Query 007970
Match_columns 583
No_of_seqs 555 out of 3554
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 14:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-38 3.9E-43 332.3 45.8 449 8-517 82-586 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-35 7.7E-40 307.4 37.3 443 55-558 81-576 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-27 5.8E-32 233.8 47.5 381 17-493 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-26 5.3E-31 226.9 46.8 368 64-515 5-373 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.2E-28 2.1E-32 240.4 26.3 195 253-491 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 6.6E-28 2.3E-32 240.2 25.9 204 305-527 9-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.1E-22 7.1E-27 205.4 43.0 417 9-457 5-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.5E-23 2.2E-27 209.2 39.0 427 57-517 5-485 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2E-22 6.8E-27 201.9 41.3 347 54-454 22-406 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.6E-22 5.5E-27 202.5 40.2 337 8-419 24-406 (450)
11 3fp2_A TPR repeat-containing p 99.9 3.1E-22 1.1E-26 205.3 36.9 440 10-515 25-496 (537)
12 3fp2_A TPR repeat-containing p 99.9 8.3E-21 2.8E-25 194.7 40.6 438 57-558 24-488 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 8.6E-19 3E-23 169.5 41.3 315 57-457 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1E-18 3.4E-23 169.1 40.7 330 9-438 2-350 (359)
15 2xm6_A Protein corresponding t 99.9 1.8E-16 6.3E-21 159.9 52.7 355 55-510 36-434 (490)
16 2xm6_A Protein corresponding t 99.9 5.6E-16 1.9E-20 156.4 52.3 351 9-457 38-432 (490)
17 3hym_B Cell division cycle pro 99.8 3.5E-18 1.2E-22 163.2 33.1 285 92-438 21-314 (330)
18 3hym_B Cell division cycle pro 99.8 5.5E-18 1.9E-22 161.8 32.9 296 54-410 18-322 (330)
19 2ooe_A Cleavage stimulation fa 99.8 5.8E-16 2E-20 158.0 45.1 410 9-507 12-491 (530)
20 1fch_A Peroxisomal targeting s 99.8 6.4E-18 2.2E-22 164.2 28.0 305 175-505 35-356 (368)
21 1fch_A Peroxisomal targeting s 99.8 4.4E-18 1.5E-22 165.3 26.1 237 213-457 98-359 (368)
22 4eqf_A PEX5-related protein; a 99.8 2.2E-17 7.4E-22 160.2 27.6 280 212-504 64-352 (365)
23 2ooe_A Cleavage stimulation fa 99.8 5.3E-15 1.8E-19 150.8 46.5 396 54-528 9-476 (530)
24 4eqf_A PEX5-related protein; a 99.8 6.5E-17 2.2E-21 156.8 27.0 280 56-383 63-353 (365)
25 3cv0_A Peroxisome targeting si 99.8 2.2E-16 7.6E-21 150.4 28.6 278 212-505 20-312 (327)
26 4g1t_A Interferon-induced prot 99.8 9.4E-16 3.2E-20 154.3 34.5 393 56-517 49-469 (472)
27 3mkr_A Coatomer subunit epsilo 99.8 2.3E-16 7.8E-21 146.7 27.5 277 220-556 6-289 (291)
28 1b89_A Protein (clathrin heavy 99.8 3.3E-17 1.1E-21 155.3 21.1 283 22-414 15-303 (449)
29 1xi4_A Clathrin heavy chain; a 99.8 2.8E-14 9.4E-19 151.0 44.9 380 14-500 989-1376(1630)
30 4g1t_A Interferon-induced prot 99.8 1.3E-15 4.4E-20 153.3 32.7 373 9-422 50-459 (472)
31 3cv0_A Peroxisome targeting si 99.8 6.4E-16 2.2E-20 147.2 28.5 98 10-122 21-118 (327)
32 1xi4_A Clathrin heavy chain; a 99.8 4.7E-14 1.6E-18 149.3 43.4 381 61-556 988-1379(1630)
33 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.5E-20 140.5 29.3 249 214-502 35-288 (291)
34 1b89_A Protein (clathrin heavy 99.7 2.2E-16 7.5E-21 149.8 21.0 291 58-449 6-303 (449)
35 3spa_A Mtrpol, DNA-directed RN 99.7 4.6E-17 1.6E-21 166.6 9.5 122 9-140 126-248 (1134)
36 3uq3_A Heat shock protein STI1 99.7 3.9E-14 1.3E-18 129.6 27.2 224 252-507 6-235 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.7 4E-16 1.4E-20 159.8 12.7 115 322-437 127-245 (1134)
38 3uq3_A Heat shock protein STI1 99.7 7E-14 2.4E-18 128.0 26.4 226 213-457 5-236 (258)
39 2pl2_A Hypothetical conserved 99.6 2.6E-14 8.9E-19 126.9 22.3 199 283-506 2-212 (217)
40 2pl2_A Hypothetical conserved 99.6 4.3E-14 1.5E-18 125.4 22.1 211 210-455 2-212 (217)
41 3u4t_A TPR repeat-containing p 99.6 2.7E-13 9.4E-18 125.2 28.1 245 253-520 5-260 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 1.4E-13 4.9E-18 136.5 27.4 380 16-506 9-419 (452)
43 2ho1_A Type 4 fimbrial biogene 99.6 8.1E-13 2.8E-17 120.4 28.0 208 213-431 37-245 (252)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.6E-14 1.2E-18 131.3 19.1 250 225-502 17-269 (275)
45 2vq2_A PILW, putative fimbrial 99.6 8.6E-13 2.9E-17 117.8 26.3 213 210-432 5-219 (225)
46 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-12 3.7E-17 119.6 27.4 201 251-457 37-238 (252)
47 2h6f_A Protein farnesyltransfe 99.6 1.2E-12 4.1E-17 125.8 28.4 230 10-312 97-344 (382)
48 2vq2_A PILW, putative fimbrial 99.6 2E-12 6.9E-17 115.4 28.2 209 286-517 8-218 (225)
49 2h6f_A Protein farnesyltransfe 99.6 1.5E-12 5.3E-17 125.0 29.0 247 94-403 98-363 (382)
50 1ouv_A Conserved hypothetical 99.6 1.2E-11 4.1E-16 114.1 34.2 225 210-457 3-251 (273)
51 3e4b_A ALGK; tetratricopeptide 99.6 2.7E-13 9.4E-18 134.5 24.5 348 63-510 8-389 (452)
52 3u4t_A TPR repeat-containing p 99.6 3.7E-13 1.3E-17 124.3 23.8 235 214-457 4-250 (272)
53 3sf4_A G-protein-signaling mod 99.6 3E-13 1E-17 132.9 24.2 282 210-507 6-335 (406)
54 1ouv_A Conserved hypothetical 99.6 9.4E-12 3.2E-16 114.9 31.7 224 250-509 5-252 (273)
55 2q7f_A YRRB protein; TPR, prot 99.6 3.3E-13 1.1E-17 122.2 21.4 200 213-457 23-222 (243)
56 2q7f_A YRRB protein; TPR, prot 99.6 4.8E-13 1.7E-17 121.1 22.2 201 57-315 22-222 (243)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.1E-13 7.1E-18 126.2 19.1 253 172-451 12-269 (275)
58 3ro2_A PINS homolog, G-protein 99.5 6.3E-13 2.1E-17 126.7 22.7 279 213-507 5-331 (338)
59 4a1s_A PINS, partner of inscut 99.5 9E-13 3.1E-17 129.8 22.6 279 213-507 48-371 (411)
60 3sf4_A G-protein-signaling mod 99.5 6.8E-13 2.3E-17 130.3 21.7 233 213-445 87-364 (406)
61 4a1s_A PINS, partner of inscut 99.5 5E-13 1.7E-17 131.6 19.0 281 11-350 49-371 (411)
62 3ro2_A PINS homolog, G-protein 99.5 9.9E-13 3.4E-17 125.4 19.8 285 96-457 8-332 (338)
63 4e6h_A MRNA 3'-END-processing 99.5 3.3E-10 1.1E-14 116.2 38.7 430 7-457 63-570 (679)
64 2ond_A Cleavage stimulation fa 99.5 6.9E-11 2.4E-15 111.1 29.7 236 212-457 7-270 (308)
65 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-11 5.1E-16 105.9 22.2 165 321-507 4-169 (184)
66 3ulq_A Response regulator aspa 99.5 1.3E-11 4.6E-16 120.1 24.1 232 257-507 109-367 (383)
67 2ond_A Cleavage stimulation fa 99.5 1E-10 3.6E-15 109.8 29.3 237 9-314 7-269 (308)
68 3nf1_A KLC 1, kinesin light ch 99.5 8.3E-13 2.8E-17 124.5 14.9 250 210-507 24-306 (311)
69 3vtx_A MAMA; tetratricopeptide 99.4 3.1E-11 1.1E-15 103.9 23.2 167 285-457 4-170 (184)
70 4abn_A Tetratricopeptide repea 99.4 8E-12 2.7E-16 124.8 22.2 213 267-505 84-318 (474)
71 4abn_A Tetratricopeptide repea 99.4 2.6E-11 9.1E-16 121.0 25.1 213 301-558 83-318 (474)
72 3ulq_A Response regulator aspa 99.4 4.9E-11 1.7E-15 116.1 25.9 239 217-458 107-369 (383)
73 4e6h_A MRNA 3'-END-processing 99.4 4.9E-09 1.7E-13 107.6 40.7 381 54-508 62-533 (679)
74 3nf1_A KLC 1, kinesin light ch 99.4 4.4E-12 1.5E-16 119.4 15.4 140 212-351 68-224 (311)
75 3q15_A PSP28, response regulat 99.4 1.1E-09 3.9E-14 106.1 30.3 238 216-457 104-365 (378)
76 3q15_A PSP28, response regulat 99.4 3.7E-10 1.3E-14 109.6 26.8 234 255-507 105-364 (378)
77 1hz4_A MALT regulatory protein 99.3 2.2E-09 7.4E-14 104.0 29.2 213 215-457 95-322 (373)
78 1hz4_A MALT regulatory protein 99.3 9.2E-10 3.1E-14 106.6 26.6 278 215-507 16-321 (373)
79 4i17_A Hypothetical protein; T 99.3 6E-10 2.1E-14 99.5 23.2 205 284-520 5-219 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 4.3E-10 1.5E-14 96.6 20.1 162 325-507 11-172 (186)
81 3as5_A MAMA; tetratricopeptide 99.3 5.5E-10 1.9E-14 95.9 20.6 165 287-457 9-173 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.2 3.8E-10 1.3E-14 117.3 19.8 164 322-507 9-173 (723)
83 4i17_A Hypothetical protein; T 99.2 2E-09 7E-14 96.0 21.9 202 56-315 5-209 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.2 6.7E-10 2.3E-14 115.4 21.1 169 54-279 5-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.2 2.3E-10 7.8E-15 105.9 15.0 231 225-456 13-280 (283)
86 1qqe_A Vesicular transport pro 99.2 7.5E-10 2.6E-14 103.0 17.2 235 230-506 2-267 (292)
87 1qqe_A Vesicular transport pro 99.1 4.9E-09 1.7E-13 97.4 21.1 182 73-314 32-227 (292)
88 3edt_B KLC 2, kinesin light ch 99.1 7.2E-10 2.5E-14 102.5 15.1 209 212-422 42-281 (283)
89 3qky_A Outer membrane assembly 99.1 1.8E-08 6.1E-13 92.0 23.1 192 284-515 13-229 (261)
90 3qky_A Outer membrane assembly 99.1 9.5E-09 3.2E-13 93.8 20.5 186 248-457 12-224 (261)
91 3mv2_B Coatomer subunit epsilo 99.1 1.5E-07 5.2E-12 85.6 26.4 256 220-516 20-288 (310)
92 3mv2_B Coatomer subunit epsilo 99.0 9.6E-08 3.3E-12 86.9 23.3 218 215-457 47-282 (310)
93 2fo7_A Synthetic consensus TPR 99.0 1.8E-08 6.3E-13 80.9 16.8 131 11-157 2-132 (136)
94 2fo7_A Synthetic consensus TPR 99.0 3E-08 1E-12 79.7 17.9 129 325-457 4-132 (136)
95 3urz_A Uncharacterized protein 99.0 3.8E-08 1.3E-12 86.2 18.6 134 362-518 59-194 (208)
96 2uy1_A Cleavage stimulation fa 99.0 5.7E-06 2E-10 82.4 35.3 376 8-458 13-414 (493)
97 3dra_A Protein farnesyltransfe 99.0 1.2E-06 3.9E-11 80.7 27.9 226 19-314 41-286 (306)
98 3urz_A Uncharacterized protein 98.9 4.6E-08 1.6E-12 85.7 17.9 125 328-457 60-186 (208)
99 2pzi_A Probable serine/threoni 98.9 3.1E-08 1.1E-12 103.4 18.5 158 333-515 402-568 (681)
100 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.9E-07 6.5E-12 82.9 20.6 185 250-457 3-213 (225)
101 2ifu_A Gamma-SNAP; membrane fu 98.9 3E-08 1E-12 92.9 16.0 201 225-455 3-222 (307)
102 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.1E-07 7.1E-12 82.6 20.1 185 285-509 3-214 (225)
103 3qou_A Protein YBBN; thioredox 98.9 9.1E-08 3.1E-12 88.5 18.2 168 125-349 114-282 (287)
104 3rjv_A Putative SEL1 repeat pr 98.9 2.4E-07 8.4E-12 81.2 20.1 176 305-510 5-199 (212)
105 2pzi_A Probable serine/threoni 98.9 9.3E-08 3.2E-12 99.9 20.3 153 297-456 402-562 (681)
106 3rjv_A Putative SEL1 repeat pr 98.8 1E-06 3.5E-11 77.2 22.7 175 269-457 4-197 (212)
107 3dra_A Protein farnesyltransfe 98.8 6.3E-06 2.2E-10 75.8 28.5 229 64-350 39-286 (306)
108 2r5s_A Uncharacterized protein 98.8 8.8E-08 3E-12 81.3 14.9 130 212-347 39-169 (176)
109 4ga2_A E3 SUMO-protein ligase 98.8 2.8E-08 9.5E-13 81.8 10.8 7 227-233 79-85 (150)
110 4ga2_A E3 SUMO-protein ligase 98.8 1.7E-08 5.7E-13 83.1 9.4 123 331-457 6-129 (150)
111 3qou_A Protein YBBN; thioredox 98.8 2.4E-07 8.2E-12 85.6 18.3 165 91-313 115-282 (287)
112 2vsy_A XCC0866; transferase, g 98.8 2.2E-07 7.4E-12 95.3 19.6 150 336-507 3-156 (568)
113 2r5s_A Uncharacterized protein 98.8 7.4E-08 2.5E-12 81.8 13.6 160 291-456 11-172 (176)
114 2uy1_A Cleavage stimulation fa 98.8 1.4E-05 4.9E-10 79.5 31.9 374 28-507 11-412 (493)
115 2qfc_A PLCR protein; TPR, HTH, 98.8 1.7E-06 5.9E-11 80.2 22.6 171 324-507 77-265 (293)
116 3u3w_A Transcriptional activat 98.8 2E-06 6.7E-11 79.8 22.7 168 292-459 81-268 (293)
117 2vsy_A XCC0866; transferase, g 98.7 3.6E-07 1.2E-11 93.7 18.8 153 264-422 2-157 (568)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 9.2E-07 3.1E-11 77.6 18.2 126 325-457 9-150 (213)
119 3u3w_A Transcriptional activat 98.7 1.8E-05 6.1E-10 73.3 27.4 170 326-507 79-265 (293)
120 4gco_A Protein STI-1; structur 98.7 5.7E-07 1.9E-11 71.2 14.7 103 393-516 13-116 (126)
121 3gyz_A Chaperone protein IPGC; 98.7 3E-07 1E-11 75.2 13.1 103 57-161 35-137 (151)
122 1a17_A Serine/threonine protei 98.7 2E-06 6.7E-11 71.9 18.4 128 358-506 14-144 (166)
123 2ifu_A Gamma-SNAP; membrane fu 98.7 2.5E-06 8.4E-11 79.7 20.6 136 12-156 38-183 (307)
124 3q7a_A Farnesyltransferase alp 98.7 1.9E-05 6.5E-10 73.4 26.0 231 12-313 56-329 (349)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2E-06 6.7E-11 75.4 18.4 145 360-514 9-154 (213)
126 2qfc_A PLCR protein; TPR, HTH, 98.6 2.1E-06 7.2E-11 79.6 19.0 168 290-457 79-266 (293)
127 3gyz_A Chaperone protein IPGC; 98.6 6.3E-07 2.2E-11 73.3 13.4 103 392-515 35-138 (151)
128 1a17_A Serine/threonine protei 98.6 1.6E-06 5.3E-11 72.5 16.1 129 213-348 13-143 (166)
129 4gco_A Protein STI-1; structur 98.6 1.5E-06 5.1E-11 68.8 14.3 103 59-163 14-116 (126)
130 2lni_A Stress-induced-phosphop 98.6 2.6E-06 8.8E-11 68.0 15.2 99 356-457 15-113 (133)
131 2vgx_A Chaperone SYCD; alterna 98.6 1E-06 3.5E-11 72.0 12.8 108 379-507 9-117 (148)
132 3q7a_A Farnesyltransferase alp 98.6 6.8E-05 2.3E-09 69.7 26.3 185 59-301 55-257 (349)
133 1na0_A Designed protein CTPR3; 98.5 2.8E-06 9.4E-11 66.8 14.9 114 10-139 9-122 (125)
134 2vgx_A Chaperone SYCD; alterna 98.5 1.2E-06 4.1E-11 71.7 13.0 100 211-315 19-118 (148)
135 1na0_A Designed protein CTPR3; 98.5 4.3E-06 1.5E-10 65.6 16.0 98 357-457 9-106 (125)
136 2c2l_A CHIP, carboxy terminus 98.5 1.7E-06 5.7E-11 79.6 15.4 194 321-559 3-197 (281)
137 3gw4_A Uncharacterized protein 98.5 3E-06 1E-10 73.5 16.0 160 334-507 4-175 (203)
138 2vyi_A SGTA protein; chaperone 98.5 2.1E-06 7.2E-11 68.2 13.6 121 8-144 10-130 (131)
139 2e2e_A Formate-dependent nitri 98.5 1.4E-06 4.9E-11 73.8 13.2 119 368-507 21-143 (177)
140 2lni_A Stress-induced-phosphop 98.5 5.1E-06 1.8E-10 66.2 15.8 119 209-334 12-130 (133)
141 2c2l_A CHIP, carboxy terminus 98.5 8.8E-06 3E-10 74.7 19.4 98 212-314 3-100 (281)
142 2vyi_A SGTA protein; chaperone 98.5 3.3E-06 1.1E-10 67.0 14.5 116 358-494 13-129 (131)
143 1p5q_A FKBP52, FK506-binding p 98.5 5E-06 1.7E-10 78.6 17.7 95 393-506 196-292 (336)
144 1p5q_A FKBP52, FK506-binding p 98.5 7.2E-07 2.5E-11 84.4 11.9 133 57-241 146-293 (336)
145 4gcn_A Protein STI-1; structur 98.5 2.6E-06 8.8E-11 67.5 13.0 111 393-520 8-122 (127)
146 2e2e_A Formate-dependent nitri 98.5 4.7E-06 1.6E-10 70.5 15.6 122 175-315 20-144 (177)
147 4f3v_A ESX-1 secretion system 98.5 8.1E-06 2.8E-10 73.2 17.4 199 222-434 16-247 (282)
148 3upv_A Heat shock protein STI1 98.5 3.7E-06 1.3E-10 66.5 13.8 96 393-507 4-100 (126)
149 2xcb_A PCRH, regulatory protei 98.5 1.9E-06 6.4E-11 70.0 11.9 97 392-507 17-114 (142)
150 3gw4_A Uncharacterized protein 98.4 2.9E-06 1E-10 73.5 13.8 139 212-350 25-175 (203)
151 4f3v_A ESX-1 secretion system 98.4 1.6E-05 5.5E-10 71.3 18.2 187 263-457 18-237 (282)
152 3dss_A Geranylgeranyl transfer 98.4 0.00031 1.1E-08 64.9 26.4 189 302-516 90-310 (331)
153 3upv_A Heat shock protein STI1 98.4 1.1E-05 3.6E-10 63.8 14.6 97 358-457 5-101 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.4 1.7E-05 5.8E-10 61.4 15.5 102 393-515 4-106 (118)
155 3sz7_A HSC70 cochaperone (SGT) 98.4 2.3E-05 7.9E-10 65.2 16.5 98 357-457 11-108 (164)
156 3sz7_A HSC70 cochaperone (SGT) 98.3 1.5E-05 5E-10 66.4 15.0 107 210-321 8-114 (164)
157 1elr_A TPR2A-domain of HOP; HO 98.3 9.3E-06 3.2E-10 64.3 13.3 98 358-457 5-108 (131)
158 4gcn_A Protein STI-1; structur 98.3 1.2E-05 4.1E-10 63.6 13.7 97 359-457 10-112 (127)
159 3q49_B STIP1 homology and U bo 98.3 1.8E-05 6.2E-10 63.4 15.0 101 355-458 7-107 (137)
160 2fbn_A 70 kDa peptidylprolyl i 98.3 1.4E-05 4.8E-10 69.0 15.2 94 394-506 89-184 (198)
161 2xcb_A PCRH, regulatory protei 98.3 7.8E-06 2.7E-10 66.2 12.8 99 212-315 17-115 (142)
162 1hxi_A PEX5, peroxisome target 98.3 1.1E-05 3.8E-10 63.2 13.2 93 396-507 20-113 (121)
163 1elw_A TPR1-domain of HOP; HOP 98.3 2.3E-05 8E-10 60.6 15.0 110 9-134 3-112 (118)
164 1elr_A TPR2A-domain of HOP; HO 98.3 1.4E-05 4.7E-10 63.3 13.8 110 393-519 4-117 (131)
165 2dba_A Smooth muscle cell asso 98.3 3.7E-05 1.3E-09 62.4 16.0 103 391-515 26-133 (148)
166 3q49_B STIP1 homology and U bo 98.3 2.2E-05 7.5E-10 62.9 13.9 104 55-160 6-109 (137)
167 2fbn_A 70 kDa peptidylprolyl i 98.3 3.1E-05 1.1E-09 66.8 15.7 116 393-528 38-169 (198)
168 4b4t_Q 26S proteasome regulato 98.3 9.1E-05 3.1E-09 72.8 21.1 59 220-278 11-82 (434)
169 4b4t_Q 26S proteasome regulato 98.3 4.6E-05 1.6E-09 75.0 18.9 171 325-507 58-244 (434)
170 3dss_A Geranylgeranyl transfer 98.3 0.0019 6.5E-08 59.7 28.0 223 223-457 39-304 (331)
171 2kck_A TPR repeat; tetratricop 98.2 1.6E-05 5.3E-10 61.0 12.0 97 213-314 6-105 (112)
172 2kck_A TPR repeat; tetratricop 98.2 1.7E-05 5.7E-10 60.8 11.5 98 357-457 6-106 (112)
173 2dba_A Smooth muscle cell asso 98.2 6.8E-05 2.3E-09 60.8 15.0 97 10-122 28-128 (148)
174 1hxi_A PEX5, peroxisome target 98.1 1.8E-05 6.1E-10 61.9 10.4 99 60-160 19-117 (121)
175 3ro3_A PINS homolog, G-protein 98.1 4E-05 1.4E-09 63.2 12.7 137 359-507 11-157 (164)
176 2xev_A YBGF; tetratricopeptide 98.1 0.0001 3.5E-09 58.1 14.4 92 397-507 6-104 (129)
177 3rkv_A Putative peptidylprolyl 98.1 4.7E-05 1.6E-09 63.2 12.4 102 394-515 12-131 (162)
178 1wao_1 Serine/threonine protei 98.1 2E-05 6.9E-10 78.3 11.4 118 365-503 14-134 (477)
179 2xev_A YBGF; tetratricopeptide 98.1 0.00015 5E-09 57.2 14.5 93 362-457 7-105 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 7.7E-05 2.6E-09 73.7 15.4 94 393-505 317-412 (457)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00013 4.3E-09 72.2 15.9 115 393-528 268-398 (457)
182 1ihg_A Cyclophilin 40; ppiase 98.0 6.4E-05 2.2E-09 71.8 13.2 62 428-507 273-335 (370)
183 3rkv_A Putative peptidylprolyl 98.0 0.00012 4.1E-09 60.6 13.4 65 392-457 62-126 (162)
184 3ro3_A PINS homolog, G-protein 98.0 6.5E-05 2.2E-09 61.9 11.6 139 10-156 9-157 (164)
185 2hr2_A Hypothetical protein; a 98.0 0.00015 5E-09 58.6 12.7 111 394-517 12-145 (159)
186 1ihg_A Cyclophilin 40; ppiase 97.9 0.00016 5.3E-09 69.1 14.9 139 323-501 224-363 (370)
187 3k9i_A BH0479 protein; putativ 97.9 2.5E-05 8.5E-10 60.7 7.8 92 70-162 2-95 (117)
188 1wao_1 Serine/threonine protei 97.9 1E-05 3.4E-10 80.4 6.8 125 13-153 9-135 (477)
189 3k9i_A BH0479 protein; putativ 97.9 3.1E-05 1E-09 60.1 8.0 89 226-316 3-91 (117)
190 3n71_A Histone lysine methyltr 97.9 0.00032 1.1E-08 69.2 16.0 132 366-507 318-463 (490)
191 2hr2_A Hypothetical protein; a 97.9 0.00026 8.8E-09 57.2 12.5 102 58-160 11-134 (159)
192 2kat_A Uncharacterized protein 97.8 0.00082 2.8E-08 51.6 14.3 80 375-457 3-82 (115)
193 3n71_A Histone lysine methyltr 97.8 0.00022 7.6E-09 70.3 13.1 147 5-157 294-464 (490)
194 1zu2_A Mitochondrial import re 97.8 0.00015 5E-09 58.5 9.6 96 404-520 13-130 (158)
195 2if4_A ATFKBP42; FKBP-like, al 97.8 8.6E-05 2.9E-09 70.1 9.5 131 10-157 179-328 (338)
196 2l6j_A TPR repeat-containing p 97.7 9.2E-05 3.2E-09 56.5 7.7 68 427-514 3-71 (111)
197 2if4_A ATFKBP42; FKBP-like, al 97.7 9.8E-05 3.4E-09 69.7 9.1 148 286-457 179-328 (338)
198 2l6j_A TPR repeat-containing p 97.7 3.2E-05 1.1E-09 59.2 4.5 93 392-503 3-102 (111)
199 1dce_A Protein (RAB geranylger 97.7 0.0035 1.2E-07 63.4 20.1 172 268-446 46-244 (567)
200 1dce_A Protein (RAB geranylger 97.6 0.0055 1.9E-07 61.9 20.9 172 72-301 43-241 (567)
201 3lvg_A Clathrin heavy chain 1; 97.6 7.4E-07 2.5E-11 83.8 -7.2 265 10-342 54-324 (624)
202 2kat_A Uncharacterized protein 97.6 0.00038 1.3E-08 53.6 9.3 79 231-314 3-81 (115)
203 3ma5_A Tetratricopeptide repea 97.6 0.00097 3.3E-08 49.7 11.3 67 390-457 4-70 (100)
204 1na3_A Designed protein CTPR2; 97.5 0.00091 3.1E-08 48.5 10.5 64 393-457 9-72 (91)
205 1klx_A Cysteine rich protein B 97.5 0.0052 1.8E-07 48.9 14.9 110 336-457 9-126 (138)
206 1klx_A Cysteine rich protein B 97.5 0.0044 1.5E-07 49.4 14.2 112 371-510 9-128 (138)
207 1zu2_A Mitochondrial import re 97.5 0.00049 1.7E-08 55.4 8.4 98 369-487 14-132 (158)
208 1na3_A Designed protein CTPR2; 97.4 0.0018 6.2E-08 46.9 10.8 80 213-297 9-88 (91)
209 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.9E-08 49.3 8.3 65 210-278 4-68 (100)
210 2kc7_A BFR218_protein; tetratr 97.1 0.0031 1E-07 46.7 8.9 80 434-558 6-87 (99)
211 3ly7_A Transcriptional activat 97.1 0.048 1.6E-06 50.7 18.3 68 388-457 272-339 (372)
212 3qww_A SET and MYND domain-con 96.9 0.0075 2.5E-07 58.4 12.1 93 405-507 310-410 (433)
213 3mkq_A Coatomer beta'-subunit; 96.9 0.057 1.9E-06 57.6 20.3 84 211-312 679-762 (814)
214 3ly7_A Transcriptional activat 96.8 0.029 1E-06 52.1 14.8 74 425-518 274-347 (372)
215 3qwp_A SET and MYND domain-con 96.8 0.019 6.4E-07 55.7 13.9 111 400-520 294-415 (429)
216 2kc7_A BFR218_protein; tetratr 96.6 0.014 4.9E-07 42.8 9.6 58 399-457 6-64 (99)
217 3bee_A Putative YFRE protein; 96.6 0.017 5.8E-07 42.0 9.5 66 425-508 3-72 (93)
218 1pc2_A Mitochondria fission pr 96.6 0.032 1.1E-06 44.4 11.1 90 409-518 14-108 (152)
219 3qww_A SET and MYND domain-con 96.5 0.013 4.3E-07 56.8 10.3 63 287-349 341-409 (433)
220 3qwp_A SET and MYND domain-con 96.4 0.034 1.2E-06 53.9 13.0 95 256-350 292-399 (429)
221 4ady_A RPN2, 26S proteasome re 96.2 1.6 5.4E-05 46.1 24.6 221 221-455 382-621 (963)
222 2v5f_A Prolyl 4-hydroxylase su 95.8 0.094 3.2E-06 39.0 10.1 68 56-123 3-76 (104)
223 3bee_A Putative YFRE protein; 95.8 0.22 7.4E-06 36.0 11.6 44 268-312 26-69 (93)
224 2v5f_A Prolyl 4-hydroxylase su 95.8 0.15 5.1E-06 37.8 11.1 66 392-457 4-75 (104)
225 3mkq_B Coatomer subunit alpha; 95.7 0.65 2.2E-05 37.9 16.1 101 332-454 15-115 (177)
226 3mkq_A Coatomer beta'-subunit; 95.7 0.45 1.5E-05 50.6 19.0 75 255-348 633-707 (814)
227 3mkq_B Coatomer subunit alpha; 95.7 0.7 2.4E-05 37.7 18.0 102 260-383 14-115 (177)
228 1pc2_A Mitochondria fission pr 95.5 0.22 7.5E-06 39.6 11.5 66 391-457 30-100 (152)
229 3u64_A Protein TP_0956; tetrat 95.1 0.33 1.1E-05 43.2 12.3 89 409-517 179-280 (301)
230 3u64_A Protein TP_0956; tetrat 95.1 0.23 7.8E-06 44.2 11.2 125 9-154 153-295 (301)
231 1nzn_A CGI-135 protein, fissio 94.9 0.25 8.6E-06 37.7 9.7 91 407-517 15-110 (126)
232 1wy6_A Hypothetical protein ST 94.5 1.2 4.2E-05 34.1 14.8 65 214-282 92-156 (172)
233 1wy6_A Hypothetical protein ST 94.0 1.5 5.3E-05 33.6 17.2 140 262-425 18-157 (172)
234 3lvg_A Clathrin heavy chain 1; 93.8 0.0099 3.4E-07 56.6 -0.4 377 9-450 82-534 (624)
235 1nzn_A CGI-135 protein, fissio 93.6 0.52 1.8E-05 35.9 8.9 87 337-427 16-106 (126)
236 4b4t_P 26S proteasome regulato 93.3 6.3 0.00022 38.1 18.6 239 210-452 53-319 (445)
237 4h7y_A Dual specificity protei 93.2 0.84 2.9E-05 35.8 9.6 114 319-436 10-136 (161)
238 4b4t_P 26S proteasome regulato 93.0 6.9 0.00023 37.9 20.5 194 226-420 29-245 (445)
239 4gns_B Protein CSD3, chitin bi 92.3 0.77 2.6E-05 47.4 10.9 53 435-505 344-397 (754)
240 4h7y_A Dual specificity protei 91.6 4 0.00014 32.1 12.9 104 9-127 12-128 (161)
241 3txn_A 26S proteasome regulato 91.4 6.9 0.00024 36.9 15.4 146 360-520 22-182 (394)
242 2ff4_A Probable regulatory pro 91.4 1.6 5.4E-05 41.5 11.4 72 430-518 173-249 (388)
243 3o48_A Mitochondria fission 1 90.7 4.5 0.00016 31.0 11.5 78 423-520 35-117 (134)
244 3ffl_A Anaphase-promoting comp 90.7 1.8 6.2E-05 34.7 9.1 109 398-506 25-149 (167)
245 4fhn_B Nucleoporin NUP120; pro 90.4 12 0.0004 41.4 18.7 170 99-304 818-989 (1139)
246 4fhn_B Nucleoporin NUP120; pro 90.0 6 0.0002 43.8 15.9 144 328-494 818-986 (1139)
247 1y8m_A FIS1; mitochondria, unk 89.9 5.7 0.0002 30.9 12.4 77 424-520 35-116 (144)
248 1v54_E Cytochrome C oxidase po 89.6 4 0.00014 29.4 9.0 51 408-458 25-75 (109)
249 4gns_B Protein CSD3, chitin bi 89.2 4 0.00014 42.2 12.7 56 100-156 344-399 (754)
250 2ff4_A Probable regulatory pro 89.0 1.6 5.5E-05 41.4 9.2 75 360-436 174-253 (388)
251 1v54_E Cytochrome C oxidase po 89.0 2.4 8.1E-05 30.5 7.5 62 74-136 26-87 (109)
252 3ffl_A Anaphase-promoting comp 88.5 5.2 0.00018 32.1 10.2 114 422-562 12-152 (167)
253 2y69_E Cytochrome C oxidase su 85.7 7.1 0.00024 29.8 8.8 51 408-458 68-118 (152)
254 3o48_A Mitochondria fission 1 84.1 9.6 0.00033 29.2 9.1 74 90-163 37-113 (134)
255 2y69_E Cytochrome C oxidase su 82.1 12 0.00042 28.6 8.8 60 76-136 71-130 (152)
256 1y8m_A FIS1; mitochondria, unk 81.3 17 0.00058 28.2 11.8 68 390-457 36-106 (144)
257 3txn_A 26S proteasome regulato 79.7 41 0.0014 31.6 21.4 30 213-242 19-48 (394)
258 3lpz_A GET4 (YOR164C homolog); 79.3 38 0.0013 30.9 23.7 49 390-442 133-181 (336)
259 3lpz_A GET4 (YOR164C homolog); 75.6 48 0.0016 30.2 21.4 167 215-421 37-215 (336)
260 4b4t_R RPN7, 26S proteasome re 75.0 30 0.001 33.2 12.0 100 215-315 133-237 (429)
261 1zbp_A Hypothetical protein VP 73.2 25 0.00085 30.8 9.6 54 296-351 7-60 (273)
262 4b4t_R RPN7, 26S proteasome re 73.1 13 0.00043 35.8 8.8 64 430-507 133-196 (429)
263 1zbp_A Hypothetical protein VP 72.0 44 0.0015 29.3 10.9 53 367-421 7-59 (273)
264 2uwj_G Type III export protein 69.2 28 0.00096 24.9 7.2 78 408-509 21-98 (115)
265 2p58_C Putative type III secre 69.0 29 0.001 24.9 8.2 76 408-507 22-97 (116)
266 2uwj_G Type III export protein 68.8 29 0.00099 24.9 7.2 77 336-423 20-98 (115)
267 2p58_C Putative type III secre 68.0 31 0.0011 24.8 7.9 77 336-423 21-99 (116)
268 3esl_A Checkpoint serine/threo 64.8 51 0.0017 27.4 9.3 55 372-426 94-148 (202)
269 3esl_A Checkpoint serine/threo 63.5 64 0.0022 26.8 10.4 54 302-355 95-148 (202)
270 2d2s_A Exocyst complex compone 62.0 30 0.001 29.8 7.9 91 63-156 23-119 (235)
271 2wpv_A GET4, UPF0363 protein Y 60.1 99 0.0034 27.9 23.3 128 292-441 39-178 (312)
272 4ady_A RPN2, 26S proteasome re 56.0 2.1E+02 0.0073 30.5 37.1 260 177-456 386-657 (963)
273 2wpv_A GET4, UPF0363 protein Y 54.0 1.3E+02 0.0043 27.2 21.4 113 215-345 35-157 (312)
274 4a1g_A Mitotic checkpoint seri 49.4 94 0.0032 24.4 9.5 51 376-426 84-134 (152)
275 2d2s_A Exocyst complex compone 43.9 1.5E+02 0.0052 25.4 9.4 91 218-312 23-117 (235)
276 4a1g_A Mitotic checkpoint seri 43.7 1.2E+02 0.004 23.9 9.4 33 323-355 102-134 (152)
277 2nsz_A Programmed cell death p 42.3 1.1E+02 0.0038 23.2 7.7 64 289-354 10-75 (129)
278 2wvi_A Mitotic checkpoint seri 42.2 1.3E+02 0.0045 24.0 9.0 52 376-427 79-130 (164)
279 2ion_A PDCD4, programmed cell 41.8 1.3E+02 0.0043 23.7 8.0 64 289-354 12-77 (152)
280 3bu8_A Telomeric repeat-bindin 41.3 1.2E+02 0.004 25.5 7.6 60 444-520 88-153 (235)
281 4b4t_S RPN3, 26S proteasome re 40.6 2.7E+02 0.0093 27.2 13.3 66 213-280 231-299 (523)
282 2wvi_A Mitotic checkpoint seri 37.0 1.6E+02 0.0054 23.5 9.5 33 323-355 97-129 (164)
283 2ijq_A Hypothetical protein; s 33.9 1.8E+02 0.0061 23.1 7.7 61 60-121 35-103 (161)
284 4aez_C MAD3, mitotic spindle c 31.4 1.5E+02 0.0053 25.0 7.2 80 76-158 95-180 (223)
285 3eiq_C Programmed cell death p 29.1 3.4E+02 0.012 25.0 16.1 68 359-428 219-288 (358)
286 4gq2_M Nucleoporin NUP120; bet 28.6 5.5E+02 0.019 27.5 12.8 64 356-421 839-925 (950)
287 2ion_A PDCD4, programmed cell 27.9 2.2E+02 0.0075 22.3 8.4 64 360-425 12-77 (152)
288 2fu4_A Ferric uptake regulatio 27.6 1.4E+02 0.0049 20.0 6.3 61 83-144 7-68 (83)
289 4aez_C MAD3, mitotic spindle c 26.7 1.6E+02 0.0056 24.8 6.5 52 375-426 132-183 (223)
290 1qsa_A Protein (soluble lytic 25.8 5.2E+02 0.018 26.0 34.7 342 4-418 66-438 (618)
291 1bpo_A Protein (clathrin); cla 24.8 4.7E+02 0.016 25.1 10.1 106 274-382 349-454 (494)
292 2zu6_B Programmed cell death p 24.7 1.1E+02 0.0037 27.6 5.5 26 480-505 167-192 (307)
293 4ets_A Ferric uptake regulatio 24.6 2.6E+02 0.0089 22.1 8.0 45 63-107 37-83 (162)
294 3lxu_X Tripeptidyl-peptidase 2 24.5 3.4E+02 0.012 30.2 10.0 77 409-505 1265-1342(1354)
295 2w57_A Ferric uptake regulatio 24.4 2.2E+02 0.0075 22.1 6.8 63 82-145 6-69 (150)
296 1mzb_A Ferric uptake regulatio 24.2 2.2E+02 0.0074 21.7 6.6 60 82-142 7-67 (136)
297 4ets_A Ferric uptake regulatio 24.0 1.5E+02 0.0052 23.5 5.8 70 75-145 14-86 (162)
298 2xig_A Ferric uptake regulatio 23.8 2.6E+02 0.0088 21.7 8.1 63 82-145 16-78 (150)
299 2f6m_A Suppressor protein STP2 23.6 1.2E+02 0.004 19.8 3.9 45 95-140 4-48 (65)
300 4b4t_S RPN3, 26S proteasome re 23.5 5.3E+02 0.018 25.2 11.6 72 4-87 225-299 (523)
301 3ltm_A Alpha-REP4; protein eng 23.4 3E+02 0.01 22.4 19.9 91 211-313 93-183 (211)
302 2b7e_A PRE-mRNA processing pro 23.3 69 0.0024 20.4 2.7 29 75-103 3-31 (59)
303 3eyy_A Putative iron uptake re 23.2 2E+02 0.0068 22.2 6.2 61 82-144 8-68 (145)
304 2fe3_A Peroxide operon regulat 23.1 2.6E+02 0.0089 21.5 7.5 63 82-145 11-73 (145)
305 2o03_A Probable zinc uptake re 22.8 1.6E+02 0.0053 22.3 5.4 43 100-142 17-59 (131)
306 2nsz_A Programmed cell death p 22.2 2.6E+02 0.0087 21.1 9.7 64 360-425 10-75 (129)
307 4gq2_M Nucleoporin NUP120; bet 22.1 7.5E+02 0.026 26.5 13.1 48 359-407 899-950 (950)
308 2zu6_B Programmed cell death p 21.9 4.3E+02 0.015 23.6 10.8 62 395-457 168-231 (307)
309 2o03_A Probable zinc uptake re 21.3 2.2E+02 0.0076 21.4 6.1 48 62-109 14-61 (131)
310 3ltm_A Alpha-REP4; protein eng 20.8 3.4E+02 0.012 22.0 20.8 169 55-296 30-198 (211)
311 2keb_A DNA polymerase subunit 20.7 2.4E+02 0.0081 20.1 6.9 58 74-133 25-87 (101)
312 2ijq_A Hypothetical protein; s 20.7 3.2E+02 0.011 21.7 8.2 54 404-457 43-104 (161)
313 1wdy_A 2-5A-dependent ribonucl 20.6 1.4E+02 0.0047 25.8 5.6 190 218-427 7-213 (285)
314 3qil_A Clathrin heavy chain 1; 20.5 28 0.00097 26.0 0.7 75 171-273 12-86 (125)
315 2v6y_A AAA family ATPase, P60 20.3 2.2E+02 0.0074 19.5 6.4 17 490-506 22-38 (83)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-38 Score=332.29 Aligned_cols=449 Identities=10% Similarity=0.023 Sum_probs=391.9
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
+++..|+.++..|.+.|+ +++|+.+|+++.. ..|+..++..++.+|.+.|++++|+.+|+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~-------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQ--YKCAAFVGEKVLD-------------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH-------------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHccC--chHHHHHHHHHHh-------------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc
Confidence 678899999999999999 9999999999986 3578889999999999999999999999998643
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh---------------CCCcchhHHHHHHHHHHcCCChHHHHHHHH
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM---------------GITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 152 (583)
.++..+++.++.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|+
T Consensus 147 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 224 (597)
T 2xpi_A 147 --NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK 224 (597)
T ss_dssp --GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578999999999999999999999999853221 224468899999999999999999999999
Q ss_pred HHHhhhHHHHHHHHhh-----------------------------------hhccccccCCCCCCCcHHHHHhhcCCCCC
Q 007970 153 AMREGRRDVCKIIREL-----------------------------------DLEDYSSENEGDDDDDDEVFEKLLPNSIN 197 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (583)
++...+++.......+ ...+..+.+.|++++|..+|+++..
T Consensus 225 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---- 300 (597)
T 2xpi_A 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING---- 300 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT----
T ss_pred HHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc----
Confidence 9988766544332221 1225667788999999999999872
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007970 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277 (583)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 277 (583)
.+++..+|+.++.+|.+.|++++|+++|+++.+. .+.+..++..++.++.+.|++++|..+++.+
T Consensus 301 -----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 301 -----------LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI----DPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp -----------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1588999999999999999999999999999876 3446788999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007970 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357 (583)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 357 (583)
.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++...+ +.+.
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 441 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTH 441 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCS
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 8654 6678999999999999999999999999997642 4568899999999999999999999999999874 5578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYPN--VATY 431 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~ 431 (583)
.++..++.+|.+.|++++|.++|+++.+ ..+.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 9999999999999999999999999987 34567899999999999999999999999999875 66787 7899
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCC
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 511 (583)
..++.+|.+.|++++|++.++++.+.. +.+..+|..++.+|.+.|++++|.+.++++.+ +.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~ 580 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-----------------TNDANVHTAIALVYLHKKIPGLAITHLHESLA--IS 580 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cC
Confidence 999999999999999999999999861 33679999999999999999999999999986 45
Q ss_pred CCHHHH
Q 007970 512 PNKTKY 517 (583)
Q Consensus 512 p~~~~~ 517 (583)
|+....
T Consensus 581 p~~~~~ 586 (597)
T 2xpi_A 581 PNEIMA 586 (597)
T ss_dssp TTCHHH
T ss_pred CCChHH
Confidence 655433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-35 Score=307.44 Aligned_cols=443 Identities=9% Similarity=-0.001 Sum_probs=372.9
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 368899999999999999999999999999864 478899999999999999999999999988654 6789999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHH-------------HHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCC
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRD-------------VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (583)
+.+|.+.|++++|.++|+++...... .......+...+..+.+.|++++|...|++++...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 230 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD------ 230 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 99999999999999999853322100 00112334455677888999999999999987321
Q ss_pred CCCCCCCCCCCHHHH--------------------------------------HHHHHHHHhcCChhHHHHHHHHHHhcc
Q 007970 202 PPLLPKTFAPNSRIY--------------------------------------TTLMKGYMNEGRVSDTVRMLGAMRRQE 243 (583)
Q Consensus 202 ~~~~~~~~~~~~~~~--------------------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~ 243 (583)
+.+..++ +.++..|.+.|++++|.++|+.+...
T Consensus 231 --------p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 231 --------AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp --------TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred --------chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 2223333 33356677889999999999998763
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH
Q 007970 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323 (583)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 323 (583)
+++..+|..++..+.+.|++++|.++|+.+.+.+ +.+..++..++.+|.+.|++++|..+++.+.+. .+.+..
T Consensus 302 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 374 (597)
T 2xpi_A 302 ----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAV 374 (597)
T ss_dssp ----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred ----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHH
Confidence 4789999999999999999999999999999876 557888999999999999999999999999754 256788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 403 (583)
+|..++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+ ..+.+..+|+.++.+|
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHH
Confidence 99999999999999999999999998863 44688999999999999999999999999987 3456889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHH
Q 007970 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EEL 481 (583)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~ 481 (583)
.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|+++|+++.+..... +..|+ ..+
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~p~~~~~~ 518 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------------QSNEKPWAAT 518 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------CCCSGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc------------ccchhhHHHH
Confidence 99999999999999999863 4578999999999999999999999999998763210 33677 689
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
+..++.+|.+.|++++|.++++++.+.+ +.+...|..+ ..++.+. |++++|.++++++
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l-~~~~~~~-----------------g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAI-ALVYLHK-----------------KIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHH-HHHHHHT-----------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHH-HHHHHHh-----------------CCHHHHHHHHHHH
Confidence 9999999999999999999999998754 3356666665 7777776 9999999988766
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.7e-27 Score=233.78 Aligned_cols=381 Identities=14% Similarity=0.055 Sum_probs=331.0
Q ss_pred HHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHH
Q 007970 17 VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96 (583)
Q Consensus 17 i~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 96 (583)
...+.+.|+ +++|+..++++.+. .|.+...+..+...+...|++++|...++...+... .+..+|
T Consensus 6 a~~~~~~g~--~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~ 70 (388)
T 1w3b_A 6 AHREYQAGD--FEAAERHCMQLWRQ------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAY 70 (388)
T ss_dssp HHHHHHHTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHH
Confidence 345667888 99999999999875 455678888899999999999999999999988653 577899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhcccccc
Q 007970 97 NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176 (583)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (583)
..+...+.+.|++++|...|+++.+.. +.+..++..+..++.+.|++++|.+.|+.+....
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------ 131 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------------------ 131 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------
Confidence 999999999999999999999999875 5567789999999999999999999999887632
Q ss_pred CCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHH
Q 007970 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256 (583)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 256 (583)
+.+..++..+...+...|++++|.+.|.++... .+.+..+|..
T Consensus 132 ---------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 174 (388)
T 1w3b_A 132 ---------------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET----QPNFAVAWSN 174 (388)
T ss_dssp ---------------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred ---------------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHH
Confidence 344667888999999999999999999999885 3456789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 007970 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336 (583)
Q Consensus 257 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 336 (583)
+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..... +.+..++..+...+...|
T Consensus 175 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 175 LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999875 5567889999999999999999999999987653 346788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 416 (583)
++++|+..|+++.+.. +.+..++..+..++.+.|++++|...|+++.+ ..+.+..++..+...+.+.|++++|.+.+
T Consensus 252 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 252 LIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp CHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999874 44678899999999999999999999999987 45678899999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhh
Q 007970 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAA 493 (583)
Q Consensus 417 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 493 (583)
+++.+. .+.+..++..+..++.+.|++++|+..|+++.+. .|+ ...+..+..++...|
T Consensus 329 ~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 329 RKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------------------SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT------------------CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHhHHHHHHHcc
Confidence 999875 3456789999999999999999999999999864 665 467777777666554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.5e-26 Score=226.93 Aligned_cols=368 Identities=13% Similarity=0.037 Sum_probs=320.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC
Q 007970 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143 (583)
Q Consensus 64 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 143 (583)
+...+.+.|++++|++.++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45677899999999999999988653 345667778888899999999999999998875 6788999999999999999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 007970 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223 (583)
Q Consensus 144 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 223 (583)
+++|...|+++.... +.+..+|..+..++
T Consensus 83 ~~~A~~~~~~al~~~---------------------------------------------------p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK---------------------------------------------------PDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHHHHHHHC---------------------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---------------------------------------------------cchHHHHHHHHHHH
Confidence 999999999987631 34577899999999
Q ss_pred HhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303 (583)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (583)
.+.|++++|.+.|.++.+. .+.+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+..++...|+++
T Consensus 112 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999885 23345677888888999999999999999999864 556889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 383 (583)
+|...|+++++.. +.+...|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...|+++
T Consensus 187 ~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 187 LAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753 4467789999999999999999999999998863 446788999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhc
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 463 (583)
.+ ..+.+..+|..+..++.+.|++++|.+.|+++.+. .+.+..++..+...+...|++++|+..++++.+.
T Consensus 264 l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 334 (388)
T 1w3b_A 264 IE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV------ 334 (388)
T ss_dssp HH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS------
T ss_pred Hh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 87 34556889999999999999999999999999986 4668889999999999999999999999999864
Q ss_pred cccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 464 GVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 464 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.|+ ..++..++.+|.+.|++++|.+.++++.+ +.|+..
T Consensus 335 ------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~ 373 (388)
T 1w3b_A 335 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFA 373 (388)
T ss_dssp ------------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCH
T ss_pred ------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCH
Confidence 454 58899999999999999999999999985 556543
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.2e-28 Score=240.41 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 007970 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332 (583)
Q Consensus 253 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 332 (583)
.++.+|++|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+....+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------------------------
Confidence 45556666666666666666666666666666666666666666554431000
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
...+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+. |+.||..+|+++|.+|++.|++++|
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHH
Confidence 001123455555555555555555555555555555555555555555555442 5555555555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 491 (583)
.++|++|.+.|+.||..||+.|+.+|++.|+.++|.+++++|.+. ++.|+..||+.++..|..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~----------------g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL----------------VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------TSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh----------------CCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555554 445555555555554443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.6e-28 Score=240.21 Aligned_cols=204 Identities=18% Similarity=0.228 Sum_probs=175.5
Q ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 007970 305 AKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ---------PK 374 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~ 374 (583)
+..+.+.+. ..+..+. ...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. .+
T Consensus 9 ~e~L~~~~~-~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAK-KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHH-HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344445553 3444443 346788899999999999999999999999999999999999999987654 68
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
.|.++|++|.+. |+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|.++|++|
T Consensus 88 ~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999885 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
.+. |+.||..+|++|+.+|++.|++++|.+++++|++.|..|+..||..+ .+....
T Consensus 167 ~~~----------------G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l-~~~F~s 222 (501)
T 4g26_A 167 VES----------------EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI-EEWFKS 222 (501)
T ss_dssp HHT----------------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH-HHHHHS
T ss_pred Hhc----------------CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH-HHHHhc
Confidence 987 89999999999999999999999999999999999999999999887 554443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-22 Score=205.44 Aligned_cols=417 Identities=11% Similarity=0.016 Sum_probs=317.6
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
.+..|......+.+.|+ +++|+..|+++.+. .|+..+|..+..++.+.|++++|+..|+.+.+.+
T Consensus 5 ~a~~~~~~g~~~~~~g~--~~~A~~~~~~al~~-------------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK--YDDAIKYYNWALEL-------------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK 69 (514)
T ss_dssp HHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhc-------------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 35577788889999998 99999999999984 4789999999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhh-----------
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG----------- 157 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 157 (583)
+ .+..+|..+..++...|++++|...|+++.+.+ +++......++..+........+.+.+..+...
T Consensus 70 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 70 P-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred h-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 3 366789999999999999999999999999876 444444444433333222221111111100000
Q ss_pred ----------------------------------hHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcC-----CCCCC
Q 007970 158 ----------------------------------RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLP-----NSINP 198 (583)
Q Consensus 158 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 198 (583)
.++..............+...|++++|...|++++. ....+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence 001112222222222223346777777777777662 10000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
.. ....+.+..++..+..++...|++++|.+.|+.+... .|+...+..+...+...|++++|...++.+.
T Consensus 228 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 228 ED-----EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred cc-----cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 00 0000234678889999999999999999999999886 2338889999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358 (583)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 358 (583)
+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+..
T Consensus 298 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 373 (514)
T 2gw1_A 298 KLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE 373 (514)
T ss_dssp TTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred hcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence 875 5577889999999999999999999999997643 3456788899999999999999999999998863 44677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCR---MGLVEEAKRIIERMKENGFYPNVATY 431 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~ 431 (583)
.+..+...+...|++++|...++.+.+.....++ ...+..+..++.. .|++++|.+.++++.+.. +.+..++
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 452 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 8889999999999999999999998763111122 3488899999999 999999999999998763 4467888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+...+...|++++|...|+++.+.
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999986
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.5e-23 Score=209.15 Aligned_cols=427 Identities=10% Similarity=-0.029 Sum_probs=326.1
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
.+..+......+.+.|++++|+..|+.+.+.. |+..+|..+..++...|++++|+..++++.+.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35678888999999999999999999999875 789999999999999999999999999999986 667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHH----Hhhh---hccccccCC-------------------------CCCCCc
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKII----RELD---LEDYSSENE-------------------------GDDDDD 184 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~-------------------------~~~~~a 184 (583)
++.+.|++++|...|+.+....+...... .... ......... ......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999876543111100 0000 000000000 111111
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHh-----cccCCC-----CCCH
Q 007970 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN---EGRVSDTVRMLGAMRR-----QEDNAS-----HPDH 251 (583)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~~~-----~~~~ 251 (583)
..+...+.... .......+ ..+.+...+......+.. .|++++|...|+++.. ...... +.+.
T Consensus 162 ~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 162 TSMASFFGIFK--PELTFANY--DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp HHHHHHHTTSC--CCCCCSSC--CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHHHHhhcC--HHHHHHHh--cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 11111110000 00000000 012336666666666665 8999999999999887 210000 2235
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 331 (583)
..+..+...+...|++++|...++.+.+.. |+...+..+..+|...|++++|...++.+.... +.+...+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHH
Confidence 678888999999999999999999999875 338889999999999999999999999997532 4567789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (583)
+...|++++|...|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+..++..+..++.+.|++++
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999874 446778889999999999999999999999873 44567889999999999999999
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHH
Q 007970 412 AKRIIERMKENGF-YPN----VATYGSLANGISL---ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELL 482 (583)
Q Consensus 412 A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~ 482 (583)
|.+.++++.+... .++ ...+..+...+.. .|++++|+..++++.+. .| +..++
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~ 452 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------------------DPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------------------CTTCHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------------------CcccHHHH
Confidence 9999999876421 112 3488889999999 99999999999999986 44 45788
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 483 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
..+..+|.+.|++++|...+++..+ +.|+....
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~ 485 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESAD--LARTMEEK 485 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHH
Confidence 8999999999999999999999986 45665443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2e-22 Score=201.88 Aligned_cols=347 Identities=13% Similarity=0.099 Sum_probs=280.1
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.|.++..+..+...+.+.|++++|+.+|+.+.+... .+..+|..+..++...|++++|+..|+++.+.+ +.+..++..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 456788999999999999999999999999988643 468889999999999999999999999999986 567889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhhHHHH---HHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 007970 134 LVAAYVGFGDLEIAETIVQAMREGRRDVC---KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210 (583)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (583)
+..+|.+.|++++|...|+.+....++.. .....+...
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------- 140 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS--------------------------------------- 140 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH---------------------------------------
Confidence 99999999999999999999987543222 111100000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.....+..+...+...|++++|++.|+.+... .+.+...+..+..++.+.|++++|..+++.+.+.. +.+..++.
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 00112334456699999999999999999886 45678899999999999999999999999998764 56789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL------------IDGFILIDDSAGALTFFNEMRARGIAPT-- 356 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~-- 356 (583)
.+..+|...|++++|...|+++.... +.+...+..+ ...+...|++++|+.+|+++... .|+
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 99999999999999999999997642 3344455444 78899999999999999999885 344
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 007970 357 ---KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYG 432 (583)
Q Consensus 357 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 432 (583)
...+..+..++.+.|++++|...++.+.+ ..+.+..+|..+..+|...|++++|.+.++++.+. .| +...+.
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 367 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIRE 367 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHH
Confidence 34788889999999999999999999886 23557899999999999999999999999999975 45 455666
Q ss_pred HHHHH------------HHhcC-----CHhHHHHHHHHH
Q 007970 433 SLANG------------ISLAR-----KPGEALLLWKEI 454 (583)
Q Consensus 433 ~l~~~------------~~~~g-----~~~~a~~~~~~~ 454 (583)
.+..+ |...| +.+++.+.|++.
T Consensus 368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 55533 33334 556777777763
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.6e-22 Score=202.54 Aligned_cols=337 Identities=12% Similarity=0.108 Sum_probs=276.1
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
.++..|..+...+.+.|+ +++|+..|+++.+. .+.+..++..+..++...|++++|+..|+.+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~--~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQ--LADALSQFHAAVDG------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp HHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHh------------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 457789999999999999 99999999999875 4567999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcch---hHHHHH------------HHHHHcCCChHHHHHHHH
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM---TTFQSL------------VAAYVGFGDLEIAETIVQ 152 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~ 152 (583)
+. .+..++..+..++...|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...|+
T Consensus 90 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 64 357889999999999999999999999999875 4444 565555 444788888888888888
Q ss_pred HHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 007970 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (583)
.+.... +.+..++..+..+|.+.|++++|
T Consensus 168 ~~~~~~---------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 168 KILEVC---------------------------------------------------VWDAELRELRAECFIKEGEPRKA 196 (450)
T ss_dssp HHHHHC---------------------------------------------------TTCHHHHHHHHHHHHHTTCGGGG
T ss_pred HHHHhC---------------------------------------------------CCChHHHHHHHHHHHHCCCHHHH
Confidence 877531 45688899999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcC
Q 007970 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL------------LKGYCQQL 300 (583)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~ 300 (583)
++.|+.+... .+.+..++..+...+...|++++|...++.+.+.. +.+...+..+ ...|...|
T Consensus 197 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 197 ISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDG 271 (450)
T ss_dssp HHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999886 35578899999999999999999999999998764 3455555554 78899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 301 QIDKAKELLREMADDAKIEPD--VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 378 (583)
++++|..+|+++++.....+. ...|..+..++.+.|++++|+..++++.... +.+...+..+..+|...|++++|..
T Consensus 272 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999875321111 4578888999999999999999999998763 4478899999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHH------------HHHcC-----CHHHHHHHHHHH
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEG------------YCRMG-----LVEEAKRIIERM 419 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~~ 419 (583)
.|+++.+ -.+.+...+..+..+ |...| +.+++.+.++++
T Consensus 351 ~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 351 DYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999987 334456666666633 33333 456667777763
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.1e-22 Score=205.30 Aligned_cols=440 Identities=10% Similarity=0.034 Sum_probs=296.5
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|..+...+.+.|+ +++|+..|+++.+. .|.++.+|..+..+|.+.|++++|++.|+.+.+.+.
T Consensus 25 a~~~~~~g~~~~~~g~--~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 90 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKN--FNEAIKYYQYAIEL------------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90 (537)
T ss_dssp HHHHHHHHHHHHHTTC--CC-CHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcc--HHHHHHHHHHHHhh------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456666677777777 77777777777764 344677777777777777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 169 (583)
.+..++..+..++...|++++|...|+ .... .|+. ....+..+...+....|...++.+....+..........
T Consensus 91 -~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 91 -DHSKALLRRASANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 356667777777777777777777775 3222 1221 111233334444456666666666443211100000000
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHh--------cCChhHHHHHHHHHH
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS-RIYTTLMKGYMN--------EGRVSDTVRMLGAMR 240 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~~~ 240 (583)
.....+....+...+...+... ....+.. .....+...+.. .|++++|..+|+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTS---------------SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCC---------------CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhc---------------cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0000000000000000000000 0011221 122333333222 258899999999998
Q ss_pred hcccCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 241 RQEDNASHPD-------HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 241 ~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
+. .+.+ ..++..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...++++.
T Consensus 230 ~~----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 230 SA----NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HH----CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 75 2223 2356677788889999999999999999864 558889999999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 007970 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393 (583)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 393 (583)
+.. +.+..++..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+.
T Consensus 304 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 378 (537)
T 3fp2_A 304 DLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLP 378 (537)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT
T ss_pred ccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 653 4567889999999999999999999999998864 445778899999999999999999999999873 45667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHHh
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENG-----FYPNVATYGSLANGISLA----------RKPGEALLLWKEIKERC 458 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 458 (583)
..+..+..++...|++++|.+.|+++.+.. .......+..+...+... |++++|+..++++.+.
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 457 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL- 457 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-
Confidence 889999999999999999999999987532 111223345556677777 9999999999999986
Q ss_pred hhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 459 EVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.| +..++..+..+|.+.|++++|.+.+++..+. .|+..
T Consensus 458 -----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~ 496 (537)
T 3fp2_A 458 -----------------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTMD 496 (537)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--CH
T ss_pred -----------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcH
Confidence 44 4588999999999999999999999999863 34443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=8.3e-21 Score=194.71 Aligned_cols=438 Identities=11% Similarity=0.038 Sum_probs=311.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
....+..+...+.+.|++++|+..|+.+.+... .+..+|..+..++.+.|++++|++.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 467889999999999999999999999998763 478889999999999999999999999999986 667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (583)
++...|++++|...|+.+ ...++...... ..+...+...++...++.++.... +..+.....
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~l~~~~-----------~~~~~~~~~ 163 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASI------EPMLERNLNKQAMKVLNENLSKDE-----------GRGSQVLPS 163 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------------CHHHHHHHHHHHHHHHHHCC------------------CCCCC
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHH------HHHHHHHHHHHHHHHHHHHHHhCc-----------cccccccch
Confidence 999999999999999744 32222211100 000111122345555555541100 001111122
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHH-HHHHHHHHHH--------HcCChHHHHHHHHHHHhCCCCCCH-
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV-TYTTVVSALV--------KAGSMDRARQVLAEMTRIGVPANR- 286 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~- 286 (583)
...+..+....+.+.+...+..... ..+... ....+...+. ..|++++|..+++.+.+.. +.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~ 237 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSN-----YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDP 237 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCS-----SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccc-----cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcch
Confidence 3344445555555544443332221 122221 2222222221 2257899999999998764 3332
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 287 ------ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360 (583)
Q Consensus 287 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 360 (583)
.++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...|+++.... +.+..++
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 313 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTY 313 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHH
Confidence 34666778888999999999999999875 4668889999999999999999999999998864 4568889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 440 (583)
..+...+...|++++|...|+++.+. .+.+...+..+..++...|++++|.++++++.+.. +.+...+..+...+..
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 99999999999999999999999873 34567889999999999999999999999998863 4467788999999999
Q ss_pred cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHcCC
Q 007970 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA----------AFFRKALEIVACMEEHGI 510 (583)
Q Consensus 441 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 510 (583)
.|++++|+..|+++.+...... ........+..+..++.+. |++++|...++++.+.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-- 457 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQE-----------KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-- 457 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCS-----------SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHcCCcch-----------hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--
Confidence 9999999999999988642200 1122234455667788888 9999999999999864
Q ss_pred CCCH-HHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 511 PPNK-TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 511 ~p~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
.|+. ..+..+ ..++... |++++|.+.+++.
T Consensus 458 ~p~~~~~~~~l-~~~~~~~-----------------g~~~~A~~~~~~a 488 (537)
T 3fp2_A 458 DPRSEQAKIGL-AQLKLQM-----------------EKIDEAIELFEDS 488 (537)
T ss_dssp CTTCHHHHHHH-HHHHHHT-----------------TCHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HHHHHHh-----------------ccHHHHHHHHHHH
Confidence 4443 344433 5566555 7778887777654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=8.6e-19 Score=169.51 Aligned_cols=315 Identities=10% Similarity=0.044 Sum_probs=186.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
|+..+..+...+...|++++|+..|+.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345566666666666777777777766666432 245566666666666666666666666666653 335556666666
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC---CCH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA---PNS 213 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 213 (583)
++...|++++|...|+.+.... + .+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~---------------------------------------------------~~~~~~~ 108 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN---------------------------------------------------PSEQEEK 108 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC---------------------------------------------------CCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC---------------------------------------------------CcccChH
Confidence 6666666666666666665421 1 123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
..+..+...+. ...+..+...+...|++++|..+++.+.+.. +.+...+..+.
T Consensus 109 ~~~~~l~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 109 EAESQLVKADE--------------------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp HHHHHHHHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHH--------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 33333310000 0001112344455555555555555555443 33445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------------H
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY------------T 361 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------------~ 361 (583)
.++...|++++|...++++.+. .+.+...+..+...+...|++++|...|+...+.. +.+...+ .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHH
Confidence 5555555555555555555432 13344555555555555555555555555555432 1122222 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDI----VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
.+...+...|++++|...++++.+. .+.+. ..+..+..++...|++++|++.+++..+. .+.+..++..+...
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 2355677888888888888888763 22233 23555778888889999999999888875 23467788888888
Q ss_pred HHhcCCHhHHHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~ 457 (583)
+...|++++|...|+++.+.
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 88899999999999988864
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1e-18 Score=169.05 Aligned_cols=330 Identities=12% Similarity=0.104 Sum_probs=205.8
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
|+..|..+...+...|+ +++|+..|+++.+. .|.+..++..+...+...|++++|+..|+.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~g~--~~~A~~~~~~~l~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQ--LADALSQFHAAVDG------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56778888999999999 99999999999885 45578899999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC---cchhHHHHH------------HHHHHcCCChHHHHHHHHH
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT---LCMTTFQSL------------VAAYVGFGDLEIAETIVQA 153 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~ 153 (583)
. .+...+..+...+...|++++|...++++.+.. + .+...+..+ ...+...|++++|...++.
T Consensus 68 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 68 M-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3 366889999999999999999999999998874 3 344444444 3444455555555555554
Q ss_pred HHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007970 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233 (583)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (583)
+.... +.+..++..+..++...|++++|.
T Consensus 146 ~~~~~---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 146 ILEVC---------------------------------------------------VWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHC---------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhC---------------------------------------------------CCchHHHHHHHHHHHHCCCHHHHH
Confidence 44311 233445555555555555555555
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
+.++.+... .+.+..++..+...+...|++++|...++.+.+.. +.+...+..+.. +.
T Consensus 175 ~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~-----------------~~ 232 (359)
T 3ieg_A 175 SDLKAASKL----KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ-----------------VK 232 (359)
T ss_dssp HHHHHHHTT----CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-----------------HH
T ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH-----------------HH
Confidence 555555543 23344455555555555555555555555554432 112221111100 00
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 007970 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK----ISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389 (583)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (583)
.......+...+...|++++|...++++.... +.+. ..+..+..++...|++++|...++.+.+ ..
T Consensus 233 -------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~ 302 (359)
T 3ieg_A 233 -------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--ME 302 (359)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hC
Confidence 00011122445666677777777776666642 1122 2233455666677777777777777765 23
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+.+..++..+..++...|++++|.+.|+++.+.. +-+...+..+..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 4456677777777777777777777777777642 22344555555444
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.8e-16 Score=159.94 Aligned_cols=355 Identities=12% Similarity=0.044 Sum_probs=293.6
Q ss_pred CcCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCc
Q 007970 55 KPDTAAYNAVLNACAN----LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR----ASRKHLLVFVLERILEMGITL 126 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~ 126 (583)
+.++.++..+...|.. .+++++|+.+|+...+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3578888889999988 899999999999998864 56778888888988 899999999999998876
Q ss_pred chhHHHHHHHHHHc----CCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCC
Q 007970 127 CMTTFQSLVAAYVG----FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202 (583)
Q Consensus 127 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (583)
++..+..|...|.. .+++++|...|+...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------------------------------------------- 143 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE---------------------------------------------- 143 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------------------------------------
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------------------------------------------
Confidence 56777778888888 7899999999988866
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCChHHHHHHH
Q 007970 203 PLLPKTFAPNSRIYTTLMKGYMN----EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK----AGSMDRARQVL 274 (583)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~ 274 (583)
.-+..++..+...|.. .+++++|++.|++..+. .+...+..+...|.. .++.++|...|
T Consensus 144 -------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 144 -------QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp -------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 2356677788888887 78999999999998775 257778888888887 88999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007970 275 AEMTRIGVPANRITYNILLKGYCQ----QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL----IDDSAGALTFFN 346 (583)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~ 346 (583)
+...+.+ +...+..+...|.. .+++++|..+|++..+. .+...+..+...|.. .+++++|+..|+
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 9998875 56777788888886 78999999999998752 456677777777777 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 007970 347 EMRARGIAPTKISYTTLMKAFALS-----SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG---LVEEAKRIIER 418 (583)
Q Consensus 347 ~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~ 418 (583)
+..+.| +...+..+...+... +++++|...|++..+. .+...+..+...|...| ++++|+++|++
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 988765 556777777777776 8999999999998873 35667788888888766 78999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh---
Q 007970 419 MKENGFYPNVATYGSLANGISL----ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR--- 491 (583)
Q Consensus 419 ~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 491 (583)
..+.| +...+..+...|.. .+++++|+.+|++..+. .+...+..|..+|.+
T Consensus 357 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------------------~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 357 AAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-------------------GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHHHTSS
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-------------------CCHHHHHHHHHHHHcCCC
Confidence 98864 67788888888888 78999999999998864 246677888888888
Q ss_pred -hhhHHHHHHHHHHHHHcCC
Q 007970 492 -AAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 492 -~g~~~~A~~~~~~~~~~~~ 510 (583)
.+++++|.+.+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 7999999999999987553
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=5.6e-16 Score=156.38 Aligned_cols=351 Identities=15% Similarity=0.034 Sum_probs=295.4
Q ss_pred chHHHHHHHHHHHh----cCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHh----cCCcchHHHH
Q 007970 9 HVKAWSTVVSRLAA----SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN----LGKPKKFLQL 80 (583)
Q Consensus 9 ~~~~~~~li~~~~~----~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 80 (583)
++..+..+...|.. .++ +++|+..|++..+. .++.++..|...|.. .+++++|+++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~--~~~A~~~~~~a~~~--------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKD--LTQAMDWFRRAAEQ--------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCC--HHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 55666666677766 566 99999999998762 467788899999998 9999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHc----CCChHHHHHHHH
Q 007970 81 FDQMHEFGAKPDVLTYNVMIKLCAR----ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG----FGDLEIAETIVQ 152 (583)
Q Consensus 81 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 152 (583)
|+...+.| +...+..|...|.. .+++++|...|++..+.| ++..+..|..+|.. .+++++|.+.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999865 66777778888888 789999999999999876 56778888888887 789999999998
Q ss_pred HHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCC
Q 007970 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN----EGR 228 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 228 (583)
...+ ..+..++..+...|.. .++
T Consensus 176 ~a~~-----------------------------------------------------~~~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 176 KAAE-----------------------------------------------------QGNVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp HHHH-----------------------------------------------------TTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHH-----------------------------------------------------CCCHHHHHHHHHHHhcCCCCCcC
Confidence 8876 2467788888899988 899
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 007970 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK----AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----QL 300 (583)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 300 (583)
.++|.++|++..+. .+...+..+...+.. .+++++|...|+...+.+ +...+..+..+|.. .+
T Consensus 203 ~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 203 DAISAQWYRKSATS------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 99999999998875 256677888888876 789999999999999875 56677778888888 89
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---C
Q 007970 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILI-----DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS---Q 372 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~ 372 (583)
++++|..+|++..+. .+...+..+...|... +++++|+..|++..+.| +...+..+...+...| +
T Consensus 274 d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp CHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence 999999999999753 3667777888888877 89999999999999875 4567777777777756 7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKP 444 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~ 444 (583)
+++|..+|++..+. .+...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++
T Consensus 347 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 89999999999873 467888999999998 899999999999999875 57788888888887 8999
Q ss_pred hHHHHHHHHHHHH
Q 007970 445 GEALLLWKEIKER 457 (583)
Q Consensus 445 ~~a~~~~~~~~~~ 457 (583)
++|..+|+++.+.
T Consensus 420 ~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 420 VQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999987
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.5e-18 Score=163.21 Aligned_cols=285 Identities=8% Similarity=-0.024 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 007970 92 DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171 (583)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 171 (583)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++.+....
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------- 86 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY------------- 86 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------------
Confidence 33444455555555566666666666655553 3344455555555555566666666655554421
Q ss_pred cccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcccCCCCCC
Q 007970 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG-RVSDTVRMLGAMRRQEDNASHPD 250 (583)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 250 (583)
+.+..+|..+...+...| ++++|.+.|+++... .+.+
T Consensus 87 --------------------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~ 124 (330)
T 3hym_B 87 --------------------------------------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL----EKTY 124 (330)
T ss_dssp --------------------------------------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----CTTC
T ss_pred --------------------------------------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCcc
Confidence 233445555556666666 566666666665543 2223
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 330 (583)
...|..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..+..
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~ 201 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGV 201 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 4455555666666666666666666655543 233444555666666666666666666666532 1334555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007970 331 GFILIDDSAGALTFFNEMRARG--------IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 402 (583)
.+...|++++|...++++.... .+.....+..+..++...|++++|...|+++.+. .+.+...+..+..+
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 279 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYI 279 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHH
Confidence 6666666666666666655421 1223456666666777777777777777766652 23455666677777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+.+.|++++|.+.++++.+.. +.+...+..+..++
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 777777777777777766542 23455556665555
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.5e-18 Score=161.81 Aligned_cols=296 Identities=11% Similarity=0.038 Sum_probs=249.4
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.+.++..+..++..+...|++++|+++|+.+.+... .+...+..++..+...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 455677788899999999999999999999988653 355667778888999999999999999999975 667889999
Q ss_pred HHHHHHcCC-ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 007970 134 LVAAYVGFG-DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212 (583)
Q Consensus 134 l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (583)
+...+...| ++++|...|+...... +.+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------------------------~~~ 124 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE---------------------------------------------------KTY 124 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC---------------------------------------------------TTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC---------------------------------------------------Ccc
Confidence 999999999 9999999999887631 345
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
..+|..+..++...|++++|++.++.+.+. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 199 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEV 199 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 778999999999999999999999999886 34456778889999999999999999999999875 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAK-------IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
...+...|++++|...++++.+... .+....++..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 278 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGY 278 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 9999999999999999998876321 13345789999999999999999999999998864 446788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHcCCHH
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY-CRMGLVE 410 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 410 (583)
++...|++++|...|+++.+ -.+.+...+..+..++ ...|+.+
T Consensus 279 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999987 3455778888888877 4555543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=5.8e-16 Score=157.96 Aligned_cols=410 Identities=10% Similarity=0.056 Sum_probs=292.0
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
|...|..++.. .+.|+ +++|..+|+++++. .|.+...|...+..+.+.|++++|..+|+.+.+..
T Consensus 12 ~~~~w~~l~~~-~~~~~--~~~a~~~~e~al~~------------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQP--IDKARKTYERLVAQ------------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp CHHHHHHHHHH-HHSSC--HHHHHHHHHHHHTT------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHH------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 56789988884 66777 99999999999874 56678899999999999999999999999998754
Q ss_pred CCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHHh-CCC-cchhHHHHHHHHHHc---------CCChHHHHHHHH
Q 007970 89 AKPDVLTYNVMIKLC-ARASRKHLLVF----VLERILEM-GIT-LCMTTFQSLVAAYVG---------FGDLEIAETIVQ 152 (583)
Q Consensus 89 ~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~ 152 (583)
|+...|...+... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|+
T Consensus 77 --p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 77 --LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 6777777777533 35677777665 66666553 433 345677777666544 567777777777
Q ss_pred HHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----------
Q 007970 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG---------- 222 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---------- 222 (583)
..... |.. .....|......
T Consensus 155 ~al~~-P~~-------------------------------------------------~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 155 RGCVN-PMI-------------------------------------------------NIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHTTS-CCT-------------------------------------------------THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHhc-hhh-------------------------------------------------hHHHHHHHHHHHHHhhchhHHH
Confidence 76652 110 001112111110
Q ss_pred -H--HhcCChhHHHHHHHHHH------hcccCCCCCC--------HHHHHHHHHHHHHc----CCh----HHHHHHHHHH
Q 007970 223 -Y--MNEGRVSDTVRMLGAMR------RQEDNASHPD--------HVTYTTVVSALVKA----GSM----DRARQVLAEM 277 (583)
Q Consensus 223 -~--~~~g~~~~A~~~~~~~~------~~~~~~~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~ 277 (583)
. .+.+++..|..++.... ......++|+ ...|...+...... ++. +.+..+|+++
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 0 13455677777666532 1100012333 24555555433322 232 4778899998
Q ss_pred HhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 278 TRIGVPANRITYNILLKGYCQ-------QLQID-------KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
+... +.+...|..++..+.+ .|+++ +|..+|++.++. -.+.+...|..++..+.+.|++++|..
T Consensus 265 l~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 265 LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 8763 5678889888888876 68987 899999999741 124468889999999999999999999
Q ss_pred HHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 007970 344 FFNEMRARGIAPT-K-ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG-YCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 344 ~~~~m~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~ 420 (583)
+|+++.+. .|+ . ..|..++..+.+.|+.++|.++|++..+.. +.+...|...+.. +...|++++|..+|++..
T Consensus 343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 99999985 454 2 578888888889999999999999998742 2233333332222 346899999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHHH
Q 007970 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRKA 498 (583)
Q Consensus 421 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 498 (583)
+. .+.+...|..++..+...|+.++|..+|+++.... ...|+ ..+|...+......|+.+.+
T Consensus 419 ~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~---------------~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 419 KK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---------------SLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC---------------CSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc---------------CCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 75 23468889999999999999999999999998752 22443 45888888888889999999
Q ss_pred HHHHHHHHH
Q 007970 499 LEIVACMEE 507 (583)
Q Consensus 499 ~~~~~~~~~ 507 (583)
..+.+.+.+
T Consensus 483 ~~~~~r~~~ 491 (530)
T 2ooe_A 483 LKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=6.4e-18 Score=164.15 Aligned_cols=305 Identities=14% Similarity=-0.005 Sum_probs=231.6
Q ss_pred ccCCCCCCCcHH-HHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH
Q 007970 175 SENEGDDDDDDE-VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253 (583)
Q Consensus 175 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (583)
+...|++++|.. .|++.+.... .....+...+..+...+.+.|++++|+..|+++.+. .+.+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~ 100 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEE----------ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEA 100 (368)
T ss_dssp -----------CHHHHCCCCCCS----------SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCC----------CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHH
Confidence 334577777877 7776652110 000113456788999999999999999999999986 4557889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH------
Q 007970 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI------ 327 (583)
Q Consensus 254 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------ 327 (583)
+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...++++..... .+...+..
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP--AYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTGGGCC-------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHhh
Confidence 9999999999999999999999999875 56788999999999999999999999999976432 12222211
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007970 328 ---------LIDGFILIDDSAGALTFFNEMRARGIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397 (583)
Q Consensus 328 ---------li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (583)
.+..+...|++++|+..|+++....... +..++..+...+...|++++|...|+++.+ ..+.+..++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~ 255 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWN 255 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHH
Confidence 1333348899999999999998863221 578899999999999999999999999987 3456788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
.+..++.+.|++++|++.|+++.+.. +.+..++..+..+|...|++++|+..|+++.+......... ......
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~ 328 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR------GEGGAM 328 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------------CCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc------ccccch
Confidence 99999999999999999999998762 45678999999999999999999999999988642100000 000011
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 478 DEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 478 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
...++..+..+|...|++++|..+++..
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 2578999999999999999999988743
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=4.4e-18 Score=165.29 Aligned_cols=237 Identities=12% Similarity=-0.001 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH--
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN-- 290 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 290 (583)
..++..+..++...|++++|++.|+.+... .+.+..++..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 172 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPA 172 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 444444444444445555555544444443 22234444444444444555555555554444432 11111111
Q ss_pred -------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007970 291 -------------ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357 (583)
Q Consensus 291 -------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 357 (583)
..+..+...|++++|...|+++.+.....++..++..+...+...|++++|+..|+++.... +.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 01233337889999999999887754333357888889999999999999999999988763 4467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CC
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY----------PN 427 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----------p~ 427 (583)
..+..+...+...|++++|...|+++.+ ..+.+..++..+..+|.+.|++++|.+.|+++.+.... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 8888999999999999999999999877 34567888999999999999999999999998764211 11
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+|..+..+|...|++++|..++++..+.
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 678999999999999999999988765543
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.2e-17 Score=160.22 Aligned_cols=280 Identities=14% Similarity=-0.022 Sum_probs=221.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+...+..+...+.+.|++++|++.|+++.+. .+.+..+|..+...+...|++++|...|+.+.+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 4556889999999999999999999999986 45578899999999999999999999999999875 567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEP--------DVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTT 362 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ 362 (583)
+..+|...|++++|...|+++.+.....+ ....+..+...+...|++++|+.+|+++...... ++..++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999999976421000 1223345577889999999999999999886422 16889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 442 (583)
+...+...|++++|...|+++.+ ..+.+..+|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..+|...|
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 99999999999999999999987 345678899999999999999999999999999862 345889999999999999
Q ss_pred CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 443 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
++++|+..|+++.+......... .......+..++..+..++...|+.+.+.++.+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQ-----QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCc-----ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999988642100000 0000011357889999999999999998887765
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=5.3e-15 Score=150.84 Aligned_cols=396 Identities=10% Similarity=0.044 Sum_probs=278.7
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.|-+..+|..++.. .+.|++++|..+|+.+.+..+ .+...|..++..+.+.|+++.|..+|++++... |+...|..
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 45588899999984 789999999999999998642 467789999999999999999999999999874 57777777
Q ss_pred HHHHH-HcCCChHHHHH----HHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCC
Q 007970 134 LVAAY-VGFGDLEIAET----IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208 (583)
Q Consensus 134 l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 208 (583)
.+... ...|+.+.|.+ +|+..... -|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~-------------------------------------------------~g 115 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDK-------------------------------------------------IG 115 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHH-------------------------------------------------TT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHH-------------------------------------------------CC
Confidence 77533 45677777766 33333221 01
Q ss_pred C-CCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH-------------HHcC
Q 007970 209 F-APNSRIYTTLMKGYMN---------EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL-------------VKAG 265 (583)
Q Consensus 209 ~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g 265 (583)
. +++...|...+..... .|+++.|.++|++.... +..+....|....... .+.+
T Consensus 116 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~ 192 (530)
T 2ooe_A 116 MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSR 192 (530)
T ss_dssp TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Confidence 1 2456777777776654 78899999999999873 1222233443322211 1234
Q ss_pred ChHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCC
Q 007970 266 SMDRARQVLAEMT------RIG---VPAN--------RITYNILLKGYCQQ----LQI----DKAKELLREMADDAKIEP 320 (583)
Q Consensus 266 ~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~ 320 (583)
+++.|..++..+. +.. ++|+ ...|...+...... ++. ..+..+|++++... +.
T Consensus 193 ~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~ 270 (530)
T 2ooe_A 193 DYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CC
Confidence 5677777776532 221 2443 24555555433322 222 47778898887642 45
Q ss_pred CHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007970 321 DVVSYNILIDGFIL-------IDDSA-------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 321 ~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 386 (583)
+...|..++..+.. .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 67888888887775 78887 89999999986323446888899999999999999999999999873
Q ss_pred CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHHhhhhhcc
Q 007970 387 PRVKVDI-VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPGEALLLWKEIKERCEVKKEG 464 (583)
Q Consensus 387 ~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~ 464 (583)
.+.+. ..|..++..+.+.|++++|.++|++..+.. +.+...+...+.. +...|++++|..+|+++.+..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~------ 421 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY------ 421 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH------
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC------
Confidence 22233 589999999999999999999999998752 2233333333222 346899999999999999872
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhhhhh
Q 007970 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG-IPPN--KTKYKKIYVEMHSRM 528 (583)
Q Consensus 465 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~~~~~~l~~~ 528 (583)
+.+...+..++..+.+.|+.++|..+|++....+ ..|+ ...|... +......
T Consensus 422 -----------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~-~~~e~~~ 476 (530)
T 2ooe_A 422 -----------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF-LAFESNI 476 (530)
T ss_dssp -----------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH-HHHHHHS
T ss_pred -----------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH-HHHHHHc
Confidence 3346889999999999999999999999998753 2332 2245443 4444443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=6.5e-17 Score=156.84 Aligned_cols=280 Identities=12% Similarity=0.039 Sum_probs=208.4
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHH
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 135 (583)
.+...+..+...+.+.|++++|+.+|+.+.+... .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3455688888888999999999999999887653 367788888899999999999999999988875 55688888899
Q ss_pred HHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH
Q 007970 136 AAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215 (583)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (583)
.+|...|++++|...|+.+....++........ ......
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----------------------------------------~~~~~~ 179 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK-----------------------------------------KGSPGL 179 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------------------------
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhh-----------------------------------------ccchHH
Confidence 999999999999999998887766654322111 122345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (583)
+..+...+...|++++|++.|+++.... ...++..++..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGAT 256 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHS--CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 6677788888888999999998888752 111257788888888888899999999998888764 5567888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHH
Q 007970 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-----------PTKISYTTLM 364 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------p~~~~~~~l~ 364 (583)
|...|++++|+..|+++++.. +.+..++..+..+|...|++++|...|+++.+.... .+...+..+.
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 999999999999998887642 345778888888888999999999998887664211 1356788888
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 007970 365 KAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~ 383 (583)
.++...|+.+.+..+...-
T Consensus 335 ~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHcCcHHHHHHHHHhh
Confidence 8899999999888877653
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=2.2e-16 Score=150.37 Aligned_cols=278 Identities=10% Similarity=-0.065 Sum_probs=223.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+...+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|++++|...++.+.+.. +.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 3456778889999999999999999999886 44578889999999999999999999999999874 567888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL--------------ID-GFILIDDSAGALTFFNEMRARGIAPT 356 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~ 356 (583)
+...|...|++++|...++++.+... .+...+..+ .. .+...|++++|...++++.... +.+
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence 99999999999999999999976432 122222222 22 3778899999999999998864 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
...+..+...+...|++++|...++++.+ ..+.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 88899999999999999999999999987 345678899999999999999999999999998763 446888999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
.+...|++++|++.++++.+......... .......+..++..+..++.+.|++++|..++++.
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPT-----GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC----------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCcccccc-----ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999988631000000 00000003578899999999999999999998765
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=9.4e-16 Score=154.29 Aligned_cols=393 Identities=11% Similarity=0.013 Sum_probs=229.1
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC----
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF-----G--AKP-DVLTYNVMIKLCARASRKHLLVFVLERILEMG---- 123 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---- 123 (583)
.....||.|..++...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34678999999999999999999999987652 1 122 35689999999999999999999998877531
Q ss_pred ---CCcchhHHHHHHHHHHc--CCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCC
Q 007970 124 ---ITLCMTTFQSLVAAYVG--FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198 (583)
Q Consensus 124 ---~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (583)
......++..+..++.. .+++++|+..|++..+..|+...+...+..........++.++|+..+++.+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~----- 203 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR----- 203 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-----
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----
Confidence 11234566666555554 45789999999999887666555554444433333445555666666665541
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007970 199 SSEPPLLPKTFAPNSRIYTTLMKGYMN----EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274 (583)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 274 (583)
-.+.+..++..+...+.. .+++++|.+.+++.... .+.+...+..+...+...|++++|...+
T Consensus 204 ---------l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 204 ---------LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp ---------HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 112334444444433333 34555666666665553 3334555666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007970 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354 (583)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 354 (583)
+.+.+.. |.+..++..+..+|...+....+... .. ........+.++.|...++...... +
T Consensus 271 ~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~-----------~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 271 KKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE-----------NG------MYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH-----------HH------HHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 6666543 33444455444444321110000000 00 0000111233567888888887753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH----HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV----AWNMLVE-GYCRMGLVEEAKRIIERMKENGFYPNVA 429 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 429 (583)
.+...+..+...+...|++++|...|++..+. .++.. .+..+.. .+...|++++|+..|.+..+. .|+..
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~ 406 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSR 406 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH
Confidence 45677888889999999999999999998763 22222 2233322 345678999999999999874 56543
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
..... ...+.+++++..+. .| +..+|..+..+|...|++++|++.|++..+.
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~------------------~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSK------------------NGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHH------------------CC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHH---------HHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33222 23344555665554 44 4578999999999999999999999999864
Q ss_pred C-CCCCHHHH
Q 007970 509 G-IPPNKTKY 517 (583)
Q Consensus 509 ~-~~p~~~~~ 517 (583)
+ ..|+..+|
T Consensus 460 ~~~~p~a~~~ 469 (472)
T 4g1t_A 460 GSLIPSASSW 469 (472)
T ss_dssp ----------
T ss_pred CCCCCcHhhc
Confidence 3 34544433
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=2.3e-16 Score=146.75 Aligned_cols=277 Identities=10% Similarity=0.042 Sum_probs=218.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH--VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
++-....|++..|+..++.... ..|+. .....+..+|...|+++.|+..++. .-+|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc
Confidence 4556678999999999887654 33443 4556778999999999999986654 23667788899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 377 (583)
..++.++|++.+++++...-.+.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999876322244667777788899999999999999987 467888999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHH-H--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 378 KVFDEMLRDPRVKVDIV-A--WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 378 ~~~~~~~~~~~~~~~~~-~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
+.|+++.+. .|+.. . ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++
T Consensus 151 ~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999873 24422 1 122334445568999999999999987 4668889999999999999999999999999
Q ss_pred HHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhccc
Q 007970 455 KERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRK-ALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 532 (583)
.+. .|+ ..++..++.++...|+.++ +.++++++.+ +.|+..... ++..+
T Consensus 227 l~~------------------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~----d~~~~----- 277 (291)
T 3mkr_A 227 LDK------------------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIK----EYRAK----- 277 (291)
T ss_dssp HHH------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHH----HHHHH-----
T ss_pred HHh------------------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHH----HHHHH-----
Confidence 987 554 5789999999999999976 6789999875 467665432 33333
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 007970 533 HASQARQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~a~~~~~ 556 (583)
.+.++++..-+.
T Consensus 278 ------------~~~fd~~~~~~~ 289 (291)
T 3mkr_A 278 ------------ENDFDRLVLQYA 289 (291)
T ss_dssp ------------HHHHHHHHHHHS
T ss_pred ------------HHHHHHHHHHcC
Confidence 378888877663
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3.3e-17 Score=155.34 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=112.2
Q ss_pred hcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 22 ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101 (583)
Q Consensus 22 ~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 101 (583)
+.|+ .++|...++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++.
T Consensus 15 ~~~~--ld~A~~fae~~~~-----------------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~ 69 (449)
T 1b89_A 15 HIGN--LDRAYEFAERCNE-----------------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC--HHHHHHHHHhCCC-----------------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHH
Confidence 3455 7888888888732 348999999999999999999999653 57779999999
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCC
Q 007970 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181 (583)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (583)
.+...|++++|+..++...+. .+++.+.+.|+.+|.+.|+++++.++++
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------------- 118 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------------- 118 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-----------------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------------
Confidence 999999999999977777664 4567888999999999999998877652
Q ss_pred CCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 007970 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261 (583)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (583)
.|+..+|+.+...|...|++++|...|..+ ..|..++.++
T Consensus 119 ----------------------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L 158 (449)
T 1b89_A 119 ----------------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTL 158 (449)
T ss_dssp ----------------------------CC----------------CTTTHHHHHHHT------------TCHHHHHHHH
T ss_pred ----------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHH
Confidence 255567778888888888888888887755 2477788888
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|.+++|
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHHHH
Confidence 8888888888887776 256777888888888888888865554332 2333344577778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV------DIVAWNMLVEGYCRMGLVEEAKR 414 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 414 (583)
+.+++...... +-....|+.+.-.+++- ++++..+.++.-...-.++| +...|..++..|...++++.|..
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 88887776553 44556666666555542 23333333332222223333 34567777778888888887765
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=2.8e-14 Score=151.03 Aligned_cols=380 Identities=14% Similarity=0.146 Sum_probs=215.8
Q ss_pred HHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCH
Q 007970 14 STVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93 (583)
Q Consensus 14 ~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 93 (583)
...+.+|...|. +.+|+.+++++.-.... +..+....+.++....+. +..+..++.+..... +
T Consensus 989 s~~vKaf~~agl--p~EaieLLEKivl~~s~---------fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d- 1051 (1630)
T 1xi4_A 989 SVTVKAFMTADL--PNELIELLEKIVLDNSV---------FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D- 1051 (1630)
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHcCCCc---------ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c-
Confidence 444455555555 66666666666532100 112334444455555444 334444444444321 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 007970 94 LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173 (583)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (583)
..-+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.+++.. ...+...+.
T Consensus 1052 --~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn~--------p~vWsqLAK 1113 (1630)
T 1xi4_A 1052 --APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCNE--------PAVWSQLAK 1113 (1630)
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcCC--------HHHHHHHHH
Confidence 2224455556666666666666541 11111122221 45566666666654432 111223344
Q ss_pred cccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH
Q 007970 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253 (583)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (583)
.+...|++++|++.|.+. .+...|..++.++.+.|++++|.+.|...++. .+++..
T Consensus 1114 Aql~~G~~kEAIdsYiKA-------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-----~~e~~I 1169 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA-------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-----ARESYV 1169 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cccccc
Confidence 555666666666666552 45566666677777777777777777666553 122222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 007970 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333 (583)
Q Consensus 254 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 333 (583)
.+.++.+|++.++++....+. + .++...+..+...|...|++++|..+|..+ ..|..+..+|.
T Consensus 1170 dt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLV 1232 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHH
Confidence 233666666666666433222 1 234455556666777777777777777654 25666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007970 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 334 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 413 (583)
+.|++++|++.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+
T Consensus 1233 kLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred HhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777654 245667777777777777777766654432 35566678888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC------CHHHHHHH
Q 007970 414 RIIERMKENGFYPNVATYGSLANGISLA--RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP------DEELLDAL 485 (583)
Q Consensus 414 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~l 485 (583)
++++..+... .-....|..+...+++. ++..+++++|..-. .++| +...|.-+
T Consensus 1301 ~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri------------------ni~k~~r~~e~~~lW~el 1361 (1630)
T 1xi4_A 1301 TMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV------------------NIPKVLRAAEQAHLWAEL 1361 (1630)
T ss_pred HHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------------------ccchHhHHHHHHHHHHHH
Confidence 8887776542 22344565566555543 33444444444222 2233 34778899
Q ss_pred HHHHHhhhhHHHHHH
Q 007970 486 ADICVRAAFFRKALE 500 (583)
Q Consensus 486 ~~~~~~~g~~~~A~~ 500 (583)
+..|.+.|+++.|..
T Consensus 1362 v~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1362 VFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcccHHHHHH
Confidence 999999999999983
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.3e-15 Score=153.31 Aligned_cols=373 Identities=10% Similarity=-0.010 Sum_probs=228.1
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF- 87 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 87 (583)
.+..||.+...+...|+ +++|+..|++..+........ ...+....+|+.+..+|...|++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~--~~eAl~~~~kAl~~~~~~~~~---~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQ--NEAALECLRKAEELIQQEHAD---QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CCHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSGG---GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhcCcc---ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 46689999999999999 999999999987754332111 112335779999999999999999999999987653
Q ss_pred ----CC-C-CCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHhCCCcchhHHHHHHHH---HHcCCChHHHHHHHHHHHh
Q 007970 88 ----GA-K-PDVLTYNVMIKLCARA--SRKHLLVFVLERILEMGITLCMTTFQSLVAA---YVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 88 ----~~-~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~ 156 (583)
+. . ....++..+..++... +++++|++.|++..+.. |.++..+..+..+ +...++.++|++.++...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 10 1 1245566665555554 57999999999999875 4456666665555 4556888899999998887
Q ss_pred hhHHHHHHHHhhh-hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007970 157 GRRDVCKIIRELD-LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235 (583)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (583)
..|+.......+. .....+...++.++|...+++.+. ..+.+..++..+...|...|++++|.+.
T Consensus 204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--------------KAPGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH--------------HCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------------hCccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 7666555443332 223455677889999999998762 2356788999999999999999999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 236 LGAMRRQEDNASHPDHVTYTTVVSALVKA-------------------GSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
+.+..+. .+.+..++..+...|... +..+.|...++...+.. +.+...+..+...|
T Consensus 270 ~~~al~~----~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 270 LKKALEY----IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred HHHHHHh----CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence 9999885 344566676666555332 22445556666555543 33445556666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHH----HHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVS----YNILID-GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
...|++++|+..|++.++. .|+... +..+.. .....|++++|+..|++..+. .|+.......
T Consensus 345 ~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~-------- 411 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM-------- 411 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH--------
T ss_pred HHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH--------
Confidence 6667777777766666542 122211 111111 223456666666666666653 3332221111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
...+..+++...+ ..+.+..+|..+..+|...|++++|++.|++.++.
T Consensus 412 -~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 412 -KDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp -HHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred -HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1223334444333 12344556666666666666666666666666654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=6.4e-16 Score=147.17 Aligned_cols=98 Identities=9% Similarity=0.010 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|-.....+...|+ +++|+..|+++.+. .+.+..++..+..++...|++++|...|+.+.+...
T Consensus 21 ~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 86 (327)
T 3cv0_A 21 HENPMEEGLSMLKLAN--LAEAALAFEAVCQA------------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86 (327)
T ss_dssp SSCHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcc--HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 3445555566666666 77777777766653 334566666666677777777777777776666432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
.+..++..+...+...|++++|...++++.+.
T Consensus 87 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 87 -KDIAVHAALAVSHTNEHNANAALASLRAWLLS 118 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24556666666666677777777777666665
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=4.7e-14 Score=149.33 Aligned_cols=381 Identities=13% Similarity=0.130 Sum_probs=287.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 007970 61 YNAVLNACANLGKPKKFLQLFDQMHEFGA--KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138 (583)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (583)
-...+..|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..+..+++.... ...+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHH
Confidence 35678888899999999999999984321 12334455567666666 5566666666654221 33477888
Q ss_pred HcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 007970 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218 (583)
Q Consensus 139 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (583)
...|.+++|..+|++..........+ +...+++++|.++.+++ .+..+|..
T Consensus 1060 i~lglyEEAf~IYkKa~~~~~A~~VL----------ie~i~nldrAiE~Aerv-------------------n~p~vWsq 1110 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVNTSAVQVL----------IEHIGNLDRAYEFAERC-------------------NEPAVWSQ 1110 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHH----------HHHHhhHHHHHHHHHhc-------------------CCHHHHHH
Confidence 89999999999999875321111111 12456778888888875 35789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (583)
+..++.+.|++++|++.|.+. .|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 999999999999999999554 367788999999999999999999999888764 344445569999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 378 (583)
.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+
T Consensus 1180 l~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 99998644432 2 356677888999999999999999999985 379999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.+.+.. +..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++....
T Consensus 1243 aarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~-- 1308 (1630)
T 1xi4_A 1243 GARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG-- 1308 (1630)
T ss_pred HHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--
Confidence 998872 5689999999999999999998876643 34667788999999999999999999988874
Q ss_pred hhhhccccCCCCCCCCCCCCH-HHHHHHHHHHH--hhhhHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHhhhhhh
Q 007970 459 EVKKEGVNADSDLPPPLKPDE-ELLDALADICV--RAAFFRKALEIVACMEEHGIPP------NKTKYKKIYVEMHSRMF 529 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~~~~~~l~~~~ 529 (583)
+.|.+ ..|.-|..+|. +-++..++.++|..-. +++| +...|..+ +-+|.+.
T Consensus 1309 ----------------LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~el-v~LY~~~- 1368 (1630)
T 1xi4_A 1309 ----------------LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAEL-VFLYDKY- 1368 (1630)
T ss_pred ----------------cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHH-HHHHHhc-
Confidence 35554 56655655554 5567777777776543 3333 34567776 7777776
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHh
Q 007970 530 TSKHASQARQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~a~~~~~ 556 (583)
|+++.|...+-
T Consensus 1369 ----------------~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1369 ----------------EEYDNAIITMM 1379 (1630)
T ss_pred ----------------ccHHHHHHHHH
Confidence 88888885543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.9e-15 Score=140.52 Aligned_cols=249 Identities=13% Similarity=0.087 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV-PANRITYNIL 292 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l 292 (583)
.....+.++|...|++++|+..++. . .+|+..++..+...+...++.++|++.++.+...+. |.+...+..+
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~---~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l 107 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKP---S----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA 107 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCT---T----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcc---c----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 3456678999999999999976643 1 456778889999999999999999999999988764 4467778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHh
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY---TTLMKAFAL 369 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~ 369 (583)
..++...|++++|++.+++ +.+...+..++..+.+.|++++|...|+.+.+.. |+.... ..++..+..
T Consensus 108 a~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhC
Confidence 8999999999999999976 4678899999999999999999999999998863 553211 223344445
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH-HH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE-AL 448 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-a~ 448 (583)
.|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.+.. +-+..++..++..+...|+.++ +.
T Consensus 179 ~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp TTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 68999999999999883 56789999999999999999999999999998863 4478899999999999999976 57
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 007970 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502 (583)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 502 (583)
++++++.+. .|+.... .+...+.+.|+++..-|
T Consensus 256 ~~~~~~~~~------------------~P~~~~~---~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 256 RYLSQLKDA------------------HRSHPFI---KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHH------------------CTTCHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------------------CCCChHH---HHHHHHHHHHHHHHHHc
Confidence 899999876 7775432 34456667777766543
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.2e-16 Score=149.78 Aligned_cols=291 Identities=11% Similarity=0.090 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (583)
+.+.+.|+. +.|++++|.++++++.. | .+|..|+.++.+.|++++|++.|.+ .+|..+|..++..
T Consensus 6 ~~a~~~ll~---~~~~ld~A~~fae~~~~----~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ 70 (449)
T 1b89_A 6 TSAVQVLIE---HIGNLDRAYEFAERCNE----P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH---HccCHHHHHHHHHhCCC----h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHH
Confidence 334444444 67889999999999843 3 4899999999999999999999965 2577799999999
Q ss_pred HHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHH
Q 007970 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217 (583)
Q Consensus 138 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (583)
+...|++++|.+.++...+. .+++.+.+
T Consensus 71 ae~~g~~EeAi~yl~~ark~----------------------------------------------------~~~~~i~~ 98 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARKK----------------------------------------------------ARESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCCHHHHHHHHHHHHHh----------------------------------------------------CccchhHH
Confidence 99999999999977766541 35567888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~ 159 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 159 (449)
T ss_dssp ----------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHH
Confidence 99999999999999887763 366679999999999999999999999976 36899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 377 (583)
+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++.....++..|.+.|++++|.
T Consensus 160 ~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 160 HLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp TTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 999999999999988 2789999999999999999999655443 2334455667889999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCHhHHHH
Q 007970 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYP------NVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p------~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.+++.... .-+.....|+-|..+|++- ++++..+.++..... +++| +...|..+...|.+.++++.|..
T Consensus 228 ~lLe~aL~--le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 228 TMLEAALG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTT--STTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhC--CcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 99999986 3366788888888888876 455555555544321 2222 34568888889999999998876
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.6e-17 Score=166.65 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
-..|||++|++|++.|+ .++|..+|+.|.+... .|+.||+.+||+||.+|++.|++++|.++|++|.+.|
T Consensus 126 ~~~TynaLIdglcK~G~--leeA~~Lf~eM~~m~~--------kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQ--LPLAHHLLVVHHGQRQ--------KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHSHH--------HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhh--------cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 45699999999999999 9999999998875211 3689999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHhCCCcchhHHHHHHHHHHc
Q 007970 89 AKPDVLTYNVMIKLCARASRK-HLLVFVLERILEMGITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (583)
+.||..||++||.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+
T Consensus 196 ~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 999999999999999999985 7899999999999999999999988865544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.9e-14 Score=129.64 Aligned_cols=224 Identities=11% Similarity=0.064 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCC----HHHHH
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK-IEPD----VVSYN 326 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~ 326 (583)
..+..+...+...|++++|..+++.+.+.. .+...+..+..+|...|++++|...++++.+... ..++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666665554 4555566666666666666666666665544211 0111 35666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 007970 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406 (583)
Q Consensus 327 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (583)
.+...+...|++++|...|+++... .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 6666777777777777777776664 3332 235556777788888877776 2344566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHH
Q 007970 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDAL 485 (583)
Q Consensus 407 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l 485 (583)
|++++|++.++++.+.. +.+..++..+..++...|++++|+..++++.+. .|+ ...+..+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~l 213 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------------------DPNFVRAYIRK 213 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------------CHHHHHHHHHH
Confidence 88888888888887652 346777888888888888888888888888775 343 5777788
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 007970 486 ADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 486 ~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..++.+.|++++|...+++..+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888888764
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=159.81 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007970 322 VVSYNILIDGFILIDDSAGALTFFNEMRA---RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398 (583)
Q Consensus 322 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 398 (583)
..+|+++|.+|++.|+.++|.++|.+|.+ .|+.||..||+.||.+|++.|++++|.++|++|.+. |+.||..|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 34666666666666666666666655543 356666666666666666666666666666666553 66666666666
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 399 LVEGYCRMGL-VEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 399 li~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 6666666665 35566666666666666666666666543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7e-14 Score=127.95 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCC----H
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV--PAN----R 286 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~ 286 (583)
...+..+...+...|++++|++.|+.+.+. . .+...+..+..++...|++++|...++.+.+... .++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL----H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 567889999999999999999999999987 3 6788999999999999999999999999887531 112 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.++..+..+|...|++++|...|+++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 78889999999999999999999999875 3553 34566788999999999998863 3356778888999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 446 (583)
+...|++++|...|+++.+ ..+.+..++..+..+|.+.|++++|++.++++.+.. +.+...+..+..++...|++++
T Consensus 149 ~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999987 345678899999999999999999999999998863 4468889999999999999999
Q ss_pred HHHHHHHHHHH
Q 007970 447 ALLLWKEIKER 457 (583)
Q Consensus 447 a~~~~~~~~~~ 457 (583)
|...++++.+.
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.6e-14 Score=126.85 Aligned_cols=199 Identities=15% Similarity=-0.000 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007970 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362 (583)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 362 (583)
|++...+..+...+.+.|++++|...|++.++. -+.+...+..+..++...|++++|+..|++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 345555666666666666666666666666542 13455566666666666666666666666666542 334556666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 363 LMKAFALS-----------SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431 (583)
Q Consensus 363 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 431 (583)
+..++... |++++|...|++..+ ..+.+...+..+..++...|++++|++.|++..+.. .+...+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 66666666 888888888888876 334567778888888888888888888888888765 677888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+..++...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQ------------------APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888888876 454 4777788888888888888888887653
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=4.3e-14 Score=125.44 Aligned_cols=211 Identities=15% Similarity=0.051 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
|++...+..+...+.+.|++++|+..|++..+. .+.+...+..+...+.+.|++++|+..++...+.. |.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 355566666667777777777777777766654 33445666666666667777777777776666653 3445556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
..+..++...+ . . . .. .+...|++++|+..|++..+.. +-+...+..+..++..
T Consensus 77 ~~lg~~~~~~~-----------~-~-~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 77 MVLSEAYVALY-----------R-Q-A---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHHHHHH-----------H-T-C---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-----------h-h-h---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 66666555550 0 0 0 00 0001155555555555555542 2234555555555666
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.|++++|...|++..+. . .+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+.
T Consensus 131 ~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 131 LGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp TTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------
T ss_pred cCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 66666666666665552 1 455555666666666666666666666665541 2345555556666666666666666
Q ss_pred HHHHHH
Q 007970 450 LWKEIK 455 (583)
Q Consensus 450 ~~~~~~ 455 (583)
.+++..
T Consensus 207 ~~~~~~ 212 (217)
T 2pl2_A 207 AAALEH 212 (217)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 665544
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2.7e-13 Score=125.15 Aligned_cols=245 Identities=13% Similarity=0.034 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHH
Q 007970 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD--VVSYNILID 330 (583)
Q Consensus 253 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~ 330 (583)
.+......+...|++++|+..++.+.+.. +.+...+..+..+|...|++++|+..++++++. ...++ ..+|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 44556667777888888888888877754 344557777777888888888888888888652 21222 345778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
.+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888763 445678889999999999999999999998873 4556778888873444556999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC------HHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD------EEL 481 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~ 481 (583)
+|++.|+++.+.. +.+...+..+..++...|+ +++|+..++++.+.... .|+ ..+
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~ 223 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP---------------GGAKYKDELIEA 223 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG---------------GGGGGHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc---------------ccccchHHHHHH
Confidence 9999999998862 3457788888888888888 88899999999886421 233 257
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
+..+...|.+.|++++|.+.+++..+ +.|+.......
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~ 260 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 88889999999999999999999986 45766554433
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=1.4e-13 Score=136.53 Aligned_cols=380 Identities=13% Similarity=0.099 Sum_probs=245.0
Q ss_pred HHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHCCCCCC
Q 007970 16 VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKP---KKFLQLFDQMHEFGAKPD 92 (583)
Q Consensus 16 li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~ 92 (583)
+...+.+.|+ +++|+.+|++..+. .++.++..+...|...|+. ++|+.+|+...+. +
T Consensus 9 la~~~~~~g~--~~~A~~~~~~aa~~--------------g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~ 68 (452)
T 3e4b_A 9 LANEALKRGD--TVTAQQNYQQLAEL--------------GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----S 68 (452)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHH--------------TCCTGGGTCC------------------------------
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----C
Confidence 4555666777 99999999988763 1334455666777777887 8999999888863 5
Q ss_pred HHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHh
Q 007970 93 VLTYNVMIKLCARAS-----RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 93 ~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
...+..|...+...+ ++++|...|++..+.|. +..+..|...|...+...++.+.++.+.....
T Consensus 69 ~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-------- 137 (452)
T 3e4b_A 69 PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-------- 137 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--------
Confidence 556666666555554 77889999999988763 33666777777766655444443333332100
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCC
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 247 (583)
..+...+..+...|...+.++++......+.+.- .
T Consensus 138 ------------------------------------------~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a---~ 172 (452)
T 3e4b_A 138 ------------------------------------------AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA---L 172 (452)
T ss_dssp ------------------------------------------HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH---T
T ss_pred ------------------------------------------CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH---H
Confidence 1234567778888888886666655544333321 2
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCC
Q 007970 248 HPDHVTYTTVVSALVKAG---SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ----LQIDKAKELLREMADDAKIEP 320 (583)
Q Consensus 248 ~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~ 320 (583)
..++..+..+...|...| +.++|++.|+...+.| +++...+..|..+|... +++++|..+|++.. +.
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g 246 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PG 246 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GG
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CC
Confidence 223337888888999999 8999999999999988 56666667777788665 79999999999986 23
Q ss_pred CHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCCCC
Q 007970 321 DVVSYNILIDG-F--ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS-----QPKLANKVFDEMLRDPRVKVD 392 (583)
Q Consensus 321 ~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~ 392 (583)
+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|..+|++.. +-+
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~ 317 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GRE 317 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTC
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCC
Confidence 55666666665 4 56899999999999999876 6677777777776 55 9999999998876 346
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHHhhhhhcc
Q 007970 393 IVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKPGEALLLWKEIKERCEVKKEG 464 (583)
Q Consensus 393 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 464 (583)
...+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..++.+|..+|+...+..
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g------ 388 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD------ 388 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC------
Confidence 7778888877776 3499999999999998763 3345556666653 458999999999887652
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 465 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
.++.......+......++..+|.++.++..
T Consensus 389 -----------~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 389 -----------TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp -----------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222222222233334456666777666654
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=8.1e-13 Score=120.42 Aligned_cols=208 Identities=12% Similarity=0.037 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...+..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHH
Confidence 567889999999999999999999999886 44567889999999999999999999999998765 4577888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEP-DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
..+|...|++++|.++++++.. .+..| +...+..+...+...|++++|...|+++.... +.+...+..+...+...|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC
Confidence 9999999999999999999976 22234 56778888889999999999999999988863 446788888999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 431 (583)
++++|...++.+.+ ..+.+...+..+...+...|++++|.++++++.+. .|+...+
T Consensus 190 ~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 190 EYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp CHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred CHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 99999999999887 34567788888999999999999999999999875 3544433
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.6e-14 Score=131.32 Aligned_cols=250 Identities=10% Similarity=-0.049 Sum_probs=194.4
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
..|++++|++.|+.+.+......+.+..++..+...+...|++++|...|+.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 357899999999999875210111246788899999999999999999999999875 5578899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007970 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 384 (583)
|...|+++++.. +.+...+..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++...
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998753 346788999999999999999999999999886 4554445555556677899999999998877
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhh
Q 007970 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY--P-NVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461 (583)
Q Consensus 385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 461 (583)
.. .+++...+. ++..+...++.++|.+.+.+..+.... | +..++..+...|...|++++|+..|+++.+.
T Consensus 172 ~~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 244 (275)
T 1xnf_A 172 EK--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---- 244 (275)
T ss_dssp HH--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred hc--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Confidence 63 344444444 667778888999999999988653211 0 1567888999999999999999999999864
Q ss_pred hccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 007970 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502 (583)
Q Consensus 462 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 502 (583)
.|+. +.....++...|++++|++.+
T Consensus 245 --------------~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --------------NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --------------CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred --------------Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 5643 223355778889999998876
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=8.6e-13 Score=117.80 Aligned_cols=213 Identities=12% Similarity=0.047 Sum_probs=175.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
+.+..++..+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|...++.+.+.. +.+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 79 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEIN 79 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHH
Confidence 345778899999999999999999999998886 44567888999999999999999999999998764 5577888
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 290 NILLKGYCQQ-LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 290 ~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
..+...+... |++++|...++++.+....+.+...+..+..++...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHH
Confidence 8999999999 99999999999997621222336778888889999999999999999988763 445788888899999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 369 LSSQPKLANKVFDEMLRDPRVK-VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 432 (583)
..|++++|..+++.+.+. .+ .+...+..+...+...|+.++|..+++.+.+. .|+.....
T Consensus 159 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHTCHHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 999999999999998772 34 56777888888889999999999999998764 35444433
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=1.1e-12 Score=119.61 Aligned_cols=201 Identities=12% Similarity=0.027 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 330 (583)
...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|.+.++++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 5678888889999999999999999998864 5578889999999999999999999999997653 346788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 409 (583)
.+...|++++|..+++++...+..| +...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999998733344 4667888888999999999999999999873 355688899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 410 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++|.++++++.+. .+.+...+..+...+...|++++|.++++++.+.
T Consensus 192 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999875 3457778888899999999999999999999886
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=1.2e-12 Score=125.78 Aligned_cols=230 Identities=12% Similarity=0.068 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGK-PKKFLQLFDQMHEFG 88 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~ 88 (583)
...|..+...+...|+ +++|+..|+++++. .|-+..+|+.+..++...|+ +++|+..|+++.+..
T Consensus 97 ~~a~~~lg~~~~~~g~--~~~Al~~~~~al~l------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDER--SERAFKLTRDAIEL------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHTCC--CHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCC--hHHHHHHHHHHHHh------------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 3456666666666666 77777777777663 33456667777777777775 777777777776654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhh
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 168 (583)
. -+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+++....
T Consensus 163 P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---------- 230 (382)
T 2h6f_A 163 P-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---------- 230 (382)
T ss_dssp T-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------
T ss_pred C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------
Confidence 3 255666666666777777777777777777664 4566666666667777777777777766666532
Q ss_pred hhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCChhHH-----HHHHHHHHhc
Q 007970 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN-EGRVSDT-----VRMLGAMRRQ 242 (583)
Q Consensus 169 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~ 242 (583)
+.+..+|+.+..++.+ .|..++| ++.|++....
T Consensus 231 -----------------------------------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 231 -----------------------------------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp -----------------------------------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 3456666666666666 4444555 3666666654
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHH
Q 007970 243 EDNASHPDHVTYTTVVSALVKAG--SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL---------QIDKAKELLRE 311 (583)
Q Consensus 243 ~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~ 311 (583)
.+-+...|..+...+...| ++++|++.+..+ +. .+.+...+..+..+|.+.| .+++|+++|++
T Consensus 270 ----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 270 ----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp ----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 2334556666666666655 466666666665 22 2445566666666666653 24666666666
Q ss_pred H
Q 007970 312 M 312 (583)
Q Consensus 312 ~ 312 (583)
+
T Consensus 344 l 344 (382)
T 2h6f_A 344 L 344 (382)
T ss_dssp H
T ss_pred H
Confidence 6
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=2e-12 Score=115.38 Aligned_cols=209 Identities=14% Similarity=0.067 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4455556666666666666666666665432 2345566666666667777777777777666542 335666677777
Q ss_pred HHHhc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 366 AFALS-SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444 (583)
Q Consensus 366 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 444 (583)
.+... |++++|...++.+.+....+.+...+..+..++...|++++|++.++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777776621122335667777778888888888888888877652 33567777778888888888
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCC-CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLK-PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+ ..|+....
T Consensus 164 ~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-----------------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHH-----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHHhC-----------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHH
Confidence 88888888877652 3 3556666677777888888888888888764 24554443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=1.5e-12 Score=125.03 Aligned_cols=247 Identities=10% Similarity=0.038 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC-hHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 007970 94 LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD-LEIAETIVQAMREGRRDVCKIIRELDLED 172 (583)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (583)
..|..+...+...|++++|+..++++++.. +-+..+|..+..++...|+ +++|+..|++.....
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 345555556666666666666666666654 4455566666666666664 666666666665421
Q ss_pred ccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHH
Q 007970 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252 (583)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 252 (583)
+.+..+|..+..++...|++++|+..|+++... .+-+..
T Consensus 163 -------------------------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l----dP~~~~ 201 (382)
T 2h6f_A 163 -------------------------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ----DAKNYH 201 (382)
T ss_dssp -------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHH
T ss_pred -------------------------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CccCHH
Confidence 344556666666666666666666666666654 333456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCCHHHHH
Q 007970 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ-QLQIDKA-----KELLREMADDAKIEPDVVSYN 326 (583)
Q Consensus 253 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~ 326 (583)
.|..+..++...|++++|+..++.+++.. +.+...|+.+..++.. .|..++| +..|++.+... +.+...|.
T Consensus 202 a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~ 278 (382)
T 2h6f_A 202 AWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWN 278 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 66666666666666666666666666554 3455566666666666 4443555 35555555432 23445566
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-hcCCCCCCCHH
Q 007970 327 ILIDGFILID--DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS---------QPKLANKVFDEM-LRDPRVKVDIV 394 (583)
Q Consensus 327 ~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~ 394 (583)
.+...+...| ++++|++.+.++ +. .+.+...+..+..++.+.| ..++|.++|+++ .+ ..+....
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~ 354 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKE 354 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHH
Confidence 6655565555 456666666555 22 2334455555555555542 135666666665 33 2233334
Q ss_pred HHHHHHHHH
Q 007970 395 AWNMLVEGY 403 (583)
Q Consensus 395 ~~~~li~~~ 403 (583)
.|..+...+
T Consensus 355 ~w~~~~~~l 363 (382)
T 2h6f_A 355 YWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=1.2e-11 Score=114.13 Aligned_cols=225 Identities=12% Similarity=0.009 Sum_probs=197.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCC
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK----AGSMDRARQVLAEMTRIGVPAN 285 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 285 (583)
+-+..++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|+...+.+ +
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C
Confidence 346788899999999999999999999998873 245778889999999 999999999999999876 7
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 007970 286 RITYNILLKGYCQ----QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL----IDDSAGALTFFNEMRARGIAPTK 357 (583)
Q Consensus 286 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~ 357 (583)
...+..+..+|.. .+++++|+..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 7888899999999 99999999999999773 378889999999999 999999999999999876 56
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 358 ISYTTLMKAFAL----SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVA 429 (583)
Q Consensus 358 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~ 429 (583)
..+..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +..
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 777888888887 89999999999999874 356788889999999 999999999999999864 367
Q ss_pred HHHHHHHHHHh----cCCHhHHHHHHHHHHHH
Q 007970 430 TYGSLANGISL----ARKPGEALLLWKEIKER 457 (583)
Q Consensus 430 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 457 (583)
.+..+...|.. .+++++|++.|++..+.
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 78888888988 99999999999999886
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=2.7e-13 Score=134.54 Aligned_cols=348 Identities=12% Similarity=0.026 Sum_probs=228.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK---HLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
.+...+.+.|++++|+++|+...+.| +...+..|...|...|+. ++|...|++..+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998865 334455566666777777 8999999888754 5566667777555
Q ss_pred cCC-----ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 140 GFG-----DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 140 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
..+ ++++|...|+..... -+..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-----------------------------------------------------g~~~ 107 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-----------------------------------------------------GEGN 107 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-----------------------------------------------------TCSS
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-----------------------------------------------------CCHH
Confidence 555 677888888877652 1222
Q ss_pred HHHHHHHHHHhcCChhHH---HHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDT---VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
++..|...|...+..+++ .+.+...... .+...+..+...|...+.++++......+.+.-...++..+..
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~ 181 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVE 181 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHH
Confidence 667777777776655444 4444444433 1345667777888887755544444332222111223347888
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 292 LLKGYCQQL---QIDKAKELLREMADDAKIEPDVVSYNILIDGFILI----DDSAGALTFFNEMRARGIAPTKISYTTLM 364 (583)
Q Consensus 292 l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 364 (583)
|..+|...| +.++|+..|++..+. + .++...+..+...|... +++++|+..|++.. .| +...+..+.
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg 255 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLA 255 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHH
Confidence 889999999 999999999999763 3 45666656777777655 79999999999987 43 455666666
Q ss_pred HH-H--HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 365 KA-F--ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG-----LVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 365 ~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
.. + ...+++++|..+|++..+. + +...+..|...|. .| ++++|+++|++.. .| +......|..
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~ 326 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQ 326 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHH
Confidence 65 4 5689999999999999873 3 6778888888887 55 9999999999987 43 6677777877
Q ss_pred HHHh----cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHc
Q 007970 437 GISL----ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR----AAFFRKALEIVACMEEH 508 (583)
Q Consensus 437 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 508 (583)
.|.. ..++++|+.+|++..+.. +......|..+|.. ..+.++|..+++...+.
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g-------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNG-------------------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTT-------------------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhC-------------------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 7766 349999999999987641 23345566666654 45899999999999876
Q ss_pred CC
Q 007970 509 GI 510 (583)
Q Consensus 509 ~~ 510 (583)
|.
T Consensus 388 g~ 389 (452)
T 3e4b_A 388 DT 389 (452)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=3.7e-13 Score=124.26 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN--RITYNI 291 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ 291 (583)
..+......+...|++++|++.|+.+.+. .+.+...+..+...+...|++++|+..++.+.+....+. ...+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 45667788999999999999999999885 334456888899999999999999999999998432222 334888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
+..+|...|++++|...|++..+.. +.+..++..+...|...|++++|+..|++..+. .+.+...+..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 345678999999999999999999999998876 2445677777773444556
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhc
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL---VEEAKRIIERMKENG-FYPN------VATYGSLANGISLA 441 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~ 441 (583)
++++|...|+++.+ ..+.+...+..+..++...|+ +++|...++++.+.. -.|+ ..++..+...|...
T Consensus 157 ~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 157 EYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 99999999999987 345567888888999999888 888999999887531 1233 25778888899999
Q ss_pred CCHhHHHHHHHHHHHH
Q 007970 442 RKPGEALLLWKEIKER 457 (583)
Q Consensus 442 g~~~~a~~~~~~~~~~ 457 (583)
|++++|++.|+++.+.
T Consensus 235 ~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 235 RDKVKADAAWKNILAL 250 (272)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999987
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=3e-13 Score=132.89 Aligned_cols=282 Identities=13% Similarity=0.020 Sum_probs=215.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----C
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD----HVTYTTVVSALVKAGSMDRARQVLAEMTRI----G 281 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~ 281 (583)
......+......+...|++++|...|+++.... +.+ ...+..+...+...|++++|...++.+... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 4567788889999999999999999999998862 223 357888889999999999999999987643 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCC-------------------
Q 007970 282 VP-ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDD------------------- 337 (583)
Q Consensus 282 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~------------------- 337 (583)
.. ....++..+...|...|++++|...+++..+.....++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 11 12557788889999999999999999887653211122 4478888889999999
Q ss_pred -HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcC
Q 007970 338 -SAGALTFFNEMRAR----GIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMG 407 (583)
Q Consensus 338 -~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g 407 (583)
+++|...+++.... +..| ...++..+...+...|++++|...+++..+.....++ ..++..+..+|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999999886542 1111 1346778888999999999999999988652111122 347888999999999
Q ss_pred CHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHH
Q 007970 408 LVEEAKRIIERMKENGF-YPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EEL 481 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 481 (583)
++++|...+++..+... .++ ..++..+...|...|++++|+..++++.+..... +-.+. ..+
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~ 309 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------NDRIGEGRA 309 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc------------CCcHHHHHH
Confidence 99999999999874210 112 4577888889999999999999999988764320 00111 467
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+..+..+|...|++++|.+.+++..+
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999999999999864
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=9.4e-12 Score=114.86 Aligned_cols=224 Identities=13% Similarity=0.024 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----QLQIDKAKELLREMADDAKIEPDVVSY 325 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 325 (583)
+..++..+...+...|++++|...|+...+. .+...+..+...|.. .+++++|...|++..+. .+...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 5677888889999999999999999999984 356788889999999 99999999999999764 378889
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007970 326 NILIDGFIL----IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL----SSQPKLANKVFDEMLRDPRVKVDIVAWN 397 (583)
Q Consensus 326 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (583)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHH
Confidence 999999999 999999999999999875 77888899999998 99999999999999874 2 677888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 398 MLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKPGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 398 ~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..+++..+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------------ 215 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL------------ 215 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC------------
Confidence 88889988 999999999999999864 56788888899999 99999999999999875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHcC
Q 007970 470 DLPPPLKPDEELLDALADICVR----AAFFRKALEIVACMEEHG 509 (583)
Q Consensus 470 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 509 (583)
.| ...+..+..+|.+ .+++++|.+.+++..+.+
T Consensus 216 ------~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 ------EN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp ------TC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ------CC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 33 6677888899998 999999999999998754
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=3.3e-13 Score=122.24 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp -------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 334455555555555555555555555543 23334445555555555555555555555554432 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 372 (583)
...|. ..|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 98 a~~~~------------------------------------~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 98 GNVYV------------------------------------VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHH------------------------------------HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC
T ss_pred HHHHH------------------------------------HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 44444 4455555555544444432 2234444555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 452 (583)
+++|...++++.+ ..+.+...+..+...+.+.|++++|++.++++.+.. +.+..++..+..++...|++++|...++
T Consensus 141 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 141 PKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5555555555544 123345555566666666666666666666665541 2345556666666666666666666666
Q ss_pred HHHHH
Q 007970 453 EIKER 457 (583)
Q Consensus 453 ~~~~~ 457 (583)
++.+.
T Consensus 218 ~~~~~ 222 (243)
T 2q7f_A 218 KAIDI 222 (243)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 66654
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=4.8e-13 Score=121.12 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
...+|..+...+...|++++|..+|+.+.+... .+...+..+...+...|++++|+..++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 455566666666666666666666666665432 245556666666666677777777666666654 445566666666
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (583)
++...|++++|...++.+.... +.+..++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~---------------------------------------------------~~~~~~~ 128 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG---------------------------------------------------MENGDLF 128 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT---------------------------------------------------CCSHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC---------------------------------------------------CCCHHHH
Confidence 6667777777777766665421 2345566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 66666677777777777777766654 33455666666666777777777777777666543 34556666677777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 007970 297 CQQLQIDKAKELLREMADD 315 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~ 315 (583)
...|++++|...++++.+.
T Consensus 204 ~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 204 AYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTTCTTHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHcc
Confidence 7777777777777766553
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.1e-13 Score=126.15 Aligned_cols=253 Identities=9% Similarity=-0.018 Sum_probs=194.3
Q ss_pred cccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH
Q 007970 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251 (583)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 251 (583)
+......|++++|+..|++++.... ...+.+..++..+..++...|++++|.+.|+++... .+.+.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~ 77 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRA----------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMP 77 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSC----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCH
T ss_pred eeccCccchHHHHHHHHHHHHhccc----------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcH
Confidence 3344566788888888888773210 001234778999999999999999999999999986 44568
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 331 (583)
..|..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+. .|+.......+..
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHH
Confidence 899999999999999999999999999864 456889999999999999999999999999875 3444444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHc
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-----IVAWNMLVEGYCRM 406 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~ 406 (583)
+...|++++|...+++..... +++...+ .++..+...++.++|...+....+. .|. ..++..+..+|.+.
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 154 AEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHc
Confidence 577799999999998887753 4444444 4677778888899999999988762 221 57888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 407 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
|++++|...|+++.+. .|+. +.....++...|++++|++.+
T Consensus 229 g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 229 GDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999975 4532 233355677888899888776
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=6.3e-13 Score=126.75 Aligned_cols=279 Identities=13% Similarity=0.014 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-C
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD----HVTYTTVVSALVKAGSMDRARQVLAEMTRI----GV-P 283 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~ 283 (583)
...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++...+. +. +
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 3456667788999999999999999998862 223 467888899999999999999999987643 21 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCC--------------------HH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDD--------------------SA 339 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~--------------------~~ 339 (583)
....++..+...|...|++++|...+++..+.....++ ..++..+...+...|+ ++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 23567788899999999999999999887653221223 3477888888999999 99
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHH
Q 007970 340 GALTFFNEMRAR----GIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 340 ~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 410 (583)
+|...+++.... +..+ ....+..+...+...|++++|...+++..+.....++ ..++..+...+...|+++
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 999998886542 1111 2346777888899999999999999988652111112 347888899999999999
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHH
Q 007970 411 EAKRIIERMKENGF-YPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDA 484 (583)
Q Consensus 411 ~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 484 (583)
+|.+.+++..+... .++ ..++..+...+...|++++|...++++.+..... +-.+ ...++..
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~ 308 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------KDRIGEGRACWS 308 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHH
Confidence 99999998874210 112 4577788888999999999999999988763210 0011 1357788
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 007970 485 LADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+..+|.+.|++++|...+++..+
T Consensus 309 la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 309 LGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 89999999999999999999875
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=9e-13 Score=129.80 Aligned_cols=279 Identities=15% Similarity=0.016 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhC----C-CC
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH----VTYTTVVSALVKAGSMDRARQVLAEMTRI----G-VP 283 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~ 283 (583)
...+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...++++.+. + .+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 4456677889999999999999999998862 2233 47888889999999999999999988753 1 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCC-----------------HHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAK----IEPDVVSYNILIDGFILIDD-----------------SAGAL 342 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~-----------------~~~a~ 342 (583)
....++..+...|...|++++|...+++...... ......++..+...|...|+ +++|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 3456778889999999999999999988765311 11234578888889999999 99999
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 007970 343 TFFNEMRAR----GIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 343 ~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 413 (583)
..+++.... +..+ ....+..+...+...|++++|...+++..+......+ ..++..+..+|...|++++|.
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 998886542 1111 2346778888999999999999999988652111112 237888999999999999999
Q ss_pred HHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHH
Q 007970 414 RIIERMKENG--FY---PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALAD 487 (583)
Q Consensus 414 ~~~~~~~~~g--~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~ 487 (583)
+.+++..+.. .. ....++..+...+...|++++|+..++++.+..... +-.+ ...++..+..
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~ 351 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL------------GDRIGEARACWSLGN 351 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChHHHHHHHHHHHH
Confidence 9999887531 11 114677888889999999999999999988764221 0011 1357888899
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 007970 488 ICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~ 507 (583)
+|.+.|++++|.+.+++..+
T Consensus 352 ~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 352 AHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999875
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=6.8e-13 Score=130.34 Aligned_cols=233 Identities=13% Similarity=0.028 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHcCC--------------------hHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH--PDHVTYTTVVSALVKAGS--------------------MDRA 270 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~--------------------~~~a 270 (583)
..++..+...|...|++++|...+.+.......... ....++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334555666666666666666666655443100000 012355556666666666 6666
Q ss_pred HHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 007970 271 RQVLAEMTRI----GV-PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 271 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a 341 (583)
...++...+. +. +....++..+...|...|++++|...+++..+.....++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666655432 11 112345667777788888888888888777543211222 23677777888888888888
Q ss_pred HHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 007970 342 LTFFNEMRARGI-APT----KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 342 ~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 412 (583)
...+++...... .++ ..++..+...+...|++++|...++...+......+ ..++..+..+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887754311 011 456777888888999999999998887652111111 55778888999999999999
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHh
Q 007970 413 KRIIERMKEN----GFYP-NVATYGSLANGISLARKPG 445 (583)
Q Consensus 413 ~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~ 445 (583)
.+.+++..+. +..+ ...++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9999987642 2111 2345566666666666553
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=5e-13 Score=131.63 Aligned_cols=281 Identities=16% Similarity=0.100 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCH----HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT----AAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
..+..+...+...|+ +++|+..|+++.+. .+.+. .++..+...|...|++++|+..|++..+
T Consensus 49 ~~l~~~g~~~~~~g~--~~~A~~~~~~al~~------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 49 LELALEGERLCNAGD--CRAGVAFFQAAIQA------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc--HHHHHHHHHHHHHh------------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556667777777 88888888888874 12232 4777888888888888888888888765
Q ss_pred C----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----CCcchhHHHHHHHHHHcCCC-------------
Q 007970 87 F----GA-KPDVLTYNVMIKLCARASRKHLLVFVLERILEMG-----ITLCMTTFQSLVAAYVGFGD------------- 143 (583)
Q Consensus 87 ~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~------------- 143 (583)
. +. .....++..+...+...|++++|...+++..+.. .+....++..+..+|...|+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 194 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence 3 11 1234567777788888888888888888776541 12234567777888888888
Q ss_pred ----hHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 144 ----LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 144 ----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
+++|...+++....... .. ..+....++..+
T Consensus 195 a~~~~~~A~~~~~~al~~~~~------------------------------~~---------------~~~~~~~~~~~l 229 (411)
T 4a1s_A 195 VKEALTRAVEFYQENLKLMRD------------------------------LG---------------DRGAQGRACGNL 229 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------------------------HT---------------CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH------------------------------cC---------------CHHHHHHHHHHH
Confidence 67777766655442111 00 001224577888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-----CCHHHHHHH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHP--DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP-----ANRITYNIL 292 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 292 (583)
...|...|++++|++.+++..........+ ....+..+...+...|++++|...++...+.... ....++..+
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999998877642100000 1225667777777888888888887776643100 113455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
..+|...|++++|...+++.+.......+ ..++..+...|...|++++|...|++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66777777777777777666432110111 23455555555666666666666655544
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=9.9e-13 Score=125.36 Aligned_cols=285 Identities=13% Similarity=0.023 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 007970 96 YNVMIKLCARASRKHLLVFVLERILEMGITLC----MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171 (583)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 171 (583)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++..........
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------- 77 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--------- 77 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---------
Confidence 4444556667777777777777777664 222 34566777777778888888877776654211100
Q ss_pred cccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC--
Q 007970 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-- 249 (583)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 249 (583)
..+....++..+...+...|++++|.+.+.+..........+
T Consensus 78 ------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 121 (338)
T 3ro2_A 78 ------------------------------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121 (338)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------------------ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence 001224566777788888888888888887766542100000
Q ss_pred CHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHH
Q 007970 250 DHVTYTTVVSALVKAGS--------------------MDRARQVLAEMTRI----GV-PANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
...++..+...+...|+ +++|...++..... +. +....++..+...+...|++++
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 12356666677777777 66666666554421 10 0112244445555555555555
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007970 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 384 (583)
|...+++..+.....++.. ....++..+...+...|++++|...+++..
T Consensus 202 A~~~~~~a~~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGDKA-------------------------------AERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChH-------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555432100001100 001234444445555555555555555443
Q ss_pred cCC---CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007970 385 RDP---RVK-VDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYP-NVATYGSLANGISLARKPGEALLLWKEIK 455 (583)
Q Consensus 385 ~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (583)
+.. +.+ ....++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 210 000 01345555666666666666666666665432 1000 12355566666667777777777777666
Q ss_pred HH
Q 007970 456 ER 457 (583)
Q Consensus 456 ~~ 457 (583)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=3.3e-10 Score=116.20 Aligned_cols=430 Identities=9% Similarity=0.023 Sum_probs=289.1
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCC---cchHHHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGK---PKKFLQLFDQ 83 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 83 (583)
+-|..+|..+|..+.+.+. ++.+..+|+.++.. .|.+...|..-+..-.+.++ ++.+..+|+.
T Consensus 63 p~d~~~W~~yi~~~~~~~~--~~~aR~vyEraL~~------------fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQ--WKQVYETFDKLHDR------------FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHH------------CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3478899999999998887 99999999999986 67788999999999999999 9999999999
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHH-hCC-Cc-chhHHHHHHHHHHc---------CC
Q 007970 84 MHEFG-AKPDVLTYNVMIKLCARASRK--------HLLVFVLERILE-MGI-TL-CMTTFQSLVAAYVG---------FG 142 (583)
Q Consensus 84 m~~~~-~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g 142 (583)
..... ..|++..|...+....+.++. +.+.++|+..+. .|. .+ +...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98854 137888898888776665553 334477877664 355 34 45677777765443 23
Q ss_pred ChHHHHHHHHHHHhhhH-HHH-------HHHHhhhhcc---ccccCCCCCCCcHHHHHhhcC--CCCC---CCCCCCCCC
Q 007970 143 DLEIAETIVQAMREGRR-DVC-------KIIRELDLED---YSSENEGDDDDDDEVFEKLLP--NSIN---PSSEPPLLP 206 (583)
Q Consensus 143 ~~~~A~~~~~~~~~~~~-~~~-------~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~~~~~~~ 206 (583)
+++.+..+|+....... ... .+........ ........++.|...+..+.. ..+. +....+...
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 46778888887765311 011 1111100000 000000111222333332110 0110 000000011
Q ss_pred CCCCC-------CHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHH-
Q 007970 207 KTFAP-------NSRIYTTLMKGYMNEG-------RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR- 271 (583)
Q Consensus 207 ~~~~~-------~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~- 271 (583)
..+++ ....|...+..--..+ ..+.+..+|+++... .+-....|...+..+...|+.+.|.
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH----VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 11111 1356777766544332 123456778888875 5667889999999899999999997
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCCC------------HHHHHHHHHH
Q 007970 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA--------KIEPD------------VVSYNILIDG 331 (583)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~------------~~~~~~li~~ 331 (583)
++|+..... +|.+...+..++...-+.|+++.|..+|+.++... ...|+ ...|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999874 46677778888999999999999999999987531 00131 2367777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS-SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
..+.|..+.|..+|..+.+....+....|...+..-.+. ++.+.|..+|+..++. .+.+...|...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHH
Confidence 778899999999999998861122334444433333344 4589999999999884 5567778889999888999999
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYP--NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.|..+|++.......+ ....|...+..=...|+.+.+.++.+++.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999998763211 2356777777778899999999999999987
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=6.9e-11 Score=111.06 Aligned_cols=236 Identities=11% Similarity=0.035 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-------cCCh-------HH
Q 007970 212 NSRIYTTLMKGYMNE----GRV----SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-------AGSM-------DR 269 (583)
Q Consensus 212 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~ 269 (583)
+...|...+..-.+. ++. ++|..+|+++... .+.+...|..++..+.. .|++ ++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 82 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHH
Confidence 345677777665443 233 6888999999885 45567888888877753 5886 89
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VV-SYNILIDGFILIDDSAGALTFFNE 347 (583)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~ 347 (583)
|..+|+..++.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ .. .|..+...+.+.|++++|..+|++
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999998422456778999999999999999999999999863 343 33 899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC
Q 007970 348 MRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG-FY 425 (583)
Q Consensus 348 m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~ 425 (583)
..+.. +++...|........ ..|++++|..+|+...+. .+.+...|..++..+.+.|++++|..+|++..... +.
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 99864 344555554443322 369999999999999873 45578899999999999999999999999999863 35
Q ss_pred C--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 426 P--NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 426 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
| ....|..++......|+.++|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 4678888899999999999999999999987
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.5e-11 Score=105.93 Aligned_cols=165 Identities=12% Similarity=0.037 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007970 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400 (583)
Q Consensus 321 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 400 (583)
+...|..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...+..... ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 34455556666666666666666666655542 23455566666666666666666666666654 2334455566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-H
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-E 479 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 479 (583)
..+...++++.|.+.+.+..+. .+.+...+..+..++...|++++|++.|+++.+. .|+ .
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~ 141 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI------------------KPGFI 141 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh------------------cchhh
Confidence 6666666666666666666654 2334556666666666777777777777766655 333 4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.++..+..+|.+.|++++|++.+++..+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666777777777777777776654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.3e-11 Score=120.06 Aligned_cols=232 Identities=11% Similarity=0.021 Sum_probs=176.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-----HHHHH
Q 007970 257 VVSALVKAGSMDRARQVLAEMTRI----GVPA-NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-----VVSYN 326 (583)
Q Consensus 257 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~ 326 (583)
....+...|++++|...++...+. +.++ ...++..+..+|...|+++.|...+.+..+.....++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999864 2111 3467888999999999999999999988653222222 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCC-CCCHHHHH
Q 007970 327 ILIDGFILIDDSAGALTFFNEMRARGI-APT----KISYTTLMKAFALSSQPKLANKVFDEMLRD---PRV-KVDIVAWN 397 (583)
Q Consensus 327 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 397 (583)
.+...|...|++++|+..|++...... .++ ..++..+...|...|++++|...|++..+. .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998765311 112 246788889999999999999999988761 122 34467889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKEN----GFYPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADSD 470 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (583)
.+..+|.+.|++++|.+.+++..+. +-+.....+..+...+...|+ +++|+.++++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--------------- 333 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--------------- 333 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---------------
Confidence 9999999999999999999988753 111122335667777888898 777777776652
Q ss_pred CCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 471 LPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 471 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..|+ ...+..+..+|...|++++|...+++..+
T Consensus 334 ----~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 ----LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1333 36778899999999999999999999864
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1e-10 Score=109.81 Aligned_cols=237 Identities=8% Similarity=0.068 Sum_probs=146.3
Q ss_pred chHHHHHHHHHHHhcCC--CCh----hhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHh-------cCCc-
Q 007970 9 HVKAWSTVVSRLAASGD--DGP----VESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN-------LGKP- 74 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~--~~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~- 74 (583)
+...|...+..-.+... ++. .+|+..|++++.. .|.++..|..++..+.. .|++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~------------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~ 74 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMN 74 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH------------HTTCHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH------------cCCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 34578888876554311 112 6788899999885 46678899988888764 4775
Q ss_pred ------chHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchh-HHHHHHHHHHcCCChHH
Q 007970 75 ------KKFLQLFDQMHE-FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT-TFQSLVAAYVGFGDLEI 146 (583)
Q Consensus 75 ------~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 146 (583)
++|..+|+...+ ... -+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++
T Consensus 75 ~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 75 NAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHH
T ss_pred hcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHH
Confidence 777777777776 232 245567777777777777777777777777642 22233 66667777777777777
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-h
Q 007970 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM-N 225 (583)
Q Consensus 147 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~ 225 (583)
|..+|+...... +.+...|...+.... .
T Consensus 153 A~~~~~~a~~~~---------------------------------------------------p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 153 GRMIFKKAREDA---------------------------------------------------RTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHTST---------------------------------------------------TCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---------------------------------------------------CCCHHHHHHHHHHHHHH
Confidence 777776665421 122333333322221 2
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG-VPA--NRITYNILLKGYCQQLQI 302 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~ 302 (583)
.|++++|.++|+...+. .+.+...|..++..+.+.|++++|..+|+...... ++| ....|..++..+.+.|+.
T Consensus 182 ~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp SCCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred cCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 46666676666666654 23345566666666666666666666666666642 232 344556666666666666
Q ss_pred HHHHHHHHHHHh
Q 007970 303 DKAKELLREMAD 314 (583)
Q Consensus 303 ~~A~~~~~~~~~ 314 (583)
+.|..+++++.+
T Consensus 258 ~~a~~~~~~a~~ 269 (308)
T 2ond_A 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=8.3e-13 Score=124.49 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN----ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI----- 280 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 280 (583)
+.+..++..+...+...|++++|..+++++.+.... ........+..+...+...|++++|...++.+.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334566777777777888888888887777663100 01222445566666666667777776666665542
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 007970 281 -G-VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP-TK 357 (583)
Q Consensus 281 -~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~ 357 (583)
+ .+....++..+...|...|++++|...++++.+... ... .+..| ..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----------------------------~~~-~~~~~~~~ 153 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE-----------------------------KVL-GKDHPDVA 153 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-----------------------------HHH-CTTCHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-----------------------------Hhc-CCCChHHH
Confidence 1 111233444455555555555555555554433100 000 01111 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CC
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRD------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-------GF 424 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~ 424 (583)
..+..+...+...|++++|..+|+++.+. ...+....++..+..+|...|++++|.++++++.+. ..
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555566666666666666655441 011223445667777777777777777777777642 11
Q ss_pred CCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHH
Q 007970 425 YPNV-------ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFR 496 (583)
Q Consensus 425 ~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 496 (583)
.+.. ..+..+...+...+.+.++...++..... .|+. .++..+..+|.+.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~la~~~~~~g~~~ 295 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD------------------SPTVTTTLKNLGALYRRQGKFE 295 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------------------------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC------------------CchHHHHHHHHHHHHHHCCCHH
Confidence 1111 12222233344556666677777766643 4444 78888999999999999
Q ss_pred HHHHHHHHHHH
Q 007970 497 KALEIVACMEE 507 (583)
Q Consensus 497 ~A~~~~~~~~~ 507 (583)
+|.+++++..+
T Consensus 296 ~A~~~~~~al~ 306 (311)
T 3nf1_A 296 AAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=3.1e-11 Score=103.92 Aligned_cols=167 Identities=15% Similarity=0.071 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 364 (583)
++.+|..+...|...|++++|+..|++.++.. +.+..++..+..+|...|++++|+..+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 45566667777777777777777777766542 3355666667777777777777777777766652 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 444 (583)
..+...++++.|...+.+..+ ..+.+...+..+..+|.+.|++++|++.|++..+.. +.+..++..+..+|...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 667777777777777777665 334556677777777777777777777777777652 33566777777777777778
Q ss_pred hHHHHHHHHHHHH
Q 007970 445 GEALLLWKEIKER 457 (583)
Q Consensus 445 ~~a~~~~~~~~~~ 457 (583)
++|++.|+++++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 7887777777754
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=8e-12 Score=124.80 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI-DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 345 (583)
++++...++...... +.+...+..+..+|...|++ ++|+..|++.++.. +.+...|..+..+|...|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666666555432 34667777777777788888 88888887776642 334677777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc--------CC
Q 007970 346 NEMRARGIAPTKISYTTLMKAFALS---------SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM--------GL 408 (583)
Q Consensus 346 ~~m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~ 408 (583)
++..+. .|+...+..+...+... |++++|...|++..+ ..+.+...|..+..+|... |+
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 887775 46667777777778777 888899999988877 3455678888888888888 89
Q ss_pred HHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHH
Q 007970 409 VEEAKRIIERMKENGFY---PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDA 484 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~ 484 (583)
+++|++.|++..+.. + -+...+..+..+|...|++++|++.|+++.+. .|+ ...+..
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------------------~p~~~~a~~~ 297 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL------------------DPAWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHH
Confidence 999999999998752 2 37888999999999999999999999999886 555 477888
Q ss_pred HHHHHHhhhhHHHHHHHHHHH
Q 007970 485 LADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+..++...|++++|++.+.++
T Consensus 298 l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 889999999999998866543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=2.6e-11 Score=121.04 Aligned_cols=213 Identities=11% Similarity=0.062 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS-AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
.++++...++..... .+.+...+..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|...
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356777777776532 245788899999999999999 99999999998863 44688999999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCRM---------GLVEEAKRIIERMKENGFYPNVATYGSLANGISLA--------R 442 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------g 442 (583)
|++..+. .|+...+..+..+|... |++++|++.|++..+.. +.+...|..+..+|... |
T Consensus 160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 9999873 47788999999999999 99999999999999863 44688899999999988 9
Q ss_pred CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC----CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH-H
Q 007970 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP----DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK-Y 517 (583)
Q Consensus 443 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~ 517 (583)
++++|+..|+++.+. .| +...+..+..+|...|++++|.+.+++..+ +.|+... +
T Consensus 236 ~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~ 295 (474)
T 4abn_A 236 ISQQALSAYAQAEKV------------------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHHH------------------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred hHHHHHHHHHHHHHh------------------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 999999999999986 55 568999999999999999999999999986 3455443 3
Q ss_pred HHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 518 KKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 518 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
..+ ..++... |++++|++.+.++
T Consensus 296 ~~l-~~~~~~l-----------------g~~~eAi~~~~~~ 318 (474)
T 4abn_A 296 QRE-QQLLEFL-----------------SRLTSLLESKGKT 318 (474)
T ss_dssp HHH-HHHHHHH-----------------HHHHHHHHHTTTC
T ss_pred HHH-HHHHHHH-----------------HHHHHHHHHhccc
Confidence 333 5555555 8888888655444
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=4.9e-11 Score=116.06 Aligned_cols=239 Identities=7% Similarity=-0.050 Sum_probs=177.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--C----CCCHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNA-SHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--V----PANRIT 288 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~ 288 (583)
......+...|++++|++.|++........ ..+ ...++..+...+...|+++.|...+.+..+.- . +....+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 346677888999999999999987642110 111 24678888899999999999999999887531 1 112457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRAR----GI-APTKIS 359 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~ 359 (583)
++.+..+|...|++++|...|++.++.....++ ..++..+..+|...|++++|+..+++.... +. +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 788889999999999999999888653211222 247888899999999999999999998762 23 334667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDP---RVKVDIVAWNMLVEGYCRMGL---VEEAKRIIERMKENGFYPN-VATYG 432 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~ 432 (583)
+..+...+...|++++|...+++..+.. +.+.....+..+...+...|+ +++|+.++++. +..|+ ...+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 8888999999999999999999876521 112223345677888888898 77777777765 23333 34677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 433 SLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.+...|...|++++|...++++.+..
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 78889999999999999999998764
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=4.9e-09 Score=107.58 Aligned_cols=381 Identities=10% Similarity=0.044 Sum_probs=240.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHhC-CCcchh
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR---KHLLVFVLERILEMG-ITLCMT 129 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~ 129 (583)
.|-|..+|..++..+.+.+.++.+..+|+.+...- ..+...|...+..-.+.++ ++.+..+|++.+... .+|++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 46689999999999999999999999999998763 3466778888888788888 999999999988764 137888
Q ss_pred HHHHHHHHHHcCCCh----HHHH----HHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCC
Q 007970 130 TFQSLVAAYVGFGDL----EIAE----TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201 (583)
Q Consensus 130 ~~~~l~~~~~~~g~~----~~A~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (583)
.|..-+....+.++. +++. ++|+.....
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-------------------------------------------- 176 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-------------------------------------------- 176 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--------------------------------------------
Confidence 888777665555543 2333 333333220
Q ss_pred CCCCCCCC--CCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-------
Q 007970 202 PPLLPKTF--APNSRIYTTLMKGYM---------NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK------- 263 (583)
Q Consensus 202 ~~~~~~~~--~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------- 263 (583)
-|. ..+...|...+.... ..++++.+.++|..+... +...-..+|......-..
T Consensus 177 -----vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~ 248 (679)
T 4e6h_A 177 -----CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDVNQLTAR 248 (679)
T ss_dssp -----TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHHCTTTHH
T ss_pred -----hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhcCcchHH
Confidence 011 234556776666543 234567788888888753 111112233211111101
Q ss_pred ------cCChHHHHHHHHHHHh--CCC----CCC-------------------HHHHHHHHHHHHhcC-------CHHHH
Q 007970 264 ------AGSMDRARQVLAEMTR--IGV----PAN-------------------RITYNILLKGYCQQL-------QIDKA 305 (583)
Q Consensus 264 ------~g~~~~a~~~~~~~~~--~~~----~~~-------------------~~~~~~l~~~~~~~~-------~~~~A 305 (583)
..+++.|...+.++.. .++ +.. ...|...+..--..+ ..+.+
T Consensus 249 ~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 249 RHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 1223444555544321 111 110 134444444332222 12345
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007970 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL-TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384 (583)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 384 (583)
..+|++.+... +-....|-..+..+...|+.++|. .+|+..... ++.+...+...+......|+++.|.++|+++.
T Consensus 329 ~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 329 TYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56787777643 446677877777777888888886 999888874 45566667777888888899999999998887
Q ss_pred cCC---------CCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-C
Q 007970 385 RDP---------RVKV-----------DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYPNVATYGSLANGISLA-R 442 (583)
Q Consensus 385 ~~~---------~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~-g 442 (583)
... ..+. ....|...+....+.|..+.|..+|.++.+. +. +....|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCC
Confidence 520 0111 1346777888888888999999999998875 21 1223333333222333 4
Q ss_pred CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 443 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
+.+.|.++|+.+.+.+ +-+...+...+......|+.+.|..+|+.....
T Consensus 485 d~e~Ar~ife~~Lk~~-----------------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF-----------------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp CCHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHC-----------------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5889999999998873 334566677778788889999999999988753
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=4.4e-12 Score=119.44 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------C
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN----ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI------G 281 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 281 (583)
...++..+..+|...|++++|.+.+++....... .......++..+...+...|++++|...++.+.+. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888999999999999999999999875100 11233567888999999999999999999998864 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007970 282 V-PANRITYNILLKGYCQQLQIDKAKELLREMADD------AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351 (583)
Q Consensus 282 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 351 (583)
. +.....+..+...|...|++++|..+++++.+. ...+....++..+...|...|++++|...++++...
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 223455677778888888888888888877653 111122345666666777777777777777776653
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=1.1e-09 Score=106.14 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=174.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--C---C-CCHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH--PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--V---P-ANRI 287 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~---~-~~~~ 287 (583)
+......+...|++++|+..|.+.......... ....++..+...+...|+++.|...+++..+.. . . ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 344556678899999999999998765211010 124577888889999999999999998877531 1 1 1245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRA-----RGIAPTKI 358 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~ 358 (583)
+++.+..+|...|++++|...|++.++.....++ ..++..+..+|...|++++|+..+++... .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 6778889999999999999999887653211122 34678888899999999999999999876 32 33367
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPR---VKVDIVAWNMLVEGYCRMGL---VEEAKRIIERMKENGFYPN-VATY 431 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~ 431 (583)
++..+...+.+.|++++|...+++..+... .+.....+..+...+...++ +.+|+.++++. +..|+ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 788888999999999999999999876321 22224456666677777788 77777777662 22333 3456
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+...|...|++++|...|+++.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67888899999999999999998765
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=3.7e-10 Score=109.60 Aligned_cols=234 Identities=12% Similarity=0.006 Sum_probs=174.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----CHHH
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGV-PA----NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP-----DVVS 324 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~ 324 (583)
......+...|++++|...++++.+.-. .+ ...++..+..+|...|+++.|...+.+..+.....+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567789999999999999886421 12 245778889999999999999999988765322122 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRAR----GIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAW 396 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 396 (583)
+..+...|...|++++|+..|++.... +..+ ...++..+..++...|++++|...|++..+. .+.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 888899999999999999999987653 1111 1346778888999999999999999998761 0123336788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKENG----FYPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~g----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
..+..+|.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|+..+++..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-------------- 330 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-------------- 330 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--------------
Confidence 899999999999999999999988632 11123455666666777888 777777776531
Q ss_pred CCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 470 DLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 470 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..|+ ...+..+...|...|++++|...+++..+
T Consensus 331 -----~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 -----LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333 35677889999999999999999999854
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=2.2e-09 Score=103.97 Aligned_cols=213 Identities=9% Similarity=0.025 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccC-CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC----CH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN-ASH--P-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA----NR 286 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~ 286 (583)
++..+...+...|++++|.+.+++....... +.. | ....+..+...+...|++++|...+++........ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3556667777778888887777776553110 011 2 12344445556666666666666666655432110 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.++..+...+...|++++|...+++.............+... .....+..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 224 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN------------------------------ANKVRVIY 224 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH------------------------------HHHHHHHH
Confidence 334444555555555555555555443211000000000000 00011222
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVK--VDIVAWNMLVEGYCRMGLVEEAKRIIERMKE----NGFYPNV-ATYGSLANGIS 439 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~~-~~~~~l~~~~~ 439 (583)
+...|++++|...+.......... .....+..+...+...|++++|.+.+++... .|..++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 344555555555555544311000 0122345556666666777777666666542 2211222 24555566677
Q ss_pred hcCCHhHHHHHHHHHHHH
Q 007970 440 LARKPGEALLLWKEIKER 457 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~ 457 (583)
..|++++|...+++....
T Consensus 305 ~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 777777777777777665
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=9.2e-10 Score=106.59 Aligned_cols=278 Identities=11% Similarity=-0.027 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH----VTYTTVVSALVKAGSMDRARQVLAEMTRIGV-PAN---- 285 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~---- 285 (583)
........+...|++++|...+++..... ...+. ..+..+...+...|++++|...+++...... ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEEL---PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC---CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34455667788999999999999988752 11222 2456667788899999999999998775311 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDA---KIE--P-DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP---- 355 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---- 355 (583)
..++..+...+...|++++|...+++.+... +.. | ....+..+...+...|++++|...+++........
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 2335677888999999999999998876532 211 2 23456677888999999999999999987643221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---C
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-IVAWN----MLVEGYCRMGLVEEAKRIIERMKENGFYP---N 427 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~g~~p---~ 427 (583)
...++..+...+...|++++|...++........... ..... ..+..+...|++++|..++++.......+ .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 2346777888899999999999999987642111111 11111 23345779999999999999887542211 1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
...+..+...+...|++++|...++++....... +..++. .++..+..++...|++++|...+++..
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSL------------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------------cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3356677888999999999999999987753210 111222 366777889999999999999999885
Q ss_pred H
Q 007970 507 E 507 (583)
Q Consensus 507 ~ 507 (583)
.
T Consensus 321 ~ 321 (373)
T 1hz4_A 321 K 321 (373)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=6e-10 Score=99.51 Aligned_cols=205 Identities=13% Similarity=0.033 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 363 (583)
.++..+......+...|++++|...|++.++... .++...+..+..++...|++++|+..|++..... +.+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 3456666677777777777777777777765321 1555666667777777777777777777777652 2245566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHH
Q 007970 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDI-------VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA---TYGS 433 (583)
Q Consensus 364 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~ 433 (583)
..++...|++++|...|++..+. .+.+. ..|..+...+...|++++|++.|+++.+. .|+.. .+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 77777777777777777777652 23334 44666666677777777777777777642 44322 2333
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
+..+|... +..+++++.... ..+...+... .....+.+++|+..+++..+ +.|+
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~-----------------~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~--l~p~ 212 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLA-----------------SSNKEKYASE--KAKADAAFKKAVDYLGEAVT--LSPN 212 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGT-----------------TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHH-----HHHHHHHHHhcc-----------------cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh--cCCC
Confidence 33333322 223333333221 2222333222 23345667999999999986 4566
Q ss_pred HHHHHHH
Q 007970 514 KTKYKKI 520 (583)
Q Consensus 514 ~~~~~~~ 520 (583)
......+
T Consensus 213 ~~~~~~~ 219 (228)
T 4i17_A 213 RTEIKQM 219 (228)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6544433
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=4.3e-10 Score=96.57 Aligned_cols=162 Identities=13% Similarity=0.015 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3333444444444444444444443321 223444444455555555555555555554441 2334455555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 484 (583)
..|++++|.++++++.+. .+.+...+..+...+...|++++|+..++++.+.. +.+..++..
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~ 149 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-----------------PNEGKVHRA 149 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----------------ccchHHHHH
Confidence 556666666665555543 23344555555555666666666666666655541 223355555
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 007970 485 LADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
++.++...|++++|.+.+++..+
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666666543
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=5.5e-10 Score=95.87 Aligned_cols=165 Identities=14% Similarity=0.007 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34455566666677777777777666432 23455666666777777777777777777766652 3456667777777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 446 (583)
+...|++++|...++++.+ ..+.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 7777888888888877766 234566777778888888888888888888877652 4456777788888888888888
Q ss_pred HHHHHHHHHHH
Q 007970 447 ALLLWKEIKER 457 (583)
Q Consensus 447 a~~~~~~~~~~ 457 (583)
|...++++.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888887765
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=3.8e-10 Score=117.28 Aligned_cols=164 Identities=14% Similarity=0.000 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007970 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401 (583)
Q Consensus 322 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 401 (583)
..+|+.+...|.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|+..|++..+ -.+.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4566667777777777777777777766652 23466667777777777777777777777765 23445667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-H
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-E 480 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~ 480 (583)
+|.+.|++++|++.|++.++.. +-+...+..+..+|...|++++|++.|+++.+. .|+. .
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l------------------~P~~~~ 146 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL------------------KPDFPD 146 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCChH
Confidence 7777777777777777777642 234667777777777777777777777777765 5553 6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 481 LLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+..+..+|...|++++|.+.+++..+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777777777643
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=2e-09 Score=96.04 Aligned_cols=202 Identities=10% Similarity=0.033 Sum_probs=154.4
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHH
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 135 (583)
.|+..+......+...|++++|+..|+...+....++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46688999999999999999999999999987654677777779999999999999999999999875 55778899999
Q ss_pred HHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH
Q 007970 136 AAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215 (583)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (583)
.+|...|++++|...++......|+....... -..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------------------------------------------~~~~ 119 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKL--------------------------------------------YAIY 119 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH--------------------------------------------HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH--------------------------------------------HHHH
Confidence 99999999999999999988743221110000 0146
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD---HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
|..+...+...|++++|++.|++..+. .|+ ...+..+..++...| ..+++.+...+ ..+...+...
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~ 188 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDV-----TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASE 188 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhc-----CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH
Confidence 888889999999999999999999874 444 566777777775443 44455555544 2334444433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 007970 293 LKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
. ....+.+++|+..|++..+.
T Consensus 189 ~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 189 K--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHhhc
Confidence 3 33456789999999999775
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=6.7e-10 Score=115.43 Aligned_cols=169 Identities=7% Similarity=0.054 Sum_probs=149.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.|-++.+++.|..++.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|+..|++.++.. +-+...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345688999999999999999999999999998653 257889999999999999999999999999986 567889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCH
Q 007970 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213 (583)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (583)
+..+|.+.|++++|++.|++..+.. +.+.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~---------------------------------------------------P~~~ 111 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN---------------------------------------------------PAFA 111 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------------------------TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------------CCCH
Confidence 9999999999999999999887632 3567
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 279 (583)
.+|+.+..+|.+.|++++|++.|++..+. .+-+...+..+..++...|++++|.+.++++.+
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIASYRTALKL----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 89999999999999999999999999985 344578899999999999999999988888764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.3e-10 Score=105.89 Aligned_cols=231 Identities=13% Similarity=-0.001 Sum_probs=156.0
Q ss_pred hcCChhHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 007970 225 NEGRVSDTVRMLGAMRRQEDN----ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI------GV-PANRITYNILL 293 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 293 (583)
..|++++|+..|++....... ..+....++..+...+...|++++|...++.+.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777766553110 11224567888999999999999999999998864 21 23456788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 007970 294 KGYCQQLQIDKAKELLREMADDA-----K-IEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR------GIAP-TKISY 360 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~ 360 (583)
.+|...|++++|...+.+++... . .+....++..+...|...|++++|...++++... +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999987641 1 1234567888889999999999999999998764 1122 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCCC
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDP-------RVKVDIVAWNMLVEGYCRMGL------VEEAKRIIERMKENGFYPN 427 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~g~~p~ 427 (583)
..+...+...|++++|..+++++.+.. ........|..+...+...+. +..+...+...... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 888889999999999999999987520 011122233333333333332 22222222222111 1123
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
..++..+...|...|++++|..+++++.+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888899999999999999998875
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=7.5e-10 Score=102.97 Aligned_cols=235 Identities=12% Similarity=0.015 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc--C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA--G-SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306 (583)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 306 (583)
.+|.+++.+..+. .+++...| .+ .+. + ++++|...|... ...|...|++++|.
T Consensus 2 ~~a~~~~~~a~k~----~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 57 (292)
T 1qqe_A 2 SDPVELLKRAEKK----GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAG 57 (292)
T ss_dssp CCHHHHHHHHHHH----SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHH
T ss_pred CcHHHHHHHHHHH----hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567777777775 33322222 22 232 2 488888888776 34577889999999
Q ss_pred HHHHHHHhcC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhc-CCHHHH
Q 007970 307 ELLREMADDA---KIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PT----KISYTTLMKAFALS-SQPKLA 376 (583)
Q Consensus 307 ~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~-~~~~~a 376 (583)
..|.+..... +..++ ..+|+.+..+|...|++++|+..|++....... .+ ..++..+...|... |++++|
T Consensus 58 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A 137 (292)
T 1qqe_A 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA 137 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 9888775531 21111 467888899999999999999999887653111 11 35678888889986 999999
Q ss_pred HHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHhH
Q 007970 377 NKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV------ATYGSLANGISLARKPGE 446 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~ 446 (583)
...|++..+......+ ..++..+...+.+.|++++|+..|++..+....... ..+..+..++...|++++
T Consensus 138 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 217 (292)
T 1qqe_A 138 IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998762100011 356888999999999999999999999975322211 256777888999999999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH------HHHHHHHHHHH--hhhhHHHHHHHHHHHH
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE------ELLDALADICV--RAAFFRKALEIVACME 506 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 506 (583)
|+..|++..+. .|+. ..+..++.+|. ..+++++|++.++.+.
T Consensus 218 A~~~~~~al~l------------------~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 218 AARTLQEGQSE------------------DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHGGGCC---------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhh------------------CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 99999998753 4432 23455566664 4577889888887764
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=4.9e-09 Score=97.44 Aligned_cols=182 Identities=9% Similarity=-0.044 Sum_probs=129.8
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----CCCcc-hhHHHHHHHHHHcCCChHHH
Q 007970 73 KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM----GITLC-MTTFQSLVAAYVGFGDLEIA 147 (583)
Q Consensus 73 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 147 (583)
++++|...|+.. ...|...|++++|.+.|++..+. |.++. ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478888888776 34577889999999999887764 32222 56888999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-
Q 007970 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE- 226 (583)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 226 (583)
+..++......+... ....-..+++.+..+|...
T Consensus 97 ~~~~~~Al~l~~~~g---------------------------------------------~~~~~a~~~~~lg~~~~~~l 131 (292)
T 1qqe_A 97 VDSLENAIQIFTHRG---------------------------------------------QFRRGANFKFELGEILENDL 131 (292)
T ss_dssp HHHHHHHHHHHHHTT---------------------------------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC---------------------------------------------CHHHHHHHHHHHHHHHHHhh
Confidence 999988876322100 0001145788888999996
Q ss_pred CChhHHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh
Q 007970 227 GRVSDTVRMLGAMRRQEDNASHP--DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR------ITYNILLKGYCQ 298 (583)
Q Consensus 227 g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~ 298 (583)
|++++|+..|++..........+ ...++..+...+.+.|++++|+..|+...+....... ..+..+..++..
T Consensus 132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 99999999999887642100011 0346777888888889999999999888875422221 145667777888
Q ss_pred cCCHHHHHHHHHHHHh
Q 007970 299 QLQIDKAKELLREMAD 314 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~ 314 (583)
.|++++|...|++.+.
T Consensus 212 ~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 212 ATDAVAAARTLQEGQS 227 (292)
T ss_dssp TTCHHHHHHHHHGGGC
T ss_pred cCCHHHHHHHHHHHHh
Confidence 8888888888888764
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=7.2e-10 Score=102.47 Aligned_cols=209 Identities=12% Similarity=0.068 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------C
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED----NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI------G 281 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 281 (583)
...++..+..+|...|++++|+..+.++..... ...+....++..+...+...|++++|...++.+.+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999876410 011234567888999999999999999999998864 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007970 282 -VPANRITYNILLKGYCQQLQIDKAKELLREMADD------AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR--- 351 (583)
Q Consensus 282 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 351 (583)
.+....++..+...|...|++++|...++++++. ...+....++..+...|...|++++|..+++++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1334677888999999999999999999988764 111223567888999999999999999999998763
Q ss_pred ----CCCCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 352 ----GIAPTK-ISYTTLMKAFALSSQ------PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 352 ----~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
...+.. ..+..+.......+. +..+...++.... ..+....++..+..+|...|++++|.+++++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112222 223333333332222 3333333333322 223345678889999999999999999999987
Q ss_pred HC
Q 007970 421 EN 422 (583)
Q Consensus 421 ~~ 422 (583)
+.
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=1.8e-08 Score=91.99 Aligned_cols=192 Identities=10% Similarity=0.054 Sum_probs=118.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGI-APT-KISY 360 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~ 360 (583)
.+...+-.+...+.+.|++++|...|+++++.....+. ...+..+..+|...|++++|+..|+....... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666666777777777777777777654211111 45666666677777777777777777766421 111 3344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 361 TTLMKAFAL--------SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432 (583)
Q Consensus 361 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 432 (583)
..+..++.. .|++++|...|+++.+. .+.+......+.. +..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 555555655 66666666666666652 1212211111111 1111000 011245
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC----HHHHHHHHHHHHhh----------hhHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD----EELLDALADICVRA----------AFFRKA 498 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A 498 (583)
.+...|...|++++|+..|+++++. .|+ ...+..+..+|... |++++|
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDA------------------YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH------------------CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 6778899999999999999999987 443 36777888888876 999999
Q ss_pred HHHHHHHHHcCCCCCHH
Q 007970 499 LEIVACMEEHGIPPNKT 515 (583)
Q Consensus 499 ~~~~~~~~~~~~~p~~~ 515 (583)
...++++.+ ..|+..
T Consensus 215 ~~~~~~~~~--~~p~~~ 229 (261)
T 3qky_A 215 VELYERLLQ--IFPDSP 229 (261)
T ss_dssp HHHHHHHHH--HCTTCT
T ss_pred HHHHHHHHH--HCCCCh
Confidence 999999986 345554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=9.5e-09 Score=93.83 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=141.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HH
Q 007970 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN---RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VV 323 (583)
Q Consensus 248 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~ 323 (583)
+.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+++++...-.+. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4467778888899999999999999999999864 334 678888999999999999999999999876432333 45
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 007970 324 SYNILIDGFIL--------IDDSAGALTFFNEMRARGIAPTK-ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394 (583)
Q Consensus 324 ~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 394 (583)
.+..+..++.. .|++++|+..|+++... .|+. .....+. .+..+.. ....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~-----~~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRA-----KLAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHH-----HHHH
Confidence 67778888888 99999999999999886 3432 2222211 1111111 0112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----VATYGSLANGISLA----------RKPGEALLLWKEIKER 457 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 457 (583)
.+..+..+|.+.|++++|+..|+++.+. .|+ ...+..+..+|... |++++|+..|+++.+.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3567788899999999999999999875 343 45677777788766 8999999999999987
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.5e-07 Score=85.58 Aligned_cols=256 Identities=12% Similarity=0.072 Sum_probs=173.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
++-..-.|.+..++.-...+.. ..+ ...-..+.+++...|+++.. ..-.|....+..+...+ ..
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~-----~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~ 83 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK-----VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT 83 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC-----CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT
T ss_pred HHHHHHhhHHHHHHHHHHhcCc-----cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc
Confidence 3445567888888873332211 222 23444566888888887642 12234444555444443 32
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI-APTKISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~ 378 (583)
+ |+..|+++.... .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+
T Consensus 84 ~----a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 84 K----NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp T----CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred c----HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 788888876532 45666667888899999999999999999877653 2356778888999999999999999
Q ss_pred HHHHHhcCCCCCC-----CHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 379 VFDEMLRDPRVKV-----DIVAWNMLVEGY--CRMG--LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 379 ~~~~~~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.+++|.+ ..| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+
T Consensus 158 ~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 158 IFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 9999976 245 245555565553 3334 899999999999765 4664444455558999999999999
Q ss_pred HHHHHHHHhhh--hhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH
Q 007970 450 LWKEIKERCEV--KKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516 (583)
Q Consensus 450 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 516 (583)
.++.+.+.... .++ ...|+. .++..++......|+ +|.++++++.+ ..|+...
T Consensus 233 ~L~~l~~~~p~~~~k~----------~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKE----------NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHHHSHHHHTTTCH----------HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred HHHHHHHhcccccccc----------cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence 99977654210 000 002444 677677777777887 89999999986 5676653
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=9.6e-08 Score=86.90 Aligned_cols=218 Identities=11% Similarity=0.037 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
.-.-+.++|...|++... . ...|....+..+... ...+ |+..+++..+.+ +++...+..+..
T Consensus 47 ~~~~~~Rs~iAlg~~~~~---------~---~~~~~~~a~~~la~~-~~~~----a~~~l~~l~~~~-~~~~~~~~~la~ 108 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQ---------D---PTSKLGKVLDLYVQF-LDTK----NIEELENLLKDK-QNSPYELYLLAT 108 (310)
T ss_dssp HHHHHHHHHHHTTCCCCC---------C---SSSTTHHHHHHHHHH-HTTT----CCHHHHHTTTTS-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccC---------C---CCCHHHHHHHHHHHH-hccc----HHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 334455777777876631 0 133444344433333 3322 677777777655 455666678888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP-----TKISYTTLMKAF-- 367 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~l~~~~-- 367 (583)
++...|++++|++++.+.+......-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...++.++
T Consensus 109 i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~ 186 (310)
T 3mv2_B 109 AQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIK 186 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHH
Confidence 888999999999999887543211245677888888999999999999999999875 55 355666666653
Q ss_pred HhcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCCCHHHHHHHHH
Q 007970 368 ALSS--QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-----G----FYPNVATYGSLAN 436 (583)
Q Consensus 368 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g----~~p~~~~~~~l~~ 436 (583)
...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. . -+-|+.++..++.
T Consensus 187 l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 187 FATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp HHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 3334 899999999998763 344333334444888999999999999876542 0 0335667766766
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.....|+ +|.++++++.+.
T Consensus 264 l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHhCh--HHHHHHHHHHHh
Confidence 6666776 788899988875
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.8e-08 Score=80.95 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
..|..+...+...|+ +++|+..++++.+. .+.+..++..+...+...|++++|..+|+.+.+.+.
T Consensus 2 ~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD--YDEAIEYYQKALEL------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP- 66 (136)
T ss_dssp HHHHHHHHHHHHHTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-
T ss_pred cHHHHHHHHHHHcCc--HHHHHHHHHHHHHc------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-
Confidence 467888899999998 99999999999874 345788899999999999999999999999988653
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 007970 91 PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 157 (583)
.+...+..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|...++.+...
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 457788889999999999999999999999875 556788889999999999999999999988764
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=3e-08 Score=79.69 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
|..+...+...|++++|..+++++.... +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 4444555555566666666666555442 234455555566666666666666666666542 2344556666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..|++++|.++++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6677777777776666542 334556666666667777777777777666654
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=3.8e-08 Score=86.21 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
.+..++...|++++|...|++..+ ..+.+...+..+..++...|++++|++.|++.++.. +.+..++..+..+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 377788899999999999999887 345678889999999999999999999999998863 34677888888877665
Q ss_pred CC--HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 442 RK--PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 442 g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
|. .+.+...++.... ..|....+..+..++...|++++|...|++..+ +.|+.....
T Consensus 136 ~~~~~~~~~~~~~~~~~------------------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS------------------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHC---C------------------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhC------------------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 53 3344455544431 133334455566677788999999999999874 677765433
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=5.7e-06 Score=82.35 Aligned_cols=376 Identities=9% Similarity=-0.009 Sum_probs=228.9
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCC-cchHHHHHHHHHH
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGK-PKKFLQLFDQMHE 86 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 86 (583)
.-...|...+..+-. ++ ++.+..+|++.+. ..|++..|..-+....+.+. .+....+|+....
T Consensus 13 ~aR~vyer~l~~~P~-~~--~e~~~~iferal~-------------~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS-KD--YRSLESLFGRCLK-------------KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHST-------------TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CC--HHHHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 334577777777754 55 8899999988876 35689999988888877774 4667788888776
Q ss_pred C-CCCC-CHHHHHHHHHHHH----hcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHH
Q 007970 87 F-GAKP-DVLTYNVMIKLCA----RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160 (583)
Q Consensus 87 ~-~~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 160 (583)
. |..| +...|...+..+. .+++.+.+..+|++.+......-...|......-. ......+..++..... .
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~~---~ 152 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDTLP---I 152 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHH---H
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHHhH---H
Confidence 4 5333 5677777776543 34667888899999887422111223332222111 1122233333322211 0
Q ss_pred HHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-------hhHHH
Q 007970 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-------VSDTV 233 (583)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~ 233 (583)
+..|..+++.+.... . ..+...|...+..-...+. .+.+.
T Consensus 153 --------------------y~~ar~~y~~~~~~~-----------~--~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~ 199 (493)
T 2uy1_A 153 --------------------FQSSFQRYQQIQPLI-----------R--GWSVKNAARLIDLEMENGMKLGGRPHESRMH 199 (493)
T ss_dssp --------------------HHHHHHHHHHHHHHH-----------H--TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHH-----------h--hccHHHHHHHHHHHhcCCccCcchhhHHHHH
Confidence 001122222211000 0 0133456555554332211 23466
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
.+|+++... .+.+...|...+..+.+.|+++.|..+++..... |.+...+.. |....+.++. ++.+.
T Consensus 200 ~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 200 FIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 788888775 4556788888888888999999999999999987 444433332 3222222222 22221
Q ss_pred hcC---C-----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHH
Q 007970 314 DDA---K-----I---EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS-SQPKLANKVFD 381 (583)
Q Consensus 314 ~~~---~-----~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~ 381 (583)
... . . ......|...+....+.++.+.|..+|+.. .. ...+...|...+..-... ++++.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 0 011245666666666778899999999999 32 123445554333322233 36999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
...+.. +.++..+...++...+.|+.+.|..+|+++. .....|...+..=...|+.+.+..+++++.+..
T Consensus 345 ~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 345 SGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 998843 3445667778888889999999999999972 246777777776677899999999999988754
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=1.2e-06 Score=80.70 Aligned_cols=226 Identities=8% Similarity=0.044 Sum_probs=171.1
Q ss_pred HHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHCCCCCCHHHH
Q 007970 19 RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG--KPKKFLQLFDQMHEFGAKPDVLTY 96 (583)
Q Consensus 19 ~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~ 96 (583)
+..+.|. ..++|+..+++++.. .|-+..+|+.--.++...| ++++++++++.+...+++ +..+|
T Consensus 41 a~~~~~e-~s~~aL~~t~~~L~~------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW 106 (306)
T 3dra_A 41 ALMKAEE-YSERALHITELGINE------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIW 106 (306)
T ss_dssp HHHHTTC-CSHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHH
T ss_pred HHHHcCC-CCHHHHHHHHHHHHH------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHH
Confidence 3334443 257899999999985 3446788999999999999 999999999999987653 55667
Q ss_pred HHHHHHH----Hhc---CChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH--HHHHHHHHHHhhhHHHHHHHHh
Q 007970 97 NVMIKLC----ARA---SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE--IAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 97 ~~li~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
+.--..+ ... +++++++.+++.+.+.. +-+..+|+.-.-++.+.|.++ ++++.++.+.+.+
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--------- 176 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--------- 176 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---------
Confidence 6555544 455 78999999999999986 668888888888888888888 8888888887643
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHh
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR------VSDTVRMLGAMRR 241 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~ 241 (583)
+.|..+|+.-...+.+.++ ++++++.++.+..
T Consensus 177 ------------------------------------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 177 ------------------------------------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp ------------------------------------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 4677788777777777666 7888888888887
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007970 242 QEDNASHPDHVTYTTVVSALVKAGSMD-RARQVLAEMTRIG--VPANRITYNILLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
. .+-|...|+.+-..+.+.|+.. .+..+...+.+.+ -+.+...+..++.+|.+.|+.++|.++++.+.+
T Consensus 215 ~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 215 K----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp H----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5 4567888888888887777643 3555666555432 234677788888888888888888888888764
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=4.6e-08 Score=85.66 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=84.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 007970 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407 (583)
Q Consensus 328 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (583)
+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ ..+.+..++..+..+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 6777788888888888888887763 34577778888888888888888888888876 34556777777777776554
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 408 L--VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 408 ~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+ .+.+...++.... ..|....+.....++...|++++|+..|+++++.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 3344555555432 1222223344455566778888888888888754
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=3.1e-08 Score=103.44 Aligned_cols=158 Identities=12% Similarity=0.005 Sum_probs=126.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 333 ILIDDSAGALTFFNEMR--------ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...|+++.+ ..+.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHH
Confidence 67888999999998887 43 244567788888888899999999999988887 34557788888888899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLD 483 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~ 483 (583)
..|++++|++.|++..+.. +-+...+..+..++...|++++ ++.|+++.+. .|+ ...+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~------------------~P~~~~a~~ 538 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST------------------NDGVISAAF 538 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH------------------CTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh------------------CCchHHHHH
Confidence 9999999999999988752 3356778888888999999999 9999998876 554 47888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.+..++.+.|++++|++.+++..+ +.|+..
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~ 568 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPP--TSRHFT 568 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCT--TSTTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcc--cCcccH
Confidence 888899999999999999988763 456643
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=1.9e-07 Score=82.88 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-HHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP-A-NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV-VSYN 326 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ 326 (583)
+...+..+...+...|++++|+..|+.+.+.... + ....+..+..+|.+.|++++|+..|+++++...-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777788889999999999988875311 1 13567778888888999999999998887754333332 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 007970 327 ILIDGFIL------------------IDDSAGALTFFNEMRARGIAPTK-ISYTTLMKAFALSSQPKLANKVFDEMLRDP 387 (583)
Q Consensus 327 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 387 (583)
.+..++.. .|++++|+..|+++.+. .|+. ......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 44444443 34455555555555443 2221 111110000 0000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-V---ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
......+...|.+.|++++|+..|+++++. .|+ . ..+..+..++.+.|++++|++.++.+...
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 011134567788999999999999999875 343 2 46778888999999999999999988775
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=3e-08 Score=92.87 Aligned_cols=201 Identities=10% Similarity=0.026 Sum_probs=138.4
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (583)
..|++++|.+++++..+.. +.. +.+ .++++.|...|..+ ...|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~----~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL----KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH----CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHc----ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHH
Confidence 3567888999998887652 111 111 46777777777654 34577788888
Q ss_pred HHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHH
Q 007970 304 KAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRARGI---APT--KISYTTLMKAFALSSQPK 374 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~ 374 (583)
+|...|.+.........+ ..+|..+...|...|++++|+..|++....-. .+. ..++..+...|.. |+++
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~ 132 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS 132 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH
Confidence 888888776542111111 34677788888888999998888887654310 111 3466777788888 9999
Q ss_pred HHHHHHHHHhcCC---CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHh
Q 007970 375 LANKVFDEMLRDP---RVK-VDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYPN-VATYGSLANGISLARKPG 445 (583)
Q Consensus 375 ~a~~~~~~~~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~ 445 (583)
+|...|++..+.. +.. ....++..+..+|.+.|++++|++.|++..+. +..+. ...+..+..++...|+++
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 9999998876521 110 11467888899999999999999999998752 11111 225666667778889999
Q ss_pred HHHHHHHHHH
Q 007970 446 EALLLWKEIK 455 (583)
Q Consensus 446 ~a~~~~~~~~ 455 (583)
+|+..|++..
T Consensus 213 ~A~~~~~~al 222 (307)
T 2ifu_A 213 AAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999987
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=2.1e-07 Score=82.60 Aligned_cols=185 Identities=11% Similarity=-0.014 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 007970 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK----IS 359 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~ 359 (583)
+...+..+...+...|++++|+..|+++++.....+. ...+..+..+|.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4455666777888999999999999999875332222 3577788889999999999999999988753 332 13
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 360 YTTLMKAFAL------------------SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 360 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
+..+..++.. .|++++|...|+++.+. .|-+...+....... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH--
Confidence 4444444443 34455555555555542 122222111111000 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH----HHHHHHHHHHHhhhhHHH
Q 007970 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE----ELLDALADICVRAAFFRK 497 (583)
Q Consensus 422 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 497 (583)
......+...|...|++++|+..|+++++. .|+. ..+..+..+|.+.|++++
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD------------------YPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------STTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------CcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 001134566788999999999999999987 4442 568888999999999999
Q ss_pred HHHHHHHHHHcC
Q 007970 498 ALEIVACMEEHG 509 (583)
Q Consensus 498 A~~~~~~~~~~~ 509 (583)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 999999987643
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=9.1e-08 Score=88.45 Aligned_cols=168 Identities=12% Similarity=0.016 Sum_probs=114.9
Q ss_pred CcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCC
Q 007970 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204 (583)
Q Consensus 125 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (583)
+.+...+..+...+...|++++|...|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------- 147 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS---------------------------------------------- 147 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------------------------------
Confidence 4556667777777888888888888888776632
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 007970 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT-TVVSALVKAGSMDRARQVLAEMTRIGVP 283 (583)
Q Consensus 205 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (583)
+.+..++..+..++.+.|++++|...++.+... .|+..... .....+...++.+.|...++...... |
T Consensus 148 -----P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P 216 (287)
T 3qou_A 148 -----NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-P 216 (287)
T ss_dssp -----TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-T
T ss_pred -----CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-C
Confidence 345677777888888888888888888877654 34433222 22223556666777777777777654 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 349 (583)
.+...+..+...+...|++++|+..|.++++...-..+...+..++..+...|+.++|...|++..
T Consensus 217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 567777777888888888888888888777653222235667777777777777777777776643
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=2.4e-07 Score=81.21 Aligned_cols=176 Identities=12% Similarity=-0.013 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 007970 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS----QPKLANKVF 380 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~ 380 (583)
|.+.|++..+ .-+...+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 5 A~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555555544 2355666666666666677777777777766654 45556666666665 5 677777777
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 007970 381 DEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFY-PNVATYGSLANGISL----ARKPGEALLLW 451 (583)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~ 451 (583)
++..+. -+...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .+++++|+.+|
T Consensus 77 ~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777652 356667777777766 67888888888888775421 016677778878877 77899999999
Q ss_pred HHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhh-h-----hHHHHHHHHHHHHHcCC
Q 007970 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA-A-----FFRKALEIVACMEEHGI 510 (583)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 510 (583)
++..+. .++...+..|..+|... | ++++|..+++...+.|.
T Consensus 153 ~~A~~~------------------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL------------------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT------------------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc------------------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988764 34455677777777654 3 89999999999887663
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=9.3e-08 Score=99.87 Aligned_cols=153 Identities=16% Similarity=0.030 Sum_probs=86.1
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 297 CQQLQIDKAKELLREMA--------DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
...|++++|++.+++.+ +. .+.+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 44556666666665554 21 12234455555556666666666666666655542 234555555566666
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 448 (583)
..|++++|...|+++.+ ..+.+...|..+..+|.+.|++++ ++.|++..+.. +-+...+..+..++...|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666654 223345555666666666666666 66666665542 224455666666666666666666
Q ss_pred HHHHHHHH
Q 007970 449 LLWKEIKE 456 (583)
Q Consensus 449 ~~~~~~~~ 456 (583)
+.|+++.+
T Consensus 555 ~~~~~al~ 562 (681)
T 2pzi_A 555 RTLDEVPP 562 (681)
T ss_dssp HHHHTSCT
T ss_pred HHHHhhcc
Confidence 66665553
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=1e-06 Score=77.22 Aligned_cols=175 Identities=13% Similarity=0.018 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 007970 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID----DSAGALTF 344 (583)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~ 344 (583)
+|.+.|+...+.| +...+..+...|...+++++|..+|++..+. -+...+..+...|.. + ++++|+.+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 5666777777777788888888888877652 356667777777766 5 78888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHH
Q 007970 345 FNEMRARGIAPTKISYTTLMKAFAL----SSQPKLANKVFDEMLRDPRVK-VDIVAWNMLVEGYCR----MGLVEEAKRI 415 (583)
Q Consensus 345 ~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 415 (583)
|++..+.| +...+..+...|.. .+++++|..+|++..+. +.. .+...+..|...|.. .+++++|+.+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 88887765 56667777777766 77888888888888763 210 126777888888888 7789999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHHH
Q 007970 416 IERMKENGFYPNVATYGSLANGISLA-R-----KPGEALLLWKEIKER 457 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 457 (583)
|++..+. ..+...+..|...|... | ++++|+.+|++..+.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9988875 23455666677776543 3 788999999888775
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=6.3e-06 Score=75.76 Aligned_cols=229 Identities=10% Similarity=-0.032 Sum_probs=160.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHhCCCcchhHHHHHHHHH---
Q 007970 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS--RKHLLVFVLERILEMGITLCMTTFQSLVAAY--- 138 (583)
Q Consensus 64 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 138 (583)
+.....+....++|+++++.+...++ -+..+|+.--.++...+ ++++++..++.++..+ +-+..+|+.-..++
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 33333344445689999999998764 24566888778888888 9999999999999886 55666666554444
Q ss_pred -HcC---CChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 139 -VGF---GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 139 -~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
... +++++++.+++.+.+.. +.+..
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~---------------------------------------------------pkny~ 145 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD---------------------------------------------------PKNHH 145 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC---------------------------------------------------TTCHH
T ss_pred HHhccccCCHHHHHHHHHHHHHhC---------------------------------------------------CCCHH
Confidence 444 77888888888887632 57788
Q ss_pred HHHHHHHHHHhcCChh--HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhCCCCCCH
Q 007970 215 IYTTLMKGYMNEGRVS--DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS------MDRARQVLAEMTRIGVPANR 286 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~ 286 (583)
+|+.-.-++.+.|.++ ++++.++.+.+. -+-|...|+.-.....+.+. ++++++.++.++... +-|.
T Consensus 146 aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~ 220 (306)
T 3dra_A 146 VWSYRKWLVDTFDLHNDAKELSFVDKVIDT----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNP 220 (306)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCH
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCc
Confidence 8888888888888888 999999999886 45677788777666666665 777777777777664 5567
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDK-AKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
..|+.+-..+.+.|+... +..+..++.... .-..+...+..+...|.+.|+.++|+++++.+..
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777777777666333 444555543311 1134556666666777777777777777777664
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=8.8e-08 Score=81.30 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA-LVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
+...+..+..++...|++++|+..++..... .|+...+..+... +...+....|...++...+.. |.+...+.
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~ 112 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLE-----YQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELAC 112 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHH
Confidence 3444555555555555555555555554442 1122222111111 111111222344444444432 22344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 347 (583)
.+..++...|++++|...|+++++......+...+..+...+...|+.++|...|++
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 445555555555555555554443211111233444444444444555544444443
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=2.8e-08 Score=81.78 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=2.5
Q ss_pred CChhHHH
Q 007970 227 GRVSDTV 233 (583)
Q Consensus 227 g~~~~A~ 233 (583)
|++++|+
T Consensus 79 ~~~~~A~ 85 (150)
T 4ga2_A 79 ENTDKAV 85 (150)
T ss_dssp TCHHHHH
T ss_pred CchHHHH
Confidence 3333333
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=1.7e-08 Score=83.12 Aligned_cols=123 Identities=11% Similarity=-0.076 Sum_probs=82.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
.+...|++++|+..++...... +-+...+..+...|.+.|++++|.+.|++..+ -.+.+..+|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchH
Confidence 3445566777777776655431 11234455667777777888888888877776 33456777778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH-HHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL-WKEIKER 457 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 457 (583)
+|+..|++..+.. +-+...+..+...|...|++++|.+. ++++.+.
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 8888888877652 23566777777778888877766554 4677665
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=2.4e-07 Score=85.60 Aligned_cols=165 Identities=11% Similarity=0.006 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 007970 91 PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 170 (583)
.+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++.+....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------------ 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------------ 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------------
Confidence 455667778888999999999999999999986 6678899999999999999999999998876532
Q ss_pred ccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC
Q 007970 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249 (583)
Q Consensus 171 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 249 (583)
|+... .......+...++.++|.+.+++.... .+.
T Consensus 182 ----------------------------------------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~----~P~ 217 (287)
T 3qou_A 182 ----------------------------------------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE----NPE 217 (287)
T ss_dssp ----------------------------------------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----CTT
T ss_pred ----------------------------------------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc----CCc
Confidence 33332 233334466778888899999888875 455
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN--RITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
+...+..+...+...|++++|...|..+.+.. +.+ ...+..++..|...|+.++|...|++.+
T Consensus 218 ~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 218 DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 67888899999999999999999999998864 222 6778889999999999999998887765
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=2.2e-07 Score=95.33 Aligned_cols=150 Identities=11% Similarity=-0.022 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (583)
|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|++..+ ..+.+...+..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444444444444331 22334444444444455555555555555444 1223344444555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhh--
Q 007970 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRA-- 492 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-- 492 (583)
+++..+.. +.+...+..+..++...|++++|++.++++.+. .|+ ...+..+..++...
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL------------------LPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhc
Confidence 55554431 223444444555555555555555555555443 222 34444445555555
Q ss_pred -hhHHHHHHHHHHHHH
Q 007970 493 -AFFRKALEIVACMEE 507 (583)
Q Consensus 493 -g~~~~A~~~~~~~~~ 507 (583)
|++++|.+.+++..+
T Consensus 141 ~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVA 156 (568)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHh
Confidence 555555555555443
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=7.4e-08 Score=81.77 Aligned_cols=160 Identities=10% Similarity=0.005 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA-FAL 369 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 369 (583)
.+...+...|++++|...|+++++.. +.+...+..+...+...|++++|+..|+.+.... |+.......... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34444555566666666555554321 2234455555555556666666666665554431 232222211111 111
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEAL 448 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 448 (583)
.+....|...+++..+ ..+.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222335666766665 234457777778888888888888888888877653221 2456777777888888888888
Q ss_pred HHHHHHHH
Q 007970 449 LLWKEIKE 456 (583)
Q Consensus 449 ~~~~~~~~ 456 (583)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=1.4e-05 Score=79.47 Aligned_cols=374 Identities=9% Similarity=-0.014 Sum_probs=226.1
Q ss_pred hhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 28 PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 107 (583)
.+.|..+|+.+.... |. |+++.+..+|+..... .|+...|...+....+.+
T Consensus 11 i~~aR~vyer~l~~~-------------P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~ 61 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY-------------MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS 61 (493)
T ss_dssp -CCHHHHHHHHHHHH-------------HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHC-------------CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC
Confidence 667777777777641 22 8899999999999884 479999999998887776
Q ss_pred C-hhHHHHHHHHHHHh-CC-CcchhHHHHHHHHHHc----CCChHHHHHHHHHHHhhhH-HHHHHHHhhhhccccccCCC
Q 007970 108 R-KHLLVFVLERILEM-GI-TLCMTTFQSLVAAYVG----FGDLEIAETIVQAMREGRR-DVCKIIRELDLEDYSSENEG 179 (583)
Q Consensus 108 ~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 179 (583)
+ .+....+|+..+.. |. +.+...|...+..+.. .++++.+.++|+....... +...++
T Consensus 62 ~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw-------------- 127 (493)
T 2uy1_A 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELW-------------- 127 (493)
T ss_dssp ----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHH--------------
T ss_pred chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHH--------------
Confidence 4 45667788887764 42 3466788877776543 3556777888877765211 000111
Q ss_pred CCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 007970 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259 (583)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~ 259 (583)
..|..... ..+..+...++.-. .+.+..|..++..+.... ...+...|...+.
T Consensus 128 ------~~Y~~fE~----------------~~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~---~~~s~~~W~~y~~ 180 (493)
T 2uy1_A 128 ------KDFENFEL----------------ELNKITGKKIVGDT--LPIFQSSFQRYQQIQPLI---RGWSVKNAARLID 180 (493)
T ss_dssp ------HHHHHHHH----------------HHCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HTCSHHHHHHHHH
T ss_pred ------HHHHHHHH----------------HhccccHHHHHHHH--hHHHHHHHHHHHHHHHHH---hhccHHHHHHHHH
Confidence 11111100 01111222222221 123444555555544321 0113345655555
Q ss_pred HHHHcC--C-----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 007970 260 ALVKAG--S-----MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332 (583)
Q Consensus 260 ~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 332 (583)
--...+ - .+.+..+|+.++... +.+...|...+..+.+.|+.+.|..++++.+.. +.+...|.. |
T Consensus 181 ~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y 252 (493)
T 2uy1_A 181 LEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----Y 252 (493)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----H
T ss_pred HHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----H
Confidence 432221 1 345778999988753 667888999999999999999999999999875 333333332 2
Q ss_pred HhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007970 333 ILIDDSAGALTFFNEMRAR---------GIAP---TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 400 (583)
....+.++. ++.+... +..+ ....|...+..+.+.+..+.|..+|++. +..+ .+...|....
T Consensus 253 ~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A 326 (493)
T 2uy1_A 253 GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCA 326 (493)
T ss_dssp HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHH
T ss_pred HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHH
Confidence 221111111 2222211 0001 1245666666666778899999999999 4222 3444554333
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH
Q 007970 401 EGYCRMG-LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479 (583)
Q Consensus 401 ~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 479 (583)
..-...+ +.+.|..+|+...+. ++-++..+...+......|+.+.|..+|+++. ...
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~---------------------k~~ 384 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE---------------------KTS 384 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC---------------------CBH
T ss_pred HHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HHH
Confidence 3333333 699999999999875 33345556667777778899999999998762 245
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..|...+..=...|+.+.+.++++.+..
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777777778999999998888864
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=1.7e-06 Score=80.19 Aligned_cols=171 Identities=8% Similarity=-0.055 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCC--H
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTK------ISYTTLMKAFALSSQPKLANKVFDEMLRDPRV--KVD--I 393 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~ 393 (583)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++..+.... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566677888888888888877765322 22 12334555667788999999999888752111 111 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYPN-----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 467 (583)
.+++.+...|...|++++|+..++++.+. ...|+ ..++..+..+|...|++++|+..++++.+.....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~------ 229 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI------ 229 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc------
Confidence 58899999999999999999999998731 01222 2578889999999999999999999998763210
Q ss_pred CCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHH-HHHHHHHHH
Q 007970 468 DSDLPPPLKPD-EELLDALADICVRAAFFRKA-LEIVACMEE 507 (583)
Q Consensus 468 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 507 (583)
+.... ..++..+..+|.+.|++++| ...+++...
T Consensus 230 ------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 230 ------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11222 57888999999999999999 777887653
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=2e-06 Score=79.81 Aligned_cols=168 Identities=9% Similarity=0.010 Sum_probs=126.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVV----SYNILIDGFILIDDSAGALTFFNEMRARGIA-PT----KISYTT 362 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 362 (583)
.+..+...|++++|..++++..+.....++.. .+..+...+...+++++|+..|+++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999999876443334422 3445666777888999999999999874322 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcC---C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRD---P-RVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKE----NGFYPN-VATYG 432 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~ 432 (583)
+...|...|++++|...|+++.+. . ...+ ...++..+..+|.+.|++++|++.+++..+ .+..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 899999999999999999998731 0 1122 234788999999999999999999998864 222233 56888
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHHHHhh
Q 007970 433 SLANGISLARK-PGEALLLWKEIKERCE 459 (583)
Q Consensus 433 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 459 (583)
.+..++...|+ +++|++.++++.....
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 89999999995 6999999999887643
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=3.6e-07 Score=93.70 Aligned_cols=153 Identities=9% Similarity=-0.040 Sum_probs=105.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++.++.. +.+...+..+..+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 467888888888887654 4567788888888888888888888888887532 3457778888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM---GLVEEAKRIIERMK 420 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~ 420 (583)
.|++..+.. +.+...+..+..++...|++++|.+.|++..+ ..+.+...+..+..++... |++++|.+.+++..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888887763 44567788888888888888888888888876 2345677788888888888 88888888888887
Q ss_pred HC
Q 007970 421 EN 422 (583)
Q Consensus 421 ~~ 422 (583)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=9.2e-07 Score=77.58 Aligned_cols=126 Identities=14% Similarity=-0.066 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...|++..+ ..+.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHH
Confidence 444555667778888888877765 355677778888888888888888888888776 23556778888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPN----------------VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..|++++|++.|++..+.. +.+ ...+..+..++...|++++|+..|+++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888999988888888742 222 267888889999999999999999999865
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=1.8e-05 Score=73.25 Aligned_cols=170 Identities=8% Similarity=-0.081 Sum_probs=126.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHH
Q 007970 326 NILIDGFILIDDSAGALTFFNEMRARGI-APTKI----SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAW 396 (583)
Q Consensus 326 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 396 (583)
...+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...|+++.+.....++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346678899999999999999887422 12211 2334666677778999999999999873222233 3478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCC
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKE----N-GFYPN-VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~----~-g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (583)
+.+..+|...|++++|+..|+++.+ . +..+. ..++..+...|...|++++|+..++++.+.....
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--------- 229 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--------- 229 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc---------
Confidence 9999999999999999999999874 1 11222 2377888999999999999999999998764221
Q ss_pred CCCCCCCC-HHHHHHHHHHHHhhh-hHHHHHHHHHHHHH
Q 007970 471 LPPPLKPD-EELLDALADICVRAA-FFRKALEIVACMEE 507 (583)
Q Consensus 471 ~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 507 (583)
+..+. ..++..+..+|.+.| .+++|.+.+++...
T Consensus 230 ---~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 ---NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ---TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 11233 578889999999999 57999999999854
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=5.7e-07 Score=71.23 Aligned_cols=103 Identities=14% Similarity=-0.020 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+......|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|+..++++++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------------- 76 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--------------- 76 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---------------
Confidence 3456677778888888888888888887752 446778888888888888888888888888876
Q ss_pred CCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH
Q 007970 473 PPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516 (583)
Q Consensus 473 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 516 (583)
.|+ ...|..+..+|...|++++|++.|++..+ +.|+...
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 116 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ--VDPSNEE 116 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHH
Confidence 444 57788888888888888888888888875 4565543
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=3e-07 Score=75.21 Aligned_cols=103 Identities=8% Similarity=-0.058 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
+...+..+...+.+.|++++|+..|+...+..+ .+...|..+..++...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 567888999999999999999999999998764 367889999999999999999999999999986 667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDV 161 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~ 161 (583)
+|.+.|++++|...|+......++.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999998865544
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=2e-06 Score=71.85 Aligned_cols=128 Identities=14% Similarity=0.042 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
..+..+...+...|++++|...|++..+ ..+.+..++..+..++...|++++|++.+++..+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456666677788888888888888776 234567788888888889999999999999888752 4467788888888
Q ss_pred HHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHH--HHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELL--DALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
+...|++++|+..++++.+. .|+ ...+ ..++..+.+.|++++|++.++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~------------------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999998876 333 3444 334445778899999999888764
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=2.5e-06 Score=79.70 Aligned_cols=136 Identities=8% Similarity=0.015 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC--
Q 007970 12 AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-- 89 (583)
Q Consensus 12 ~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 89 (583)
.|+.....|...|+ +++|+..|.+..+...+..+ ...-..+|+.+..+|.+.|++++|+..|++..+.-.
T Consensus 38 ~~~~a~~~~~~~g~--~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQ--LEQAKDAYLQEAEAHANNRS------LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 56666677777777 77887777777664332211 011245677777777777888888777777654310
Q ss_pred -CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----chhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 90 -KPD--VLTYNVMIKLCARASRKHLLVFVLERILEMGITL-----CMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 90 -~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
.+. ..++..+...|.. |++++|+..|++..+..... ...++..+..+|.+.|++++|+..|++...
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 3455666666666 77777777777666532100 134566667777777777777777776655
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.67 E-value=1.9e-05 Score=73.39 Aligned_cols=231 Identities=10% Similarity=0.054 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHCCCC
Q 007970 12 AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG-KPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 12 ~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~ 90 (583)
.++.+-..+.+.+. .++|+.++++++.. .|-+..+|+.--.++...| .+++++++++.+.....
T Consensus 56 ~~~~~r~~~~~~e~--se~AL~lt~~~L~~------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP- 120 (349)
T 3q7a_A 56 AMDYFRAIAAKEEK--SERALELTEIIVRM------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL- 120 (349)
T ss_dssp HHHHHHHHHHTTCC--SHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHh------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-
Confidence 44554445554544 67899999999985 4556788999888888888 59999999999998765
Q ss_pred CCHHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH--------HHHHHHHHHHhhhHH
Q 007970 91 PDVLTYNVMIKLCARA-S-RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE--------IAETIVQAMREGRRD 160 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~ 160 (583)
.+..+|+.-...+... + ++++++++++.+.+.. +-|..+|+.-.-++.+.|.++ ++++.++.+.+..
T Consensus 121 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-- 197 (349)
T 3q7a_A 121 KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-- 197 (349)
T ss_dssp CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--
Confidence 4777888877777776 6 8899999999999875 567777776555555555555 6777776666532
Q ss_pred HHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-------hhHHH
Q 007970 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-------VSDTV 233 (583)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~ 233 (583)
+.|..+|+.....+.+.++ +++++
T Consensus 198 -------------------------------------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 198 -------------------------------------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp -------------------------------------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred -------------------------------------------------CCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 4677888888777777776 67888
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhCC-----CCCCHHH
Q 007970 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM--------------------DRARQVLAEMTRIG-----VPANRIT 288 (583)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~~~ 288 (583)
+.+++.... .+-|...|+.+-..+.+.|.. ....+....+...+ -.++...
T Consensus 229 e~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 229 IYILKSIHL----IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 888888875 455777887777766666543 11222222222111 0244555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
...++..|...|+.++|.++++.+.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5556666666666666666666554
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=2e-06 Score=75.43 Aligned_cols=145 Identities=15% Similarity=-0.062 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 439 (583)
+..+...+...|++++|...|++.. .|+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 4556667888999999999998874 4588899999999999999999999999998763 457788999999999
Q ss_pred hcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCH
Q 007970 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 514 (583)
..|++++|+..|+++.+......... .........|+. ..+..+..+|.+.|++++|.+.+++..+ +.|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLID--YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEE--CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHH--HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 99999999999999988521100000 000000023333 7888899999999999999999999985 45554
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=2.1e-06 Score=79.61 Aligned_cols=168 Identities=8% Similarity=-0.019 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHH
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDV----VSYNILIDGFILIDDSAGALTFFNEMRARGI---APT--KISY 360 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~ 360 (583)
...+..+...|++++|.+.+.+.++.....++. ..+..+...+...|++++|+..+++...... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 334555666777777777776665532211111 1233345556677888888888888765321 111 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh---cCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHH
Q 007970 361 TTLMKAFALSSQPKLANKVFDEML---RDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYPN-VAT 430 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~ 430 (583)
+.+...|...|++++|...|++.. +.....+ ...++..+..+|.+.|++++|++.+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 788888888899999999888876 2111111 1257888899999999999999999988643 11111 567
Q ss_pred HHHHHHHHHhcCCHhHH-HHHHHHHHHH
Q 007970 431 YGSLANGISLARKPGEA-LLLWKEIKER 457 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 457 (583)
|..+..+|...|++++| ...++++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88889999999999999 7778887654
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=6.3e-07 Score=73.26 Aligned_cols=103 Identities=14% Similarity=-0.006 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCC
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 471 (583)
+...+..+...+.+.|++++|++.|+++.+.. +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-------------- 99 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-------------- 99 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------------
Confidence 45567777888888888888888888888752 346778888888888888888888888888876
Q ss_pred CCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 472 PPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 472 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.|+ ...+..+..+|.+.|++++|...|++..+ +.|+..
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 555 37788888888888888888888888876 345554
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1.6e-06 Score=72.47 Aligned_cols=129 Identities=7% Similarity=-0.030 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...+..+...+...|++++|...|...... .+.+...+..+...+...|++++|...++...+.. +.+...+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777778888888888888877765 34456677777777777888888888887777654 4456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSY--NILIDGFILIDDSAGALTFFNEM 348 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m 348 (583)
..++...|++++|...|+++..... .+...+ ..+...+...|++++|+..+...
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777777777765422 233333 22333355666777777666654
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.5e-06 Score=68.77 Aligned_cols=103 Identities=6% Similarity=0.010 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (583)
..+......|.+.|++++|++.|++..+... .+..+|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3444555555555555555555555544332 234445555555555555555555555555543 33444555555555
Q ss_pred HcCCChHHHHHHHHHHHhhhHHHHH
Q 007970 139 VGFGDLEIAETIVQAMREGRRDVCK 163 (583)
Q Consensus 139 ~~~g~~~~A~~~~~~~~~~~~~~~~ 163 (583)
...|++++|.+.|+...+..|+...
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 5555555555555555554444333
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=2.6e-06 Score=67.96 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 435 (583)
+...+..+...+...|++++|...|++..+ ..+.+...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345566666677777777777777777765 234456677777777777777777777777777642 33566777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHH
Q 007970 436 NGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.++...|++++|++.|+++.+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 7777778888888888777765
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=1e-06 Score=72.02 Aligned_cols=108 Identities=8% Similarity=-0.065 Sum_probs=84.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.|+.+.. ..+.+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3445544 223455667778888889999999999999888752 447778888888889999999999999998876
Q ss_pred hhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 459 EVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..+|...|++++|.+.+++..+
T Consensus 85 -----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 -----------------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 454 47788888899999999999999998875
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.55 E-value=6.8e-05 Score=69.67 Aligned_cols=185 Identities=9% Similarity=-0.003 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS-RKHLLVFVLERILEMGITLCMTTFQSLVAA 137 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (583)
..++.+-....+.+..++|+++++.+...+. -+..+|+.--..+...+ .+++++..++.+.... +-+..+|+.-..+
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445555555566667899999999998764 35667887777777788 5999999999999876 5677788876666
Q ss_pred HHcC-C-ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH
Q 007970 138 YVGF-G-DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215 (583)
Q Consensus 138 ~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (583)
+.+. + ++++++++++.+.+. .+.+..+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~---------------------------------------------------dpkNy~A 161 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLP---------------------------------------------------DPKNYHT 161 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSS---------------------------------------------------CTTCHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHh---------------------------------------------------CCCCHHH
Confidence 6665 6 778888888877653 2567888
Q ss_pred HHHHHHHHHhcCChh--------HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhC
Q 007970 216 YTTLMKGYMNEGRVS--------DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS-------MDRARQVLAEMTRI 280 (583)
Q Consensus 216 ~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~ 280 (583)
|+.-.-++.+.+.++ ++++.++++.+. .+-|...|+.....+.+.+. ++++++.++.++..
T Consensus 162 W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~----dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 162 WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV----DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 887777776666666 888888888876 45677888888777777765 57777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 007970 281 GVPANRITYNILLKGYCQQLQ 301 (583)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~~~ 301 (583)
. +-|...|+.+-..+.+.|.
T Consensus 238 ~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 238 I-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp C-TTCHHHHHHHHHHHHHTTC
T ss_pred C-CCCHHHHHHHHHHHHhcCC
Confidence 4 5566777666666655554
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=2.8e-06 Score=66.79 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|..+...+...|+ +++|+..|+++.+. .+.+..++..+...+...|++++|..+|+.+.+...
T Consensus 9 ~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGD--YDEAIEYYQKALEL------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (125)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777 77888777777764 344566777777777777888888887777776542
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
.+..++..+...+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 75 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 75 -NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 355667777777777777777777777777664 344455555544443
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=1.2e-06 Score=71.66 Aligned_cols=100 Identities=12% Similarity=-0.028 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.+...+..+...+.+.|++++|+..|+..... .+.+...|..+..++...|++++|+..|+.+.... +.+...+.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~ 93 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 34567777888888888888888888888775 34567778888888888888888888888888764 45667778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
.+..+|...|++++|...|++.++.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888887664
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=4.3e-06 Score=65.63 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
...+..+...+...|++++|..+|+++.+. .+.+..++..+..++.+.|++++|..+++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 345555566666666666666666666552 23455666666677777777777777777766542 335566666677
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+...|++++|...++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 777777777777777777654
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=1.7e-06 Score=79.58 Aligned_cols=194 Identities=15% Similarity=0.105 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007970 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400 (583)
Q Consensus 321 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 400 (583)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++++.+ ..+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45566777777888888888888888887752 33677788888888889999999999988876 3456678888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNV-ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 479 (583)
.+|...|++++|+..|++..+.. |+. ..+...+..... ..++.. +...... ....+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~----------------~~~~~~ 137 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER----------------RIHQES 137 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT----------------CCCCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH----------------HHhhhH
Confidence 99999999999999998887531 211 011111111111 111111 1122221 123444
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 559 (583)
.+...+... ..|++++|++.++...+ ..|+.......+..++.+ ..+.+++|.+++.+..
T Consensus 138 ~i~~~l~~l--~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~----------------~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 138 ELHSYLTRL--IAAERERELEECQRNHE--GHEDDGHIRAQQACIEAK----------------HDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHHH--HHHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHH----------------HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHH----------------HHHHHHHHHHHHHhhh
Confidence 444444332 36999999999988764 567665443332222222 2367788888886653
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=3e-06 Score=73.45 Aligned_cols=160 Identities=13% Similarity=-0.040 Sum_probs=96.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCC-CCHHHHHHHHHHHHHcCCH
Q 007970 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVK-VDIVAWNMLVEGYCRMGLV 409 (583)
Q Consensus 334 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~~~li~~~~~~g~~ 409 (583)
..|++++|.++++.+... .......+..+...+...|++++|...+++... ..+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345556666543333221 112344555555666666666666666665543 11111 2245667777788888888
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHH
Q 007970 410 EEAKRIIERMKEN----GFYP--NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EEL 481 (583)
Q Consensus 410 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~ 481 (583)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+.... .-.+. ..+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~ 149 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ-------------ADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-------------ccchHHHHHH
Confidence 8888888876542 1111 1345677777788888999998888888765321 00111 245
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+..+..++...|++++|.+.+++..+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67778888889999999988888754
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=2.1e-06 Score=68.17 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=92.3
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
.+...|..+...+...|+ +++|+..|+++.+. .+.+...+..+..++...|++++|...++...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVEN--FEAAVHFYGKAIEL------------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccC--HHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 345677777788888887 88888888888774 3446778888888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
.. .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 DP-AYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred Cc-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 43 346677778888888888888888888888774 44666777777777666654
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=1.4e-06 Score=73.78 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=87.6
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKP-- 444 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~-- 444 (583)
...|++++|...++...+ ..+.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677778888877766 234567788888888888888888888888887652 3366677777777 6778887
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
++|+..++++.+. .|+ ...+..+..+|...|++++|...++++.+
T Consensus 98 ~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALAL------------------DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 8888888888876 444 56777788888888888888888888875
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=5.1e-06 Score=66.16 Aligned_cols=119 Identities=9% Similarity=0.024 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 007970 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288 (583)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (583)
.+.+...+..+...+...|++++|.+.|++.... .+.+...+..+...+...|++++|...++.+.+.. +.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 3556778888888888888888888888888775 34467777778888888888888888888887754 446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
+..+..++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHH
Confidence 7777888888888888888888776542 1233444445444443
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=8.8e-06 Score=74.72 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+...+..+...+.+.|++++|+..|...... .+.+...|..+..++.+.|++++|...++.+.+.. +.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4556666777777777777777777777664 23356666777777777777777777777776653 445666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 007970 292 LLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
+..+|...|++++|...|++..+
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777766654
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=3.3e-06 Score=67.02 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
..+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 44555555666666666666666666552 23455666666666777777777777777766542 3345566666667
Q ss_pred HHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhh
Q 007970 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAF 494 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 494 (583)
+...|++++|...++++.+. .| +...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL------------------DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhc------------------CccchHHHHHHHHHHHHHhc
Confidence 77777777777777776665 33 34555556666655554
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=5e-06 Score=78.57 Aligned_cols=95 Identities=12% Similarity=-0.051 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
..+|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|+++.+.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------- 259 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------------- 259 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------
Confidence 4678889999999999999999999998863 447888999999999999999999999999986
Q ss_pred CCCCCC-HHHHHHHHHHHHhhhhHHHH-HHHHHHHH
Q 007970 473 PPLKPD-EELLDALADICVRAAFFRKA-LEIVACME 506 (583)
Q Consensus 473 ~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 506 (583)
.|+ ...+..+..++.+.|++++| ...++.|.
T Consensus 260 ---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 260 ---YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp ---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 57888889999999999988 45666664
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=7.2e-07 Score=84.39 Aligned_cols=133 Identities=12% Similarity=0.022 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD--------------VLTYNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
+...+..+...+.+.|++++|+..|+...+...... ..+|..+..++.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577899999999999999999999999988653321 478888999999999999999999999998
Q ss_pred CCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCC
Q 007970 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202 (583)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (583)
. +.+...+..+..+|...|++++|...|+......
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------------------------------------------- 260 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------------------------------------------- 260 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------------
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------------------------------------
Confidence 6 6678889999999999999999999999887632
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 007970 203 PLLPKTFAPNSRIYTTLMKGYMNEGRVSDT-VRMLGAMRR 241 (583)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 241 (583)
+.+..++..+..++.+.|+.++| .+.|..|..
T Consensus 261 -------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 261 -------PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888888999999998888 445555543
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=2.6e-06 Score=67.50 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.++++++....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~------------ 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE------------ 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc------------
Confidence 4567788899999999999999999999863 446788999999999999999999999999876321
Q ss_pred CCCCCC----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 473 PPLKPD----EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 473 ~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
..++ ..+|..+..++...|++++|++.+++... ..|++.....+
T Consensus 75 --~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 75 --TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred --cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 1222 24677888999999999999999999875 45777655443
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=4.7e-06 Score=70.50 Aligned_cols=122 Identities=11% Similarity=0.144 Sum_probs=74.6
Q ss_pred ccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHH
Q 007970 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254 (583)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 254 (583)
+...|++++|...++..+. ..+.+..+|..+..+|...|++++|...|+..... .+.+...+
T Consensus 20 ~~~~~~~~~A~~~~~~al~--------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~ 81 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL----RGENAELY 81 (177)
T ss_dssp CC-----CCCCHHHHHHHH--------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HCSCHHHH
T ss_pred hhhccCHHHHHHHHHHHHH--------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHH
Confidence 3455667777777766551 12345667777777777777777777777776664 23345556
Q ss_pred HHHHHH-HHHcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 255 TTVVSA-LVKAGSM--DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 255 ~~ll~~-~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
..+..+ +...|++ ++|...++.+.+.. +.+...+..+..+|...|++++|...|+++++.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666 5566766 77777777766653 344566666666677777777777777666554
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=8.1e-06 Score=73.24 Aligned_cols=199 Identities=9% Similarity=-0.065 Sum_probs=140.5
Q ss_pred HHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHhCCCCCC---------
Q 007970 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV-------VSALVKAGSMDRARQVLAEMTRIGVPAN--------- 285 (583)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~~~~~~--------- 285 (583)
++ ..++...|.+.|.++... .+-....|..+ ...+.+.++..+++..+..... +.|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIG 88 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECC
T ss_pred cc-cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccC
Confidence 44 689999999999999986 34457778777 4555555555555555554443 1111
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007970 286 -------------RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352 (583)
Q Consensus 286 -------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 352 (583)
......+..++...|++++|.++|..+... .|+......+...+.+.+++++|+..|+......
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 233455677888999999999999888542 3544455566667889999999999998554431
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007970 353 IAPT--KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428 (583)
Q Consensus 353 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 428 (583)
.|. ...+..+..++...|++++|+..|++.... ...| ..........++.+.|+.++|..+|+++... .|+.
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~ 241 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEP 241 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCH
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH
Confidence 111 236777888899999999999999999752 2214 3346677778899999999999999999985 5664
Q ss_pred HHHHHH
Q 007970 429 ATYGSL 434 (583)
Q Consensus 429 ~~~~~l 434 (583)
.....|
T Consensus 242 ~~~~aL 247 (282)
T 4f3v_A 242 KVAAAL 247 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=3.7e-06 Score=66.48 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--------------- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------
Confidence 3456666777778888888888888877652 345677777788888888888888888888765
Q ss_pred CCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 473 PPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 473 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..++...|++++|...+++..+
T Consensus 68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 444 46777777888888888888888887764
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=1.9e-06 Score=69.97 Aligned_cols=97 Identities=9% Similarity=-0.072 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCC
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 471 (583)
+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++.+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 81 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-------------- 81 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------------
Confidence 44556677778888899999999998888752 346777888888888899999999999988876
Q ss_pred CCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 472 PPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 472 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..+|...|++++|.+.++...+
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444 46777888888899999999999988865
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=2.9e-06 Score=73.55 Aligned_cols=139 Identities=16% Similarity=0.048 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC--
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN-AS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI----GVP-- 283 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-- 283 (583)
...++..+...+...|++++|...+++....... +. .....++..+...+...|++++|...+++..+. +..
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4667788888888899999998888887663111 11 112456677777888888888888888876643 211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV----VSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
.....+..+...+...|++++|...+++.........+. .++..+...+...|++++|...+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 123456667777778888888888877765321111121 2345566666777777777777666543
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=1.6e-05 Score=71.32 Aligned_cols=187 Identities=10% Similarity=-0.070 Sum_probs=137.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCCC--------------
Q 007970 263 KAGSMDRARQVLAEMTRIGVPANRITYNIL-------LKGYCQQLQIDKAKELLREMADDAKIEPD-------------- 321 (583)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------- 321 (583)
..++.+.|.+.|..+.... |-....|..+ ...+...++..++...+...+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---CChhhhhhhhccCCcccc
Confidence 5799999999999999875 4566777766 4555555555555555554432 1221
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-
Q 007970 322 --------VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD- 392 (583)
Q Consensus 322 --------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 392 (583)
...+..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...+. . .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~ 169 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFL 169 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-Cccc
Confidence 2344556677889999999999999887653 54445555566788999999999999876552 1 111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 393 -IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN--VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 393 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|...|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34678889999999999999999999985433254 346667777899999999999999999987
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=0.00031 Score=64.94 Aligned_cols=189 Identities=8% Similarity=0.025 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHH
Q 007970 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ-PKLANK 378 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~ 378 (583)
+++++.+++.++... +.+..+|+.-...+...+ .+++++.++..+.+.. +-+...|+--.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 455666666655432 345555555555555555 3566666666666653 3345555555445555555 466666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRM--------------GLVEEAKRIIERMKENGFYPNVATYGSLANGISLA--- 441 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--- 441 (583)
.++.+.+ ..+.|...|+.....+.+. +.++++++.+.+..... +-|...|+.+-..+...
T Consensus 167 ~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 167 FTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 6666665 2345566666555555444 45788888888888752 44666776665555544
Q ss_pred --------CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHH---HHHhhhhHHHHHHHHHHHHHcC
Q 007970 442 --------RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALAD---ICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 442 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
+.++++++.++++.+. .||. -++..++. .....|..+++...+.++.+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~------------------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-- 303 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQEL------------------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-- 303 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--
T ss_pred cccchHHHHHHHHHHHHHHHHHhh------------------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--
Confidence 4578899999999876 6765 33333322 22245777888888888875
Q ss_pred CCCCHHH
Q 007970 510 IPPNKTK 516 (583)
Q Consensus 510 ~~p~~~~ 516 (583)
++|....
T Consensus 304 ~Dp~r~~ 310 (331)
T 3dss_A 304 VDPMRAA 310 (331)
T ss_dssp HCGGGHH
T ss_pred hCcchhh
Confidence 5666554
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.1e-05 Score=63.78 Aligned_cols=97 Identities=16% Similarity=0.079 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
..+......+...|++++|...|++..+ ..+.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4556666777788888888888888776 335567788888888888888888888888888752 3356778888888
Q ss_pred HHhcCCHhHHHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~ 457 (583)
+...|++++|+..|+++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888888776
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.7e-05 Score=61.39 Aligned_cols=102 Identities=11% Similarity=-0.070 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|+..++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 4566777788888888888888888887652 346777788888888888888888888888876
Q ss_pred CCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 473 PPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 473 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.| +...+..+..++...|++++|.+.+++..+ ..|+..
T Consensus 68 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 106 (118)
T 1elw_A 68 ---KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNP 106 (118)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred ---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCH
Confidence 44 457777888888888888888888888874 345443
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=2.3e-05 Score=65.21 Aligned_cols=98 Identities=11% Similarity=-0.045 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
...+..+...+...|++++|...|++..+ ..+.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566666677777778888777777766 234467777788888888888888888888887752 335677777888
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+|...|++++|+..|+++.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888776
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=1.5e-05 Score=66.43 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
+.+...+..+...+.+.|++++|++.|++.... .+.+...|..+..++...|++++|+..++..++.. +.+...+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAW 82 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 345677888889999999999999999998885 34467888888889999999999999999988865 5567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPD 321 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 321 (583)
..+..+|...|++++|...|++.++...-.++
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 88889999999999999999888775433344
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=9.3e-06 Score=64.33 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF--YPN----VATY 431 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~ 431 (583)
..+..+...+...|++++|...|+...+ ..+.+...+..+..++...|++++|...++++.+... .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4455666667777777777777777765 2345667777777778888888888888887765321 122 5677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+..++...|++++|.+.|+++.+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777888888888888888888775
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.2e-05 Score=63.58 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG--FYPN----VATYG 432 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~~ 432 (583)
.+..+...+.+.|++++|+..|++.++ -.|.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566666677777777777777665 234456677777777777777777777777766421 1111 23566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+..++...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6667777788888888888877765
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=1.8e-05 Score=63.41 Aligned_cols=101 Identities=14% Similarity=0.007 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 434 (583)
.+...+..+...+...|++++|...|+...+ ..+.+...|..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4566777777788888888888888888776 234567788888888888888888888888888753 3357788888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 435 ANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
..++...|++++|+..|+++.+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 888888899999998888888763
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=1.4e-05 Score=69.03 Aligned_cols=94 Identities=13% Similarity=-0.101 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
.+|..+..+|.+.|++++|+..+++..+. .+.+...+..+..+|...|++++|+..|+++.+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------- 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------------- 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------
Confidence 67788888899999999999999998876 2446778888888999999999999999998876
Q ss_pred CCCCC-HHHHHHHHHHHHhhhhHHHHH-HHHHHHH
Q 007970 474 PLKPD-EELLDALADICVRAAFFRKAL-EIVACME 506 (583)
Q Consensus 474 ~~~p~-~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 506 (583)
.|+ ..++..+..++...++.+++. ..+..|.
T Consensus 152 --~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 152 --NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp --STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554 477777888888888887777 4555553
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=7.8e-06 Score=66.22 Aligned_cols=99 Identities=12% Similarity=-0.024 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+...+..+...+.+.|++++|+..|+..... .+.+...|..+..++...|++++|...|+...+.. +.+...+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 91 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 4556777788888899999999999888875 34567788888888888999999999998888765 556777788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 292 LLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
+..+|...|++++|...|+..++.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888889999998888887654
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=1.1e-05 Score=63.16 Aligned_cols=93 Identities=15% Similarity=0.015 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCC
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (583)
+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------------ 80 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------ 80 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence 4556677888999999999999998752 347778888888899999999999999999876
Q ss_pred CCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 476 KPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 476 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..++.+.|++++|+..+++..+
T Consensus 81 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 81 DPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 554 47888888999999999999999999874
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=2.3e-05 Score=60.57 Aligned_cols=110 Identities=12% Similarity=-0.001 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
++..|..+...+...|+ +++|+..|++.... .+.+...+..+..++...|++++|...++...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN--IDDALQCYSEAIKL------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHccc--HHHHHHHHHHHHHH------------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34566667777777777 77787777777764 34466777777777777777777777777777654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
. .+...+..+..++...|++++|...+++..+.+ +.+...+..+
T Consensus 69 ~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 69 P-DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 2 245666677777777777777777777777654 3344444433
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=1.4e-05 Score=63.30 Aligned_cols=110 Identities=11% Similarity=0.008 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..++++.+....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------ 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE------------ 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc------------
Confidence 4567888899999999999999999998763 457788899999999999999999999999886421
Q ss_pred CCCCCC----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007970 473 PPLKPD----EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519 (583)
Q Consensus 473 ~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (583)
..++ ..++..+..++.+.|++++|.+.+++..+. .|++.....
T Consensus 71 --~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 71 --NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp --STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred --cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 1222 667888899999999999999999999874 456554443
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=3.7e-05 Score=62.44 Aligned_cols=103 Identities=9% Similarity=-0.084 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhcccc
Q 007970 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466 (583)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (583)
.+...+..+...+...|++++|++.|++..+. .|+ ...+..+..+|...|++++|+..++++.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------- 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------- 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---------
Confidence 45677777888888888888888888888764 455 567777777888888888888888888775
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 467 ADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 467 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.| +...+..+..+|...|++++|...+++..+ +.|+..
T Consensus 95 ---------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~ 133 (148)
T 2dba_A 95 ---------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNK 133 (148)
T ss_dssp ---------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCH
T ss_pred ---------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcH
Confidence 44 456777788888888888888888888875 345443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=2.2e-05 Score=62.93 Aligned_cols=104 Identities=10% Similarity=-0.026 Sum_probs=92.8
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
+.++..+..+...+...|++++|+..|+....... .+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45788999999999999999999999999988753 357889999999999999999999999999986 5678899999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRD 160 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 160 (583)
..++...|++++|...|+......|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999998876554
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=3.1e-05 Score=66.78 Aligned_cols=116 Identities=12% Similarity=0.024 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----------------VATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
...+..+...+.+.|++++|++.|++..+.. +.+ ...+..+..+|...|++++|+..++++.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456667777888888888888888887642 112 26788889999999999999999999998
Q ss_pred HhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhh
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 528 (583)
.. +.+...+..+..+|...|++++|.+.+++..+. .|+.......+..++...
T Consensus 117 ~~-----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 117 ID-----------------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HS-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH
T ss_pred hC-----------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHH
Confidence 62 334688889999999999999999999999863 455443333334444443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=9.1e-05 Score=72.83 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=31.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-------------HVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
...+.+.|++++|++.|..+.+......... ...+..+...|...|++++|.+.+..+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4566677777777777777766521110000 0124445555555555555555555544
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.6e-05 Score=74.99 Aligned_cols=171 Identities=9% Similarity=-0.066 Sum_probs=109.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCCHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRARG-IAPTKI----SYTTLMKAFALSSQPKLANKVFDEMLR----DPRVKVDIVA 395 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 395 (583)
+..+...|...|++++|.+++..+...- ..++.. +.+.+...+...|++++|..+++.... ......-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666777777776666654321 111111 122222233445777888777766543 1122223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCC
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKEN--GF--YP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~--g~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (583)
+..+...|...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++........
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--------- 208 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI--------- 208 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---------
Confidence 788899999999999999999987642 11 12 24578888889999999999999999887653210
Q ss_pred CCCCCCCC--HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 471 LPPPLKPD--EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 471 ~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+.+|. ...+..+...+...|++++|...+.+..+
T Consensus 209 ---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 209 ---YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 00112 24566677788889999999998887743
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.0019 Score=59.69 Aligned_cols=223 Identities=10% Similarity=0.012 Sum_probs=160.0
Q ss_pred HHhcCChh-HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 223 YMNEGRVS-DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS----------MDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 223 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
..+.|.++ +|+++++.+... .+-+...|+.--..+...+. +++++.+++.+.... |-+..+|+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34566655 899999999874 23334556544444433332 678999999998765 668888888
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 292 LLKGYCQQL--QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD-SAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 292 l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
-.-++...+ .+++++.+++.+++.. +.+..+|+.-...+...|. ++++++.+..+.... +-|...|+.....+.
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 877788877 4899999999998754 5678888888877888888 589999999999875 446777766665555
Q ss_pred hc--------------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC
Q 007970 369 LS--------------SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM-----------GLVEEAKRIIERMKENG 423 (583)
Q Consensus 369 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~g 423 (583)
.. +.++++++.+..... ..|-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-
Confidence 54 457889999998887 4567788887665555554 4588999999999975
Q ss_pred CCCCH-HHHHHHHH---HHHhcCCHhHHHHHHHHHHHH
Q 007970 424 FYPNV-ATYGSLAN---GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 424 ~~p~~-~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.||. ..+..++. +....|..+++..++.++++.
T Consensus 268 -~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 268 -EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred -CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4554 22222221 222467788899999999876
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=1.6e-05 Score=60.95 Aligned_cols=97 Identities=7% Similarity=-0.044 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA--NRITYN 290 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 290 (583)
..++..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...++...+.. +. +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 445556666666777777777777766654 23345566666666666666666666666666543 23 455566
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHh
Q 007970 291 ILLKGYCQQ-LQIDKAKELLREMAD 314 (583)
Q Consensus 291 ~l~~~~~~~-~~~~~A~~~~~~~~~ 314 (583)
.+..++... |++++|.+.++.+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 666666666 666666666666654
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1.7e-05 Score=60.78 Aligned_cols=98 Identities=13% Similarity=0.006 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP--NVATYGSL 434 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l 434 (583)
...+..+...+...|++++|...|+++.+ ..+.+...+..+..++...|++++|.+.+++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44555666667777777777777777765 234456677777777777788888888887777652 23 46677777
Q ss_pred HHHHHhc-CCHhHHHHHHHHHHHH
Q 007970 435 ANGISLA-RKPGEALLLWKEIKER 457 (583)
Q Consensus 435 ~~~~~~~-g~~~~a~~~~~~~~~~ 457 (583)
..++... |++++|++.++++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 8888888887777654
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=6.8e-05 Score=60.81 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcC----HHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD----TAAYNAVLNACANLGKPKKFLQLFDQMH 85 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 85 (583)
...|..+...+...|+ +++|+..|++..+ ..|+ ...+..+..+|...|++++|+..++...
T Consensus 28 ~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~-------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 28 VEQLRKEGNELFKCGD--YGGALAAYTQALG-------------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp HHHHHHHHHHHHTTTC--HHHHHHHHHHHHT-------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--HHHHHHHHHHHHH-------------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3444444444444444 5555555555443 1222 3444445555555555555555555544
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 86 EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 86 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
+... .+...+..+..++...|++++|...|++..+.
T Consensus 93 ~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 93 EKDG-GDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHTS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhCc-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4321 13344444444555555555555555555444
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.14 E-value=1.8e-05 Score=61.93 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
.+..+...+.+.|++++|+..|+...+... .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 456677888999999999999999998653 367888899999999999999999999999986 567889999999999
Q ss_pred cCCChHHHHHHHHHHHhhhHH
Q 007970 140 GFGDLEIAETIVQAMREGRRD 160 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~ 160 (583)
..|++++|...++...+..|+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999998876554
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=4e-05 Score=63.24 Aligned_cols=137 Identities=14% Similarity=0.033 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEAKRIIERMKENGF-YPN----VA 429 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~ 429 (583)
++..+...+...|++++|...+++..+.....++ ..++..+...+...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555556666666666666655431000011 24667777888888888888888887764210 111 34
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+..+...+...|++++|...+++..+..... +..+. ..++..+..++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc------------cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66777788889999999999999887653210 00111 35677788899999999999999998764
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=0.0001 Score=58.11 Aligned_cols=92 Identities=13% Similarity=-0.005 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNV---ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
..+...+.+.|++++|.+.|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---------------- 68 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---------------- 68 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------------
Confidence 345566777888888888888877642 1222 46667777788888888888888888776
Q ss_pred CCCCC----HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 474 PLKPD----EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 474 ~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..++.+.|++++|...++++.+
T Consensus 69 --~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 69 --YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp --CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333 45667777888888888888888888865
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=4.7e-05 Score=63.15 Aligned_cols=102 Identities=16% Similarity=-0.013 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------C----------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKEN-------G----------FYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
..+......+.+.|++++|+..|.+.++. . -+.+...|..+..+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555666667777777777777766543 0 011235677788888888888888888888887
Q ss_pred HhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
. .|+ ...|..+..+|...|++++|...+++..+ +.|+..
T Consensus 92 ~------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 92 R------------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp H------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred c------------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 6 444 57788888888888889988888888875 456554
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=2e-05 Score=78.28 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=89.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 444 (583)
..+.+.|++++|.+.|++..+ ..+.+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 345677888899998888877 244568888899999999999999999999998863 34677888888999999999
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHH--HHhhhhHHHHHHHHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADI--CVRAAFFRKALEIVA 503 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~--~~~~g~~~~A~~~~~ 503 (583)
++|++.|+++.+. .|+. ..+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH------------------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998876 3432 444445444 888899999999988
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=0.00015 Score=57.22 Aligned_cols=93 Identities=13% Similarity=-0.005 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDI---VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN---VATYGSLA 435 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 435 (583)
.+...+...|++++|...|+.+.+. .+.+. ..+..+..++.+.|++++|...|+++.+.. +.+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 3445566677777777777777652 12222 466667777777788888888777777642 222 45666677
Q ss_pred HHHHhcCCHhHHHHHHHHHHHH
Q 007970 436 NGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.++...|++++|+..|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777788888888888877765
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=7.7e-05 Score=73.72 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------------- 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------------- 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 5678888999999999999999999998863 446788899999999999999999999999864
Q ss_pred CCCCCCH-HHHHHHHHHHHhhhhHHHHHH-HHHHH
Q 007970 473 PPLKPDE-ELLDALADICVRAAFFRKALE-IVACM 505 (583)
Q Consensus 473 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~-~~~~~ 505 (583)
.|+. ..+..+..++.+.|+++++.+ .++.|
T Consensus 381 ---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 381 ---NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ---C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 678888888989999888764 34444
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=0.00013 Score=72.16 Aligned_cols=115 Identities=12% Similarity=-0.034 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN---------------VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...|..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4566777778888888888888888887642 112 578889999999999999999999999987
Q ss_pred hhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhh
Q 007970 458 CEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 528 (583)
.| +...+..+..+|...|++++|+..|++..+ +.|+.......+..++.+.
T Consensus 347 ------------------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 347 ------------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp ------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHH
T ss_pred ------------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence 44 468899999999999999999999999985 5666553333324444443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=6.4e-05 Score=71.81 Aligned_cols=62 Identities=15% Similarity=-0.046 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+|..+..+|.+.|++++|+..++++++. .|+ ...+..+..+|.+.|++++|++.+++..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI------------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh------------------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345566666666666666666666666643 333 3566666666666666666666666665
Q ss_pred H
Q 007970 507 E 507 (583)
Q Consensus 507 ~ 507 (583)
+
T Consensus 335 ~ 335 (370)
T 1ihg_A 335 E 335 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=0.00012 Score=60.62 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45678888889999999999999999988763 446778888888999999999999999998876
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=6.5e-05 Score=61.92 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
..+|..+...+...|+ +++|+..+++..+......+ ......++..+...+...|++++|...++...+...
T Consensus 9 ~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN--FRDAVIAHEQRLLIAKEFGD------KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4578888889999998 99999999999886433211 111235888999999999999999999999765311
Q ss_pred C-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHh----CCC-cchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 90 K-PD----VLTYNVMIKLCARASRKHLLVFVLERILEM----GIT-LCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 90 ~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
. .+ ..++..+...+...|++++|.+.+++..+. +.+ .....+..+..++...|++++|.+.+++..+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0 11 446777888899999999999999887754 111 1245677888999999999999999988765
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=0.00015 Score=58.60 Aligned_cols=111 Identities=19% Similarity=0.021 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhh
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN--------V-----ATYGSLANGISLARKPGEALLLWKEIKERCEV 460 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 460 (583)
..+......+.+.|++++|++.|++.++. .|+ . ..|..+..++.+.|++++|+..+++.++.+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34555666777888888888888888764 333 2 38888899999999999999999999875211
Q ss_pred hhccccCCCCCCCCCCCCH-HHH----HHHHHHHHhhhhHHHHHHHHHHHHH-----cCCCCCHHHH
Q 007970 461 KKEGVNADSDLPPPLKPDE-ELL----DALADICVRAAFFRKALEIVACMEE-----HGIPPNKTKY 517 (583)
Q Consensus 461 ~~~~~~~~~~~~~~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 517 (583)
.. .+.|+. ..| .....++...|++++|+..|++..+ .++.+.....
T Consensus 90 ~~-----------e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 RG-----------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HC-----------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cc-----------cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 00 237765 778 8899999999999999999999964 4455544433
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=0.00016 Score=69.14 Aligned_cols=139 Identities=11% Similarity=-0.000 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 402 (583)
..+..+...+.+.|++++|+..|++..+. .+.. ..... .....+ ..+.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~-------~~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAE-------DADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSC-------HHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccC-------hHHHHH--HHHHHHHHHHHHHHH
Confidence 44666666677777777777777766542 0000 00001 111111 112345778888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EEL 481 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 481 (583)
|.+.|++++|++.+++.++.. +.+...+..+..+|...|++++|+..|+++.+. .|+ ...
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------------------~P~~~~~ 343 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI------------------APEDKAI 343 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHH
Confidence 999999999999999999753 346778888999999999999999999999876 554 567
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEI 501 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~ 501 (583)
+..+..++...++.+++.+.
T Consensus 344 ~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 344 QAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888777653
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=2.5e-05 Score=60.68 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=73.6
Q ss_pred hcCCcchHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHH
Q 007970 70 NLGKPKKFLQLFDQMHEFGA--KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147 (583)
Q Consensus 70 ~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 147 (583)
..|++++|+..|++..+.+. ..+...+..+..++...|++++|+..|++..+.. +.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999998641 1245678888999999999999999999999986 56788899999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 007970 148 ETIVQAMREGRRDVC 162 (583)
Q Consensus 148 ~~~~~~~~~~~~~~~ 162 (583)
...++......|+..
T Consensus 81 ~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 81 VELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCcH
Confidence 999998887655433
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.94 E-value=1e-05 Score=80.44 Aligned_cols=125 Identities=10% Similarity=-0.043 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 007970 13 WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92 (583)
Q Consensus 13 ~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 92 (583)
|..+...+.+.|+ +++|+..|++..+. .+.+..+|..+..+|.+.|++++|++.+++..+... .+
T Consensus 9 ~~~lg~~~~~~g~--~~~A~~~~~~Al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~ 73 (477)
T 1wao_1 9 LKTQANDYFKAKD--YENAIKFYSQAIEL------------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KY 73 (477)
T ss_dssp SSSSSSSTTTTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TC
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHh------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CC
Confidence 3344455667777 99999999999885 445689999999999999999999999999998753 36
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH--HHcCCChHHHHHHHHH
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA--YVGFGDLEIAETIVQA 153 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 153 (583)
..+|..+..++...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7788889999999999999999999999875 4455566655555 7777888888877664
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=3.1e-05 Score=60.15 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=58.6
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 305 (583)
.|++++|+..|++..+... ..+.+...+..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 5677778888887776410 012234567777777777888888888888777664 44567777777777788888888
Q ss_pred HHHHHHHHhcC
Q 007970 306 KELLREMADDA 316 (583)
Q Consensus 306 ~~~~~~~~~~~ 316 (583)
+..+++.+...
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88777776543
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=0.00032 Score=69.19 Aligned_cols=132 Identities=14% Similarity=-0.006 Sum_probs=97.4
Q ss_pred HHHhcCCHHHHHHHHHHHhcCC--CCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHH
Q 007970 366 AFALSSQPKLANKVFDEMLRDP--RVK---V-DIVAWNMLVEGYCRMGLVEEAKRIIERMKE-----NG-FYPN-VATYG 432 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~--~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~-~~~~~ 432 (583)
.+...|++++|+.++++..+.. -+. | ...+++.|..+|...|++++|+.++++.++ .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456788999988887765411 111 2 246789999999999999999999998764 22 1233 34788
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|...|...|++++|..+++++.+..... .| .-.|+. .+...+..++...|++++|+.+++.+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~-lG---------~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVT-HG---------PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC---------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH-hC---------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764321 00 113444 5566677788899999999999999976
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.87 E-value=0.00026 Score=57.19 Aligned_cols=102 Identities=11% Similarity=-0.061 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHh----
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP------D-----VLTYNVMIKLCARASRKHLLVFVLERILEM---- 122 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 122 (583)
...+......+.+.|++++|+..|+...+..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4567778888899999999999999998864331 2 238889999999999999999999999987
Q ss_pred ---CCCcchhHH----HHHHHHHHcCCChHHHHHHHHHHHhhhHH
Q 007970 123 ---GITLCMTTF----QSLVAAYVGFGDLEIAETIVQAMREGRRD 160 (583)
Q Consensus 123 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 160 (583)
. +.+...| .....++...|++++|+..|+...+..|+
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5 4466788 88999999999999999999999876543
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.80 E-value=0.00082 Score=51.61 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
.|...|++..+ ..+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777766 345567888888888889999999999999888753 345678888888888899999999999888
Q ss_pred HHH
Q 007970 455 KER 457 (583)
Q Consensus 455 ~~~ 457 (583)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00022 Score=70.32 Aligned_cols=147 Identities=10% Similarity=-0.019 Sum_probs=107.4
Q ss_pred CCCCchHHHHHHHH----------HHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCc
Q 007970 5 GYLPHVKAWSTVVS----------RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKP 74 (583)
Q Consensus 5 g~~p~~~~~~~li~----------~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 74 (583)
+..|+..++..++. .+...|+ +++|+.++++.++...+... ...+....+++.|..+|...|++
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~--~~eA~~l~~~aL~~~~~~lg----~~Hp~~a~~~~nLa~~y~~~g~~ 367 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGL--YHEVVKLCRECLEKQEPVFA----DTNLYVLRLLSIASEVLSYLQAY 367 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHTTTBC----TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHhcCH
Confidence 33456655554432 3556777 99999999999886443211 12233467999999999999999
Q ss_pred chHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHh-----C--CCcchhHHHHHHHHHHc
Q 007970 75 KKFLQLFDQMHEF-----GA-KPD-VLTYNVMIKLCARASRKHLLVFVLERILEM-----G--ITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 75 ~~A~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~ 140 (583)
++|..++++.... |. .|+ ..+++.|...|...|++++|..++++..+. | .+....+...+..++..
T Consensus 368 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 368 EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999987653 32 133 456889999999999999999999887742 3 22234456677788888
Q ss_pred CCChHHHHHHHHHHHhh
Q 007970 141 FGDLEIAETIVQAMREG 157 (583)
Q Consensus 141 ~g~~~~A~~~~~~~~~~ 157 (583)
.+.+++|+.++..+.+.
T Consensus 448 ~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 448 LRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988763
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=0.00015 Score=58.48 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=75.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP----------GEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|+++++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------------- 75 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------------- 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh----------------
Confidence 45567888888888887753 44677777777777777654 5999999999986
Q ss_pred CCCCCH-HHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 474 PLKPDE-ELLDALADICVRAA-----------FFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 474 ~~~p~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
.|+. ..|..+..+|...| ++++|++.|++..+ +.|+...|...
T Consensus 76 --dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~a 130 (158)
T 1zu2_A 76 --DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKS 130 (158)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred --CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 7764 89999999998875 89999999999986 67887777554
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=8.6e-05 Score=70.10 Aligned_cols=131 Identities=7% Similarity=-0.074 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHH------------------HHHHHHHHHHhc
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA------------------AYNAVLNACANL 71 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~ 71 (583)
...|..+...+.+.|+ +++|+..|++.++. .|+.. .|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~--~~~A~~~y~~Al~~-------------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEK--LEEAMQQYEMAIAY-------------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSC--CHHHHHHHHHHHHH-------------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHH-------------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4467777788888888 99999999998874 33322 566666666666
Q ss_pred CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH-HHcCCChHHHHHH
Q 007970 72 GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA-YVGFGDLEIAETI 150 (583)
Q Consensus 72 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 150 (583)
|++++|+..++...+... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..+ ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665432 245566666666666666666666666665543 2233344444433 2223444555555
Q ss_pred HHHHHhh
Q 007970 151 VQAMREG 157 (583)
Q Consensus 151 ~~~~~~~ 157 (583)
|..+...
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 5555443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=9.2e-05 Score=56.52 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+...+..+...+...|++++|+..|+++.+. .| +...+..+..++.+.|++++|++.+++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA------------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567778888888999999999999998876 44 4578888888999999999999999998
Q ss_pred HHcCCCCCH
Q 007970 506 EEHGIPPNK 514 (583)
Q Consensus 506 ~~~~~~p~~ 514 (583)
.+ +.|+.
T Consensus 65 l~--~~p~~ 71 (111)
T 2l6j_A 65 LR--YTSTA 71 (111)
T ss_dssp HT--SCSST
T ss_pred HH--hCCCc
Confidence 75 45553
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.71 E-value=9.8e-05 Score=69.69 Aligned_cols=148 Identities=9% Similarity=-0.028 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
...+..+...+.+.|++++|...|++.+.. .|+... +...++..++...+. ...+..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 344555566666677777777777776543 233221 122223333322211 136777888
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCC
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANG-ISLARK 443 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~ 443 (583)
++.+.|++++|...+++..+ ..+.+...|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 88889999999999988877 34557788888889999999999999999888754 343 3344444444 234556
Q ss_pred HhHHHHHHHHHHHH
Q 007970 444 PGEALLLWKEIKER 457 (583)
Q Consensus 444 ~~~a~~~~~~~~~~ 457 (583)
.+++...|+++...
T Consensus 315 ~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 315 YQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhCC
Confidence 77777888877654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=3.2e-05 Score=59.22 Aligned_cols=93 Identities=12% Similarity=0.012 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCC
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 471 (583)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------------- 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------
Confidence 34566777778888888888888888887652 346677777888888888888888888888754
Q ss_pred CCCCCCC-------HHHHHHHHHHHHhhhhHHHHHHHHH
Q 007970 472 PPPLKPD-------EELLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 472 ~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
.|+ ...+..+..++...|++++|...++
T Consensus 68 ----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 68 ----TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp ----CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 454 3444555555666665555544333
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=0.0035 Score=63.41 Aligned_cols=172 Identities=6% Similarity=-0.026 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-
Q 007970 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ----------IDKAKELLREMADDAKIEPDVVSYNILIDGFILID- 336 (583)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 336 (583)
++|++.++.+.... +-+..+|+.--.++...++ ++++++.++.+++.. +.+..+|..-...+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccc
Confidence 45556666555543 3344455544444444444 677777777776543 456667777766777777
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc--------
Q 007970 337 -DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS-QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM-------- 406 (583)
Q Consensus 337 -~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 406 (583)
+++++++.++++.+.. +-+...|+.-...+.+.| .++++.+.++++.+ ..+.+...|+....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhcccccccc
Confidence 5678888888877764 335666666666666777 77888888888776 3456777777777666653
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 007970 407 ------GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446 (583)
Q Consensus 407 ------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 446 (583)
+.++++++.++++.... +-|...|..+-..+.+.+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999998753 3467788888877877777544
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.63 E-value=0.0055 Score=61.94 Aligned_cols=172 Identities=7% Similarity=-0.008 Sum_probs=115.6
Q ss_pred CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcC
Q 007970 72 GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR----------KHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141 (583)
Q Consensus 72 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (583)
...++|++.++.+...+. -+..+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344677899999888654 245667766666666666 788888888888875 55777888777777788
Q ss_pred C--ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 142 G--DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 142 g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
+ +++++++.++.+.+.+ +.+..+|+.-
T Consensus 121 ~~~~~~~el~~~~k~l~~d---------------------------------------------------~~N~~aW~~R 149 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD---------------------------------------------------ERNFHCWDYR 149 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------------------------------------------------TTCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc---------------------------------------------------cccccHHHHH
Confidence 8 5688888888887642 4667778777
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhCCCCC
Q 007970 220 MKGYMNEG-RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA--------------GSMDRARQVLAEMTRIGVPA 284 (583)
Q Consensus 220 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~ 284 (583)
..++.+.| .++++++.++++.+. .+-+...|+.....+.+. +.++++++.+..+.... |-
T Consensus 150 ~~~l~~l~~~~~~el~~~~~~I~~----~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~ 224 (567)
T 1dce_A 150 RFVAAQAAVAPAEELAFTDSLITR----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PN 224 (567)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTT----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SS
T ss_pred HHHHHHcCCChHHHHHHHHHHHHH----CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CC
Confidence 77777777 788888888887765 445677777776666553 23455555555555443 33
Q ss_pred CHHHHHHHHHHHHhcCC
Q 007970 285 NRITYNILLKGYCQQLQ 301 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~ 301 (583)
+...|..+-..+.+.++
T Consensus 225 ~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 225 DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSHHHHHHHHHHSCCCC
T ss_pred CccHHHHHHHHHhcCCC
Confidence 44555544444444443
No 201
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.59 E-value=7.4e-07 Score=83.80 Aligned_cols=265 Identities=12% Similarity=0.085 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|+.+..+.-..++ ..+|+..|-+. .|+..|..+|.+..+.|.+++-++.+...++..-
T Consensus 54 p~VWs~LgkAqL~~~~--v~eAIdsyIkA-----------------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k 114 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGM--VKEAIDSYIKA-----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 114 (624)
T ss_dssp CCCSSSHHHHTTTSSS--CTTTTTSSCCC-----------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC
T ss_pred ccHHHHHHHHHHccCc--hHHHHHHHHhC-----------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 3457777777776666 77776654221 2555688888888899999999988888776543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 169 (583)
+| ..=+.|+-+|++.++..+..+++ ..||..-...+..-|...|.++.|.-+|..+.. +.
T Consensus 115 e~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----------~a 174 (624)
T 3lvg_A 115 ES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----------FG 174 (624)
T ss_dssp ST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----------CT
T ss_pred cc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----------HH
Confidence 33 33457888899888876654433 246777777788888888998888888776644 45
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 249 (583)
..+.++...|++..|.+.-.+ ..++.||-.+-.+|...+.+.-|.-.--.+.-. +
T Consensus 175 kLAstLV~L~~yq~AVdaArK-------------------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh------a 229 (624)
T 3lvg_A 175 RLASTLVHLGEYQAAVDGARK-------------------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH------A 229 (624)
T ss_dssp TTSSSSSSCSGGGSSTTTTTT-------------------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC------S
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------------------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc------H
Confidence 556677777777777665544 356778888888998888887765544443321 2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------CHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP------DVV 323 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~ 323 (583)
| ....++..|-..|-+++.+.+++.-.... .....+|+-|.-.|++- +.++..+.++....+-+++. ...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 12335666777788888888887766432 45667777777777654 45555555544322222221 123
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 007970 324 SYNILIDGFILIDDSAGAL 342 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~ 342 (583)
.|.-++-.|..-.+++.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 4666666666666666554
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00038 Score=53.58 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310 (583)
Q Consensus 231 ~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 310 (583)
+|++.|+...+. .+.+...+..+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...|+
T Consensus 3 ~a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666654 33456677777777777777777777777777654 4456667777777777777777777777
Q ss_pred HHHh
Q 007970 311 EMAD 314 (583)
Q Consensus 311 ~~~~ 314 (583)
+...
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.00097 Score=49.71 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+.+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4467778888888888999999999998888753 335667888888888899999999888888765
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.00091 Score=48.54 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566777777888888888888888877652 335667777788888888888888888888765
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.47 E-value=0.0052 Score=48.94 Aligned_cols=110 Identities=7% Similarity=-0.065 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEE 411 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 411 (583)
+++++|+..|++..+.| .|... +...|...+..++|..+|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 34566666666666665 22222 444555555666677777666552 355566666666666 567777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHH
Q 007970 412 AKRIIERMKENGFYPNVATYGSLANGISL----ARKPGEALLLWKEIKER 457 (583)
Q Consensus 412 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 457 (583)
|.++|++..+.| +...+..|...|.. .+++++|+.+|++..+.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 777777776654 45566666666666 66777777777766654
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.45 E-value=0.0044 Score=49.38 Aligned_cols=112 Identities=9% Similarity=-0.124 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhH
Q 007970 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKPGE 446 (583)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 446 (583)
+++++|..+|++..+. + .+... |...|...+..++|.++|++..+.| +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4678999999998874 3 33333 7777888888999999999999875 67788888888887 889999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHcCC
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR----AAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 510 (583)
|+.+|++..+. -+...+..|...|.. .+++++|.+++++..+.|.
T Consensus 80 A~~~~~~Aa~~-------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGL-------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHT-------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999863 356778888889988 8999999999999988663
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=0.00049 Score=55.41 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=70.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL----------VEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+.+.+++|.+.++...+ --+.+...|..+..++...++ +++|+..|++.++.. +-+...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 44556677777777665 234566666666666666655 458888888888752 23567888888888
Q ss_pred Hhc-----------CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH
Q 007970 439 SLA-----------RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487 (583)
Q Consensus 439 ~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 487 (583)
... |++++|++.|+++++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l------------------~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE------------------QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHH
Confidence 776 4899999999999986 888766655444
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.42 E-value=0.0018 Score=46.88 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...+..+...+...|++++|++.|++.... .+.+...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 456666777777777777777777777664 23345666666677777777777777777766543 3344555555
Q ss_pred HHHHH
Q 007970 293 LKGYC 297 (583)
Q Consensus 293 ~~~~~ 297 (583)
..++.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.0011 Score=49.30 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
+.+..++..+..+|...|++++|++.|++..+. .+.+...|..+..++...|++++|.+.++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334555555555555555555555555555553 22234445555555555555555555555544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.08 E-value=0.0031 Score=46.66 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HH-HHHHHHHHHHhhhhHHHHHHHHHHHHHcCCC
Q 007970 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EE-LLDALADICVRAAFFRKALEIVACMEEHGIP 511 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 511 (583)
....+...|++++|+..++++.+. .|+ .. .+..+..+|...|++++|.+.+++..+. .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT------------------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--N 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH------------------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH------------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 455678899999999999999986 555 46 8889999999999999999999999863 4
Q ss_pred CCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 512 PNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 512 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
|+....... +.++++...+++.
T Consensus 66 p~~~~~~~~-------------------------~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 66 PDSPALQAR-------------------------KMVMDILNFYNKD 87 (99)
T ss_dssp TTSTHHHHH-------------------------HHHHHHHHHHCCT
T ss_pred CCcHHHHHH-------------------------HHHHHHHHHHHHH
Confidence 554322111 5777888888776
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.048 Score=50.68 Aligned_cols=68 Identities=10% Similarity=-0.018 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.++++...
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 346678888888777777899999999999999874 78888888888889999999999999999876
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.0075 Score=58.40 Aligned_cols=93 Identities=10% Similarity=-0.087 Sum_probs=72.1
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 405 RMGLVEEAKRIIERMKEN---GFYPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
..|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++++..... -| .-.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~-lG---------~~Hp 379 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH-YP---------VYSL 379 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SC---------SSCH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH-cC---------CCCh
Confidence 357899999999887642 12232 3578899999999999999999999988764321 00 2255
Q ss_pred CH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 478 DE-ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 478 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+. .+++.|..+|...|++++|+.++++..+
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 65 7899999999999999999999999853
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.90 E-value=0.057 Score=57.64 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+.....|. ++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 3556777788888888888888887776643 33445555556666665555544444431 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
....+|.+.|++++|++++.++
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHc
Confidence 3333445555555555555433
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.85 E-value=0.029 Score=52.07 Aligned_cols=74 Identities=11% Similarity=-0.044 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
+.+..++..+...+...|++++|+..++++... .|+...|..+..++.-.|++++|.+.+++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L------------------n~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL------------------EMSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 567888888887788889999999999999987 68888888888999999999999999999
Q ss_pred HHHcCCCCCHHHHH
Q 007970 505 MEEHGIPPNKTKYK 518 (583)
Q Consensus 505 ~~~~~~~p~~~~~~ 518 (583)
... +.|...+|.
T Consensus 336 Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 336 AFN--LRPGANTLY 347 (372)
T ss_dssp HHH--HSCSHHHHH
T ss_pred HHh--cCCCcChHH
Confidence 876 567777764
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.80 E-value=0.019 Score=55.68 Aligned_cols=111 Identities=9% Similarity=0.023 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENG---FYPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.+++++++..... .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~-l--------- 363 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF-F--------- 363 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-S---------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH-c---------
Confidence 445667899999999999987531 2232 3578889999999999999999999988764321 0
Q ss_pred CCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH---cCCCCCHHHHHHH
Q 007970 473 PPLKPDE-ELLDALADICVRAAFFRKALEIVACMEE---HGIPPNKTKYKKI 520 (583)
Q Consensus 473 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~~ 520 (583)
+.-.|+. .+++.|...|...|++++|+.++++..+ .-+-|+......+
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 0225555 7888999999999999999999999853 2233554444333
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.65 E-value=0.014 Score=42.84 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVA-TYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
....+.+.|++++|++.++++.+.. +.+.. .+..+..++...|++++|++.|+++.+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455667778888888888777652 33455 6777777777888888888888887765
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.64 E-value=0.017 Score=41.99 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHH
Q 007970 425 YPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALE 500 (583)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 500 (583)
+.++..+..+..++...++ .++|..+++++.+. .|+. .....+...+.+.|++++|..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------------------dp~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------------------EPYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------------------CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567778888888765554 68999999999987 6654 788888889999999999999
Q ss_pred HHHHHHHc
Q 007970 501 IVACMEEH 508 (583)
Q Consensus 501 ~~~~~~~~ 508 (583)
.|+++.+.
T Consensus 65 ~w~~~l~~ 72 (93)
T 3bee_A 65 TWVLLLDS 72 (93)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99999863
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.56 E-value=0.032 Score=44.38 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC--CHHHHH
Q 007970 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLAR---KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP--DEELLD 483 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~ 483 (583)
...+.+-|.+..+.| .++..+.-.+..++.+.+ +.++++.+++...+.. .| ....+.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----------------~p~~~rd~lY 75 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----------------SKEEQRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----------------CccchHHHHH
Confidence 455666677666665 378888888888999988 6669999999988861 25 346777
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
.|.-+|.+.|++++|.+.++.+.+ +.|+..--.
T Consensus 76 ~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n~QA~ 108 (152)
T 1pc2_A 76 YLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHH
Confidence 788899999999999999999986 567654333
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.49 E-value=0.013 Score=56.79 Aligned_cols=63 Identities=6% Similarity=-0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADD-----AKIEPDV-VSYNILIDGFILIDDSAGALTFFNEMR 349 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 349 (583)
.+++.|..+|...|++++|+.++++.+.. ....|++ .+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34444555555555555555554444321 1112222 345555555555555555555555543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.45 E-value=0.034 Score=53.90 Aligned_cols=95 Identities=6% Similarity=-0.068 Sum_probs=65.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCCH-
Q 007970 256 TVVSALVKAGSMDRARQVLAEMTRIG---VPA----NRITYNILLKGYCQQLQIDKAKELLREMADD-----AKIEPDV- 322 (583)
Q Consensus 256 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~- 322 (583)
..+..+.+.|++++|+.++++.++.. +.+ ...+++.+..+|...|++++|+.++++++.. ....|+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33555667788888888888877531 112 2456777888888888888888888766541 2223433
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4678888888888888888888887654
No 221
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.20 E-value=1.6 Score=46.05 Aligned_cols=221 Identities=12% Similarity=0.046 Sum_probs=106.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcccCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhCCC--C-----CCHHHHHH
Q 007970 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV--TYTTVVSALVKAGSMDRARQVLAEMTRIGV--P-----ANRITYNI 291 (583)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~-----~~~~~~~~ 291 (583)
-+....|+.++++.++....... ...+.. .=..+.-+....|..+.+..++...+...- . +....-.+
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~---~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGS---RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTS---CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhcccc---CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 34556777777777766554310 012222 222233334455555567776666554321 0 11111122
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 292 L--LKGYCQQLQIDKAKELLREMADDAKIEPDVVS--YN--ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 292 l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
+ ..+|.-.++ +++.+.+..++.. .+... .. .|...+...|+.+....++..+.... +......+.-
T Consensus 459 LGLGla~~GS~~-eev~e~L~~~L~d----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aal 530 (963)
T 4ady_A 459 LGIGLAAMGSAN-IEVYEALKEVLYN----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAV 530 (963)
T ss_dssp HHHHHHSTTCCC-HHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHH
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHH
Confidence 2 222222333 3455555555442 12211 12 22333456677777777777666531 3333333333
Q ss_pred --HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 366 --AFALSSQPKLANKVFDEMLRDPRVKVDIVAW--NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 366 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
++...|+.+.+..+.+.+... ..|....- .++.-+|+-.|+.....+++..+.+. ...+......+.-++...
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTS
T ss_pred HHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhcc
Confidence 344668888888887777652 12222211 23344566778877777788887764 222232222233334446
Q ss_pred CCHhHHHHHHHHHH
Q 007970 442 RKPGEALLLWKEIK 455 (583)
Q Consensus 442 g~~~~a~~~~~~~~ 455 (583)
|+.+.+.+++..+.
T Consensus 608 g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 608 RDYTTVPRIVQLLS 621 (963)
T ss_dssp SSCSSHHHHTTTGG
T ss_pred CCHHHHHHHHHHHH
Confidence 66665555554443
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.80 E-value=0.094 Score=38.95 Aligned_cols=68 Identities=6% Similarity=-0.048 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG------AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
.++.-+..|...+.+.|++..|..+|+...+.- -.+....+..+..++.+.|+++.|+..++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 356667788999999999999999999887641 12356678888888999999999999999888864
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.79 E-value=0.22 Score=36.03 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
++|..++++.++.. +.+......+...+.+.|++++|...|+.+
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444333332 223333333333334444444444444443
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.78 E-value=0.15 Score=37.83 Aligned_cols=66 Identities=15% Similarity=-0.016 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG------FYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..-+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|++++|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44555667777777888888888877766420 1234567777888888888888888888888765
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.65 Score=37.89 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=73.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (583)
....|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 35678888888887665 3677888888888888888888888888753 4556666777888877
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 412 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
-.++-+.....| -++.....+...|++++++++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 776666665554 2444455566788888888887654
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=0.45 Score=50.61 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
..++..+.+.|.++.|.++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHH
Confidence 555555666666666665442110 1122344566666666664333 345666666666666
Q ss_pred cCCHHHHHHHHHHH
Q 007970 335 IDDSAGALTFFNEM 348 (583)
Q Consensus 335 ~~~~~~a~~~~~~m 348 (583)
.++++.|.+.|..+
T Consensus 694 ~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 694 RFNFKLAIEAFTNA 707 (814)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc
Confidence 67777666666654
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.7 Score=37.70 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=57.6
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339 (583)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 339 (583)
.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.. | +..+.-.|...|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCHH
Confidence 344567777777666554 245667777777777777777777776652 1 333333444556665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 383 (583)
+...+-+.....| -++.....+...|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555444444433 1344444455566666666666544
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.54 E-value=0.22 Score=39.55 Aligned_cols=66 Identities=14% Similarity=-0.000 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 391 VDIVAWNMLVEGYCRMG---LVEEAKRIIERMKENGFYP--NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 391 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45555556666666655 4446666666665542 23 2333444455566666666666666666654
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.10 E-value=0.33 Score=43.19 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--
Q 007970 409 VEEAKRIIERMKENGFYPN---VATYGSLANGISLA-----RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-- 478 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 478 (583)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.++|+++++. .|+
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L------------------nP~~~ 238 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY------------------CSAHD 238 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH------------------CCTTC
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh------------------CCCCC
Confidence 56778888888874 566 55788888888884 9999999999999986 673
Q ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCCC--CCHHHH
Q 007970 479 EELLDALADICVR-AAFFRKALEIVACMEEHGIP--PNKTKY 517 (583)
Q Consensus 479 ~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~--p~~~~~ 517 (583)
..++....+.+++ .|+.+++.+.+++.+..... |+....
T Consensus 239 id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 239 PDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHH
Confidence 5777788888877 49999999999999986655 554433
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.09 E-value=0.23 Score=44.23 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=86.3
Q ss_pred chHHHHHHHH-HHHhc--CC----CChhhhHHhHHHHHHHHhhcCCccccccCCcC---HHHHHHHHHHHHh-----cCC
Q 007970 9 HVKAWSTVVS-RLAAS--GD----DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD---TAAYNAVLNACAN-----LGK 73 (583)
Q Consensus 9 ~~~~~~~li~-~~~~~--g~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~ 73 (583)
....|..++. .+... |. .....|..++++.++ +.|+ -..|..+...|.+ .|+
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle-------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD-------------LWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH-------------HCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH-------------hCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 3456777764 33433 22 112455666666666 3565 6689999999999 499
Q ss_pred cchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHhCCC--cchhHHHHHHHHHHcCCChHHHHHH
Q 007970 74 PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA-SRKHLLVFVLERILEMGIT--LCMTTFQSLVAAYVGFGDLEIAETI 150 (583)
Q Consensus 74 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 150 (583)
.++|.+.|++..+.+..-+..++......++.. |+.+.+.+.+++....... |+....+.+. -++|..+
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~L 291 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWL 291 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHH
Confidence 999999999999976433477777888888885 9999999999999997655 5544444332 2455555
Q ss_pred HHHH
Q 007970 151 VQAM 154 (583)
Q Consensus 151 ~~~~ 154 (583)
+.++
T Consensus 292 L~~~ 295 (301)
T 3u64_A 292 KAHV 295 (301)
T ss_dssp HHTH
T ss_pred HHHh
Confidence 5444
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.94 E-value=0.25 Score=37.66 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHHHhhhhhccccCCCCCCCCCCC--CHHH
Q 007970 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE---ALLLWKEIKERCEVKKEGVNADSDLPPPLKP--DEEL 481 (583)
Q Consensus 407 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~ 481 (583)
.....+.+-|.+....|. |+..+--.+..++.+...... ++.+++.+.+.. .| ....
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-----------------~p~~~Rd~ 76 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-----------------SKEEQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-----------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----------------CcchHHHH
Confidence 344555666666655443 777777778888888877666 788888776541 24 2356
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
...|.-++.+.|++++|.+.++.+.+ +.|+..-.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n~QA 110 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHH
Confidence 66777888999999999999999886 45655433
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.48 E-value=1.2 Score=34.10 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 282 (583)
..+...++.+...|+-+.-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n----~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN----NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc----CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34445556666666666666666664332 456666666666777777777777777776666664
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.05 E-value=1.5 Score=33.57 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=90.4
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
.-.|.+++..++..+.... .+..-+|.+|--....-+-+-..++++.+-+. -|. ...|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SCG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------HhhhcHHHH
Confidence 3457777888887777764 24555565555555555555555555555332 121 234444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
...+-.+ ..+...+...+..+...|.-++-.+++..+.. ..+|++...-.+..+|.+.|+..+|.+++.++-+
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444332 22456667777788888888888888888654 4567788888888888888888888888888888
Q ss_pred CCCC
Q 007970 422 NGFY 425 (583)
Q Consensus 422 ~g~~ 425 (583)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 7754
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.76 E-value=0.0099 Score=56.56 Aligned_cols=377 Identities=13% Similarity=0.086 Sum_probs=211.1
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
|+..|..+|.+..+.|. +++-+..+.-..+. ..++.+=+.|+-+|++.+++.+-.+++.
T Consensus 82 Dps~y~eVi~~A~~~~~--~edLv~yL~MaRk~-------------~ke~~IDteLi~ayAk~~rL~elEefl~------ 140 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGN--WEELVKYLQMARKK-------------ARESYVETELIFALAKTNRLAELEEFIN------ 140 (624)
T ss_dssp CCCSSSHHHHHTTTSSC--CTTHHHHHHTTSTT-------------CCSTTTTHHHHHHHHTSCSSSTTTSTTS------
T ss_pred ChHHHHHHHHHHHhCCC--HHHHHHHHHHHHHH-------------hcccccHHHHHHHHHhhCcHHHHHHHHc------
Confidence 56678899999999998 88877766544331 2233444578899999999877554432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC--------------------CCcchhHHHHHHHHHHcCCChHHHH
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG--------------------ITLCMTTFQSLVAAYVGFGDLEIAE 148 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (583)
.||..-...+..-|...|.++.|.-+|..+.... -..++.||..+..+|...+++..|.
T Consensus 141 -~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 141 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp -CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred -CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 2666666777888888888887776665442110 1236789999999999999998876
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 007970 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228 (583)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 228 (583)
..--.+.-. ...+.-....|...|.+++-+.+++.-+.. -......|+-|.-.|++- +
T Consensus 220 icGLniIvh-------adeL~elv~~YE~~G~f~ELIsLlEaglgl--------------ErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 220 MCGLHIVVH-------ADELEELINYYQDRGYFEELITMLEAALGL--------------ERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HHHHHHHCC-------SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS--------------TTCCHHHHHHHHHHHHSS-C
T ss_pred Hhcchhccc-------HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC--------------CchhHHHHHHHHHHHHhc-C
Confidence 553333221 011223345688899999999999987721 145678888888888876 3
Q ss_pred hhHHHHHHHHHHhcccCCCCC-------CHHHHHHHHHHHHHcCChHHHHHHH-------------HHHHhCCCCCCHHH
Q 007970 229 VSDTVRMLGAMRRQEDNASHP-------DHVTYTTVVSALVKAGSMDRARQVL-------------AEMTRIGVPANRIT 288 (583)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~-------------~~~~~~~~~~~~~~ 288 (583)
+++..+.++....+ --.| ....|.-++-.|.+-.++|.|.... .++... -.|...
T Consensus 278 PeKlmEHlklf~sr---iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~Ei 352 (624)
T 3lvg_A 278 PQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVEL 352 (624)
T ss_dssp TTHHHHHHTTSSSS---SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHH
T ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHH
Confidence 55555555444332 1112 2244677777777777777654321 111100 123333
Q ss_pred HHHHHHHH---------------HhcCCHHHHHHHHHHHHhcC---------CCCCCHHHHHHHHHHHHhcCCHHHHHH-
Q 007970 289 YNILLKGY---------------CQQLQIDKAKELLREMADDA---------KIEPDVVSYNILIDGFILIDDSAGALT- 343 (583)
Q Consensus 289 ~~~l~~~~---------------~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~li~~~~~~~~~~~a~~- 343 (583)
|-..|..| ...=+...+.++|++.-.-. ....+...-.++-..|....|++....
T Consensus 353 yYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~S 432 (624)
T 3lvg_A 353 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTS 432 (624)
T ss_dssp HHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33333333 22333334444443221000 001233333444445555555543321
Q ss_pred -----------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 344 -----------FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 344 -----------~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
+-+++.++. -...-......|.+.++++++..+.++= + .|.-.|......|+.+-|
T Consensus 433 Id~ydNFD~i~LA~rLEkHe---L~eFRrIAA~LYkkn~rw~qsi~l~KkD----k------lykDAietAa~S~~~ela 499 (624)
T 3lvg_A 433 IDAYDNFDNISLAQRLEKHE---LIEFRRIAAYLFKGNNRWKQSVELCKKD----S------LYKDAMQYASESKDTELA 499 (624)
T ss_dssp TSSCCCSCTTHHHHHHHTCS---SHHHHHHHHHHHHTTCHHHHHSSCSSTT----C------CTTGGGTTTTTCCCTTHH
T ss_pred HHHhccccHHHHHHHHhhCc---hHHHHHHHHHHHHhcccHHHHHHHHHhc----c------cHHHHHHHHHHcCCHHHH
Confidence 222222221 1111122222345555666655543211 1 122234455566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (583)
.++++-..+.| +...|...+..|...=+++-++++
T Consensus 500 eeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 500 EELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 77777777654 455677777777777777777665
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.62 E-value=0.52 Score=35.94 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHcCCHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL---ANKVFDEMLRDPRVK-VDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 412 (583)
....+.+-|......| .++..+-..+..++.+..+... ++.++..+.+. +.+ ......-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445556666655544 3677777777788888777665 88888888774 211 2344555666788899999999
Q ss_pred HHHHHHHHHCCCCCC
Q 007970 413 KRIIERMKENGFYPN 427 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~ 427 (583)
.+.++.+++. .|+
T Consensus 94 ~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHHh--CCC
Confidence 9999998874 554
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.26 E-value=6.3 Score=38.11 Aligned_cols=239 Identities=11% Similarity=0.085 Sum_probs=136.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH----HHcCChHH--HHHHHHHHHh--CC
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL----VKAGSMDR--ARQVLAEMTR--IG 281 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~--a~~~~~~~~~--~~ 281 (583)
..+......++..|...++++...+.+..+.... |..+ .....++..+ ......+. -..+.+.+.. .|
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr--~qlk--~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~ 128 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH--GQLK--LSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTEN 128 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT--TTSH--HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--hhhH--HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 4567788899999999999999988887776542 2322 2233444333 23343332 1222221111 11
Q ss_pred -CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 007970 282 -VPA---NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRA--- 350 (583)
Q Consensus 282 -~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~--- 350 (583)
+-. .......|...|...|++.+|..++..+..+.....+ ...+...+..|...+++.+|..++.++..
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 111 1234467888999999999999999998654322222 24577778889999999999999988642
Q ss_pred -CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 351 -RGIAPT--KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML----VEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 351 -~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
....|+ ...+...+..+...+++.+|...|..+........+...+..+ +.+..-.+....-..++.......
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~ 288 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN 288 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc
Confidence 222222 2345666777788899999988888776532222233322221 111122221122222233322222
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHhHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLA--RKPGEALLLWK 452 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~ 452 (583)
..++...+..++.+|... .+++...+.|.
T Consensus 289 ~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 289 NLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 234667788888887553 34555544443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.24 E-value=0.84 Score=35.83 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHHH-HHHHHH------HHHhcCCHHHHHHHHHHHhc
Q 007970 319 EPDVVSYNILIDGFILIDDS------AGALTFFNEMRARGIAPTKIS-YTTLMK------AFALSSQPKLANKVFDEMLR 385 (583)
Q Consensus 319 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~-~~~l~~------~~~~~~~~~~a~~~~~~~~~ 385 (583)
+.|..+|-..+....+.|+. ++..++|++.... ++|+... +...+. .+...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34566666666666666777 7777788877765 5554311 111111 12334789999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 386 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
. +-.- ...|-....--.+.|+.+.|.+++.+.+..+.+| ...+...+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 3 2222 7778788888889999999999999999876544 334444433
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.02 E-value=6.9 Score=37.86 Aligned_cols=194 Identities=10% Similarity=0.077 Sum_probs=92.9
Q ss_pred cCChhHHHHHHHHHHhcc--cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc
Q 007970 226 EGRVSDTVRMLGAMRRQE--DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY----CQQ 299 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 299 (583)
.+++++|++.+..+.+.. .............++..|...++++...+.+..+.+..-.. ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 377888888777766531 11223345667778888888888888877776655432111 22223333322 222
Q ss_pred CCHHH--HHHHHHHHHh--cCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 007970 300 LQIDK--AKELLREMAD--DAKIEP---DVVSYNILIDGFILIDDSAGALTFFNEMRAR--GIAPT---KISYTTLMKAF 367 (583)
Q Consensus 300 ~~~~~--A~~~~~~~~~--~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 367 (583)
...+. -..+.+.+.. ...+-. .......|...+...|++.+|..++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1111111100 000111 1112344555566666666666666665432 21111 22344455556
Q ss_pred HhcCCHHHHHHHHHHHhcC---CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 368 ALSSQPKLANKVFDEMLRD---PRVKVD--IVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~---~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
...+++..|..+++++... ...+|+ ...+...+..+...+++.+|-+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666654210 011111 1234445555555566666655555543
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.77 Score=47.38 Aligned_cols=53 Identities=23% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
..-|...|+++-|+++.+++... .|+ ..+|..|+.+|.+.|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~------------------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL------------------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH------------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc------------------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34467789999999999998876 555 599999999999999999999999987
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.64 E-value=4 Score=32.05 Aligned_cols=104 Identities=11% Similarity=0.179 Sum_probs=71.8
Q ss_pred chHHHHHHHHHHHhcCCCCh------hhhHHhHHHHHHHHhhcCCccccccCCcCH----HHHHHHHH---HHHhcCCcc
Q 007970 9 HVKAWSTVVSRLAASGDDGP------VESVKLFDVVVKRVRKFSDPDIVSDSKPDT----AAYNAVLN---ACANLGKPK 75 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~---~~~~~g~~~ 75 (583)
|..+|-..+.-+-+.|+ . ++.+++|++.... +||+. ..|-.+-- .+...++.+
T Consensus 12 ~yd~W~~yl~llE~~g~--p~~d~~l~rlrd~YerAia~------------~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d 77 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSV--PLSDALLNKLIGRYSQAIEA------------LPPDKYGQNESFARIQVRFAELKAIQEPD 77 (161)
T ss_dssp SHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHHHHHHHH------------SCGGGGTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHcCC--CchhhHHHHHHHHHHHHHHc------------CCccccccHHHHHHHHHHHHHHHHhcCHH
Confidence 56688888888888887 6 7777888887765 55532 11111111 113448899
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcc
Q 007970 76 KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127 (583)
Q Consensus 76 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 127 (583)
+|.++|+.+.+.+-+- ...|......-.++|++..|..++...+..+..|.
T Consensus 78 ~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 78 DARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp GCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 9999999987753333 66677777777788999999999998888774443
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.39 E-value=6.9 Score=36.89 Aligned_cols=146 Identities=11% Similarity=-0.053 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH----
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRM-GLVEEAKRIIERMKENGFYPNVATY---- 431 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~~~---- 431 (583)
...+...|.+.|+.++..+++.....-.+.-+ .......++..+... +..+.-.++..+..+.... +..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34455555566666655555554432111111 122344455554443 2233333333333321000 11122
Q ss_pred --HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC-CC--HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 432 --GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK-PD--EELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 432 --~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..++..|...|++.+|.+++.++.+.... +. +. ..++..-+..|...|++.++...+.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~--------------~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKK--------------LDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------------SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--------------cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 25677899999999999999999887531 11 11 2556666788999999999999999885
Q ss_pred H--cCCCCCHHHHHHH
Q 007970 507 E--HGIPPNKTKYKKI 520 (583)
Q Consensus 507 ~--~~~~p~~~~~~~~ 520 (583)
. ..+.+++..-..+
T Consensus 167 ~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 167 TTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHSCCCHHHHHHH
T ss_pred hhhccCCCCHHHHHHH
Confidence 4 3344656554443
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.35 E-value=1.6 Score=41.49 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH---
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME--- 506 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 506 (583)
+...++..+...|++++++..+..+.... +-+...+..++.++.+.|+..+|++.|+.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-----------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-----------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34556777889999999999999998762 4466899999999999999999999999974
Q ss_pred --HcCCCCCHHHHH
Q 007970 507 --EHGIPPNKTKYK 518 (583)
Q Consensus 507 --~~~~~p~~~~~~ 518 (583)
+.|+.|.+.+-.
T Consensus 236 ~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 236 ADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHSCCCCHHHHH
T ss_pred HHHhCCCCCHHHHH
Confidence 479999988644
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.73 E-value=4.5 Score=30.97 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHH
Q 007970 423 GFYPNVATYGSLANGISLARKP---GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRK 497 (583)
Q Consensus 423 g~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 497 (583)
+-.|+..+--.+..++.+.... .+++.+++.+.+. .|. ...+-.|.-++.+.|++++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~------------------~~~~~Rd~LYyLAvg~yklgdY~~ 96 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------------------AESRRRECLYYLTIGCYKLGEYSM 96 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------------------CGGGHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------------------CcchhHHHHHHHHHHHHHhhhHHH
Confidence 3457777777788888777654 4688888888875 452 4677778889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Q 007970 498 ALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
|.+..+.+.+ +.|+..-...+
T Consensus 97 Ar~y~d~lL~--~eP~N~QA~~L 117 (134)
T 3o48_A 97 AKRYVDTLFE--HERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHT--TCTTCHHHHHH
T ss_pred HHHHHHHHHh--hCCCCHHHHHH
Confidence 9999999984 67776655444
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.67 E-value=1.8 Score=34.66 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccC--
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKEN-GFYPN-------VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA-- 467 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 467 (583)
.-++.+...|.++.|+-+.+.+... +..|+ ..++..+..++...|++.+|...|+++++...........
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3356677788888888777765432 11233 2356667778888999999999998887664421111100
Q ss_pred --C--CCCC--CCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 468 --D--SDLP--PPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 468 --~--~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
. ...+ ....++.+.-.-+..+|.+.|++++|+.+++.+.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0 0000 0233344555567889999999999999998653
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.39 E-value=12 Score=41.44 Aligned_cols=170 Identities=10% Similarity=0.027 Sum_probs=98.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCC
Q 007970 99 MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178 (583)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (583)
++..+...+..+.+.++... .+.++..-..+..+|...|++++|.+.|++....- ...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~-----------------~~~ 875 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-----------------YSH 875 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSC-----------------TTC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-----------------ccc
Confidence 44445555666555543322 23344444556777888888888888887653210 000
Q ss_pred CCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC--HHHHHH
Q 007970 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD--HVTYTT 256 (583)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~ 256 (583)
........-+..+.... .....-..-|..++..+.+.+.++.+.++-....+.... ..++ ...|..
T Consensus 876 ~~l~~~~~~~~~~~~~~-----------~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~ 943 (1139)
T 4fhn_B 876 TSQFAVLREFQEIAEKY-----------HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET-DDEDLSIAITHE 943 (1139)
T ss_dssp CCSCSSHHHHHHHHHTT-----------TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHH
T ss_pred chhhhhhcccccccccc-----------cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC-CChhhHHHHHHH
Confidence 11111111111111000 001123456788888999999999998888777664211 1111 125788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 257 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
+.+.+...|++++|...+-.+..... -......|+...|..+..+.
T Consensus 944 iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 944 TLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 88999999999999988887776543 35667777777776666543
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.02 E-value=6 Score=43.77 Aligned_cols=144 Identities=9% Similarity=-0.021 Sum_probs=93.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC------------------
Q 007970 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV------------------ 389 (583)
Q Consensus 328 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 389 (583)
++..+...+.++-+.++..- ++.+....-.+..++...|++++|.++|++.....+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44455566666655544322 2334444455666788889999999998776431100
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhh
Q 007970 390 ---KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV----ATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462 (583)
Q Consensus 390 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 462 (583)
..-..-|..++..+-+.+.++.+.++-....+..-.-+. ..|..+...+...|++++|...+-.+...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~----- 967 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT----- 967 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-----
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-----
Confidence 011245778888999999999999998887764222222 25778888999999999999888777643
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 007970 463 EGVNADSDLPPPLKPDEELLDALADICVRAAF 494 (583)
Q Consensus 463 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 494 (583)
.--..++..|+..++..|.
T Consensus 968 -------------~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 968 -------------PLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp -------------SSCHHHHHHHHHHHHHHCC
T ss_pred -------------HHHHHHHHHHHHHHHhCCC
Confidence 3334667777665554444
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.92 E-value=5.7 Score=30.86 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC--CHHHHHHHHHHHHhhhhHHHH
Q 007970 424 FYPNVATYGSLANGISLARKP---GEALLLWKEIKERCEVKKEGVNADSDLPPPLKP--DEELLDALADICVRAAFFRKA 498 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 498 (583)
-.|+..+--.+..++.+.... .+++.+++.+... .| ....+..|.-++.+.|++++|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~------------------~~~~~RdcLYyLAvg~ykl~~Y~~A 96 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------------------AESRRRECLYYLTIGCYKLGEYSMA 96 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH------------------CCSTHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------------------CccchhHHHHHHHHHHHHhhhHHHH
Confidence 357777777788888877754 4688888888775 44 236666778899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH
Q 007970 499 LEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
.++.+.+.+ +.|+..-...+
T Consensus 97 r~y~d~lL~--~eP~n~QA~~L 116 (144)
T 1y8m_A 97 KRYVDTLFE--HERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHH--TCCCCHHHHHH
T ss_pred HHHHHHHHh--cCCCcHHHHHH
Confidence 999999986 56766544433
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.60 E-value=4 Score=29.40 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
+.-+..+-++.+....+.|++.+....+++|.+.+++..|+++++.+..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455666777777777778888888888888888888888888888777763
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.22 E-value=4 Score=42.19 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=49.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
...|...|+++.|+.+-++....- |.+-.+|..|..+|...|+++.|+-.+..++-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 355677899999999999998874 66788999999999999999999999988863
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.97 E-value=1.6 Score=41.44 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK-----ENGFYPNVATYGSL 434 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~~~l 434 (583)
...++.++...|+++++...+..+.. ..+.+...|..+|.++.+.|+..+|++.|+.+. +.|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566777788999999988888876 456688889999999999999999999998865 35888988765544
Q ss_pred HH
Q 007970 435 AN 436 (583)
Q Consensus 435 ~~ 436 (583)
-.
T Consensus 252 ~~ 253 (388)
T 2ff4_A 252 ER 253 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.95 E-value=2.4 Score=30.53 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 74 PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 74 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
.-+..+-++.+....+-|++....+.+++|.+.+++..|.++++.++..- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 44567777777777888999999999999999999999999998887653 333445665543
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.53 E-value=5.2 Score=32.07 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=67.0
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH--HHHHHHHHHHHhhhhHHH
Q 007970 422 NGFYPNVAT--YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE--ELLDALADICVRAAFFRK 497 (583)
Q Consensus 422 ~g~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 497 (583)
.|+.|.... +-.-+..+...|.++.|+-+...+......... -+.|.. .++..+.+++...|.|..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~----------~~sp~~~~~~l~~ladalf~~~eyrr 81 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPE----------LFSPPQKYQLLVYHADSLFHDKEYRN 81 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTT----------SSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcc----------cccHHHHHHHHHHHHHHHHcccHHHH
Confidence 355554433 344456678899999999888887665321000 012222 577778899999999999
Q ss_pred HHHHHHHHHH--cCC--CCC-------------------HHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007970 498 ALEIVACMEE--HGI--PPN-------------------KTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKF 554 (583)
Q Consensus 498 A~~~~~~~~~--~~~--~p~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 554 (583)
|...|+...+ ..+ .++ .....-.+..++... ++.++|+..
T Consensus 82 A~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l-----------------~~~~~Ai~~ 144 (167)
T 3ffl_A 82 AVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL-----------------KQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHT-----------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH-----------------CCHHHHHHH
Confidence 9999999743 111 111 011111124444444 899999999
Q ss_pred HhcCCCCC
Q 007970 555 WLGLPNSY 562 (583)
Q Consensus 555 ~~~~~~~~ 562 (583)
++++|.+-
T Consensus 145 Le~Ip~k~ 152 (167)
T 3ffl_A 145 LDGIPSRQ 152 (167)
T ss_dssp HHTSCGGG
T ss_pred HhcCCchh
Confidence 99998753
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.66 E-value=7.1 Score=29.83 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
+.-+..+-++.+....+.|++.+....+++|.+.+++..|+++++-++.+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 445566667777777788888888888888888888888888888887764
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.05 E-value=9.6 Score=29.20 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHH
Q 007970 90 KPDVLTYNVMIKLCARASR---KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 163 (583)
.|+..+--....++.+..+ ...++.+++.+.+.+.......+..|.-++.+.|+++.|.+..+.+.+..|+...
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4666665556666666654 4467888888888762234556667888899999999999999999887665443
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.15 E-value=12 Score=28.58 Aligned_cols=60 Identities=10% Similarity=0.198 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 76 KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 76 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455556666666777888888888888888888888888888776652 333445555443
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.33 E-value=17 Score=28.23 Aligned_cols=68 Identities=12% Similarity=-0.050 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVE---EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.|+..+--.+..++++..+.+ +++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555555555566555433 45556665554321112223333444566666666666666666654
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.71 E-value=41 Score=31.63 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (583)
..+...|...|.+.|+.++..+++......
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 48 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF 48 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677888888888888888888776553
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.29 E-value=38 Score=30.93 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 442 (583)
.-++.....+...|.+.+++.+|...|- . |-.+.+..+..++.-+...+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 3467777888888999999999888772 2 33444466766665554443
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.64 E-value=48 Score=30.24 Aligned_cols=167 Identities=10% Similarity=0.080 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhCCCCCCHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR----ARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.|.++..-|.+.+++++|++++..-.. .+.+.|+... +.-+++...+.+++++.....
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~------------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~ 98 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ------------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRG 98 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 566677788888999998887654322 1233344333 333345555666777777776
Q ss_pred HHHHHHHhcCCH--------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007970 291 ILLKGYCQQLQI--------DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362 (583)
Q Consensus 291 ~l~~~~~~~~~~--------~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 362 (583)
.++..+.....- .+|+.+-.+. .....-|......+...|.+.+++.+|...|- .|-.++...|..
T Consensus 99 rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~ 172 (336)
T 3lpz_A 99 KLLGCLRLFQPGEPVRKRFVKEMIDWSKKF--GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLAR 172 (336)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHHHHH--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHH
Confidence 777666654431 1222222111 11234466777777888888888888877762 233333456655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
++.-+...+... ..+...-.+++ -|.-.++...|..+++...+
T Consensus 173 mL~ew~~~~~~~---------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 173 MEYEWYKQDESH---------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTSCGG---------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc---------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 554443333211 12222223333 45667788888887766553
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.98 E-value=30 Score=33.17 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---CCCCCCHHH--H
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR---IGVPANRIT--Y 289 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~--~ 289 (583)
+...+...|.+.|++++|.+.|.++...- .+...-...+..++..+...+++..+...+..+.. .+-.++... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45678888999999999999999887752 12233356777888888888999998888887753 222222111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
..-...+...+++..|-..|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11112234567788888777776553
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.16 E-value=25 Score=30.83 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=30.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007970 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 351 (583)
..+.|++++|++....-++.. +.|...-..++..+|-.|++++|..-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344556666666555554432 345555555566666666666666666555553
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.09 E-value=13 Score=35.80 Aligned_cols=64 Identities=6% Similarity=-0.070 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+...+...|.+.|++++|.+++.++...+. +...-..++...++.+...+++..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~--------------~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAI--------------STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHT--------------CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 567788889999999999999999988742 2233347888889999999999999999999854
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.01 E-value=44 Score=29.27 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=29.5
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
..+.|.+++|++....-++ ..|.|...-..|+..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455556666655555554 2344555555556666666666666655555554
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.22 E-value=28 Score=24.95 Aligned_cols=78 Identities=19% Similarity=-0.018 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 487 (583)
+.++|..+-+-+...+. ...+-.+-+..+...|+|++|..+.+.. -.||...|.+|
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--------------------c~pdlepw~AL-- 76 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN--------------------PWPALEPWFAL-- 76 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC--------------------CCGGGHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC--------------------CCchHHHHHHH--
Confidence 45555555555554321 1111112223356667777766654432 15665555444
Q ss_pred HHHhhhhHHHHHHHHHHHHHcC
Q 007970 488 ICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
+-.+.|..+++..-+..+...|
T Consensus 77 ce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 77 CEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHhcccHHHHHHHHHHHHhCC
Confidence 3356666666666665555433
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.00 E-value=29 Score=24.91 Aligned_cols=76 Identities=20% Similarity=0.030 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 487 (583)
+.++|..+-+-+...+. ...+-.+-+..+...|+|++|..+.+.. -.||...|.+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--------------------c~pdlepw~AL-- 77 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL--------------------AYPDLEPWLAL-- 77 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS--------------------CCGGGHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC--------------------CCchHHHHHHH--
Confidence 45566666555554431 1111112223456677777776665432 15666665444
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 007970 488 ICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~ 507 (583)
+-.+.|..+++...+..+..
T Consensus 78 ce~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 78 CEYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHTCHHHHHHHHHHHTT
T ss_pred HHHhcccHHHHHHHHHHHHh
Confidence 33566766666666655543
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.84 E-value=29 Score=24.88 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMK--AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 413 (583)
...++|..+-+.+...+ + .-...+|+ .+...|++++|..+.+.+ ..||...|.+|. -.+.|-.+++.
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALc--e~rlGl~s~le 88 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALC--EWHLGLGAALD 88 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHH--HHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHH--HHhcccHHHHH
Confidence 44566666666666553 2 22233333 456677777777665433 247777766653 35677777777
Q ss_pred HHHHHHHHCC
Q 007970 414 RIIERMKENG 423 (583)
Q Consensus 414 ~~~~~~~~~g 423 (583)
..+.++..+|
T Consensus 89 ~rL~~la~sg 98 (115)
T 2uwj_G 89 RRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHhCC
Confidence 7777776654
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.97 E-value=31 Score=24.79 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMK--AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 413 (583)
...++|..+-+.+...+. .-...+|+ .+...|++++|..+.+.+- .||...|.+|. -.+.|-.+++.
T Consensus 21 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALC--EYRLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH--HHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHH
Confidence 345666666666555432 22223333 4556677777776654432 46666665553 34566666666
Q ss_pred HHHHHHHHCC
Q 007970 414 RIIERMKENG 423 (583)
Q Consensus 414 ~~~~~~~~~g 423 (583)
..+.++..+|
T Consensus 90 ~rL~~la~sg 99 (116)
T 2p58_C 90 SRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 6666665554
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.76 E-value=51 Score=27.39 Aligned_cols=55 Identities=16% Similarity=0.081 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 426 (583)
....+.++|..|....--..-...|-.....+-..|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3455666666665432222334555666666666666666666666666655555
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.46 E-value=64 Score=26.81 Aligned_cols=54 Identities=7% Similarity=-0.042 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007970 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 355 (583)
..++..+|..|....--..-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444444443322122223334444444444444444444444444444344
No 270
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.98 E-value=30 Score=29.77 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEF--GAKP----DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
--+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .+........+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 4567889999999999999987653 2222 1122223333333333333344444444 32 456777778889
Q ss_pred HHHcCCChHHHHHHHHHHHh
Q 007970 137 AYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~ 156 (583)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 99999999999999876654
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.14 E-value=99 Score=27.91 Aligned_cols=128 Identities=16% Similarity=0.076 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF----FNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
+..=|.+.+++++|++++..-.. .+.+.|+...|.++ .+-..+.+++++......++..+
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33345556666666665543321 13334444443332 33344455666666555555554
Q ss_pred HhcCC--------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 368 ALSSQ--------PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439 (583)
Q Consensus 368 ~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 439 (583)
..... ...|..+-.+... ...-++.....+...|.+.|++.+|...|-. |-.-+...+..++.-+.
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 44221 1122222211111 1234677888888888999998888877641 11113555655555544
Q ss_pred hc
Q 007970 440 LA 441 (583)
Q Consensus 440 ~~ 441 (583)
..
T Consensus 177 ~~ 178 (312)
T 2wpv_A 177 CQ 178 (312)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=56.01 E-value=2.1e+02 Score=30.48 Aligned_cols=260 Identities=14% Similarity=0.059 Sum_probs=142.5
Q ss_pred CCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC--CC--CCCHH
Q 007970 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN--AS--HPDHV 252 (583)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~~~ 252 (583)
..|+.++++..+...++... .-.+....-..+.-+.+..|..+++..++......... +- .+...
T Consensus 386 h~g~~~~gl~~L~~yL~~~~-----------s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSR-----------ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSC-----------CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred ccCchHHHHHHHHHhccccC-----------CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHH
Confidence 55788888888888773210 01122334445555666777777788877776653100 00 01111
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 007970 253 TYTTVVSALVKAGS-MDRARQVLAEMTRIGVPANRI--TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329 (583)
Q Consensus 253 ~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 329 (583)
.-.++.-+.+-.|. -+++.+.+..+....- +... .-.+|...+...|+-+....++..+.+. .+......+.
T Consensus 455 ~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~----~~e~vrR~aa 529 (963)
T 4ady_A 455 HGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET----QHGNITRGLA 529 (963)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC----SCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc----CcHHHHHHHH
Confidence 12222222222332 2456666666665321 1111 1123344455678888888888777542 2333333333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007970 330 --DGFILIDDSAGALTFFNEMRARGIAPTKISYT--TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405 (583)
Q Consensus 330 --~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (583)
-++...|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+..+ ...+..-...+.-++..
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHT
T ss_pred HHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhc
Confidence 34557789888888888887742 22222222 3344677888988888899998873 22233333333334455
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHH
Q 007970 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP-GEALLLWKEIKE 456 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 456 (583)
.|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .+++..+..+..
T Consensus 607 ~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 677777777777666543 34444333444444445554 578888888764
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.04 E-value=1.3e+02 Score=27.23 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhCCCCCCHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDR----ARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.|.++..-|.+.+++++|++++..-.. .+.+.|+... |.-+++...+.+++++.....
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~ 96 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 455666777777777777777644322 1233454433 333455555667777777777
Q ss_pred HHHHHHHhcCCHH-HHHHHHHHHHh----cCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007970 291 ILLKGYCQQLQID-KAKELLREMAD----DAK-IEPDVVSYNILIDGFILIDDSAGALTFF 345 (583)
Q Consensus 291 ~l~~~~~~~~~~~-~A~~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~ 345 (583)
.++..+.....-+ .=.++++.+++ ..+ ..-++.....+...|.+.+++.+|...|
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 7776665532211 01112222211 111 2345666677777777777777776655
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.43 E-value=94 Score=24.44 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 426 (583)
+.++|..|....--..-...|-.....+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555554432222334455555555556666666666666665554444
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.87 E-value=1.5e+02 Score=25.36 Aligned_cols=91 Identities=8% Similarity=0.030 Sum_probs=47.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP----DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
.-++.+....++++|.+++++..+.-. +.++ ........+..-.....-.-+..+.+.+.. .+........+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~-~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLE-DLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-hCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 456788889999999999988765421 1111 111222223322222223333344444422 33444455555
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 007970 294 KGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~ 312 (583)
..+.+.|+.++|.++|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 6666666666666666544
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.73 E-value=1.2e+02 Score=23.91 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 355 (583)
..|......+...|++.+|.++|+.-++.+-.|
T Consensus 102 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 102 PLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444444444455555555555544444444
No 277
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.34 E-value=1.1e+02 Score=23.20 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD--SAGALTFFNEMRARGIA 354 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 354 (583)
...++.-|...|+.++|.+.++++.. . .-........+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~-p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV-P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-C-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34456666666777777777766621 0 01112333444444444322 34555666666655543
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.19 E-value=1.3e+02 Score=24.01 Aligned_cols=52 Identities=10% Similarity=-0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 427 (583)
+.++|..|....-...-...|-.....+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455555555322223345566666666667777777777777666655553
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.83 E-value=1.3e+02 Score=23.72 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD--SAGALTFFNEMRARGIA 354 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 354 (583)
...++.-|...|+.++|.+.++++.. . ......+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~-p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV-P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC-C-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34456666666677777766666621 0 01112233344444444222 33455566666555443
No 280
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.34 E-value=1.2e+02 Score=25.46 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HH-----HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-EL-----LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
.+.|+.+|+.+.+.. .+.... .. -...+-.|.+.|.+++|.+++++... -.++..-.
T Consensus 88 LESAl~v~~~I~~e~---------------~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~--~~~s~~kL 150 (235)
T 3bu8_A 88 LESAINVLEMIKTEF---------------TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS--KDPTTQKL 150 (235)
T ss_dssp HHHHHHHHHHHHHHT---------------TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST--TCGGGHHH
T ss_pred HHHHHHHHHHHHHhh---------------cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc--CCCCchHH
Confidence 457888888888763 111111 11 22345689999999999999999853 23444434
Q ss_pred HHH
Q 007970 518 KKI 520 (583)
Q Consensus 518 ~~~ 520 (583)
...
T Consensus 151 r~k 153 (235)
T 3bu8_A 151 RND 153 (235)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.56 E-value=2.7e+02 Score=27.20 Aligned_cols=66 Identities=9% Similarity=0.201 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH--HHH-HHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH--VTY-TTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
...+|.+++.|...+.++.|.+++.+..--. ...++. .+| ..+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~--~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPH--TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT--TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCc--ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5678999999999999999999998874210 111221 122 23455666778888888888887764
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.98 E-value=1.6e+02 Score=23.51 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 355 (583)
..|......+...|++.+|.++|+.-++.+-.|
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334444444445555555555555555544444
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.86 E-value=1.8e+02 Score=23.14 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC--CHHHHHHHHH-HH-----HhcCChhHHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKP--DVLTYNVMIK-LC-----ARASRKHLLVFVLERILE 121 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~-~~-----~~~~~~~~a~~~~~~~~~ 121 (583)
+|..-+..|-. |++-+|-++|+........+ ....|..||+ .. .+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44445555544 99999999999998765455 5566777777 32 356888999988888765
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.39 E-value=1.5e+02 Score=24.99 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHcCCChHHHHH
Q 007970 76 KFLQLFDQMHEF-----GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC-MTTFQSLVAAYVGFGDLEIAET 149 (583)
Q Consensus 76 ~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 149 (583)
.-..+++...+. ..+-|..-...-|. |+.. .+.+.++|..|...|+-.. ...|..-...+-..|++.+|..
T Consensus 95 ~L~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 171 (223)
T 4aez_C 95 GLVTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADE 171 (223)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345566665543 12234443333332 3332 3577788888888876554 3456677777888888999988
Q ss_pred HHHHHHhhh
Q 007970 150 IVQAMREGR 158 (583)
Q Consensus 150 ~~~~~~~~~ 158 (583)
+|+.-....
T Consensus 172 Vy~~Gi~~~ 180 (223)
T 4aez_C 172 VYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 888766544
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.10 E-value=3.4e+02 Score=24.96 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL--VEEAKRIIERMKENGFYPNV 428 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~p~~ 428 (583)
....++.-|...++.++|...++++... .. ........+..++-+.++ .+...+++..+...|+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p-~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVP-HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCT-TC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCC-cc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 3577788888889999999999888541 11 123344455555544333 34567777777776655433
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.62 E-value=5.5e+02 Score=27.52 Aligned_cols=64 Identities=9% Similarity=-0.079 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-----------------------CHHHHHHHHHHHHHcCCHHHH
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV-----------------------DIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A 412 (583)
++..--.+..+|...|++++|...|+++-. |+.. ...-|..++..+-+.+-++.+
T Consensus 839 t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~v 916 (950)
T 4gq2_M 839 DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 916 (950)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHH
Confidence 333333445556666666666666665532 2211 012355555556666666666
Q ss_pred HHHHHHHHH
Q 007970 413 KRIIERMKE 421 (583)
Q Consensus 413 ~~~~~~~~~ 421 (583)
.++-+..++
T Consensus 917 i~fA~lAI~ 925 (950)
T 4gq2_M 917 LEFSLLADA 925 (950)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655554
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.86 E-value=2.2e+02 Score=22.31 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL--VEEAKRIIERMKENGFY 425 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~ 425 (583)
...++.-|...++.++|...++++.. .......+...+..++-+.+. .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~--p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45566666667777777777777642 111122233333334433222 33455566666555443
No 288
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.60 E-value=1.4e+02 Score=20.04 Aligned_cols=61 Identities=11% Similarity=0.207 Sum_probs=37.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 83 QMHEFGAKPDVLTYNVMIKLCARAS-RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 83 ~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4556676665543 34555555544 5566777888887766555666666666666655543
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.72 E-value=1.6e+02 Score=24.84 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 426 (583)
.+..+|..|....--..-...|-.....+-..|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444555554432222334455555555666666666666666665554444
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=25.83 E-value=5.2e+02 Score=25.98 Aligned_cols=342 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 007970 4 SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQ 83 (583)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 83 (583)
.|.+.....=+.-+..+++.++ +...+..+ ...+.+...-.....+....|+..+|......
T Consensus 66 ~~~p~~~~Lr~~~l~~l~~~~~--w~~~l~~~----------------~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 66 PTLPPARTLQSRFVNELARRED--WRGLLAFS----------------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTC--HHHHHHHC----------------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHhCCC--HHHHHHhc----------------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhH--HHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHH
Q 007970 84 MHEFGAKPDVLTYNVMIKLCARASRKHL--LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161 (583)
Q Consensus 84 m~~~~~~~~~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 161 (583)
+...|. ........++..+.+.|.+.. ...-++.+...| +...-..++... ..+...-.+.+..+.......
T Consensus 128 lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l--~~~~~~~a~~~~al~~~p~~~ 201 (618)
T 1qsa_A 128 LWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM--PADYQTIASAIISLANNPNTV 201 (618)
T ss_dssp HHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC--CGGGHHHHHHHHHHHHCGGGH
T ss_pred HHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC--CHHHHHHHHHHHHHHhChHhH
Q ss_pred HHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHH
Q 007970 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN--EGRVSDTVRMLGAM 239 (583)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~ 239 (583)
....... .++...-..+..++.+ ..+.+.|...+...
T Consensus 202 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~ 240 (618)
T 1qsa_A 202 LTFARTT-----------------------------------------GATDFTRQMAAVAFASVARQDAENARLMIPSL 240 (618)
T ss_dssp HHHHHHS-----------------------------------------CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhcc-----------------------------------------CCChhhHHHHHHHHHHHHhcCHHHHHHHHHhh
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007970 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319 (583)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 319 (583)
.....-...-....+..+.......+...++...+...... ..+.......+....+.|+++.|...|..|. ....
T Consensus 241 ~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~--~~~~ 316 (618)
T 1qsa_A 241 AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLP--MEAK 316 (618)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--TTGG
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcc--cccc
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCCCHH---------------HHHHHHHHHHhcCC
Q 007970 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRAR------------GIAPTKI---------------SYTTLMKAFALSSQ 372 (583)
Q Consensus 320 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~p~~~---------------~~~~l~~~~~~~~~ 372 (583)
......--+..++...|+.++|..+|+.+... |.++... .-...+..+...|.
T Consensus 317 ~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~ 396 (618)
T 1qsa_A 317 EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNL 396 (618)
T ss_dssp GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTC
T ss_pred ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCC
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (583)
...|...+..+.+. .+......+.......|.++.++.....
T Consensus 397 ~~~a~~ew~~~~~~----~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 397 DNTARSEWANLVKS----KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCChHHHHHHHHH
No 291
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.82 E-value=4.7e+02 Score=25.12 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007970 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353 (583)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 353 (583)
++-+.+.|++--...|..-...+...|++++|-++--... .|+-.+..|.+.+-..-...|+..-.+.+|..+.+.|
T Consensus 349 ~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP--~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g- 425 (494)
T 1bpo_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP--KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG- 425 (494)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG--GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc--cccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 354 APTKISYTTLMKAFALSSQPKLANKVFDE 382 (583)
Q Consensus 354 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 382 (583)
+.+..--..+++.....|+.+....++.+
T Consensus 426 ~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 426 QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHhhHHhHHHHhccHHHHHHHHHhc
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.73 E-value=1.1e+02 Score=27.61 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
.-...++.-|...|+.+||.+.++++
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 34567788888899999999999988
No 293
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.63 E-value=2.6e+02 Score=22.09 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEF--GAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~ 107 (583)
.++..+...+..-.|.++++.+.+. +...+..|.---+..+...|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3444555555555666666666554 43344444333344444444
No 294
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=24.49 E-value=3.4e+02 Score=30.24 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH
Q 007970 409 VEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 487 (583)
.++-.+.|.++.+. +.+ |.......+.--..++++..|++++.++.+. +|....|..++.
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~------------------k~~~~~~~~~~~ 1325 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE------------------KRTRDHFVELAA 1325 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc------------------cccHHHHHHHHH
Confidence 44556666666654 222 2222222233334688899999999999887 778788877777
Q ss_pred HHHhhhhHHHHHHHHHHH
Q 007970 488 ICVRAAFFRKALEIVACM 505 (583)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~ 505 (583)
.+...| |+....+.+.+
T Consensus 1326 ~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1326 INGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp HHHHHS-CHHHHHHHHHH
T ss_pred HHHHcC-CHHHHHHHHhh
Confidence 665554 44444444444
No 295
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.42 E-value=2.2e+02 Score=22.13 Aligned_cols=63 Identities=8% Similarity=0.205 Sum_probs=40.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH
Q 007970 82 DQMHEFGAKPDVLTYNVMIKLCARAS-RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 82 ~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
+.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34566777665443 34555555555 66778888888888766666666666667777666553
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.21 E-value=2.2e+02 Score=21.65 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCC
Q 007970 82 DQMHEFGAKPDVLTYNVMIKLCARAS-RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG 142 (583)
Q Consensus 82 ~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 142 (583)
+.+.+.|++++..=.. ++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 7 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.04 E-value=1.5e+02 Score=23.50 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=47.5
Q ss_pred chHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCcchhHHHHHHHHHHcCCChH
Q 007970 75 KKFLQLFDQ-MHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM--GITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 75 ~~A~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+.+.|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 334444433 45567776543 355677777777888999999999887 65666666666677777777654
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.85 E-value=2.6e+02 Score=21.73 Aligned_cols=63 Identities=6% Similarity=-0.013 Sum_probs=42.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH
Q 007970 82 DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 82 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
+.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3456677765433 34566777777778889999999988876667777666777777776553
No 299
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.58 E-value=1.2e+02 Score=19.76 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHc
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (583)
.++.++..++...-.++++..+.++.+.| ..+..+|-.-.+.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34556666666666666666676666666 4455555544444443
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.50 E-value=5.3e+02 Score=25.22 Aligned_cols=72 Identities=4% Similarity=-0.077 Sum_probs=43.5
Q ss_pred CCCCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCH--HH-HHHHHHHHHhcCCcchHHHH
Q 007970 4 SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT--AA-YNAVLNACANLGKPKKFLQL 80 (583)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~li~~~~~~g~~~~A~~~ 80 (583)
++...-+..+|.+++.|-..+. ++.|..+..+..- .. ...++. .. +-.+...+.-.+++.+|.+.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~--y~qA~~lvsk~~f-----P~-----~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~ 292 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGE--VDSASDFISKLEY-----PH-----TDVSSSLEARYFFYLSKINAIQLDYSTANEY 292 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSC--STTHHHHHHHHCS-----CT-----TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHccCc--HHHHHHHHhcCcC-----Cc-----ccCCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3334446678888888888777 8888777776531 00 001111 12 22345666777888888888
Q ss_pred HHHHHHC
Q 007970 81 FDQMHEF 87 (583)
Q Consensus 81 ~~~m~~~ 87 (583)
|......
T Consensus 293 L~~A~rk 299 (523)
T 4b4t_S 293 IIAAIRK 299 (523)
T ss_dssp HHHHTSS
T ss_pred HHHHHHh
Confidence 8777654
No 301
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.40 E-value=3e+02 Score=22.39 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
++..+-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.++.+ +...+..+.+ .++..+-.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~ 161 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK------DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQ 161 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh------CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 45555555555555555533 3333333322 244455555555555555533 3333333332 23444445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
..+.++.+.+. ..+...+..+.
T Consensus 162 ~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 162 SAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc-hhHHHHHHHHH
Confidence 55555555544 23333333333
No 302
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.33 E-value=69 Score=20.36 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 75 KKFLQLFDQMHEFGAKPDVLTYNVMIKLC 103 (583)
Q Consensus 75 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 103 (583)
++|.+.|.+|.+..-.++..||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444554444432223344455555444
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.22 E-value=2e+02 Score=22.22 Aligned_cols=61 Identities=7% Similarity=0.074 Sum_probs=36.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 82 DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 82 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34555676655432 33455555555 667888888887776555666655556666655544
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.07 E-value=2.6e+02 Score=21.51 Aligned_cols=63 Identities=6% Similarity=0.058 Sum_probs=43.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH
Q 007970 82 DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 82 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 44666777665543 3456666666777889999999988776667777666677777766543
No 305
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.83 E-value=1.6e+02 Score=22.30 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=18.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCC
Q 007970 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG 142 (583)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 142 (583)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333444445555555544443334444333444444443
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.21 E-value=2.6e+02 Score=21.11 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL--VEEAKRIIERMKENGFY 425 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~ 425 (583)
...++.-|...|+.++|...++++.. .......+...+..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~--p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566666667777777777777642 111112233333334443322 34455666666555543
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.06 E-value=7.5e+02 Score=26.48 Aligned_cols=48 Identities=17% Similarity=-0.031 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHcC
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI----VAWNMLVEGYCRMG 407 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 407 (583)
-|.-++..+.+.+.++.+.++-+..++... ..|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 567788888888888888888877776321 2222 36777777776554
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.87 E-value=4.3e+02 Score=23.63 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK--PGEALLLWKEIKER 457 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~ 457 (583)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.+. -+....++..+.+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 3467788888899999999999988522111 12333444444444322 23455666666654
No 309
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.34 E-value=2.2e+02 Score=21.40 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 007970 62 NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK 109 (583)
Q Consensus 62 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 109 (583)
..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 456667777788899999999999887667777765567777776644
No 310
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.81 E-value=3.4e+02 Score=22.04 Aligned_cols=169 Identities=12% Similarity=0.055 Sum_probs=93.3
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
.++...-...+..+.+.|.. .+...+..+.. .++...-...+.++...++.+ +...+..+.. .++..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 35666667777777777764 34444444443 256666666667777776543 3333333332 3455555556
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
+.++.+.++.+.. ..+..+.. .++..
T Consensus 102 ~~aL~~~~~~~~~-~~L~~~l~-----------------------------------------------------d~~~~ 127 (211)
T 3ltm_A 102 AVALGQIGDERAV-EPLIKALK-----------------------------------------------------DEDWF 127 (211)
T ss_dssp HHHHHHHCCGGGH-HHHHHHTT-----------------------------------------------------CSSHH
T ss_pred HHHHHHhCcHHHH-HHHHHHHh-----------------------------------------------------CCCHH
Confidence 6666666654322 22222221 36666
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
+-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.+. +.+...+..+.+. ++..+-...+.
T Consensus 128 vr~~a~~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~ 196 (211)
T 3ltm_A 128 VRIAAAFALGEIGDER-AVEPLIKALK------DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVN 196 (211)
T ss_dssp HHHHHHHHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHc------CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHH
Confidence 6677777777777643 4445544443 3566666777777777776 4455555555543 34444433333
Q ss_pred HH
Q 007970 295 GY 296 (583)
Q Consensus 295 ~~ 296 (583)
++
T Consensus 197 aL 198 (211)
T 3ltm_A 197 YL 198 (211)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 311
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.74 E-value=2.4e+02 Score=20.15 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-----HHhCCCcchhHHHH
Q 007970 74 PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI-----LEMGITLCMTTFQS 133 (583)
Q Consensus 74 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~ 133 (583)
.-.|.++.+++...|+.|+..+..-++..|...+- + +.++.++. ...|..|+...++.
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 45678888888889999999888888888877664 2 33332222 23466676666554
No 312
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.68 E-value=3.2e+02 Score=21.67 Aligned_cols=54 Identities=9% Similarity=-0.098 Sum_probs=37.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHhHHHHHHHHHHHH
Q 007970 404 CRMGLVEEAKRIIERMKENGFYP--NVATYGSLAN-G-----ISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+.|++-+|-++++..=...-.+ +...|..||. . ..+.|+...|..++.+....
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34488888888888876543344 4456666666 2 34578888888888888775
No 313
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=20.59 E-value=1.4e+02 Score=25.82 Aligned_cols=190 Identities=13% Similarity=0.036 Sum_probs=82.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT--YNILLKG 295 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 295 (583)
..+...++.|+.+....+++.-... ....+... .+.+...+..|+.+-+..+ .+.|..++... -...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~g-~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANV---NFQEEEGG-WTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTTC-CCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCc---ccccCCCC-CcHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCHHHH
Confidence 4455667788876555554331111 01111111 2345555667877654444 44554443211 1123334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH------------H
Q 007970 296 YCQQLQIDKAKELLREMADDAKIEP---DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS------------Y 360 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------------~ 360 (583)
.+..|+.+-+..+++. +..+ +...++.+.. .+..|+.+ +++.+.+.|..++... -
T Consensus 79 A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSK-----GADVNECDFYGFTAFME-AAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHHTCHHHHHHHHHT-----TCCTTCBCTTCCBHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred HHHcCCHHHHHHHHHc-----CCCCCccCcccCCHHHH-HHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCC
Confidence 4556776655555432 2222 2222223332 33445544 4444555555443220 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 427 (583)
...+...+..|+.+-+..+++...... ...+....+.+ ...+..++.....++++.+.+.|..++
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCC
Confidence 122333445667665555554311110 01111122222 233445555555566666666665544
No 314
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.50 E-value=28 Score=25.96 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC
Q 007970 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250 (583)
Q Consensus 171 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 250 (583)
.+..|.+.+++.+++.+..+=- .|--.|......++.+-|.++++-+...+ +
T Consensus 12 ~~~~ykkN~rw~qSI~L~KkDk----------------------LykDAietAa~S~d~elaEeLL~yFVe~g------~ 63 (125)
T 3qil_A 12 SGLVPRGSHMWKQSVELAKKDS----------------------LYKDAMQYASESKDTELAEELLQWFLQEE------K 63 (125)
T ss_dssp CCCCSSSCCCCSSCCCCCSCCC----------------------CSSHHHHTTTSSCCSHHHHHHHHHHTTSC------S
T ss_pred ccchhhccccHHHHHHHHHhcc----------------------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC------c
Q ss_pred HHHHHHHHHHHHHcCChHHHHHH
Q 007970 251 HVTYTTVVSALVKAGSMDRARQV 273 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~ 273 (583)
...|.+++-.|...=++|-++++
T Consensus 64 kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 64 RECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp HHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hHHHHHHHHHHHhccChHHHHHH
No 315
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=20.28 E-value=2.2e+02 Score=19.51 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=11.2
Q ss_pred HhhhhHHHHHHHHHHHH
Q 007970 490 VRAAFFRKALEIVACME 506 (583)
Q Consensus 490 ~~~g~~~~A~~~~~~~~ 506 (583)
-+.|++++|+.++.+..
T Consensus 22 D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 45677777777666653
Done!