+...|.-....+..--+..|...
T Consensus 320 --~~P~Nka~~~el~~l~~k~---------~~~~~kekk~y~~mF~k~~~~~~k~~s~~~~~~ 371 (397)
T KOG0543|consen 320 --LEPSNKAARAELIKLKQKI---------REYEEKEKKMYANMFAKLAEESAKTKSEAALED 371 (397)
T ss_pred --hCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhcccccccccccchhccc
Confidence 6788776665544444432 333334445555555555444443334444433
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.45 E-value=0.063 Score=42.34 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 007970 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332 (583)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 332 (583)
...|+..+..+++.+|+..+++..|+++++...+.-+++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456777777777777777777777777777776666666677777766543
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.40 E-value=0.87 Score=42.82 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
+..+.-+...|+...|.++..+. + .|+...|...+.+++..++|++...+... +-++..|..++.+|.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F-k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF-K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc-C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 33444555566666666665444 2 46666666677777777777665554321 1133556666666666
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 416 (583)
.|+..+|..+..++. +..-+..|.+.|++.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 677666666655521 133455666666666665543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.39 E-value=0.012 Score=42.12 Aligned_cols=69 Identities=14% Similarity=0.301 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD-TAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
..+|+.+...|...|+ +++|+..|++..+.....++ -.|+ ..+++.+..+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGR--YDEALDYYEKALDIEEQLGD------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTT------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4588999999999999 99999999999986433322 1233 67899999999999999999999998764
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=96.28 E-value=0.32 Score=46.98 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHH
Q 007970 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADI 488 (583)
Q Consensus 410 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~ 488 (583)
.+|.++.++..+.+ +-|+.....+..++...++++.|..+|+++... .||. .+|......
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------------------~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH------------------STDIASLYYYRALV 381 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------------------CCccHHHHHHHHHH
Confidence 34444444444442 234444444444444455555555555555432 4443 444444444
Q ss_pred HHhhhhHHHHHHHHHHH
Q 007970 489 CVRAAFFRKALEIVACM 505 (583)
Q Consensus 489 ~~~~g~~~~A~~~~~~~ 505 (583)
+.-.|+.++|.+.+++.
T Consensus 382 ~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 382 HFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 44555555555555553
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.21 E-value=1.2 Score=42.43 Aligned_cols=164 Identities=13% Similarity=0.007 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKI--EPDVVSYNILIDGFIL---IDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
.++-+|....+++...++++.+...... ......-....-++.+ .|+.++|++++..+......+++.++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444466666666666666666432110 0111112222233334 5666666666666444444556666666555
Q ss_pred HHHh---------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC-HH---HHHHHH---HH-HHHCC---CC
Q 007970 366 AFAL---------SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL-VE---EAKRII---ER-MKENG---FY 425 (583)
Q Consensus 366 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~A~~~~---~~-~~~~g---~~ 425 (583)
.|-. ....++|...|.+.-+. .|+...=-.++..+...|. .+ +..++- .. +.+.| -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 12366777777766542 2333221111222222232 11 222222 11 22233 23
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 426 PNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+-..+..++.++.-.|++++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 46667788888899999999999999999865
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.21 E-value=0.11 Score=42.51 Aligned_cols=87 Identities=16% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 482 (583)
+...|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|+.+|....... .-|...+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-----------------~~dp~p~ 108 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-----------------KNDYRPV 108 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------------cCCCCcc
Confidence 344555566655555554432 1233444445555555555666655555544321 1112223
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 483 DALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 483 ~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
-....++...|+.+.|...|+...+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3344555555666666665555543
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.81 Score=40.39 Aligned_cols=141 Identities=10% Similarity=-0.001 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL----- 434 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l----- 434 (583)
..+++..+.-.+.+.-....++++++. .-+.++...+.|++.-.+.|+.+.|...|++..+..-..|..+++.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445555555666676777777777663 33556667777777777778888888887766543223333333333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCH
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 514 (583)
...|.-++++.+|...+.++...+ +.|....+.-+-+..-.|+..+|++.++.|.+ ..|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-----------------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-----------------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-----------------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCcc
Confidence 334555677888888887776642 22333444444445557888888888888874 45666
Q ss_pred HHHHHH
Q 007970 515 TKYKKI 520 (583)
Q Consensus 515 ~~~~~~ 520 (583)
.+-.++
T Consensus 320 ~l~es~ 325 (366)
T KOG2796|consen 320 YLHESV 325 (366)
T ss_pred chhhhH
Confidence 655554
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.15 E-value=0.3 Score=48.87 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI-----VAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVAT 430 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~ 430 (583)
+..++....=.|+-+.+++.+....+..++.-.. -.|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3444444455566666666666655533332211 123333333322 34567788888888764 566655
Q ss_pred HHHH-HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 431 YGSL-ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 431 ~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
|... .+.+...|+.++|++.|+++...... --+.....+--+..++.-.++|++|.+.+..+.+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-------------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSE-------------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhh-------------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 5433 33456678888888888865532110 002223455556677777888888888888886532
Q ss_pred CCCCHHHHHHH
Q 007970 510 IPPNKTKYKKI 520 (583)
Q Consensus 510 ~~p~~~~~~~~ 520 (583)
..+...|.-+
T Consensus 336 -~WSka~Y~Y~ 345 (468)
T PF10300_consen 336 -KWSKAFYAYL 345 (468)
T ss_pred -ccHHHHHHHH
Confidence 2344444433
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.27 Score=46.31 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
..+++.+..+|.+.+++.+|++.-++.+..+ ++|...+-.-..+|...|+++.|+..|+++++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 3467788889999999999999999999874 667888777888999999999999999999986
Q ss_pred CCCCCCH-HHHHHHHHHHHhhhhHHH-HHHHHHHHHH
Q 007970 473 PPLKPDE-ELLDALADICVRAAFFRK-ALEIVACMEE 507 (583)
Q Consensus 473 ~~~~p~~-~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 507 (583)
.|+. .+-..|+.+-.+...+.+ ..++|..|..
T Consensus 321 ---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 321 ---EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776 445555555555555444 4778888853
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.10 E-value=1.3 Score=42.09 Aligned_cols=195 Identities=13% Similarity=0.076 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHH
Q 007970 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG---VPANRITYNILLKGYCQ---QLQID 303 (583)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~ 303 (583)
++..+.+..+...-+.....+..+...++-.|....+++...++.+.+.... +.....+--..+.++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 3444455555554221122233444556667888999999999999988752 22233334455666777 89999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFIL---------IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ-- 372 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 372 (583)
+|++++..++. ....++..+|..+...|-. ....++|+..|.+.-+. .|+...=-.++..+...|.
T Consensus 200 ~Al~il~~~l~-~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 200 KALQILLPVLE-SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 99999988544 3345777788777766532 23467788888876554 3443332222222222232
Q ss_pred --HHHHHHHH---HH-HhcCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 373 --PKLANKVF---DE-MLRDP--RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429 (583)
Q Consensus 373 --~~~a~~~~---~~-~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 429 (583)
-.+..++- .. +.++. .-..+-..+.+++.++.-.|+.++|.+.+++|.+. .|...
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 11222222 22 21211 12345566778899999999999999999999975 34444
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=95.99 E-value=0.33 Score=39.82 Aligned_cols=96 Identities=7% Similarity=-0.071 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
..-...--+-..|++++|..+|.-+.-.+. -+..-|..|..++-..++++.|+..|......+ .-|+..+.....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 334455556689999999999999988664 355566777777888899999999999887766 456777777899999
Q ss_pred cCCChHHHHHHHHHHHhh
Q 007970 140 GFGDLEIAETIVQAMREG 157 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~ 157 (583)
..|+.+.|...|......
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999999988763
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.99 E-value=0.6 Score=46.82 Aligned_cols=165 Identities=17% Similarity=0.127 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDV-----VSYNILIDGFIL----IDDSAGALTFFNEMRARGIAPTKISY 360 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 360 (583)
..++....-.|+-+.+++.+....+..++.-.. ..|..++..++. ..+.+.|.+++..+... -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 345555555677777777776665433332222 123333333332 45667888888888876 5665555
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 361 TTL-MKAFALSSQPKLANKVFDEMLRDPR--VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 361 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
... .+.+...|++++|.+.|+....... .+.....+--+..++.-..+|++|.+.|..+.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 4456778899999999987653111 11223445556677888899999999999998753 3345555555544
Q ss_pred -HHhcCCH-------hHHHHHHHHHHHH
Q 007970 438 -ISLARKP-------GEALLLWKEIKER 457 (583)
Q Consensus 438 -~~~~g~~-------~~a~~~~~~~~~~ 457 (583)
+...|+. ++|.++++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4556777 7888888877664
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.91 E-value=0.17 Score=48.78 Aligned_cols=66 Identities=18% Similarity=-0.003 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV----ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777777777664 4543 24677777777777777777777777653
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.82 E-value=0.32 Score=44.82 Aligned_cols=162 Identities=10% Similarity=0.013 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKENG-----FYPNVAT 430 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~ 430 (583)
.|..+.+++.+..++.+++.+-+.-....|..+. .....++..++.-.+.++++++.|+...+.- -.....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3445555555555566666655544433233221 1233446667777778888888888775421 1112356
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC--CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK--PDEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
+-.|...|.+..++++|+-+..++.+.-.. .++. ++. -.......+..++...|.+-+|.+.-++..+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s--~~l~-------d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNS--YGLK-------DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHh--cCcC-------chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 778888888999999998888777654210 0000 011 11123445566788888888888888876432
Q ss_pred CC-CCCHHHHHHHHHHhhhhhhc
Q 007970 509 GI-PPNKTKYKKIYVEMHSRMFT 530 (583)
Q Consensus 509 ~~-~p~~~~~~~~~~~~l~~~~~ 530 (583)
.+ .-|..++... +..++.+|+
T Consensus 236 al~~Gdra~~arc-~~~~aDIyR 257 (518)
T KOG1941|consen 236 ALQHGDRALQARC-LLCFADIYR 257 (518)
T ss_pred HHHhCChHHHHHH-HHHHHHHHH
Confidence 22 2344444433 334444433
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=1.3 Score=39.19 Aligned_cols=133 Identities=11% Similarity=0.005 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-----HHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV-----AWN 397 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~ 397 (583)
.....++.++...|.+.-.+..+++.++...+.++.....+.+.-.+.|+.+.|...|+.+.+..+ ..+.. ...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345667777778889999999999999876666788888999999999999999999997765322 22222 223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.....|.-.+++..|...+.+....+ .-|+...|.-.-+....|+..+|++.++.+...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33345666788999999999888763 346666666666677889999999999999876
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.76 E-value=0.6 Score=36.25 Aligned_cols=93 Identities=12% Similarity=-0.022 Sum_probs=63.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-- 478 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 478 (583)
-++...|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.-++++.+... -+-.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag---------------~~trta 114 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAG---------------DQTRTA 114 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC---------------ccchHH
Confidence 3566778888888888887765 344677788888888888888888888888776521 1111
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 479 EELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 479 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
-..|..-...|...|+-+.|..-|+..-+.|
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 1334444556777788888888887776655
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=1.5 Score=39.66 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
-+...-..++.+|...|+.+.|..++..+.... ..........-|..+.+.....+...+-...-.. +-|...-.
T Consensus 166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~ 240 (304)
T COG3118 166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAAL 240 (304)
T ss_pred ccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHH
Confidence 335566678888888888888888888776541 1111222223344444444444444444444432 33666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 338 (583)
.+...+...|+.+.|.+.+-.+++...-..|...-..++..+.-.|.-
T Consensus 241 ~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 241 ALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 777888888888888887777766544445556666666666555533
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.69 E-value=0.23 Score=47.80 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCH----HHHHHHHHHHHhcCCcchHHHHHHHH
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT----AAYNAVLNACANLGKPKKFLQLFDQM 84 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 84 (583)
+...|+.+..+|...|+ +++|+..|++.++ +.|+. .+|..+..+|...|++++|+..++..
T Consensus 74 ~a~a~~NLG~AL~~lGr--yeEAIa~f~rALe-------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGR--VKDALAQFETALE-------------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHh-------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45577777777777777 7777777777766 34442 34777777777777777777777777
Q ss_pred HHC
Q 007970 85 HEF 87 (583)
Q Consensus 85 ~~~ 87 (583)
.+.
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 663
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.53 E-value=1.6 Score=38.66 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=43.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC---
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI--YVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL--- 558 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--- 558 (583)
.+.+.|.+.|.+..|..-+++|.+. .+-+..+..++ +.+.+..+ |..++|...-+=+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~l-----------------gl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYAL-----------------GLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHh-----------------CChHHHHHHHHHHHhc
Confidence 3457889999999999999999874 33333333332 24444443 6777766555444
Q ss_pred -CCCCC-CcccccCCCCC
Q 007970 559 -PNSYY-GSEWRLDPMDG 574 (583)
Q Consensus 559 -~~~~~-~~~~~~~~~~~ 574 (583)
|+++. ...|+..+++|
T Consensus 234 ~p~s~~~~~~~~~~~~~~ 251 (254)
T COG4105 234 YPDSQWYKDAYRLLQRGG 251 (254)
T ss_pred CCCCcchhhhhhcccccc
Confidence 34433 44555555443
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.49 E-value=1 Score=44.56 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=78.3
Q ss_pred HHcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 262 VKAGSMDRARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 340 (583)
.-.++++.+.++...- .-..+ +....+.++..+.+.|..+.|+++...- . .-.....+.|+.+.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP----------D---HRFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H----------H---HHHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh----------H---HHhHHHHhcCCHHH
Confidence 3455666655554311 11111 2344566666666666666666554221 1 11223345666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 341 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
|.++.++ .++...|..|.......|+++.|++.|++... +..|+-.|.-.|+.+.-.++.+...
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 6655432 23556677777777777777777777766543 4555566666777666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 421 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
..| -++....++...|+.++..+++.+.
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 544 1344444455566666666655543
No 236
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.47 E-value=3.1 Score=41.55 Aligned_cols=413 Identities=12% Similarity=0.046 Sum_probs=228.8
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
+-..|+.+|.--..... .+.+...++.++.. .|---.-|-.....=.+.|..+.+.++|+.-.+ +
T Consensus 44 ~f~~wt~li~~~~~~~~--~~~~r~~y~~fL~k------------yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-a 108 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIED--VDALREVYDIFLSK------------YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-A 108 (577)
T ss_pred cccchHHHHhccCchhH--HHHHHHHHHHHHhh------------CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-h
Confidence 34467777765544443 56667777777754 333344677777777899999999999999887 5
Q ss_pred CCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHh-CCC-cchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHH
Q 007970 89 AKPDVLTYNVMIKLCA-RASRKHLLVFVLERILEM-GIT-LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII 165 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 165 (583)
+..+...|...+..+. ..|+.+.....|+..... |.. .+...|...|..-..++++.....+++.+.+......+..
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 6567777777666554 457777778888887764 322 3456777888888888999999999998887432222211
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHH-HHh
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN---EGRVSDTVRMLGA-MRR 241 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~-~~~ 241 (583)
. .-|.+.+.+.- .....+...+..+....+. ......-.+.+.. +..
T Consensus 189 f-------------------~~f~~~l~~~~----------~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~ 239 (577)
T KOG1258|consen 189 F-------------------DRFKQLLNQNE----------EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKD 239 (577)
T ss_pred H-------------------HHHHHHHhcCC----------hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhh
Confidence 1 11111110000 0000011111111111110 0000011111111 111
Q ss_pred cccCCCCCC---HHHHHHHHHH-------HHHcCChHHHHHHHHHHHhCC---C----CCCHHHHHHHHHHHHhcCCHHH
Q 007970 242 QEDNASHPD---HVTYTTVVSA-------LVKAGSMDRARQVLAEMTRIG---V----PANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 242 ~~~~~~~~~---~~~~~~ll~~-------~~~~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
. ..|. ....+.+... +-..-........++.-++.- + +++..+|...+..-...|+.+.
T Consensus 240 ~----~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 240 S----TDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred c----cCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 1 1111 1111122221 112222333334444433321 1 2345678888888889999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007970 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 384 (583)
+.-+|+...- ....=...|-..+.-....|+.+-|..++....+-.++-.+.+-..-...+-..|+.+.|..+++.+.
T Consensus 316 ~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 316 VFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999988852 11112234444455455568888888887776654333333322222223455689999999999998
Q ss_pred cCCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHhHHHHHHHHHH
Q 007970 385 RDPRVKVDI-VAWNMLVEGYCRMGLVEEAK---RIIERMKENGFYPNVATYGSLANG-----ISLARKPGEALLLWKEIK 455 (583)
Q Consensus 385 ~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~~~~~g~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~ 455 (583)
.+ . |+. ..-..-+....+.|+.+.+. +++........ +..+...+.-- +.-.++.+.|..++.++.
T Consensus 394 ~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 394 SE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred hh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 74 3 443 33333455667788888887 44443333211 22222222222 334678999999999998
Q ss_pred HHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 007970 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493 (583)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 493 (583)
+. ++++...|..+++.+...+
T Consensus 469 ~~-----------------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 469 DI-----------------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hc-----------------CCccHHHHHHHHHHHHhCC
Confidence 75 3566688888888765444
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.41 E-value=2.2 Score=39.50 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=42.4
Q ss_pred HhcCCcchHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcC-ChhHHHHHHHHHHHh----C----CCcc----
Q 007970 69 ANLGKPKKFLQLFDQMHEFG--AKPDV------LTYNVMIKLCARAS-RKHLLVFVLERILEM----G----ITLC---- 127 (583)
Q Consensus 69 ~~~g~~~~A~~~~~~m~~~~--~~~~~------~~~~~li~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~---- 127 (583)
.+.|+++.|..++.+..... ..|+. ..|+.-.. ....+ +++.|...+++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788888888888876643 12221 12332222 23445 777776666554433 1 1222
Q ss_pred -hhHHHHHHHHHHcCCChHHHHH
Q 007970 128 -MTTFQSLVAAYVGFGDLEIAET 149 (583)
Q Consensus 128 -~~~~~~l~~~~~~~g~~~~A~~ 149 (583)
..++..++.+|...+..+...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 2355566666766666544333
No 238
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.40 E-value=1.8 Score=43.33 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH----
Q 007970 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS---- 324 (583)
Q Consensus 249 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 324 (583)
.+..+...+...+.+...+..|-++|..|-.. ..+++.....++|.+|..+-+...+ ..||+..
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaq 812 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQ 812 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc---ccccccchHHH
Confidence 34555666666666677778888888776542 3567778888999999888877643 3444321
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 325 -------YNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 325 -------~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
|.-.-.+|.+.|+-.+|..+++++..
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 22223456666666666666666544
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=2.2 Score=39.23 Aligned_cols=115 Identities=9% Similarity=0.075 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHcCCHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI----VAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 410 (583)
.|++.+|-..++++.+. .+.|...+...=.+|...|+.+.-...+.++... ..++. ..-..+.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34555555555555543 3444444444445555555555555555555442 12222 22222333444556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
+|.+.-++..+.+ +.|...-..+...+...|++.++.++..+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666655555442 23444555555555555666666555443
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=1.6 Score=38.14 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 273 (583)
|...|-.|.-..++..|.+.++...+.+.-....+..+...|+.+| ..|+.|++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3444444555555666666655543332111222344455555544 34444444433
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=1.2 Score=40.27 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=28.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 385 (583)
....|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344556666666665555542 22334445555555666666666666655543
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.28 E-value=1.7 Score=43.01 Aligned_cols=84 Identities=11% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.+...|..|.....+.|+++-|.+.|.+... |..|+-.|...|+.+...++.+.....|. ++
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n 406 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------IN 406 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HH
Confidence 4566788888888888888888877776643 55566667777777777777766666551 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
....++.-.|+.++..+++.+.
T Consensus 407 ~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 407 IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHc
Confidence 4444555567777777666543
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=2.3 Score=39.07 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=110.5
Q ss_pred CCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHH
Q 007970 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256 (583)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 256 (583)
..|++.+|-..+++++ ..+|.|..++..--.++...|+...-...++++... -.+|...|..
T Consensus 115 ~~g~~h~a~~~wdklL--------------~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~----wn~dlp~~sY 176 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLL--------------DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK----WNADLPCYSY 176 (491)
T ss_pred ccccccHHHHHHHHHH--------------HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc----cCCCCcHHHH
Confidence 4577778888888887 566888889998889999999999999999988775 3455443333
Q ss_pred H----HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHH
Q 007970 257 V----VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD---VVSYNILI 329 (583)
Q Consensus 257 l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li 329 (583)
+ .-++...|-+++|++.-++..+.+ +.|.....++.+.+-..+++.++.+...+-..... ..+ ..-|-...
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTA 254 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHH
Confidence 3 233456899999999999888876 56777788888888899999999988765532111 111 12233334
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 007970 330 DGFILIDDSAGALTFFNEM 348 (583)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~m 348 (583)
-.+...+.++.|+++|..-
T Consensus 255 l~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhcccchhHHHHHHHHH
Confidence 4566679999999999763
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.21 E-value=2.6 Score=39.07 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=10.7
Q ss_pred HHhcCCHhHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIK 455 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~ 455 (583)
+.+.+++++|.++|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445666666666666443
No 245
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.14 E-value=2.2 Score=37.86 Aligned_cols=276 Identities=12% Similarity=0.099 Sum_probs=157.4
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhc
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI---GV--PANRITYNILLKGYCQQ 299 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 299 (583)
+...+++|+.-|.+..+.....-.-.-.....++....+.+++++..+.+.+++.. .+ .-+..+.|+++...+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 45688999999999887531111111234567888999999999999998888642 11 23456778888877777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDV----VSYNILIDGFILIDDSAGALTFFNEMRARGIAP-----------TKISYTTLM 364 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~ 364 (583)
.+.+--.+.|+.-++...-..+. .+-.-+...|...+++.+...+++++...-... -...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 77666555554433211111111 122445566777788888888888886542111 124566777
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHH-H---HCCCCCCHHH---HH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG-----YCRMGLVEEAKRIIERM-K---ENGFYPNVAT---YG 432 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~-~---~~g~~p~~~~---~~ 432 (583)
+.|....+-.....+|+........-|.+.... +|+- +.+.|++++|..-|-+. . +.| .|...+ |.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHH
Confidence 788888887777888877654334446655433 3333 34668888876444333 2 344 343333 23
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCC---CCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD---LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
.|.+.+.+.| ++.... .+-.-.|.......|+.+|.+ ++..+-.++++.-+. .
T Consensus 277 VLANMLmkS~----------------------iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-~ 332 (440)
T KOG1464|consen 277 VLANMLMKSG----------------------INPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-N 332 (440)
T ss_pred HHHHHHHHcC----------------------CCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-c
Confidence 3333333333 111110 001225566777888888854 556666666655432 4
Q ss_pred CCCCHHHHHHHHHHhhhh
Q 007970 510 IPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 510 ~~p~~~~~~~~~~~~l~~ 527 (583)
+..|+-.-..+ -+++..
T Consensus 333 IM~DpFIReh~-EdLl~n 349 (440)
T KOG1464|consen 333 IMDDPFIREHI-EDLLRN 349 (440)
T ss_pred ccccHHHHHHH-HHHHHH
Confidence 55555443333 445544
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.05 E-value=3.5 Score=39.64 Aligned_cols=137 Identities=14% Similarity=0.177 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY-GSLA 435 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~ 435 (583)
...|...+.+..+....+.|..+|-++.+..-+.+++..+++++.-++ .|+..-|..+|+--... .||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 345677777777888899999999999876446788888999987665 56788888998876654 3455444 4556
Q ss_pred HHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
.-+...++-+.|..+|+..+.+- ..+ ..+|..++.-=..-|+...+..+-+.|.+ +.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~-----------------~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL-----------------EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH-----------------HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCc
Confidence 66778899999999999777652 333 36788888877888888888888888865 4555
Q ss_pred HH
Q 007970 514 KT 515 (583)
Q Consensus 514 ~~ 515 (583)
..
T Consensus 535 en 536 (660)
T COG5107 535 EN 536 (660)
T ss_pred Hh
Confidence 43
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.03 E-value=0.17 Score=44.82 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=77.4
Q ss_pred CcCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChhHHH
Q 007970 55 KPDTAAYNAVLNACANL-----GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA----------------SRKHLLV 113 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~ 113 (583)
..|-.+|-+.+..|... +..+-....++.|.+.|++.|..+|+.||+.+-+- .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44777888888888643 44566667788999999999999999999876433 2334578
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHcCCChH-HHHHHHHHHH
Q 007970 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMR 155 (583)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 155 (583)
.++++|...|+.||..+-..|++++.+.+-.- +..+++-.|+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999998887653 3334443444
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.91 E-value=1.7 Score=35.31 Aligned_cols=86 Identities=8% Similarity=0.021 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcC
Q 007970 62 NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141 (583)
Q Consensus 62 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (583)
..++..+.+.+.......+++.+...+. .+....+.++..|++.. ....++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4567777777888888888888887764 56777888888887653 3333344332 12334445577777777
Q ss_pred CChHHHHHHHHHHH
Q 007970 142 GDLEIAETIVQAMR 155 (583)
Q Consensus 142 g~~~~A~~~~~~~~ 155 (583)
+.++++.-++..+.
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 77777777776653
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.78 E-value=1.5 Score=34.24 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (583)
.|..++..++..+..... +..-++-+|.-....-+=+-..++++.+-+-+.+.+-. -...++.+|+..|.
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK------ 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc------
Confidence 455666666666655431 33344444443333334444455555554422211110 11233333333332
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 007970 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494 (583)
Q Consensus 415 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 494 (583)
+.......+..+...|+-++-.+++..+.+.. +++...+.-+..+|.+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-----------------~~~p~~L~kia~Ay~klg~ 135 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-----------------EINPEFLVKIANAYKKLGN 135 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH----------------------S-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-----------------CCCHHHHHHHHHHHHHhcc
Confidence 23344455556667777777777776665421 5666777777777777777
Q ss_pred HHHHHHHHHHHHHcCC
Q 007970 495 FRKALEIVACMEEHGI 510 (583)
Q Consensus 495 ~~~A~~~~~~~~~~~~ 510 (583)
..++.+++++.-+.|+
T Consensus 136 ~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 136 TREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred hhhHHHHHHHHHHhch
Confidence 7777777777776665
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.54 E-value=1 Score=40.27 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcchhHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK--PDVLTYNVMIKLCARASRKHLLVFVLERILEMG--ITLCMTTFQS 133 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 133 (583)
...|+.-+..+ +.|++..|...|....+..+. -....+-.|..++...|++++|..+|..+.+.- .+--+..+.-
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 33677776665 778899999999999986421 123345668999999999999999999998853 1223467888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhhHHHHHH
Q 007970 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164 (583)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 164 (583)
|..+..+.|+.++|...|+.+.+..|.....
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 8999999999999999999999987765543
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=3.2 Score=43.17 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
.+.|++++|...|-+-... +.| ..++.-|....+...-..+++.+.+. |.. +...-+.|+.+|.+.++.++-
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcchHHH
Confidence 3556666666655554432 222 12333444444555555555555553 322 223334556666666666665
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
.++.+... .|.. ..-....+..|.+.+-.++|.-+..+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 55554432 1211 11123344444455555555444433
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.37 E-value=4.4 Score=37.77 Aligned_cols=232 Identities=9% Similarity=-0.049 Sum_probs=136.0
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHhCCC-CCCHHHHHHHHHHHHhc
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL----AEMTRIGV-PANRITYNILLKGYCQQ 299 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~----~~~~~~~~-~~~~~~~~~l~~~~~~~ 299 (583)
...+.+.|+..+.+...+.. .....-.++..+..+.++.|.+++++..- +...+..- ..-...|..+.+++.+.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~-~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLS-DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred cCchHHHHHHHHHHHHHHHH-HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665544310 01112345566667777778777655432 22222110 01123445566666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcC
Q 007970 300 LQIDKAKELLREMADDAKIEPD---VVSYNILIDGFILIDDSAGALTFFNEMRARGIA-----PTKISYTTLMKAFALSS 371 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~~ 371 (583)
-++.+++.+-+.-....|..|. -.....+..++...+.++++++.|+...+.-.. .....+..+...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6667777666555444444331 133445667778888899999999887653211 12356888888899999
Q ss_pred CHHHHHHHHHHHhc---CCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHH
Q 007970 372 QPKLANKVFDEMLR---DPRVKVDI-----VAWNMLVEGYCRMGLVEEAKRIIERMK----ENGFYPN-VATYGSLANGI 438 (583)
Q Consensus 372 ~~~~a~~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~p~-~~~~~~l~~~~ 438 (583)
++++|.-+..+... ..++..-. .....+.-++...|+.-+|.+.-++.. ..|-.|. ......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99988776655432 22222111 222334456777888888888777654 3443321 23455667789
Q ss_pred HhcCCHhHHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKER 457 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (583)
...|+.+.|+.-|+.+...
T Consensus 257 R~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HhcccHhHHHHHHHHHHHH
Confidence 9999999998888876654
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.32 E-value=5.5 Score=39.05 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
.+-..+..++.+.|+.++|.+.+.++.+......+......|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3334566667788888899998888887433223455677888888888899998888888754
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=3.4 Score=36.24 Aligned_cols=177 Identities=12% Similarity=0.051 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
|.....+|....++++|...+.+..+-. ..+...|. ..+.++.|..+.+++... .--...|.-....|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3334445666666776666665554211 11111111 112234444444444432 111233444445556
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCC
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN---G--FYPNVATYGSLANGISLARK 443 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g--~~p~~~~~~~l~~~~~~~g~ 443 (583)
.+|.++.|-..+++.-+ ..+.-++++|+++|++.... + .+.-...+....+.+.+..+
T Consensus 103 E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 66666655555554432 12233455555555544321 0 00111233444445555666
Q ss_pred HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+.+|-..+.+-....... .--|+. ..|...|-.+....++..|.+.++.-
T Consensus 166 f~Eaa~a~lKe~~~~~~~------------~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKC------------DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHHHHHHHHhhhHHHHH------------hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 666555444322110000 012232 44555555666666777777777664
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.24 E-value=0.93 Score=40.53 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHcCCHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPT---KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-IVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 410 (583)
.|++..|...|...++.. +-+ ...+-.|..++...|+++.|..+|..+.+.+...|. +..+.-|..+..+.|+.+
T Consensus 154 sgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344555555555555431 111 122334455555555555555555555543332222 244444555555555555
Q ss_pred HHHHHHHHHHHC
Q 007970 411 EAKRIIERMKEN 422 (583)
Q Consensus 411 ~A~~~~~~~~~~ 422 (583)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.16 E-value=0.53 Score=41.92 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHhHHHHH
Q 007970 392 DIVAWNMLVEGYCRM-----GLVEEAKRIIERMKENGFYPNVATYGSLANGISLA----------------RKPGEALLL 450 (583)
Q Consensus 392 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----------------g~~~~a~~~ 450 (583)
|..+|...+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+. .+-+=++.+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 444444444444322 33444444555566666666666666666554321 223347889
Q ss_pred HHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhh-HHHHHHHHHHHH
Q 007970 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF-FRKALEIVACME 506 (583)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 506 (583)
+++|... |+.||..+-..|++++.+.|. ..+..+++-.|.
T Consensus 146 LeqME~h----------------GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWH----------------GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHc----------------CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999887 899999999999999977665 234444444443
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.07 E-value=11 Score=41.19 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=41.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVA--TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
+.+|..+|+|.+|+.+..++... -|.. +-..|+..+...+++-+|-++..+.... |
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------------------~ 1029 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------------------P 1029 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------------------H
Confidence 44555555666665555554321 1111 1244555566677777776666665432 1
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 478 DEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 478 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
.-.+..|++...|++|.++....
T Consensus 1030 -----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1030 -----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 12233455566677777766654
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.03 E-value=3 Score=34.48 Aligned_cols=132 Identities=12% Similarity=0.057 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH-
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA-TYGSL- 434 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l- 434 (583)
..|...++ +.+.+..++|+.-|..+.+. |...- .-............|+-..|...|+++-...-.|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444444 34567777788888777653 32221 1222233445567788888888888876542233222 11111
Q ss_pred -HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 435 -ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 435 -~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
...+...|.+++...-.+.+-.. +-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d----------------~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGD----------------GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCC----------------CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12245677777776665554332 1122335556677777788888888888888764
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.84 E-value=1.7 Score=33.84 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=48.3
Q ss_pred HHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHH---H
Q 007970 19 RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL---T 95 (583)
Q Consensus 19 ~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~ 95 (583)
+++..|+ .+.|++.|.+.+.. .|.....||.-..++--.|+.++|++=+++..+..-..... +
T Consensus 52 alaE~g~--Ld~AlE~F~qal~l------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 52 ALAEAGD--LDGALELFGQALCL------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHhccc--hHHHHHHHHHHHHh------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 4555555 66666666666553 34455666666666666666666666666655541111111 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 96 YNVMIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
|..-...|...|+.+.|..=|+...+.|
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 2222334445566666666666555555
No 260
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.84 E-value=0.86 Score=43.80 Aligned_cols=142 Identities=12% Similarity=0.054 Sum_probs=91.2
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHH
Q 007970 402 GYCRMGLVEEAKRIIERMKE-NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 480 (583)
--...|+.-.|-+-+...+. ..-.|+...+. ...+...|.++.+.+.+...... +.....
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-----------------~~s~~~ 358 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-----------------IGTTDS 358 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-----------------hcCCch
Confidence 33456777666554444443 32234444333 34466889999999888766543 345567
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC--
Q 007970 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL-- 558 (583)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-- 558 (583)
+..++++...+.|++++|...-+-|....+.. ++.. .+-.... +.-|-++++..+|+.+
T Consensus 359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~-~ei~-----~iaa~sa-------------~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 359 TLRCRLRSLHGLARWREALSTAEMMLSNEIED-EEVL-----TVAAGSA-------------DALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHhccccCC-hhhe-----eeecccH-------------HHHhHHHHHHHHHHHHhc
Confidence 88889999999999999999999887544432 2211 1111111 1128899999999887
Q ss_pred CCCCCCcccccCCCCCCCcccCC
Q 007970 559 PNSYYGSEWRLDPMDGDEYITGD 581 (583)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~ 581 (583)
-++|..++|........---+||
T Consensus 420 ~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 420 LNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred cCChhcccceeeeccceeccCcc
Confidence 67777999998776554444444
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.81 E-value=1.8 Score=34.65 Aligned_cols=65 Identities=3% Similarity=-0.020 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGA--KPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
..+-.-.....+.|++++|.+.|+.+..+-. .-...+--.|+.++.+.++++.|...+++.++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3334455556688999999999999988622 1234556678899999999999999999999975
No 262
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.50 E-value=0.05 Score=44.60 Aligned_cols=130 Identities=11% Similarity=0.112 Sum_probs=90.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCC
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG 142 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 142 (583)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35677788899999999999999877667788899999999999888888887761 12234456788888889
Q ss_pred ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 007970 143 DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222 (583)
Q Consensus 143 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 222 (583)
.+++|.-++..+.... .........++++.|.+.+.+. .+...|..++..
T Consensus 85 l~~~a~~Ly~~~~~~~-----------~al~i~~~~~~~~~a~e~~~~~-------------------~~~~l~~~l~~~ 134 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHD-----------EALEILHKLKDYEEAIEYAKKV-------------------DDPELWEQLLKY 134 (143)
T ss_dssp SHHHHHHHHHCCTTHT-----------TCSSTSSSTHCSCCCTTTGGGC-------------------SSSHHHHHHHHH
T ss_pred hHHHHHHHHHHcccHH-----------HHHHHHHHHccHHHHHHHHHhc-------------------CcHHHHHHHHHH
Confidence 8888888877654311 0011234556667777555543 567888888888
Q ss_pred HHhcCCh
Q 007970 223 YMNEGRV 229 (583)
Q Consensus 223 ~~~~g~~ 229 (583)
+...+..
T Consensus 135 ~l~~~~~ 141 (143)
T PF00637_consen 135 CLDSKPF 141 (143)
T ss_dssp HCTSTCT
T ss_pred HHhcCcc
Confidence 8766543
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.49 E-value=0.2 Score=30.91 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.++..+..+|...|++++|+++|+++++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36778889999999999999999999987
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.37 E-value=3.6 Score=33.34 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=22.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 256 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
.++..+...+.......+++.+...+ +.+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44455555555555555555555544 24455555555555543
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.35 E-value=0.28 Score=30.27 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 96 YNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
+..+...|.+.|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.13 E-value=5.9 Score=35.10 Aligned_cols=222 Identities=18% Similarity=0.075 Sum_probs=143.0
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 265 GSMDRARQVLAEMTRIGVP-ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
+....+...+......... ............+...+.+..+...+...............+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544321 134566667777777888888887777765311223445566666666777777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 344 FFNEMRARGIAPTKISYTTLMK-AFALSSQPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
.+.........+ ......... .+...|+++.|...+...... .. ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888877653332 122222222 677888888888888887541 11 1233444444445677888899998888888
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHH
Q 007970 421 ENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKA 498 (583)
Q Consensus 421 ~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 498 (583)
.. ... ....+..+...+...+.++.+...+...... .|+ ...+..+...+...+.++++
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL------------------DPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh------------------CcccHHHHhhHHHHHHHcCCHHHH
Confidence 75 233 3667777778888888889999888888865 444 44555555555566778888
Q ss_pred HHHHHHHHH
Q 007970 499 LEIVACMEE 507 (583)
Q Consensus 499 ~~~~~~~~~ 507 (583)
...+.....
T Consensus 256 ~~~~~~~~~ 264 (291)
T COG0457 256 LEALEKALE 264 (291)
T ss_pred HHHHHHHHH
Confidence 888888764
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=14 Score=38.78 Aligned_cols=121 Identities=16% Similarity=0.111 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 12 AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD--TAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 12 ~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
....-|+.+.+... +.-|+.+-..-. ..++ ...+..-...+.+.|++++|...|-+-... +
T Consensus 336 ~le~kL~iL~kK~l--y~~Ai~LAk~~~--------------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-l 398 (933)
T KOG2114|consen 336 DLETKLDILFKKNL--YKVAINLAKSQH--------------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-L 398 (933)
T ss_pred cHHHHHHHHHHhhh--HHHHHHHHHhcC--------------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-C
Confidence 34455677777766 788877654421 2222 123333344455788888888888776542 2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 155 (583)
+|+ .+|.-|....+......+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...
T Consensus 399 e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 399 EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred ChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 232 2455555556666677778888888754 55555678888888888877777665554
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.88 E-value=3.8 Score=32.18 Aligned_cols=139 Identities=12% Similarity=0.199 Sum_probs=70.3
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342 (583)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 342 (583)
-.|.+++..++..+..... +..-+|.+|--....-+-+-..++++.+-+. -|. ...|+.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-G----------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------hhhcchHHHH
Confidence 3466677777777666532 3444444443333333334444444444321 121 1223333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 343 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
..+-.+ ..+.......+.++...|+-++-.+++..+.+ .-.+++...-.+..+|.+.|+..++.+++.++-+.
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 322221 12344556666777777888888888877765 34567777777788888888888888888888777
Q ss_pred CCC
Q 007970 423 GFY 425 (583)
Q Consensus 423 g~~ 425 (583)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 753
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.72 E-value=2.9 Score=35.51 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE--ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+..+..-|.+.|+.++|++.|.++.+.+ ..|.. ..+..+++.+...|++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~----------------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC----------------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc----------------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 457788888999999999999999988863 34443 677888999999999999999999886
Q ss_pred HcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007970 507 EHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYG 564 (583)
Q Consensus 507 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 564 (583)
..--.+.+.....- +.++... .....+.+.+|-+.+-..+....+
T Consensus 101 ~~~~~~~d~~~~nr-lk~~~gL------------~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 101 SLIEKGGDWERRNR-LKVYEGL------------ANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHhccchHHHHHH-HHHHHHH------------HHHHhchHHHHHHHHHccCcCCCC
Confidence 43222222222211 1222211 123347899999888887655543
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.71 E-value=1.7 Score=39.58 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE-----NGFYPNVATYG 432 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 432 (583)
.++..++..+...++.+.+...++.+.. -.+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567788888888999999999999887 4567888999999999999999999999988764 68888888777
Q ss_pred HHHHH
Q 007970 433 SLANG 437 (583)
Q Consensus 433 ~l~~~ 437 (583)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66665
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.61 E-value=7.2 Score=34.77 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
-+..-.+.|++++|.+.|+.+..+.+ ..+-...+...++-++.+.++++.|....++....
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33444566777777777777665421 12222445555555666666666666666665543
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.42 E-value=1.3 Score=40.19 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCcchhHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE-----MGITLCMTTFQ 132 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 132 (583)
..++..++..+...|+++.+.+.++.+..... -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 56788899999999999999999999988865 5888899999999999999999999888765 58888888877
Q ss_pred HHHHHHHc
Q 007970 133 SLVAAYVG 140 (583)
Q Consensus 133 ~l~~~~~~ 140 (583)
.......+
T Consensus 232 ~y~~~~~~ 239 (280)
T COG3629 232 LYEEILRQ 239 (280)
T ss_pred HHHHHhcc
Confidence 77766433
No 273
>PRK11906 transcriptional regulator; Provisional
Probab=92.19 E-value=12 Score=36.55 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 302 IDKAKELLREMADDAKIEPDV-VSYNILIDGFIL---------IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
.+.|+.+|.+....+...|+- ..|..+..++.. ..+..+|.++-+...+.+ +.|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 567777788777444445543 333333333221 223456677777777765 557777777777778888
Q ss_pred CHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHhHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVD-IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT---YGSLANGISLARKPGEA 447 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~~a 447 (583)
+.+.|...|++... +.|| ..+|......+.-.|+.++|.+.+++..+. .|.... ....+..|. ....+.|
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~-~~~~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYV-PNPLKNN 426 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHc-CCchhhh
Confidence 89999999999876 3344 455555556667789999999999997764 454332 222333444 3456777
Q ss_pred HHHHHH
Q 007970 448 LLLWKE 453 (583)
Q Consensus 448 ~~~~~~ 453 (583)
+.+|-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 777654
No 274
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.13 E-value=4 Score=32.79 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=62.3
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
|....|+.-..++ +.|+ +.+|+..|+.+.... ...+-...+--.++.+|.+.+++++|+..++.+.+.
T Consensus 9 ~~~~ly~~a~~~l-~~~~--Y~~A~~~le~L~~ry---------P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGN--YEEAIKQLEALDTRY---------PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred CHHHHHHHHHHHH-HhCC--HHHHHHHHHHHHhcC---------CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455666666666 4666 999999999998751 112224567778999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 007970 88 GAKPDVLTYNVMIKLCARA 106 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~ 106 (583)
.+.--..-|...+.+++.-
T Consensus 77 hP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 77 HPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred CCCCCCccHHHHHHHHHHH
Confidence 6543344566666665543
No 275
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.94 E-value=13 Score=36.07 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 401 (583)
.+|...+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+..-|..+|+.-... .+.+..--+-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456667777777888899999999999988 6778888999998765 58888999999887763 3334444456677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPN--VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
-+...++-+.|..+|+..... +..+ ...|..++.-=..-|+...+..+=+++...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 788899999999999976653 3333 457888888888899999998888888765
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.77 E-value=16 Score=36.85 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
..+|...+.--...|+.+.+.-+|+...- ....-...|--.+......|+.+-|..++....+-- .|+......+-.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a 373 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHH
Confidence 34555556556666777777666666654 223334455555555555666666666666555432 222222221211
Q ss_pred -HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 -GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 -~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..-..|++..|..+++.+.+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh
Confidence 233456777777777777664
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=8.7 Score=33.64 Aligned_cols=19 Identities=5% Similarity=0.223 Sum_probs=11.6
Q ss_pred HhcCCHhHHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKER 457 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (583)
+..+++.+|+.+|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666554
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.66 E-value=7.6 Score=32.97 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG-----SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
.+...+...+++++|..-++..... |....+. .|.+.....|.+++|+..+......
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--------------- 155 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--------------- 155 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---------------
Confidence 3456677888999998888877643 2223333 3445567788999998888765533
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 473 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
.-.......-.+++...|+-++|..-|++.++..
T Consensus 156 ---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 ---SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 1122334445678888899999999999988754
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.65 E-value=24 Score=38.75 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 007970 319 EPDVVSYNILIDG----FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394 (583)
Q Consensus 319 ~~~~~~~~~li~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 394 (583)
.|+...+..+..+ +.....+++|.-.|+..-+ ..-.+.+|..+|++.+|..+...+... .+..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~----~de~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG----KDEL 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC----HHHH
Confidence 3555554444433 4456667777666654322 133566777888888888888776541 2222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007970 395 --AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455 (583)
Q Consensus 395 --~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (583)
+-..|+.-+...+++-+|-+++.+.... | ...+..|++...+++|+.......
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2256777788888888888888777642 1 223334556667788877665443
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.59 E-value=3.9 Score=34.77 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD--HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
...+..+...|++.|+.++|++.|.++... ...+. ...+..+|..+.-.+++..+...+.++...-.........
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 456788899999999999999999998875 22332 4566778888888899998888887766432221111111
Q ss_pred HHHH-----HHHhcCCHHHHHHHHHHHH
Q 007970 291 ILLK-----GYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 291 ~l~~-----~~~~~~~~~~A~~~~~~~~ 313 (583)
.-+. .+...+++..|-+.|-...
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 1111 2334677888887776664
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.51 E-value=8 Score=32.92 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=67.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNV-----ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (583)
-+.+.|++++|..-|.+.++. +++.. ..|..-..++.+.+.++.|+.-..+.++. .
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------------------~ 164 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------------------N 164 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------------------C
Confidence 456788888888888888875 33322 23444455677888888888888887764 6
Q ss_pred CCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 477 PDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 477 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
|+. ..+..-..+|.+...+++|+.-|+++++ ..|...-..
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ear 205 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRREAR 205 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchHHHH
Confidence 653 5555556788888999999999999886 456555433
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.39 E-value=0.57 Score=27.31 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHH
Q 007970 431 YGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555555
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.35 E-value=21 Score=37.52 Aligned_cols=132 Identities=9% Similarity=0.151 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHH-HHHHHhcCCcchHHHHHHHHHHCC---CC
Q 007970 15 TVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV-LNACANLGKPKKFLQLFDQMHEFG---AK 90 (583)
Q Consensus 15 ~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~ 90 (583)
.++..+.+.+. .. |+..+++.++.+... +..+-...|.-+ +..+...+++..|.+.++.+...- ..
T Consensus 105 ll~~i~~~~~~--~~-a~~~l~~~I~~~~~~-------~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 105 LLARIYFKTNP--KA-ALKNLDKAIEDSETY-------GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHhcCH--HH-HHHHHHHHHHHHhcc-------CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 44566666654 34 888888888764331 122334455544 444444589999999998886642 23
Q ss_pred CCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHhCC---------CcchhHHHHHHHHH--HcCCChHHHHHHHHHHHh
Q 007970 91 PDVLTYNVMIKLCA--RASRKHLLVFVLERILEMGI---------TLCMTTFQSLVAAY--VGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 91 ~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 156 (583)
|-...+-.++.+.. +.+..+++.+....+..... .|...+|..+++.+ ...|++..+...++.+..
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555544 34556677777776643221 23455666666554 566777788877776654
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.34 E-value=7.5 Score=32.25 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT-YNILLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
...|...++ +.+.+..++|+.-|..+.+.|...-+.. .-.........|+-..|...|+++-.
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 344544444 2345556666666666666553221111 11122233445555556666655533
No 285
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.21 E-value=2.8 Score=38.18 Aligned_cols=114 Identities=9% Similarity=0.052 Sum_probs=83.4
Q ss_pred cccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcc
Q 007970 51 VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF---GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127 (583)
Q Consensus 51 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 127 (583)
..|.+.++.+-..++..-....+.+++...+-.+... ...|+... .++++.|. .-+.++++.++..=+..|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 3566667777788888888888999999998888753 11122211 22334333 2367799999988899999999
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHH
Q 007970 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166 (583)
Q Consensus 128 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 166 (583)
..++..+|+.+.+.+++.+|.++.-.|.....-....+.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~nell~ 173 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENELLQ 173 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999998887765543333333
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.13 E-value=8 Score=32.22 Aligned_cols=135 Identities=12% Similarity=0.152 Sum_probs=75.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 007970 78 LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157 (583)
Q Consensus 78 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 157 (583)
.+.++.+.+.++.|+...+..++..+.+.|++.... .++..++-+|.......+-.+.. ....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 345556666777788888888888888887765443 34455555555544433322221 222233322222221
Q ss_pred hHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007970 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237 (583)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (583)
+ ...+..++..+...|++-+|+++.+
T Consensus 88 ---------------------------------L---------------------~~~~~~iievLL~~g~vl~ALr~ar 113 (167)
T PF07035_consen 88 ---------------------------------L---------------------GTAYEEIIEVLLSKGQVLEALRYAR 113 (167)
T ss_pred ---------------------------------h---------------------hhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 0 1134566777888888888888877
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007970 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279 (583)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 279 (583)
..... ..++ ...++.+..+.+|...-..+++...+
T Consensus 114 ~~~~~----~~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 114 QYHKV----DSVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HcCCc----ccCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65332 1122 24466666666766655555555544
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.98 E-value=0.59 Score=27.25 Aligned_cols=26 Identities=31% Similarity=0.180 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999854
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.94 E-value=14 Score=34.54 Aligned_cols=131 Identities=11% Similarity=0.155 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCC--
Q 007970 339 AGALTFFNEMRARGIAPTKISYTTLMKAFAL--SS----QPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGL-- 408 (583)
Q Consensus 339 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~-- 408 (583)
++.+.+++.|.+.|..-+..+|.+..-.... .. ....|..+|+.|.+.+.+ .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3456677888888877776666553333322 22 245678888888876443 2344455555433 3333
Q ss_pred --HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHH
Q 007970 409 --VEEAKRIIERMKENGFYPNV--ATYGSLANGISLARK--PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482 (583)
Q Consensus 409 --~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 482 (583)
.+.+..+|+.+.+.|+..+- .....++..+..... ..++.++++.+.+. ++++....|
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~----------------~~kik~~~y 220 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN----------------GVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc----------------CCccccccc
Confidence 35567777888777766532 233333332222111 34677777777776 566666556
Q ss_pred HHHHH
Q 007970 483 DALAD 487 (583)
Q Consensus 483 ~~l~~ 487 (583)
..+.-
T Consensus 221 p~lGl 225 (297)
T PF13170_consen 221 PTLGL 225 (297)
T ss_pred cHHHH
Confidence 55543
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.84 E-value=10 Score=32.84 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
.||.-+...+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45556666666667777777777666554
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.52 E-value=1.1 Score=25.42 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+|..+..+|...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677777888888888888888888775
No 291
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.02 E-value=13 Score=32.79 Aligned_cols=222 Identities=18% Similarity=0.088 Sum_probs=159.9
Q ss_pred cCChhHHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHP--DHVTYTTVVSALVKAGSMDRARQVLAEMTRI-GVPANRITYNILLKGYCQQLQI 302 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 302 (583)
.+....+...+...... ... ....+......+...+.+..+...+...... ........+......+...+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 36 LGELAEALELLEEALEL----LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred HhhHHHHHHHHHHHHhc----CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 46666677777776654 121 3567777888888999999999988887752 2345666777777888888999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 303 DKAKELLREMADDAKIEPDVVSYNILID-GFILIDDSAGALTFFNEMRARGI--APTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 303 ~~A~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
..+...+........ .+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...
T Consensus 112 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 112 EEALELLEKALALDP-DP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHHHHHcCCC-Cc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 999999998865322 11 222233333 68899999999999999865321 12334444444456778899999999
Q ss_pred HHHHhcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 380 FDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 380 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+...... .+. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+++...+......
T Consensus 190 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 190 LEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999873 334 4677888888999999999999999999875 344 445555555555777899999999988876
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.67 E-value=0.56 Score=26.93 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFL 78 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~ 78 (583)
-|-++.+|+.+..+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3557899999999999999999886
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.22 E-value=0.52 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=20.8
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHcCCChHHHH
Q 007970 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148 (583)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (583)
|++.++.. |-+...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455554 556677777777777777777764
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.14 E-value=24 Score=34.77 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC-hHHHHHHHHHHHhhhHHHHHHHHhh
Q 007970 92 DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD-LEIAETIVQAMREGRRDVCKIIREL 168 (583)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ 168 (583)
|+..|...+..|-+.+.+.+...+|.+|.... +.++..|.....-....+. ++.|..+|..-....|+.+.....+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 77777777777766666777777777777653 4444455444333333333 7777777777766666655544433
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.14 E-value=1.5 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.065 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+..+...+...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777788888888888888888765
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=3.4 Score=37.66 Aligned_cols=98 Identities=10% Similarity=0.162 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007970 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARG---IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397 (583)
Q Consensus 321 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (583)
...+-..++..-....+++.++..+-+++... ..|+ .+-..+++.|. .-++++++.++..-++ +|+.||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcch-hccccchhhHH
Confidence 33344444444444555666666655554421 0111 11122222222 2345555555555444 46666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
.+|+.+.+.+++.+|.++.-.|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666555543
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.92 E-value=7.1 Score=29.05 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 007970 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 388 (583)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.+..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 4445555555556667777777777777777777777777766665433
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.71 E-value=19 Score=32.84 Aligned_cols=58 Identities=9% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 277 (583)
++.....|..+|.+.+|.++.+..... -+.+...+..++..+...|+--.+.+.++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl----dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL----DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344445666666666666666666553 3445555666666666666655555555444
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.18 E-value=1.5 Score=24.87 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677777888888888888888887763
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.87 E-value=33 Score=35.55 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKG-----YCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~ 314 (583)
...+.+.++...+.| +......+..+ +....+.+.|..+|+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 345666666666655 22222222222 2234566666666666543
No 301
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.80 E-value=6.4 Score=28.93 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|+++++....+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666777776677888888888888888888888888888877655
No 302
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.77 E-value=26 Score=33.33 Aligned_cols=173 Identities=12% Similarity=0.099 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHhHHHH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL---ARKPGEALL 449 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~ 449 (583)
.+.-+.+++++.+. .+.+...+..++..+.+..+.++..+-++++.... +-+...|..++..... .-.++....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 34556777777763 34667777778888888888888888888888752 2356677777765433 335667777
Q ss_pred HHHHHHHHhhhhhccccCCCCCCCCCCCC--H---HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Q 007970 450 LWKEIKERCEVKKEGVNADSDLPPPLKPD--E---ELLDALADICVRAAFFRKALEIVACMEEHGI-PPNKTKYKKIYVE 523 (583)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~ 523 (583)
+|.+..+.......+... .+.-.++ . .++..+...+..+|..+.|..+++.+.+.++ .|....-... .
T Consensus 124 ~y~~~l~~L~~~~~~~~~----~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~-~- 197 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMT----SHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSF-S- 197 (321)
T ss_pred HHHHHHHHHHHhhccccc----cccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccH-H-
Confidence 777666653322222100 0001111 1 2333444556788999999999999998765 3444211110 0
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhc-C--CCCCCCcccccCCCCCCC
Q 007970 524 MHSRMFTSKHASQARQDRRRERKRAAEAFKFWLG-L--PNSYYGSEWRLDPMDGDE 576 (583)
Q Consensus 524 ~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~--~~~~~~~~~~~~~~~~~~ 576 (583)
...+.=.++|.. . -+.|.+.+|+.....+.+
T Consensus 198 ----------------------~~~~~fe~FWeS~vpRiGE~gA~GW~~~~~~~~~ 231 (321)
T PF08424_consen 198 ----------------------ERLESFEEFWESEVPRIGEPGAKGWRKWMEQGEE 231 (321)
T ss_pred ----------------------HHHHHHHHHhCcCCCCCCCCCcchhhhhhccccc
Confidence 223333356654 3 456668999988754443
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.46 E-value=1.6 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..+..+..++.+.|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567788999999999999999999875
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.30 E-value=15 Score=30.79 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHH
Q 007970 409 VEEAKRIIERMKENGFYPNVATYGSLANGI---SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDA 484 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~ 484 (583)
++.|.+.++.-...+ +.|...++.-..++ ++.....++.++++..+++..... .+.|+. .++.+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL-----------~I~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL-----------KINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-----------HH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH-----------hcCCchHHHHHH
Confidence 455555555533331 34555444444443 333443445455544444322110 248886 88888
Q ss_pred HHHHHHhhhh-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 485 LADICVRAAF-----------FRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 485 l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
+..+|...+. |++|...|++..+ ..|+...|+.. +++..+
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ks-Le~~~k 125 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKS-LEMAAK 125 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHH-HHHHHT
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHH-HHHHHh
Confidence 8888866544 5666666666654 68999999887 555544
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.83 E-value=11 Score=28.11 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 76 KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 76 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 566667777777888999999999999999999999999998887652 333335655543
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.38 E-value=6.2 Score=36.48 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=31.8
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
-|.+.|.+++|+..|...+. -.+.+.+++..-..+|.+..++..|..-....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 36667777777777766554 223366666666666666666665555444444
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.29 E-value=8 Score=33.15 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHH
Q 007970 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489 (583)
Q Consensus 410 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 489 (583)
+.|.+.|-.+...+.--++.....|...| ...+.++++.++-++.+.... +-.+|...+.+|+..+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~-------------~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNP-------------DDNFNPEILKSLASIY 188 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC-------------CCCCCHHHHHHHHHHH
Confidence 45555555555444333333333333333 345666666666665554211 1245556666666666
Q ss_pred HhhhhHHHH
Q 007970 490 VRAAFFRKA 498 (583)
Q Consensus 490 ~~~g~~~~A 498 (583)
.+.|+++.|
T Consensus 189 ~~~~~~e~A 197 (203)
T PF11207_consen 189 QKLKNYEQA 197 (203)
T ss_pred HHhcchhhh
Confidence 666666655
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.12 E-value=33 Score=32.98 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPR--VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
...++..+++.+.+.|.++.|...+..+..... ....+.....-...+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666777777777777777777777655210 000233334445556667777777777766665
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.06 E-value=13 Score=37.39 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
..+.++..+.+.|-.++|+++- ..|+.. .....+.|+++.|.++..+.. +..-|..|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s----------~D~d~r-----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS----------TDPDQR-----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGD 674 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC----------CChhhh-----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHH
Confidence 3455566666666666665441 222211 122345567776666654432 4455677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 374 (583)
+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |...-++...|+++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYE 738 (794)
T ss_pred HHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHH
Confidence 77777777777777665521 444555555566665555555555554421 22222444566666
Q ss_pred HHHHHHHHH
Q 007970 375 LANKVFDEM 383 (583)
Q Consensus 375 ~a~~~~~~~ 383 (583)
++.+++..-
T Consensus 739 ~C~~lLi~t 747 (794)
T KOG0276|consen 739 ECLELLIST 747 (794)
T ss_pred HHHHHHHhc
Confidence 666665444
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.92 E-value=18 Score=29.79 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=9.6
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~ 421 (583)
+...|+|.+|+++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4445555555555555443
No 311
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.92 E-value=50 Score=34.82 Aligned_cols=430 Identities=13% Similarity=0.089 Sum_probs=213.8
Q ss_pred CHHHHHHHHHHHH-hcCCcchHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChhHHHHHHHHHHHhC----CCc
Q 007970 57 DTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVL-----TYNVMIKLCARASRKHLLVFVLERILEMG----ITL 126 (583)
Q Consensus 57 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~ 126 (583)
+..++-.+...+. ...+++.|...+++.....-+++.. .-..++..+.+.+... |....++.++.- ..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4567777788876 7788999999999875543222221 1234566666666555 888888766542 122
Q ss_pred chhHHHHH-HHHHHcCCChHHHHHHHHHHHhhh---HHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCC
Q 007970 127 CMTTFQSL-VAAYVGFGDLEIAETIVQAMREGR---RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202 (583)
Q Consensus 127 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (583)
-...|.-+ +..+...++...|.+.++.+.... .+...........+......+..+++.+..+++......+
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~---- 212 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL---- 212 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc----
Confidence 23344434 333334479999999998776543 2222233333333444556677777777777663222111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhcc----cCC----------CC-------------CCHH-
Q 007970 203 PLLPKTFAPNSRIYTTLMKGYM--NEGRVSDTVRMLGAMRRQE----DNA----------SH-------------PDHV- 252 (583)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~----~~~----------~~-------------~~~~- 252 (583)
+..+....|...+|..+++.++ ..|+++.+...++.+...- ... ++ +...
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 0011113466777877776554 5677767766665554320 000 00 1111
Q ss_pred --------HHHHHHHH--HHHcCChHHH-------HHHHHHHH-hCCCCCCH--------HHHHHHHH---------HHH
Q 007970 253 --------TYTTVVSA--LVKAGSMDRA-------RQVLAEMT-RIGVPANR--------ITYNILLK---------GYC 297 (583)
Q Consensus 253 --------~~~~ll~~--~~~~g~~~~a-------~~~~~~~~-~~~~~~~~--------~~~~~l~~---------~~~ 297 (583)
.+..++.+ ....+..+++ .+..+... .....+.. ..+...+. ..+
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11122222 2233433344 44444444 11111111 11111111 223
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCC-----HHHHHH--HHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 007970 298 QQLQIDKAKELLREMADDAKIEPD-----VVSYNI--LIDGFILIDDSAGALTFFN--------EMRARGIAPTKISYTT 362 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~--li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~ 362 (583)
-.+++..|...+..+.+.....|+ ...+.. ..-.+...|+.+.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 468899999999888653322222 122222 2233456799999999997 4444444444444332
Q ss_pred H--HHHHHhcC--CHHH--HHHHHHHHhcCCCCCCC--HHHHHHH-HHHHHHcC--CHHHHHHHHHHHHH-----CCCCC
Q 007970 363 L--MKAFALSS--QPKL--ANKVFDEMLRDPRVKVD--IVAWNML-VEGYCRMG--LVEEAKRIIERMKE-----NGFYP 426 (583)
Q Consensus 363 l--~~~~~~~~--~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-i~~~~~~g--~~~~A~~~~~~~~~-----~g~~p 426 (583)
+ +-.+...+ ...+ +.++++.+.......++ ..++..+ +.++.... ...++...+.+..+ .+..-
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 2 11222222 2333 77777777553333332 3333443 33333221 12244444443322 11111
Q ss_pred -CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHH-----HHHHHHhhhhHHHH
Q 007970 427 -NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDA-----LADICVRAAFFRKA 498 (583)
Q Consensus 427 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~-----l~~~~~~~g~~~~A 498 (583)
-..+++.+...+. .|+..+.............. .|| ...|.. +...+...|+.++|
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k---------------~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKK---------------SSDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh---------------hhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 1112232222333 67777766655554332110 222 345533 33457788999999
Q ss_pred HHHHHHHHH
Q 007970 499 LEIVACMEE 507 (583)
Q Consensus 499 ~~~~~~~~~ 507 (583)
.....+...
T Consensus 597 ~~~~~~~~~ 605 (608)
T PF10345_consen 597 EEARQQLDR 605 (608)
T ss_pred HHHHHHHHH
Confidence 998887653
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.69 E-value=31 Score=32.22 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhc
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQ--QL----QIDKAKELLREMADD 315 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~ 315 (583)
+++.+.+++.+.+.|+.-+..++-+....... .. ....|..+|+.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 44567778888888877776665543322222 11 244566666666543
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=52 Score=34.58 Aligned_cols=101 Identities=8% Similarity=0.026 Sum_probs=67.0
Q ss_pred HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCc---CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHH
Q 007970 18 SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP---DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94 (583)
Q Consensus 18 ~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 94 (583)
+-+.+.+. +++|+.+-+... |.+| -...+...|..+.-.|++++|-...-.|.. -+..
T Consensus 364 ~Wll~~k~--yeeAl~~~k~~~-------------~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~ 424 (846)
T KOG2066|consen 364 DWLLEKKK--YEEALDAAKASI-------------GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAA 424 (846)
T ss_pred HHHHHhhH--HHHHHHHHHhcc-------------CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHH
Confidence 34445566 777776655443 2334 345678889999999999999999998886 4667
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHc
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (583)
-|..-+..+...++......+ +.......++.+|..++..+..
T Consensus 425 eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 425 EWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 777777777777666543332 2222223466788877777766
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.32 E-value=21 Score=29.86 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=15.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 345 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 376 (583)
++.+.+.+++|+...+..+++.+.+.|++...
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L 48 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL 48 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33344444555555555555555555544333
No 315
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.09 E-value=31 Score=31.63 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=91.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD--SAGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKL 375 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~ 375 (583)
+..+.+|+.+|+....+..+-.|..+...++.......+ ...-.++.+-+.. .+..++..+...++..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 334567777777442223345677777777776665221 2222223333322 3457788889999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM-----KENGFYPNVATYGSLANG 437 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~g~~p~~~~~~~l~~~ 437 (583)
-.+++.......+...|...|..+|....+.|+..-...+.++- .+.|+..+...-..+-..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 99999988775456678899999999999999988777776642 334455555544444333
No 316
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.05 E-value=5.9 Score=38.58 Aligned_cols=100 Identities=18% Similarity=0.098 Sum_probs=75.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATY-GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 479 (583)
.-+.+.+.++.|..++.++++. .||...| ..-..++.+.+++..|+.=+.++++. .|+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~------------------dP~~ 71 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL------------------DPTY 71 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc------------------Cchh
Confidence 3445667899999999999975 5655444 34447788999999999888888875 5654
Q ss_pred -HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007970 480 -ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522 (583)
Q Consensus 480 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 522 (583)
..|..-..+|.+.+.+.+|+..|+... .+.|+..-....+-
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~--~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVK--KLAPNDPDATRKID 113 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhh--hcCcCcHHHHHHHH
Confidence 566666678888999999999999887 37888877766633
No 317
>PRK09687 putative lyase; Provisional
Probab=84.95 E-value=33 Score=31.83 Aligned_cols=235 Identities=8% Similarity=0.011 Sum_probs=141.7
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHhCCCcchhH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK----HLLVFVLERILEMGITLCMTT 130 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 130 (583)
.+|.......+..+...|. +++...+..+.+. +|...-...+.++.+.|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4577777778888887775 4555555555542 5666666677788888764 4567777766443 356666
Q ss_pred HHHHHHHHHcCCCh-----HHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCC
Q 007970 131 FQSLVAAYVGFGDL-----EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205 (583)
Q Consensus 131 ~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (583)
-...+.++...+.. ..+...+.....
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~------------------------------------------------- 138 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF------------------------------------------------- 138 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh-------------------------------------------------
Confidence 66666666665432 223333322222
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCC
Q 007970 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG-SMDRARQVLAEMTRIGVPA 284 (583)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~ 284 (583)
.++..+-...+.++.+.++ .++...+-.+... ++...-...+.++.+.+ +-+.+...+..+.. .+
T Consensus 139 ----D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~ 204 (280)
T PRK09687 139 ----DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DK 204 (280)
T ss_pred ----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CC
Confidence 2455566666777777665 4566666666543 34444444555555443 23456666666664 35
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 364 (583)
+..+-...+.++.+.++. .|...+-..++. ++ .....+.++...|+. +|+..+..+... .||..+-...+
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~ 274 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAI 274 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHH
Confidence 667777788888888874 455544444442 22 234567778888875 688888887764 34777666666
Q ss_pred HHHH
Q 007970 365 KAFA 368 (583)
Q Consensus 365 ~~~~ 368 (583)
.+|.
T Consensus 275 ~a~~ 278 (280)
T PRK09687 275 DKLK 278 (280)
T ss_pred HHHh
Confidence 6654
No 318
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=84.82 E-value=27 Score=30.77 Aligned_cols=136 Identities=12% Similarity=0.152 Sum_probs=83.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
.+..|...-++.-|....+++.+ | ..+- +.+--|.+..+..-.-++.+-....+++-+.....+++ +...|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 34455555555555555555432 1 1111 22223455555555555555566666666666666655 45678
Q ss_pred CHHHHHHHHHHHhcCCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 372 QPKLANKVFDEMLRDPRV-----------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+..+|+..++.-...+|. .|++.....++..|. .+++++|.+.+.++-+.|+.|... .+.+.+++
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 888888888877664432 477777777777655 467999999999999999987543 34444443
No 319
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.69 E-value=17 Score=31.08 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=52.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVD-----IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLA 441 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 441 (583)
...|++++|..-|...+.. .++. ...|..-..++.+.+.++.|+.--.+.++.+ |+ ...+..-..+|.+.
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 4455666666666555542 2221 2344444556777788888887777777653 32 22333334567788
Q ss_pred CCHhHHHHHHHHHHHH
Q 007970 442 RKPGEALLLWKEIKER 457 (583)
Q Consensus 442 g~~~~a~~~~~~~~~~ 457 (583)
..+++|++-|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888888888888875
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.46 E-value=2.7 Score=25.07 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
..+++.+...|...|++++|..++++.....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3577888888888999999999988887753
No 321
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.07 E-value=4.5 Score=28.45 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=38.7
Q ss_pred hcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHH
Q 007970 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
...+.++|+..|+.+.+... -.|+. .++.+|+.+|...|++++++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~---------------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKIT---------------DREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999998731 13333 788889999999999999887644
No 322
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.99 E-value=14 Score=31.05 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC----C-------HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC
Q 007970 409 VEEAKRIIERMKENGFYPNV-ATYGSLANGISLAR----K-------PGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (583)
+++|+.-|++.+. +.|+. .++.++..+|...+ + +++|...|+++... +
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~------------------~ 110 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE------------------D 110 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc------------------C
Confidence 3444555555554 45654 57777777765543 2 45555666666554 9
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCC
Q 007970 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512 (583)
Q Consensus 477 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 512 (583)
|+..+|+.-+..+. +|-++..++.+.+..+
T Consensus 111 P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 111 PNNELYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp TT-HHHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred CCcHHHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 99999988776663 4566666666555433
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.58 E-value=3.5 Score=24.58 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888889999999999999888764
No 324
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.41 E-value=64 Score=33.98 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh-
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFAL- 369 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~- 369 (583)
....+.-+|.++.|.+.+-.. .....|..++...+..|.-.+-.+... ..+.... -.|....+..+|..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344556688888888887652 222345555555444333222211111 2222111 01122567777777765
Q ss_pred --cCCHHHHHHHHHHHhc
Q 007970 370 --SSQPKLANKVFDEMLR 385 (583)
Q Consensus 370 --~~~~~~a~~~~~~~~~ 385 (583)
..++.+|.++|--+..
T Consensus 338 F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 338 FEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTT-HHHHHHHHHGGGG
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 4567888888776654
No 325
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.30 E-value=51 Score=32.77 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN-RITYNI 291 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 291 (583)
..+-..+..+.-+.|+.++|.+.+.++.+.. ...........|+.++...+.+.++..++.+..+...+.+ ..+|+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 4444667788889999999999999998751 1111334677899999999999999999998765443333 344554
Q ss_pred HH
Q 007970 292 LL 293 (583)
Q Consensus 292 l~ 293 (583)
.+
T Consensus 337 AL 338 (539)
T PF04184_consen 337 AL 338 (539)
T ss_pred HH
Confidence 43
No 326
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.24 E-value=24 Score=29.06 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=7.4
Q ss_pred hcCChhHHHHHHHHHHh
Q 007970 225 NEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~ 241 (583)
+.++.+++..++..+.-
T Consensus 22 ~~~~~~D~e~lL~ALrv 38 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV 38 (160)
T ss_pred ccCChHHHHHHHHHHHH
Confidence 33444444444444443
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.38 E-value=31 Score=29.69 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=44.2
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCH
Q 007970 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK--IEPDVVSYNILIDGFILIDDS 338 (583)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 338 (583)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++...+.... -.+|+..+..|+..+.+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344455 556666666666554445555555555444 5566666666665544222 135556666666666666666
Q ss_pred HHH
Q 007970 339 AGA 341 (583)
Q Consensus 339 ~~a 341 (583)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 555
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.72 E-value=70 Score=33.23 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHH
Q 007970 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA-----LVKAGSMDRARQVLAEMTR-------IGVPANRITYNILLKGY 296 (583)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~ 296 (583)
...|.++++.....+ +......+... +....+.+.|+.+++.+.+ .| .......+..+|
T Consensus 228 ~~~a~~~~~~~a~~g------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhc------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 467888888887763 22222222222 3456789999999999877 55 333556677777
Q ss_pred HhcC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 007970 297 CQQL-----QIDKAKELLREMADDAKIEPDVVSYNILIDGFIL-IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-- 368 (583)
Q Consensus 297 ~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-- 368 (583)
.+.. +.+.|..++..... .+ .|+.......+.-... ..+...|.++|......|.. ..+-.+..+|.
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G 373 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELG 373 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhC
Confidence 7643 56778888887754 33 3444433333222222 24567888888888888743 22222222221
Q ss_pred --hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007970 369 --LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424 (583)
Q Consensus 369 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 424 (583)
-..+...|..++++.-+. + .|....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 223677788888887763 3 2332222233333344 677777777766666554
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.23 E-value=20 Score=26.55 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 386 (583)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|..+|+.+..+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33455566666666677777778888888888888888888887777643
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.16 E-value=3.9 Score=22.73 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
-.+..++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556677778888888888888776
No 331
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.10 E-value=34 Score=33.39 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHhHHHHHHHHHHHH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVA--TYGSLANGIS--LARKPGEALLLWKEIKER 457 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 457 (583)
..+.+.+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788899999999988876 555554 4455555553 356788888888887654
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.24 E-value=3.5 Score=25.35 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999998644
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.16 E-value=31 Score=34.98 Aligned_cols=132 Identities=17% Similarity=0.040 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
..+.+++.+.+.|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 4455666666777777666542 12111 1122346677777777665532 456688888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
...+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|. .|....+|...|+++++
T Consensus 677 l~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 888888888888877643 45666777777776666666666665552 23333456678888888
Q ss_pred HHHHHHH
Q 007970 448 LLLWKEI 454 (583)
Q Consensus 448 ~~~~~~~ 454 (583)
++++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 8776654
No 334
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.98 E-value=58 Score=33.95 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCH
Q 007970 491 RAAFFRKALEIVACMEEHGIPPNK 514 (583)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~ 514 (583)
+.|++.+|.+.+=.+...++.|..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHH
Confidence 447777777777777665665543
No 335
>PRK09687 putative lyase; Provisional
Probab=79.86 E-value=51 Score=30.54 Aligned_cols=235 Identities=11% Similarity=0.049 Sum_probs=153.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhCCCCCC
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM----DRARQVLAEMTRIGVPAN 285 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~ 285 (583)
.++..+....+.++...|. +++...+..+.. .+|...-...+.++...|+. +++...+..+... .++
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 5777788888888888775 344444444443 34566666777778888863 4677777766443 456
Q ss_pred HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 286 RITYNILLKGYCQQLQ-----IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 360 (583)
..+-...+.++...+. ...+...+..... .++..+-...+.++.+.++ ..++..+-.+... ++...-
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR 176 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVR 176 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHH
Confidence 6666666666665542 1234444444433 3466677777788888776 5677777776653 455555
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 361 TTLMKAFALSS-QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439 (583)
Q Consensus 361 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 439 (583)
...+.++.+.+ ....+...+..+..+ ++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++.
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 66666666553 244677777777653 577777888889999988 56777766666543 2 2446777888
Q ss_pred hcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHH
Q 007970 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV 490 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 490 (583)
..|.. +|+..+..+.+. .||..+-...+.+|.
T Consensus 247 ~ig~~-~a~p~L~~l~~~------------------~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK------------------FDDNEIITKAIDKLK 278 (280)
T ss_pred hcCCH-hHHHHHHHHHhh------------------CCChhHHHHHHHHHh
Confidence 88886 688888888875 667777666666654
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.55 E-value=5.8 Score=22.30 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3577788999999999999999999875
No 337
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.26 E-value=52 Score=30.22 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
.++..+...++..++..+++.+-.++++......+...|...|..+|......|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 34444455555555555555555555554443323334444555555555555554433
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.15 E-value=5.9 Score=21.96 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+-.+..++.+.|++++|.+.|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44577888999999999999999975
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.87 E-value=7.1 Score=21.93 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555443
No 340
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.75 E-value=2.4 Score=34.54 Aligned_cols=85 Identities=14% Similarity=0.329 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHH
Q 007970 15 TVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94 (583)
Q Consensus 15 ~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 94 (583)
.+|+.+.+.+. ....+..++.+... +...+...++.++..|++.++.++..++++... ..
T Consensus 12 ~vi~~~~~~~~--~~~l~~yLe~~~~~-----------~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~y 71 (143)
T PF00637_consen 12 EVISAFEERNQ--PEELIEYLEALVKE-----------NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NY 71 (143)
T ss_dssp CCHHHCTTTT---GGGCTCCHHHHHHT-----------STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS
T ss_pred HHHHHHHhCCC--HHHHHHHHHHHHhc-----------ccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------cc
Confidence 45677777776 88899999998862 234578899999999999998899888888221 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERI 119 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~ 119 (583)
-...++..|.+.|.++.+.-++.++
T Consensus 72 d~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 72 DLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp -CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred CHHHHHHHHHhcchHHHHHHHHHHc
Confidence 2344566666677776666666554
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.48 E-value=76 Score=31.69 Aligned_cols=165 Identities=12% Similarity=0.057 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007970 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362 (583)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 362 (583)
+.|.....+++..+..+-++.-.+.+-.+++.. ..+-..|..++.+|... ..+.-..+|+++.+..+. |...-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 455666667777777777777777777777653 34556677777777766 566677777777765322 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVD------IVAWNMLVEGYCRMGLVEEAKRIIERMKE-NGFYPNVATYGSLA 435 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~ 435 (583)
|...|. .++...+..+|.++... +-|. ...|.-++.. -..+.+..+.+...+.. .|..--...+..+.
T Consensus 138 La~~yE-kik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 138 LADKYE-KIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHH-HhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 443343 36666677777666542 2221 1234333321 13455666666666543 23333344455555
Q ss_pred HHHHhcCCHhHHHHHHHHHHHH
Q 007970 436 NGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.-|....++.+|++++..+.+.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhh
Confidence 6666777777777777766654
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.42 E-value=54 Score=30.02 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
+++.....|..+|.+.+|.++-++.+... +.+...+-.++..++..|+--.|.+.++++.+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 44556678999999999999999998763 4577788889999999999999999888887653
No 343
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.35 E-value=22 Score=28.75 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcC
Q 007970 92 DVLTYNVMIKLCARASR-KHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141 (583)
Q Consensus 92 ~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (583)
+...|+.++.+...... ---+..+|.-|.+.+.++++.-|..++.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44556666666644444 233445566666655666666666666665543
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.29 E-value=51 Score=29.67 Aligned_cols=164 Identities=10% Similarity=0.113 Sum_probs=89.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC----CCCCCHHHHHH
Q 007970 328 LIDGFILIDDSAGALTFFNEMRAR-----GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP----RVKVDIVAWNM 398 (583)
Q Consensus 328 li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ 398 (583)
++..+.+.+++++.+..|.++... .-.-+..+.++++...+...+.+....+|+.-.... +...-..+-+-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 344444555555555555444221 012234556666666665556555555554432210 11111223345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccC
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKENGFYP-----------NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 467 (583)
|...|...+.+.+..++++++...--.. =...|..-+..|....+-.+...+|++......
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS-------- 222 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS-------- 222 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc--------
Confidence 6777778888888888888876431111 134566667778888888888888888776532
Q ss_pred CCCCCCCCCCCHHHHHHHHHH-----HHhhhhHHHHHH-HHHHHHH
Q 007970 468 DSDLPPPLKPDEELLDALADI-----CVRAAFFRKALE-IVACMEE 507 (583)
Q Consensus 468 ~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~-~~~~~~~ 507 (583)
.-|.+.+. .+++- ..+.|.|++|-. .|+.+..
T Consensus 223 -------AIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 223 -------AIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred -------cCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 23444333 33443 357788888754 4455543
No 345
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=78.22 E-value=48 Score=29.29 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
+...-+..|.+.-++.-|....+++.+ | ..+-.+++ -|.+..+.+--.++.+-....+++-+..-..+++
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE-------P-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii- 201 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE-------P-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII- 201 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh-------h-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh-
Confidence 455566777777777777666666543 2 12222222 3455555555555555555566666666565554
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007970 295 GYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~ 314 (583)
+...|+...|+.-++.-..
T Consensus 202 -fta~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 202 -FTAQGDMRQALNNLQSTVN 220 (333)
T ss_pred -hhccchHHHHHHHHHHHhc
Confidence 5667888888877776653
No 346
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.08 E-value=77 Score=31.55 Aligned_cols=68 Identities=9% Similarity=-0.034 Sum_probs=37.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHh
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI-KLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
.+.|+..|..-+..+-+.+.+.+.-.+|..|....+ -++..|-... .-+-.+-+++.|..+|..-++.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 444666777777666666667777777777765432 1222232222 2222333466666666665554
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.05 E-value=4.1 Score=21.51 Aligned_cols=23 Identities=17% Similarity=-0.042 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Q 007970 481 LLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
....+..++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567889999999999999886
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.61 E-value=35 Score=31.00 Aligned_cols=97 Identities=13% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCH
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 514 (583)
|.+++..+++.+++.+.-+.-+.-+ .++| .+...-|-.|.+.|....+.++-..-....-+-+.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pE--------------klPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~l 153 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPE--------------KLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSL 153 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcc--------------cCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCc
Confidence 5678888999988877665544311 2333 45555566789999999999998887764444445
Q ss_pred HHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007970 515 TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPN 560 (583)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 560 (583)
..|..+ ++++-. .+..+-|.++||.+++.+-..
T Consensus 154 p~y~~v-aELyLl------------~VLlPLG~~~eAeelv~gs~a 186 (309)
T PF07163_consen 154 PEYGTV-AELYLL------------HVLLPLGHFSEAEELVVGSAA 186 (309)
T ss_pred hhhHHH-HHHHHH------------HHHhccccHHHHHHHHhcCCC
Confidence 557776 666554 244455889999988865543
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.31 E-value=45 Score=30.33 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=59.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
.=|.+++..+++.+++.+.-+.-+.. ..++ .......|-.|.+.+.+..+.++-+.-....-.-...-|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~p-EklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVP-EKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCc-ccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 34678888999999988776665531 1233 34455666678888988888888777665422223334666666555
Q ss_pred h-----cCCHHHHHHHH
Q 007970 298 Q-----QLQIDKAKELL 309 (583)
Q Consensus 298 ~-----~~~~~~A~~~~ 309 (583)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 68888888776
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.50 E-value=26 Score=30.46 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=18.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKE 307 (583)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 307 (583)
+.+.+.+.+++...++-++.. |.+..+-..+++.+|-.|++++|..
T Consensus 11 LL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHH
Confidence 333444444444444333332 2233333334444444444444443
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.49 E-value=7.6 Score=23.88 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=14.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
No 352
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.47 E-value=89 Score=30.99 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=21.7
Q ss_pred cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
++.++..++.+..+...|.......++.-...|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 355566666666666555544455555555555555544
No 353
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.28 E-value=14 Score=23.92 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
+-.+.-++.+.|++++|.+..+.+.+ +.|+..-...+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 44567789999999999999999986 67887766555
No 354
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.26 E-value=35 Score=27.67 Aligned_cols=30 Identities=7% Similarity=0.096 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHcCCC-hHHHHHHHHHHHh
Q 007970 127 CMTTFQSLVAAYVGFGD-LEIAETIVQAMRE 156 (583)
Q Consensus 127 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 156 (583)
+...|..++...+.... ---+..+|.-+.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 44455555555544444 2334455555544
No 355
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.86 E-value=14 Score=24.82 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 476 KPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 476 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..|..-...++.+|...|++++|.++++.+.+
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666667789999999999999999999853
No 356
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=73.42 E-value=62 Score=28.25 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 330 (583)
+..||.+.--+...|+++.|.+.|+...+....-+-...|.=| ++.-.|++.-|.+-|.+.-+.....|=...|.-++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5567777777777888888888888887765222222222222 233367777777766665443322232233333332
Q ss_pred HHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-------HHHHHHHHHH
Q 007970 331 GFILIDDSAGALTFFN-EMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-------IVAWNMLVEG 402 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~li~~ 402 (583)
..-++.+|..-+. +.... |..-|...|-.+. .|+.. ...+++.+... ...+ ..+|--+..-
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~--a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKAD--ATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHH
Confidence 2334445543332 22222 3333333332221 11111 12233333331 1111 3455566666
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 007970 403 YCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~ 422 (583)
+...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 67777777777777766543
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.15 E-value=25 Score=30.57 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=22.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (583)
+.+.+.+...+++.....-.+ ..+.+.-+-..+++.+|-.|+|++|..-++-
T Consensus 9 seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 333444444444444444333 1223333334444445555555555444443
No 358
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.46 E-value=25 Score=32.79 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=58.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
..-|.+.|.+++|++.|...... .+-+.+++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 45788999999999999887764 33388888888889999888887777666665432 11122233333333334
Q ss_pred CCHHHHHHHHHHHHh
Q 007970 300 LQIDKAKELLREMAD 314 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~ 314 (583)
|...+|.+-++..+.
T Consensus 179 g~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLA 193 (536)
T ss_pred hhHHHHHHhHHHHHh
Confidence 556666665555543
No 359
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.27 E-value=52 Score=26.80 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=9.1
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~ 421 (583)
+...|+|++|+++|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444455555555554443
No 360
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.20 E-value=95 Score=29.80 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 279 (583)
....+|..++..+.+.|+++.|...+..+...........+.....-+...-..|+.++|+..++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888888888888888877642111111233344445566677888888888777766
No 361
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=71.71 E-value=98 Score=29.75 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKEN--GFYPN---VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~--g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
.|...+-..|+.++|..++.+..-. |---- +.....-++.|...+++-.|--+-+++...+-.
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~------------ 203 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFE------------ 203 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcC------------
Confidence 3445555667777777666654311 10000 011111244566778888888777777665311
Q ss_pred CCCCCCH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHH--
Q 007970 473 PPLKPDE-----ELLDALADICVRAAFFRKALEIVACMEEH-GIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRE-- 544 (583)
Q Consensus 473 ~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 544 (583)
.|+. ..|..++....+.+.+-++.+.++..-+. .+..|+.-|...+...-.-+..++..........+.
T Consensus 204 ---~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~ 280 (439)
T KOG1498|consen 204 ---KPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISN 280 (439)
T ss_pred ---CccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhc
Confidence 4443 46777888888888999999999988653 344555556555333322222233332222222222
Q ss_pred ------HHHHHHHHHHHhcCCCCCCCcccccCC
Q 007970 545 ------RKRAAEAFKFWLGLPNSYYGSEWRLDP 571 (583)
Q Consensus 545 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 571 (583)
...+++-..++..+.-..+.+.|..|+
T Consensus 281 dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg 313 (439)
T KOG1498|consen 281 DKKLSELPDYKELLKLFVTMELIRWVSLVESYG 313 (439)
T ss_pred ccccccCccHHHHHHHHHhcceeeehhHhhhhH
Confidence 234677777777776666667777765
No 362
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.53 E-value=1.2e+02 Score=30.50 Aligned_cols=180 Identities=11% Similarity=0.131 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
+.|.....+++..+....++.-...+..+|... ..+...|..++.+|... ..++-..+++.+.+..+. ++..-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-----~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ 135 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-----GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIG 135 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHH
Confidence 356667788899999998888888999999875 45677889999999888 557888899988887542 34444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPD------VVSYNILIDGFILIDDSAGALTFFNEMRAR-GIAPTKISYTT 362 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ 362 (583)
..|+..|-+ ++.+.+..+|.++... +.|. ...|.-+... -..+.+..+.+..++... |..--...+.-
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 445555544 8888888888877542 1221 1244444431 135666666666666543 33334455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 403 (583)
+-.-|....++++|++++..+.+ ....|..+-..++.-+
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~l 249 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILE--HDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhh--hcchhhhHHHHHHHHH
Confidence 66778888899999999988876 3344555555555443
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.46 E-value=34 Score=26.75 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..+-++.+....+.|++.....-+++|.+.+++..|+++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566667777778888888888888998899999999988888766
No 364
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.82 E-value=56 Score=26.61 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=9.0
Q ss_pred hcCChhHHHHHHHHHHh
Q 007970 225 NEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~ 241 (583)
..++.+++..+++.+.-
T Consensus 22 ~~~d~~D~e~lLdALrv 38 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV 38 (153)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 34555555555555544
No 365
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.81 E-value=1.5e+02 Score=31.47 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
...|+..|...++++.|..++-.+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhc
Confidence 334788888888888888887666
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.44 E-value=14 Score=26.09 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHH
Q 007970 430 TYGSLANGISLARKPGEALLL 450 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~ 450 (583)
++..++.+|+..|++.+++.+
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555444443
No 367
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.74 E-value=1.8e+02 Score=31.90 Aligned_cols=102 Identities=15% Similarity=0.003 Sum_probs=53.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHhHHHHH--HHHHHHHhhhhhccccCCCCC
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA--------RKPGEALLL--WKEIKERCEVKKEGVNADSDL 471 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------g~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 471 (583)
.|......+-++.+++.+....-.++....+.++..|... ++.+++.+. -++.... ............+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~-l~~s~~Y~p~~~L 678 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF-LESSDLYDPQLLL 678 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH-hhhhcccCcchhh
Confidence 4666777888889999887665556677777777666431 222233333 1111111 0000000000000
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 472 PPPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 472 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+++ ...|......+.|.|+.++|+.++-...
T Consensus 679 -~~~~~-~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 679 -ERLNG-DELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred -hhccc-hhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 01122 3445555556669999999999887765
No 368
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.94 E-value=2e+02 Score=32.21 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV----AT 430 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~ 430 (583)
-|..+++.+-..+-.+.+.++-..+++. .+++ ..+++.+..-....|.+-+|...+-. .||. ..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdc 1056 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHH
Confidence 3677888888888889988888777763 3332 34667777777788888777665533 2443 34
Q ss_pred HHHHHHHHHhcCCHhH------------HHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHH
Q 007970 431 YGSLANGISLARKPGE------------ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 498 (583)
...++..++..|..+. ....+.+...+. .+-.+| ..|..|.-.+...+++.+|
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs-------------~~~mk~--nyYelLYAfh~~RhN~Rka 1121 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARS-------------SPSMKK--NYYELLYAFHVARHNFRKA 1121 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhc-------------Cccccc--cHHHHHHHHHHhhcchhHH
Confidence 5566666666666543 333111111110 001122 3455555566778888887
Q ss_pred HHHHHHH
Q 007970 499 LEIVACM 505 (583)
Q Consensus 499 ~~~~~~~ 505 (583)
--++-+.
T Consensus 1122 atvMYEy 1128 (1480)
T KOG4521|consen 1122 ATVMYEY 1128 (1480)
T ss_pred HHHHHHH
Confidence 7766554
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.41 E-value=39 Score=29.76 Aligned_cols=100 Identities=24% Similarity=0.170 Sum_probs=59.3
Q ss_pred HHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH--HHHHHHHHHHHhhhh-------HHHHHHHHHHHHHc
Q 007970 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE--ELLDALADICVRAAF-------FRKALEIVACMEEH 508 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~ 508 (583)
+.....+++|++.|.-+.-..... +-+|.. .++.-+++.|...|+ +..|++.|++..+.
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~------------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIK------------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777666655442211 124442 455566778877777 44566666665443
Q ss_pred CCCC----CHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 007970 509 GIPP----NKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSE 566 (583)
Q Consensus 509 ~~~p----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 566 (583)
.-.| +..+..-++.++..|. |+.++|.+++.++-.++..+.
T Consensus 155 e~~~~~~~~~~~l~YLigeL~rrl-----------------g~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 155 EDFPIEGMDEATLLYLIGELNRRL-----------------GNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred CcCCCCCchHHHHHHHHHHHHHHh-----------------CCHHHHHHHHHHHHcCCCCCC
Confidence 2222 2234444456666666 999999999999977776544
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.01 E-value=1.9e+02 Score=31.27 Aligned_cols=199 Identities=16% Similarity=0.101 Sum_probs=104.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 007970 296 YCQQLQIDKAKELLREMADDAKIEPDV-------VSYNILID-GFILIDDSAGALTFFNEMRAR----GIAPTKISYTTL 363 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l 363 (583)
.....++.+|..++.++....+ .|+. ..|+.+-. .....|++++|.++-+..... -..+....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3457789999999888754322 2221 12333322 234578899999888877653 112334455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCH---HHHHHHH--HHHHHcCC--HHHHHHHHHHHHHC--CCCC----CHHH
Q 007970 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDI---VAWNMLV--EGYCRMGL--VEEAKRIIERMKEN--GFYP----NVAT 430 (583)
Q Consensus 364 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li--~~~~~~g~--~~~A~~~~~~~~~~--g~~p----~~~~ 430 (583)
..+..-.|++++|..+.....+. .-.-+. ..|..+. ..+...|+ +.+.+..+...... +-+| -..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 66777789999998887766542 111222 2233332 23445563 23333333333221 0111 1234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH--H--HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE--E--LLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
+..++.++.+ ++.+..-.....+... ...|.. . .+..|+.+....|+.++|...++++.
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~--------------~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGS--------------VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhh--------------hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444555443 3333222222222110 112322 2 22366788889999999999999997
Q ss_pred HcCCCCC
Q 007970 507 EHGIPPN 513 (583)
Q Consensus 507 ~~~~~p~ 513 (583)
.....++
T Consensus 646 ~l~~~~~ 652 (894)
T COG2909 646 RLLLNGQ 652 (894)
T ss_pred HHhcCCC
Confidence 6444443
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.87 E-value=44 Score=26.18 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 77 FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 77 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
..+-++.+....+.|++......+++|.+-+++..|.++|+-++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555566677777777777777777777777777666543
No 372
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.74 E-value=91 Score=27.49 Aligned_cols=103 Identities=15% Similarity=0.000 Sum_probs=55.1
Q ss_pred HcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCC-CC
Q 007970 405 RMGLVEEAKRIIERMKE----NGFYPN--VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL-KP 477 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~----~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p 477 (583)
....+++|++.+.-+.- .+-+|. ...+..+...|...|+.+.-..+++.+.+.....-... ..++ ..
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e------~~~~~~~ 162 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE------DFPIEGM 162 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC------cCCCCCc
Confidence 34455666665554431 222333 23455556667777776554444444444322110000 0011 11
Q ss_pred C-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 478 D-EELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 478 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
+ ..+...+.....+.|++++|.+.|..+...+-.+.
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 2 24444566788999999999999999986443333
No 373
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.97 E-value=98 Score=27.58 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=76.5
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDI-VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG-SLANGISLARKP 444 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~ 444 (583)
|....+++.|...|.+.+. +.|+. .-|+.=+.++.+..+++.+..=-.+.++ +.||..--. .+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 5556678888888877765 34555 4556667778888888888877777776 456655433 344456777888
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
++|+..+.++...... ..+.|...+...|..+=-..=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~------------~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLRE------------QPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhc------------CCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8999888888554211 023444456666655543333444555555544
No 374
>PRK10941 hypothetical protein; Provisional
Probab=64.02 E-value=1.2e+02 Score=27.89 Aligned_cols=62 Identities=15% Similarity=-0.057 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.+.+-.+|.+.++++.|+++.+.+... .+.++.-+.--.-.|.+.|.+..|..-++..++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l-~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF-DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345566788889999999999988875 23345556666667888899999988888888774
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.73 E-value=21 Score=18.73 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 481 LLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+..+..++...|++++|...++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466778889999999999999998864
No 376
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.46 E-value=1.4e+02 Score=28.04 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLD-ALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
.+.....-|++.|+.+.|++.+++..++.. .-|.+.|...+. .+.-.|....-..+-++..+.+.+.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktv------------s~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~ 173 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTV------------SLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE 173 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHh------------hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 444455567777777777777776655421 114455543332 2233444444455555555555555
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q 007970 509 GIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWR 568 (583)
Q Consensus 509 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 568 (583)
|-..+..+--..+-.+++-+ ...+.+|-.++...-.+..+.+..
T Consensus 174 GgDWeRrNRlKvY~Gly~ms----------------vR~Fk~Aa~Lfld~vsTFtS~El~ 217 (393)
T KOG0687|consen 174 GGDWERRNRLKVYQGLYCMS----------------VRNFKEAADLFLDSVSTFTSYELM 217 (393)
T ss_pred CCChhhhhhHHHHHHHHHHH----------------HHhHHHHHHHHHHHcccccceecc
Confidence 65555544333322222221 245666666665554444444333
No 377
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.53 E-value=83 Score=25.19 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHHHH
Q 007970 425 YPNVATYGSLANGISLAR---KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRKAL 499 (583)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~ 499 (583)
.++..+--.+..++.+.. +..+.+.+++.+.+.. .|+ ......|.-++.+.+++++++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-----------------~~~~rRe~lyYLAvg~yRlkeY~~s~ 91 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-----------------HPERRRECLYYLAVGHYRLKEYSKSL 91 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-----------------CcccchhhhhhhHHHHHHHhhHHHHH
Confidence 456666666777776655 4556777888877521 333 245556777888999999999
Q ss_pred HHHHHHHHcCCCCCHHHH
Q 007970 500 EIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 500 ~~~~~~~~~~~~p~~~~~ 517 (583)
++.+.+.+ ..||..-.
T Consensus 92 ~yvd~ll~--~e~~n~Qa 107 (149)
T KOG3364|consen 92 RYVDALLE--TEPNNRQA 107 (149)
T ss_pred HHHHHHHh--hCCCcHHH
Confidence 99999875 45555433
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.53 E-value=56 Score=24.15 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=25.4
Q ss_pred HhcCChhHHHHHHHHHHhcccCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 224 MNEGRVSDTVRMLGAMRRQEDNASHPD-----HVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
.+.|++.+|.+.+.+..+.......+. ......+.......|++++|...+++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456777777655555443311112211 1112223333445566666666655554
No 379
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.22 E-value=1.5e+02 Score=27.31 Aligned_cols=28 Identities=4% Similarity=-0.047 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
..+..+..-|++.++.+.+.++..+..+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3444445555555555555555544433
No 380
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.75 E-value=12 Score=34.81 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHH
Q 007970 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDA 484 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~ 484 (583)
.|.++.|++.|...++.. +|....|..-..++.+.+++..|+.-+...... .||. .-|-.
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------------------n~Dsa~~ykf 187 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI------------------NPDSAKGYKF 187 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc------------------Ccccccccch
Confidence 445556666655555542 333444444455555566666665555554432 4443 22222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 485 LADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
--.+-.-.|+|++|.+.+....+.++.+...-|
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhccccHHHHHH
Confidence 223333456666666666666555555544433
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.47 E-value=2.5e+02 Score=29.82 Aligned_cols=170 Identities=7% Similarity=-0.107 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 346 (583)
.+++...+....... .+......-+......++++.+...+..|..... ....-.--+..++...|+.++|..+|+
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~--~~~rw~YW~aRa~~~~g~~~~A~~~~~ 370 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK--EKDEWRYWQADLLLEQGRKAEAEEILR 370 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc--cCHhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433221 2334444445555566677766666666643221 222233334445555677777777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007970 347 EMRARGIAPTKISYTTLMKAFALSSQPKL-ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425 (583)
Q Consensus 347 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 425 (583)
.+... . +|-.++.+ .+.|..-. .......... .+..+ .-..-+..+...|....|...+..+...
T Consensus 371 ~~a~~---~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~--~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~--- 436 (644)
T PRK11619 371 QLMQQ---R---GFYPMVAA-QRLGEEYPLKIDKAPKPDS--ALTQG--PEMARVRELMYWNMDNTARSEWANLVAS--- 436 (644)
T ss_pred HHhcC---C---CcHHHHHH-HHcCCCCCCCCCCCCchhh--hhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 65321 1 12222211 11121100 0000000000 00000 0112244566778888888888887764
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 426 PNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
.+......+.......|.++.++......
T Consensus 437 ~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 437 RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 34455555666666778877777665543
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=58.02 E-value=2.4e+02 Score=29.46 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHH
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDV 37 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~ 37 (583)
+...|+ .+..+.-.|. ++.|..++..
T Consensus 148 ~p~FW~-~v~~lvlrG~--~~~a~~lL~~ 173 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGL--FDQARQLLRL 173 (566)
T ss_dssp SHHHHH-HHHHHHHTT---HHHHHHHH-T
T ss_pred chhHHH-HHHHHHHcCC--HHHHHHHHHh
Confidence 467888 5677777888 8898888743
No 383
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.74 E-value=1.2e+02 Score=26.03 Aligned_cols=112 Identities=11% Similarity=0.020 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHcCCHHHH
Q 007970 340 GALTFFNEMRARGIAPTKISYT--TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW-----NMLVEGYCRMGLVEEA 412 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A 412 (583)
+.....+.+....-.....++. .+...+...+++++|..-++..... |....+ -.|.+.....|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444555555542222222222 3344577788999999888877642 222222 3345667788899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..++.....++ .......-...+...|+.++|..-|++....
T Consensus 146 L~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 146 LKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 998888765533 2233344456688889999999999988875
No 384
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.60 E-value=1.9e+02 Score=28.07 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhh-----cCC---------ccccccCCcCHHHHHHH---HHHHHhcC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRK-----FSD---------PDIVSDSKPDTAAYNAV---LNACANLG 72 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~l---i~~~~~~g 72 (583)
+.++-.+-..+...|+ .+.|..++++.+-.+.+ |+. ..+.....-|...|-++ |..+.+.|
T Consensus 40 idtLlqls~v~~~~gd--~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG 117 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGD--HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRG 117 (360)
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcC
Confidence 4566777788888988 88888888877654442 211 11222333466666655 56678999
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHhC------CCcchhHHHHHHHHHHcCCCh-
Q 007970 73 KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA-RASRKHLLVFVLERILEMG------ITLCMTTFQSLVAAYVGFGDL- 144 (583)
Q Consensus 73 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~- 144 (583)
.+..|+++.+-+......-|+......|..|+ +.++++-.+++.+...... .-| ...|+..+ ++...++.
T Consensus 118 ~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP-n~a~S~aL-A~~~l~~~~ 195 (360)
T PF04910_consen 118 CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP-NFAFSIAL-AYFRLEKEE 195 (360)
T ss_pred cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc-cHHHHHHH-HHHHhcCcc
Confidence 99999999999999876557776677777665 6788888888888766521 122 23444433 33344554
Q ss_pred --------------HHHHHHHHHHHhhhHHHH
Q 007970 145 --------------EIAETIVQAMREGRRDVC 162 (583)
Q Consensus 145 --------------~~A~~~~~~~~~~~~~~~ 162 (583)
+.|...+.......|.+.
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 788888877766555443
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.10 E-value=46 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
.|++.+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 386
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=55.91 E-value=1.8e+02 Score=27.44 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG-VPANRITYN 290 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 290 (583)
++.....+.....+.|..++-..+++.... .++......++.+.+...+.+...++++.+...+ +++.. ..
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~------~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~~- 239 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKN------STSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD-IR- 239 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHT------TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT-HH-
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhc------cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH-HH-
Confidence 334444555566666665555555555443 2456667778888888888888888888888754 44333 33
Q ss_pred HHHHHHHhcCC--HHHHHHHHH
Q 007970 291 ILLKGYCQQLQ--IDKAKELLR 310 (583)
Q Consensus 291 ~l~~~~~~~~~--~~~A~~~~~ 310 (583)
.++..+...+. .+.+.+.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 240 YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHH
Confidence 33334442333 255555543
No 387
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=55.91 E-value=3.1e+02 Score=30.07 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 336 (583)
.++..-...+...|++..|.+++.++.++.+-.++...|..++..+...|
T Consensus 1232 K~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1232 KVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 33333333444455555555555555554444444444444444444433
No 388
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.47 E-value=84 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
|..++..|...|.+++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777777665
No 389
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.35 E-value=2.1e+02 Score=27.87 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFG--AKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 121 (583)
..+.-+...|...|+++.|++.|-.....- .+-.+..|-.+|..-...|++........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456666777777777777777777654431 111233344445555555666655555544443
No 390
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.14 E-value=65 Score=32.70 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=63.8
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHH
Q 007970 69 ANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148 (583)
Q Consensus 69 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (583)
-..|+...|...+.........-..+....|.+.+.+.|-...|..++.+..... ...+-++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4567888888887776654433344555667777777787888888887777665 456667778888888888888888
Q ss_pred HHHHHHHhh
Q 007970 149 TIVQAMREG 157 (583)
Q Consensus 149 ~~~~~~~~~ 157 (583)
+.|+.....
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 888877653
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.99 E-value=37 Score=22.80 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555443
No 392
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.87 E-value=89 Score=23.46 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007970 338 SAGALTFFNEMRARGIAPTKISYTTLM--KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415 (583)
Q Consensus 338 ~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (583)
.++|..+-+.+...+ +..-...+| ..+...|++++|..+.+.+ ..||...|.+|. -.+.|-.+++..-
T Consensus 21 HqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALc--e~rlGl~s~l~~r 90 (115)
T TIGR02508 21 HQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALC--EWRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHH--HHhhccHHHHHHH
Confidence 455555555555432 112222233 3456677777777765544 247777766653 3466666767676
Q ss_pred HHHHHHCCCCCCHHHH
Q 007970 416 IERMKENGFYPNVATY 431 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~ 431 (583)
+.+|..+| .|....|
T Consensus 91 l~rla~sg-~p~lq~F 105 (115)
T TIGR02508 91 LNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76776665 3444433
No 393
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.29 E-value=57 Score=21.07 Aligned_cols=25 Identities=20% Similarity=-0.027 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+.-++.+.|++++|.+..+.+.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4556788999999999999999987
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.97 E-value=1.8e+02 Score=26.72 Aligned_cols=132 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc----ccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH----HHhCCCCCCHHHHH
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQ----EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE----MTRIGVPANRITYN 290 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~ 290 (583)
+.+-..+.+++++|+..+.++... .+........+...+...|...|+....-+.... |....-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQ-----IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 291 ~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
+|+..+....+ +.-+..+.+...++...-.....-.-++..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.94 E-value=84 Score=28.50 Aligned_cols=63 Identities=16% Similarity=-0.004 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
..+..-|...|++++|.++|+.+...+..+ | ...+...+...+..++.+.|+.++.+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--g---------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRRE--G---------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--C---------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566778888888888888875543211 1 12344566667777777888877776655444
No 396
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.88 E-value=53 Score=20.61 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=26.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
....+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344567777788888888888888777777776654
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.61 E-value=75 Score=27.41 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 319 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
.|+...|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.09 E-value=85 Score=32.41 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhH------HHHHHHHHHHhCCCcchhHHHHH
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEF--GAKPDVLTYNVMIKLCARASRKHL------LVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
+|..+|...|++..+.++++.+... |-+.-...||..|+...++|.++- |.+.+++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7999999999999999999999875 333345678888999999998653 344444443 34467777777
Q ss_pred HHHHHc
Q 007970 135 VAAYVG 140 (583)
Q Consensus 135 ~~~~~~ 140 (583)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665544
No 399
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.93 E-value=49 Score=33.47 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
.|.....+.|...+|..++.+.... ....+.++..+.+++....+++.|++.|++..+.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~----~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAI----NSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhh----cccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 3444444445555555555554443 1222344445555555555555555555555544
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.73 E-value=1.1e+02 Score=31.63 Aligned_cols=77 Identities=13% Similarity=0.298 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChH------HHHHHHHHHHhCCCCCCHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD------RARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+|..+|...|++..+.++++.+.... .+.+.-...++.-|+...+.|.++ .|.+++++.. +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~-~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN-KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 88889999999999999988887652 123333556777778888888754 3444444444 3446677777
Q ss_pred HHHHHHh
Q 007970 292 LLKGYCQ 298 (583)
Q Consensus 292 l~~~~~~ 298 (583)
++++-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 6665444
No 401
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.59 E-value=3.9e+02 Score=29.96 Aligned_cols=215 Identities=12% Similarity=0.115 Sum_probs=107.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCHHHHHHHH--
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-AGSMDRARQVLAEMTRIGVPANRITYNILL-- 293 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-- 293 (583)
...++-+...+++.+|..+.++-+-.-.--..-++..|..=+..+.+ .++.+-.-.++..+.+..+. ...|....
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt--~tmY~~~~~~ 775 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVT--KTMYKDTYPP 775 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccc--cccccccccc
Confidence 45567778899999988776654321000012234444444444443 35555555555555543321 11121111
Q ss_pred ----------HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 294 ----------KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRARGIAPTKISYT 361 (583)
Q Consensus 294 ----------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~ 361 (583)
......++.......+...+.. ......-...++.+|++.+ ++++|+....++.+. +...-.
T Consensus 776 ~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae 849 (928)
T PF04762_consen 776 SSEAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAE 849 (928)
T ss_pred ccccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHH
Confidence 1112233445555555444431 1234455677888888888 888999988888865 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
..++..+- .-.+.++|+..+-.+ |.. .+++-+-....++.+=+-+++++.+. +|+.. ...|.- +.
T Consensus 850 ~alkyl~f---LvDvn~Ly~~ALG~Y----Dl~--Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~r--ry~ID~--hL 914 (928)
T PF04762_consen 850 EALKYLCF---LVDVNKLYDVALGTY----DLE--LALMVAQQSQKDPKEYLPFLQELQKL--PPLYR--RYKIDD--HL 914 (928)
T ss_pred HHHhHhee---eccHHHHHHHHhhhc----CHH--HHHHHHHHhccChHHHHHHHHHHHhC--Chhhe--eeeHhh--hh
Confidence 22222221 122334444443211 111 12333334455777777777777653 33322 222322 56
Q ss_pred CCHhHHHHHHHHH
Q 007970 442 RKPGEALLLWKEI 454 (583)
Q Consensus 442 g~~~~a~~~~~~~ 454 (583)
+++++|++.+.++
T Consensus 915 kRy~kAL~~L~~~ 927 (928)
T PF04762_consen 915 KRYEKALRHLSAC 927 (928)
T ss_pred CCHHHHHHHHHhh
Confidence 8888888877653
No 402
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.00 E-value=1.9e+02 Score=25.82 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=17.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 007970 257 VVSALVKAGSMDRARQVLAEMTRIGVPA 284 (583)
Q Consensus 257 ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (583)
+....+..+++.+|+.+|+++....+..
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334455677778888888777654433
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.89 E-value=43 Score=30.90 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=33.5
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 391 VDI-VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434 (583)
Q Consensus 391 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 434 (583)
++. ..|+..|....+.|++++|+.++++..+.|+.--..+|-..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 444 44678899999999999999999999998876545555433
No 404
>PRK10941 hypothetical protein; Provisional
Probab=49.79 E-value=2.1e+02 Score=26.32 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 327 (583)
+.+-.+|.+.++++.|+.+.+.+.... |.++.-+.--.-.|.+.|.+..|..=++..++...-.|+......
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 334445566666666666666666543 333444444444566666666666655555544333344433333
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.96 E-value=1.3e+02 Score=25.55 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCC--CHHHHHHHHHH-----HHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHH
Q 007970 409 VEEAKRIIERMKENGFYP--NVATYGSLANG-----ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 481 (583)
.+.|+-+|+.+.+.--.| -......++.. |.+.|.+++|.+++++... .|+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-------------------d~~~~~ 145 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-------------------DPESQK 145 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-------------------CCCchh
Q ss_pred HHHHHHHHHhhhh
Q 007970 482 LDALADICVRAAF 494 (583)
Q Consensus 482 ~~~l~~~~~~~g~ 494 (583)
...-+....+..+
T Consensus 146 ~r~kL~~II~~Kd 158 (200)
T cd00280 146 LRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHccc
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.59 E-value=50 Score=30.50 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007970 474 PLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519 (583)
Q Consensus 474 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (583)
.+.||. .-|+..|....+.|++++|++++++.++.|+..-..+|..
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 456776 5567899999999999999999999999998766666543
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.42 E-value=67 Score=20.16 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=14.3
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 70 NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI 100 (583)
Q Consensus 70 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 100 (583)
+.|-..++..+++.|.+.|...+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444444444555554444444444444433
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.38 E-value=1.4e+02 Score=24.41 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 79 QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 79 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
++.+.+.+.|++++.. -..++..+...++.-.|.++|+.+.+.+...+..|....++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3455666677765543 3456777777877788999999999887666666666666666666644
No 409
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=47.37 E-value=4.5e+02 Score=29.40 Aligned_cols=211 Identities=11% Similarity=0.118 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCH--------HHHHHHHH
Q 007970 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI----GVPANR--------ITYNILLK 294 (583)
Q Consensus 227 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~--------~~~~~l~~ 294 (583)
|..---.++|+..... ++-.+...+.-..+..|.++-+.+....+.+. ..+.+. ..|..-+.
T Consensus 670 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (932)
T PRK13184 670 GFTPFLPELFQRAWDL------RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLE 743 (932)
T ss_pred cCchhhHHHHHHHhhc------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHH
Confidence 4444445566665542 34344555555557788888777766665532 111111 11222234
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhc
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVV--SYNILIDGFILIDDSAGALTFFNEMRARGIAPTK--ISYTTLMKAFALS 370 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~ 370 (583)
++.....++++.+.+..+ +|... .+..++.-..-.++.+....+.+.+...-.+... .....-|.+|.-.
T Consensus 744 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (932)
T PRK13184 744 ALSNKEDYEKAFKHLDNT------DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWN 817 (932)
T ss_pred HHHccccHHHHHhhhhhC------CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHh
Confidence 444455566666544333 22222 3333333334445555555555555544222211 2234456677777
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 007970 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450 (583)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (583)
.++++|-++++....+.........+-.....++-.++-+-|...|....+.-+-|. ++. ...|...|..++...+
T Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~ 893 (932)
T PRK13184 818 RDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFPR--SLD--GDIFDYLGKISDNLSW 893 (932)
T ss_pred ccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCcc--hhh--ccccchhccccccccH
Confidence 888888888866544322222233333333333455666777777766653322332 222 2234455666666555
Q ss_pred HHH
Q 007970 451 WKE 453 (583)
Q Consensus 451 ~~~ 453 (583)
|++
T Consensus 894 ~~~ 896 (932)
T PRK13184 894 WEK 896 (932)
T ss_pred HHH
Confidence 543
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.15 E-value=1.5e+02 Score=23.82 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 354 APTKISYTTLMKAFALSSQ---PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 354 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.++..+-..+..++.+..+ ..+.+.+++.+.+...-........-|.-++.+.+++++++++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555566666666666554 55677788888752111122333344555788889999999998888864
No 411
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=46.94 E-value=1.2e+02 Score=22.76 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 346 (583)
-++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+... .||...|.++-. .+.|-.+++..-+.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34555555555443311 11111122334555666776666654441 466666655533 34455555555555
Q ss_pred HHHHCC
Q 007970 347 EMRARG 352 (583)
Q Consensus 347 ~m~~~~ 352 (583)
.|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 555554
No 412
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.77 E-value=2.1e+02 Score=27.18 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=51.0
Q ss_pred HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007970 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE----ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519 (583)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (583)
.++++.++..+++. -|+. ..|.+++....+.|.+++++.+|++....|..|-...-..
T Consensus 119 ~eei~~~L~~li~~------------------IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~ 180 (353)
T PF15297_consen 119 KEEILATLSDLIKN------------------IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHV 180 (353)
T ss_pred HHHHHHHHHHHHhc------------------CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 45677777777765 5554 4688889999999999999999999999999987766555
Q ss_pred HHHHhhhh
Q 007970 520 IYVEMHSR 527 (583)
Q Consensus 520 ~~~~~l~~ 527 (583)
+ ++++..
T Consensus 181 l-~diL~~ 187 (353)
T PF15297_consen 181 L-VDILKM 187 (353)
T ss_pred H-HHHHHh
Confidence 5 777763
No 413
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=46.77 E-value=2.8e+02 Score=26.87 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAM 239 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~ 239 (583)
..|...+-..|++++|..++...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc
Confidence 34556667777777777776544
No 414
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.31 E-value=1.4e+02 Score=27.71 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 385 (583)
.++|+.+...++.|.-..|.-+.-.+++.=.+...+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34566666666666666665555555565566666666666655
No 415
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.80 E-value=2.2e+02 Score=25.28 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=10.3
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 007970 400 VEGYCRMGLVEEAKRIIERM 419 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~ 419 (583)
|......|+.++|++..+.+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34445555555555555544
No 416
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.54 E-value=2.3e+02 Score=25.45 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=69.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHcCC
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAPTKIS-YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI-VAWNMLVEGYCRMGL 408 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~ 408 (583)
.|.....++.|+..|.+.+.. .|+..+ |+.-+-++.+..+++.+..--.+..+ +.||. ...-.+..+......
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhcc
Confidence 355667888999988777764 677644 45556667778888887776666554 33443 344556677778888
Q ss_pred HHHHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 007970 409 VEEAKRIIERMKE----NGFYPNVATYGSLANG 437 (583)
Q Consensus 409 ~~~A~~~~~~~~~----~g~~p~~~~~~~l~~~ 437 (583)
+++|+..+.+..+ ..+.|-......|..+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999999998843 3345555556666555
No 417
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.51 E-value=1.2e+02 Score=22.14 Aligned_cols=66 Identities=17% Similarity=0.061 Sum_probs=38.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHH
Q 007970 77 FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148 (583)
Q Consensus 77 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (583)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| +..|...+.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 4566666666664 233333333332235577888888887776 43 346667777777776655543
No 418
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.00 E-value=7e+02 Score=30.94 Aligned_cols=324 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHH----HHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 007970 98 VMIKLCARASRKHLLVFVLER----ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173 (583)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (583)
.+..+-.+++.+.+|+..++. ..+. ......+..+...|...++++....+......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----------------- 1448 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----------------- 1448 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----------------
Q ss_pred cccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH
Q 007970 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253 (583)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (583)
......-|......|++..|...|+.+.+. .++...+
T Consensus 1449 ---------------------------------------~~sl~~qil~~e~~g~~~da~~Cye~~~q~----~p~~~~~ 1485 (2382)
T KOG0890|consen 1449 ---------------------------------------DPSLYQQILEHEASGNWADAAACYERLIQK----DPDKEKH 1485 (2382)
T ss_pred ---------------------------------------CccHHHHHHHHHhhccHHHHHHHHHHhhcC----CCccccc
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHhcCCCCC
Q 007970 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL-------------LREMADDAKIEP 320 (583)
Q Consensus 254 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~ 320 (583)
++-++......|.++.+.-..+.....--+-....++.=+.+--+.++++..... .-.+.-....+.
T Consensus 1486 ~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD 1565 (2382)
T KOG0890|consen 1486 HSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKD 1565 (2382)
T ss_pred hhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccc
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007970 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400 (583)
Q Consensus 321 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 400 (583)
-..++..+-..-...+..-.|...-....+. |..++....-..-......+++.-..+ ...-+..-|-.-+
T Consensus 1566 ~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~--------Y~~~~kLH~l~el~~~~~~l~~~s~~~-~s~~~sd~W~~Rl 1636 (2382)
T KOG0890|consen 1566 EIATLDLIENSRELVIENLSACSIEGSYVRS--------YEILMKLHLLLELENSIEELKKVSYDE-DSANNSDNWKNRL 1636 (2382)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhhccchHHHH--------HHHHHHHHHHHHHHHHHHHhhccCccc-cccccchhHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCC
Q 007970 401 EGYCRMGLVEEAKRIIERMKENG------FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (583)
.--....+..+-+--+++..-.. -.--..+|....+.....|+++.|...+-.+.+.
T Consensus 1637 ~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------------- 1699 (2382)
T KOG0890|consen 1637 ERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------------- 1699 (2382)
T ss_pred HHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-----------------
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCC
Q 007970 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511 (583)
Q Consensus 475 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 511 (583)
. -...+.-.+......|+...|+.++++.......
T Consensus 1700 -r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1700 -R-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred -c-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
No 419
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.95 E-value=2.8e+02 Score=26.36 Aligned_cols=101 Identities=7% Similarity=-0.008 Sum_probs=72.0
Q ss_pred CCcCHHHHHHHHHHHHhcCC------------cchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGK------------PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE 121 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 121 (583)
.|-|+.+|-.++..--..-. .+.-+.+++++.+.+. -+...+...|..+.+..+.+...+.++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888888876543322 4566788888888754 4666777888888888888888999999998
Q ss_pred hCCCcchhHHHHHHHHHHc---CCChHHHHHHHHHHHh
Q 007970 122 MGITLCMTTFQSLVAAYVG---FGDLEIAETIVQAMRE 156 (583)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 156 (583)
.. +-+...|...+..... .-.++....+|.....
T Consensus 94 ~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 94 KN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 74 4577888877776544 2346677777766554
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.62 E-value=1.3e+02 Score=22.24 Aligned_cols=56 Identities=20% Similarity=0.018 Sum_probs=35.5
Q ss_pred HHHcCCHHHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 403 YCRMGLVEEAKRIIERMKE----NGFYPN----VATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~----~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
..+.|++..|.+.+.+..+ .+.... ......+.......|++++|+..+++.++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3567888888666655543 222211 1223334555778899999999999988764
No 421
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.89 E-value=2.1e+02 Score=24.60 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 256 TVVSALVKAGSMDRARQVLAEMTRIGV--------------PANRITYNILLKGYCQQLQIDKAKELLR 310 (583)
Q Consensus 256 ~ll~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 310 (583)
+++-.|.+.-++.+..++++.|-+..+ .+--...|.....+.++|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455566666666666666554321 2223445555666666666666666665
No 422
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.07 E-value=4.8e+02 Score=28.49 Aligned_cols=192 Identities=13% Similarity=0.086 Sum_probs=91.0
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHH-------HHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHH
Q 007970 263 KAGSMDRARQVLAEMTRIGVPANRI-------TYNIL-LKGYCQQLQIDKAKELLREMADDA---KIEPDVVSYNILIDG 331 (583)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~li~~ 331 (583)
...++++|..++.++...-..|+.. .++.| .......|++++|.++.+.....- ...+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 3466777777777665432222111 12222 112234677777777776665421 122344556666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHH--HHHhcCC--HHHHHHHHHHHhcCCC--CC---CCHHHHHHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISY---TTLMK--AFALSSQ--PKLANKVFDEMLRDPR--VK---VDIVAWNML 399 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~--~~~~~~~--~~~a~~~~~~~~~~~~--~~---~~~~~~~~l 399 (583)
..-.|++++|..+.++..+....-+...+ ..+.. .+...|+ ..+....|........ .+ +-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 77778888888777665543222222222 22222 2444553 2222333333322111 11 112334444
Q ss_pred HHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 400 VEGYCRMGLVEEAKRIIERM----KENGFYPNVATY--GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~----~~~g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..++.+ ++.+..-...- ......|-...+ ..|+......|+.++|...+.++...
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444444 33332222221 111112222222 25566677788888888888877765
No 423
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.50 E-value=98 Score=28.06 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=9.6
Q ss_pred HHHHHcCCChHHHHHHHHH
Q 007970 135 VAAYVGFGDLEIAETIVQA 153 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~ 153 (583)
+++|...|+..+|.+-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3455555555555554443
No 424
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.28 E-value=3.4e+02 Score=26.57 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=9.5
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 007970 297 CQQLQIDKAKELLREMAD 314 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~ 314 (583)
...+++..|.++|..+..
T Consensus 142 ~n~~~y~aA~~~l~~l~~ 159 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLR 159 (379)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 345555555555555543
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.60 E-value=27 Score=27.68 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=20.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
..|.-.+|-.+|.+|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555667777777777777776 45555544
No 426
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.14 E-value=1.7e+02 Score=22.38 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (583)
...++|..+.+.+...+. .....-..-+..+...|++++|+ ..-. ....||...|-+|. -.+.|-.+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~--~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQ--CHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHT--TS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhcc--cCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 345666666666666542 11222222233455667777771 1111 13346666665553 3566766777766
Q ss_pred HHHHHHCC
Q 007970 416 IERMKENG 423 (583)
Q Consensus 416 ~~~~~~~g 423 (583)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66665443
No 427
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.76 E-value=1.1e+02 Score=29.96 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCC
Q 007970 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209 (583)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (583)
+...|++.++-.|++..|+++++.+.-.. ..+|.++.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~--------------------------~~l~~~V~----------------- 160 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNK--------------------------KGLYTKVP----------------- 160 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCccc--------------------------chhhccCc-----------------
Confidence 45567888899999999999987764311 01222222
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (583)
.....++..+.-+|.-.+++.+|.+.|....-
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999988754
No 428
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.54 E-value=3.7e+02 Score=26.25 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---------CCC
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI---------GVP 283 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~ 283 (583)
...+..+...|..+|+++.|++.|.+.+..= ......+..|..+|....-.|+|..+.....+.... .++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 4567888899999999999999998866530 011122445666666667778887777776666543 133
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
+...++..+.....+ ++..|.+.|-..
T Consensus 229 ~kl~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 444445555444433 666666655443
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.42 E-value=47 Score=26.42 Aligned_cols=18 Identities=22% Similarity=0.120 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHhCCCcc
Q 007970 110 HLLVFVLERILEMGITLC 127 (583)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~ 127 (583)
.+|-.+|+.|++.|.+||
T Consensus 112 ~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CcHHHHHHHHHhCCCCCc
Confidence 344455555555555444
No 430
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.34 E-value=5.1e+02 Score=27.70 Aligned_cols=328 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh----------
Q 007970 75 KKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL---------- 144 (583)
Q Consensus 75 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------- 144 (583)
+...+++.++.-..-..|....+..-... +..-...|.-+-..+...| ..+...+..=+..+++..+|
T Consensus 289 e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~G-TT~D~FlR~NL~WlskAtNWaKFtAtAsLG 366 (929)
T KOG2062|consen 289 EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAG-TTSDTFLRNNLDWLSKATNWAKFTATASLG 366 (929)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcC-CcchHHHHhchhHHhhcchHhhhhhhhhcc
Q ss_pred -------HHHHHHHHHHHhhh-HHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH
Q 007970 145 -------EIAETIVQAMREGR-RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216 (583)
Q Consensus 145 -------~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (583)
.+|.+++.-..... +....+...-.+.+...-..|......+.+...+.. ..+..+-
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~---------------~~~e~v~ 431 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT---------------AENEVVR 431 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHh---------------ccchhhh
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
...--++.-.|.-..-.++|+.++.............-..-+..+.--..-.+|++-+.........-...--..+.-++
T Consensus 432 hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL 511 (929)
T KOG2062|consen 432 HGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIAL 511 (929)
T ss_pred hhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHH
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 376 (583)
..-|+.++|..+++++...........-.-.+..+|+..|+.....+++.-.... +.-|..-...+.-++.-..+++..
T Consensus 512 ~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 512 VVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhc
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
..+.+-+.+.++.....-+-.+|.-+|+-.|. .+|+.+++.|..
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
No 431
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.89 E-value=49 Score=22.52 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
...++.++..+++..-.++++..+.+....|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444444
No 432
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.78 E-value=3.1e+02 Score=25.10 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007970 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398 (583)
Q Consensus 319 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 398 (583)
.-|+.....+...|.+.+++.+|...|-. |-.|+...+..++......|...+ ++...-.+
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~e---------------~dlfi~Ra 147 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPSE---------------ADLFIARA 147 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS-----------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCcc---------------hhHHHHHH
Confidence 34566777777888888888877766522 111222222223322222222222 22222233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
+ --|.-.++...|...+....+.
T Consensus 148 V-L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 V-LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred H-HHHHHhcCHHHHHHHHHHHHHH
Confidence 3 3466678888888888776643
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.76 E-value=2.2e+02 Score=26.53 Aligned_cols=42 Identities=5% Similarity=0.107 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
++++.+.+.++.|.-..+..+.-.+.+.=.+.+.+.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344555555555555555555555555555555555555554
No 434
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.47 E-value=1.9e+02 Score=22.61 Aligned_cols=68 Identities=15% Similarity=0.010 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHH----HHHHhhhhHHHHHHH
Q 007970 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALA----DICVRAAFFRKALEI 501 (583)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~----~~~~~~g~~~~A~~~ 501 (583)
|...+..|..++...|++++++.-....+..+...+ .+.-|. ..|...+ .++-..|+.++|++.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG-----------EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~ 122 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG-----------ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKE 122 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-------------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc-----------ccccccchhHHHHHHHHHHHHHhcCChHHHHHH
Confidence 345566777788889999988877776665543221 234444 4554443 466788999999999
Q ss_pred HHHH
Q 007970 502 VACM 505 (583)
Q Consensus 502 ~~~~ 505 (583)
|+..
T Consensus 123 fr~a 126 (144)
T PF12968_consen 123 FRMA 126 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.23 E-value=1.8e+02 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.285 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILE 121 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 121 (583)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888999999998888776
No 436
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=37.93 E-value=3.5e+02 Score=25.47 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
+..+..+.|+..+|.+.|..+.++..+..-......|+.++....-+.+...++-+.-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344456777777777777666422211122334556666666555555555554443
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.35 E-value=3e+02 Score=24.46 Aligned_cols=68 Identities=7% Similarity=0.106 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHh
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY--TTVVSALVKAGSMDRARQVLAEMTR 279 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~ 279 (583)
.+...-+|.|+--|.-...+.+|-+.|..-.....+ ..+..++ ..-|......|+.+.|++....+..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~--~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPP--SIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCc--cCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 344444555655555555555565555444332110 1222222 2344555667777777776666543
No 438
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=37.21 E-value=6.4e+02 Score=28.27 Aligned_cols=97 Identities=9% Similarity=0.062 Sum_probs=61.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHH-------HHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT-------VVSALVKAGS---MDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~ 287 (583)
++-+++...+.++.|+..|+++... .+-....|.+ ++.-....|+ +++|+.-|+.+...--.| -
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 553 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRES----FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAP--L 553 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhc----CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCc--h
Confidence 4447888899999999999999875 3322333332 3333334444 667777777766432222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 320 (583)
-|---.-.|-+.|++++-.+.+.-..+.....|
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 343344468888999888887777766555455
No 439
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=36.98 E-value=70 Score=17.12 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhc
Q 007970 373 PKLANKVFDEMLR 385 (583)
Q Consensus 373 ~~~a~~~~~~~~~ 385 (583)
.+.|..+|+++.+
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 440
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=36.11 E-value=5.9e+02 Score=27.57 Aligned_cols=64 Identities=9% Similarity=-0.020 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHH---HcCCChHHHHHHHHHHHh
Q 007970 92 DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY---VGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~ 156 (583)
+...+..||..+.+.|++++....-..|.+. .+.++..|..-+... ...+...++..+|++...
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 3445666777777777777777666666665 355556555433322 223455555555555543
No 441
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.56 E-value=1.2e+02 Score=20.38 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=21.4
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCChhHHHHH
Q 007970 70 NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCA-----RASRKHLLVFV 115 (583)
Q Consensus 70 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~~~ 115 (583)
..|++=+|-++++.+-.....+....+..+|.... +.|+...|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45666666666666654322233444444444332 33455444443
No 442
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.25 E-value=2.2e+02 Score=23.95 Aligned_cols=61 Identities=8% Similarity=-0.066 Sum_probs=41.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH
Q 007970 84 MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 84 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
+.+.|++.+..- ..++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 445566555443 3556666666677788888988888876677776666677777776654
No 443
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=34.85 E-value=7e+02 Score=28.02 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCCHHHHHH
Q 007970 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK-AKELLREMADDAKIEPDVVSYNI 327 (583)
Q Consensus 249 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~~ 327 (583)
+|...-...+.++.+.+..+. +..+.. .++..+-...+.++...+..+. +...+..+.+ .+|...-..
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~a 794 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAA 794 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHH
Confidence 444444555555555544322 112222 3455666666666666655432 3444445543 356777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 007970 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407 (583)
Q Consensus 328 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (583)
.+.++...+....+...+..+... ++...-...+.++...+.. ++...+..+.++ ++...-...+.++.+..
T Consensus 795 A~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D----~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 795 ALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAAD-VAVPALVEALTD----PHLDVRKAAVLALTRWP 866 (897)
T ss_pred HHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhcccc-chHHHHHHHhcC----CCHHHHHHHHHHHhccC
Confidence 777777777665554444444432 3555555666677666653 455555555553 56666666667776653
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
....+...+..+.+. +|..+-.....+
T Consensus 867 ~~~~a~~~L~~al~D---~d~~Vr~~A~~a 893 (897)
T PRK13800 867 GDPAARDALTTALTD---SDADVRAYARRA 893 (897)
T ss_pred CCHHHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 344566666666653 344444444333
No 444
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.36 E-value=3.9e+02 Score=24.98 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-----CCCcchhHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM-----GITLCMTTFQ 132 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 132 (583)
...-...+......|++..|++++.+..+.- . .-.-|+++=..- .++++-....+.+.+. -...|+..|.
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~ 201 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKYS 201 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3344556777778899999999988876631 0 001111111110 1222322222222221 1257889999
Q ss_pred HHHHHHHcCCChHHHHHH
Q 007970 133 SLVAAYVGFGDLEIAETI 150 (583)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~ 150 (583)
.+..+|.-.|+...+..-
T Consensus 202 ~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 202 KVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 999999999977665543
No 445
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=4.1e+02 Score=25.15 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERM 419 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (583)
..+.....-||+.|+.+.|++.+.+.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444555566666666665555443
No 446
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.60 E-value=3.3e+02 Score=26.80 Aligned_cols=68 Identities=12% Similarity=-0.026 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
.+...|++.++-.|++..|++.++.+.-... + +-..+.+- ..++..+.-+|.-.+++.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~----~------l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKK----G------LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccc----h------hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778889999999988776532100 0 01122333 3677788889999999999999999874
No 447
>PRK11619 lytic murein transglycosylase; Provisional
Probab=33.11 E-value=6.3e+02 Score=26.97 Aligned_cols=180 Identities=8% Similarity=-0.006 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
..+.......+...+|...+...... ..+.....--+....+.++++.+...+..|.... .-...-.--+.+++
T Consensus 283 ~~lA~~~a~~~~~~~a~~w~~~~~~~-----~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~ 356 (644)
T PRK11619 283 DIVAWRLMGNDVTDEQAKWRDDVIMR-----SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLL 356 (644)
T ss_pred HHHHHHHHhccCCHHHHHHHHhcccc-----cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHH
Confidence 33333333332345555555544332 1233444445556668899999998888876532 23444555678888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA-LTFFN-EMRARGIAPTKISYTTLMKAFALSSQPK 374 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 374 (583)
...|+.++|...|..+.. ..+ .|..+...- .|..-.. ..... .... +. . ..-..-+..+...|...
T Consensus 357 ~~~g~~~~A~~~~~~~a~----~~~--fYG~LAa~~--Lg~~~~~~~~~~~~~~~~--~~-~-~~~~~ra~~L~~~g~~~ 424 (644)
T PRK11619 357 LEQGRKAEAEEILRQLMQ----QRG--FYPMVAAQR--LGEEYPLKIDKAPKPDSA--LT-Q-GPEMARVRELMYWNMDN 424 (644)
T ss_pred HHcCCHHHHHHHHHHHhc----CCC--cHHHHHHHH--cCCCCCCCCCCCCchhhh--hc-c-ChHHHHHHHHHHCCCHH
Confidence 889999999999999843 122 344333222 2221000 00000 0000 00 0 01123344566778899
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (583)
.|...+..+... .+......+.....+.|.++.++.....
T Consensus 425 ~a~~ew~~~~~~----~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 425 TARSEWANLVAS----RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 999888888763 3444555666666778888887766654
No 448
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.74 E-value=4.8e+02 Score=25.49 Aligned_cols=54 Identities=13% Similarity=-0.133 Sum_probs=34.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHH--hcCCHhHHHHHHHH
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVAT----YGSLANGIS--LARKPGEALLLWKE 453 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~----~~~l~~~~~--~~g~~~~a~~~~~~ 453 (583)
+..+.+.+++..|.++|.++.....+|+... +..+..+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3456677888899999988887654444433 333444443 35577788888774
No 449
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.33 E-value=5.7e+02 Score=26.23 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 4666788888888888888777
No 450
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.30 E-value=3.2e+02 Score=26.09 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=51.9
Q ss_pred hcCCc-chHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 70 NLGKP-KKFLQLFDQMHEFGAKPD----VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 70 ~~g~~-~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
..|-. ++++.+++.+.+. -|+ +..|-+++......|.++.++.+|++.+..|..|-...-..++..+.
T Consensus 114 ~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34443 4677777777663 244 34588888888899999999999999999999988887777777665
No 451
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.21 E-value=2.6e+02 Score=22.17 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVA-TYGSLANGISLARKPGEALLLWK 452 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 452 (583)
+..++|..|...|+--... .|......+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566677777666543332 34445555666777777777665
No 452
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=31.60 E-value=6.5e+02 Score=26.68 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcC
Q 007970 94 LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141 (583)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (583)
..|. +|-.|.++|.+++|.++....... .......|...+..|...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3453 455577888888888877444333 344556666777777654
No 453
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.72 E-value=2.3e+02 Score=20.80 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007970 285 NRITYNILLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
|...--.+...+...|++++|++.+-.+++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444455555555555554444443
No 454
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.48 E-value=2.3e+02 Score=20.77 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=35.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP-DVLTYNVMIKLCARASR 108 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~ 108 (583)
.|.|...--.+...+...|++++|++.+-.+.+..... +...=..++..+.-.|.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 45577888888888999999999999888888764332 23334455555554444
No 455
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=5e+02 Score=24.70 Aligned_cols=88 Identities=15% Similarity=0.014 Sum_probs=57.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENGF-YP--NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (583)
..-|.+..++..|...|.+-++... .| +...|+.-..+-...|++..|+.-...+... +
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------------------~ 149 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------------------K 149 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------------------C
Confidence 3456677788888888877765432 12 3445666666666678888888777777654 6
Q ss_pred CCH-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 477 PDE-ELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 477 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
|+. ..|.-=..++....++.+|..+.++.
T Consensus 150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 765 45555556667777777777766665
No 456
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.38 E-value=6.1e+02 Score=25.63 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEE--HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLG 557 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 557 (583)
..+..|..+++-.|+++.|..++-.... ....|...+..+.|+++.. |+...|...++.
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~-------------------G~~q~al~~lk~ 680 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLML-------------------GRSQDALARLKQ 680 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhc-------------------CCCcchHHHHHh
Confidence 4677788899999999999999955422 2445666666666666633 666777766654
Q ss_pred C
Q 007970 558 L 558 (583)
Q Consensus 558 ~ 558 (583)
-
T Consensus 681 ~ 681 (696)
T KOG2471|consen 681 C 681 (696)
T ss_pred c
Confidence 4
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.30 E-value=1.6e+02 Score=29.24 Aligned_cols=105 Identities=12% Similarity=-0.019 Sum_probs=60.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 007970 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISY-TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407 (583)
Q Consensus 329 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (583)
...+...+.++.|+.++.++++. .|+...| ..-..++.+.+++..|..=+.++++. .+.....|..=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 34455667777888888877775 4543333 33336677777777777766666652 1222333333344445555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGIS 439 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 439 (583)
++.+|+..|+.... +.|+..-+...+.-|.
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 66666666666554 4666666665555543
No 458
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.20 E-value=4.7e+02 Score=24.33 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGA 238 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~ 238 (583)
..|...+-.+|+.++|.+++-.
T Consensus 135 ~~L~~ikee~Gdi~sA~Dilcn 156 (439)
T COG5071 135 QLLSQIKEEQGDIKSAQDILCN 156 (439)
T ss_pred HHHHHHHHHhcchhHHHHHHhc
Confidence 4566777788888888877643
No 459
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.94 E-value=2.9e+02 Score=21.72 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 007970 12 AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQ 83 (583)
Q Consensus 12 ~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 83 (583)
+|-.|-.+=.+...+.+++|..-+.+....-++++....-..---|...+..|..++...|++++++.--+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~ 80 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR 80 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 455555444444334488888777777664333222111000011555666777777888887776554433
No 460
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.69 E-value=1.9e+02 Score=19.66 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 475 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
+.|....++.++..+++-.-.++++..+.++.+.|. -+...|..- +..++|
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~-vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQ-VRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHH-HHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH-HHHHHH
Confidence 367778899999999999999999999999998875 456666655 444444
No 461
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.59 E-value=4.8e+02 Score=24.16 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=38.4
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----
Q 007970 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL---- 334 (583)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 334 (583)
..+++..+...+......+. ......+...|.. ..+..+|..+|..... . -.......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~-~---g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA-D---GLAEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh-c---ccHHHHHhHHHHHhcCCCc
Confidence 34566677777766665432 1333333333332 2345556666654432 1 122222223333332
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 007970 335 IDDSAGALTFFNEMRARG 352 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~ 352 (583)
..+..+|...|+.....|
T Consensus 126 ~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 126 PLDLVKALKYYEKAAKLG 143 (292)
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 224555555555555554
No 462
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.14 E-value=3.3e+02 Score=22.18 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=37.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 83 QMHEFGAKPDVLTYNVMIKLCARA-SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 83 ~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
.+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344556654433 23455555544 45778888888888877666666666666666666654
No 463
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.13 E-value=6.9e+02 Score=25.86 Aligned_cols=174 Identities=13% Similarity=0.095 Sum_probs=95.3
Q ss_pred cCChhHHHHHHHHHHHhCCCc------------chhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 007970 106 ASRKHLLVFVLERILEMGITL------------CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (583)
...++++...|.-....- .| ...++-.+..++...|+.+.|..++++..-
T Consensus 251 s~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly----------------- 312 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY----------------- 312 (665)
T ss_pred chHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH-----------------
Confidence 345677877777666542 22 223444555678888998888887765542
Q ss_pred cccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHH---HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC
Q 007970 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT---TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250 (583)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 250 (583)
.|+++......+..-..-++...+-|..-|. ..+..+.+.|-+..|+++.+.+.+.. ..-|
T Consensus 313 -------------~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd---p~eD 376 (665)
T KOG2422|consen 313 -------------VFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD---PSED 376 (665)
T ss_pred -------------HHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CcCC
Confidence 2222221111111111111122223333333 33556678899999999988888752 3336
Q ss_pred HHHHHHHHHHHH-HcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 007970 251 HVTYTTVVSALV-KAGSMDRARQVLAEMTRI---GVPANRITYNILLKGYCQQLQ---IDKAKELLREMA 313 (583)
Q Consensus 251 ~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~ 313 (583)
+.....+|+.|+ +..+++=.+++++..... ..-||-..-.+|+..|.+... -+.|...+.+++
T Consensus 377 Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 377 PLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 677777787775 456777777777666432 234554444455555555444 344444444443
No 464
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.11 E-value=4.1e+02 Score=24.81 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=24.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
+..+.+..++....+.+..+. ....-...+..+...|++..|++++.+...
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334444444444444444442 222333444555566666666666655543
No 465
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.39 E-value=5.2e+02 Score=24.22 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 007970 210 APNSRIYTTLMKGYMN--EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA 260 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (583)
.+....++.+|+-|-- .+--++..+++..+. +..++...-.+++.+
T Consensus 108 ~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk-----~F~e~Er~KLA~~Ta 155 (412)
T KOG2297|consen 108 RNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLK-----LFEENERKKLAMLTA 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHH
Confidence 3666777888875532 222233333333332 255555544444443
No 466
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.25 E-value=4.6e+02 Score=23.56 Aligned_cols=60 Identities=7% Similarity=0.007 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHhHHHHHHHHHHHH
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI-SLARKPGEALLLWKEIKER 457 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 457 (583)
-++..+-+.|+++++.++++++...+...+..-.+.+..+| ...|....+++.+..+.+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 35566777888888888888888876666766667666666 2345556666666666554
No 467
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.17 E-value=5.9e+02 Score=24.75 Aligned_cols=65 Identities=8% Similarity=-0.133 Sum_probs=45.5
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHhHHHHHHHHHHH
Q 007970 392 DIVAWNML---VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI-SLARKPGEALLLWKEIKE 456 (583)
Q Consensus 392 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~ 456 (583)
|...|.++ |..+.+.|.+..|+++.+-+...+..-|+......|..| .+.++++--+++++....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 567788899999999999988765443666666666665 467788877877776554
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.80 E-value=2.3e+02 Score=21.74 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=20.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 65 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 107 (583)
+..+...+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3344444445555555555555544444444333444444444
No 469
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.70 E-value=1.8e+02 Score=22.36 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH
Q 007970 98 VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666677788899999988876677777777777777777654
No 470
>PF13934 ELYS: Nuclear pore complex assembly
Probab=26.20 E-value=4.7e+02 Score=23.31 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=44.0
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 360 YTTLMKAFA--LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 360 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
|...++++. ..+++++|.+.+..- .+.|+. -.-++.++...|+.+.|+.+++...-. ..+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP----SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC----CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 334444433 335566666655222 222222 123566666677777777777765422 1122233333333
Q ss_pred HHhcCCHhHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIK 455 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~ 455 (583)
...+...+|..+-+...
T Consensus 151 -La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYP 167 (226)
T ss_pred -HHcCCHHHHHHHHHhCc
Confidence 45577777777666543
No 471
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=1e+03 Score=27.17 Aligned_cols=130 Identities=11% Similarity=0.064 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
.-|...++.+-+.+..+++.++-....+.-+...+.-..+++.+.+.....|.+-+|...+-.-... ..-..+...++
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 3477888999999999999998888777521111112346777777777788877776554321110 11123455666
Q ss_pred HHHHhcCCHH------------HHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 294 KGYCQQLQID------------KAKE-LLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFN 346 (583)
Q Consensus 294 ~~~~~~~~~~------------~A~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 346 (583)
-.++.+|.++ +... +++..-+ .........|+.|-..+...+++.+|-.++-
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaR-s~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAAR-SSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhh-cCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 6777777654 3333 3333322 2222233457777777778888888765543
No 472
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.66 E-value=2.3e+02 Score=21.99 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 62 NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 62 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 107 (583)
..++..+...+..-.|.++++.+.+.+...+..|.---|..+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3455555555556666666666666555555444333344444443
No 473
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.58 E-value=5.2e+02 Score=23.64 Aligned_cols=27 Identities=26% Similarity=0.161 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007970 391 VDIVAWNMLVEGYCRMGLVEEAKRIIE 417 (583)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 417 (583)
-++.....+...|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 456777788888888888888776663
No 474
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=25.49 E-value=4.6e+02 Score=26.00 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------------------------------------
Q 007970 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL------------------------------------ 369 (583)
Q Consensus 326 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~------------------------------------ 369 (583)
+.+..-++..|.++.|++++++ +.|+..-...-..++..|..
T Consensus 122 S~laadhvAAGsFetAm~LLnr--QiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~ 199 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNR--QIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPL 199 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHH--HC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB---
T ss_pred CCcHHHHHHhCCHHHHHHHHHH--HhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcC
Q ss_pred -----------------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 370 -----------------SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432 (583)
Q Consensus 370 -----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 432 (583)
.|++.+|+..|..++. ...+...-...+.+++.+++....+. +..
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~-----------~i~l~vv~~~~E~~e~~eli~icrEY-------ilg 261 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILH-----------SIPLLVVESREEEDEAKELIEICREY-------ILG 261 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-----------HHHC--BSSCHHHHHHHHHHHHHHHH-------HHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------HhheeeecCHHHHHHHHHHHHHHHHH-------HHH
Q ss_pred HHHHHHHhc------CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 433 SLANGISLA------RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE--ELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 433 ~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
..+..-.+. .+..+.+++.--+-.. .++|.+ -++...+..+.+.+++.-|..+-++
T Consensus 262 l~iEl~Rr~l~~~~~~~~kR~lELAAYFThc----------------~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArR 325 (422)
T PF06957_consen 262 LSIELERRELPKDPVEDQKRNLELAAYFTHC----------------KLQPSHLILALRSAMSQAFKLKNFITAASFARR 325 (422)
T ss_dssp HHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS-------------------HHHHHHHHHHHHHHCCCTTBHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHhcC----------------CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHhhhh
Q 007970 505 MEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 505 ~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
+++.+-.|....-..-++....+
T Consensus 326 LLel~p~~~~a~qArKil~~~e~ 348 (422)
T PF06957_consen 326 LLELNPSPEVAEQARKILQACER 348 (422)
T ss_dssp HHCT--SCHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHHHhc
No 475
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.40 E-value=1.7e+02 Score=22.74 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH
Q 007970 97 NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4567777777778899999999999887777777666777777776543
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.32 E-value=4.1e+02 Score=22.33 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
.++.-.|.++++.+.+.+..++..|.-..+..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444455555555555554444444444444444433
No 477
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=25.08 E-value=3.2e+02 Score=20.97 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=21.7
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 66 NACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 66 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
..+.+.|+|++|+ .. ......||...|-+|- -.+.|-.+.+..-+.++...|
T Consensus 48 ~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEAL---LL-PQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHHH---HH-HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHHH---Hh-cccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 3345666666661 11 1112235555554433 224555555555555554444
No 478
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.02 E-value=6.7e+02 Score=24.66 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=13.0
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 007970 489 CVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~ 507 (583)
..+.|+++.-...+++..+
T Consensus 327 AVr~gdlkkF~~~leq~k~ 345 (493)
T KOG2581|consen 327 AVRLGDLKKFNETLEQFKD 345 (493)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3577887777777776643
No 479
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.59 E-value=3.7e+02 Score=21.22 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 340 GALTFFNEMRARGIAPT-KISYTTLMKAFALSSQPKLANKVFDE 382 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 382 (583)
.+.++|+.|...|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666554332 44455555556666666666666653
No 480
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.33 E-value=2.8e+02 Score=22.65 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=39.6
Q ss_pred ccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007970 52 SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR 108 (583)
Q Consensus 52 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 108 (583)
.|.+++.. -..++..+.+.++.-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 15 ~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 15 AGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred cCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34554443 346788888888889999999999998877666664445566666553
No 481
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.13 E-value=6.9e+02 Score=24.15 Aligned_cols=97 Identities=5% Similarity=-0.094 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcch----hHHHHHHHHHHcCCChHHHHHHHHHHHh-h---h--HHHHHH
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCM----TTFQSLVAAYVGFGDLEIAETIVQAMRE-G---R--RDVCKI 164 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~---~--~~~~~~ 164 (583)
+.+.+-.++.+.+.....+++..+.+..- .+.. .....++..+.+.+++..+...++.-.. . . .+...+
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~-~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKM-QPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHh-ccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 34555566666666666555555554431 2222 2334567777777877666655542211 1 1 112222
Q ss_pred HHhhhhccccccCCCCCCCcHHHHHhhc
Q 007970 165 IRELDLEDYSSENEGDDDDDDEVFEKLL 192 (583)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 192 (583)
+.-+--.+..+....+++.|.-+|+.++
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICV 210 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHH
Confidence 3333344556677899999999999987
No 482
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.06 E-value=7.5e+02 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
..+.+.|+.++..|.+.|..|....-..+..+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 36677777777777776665554443333333
No 483
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.87 E-value=1.5e+02 Score=28.01 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI-VAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 413 (583)
.|.++.|++.|-..+... ++....|..-.+++.+.+++..|+.=+....+ +.||. .-|-.--.+..-.|+|++|-
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHHHH
Confidence 344555555555544432 23333343344444555555555554444433 12221 12222223334445666666
Q ss_pred HHHHHHHHCCCCC
Q 007970 414 RIIERMKENGFYP 426 (583)
Q Consensus 414 ~~~~~~~~~g~~p 426 (583)
..|....+.++.+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666665554443
No 484
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.23 E-value=3.3e+02 Score=21.02 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=17.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 99 MIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
++..+.++...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555666777777777777777776
No 485
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=9.1e+02 Score=25.06 Aligned_cols=56 Identities=13% Similarity=-0.070 Sum_probs=33.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHhHHHHHHHHHHH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS-LARKPGEALLLWKEIKE 456 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 456 (583)
..+.+.|.+..|.++-+.+.+....-|+.....+|..|+ ++.+|.--+++++....
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 445566777777777777766543335555566666553 45566666666655533
No 486
>PHA02875 ankyrin repeat protein; Provisional
Probab=21.74 E-value=7.8e+02 Score=24.25 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=25.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 007970 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRI--TYNILLKGYCQQLQIDKAKELLR 310 (583)
Q Consensus 256 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~ 310 (583)
+.+..++..|+.+-+. .+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 37 tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 37 SPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred CHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 3444555667765433 334445443321 11223445556777776666554
No 487
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.68 E-value=1e+03 Score=25.64 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHhcC--CCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-
Q 007970 15 TVVSRLAASG--DDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP- 91 (583)
Q Consensus 15 ~li~~~~~~g--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~- 91 (583)
.+++.|.... ..+.++....+..+.+. .++.-+......++... .|+...++.+++++...|-..
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----------Egi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~I 232 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDS----------EKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKV 232 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHH----------cCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCc
Q ss_pred ------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhH
Q 007970 92 ------------DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTT 130 (583)
Q Consensus 92 ------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 130 (583)
+......|+.++.. ++...++.+++++...|+.+....
T Consensus 233 t~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 233 AENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred CHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHH
No 488
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=21.04 E-value=7e+02 Score=23.44 Aligned_cols=160 Identities=18% Similarity=0.288 Sum_probs=77.0
Q ss_pred CCHHHHHHHH-HHHHhcCC-hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 007970 211 PNSRIYTTLM-KGYMNEGR-VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288 (583)
Q Consensus 211 ~~~~~~~~li-~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (583)
++..+++.|. ..+.+.|= ..-|.++|+..... -+ .+.++.++.+-+.-+.-+++ +||+-.+
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~---i~~lis~Lrkg~md~rLmef--------fPpnkrs 225 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KD---INDLISSLRKGKMDDRLMEF--------FPPNKRS 225 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------cc---HHHHHHHHHhcChHhHHHHh--------cCCcchh
Confidence 4444444444 33444442 23356666665542 11 34555555443333333333 3777777
Q ss_pred HHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCC
Q 007970 289 YNILLKGYCQQLQ-----------IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE-MRARGIAPT 356 (583)
Q Consensus 289 ~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~~~~p~ 356 (583)
...+...+...|- ...|.+-++.. |..-......+++.....++ |.+.+ -|+
T Consensus 226 ~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~---------------L~~q~s~e~p~~evi~~VKee~k~~n-lPe 289 (412)
T KOG2297|consen 226 VEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKE---------------LQEQVSEEDPVKEVILYVKEEMKRNN-LPE 289 (412)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhccCCCHHHHHHHHHHHHHhcC-CCC
Confidence 6666666555443 22232222222 22222333445555555544 55554 445
Q ss_pred HH----HHHHHHHHHHhcCCHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007970 357 KI----SYTTLMKAFALSSQPK-LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 357 ~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 413 (583)
.. .|..++++-.-..+-+ -|.+.++ ....|..|+.+++..|+.+-.+
T Consensus 290 ~eVi~ivWs~iMsaveWnKkeelva~qalr----------hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 290 TEVIGIVWSGIMSAVEWNKKEELVAEQALR----------HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred ceEEeeeHhhhhHHHhhchHHHHHHHHHHH----------HHHhhhHHHHHHhcCChHHHHH
Confidence 43 4666665543222111 1223332 3446888899999998876543
No 489
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=1.2e+03 Score=26.04 Aligned_cols=71 Identities=8% Similarity=-0.007 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 487 (583)
..+.-.+.|.++...--.-|..++..-..-+...|++..+++++.++.+.. +-.++...+..++.
T Consensus 1211 ~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~---------------~es~t~~~~~~~~e 1275 (1304)
T KOG1114|consen 1211 KLDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEEN---------------GESATKDVAVLLAE 1275 (1304)
T ss_pred hhhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhc---------------cccchhHHHHHHHH
Confidence 345555666666543222355566666666677899999999999988853 22666666666666
Q ss_pred HHHhhh
Q 007970 488 ICVRAA 493 (583)
Q Consensus 488 ~~~~~g 493 (583)
.+...|
T Consensus 1276 l~~~Lg 1281 (1304)
T KOG1114|consen 1276 LLENLG 1281 (1304)
T ss_pred HHHHhC
Confidence 665555
No 490
>PRK09857 putative transposase; Provisional
Probab=20.72 E-value=7e+02 Score=23.34 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 427 (583)
+..++......++.++..++++.+.+. .+.......++..-+.+.|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~--~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER--SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555545566666666666666542 333334444566666666766778888888888776544
No 491
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=20.62 E-value=5.7e+02 Score=22.26 Aligned_cols=60 Identities=5% Similarity=0.041 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcch-hHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 96 YNVMIKLCARASRKHLLVFVLERILEMGITLCM-TTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
.+.++..|...|+++.|-++|.-++... +.|. ..|..-+..+.+.+......+.++.+..
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 3444455555555555555555544432 2221 1333334444444444443345544443
No 492
>PHA00425 DNA packaging protein, small subunit
Probab=20.53 E-value=3.2e+02 Score=19.33 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+.+.|..++..+.. .-+.++..||++-..+.++.- .-..+.||..+..-+..++
T Consensus 14 DTE~a~~mL~DL~d--dekRtPQLYnAIgKlL~RHkF-----------~isKl~pD~~iLg~la~~l 67 (88)
T PHA00425 14 DTEMAQRMLADLKD--DEKRTPQLYNAIGKLLDRHKF-----------QISKLQPDENILGGLAAAL 67 (88)
T ss_pred hHHHHHHHHHHhcC--ccccChHHHHHHHHHHHHhcc-----------cccccCCcHHHHHHHHHHH
Confidence 56677788877765 455677888888877776641 1223678887776665543
No 493
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=20.44 E-value=7.6e+02 Score=23.62 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHH--HHHHHHHHhhhhHHHHHHHHHHHHH---
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL--DALADICVRAAFFRKALEIVACMEE--- 507 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~--- 507 (583)
.++....+.++.++|+++++++.+.... .-.|+...| ...++++...|+..++.+.+.+...
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~-------------~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld 146 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKE-------------YKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLD 146 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHh-------------hccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 3444455667899999999999876432 125666444 4456777888999999999988865
Q ss_pred --cCCCCCH
Q 007970 508 --HGIPPNK 514 (583)
Q Consensus 508 --~~~~p~~ 514 (583)
-+++|+.
T Consensus 147 ~~~~v~~~V 155 (380)
T KOG2908|consen 147 SLDGVTSNV 155 (380)
T ss_pred cccCCChhh
Confidence 4555543
No 494
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.33 E-value=3.6e+02 Score=19.77 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=18.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
..|+.+.|.+++..+.+ .+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~r------g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIVQ------KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhcc------CCcHHHHHHHHHHHcCchhhh
Confidence 34555555555555542 122344555555555544333
No 495
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.31 E-value=3.4e+02 Score=29.58 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcH
Q 007970 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 185 (583)
+.++++.+.+.+...-.| .++|..+.+.|-.+-|+...+.=..+ -......|+++.|+
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR--------------F~LaLe~gnle~al 663 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR--------------FELALECGNLEVAL 663 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh--------------eeeehhcCCHHHHH
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 007970 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265 (583)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 265 (583)
+.-.++ .+..+|..|.......|+.+-|+..|+..+. |..|--.|.-.|
T Consensus 664 e~akkl-------------------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn------------fekLsfLYliTg 712 (1202)
T KOG0292|consen 664 EAAKKL-------------------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN------------FEKLSFLYLITG 712 (1202)
T ss_pred HHHHhc-------------------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh------------hhheeEEEEEeC
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHH---------------------HHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007970 266 SMDRARQVLAEMTRIGVPANRITYNILLKG---------------------YCQQLQIDKAKELLREMADDAKIEPD 321 (583)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~~~~~A~~~~~~~~~~~~~~~~ 321 (583)
+.++..++.+-+...+ .......++|... ....|.-++|.++.++..++...-|+
T Consensus 713 n~eKL~Km~~iae~r~-D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~ 788 (1202)
T KOG0292|consen 713 NLEKLSKMMKIAEIRN-DATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPE 788 (1202)
T ss_pred CHHHHHHHHHHHHhhh-hhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCC
Done!