Your job contains 1 sequence.
>007971
MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR
LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC
MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL
GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV
LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY
SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN
LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES
ACPEKIVEFEERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMS
EDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSPVQCRNVSRI
REMSDQPINTIELSDSETEKSPELERKARALRMFIASIRDDIS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007971
(583 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 1539 6.1e-158 1
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 395 1.5e-38 3
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 387 1.6e-37 3
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 390 2.0e-37 3
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 392 4.5e-37 2
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 382 2.5e-34 2
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 380 2.9e-34 2
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 300 8.7e-33 2
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 290 2.8e-31 2
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 330 2.5e-29 1
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 244 5.5e-28 2
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 320 9.6e-27 2
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 243 5.2e-26 2
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 295 1.9e-25 1
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 252 3.2e-25 2
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 240 3.6e-25 2
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 234 6.2e-25 2
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 309 9.5e-25 2
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 238 9.8e-25 2
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 239 1.3e-24 2
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 233 1.4e-24 3
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 245 1.4e-24 2
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 293 1.5e-24 2
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 242 3.0e-24 2
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 242 3.0e-24 2
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 306 4.6e-24 2
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 239 1.6e-22 3
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 243 2.4e-20 2
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 240 8.1e-20 2
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 215 5.5e-16 2
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 215 5.5e-16 2
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 144 1.4e-15 2
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 223 3.6e-15 2
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 192 3.3e-12 1
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 191 4.6e-12 1
WB|WBGene00020442 - symbol:gen-1 species:6239 "Caenorhabd... 188 1.3e-11 2
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 187 1.4e-11 1
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 185 2.2e-11 1
UNIPROTKB|E9PLG0 - symbol:GEN1 "Flap endonuclease GEN hom... 161 6.5e-11 1
UNIPROTKB|E9PM30 - symbol:GEN1 "Flap endonuclease GEN hom... 161 6.5e-11 1
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 181 9.3e-11 1
CGD|CAL0001028 - symbol:orf19.652 species:5476 "Candida a... 148 9.4e-11 3
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 173 2.4e-10 2
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 175 2.9e-10 1
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 171 8.0e-10 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 168 1.4e-09 1
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 168 1.7e-09 1
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 172 2.0e-09 2
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 167 2.2e-09 1
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 166 2.9e-09 1
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 166 2.9e-09 1
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 166 2.9e-09 1
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 165 3.7e-09 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 161 1.0e-08 1
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 161 1.1e-08 1
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 161 1.1e-08 1
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 166 1.1e-08 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 166 1.1e-08 1
UNIPROTKB|G4MVT4 - symbol:MGG_01800 "Flap structure-speci... 135 1.5e-08 2
UNIPROTKB|I3LHP7 - symbol:I3LHP7 "Uncharacterized protein... 138 1.9e-08 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 161 3.3e-08 1
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 161 3.8e-08 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 154 6.4e-08 1
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 164 6.7e-08 3
ASPGD|ASPL0000035217 - symbol:AN3186 species:162425 "Emer... 127 7.1e-08 3
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 166 8.4e-08 2
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 159 1.0e-07 2
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 163 1.2e-07 2
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 163 1.2e-07 2
WB|WBGene00009731 - symbol:exo-1 species:6239 "Caenorhabd... 151 3.4e-07 1
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 144 6.3e-07 2
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 158 9.8e-07 2
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 147 1.2e-06 1
RGD|1586176 - symbol:Ercc5 "excision repair cross-complem... 135 2.4e-06 1
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 151 2.8e-06 2
UNIPROTKB|Q9HD60 - symbol:ERCC5 "DNA repair protein-compl... 130 7.7e-06 1
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 117 3.1e-05 2
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 133 4.6e-05 2
SGD|S000000843 - symbol:YEN1 "Holliday junction resolvase... 90 5.8e-05 3
SGD|S000002671 - symbol:DIN7 "Mitochondrial nuclease func... 126 9.8e-05 1
DICTYBASE|DDB_G0294290 - symbol:DDB_G0294290 "xeroderma p... 134 0.00068 3
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 121 0.00070 1
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
Identities = 312/604 (51%), Positives = 414/604 (68%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LWD+LE CKKT PL HLQNKRVC+DLSCW+V+L VNKSY +K++LRG FHR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LRALIALNC +I VSDG+IP IK+ TY+RRL + E+ D K +SL+RNMGSEFSC
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFS DSDIFLFGA+TVYR+I L
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICL 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
GE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E AC++V+S+GDNV+
Sbjct: 181 GEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGDNVI 240
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L+++ASEGLSF ++ + SKK+ C+ K+ +L + +NG + +R QVIDA+
Sbjct: 241 LEKVASEGLSFAEKPRKSKKQVRPSVCS-KKGTLPLVV-INGNNRDPERLEEIKQVIDAF 298
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
NPKC+ ADS V R LA+ FQ +L ++C QFF+WPPEKTDEYILPK+AER+LRRFAN
Sbjct: 299 MNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAERNLRRFAN 358
Query: 361 LRANTLALGVDLPLQK--VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
L++ + + V+LPL K +P KCP++ IIK+RK+QG+ECFEVSW + GL+SS+VPADL+
Sbjct: 359 LQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLV 418
Query: 419 ESACPEKIVEFEERRALRQXXXXXXXXXAAEIDQKLQALMLDIXXXXXXXXXXXXXXXXX 478
E ACPEKI+EF+E+ A ++ + ++++
Sbjct: 419 ERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDLNSTSLVSR 478
Query: 479 XX-EDWTAATEIDLTRRQDLL--LDAESKSNAN------------MSCYPTGSTAAKAEI 523
E+ E +++ D L +D+ + N N MS +P + E+
Sbjct: 479 STLEEAEQENEQQNSKKHDYLRLIDSPDRENCNNAWSNRDRLGVGMSSFPL---YPETEV 535
Query: 524 IDLVSPSP-VQCRNVSRI---REMSDQPINTIELSDSETEKSPELE-RKARALRMFIASI 578
IDL+SP P + R+VSR ++ D + T+ + S++E E +KAR LR+F+ +I
Sbjct: 536 IDLISPCPEARSRSVSRSYQEQKSHDHQLETV-IELSDSETDDEEHCKKARELRIFLQNI 594
Query: 579 RDDI 582
R DI
Sbjct: 595 RKDI 598
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 395 (144.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 92/245 (37%), Positives = 135/245 (55%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LH L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTVKKMIGTVM-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R ++V K S + S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPHLKADVISKR----NQVRYGPSG--KTWSQKTGR-SHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A +++K +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQ 232
Query: 239 VVLQR 243
+LQR
Sbjct: 233 SLLQR 237
Score = 66 (28.3 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 382 PITGIIKSRKLQGKECFEVSWE--ESYGLKS--------SVVPADLIESACPEKIVEFEE 431
PI I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +++
Sbjct: 400 PIR-IVKNRIRNGVHCFEIEWEKPEHYTIEDKHGELAVQTIEEESLFEAAYPEIVAIYQK 458
Query: 432 RRA 434
+++
Sbjct: 459 QKS 461
Score = 44 (20.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 20/89 (22%), Positives = 40/89 (44%)
Query: 484 TAATEIDLTRRQDLLLDAESKS--NANMSCYPTGSTAAKAEIID----LVSPSPVQCRNV 537
+A+ E ++ ++LL AE + A + + A +I D L++ S +
Sbjct: 517 SASPEESISTSLNVLLLAEDAACLTAQEQLISSPRSLAMQQIKDISKSLIAESSQPSTSS 576
Query: 538 SRIREMSDQPINTIELSDSETEKSPELER 566
I ++D ++TI+ + KSP + R
Sbjct: 577 HNISAVADLHLSTIDWEGTSFSKSPAISR 605
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 387 (141.3 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 89/245 (36%), Positives = 135/245 (55%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW +LE K+ + L+ L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCEAQTVKKMIGTVM-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R +++ K S + S F
Sbjct: 60 ISCLTLMDVKLVFVMEGEPPKLKADVINKR----NQIRYGPSG--KTWSHKTGR-SHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ LG R+SL+ LA+LLG DY +GV G+G E A +++K++
Sbjct: 173 NTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQALKLIKTLKGQ 232
Query: 239 VVLQR 243
+LQR
Sbjct: 233 SLLQR 237
Score = 68 (29.0 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 382 PITGIIKSRKLQGKECFEVSWE--------ESYG--LKSSVVPADLIESACPEKIVEFEE 431
PI I+K+R G CFE+ WE + YG + ++ L E+A PE + +++
Sbjct: 399 PIR-IVKTRIRNGVRCFEIEWEKPEHYTTEDEYGELVLQTIEEESLFEAAYPEIVAIYQK 457
Query: 432 RRA 434
+++
Sbjct: 458 QKS 460
Score = 46 (21.3 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 513 PTGSTAAKAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKA 568
P KA L++ S + I ++D ++TI+ + SP + R A
Sbjct: 551 PLARQQIKAVSKSLIAESSQPSTSTHNISAIADLHLSTIDWEGTSFSNSPAISRSA 606
Score = 41 (19.5 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 254 RAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR-ETP 292
+ + K FK N+ +S N + + T+ +Q +TP
Sbjct: 821 KQSSQKHSPAQFKKNDTNKSSNPKTRIKETEQGIQAYKTP 860
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 390 (142.3 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 89/245 (36%), Positives = 136/245 (55%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R + S K+ + + S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR--NQSRYGSSGKSWSQKTGR-----SHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQR 243
+LQR
Sbjct: 233 SLLQR 237
Score = 66 (28.3 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 382 PITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEFE 430
PI I+K+R G CFE+ WE E Y ++ ++ L E+A PE + ++
Sbjct: 399 PIR-IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVYQ 457
Query: 431 ERR 433
+++
Sbjct: 458 KQK 460
Score = 42 (19.8 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 510 SCYPTGSTAAKAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELER 566
S P KA L+S S + I ++D ++TI+ + SP ++R
Sbjct: 547 SLRPLAIQQIKAVSKSLISESSQPNTSSHNISVIADLHLSTIDWEGTSFSNSPAIQR 603
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 392 (143.0 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 91/245 (37%), Positives = 135/245 (55%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LHHL K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLHHLCGKTIAVDLSLWVCEAQTVKKMIGTVM-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K RR +++ K S + S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPKLKADVISRR----NQIRYGPSG--KTWSQKAGR-SHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQR 243
+LQR
Sbjct: 233 SLLQR 237
Score = 68 (29.0 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 382 PITGIIKSRKLQGKECFEVSWE--ESYGLKS--------SVVPADLIESACPEKIVEFEE 431
PI I+KSR G CFE+ WE E Y ++ ++ L E+A PE + +++
Sbjct: 398 PIR-IVKSRIRNGIHCFEIEWEKPEHYAIEDQHGELVLQTIEEKSLFEAAYPEIVAVYQK 456
Query: 432 R 432
+
Sbjct: 457 Q 457
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 382 (139.5 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 89/245 (36%), Positives = 132/245 (53%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGT-VKKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L +N L+FV +G P +K +R TQ S ++ S F
Sbjct: 60 ISYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 173 NTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQ 232
Query: 239 VVLQR 243
+LQR
Sbjct: 233 SLLQR 237
Score = 56 (24.8 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 382 PITGIIKSRKLQGKECFEVSWE--ESYGL------KSSVVP---ADLIESACPEKIVEFE 430
PI I+K R G C E+ WE E Y + K S++ A L E+A P+ + ++
Sbjct: 398 PIR-IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVYQ 456
Query: 431 ER 432
++
Sbjct: 457 KQ 458
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 380 (138.8 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 89/245 (36%), Positives = 133/245 (54%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQTVKKMIGTVM-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L +N L+FV +G P +K +R TQ S ++ S F
Sbjct: 60 ISYLTQMNVKLVFVMEGEPPKLKADVMNKR-------TQTRYGPSGKSRSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQILKGQ 232
Query: 239 VVLQR 243
+LQR
Sbjct: 233 SLLQR 237
Score = 58 (25.5 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 382 PITGIIKSRKLQGKECFEVSWE--ESYGLKSS---------VVPADLIESACPEKIVEFE 430
PI I+K R G C E+ WE E Y ++ + + A L E+A PE + ++
Sbjct: 398 PIR-IVKPRIRNGVCCLEIEWEKPEHYSVEDTQPGGLDLLTIEEASLFEAAYPEVVAIYQ 456
Query: 431 ERRA 434
++++
Sbjct: 457 KQQS 460
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 300 (110.7 bits), Expect = 8.7e-33, Sum P(2) = 8.7e-33
Identities = 92/278 (33%), Positives = 140/278 (50%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 909 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 968
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 969 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1027
Query: 225 PESACQIVKSVGDNVVLQRIAS--EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 282
+A ++V + + LQ+ E K K G K N+ I ++G
Sbjct: 1028 IVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGI-ISG 1086
Query: 283 --TDHSLQRETPFS----QVIDAYSNPKCYSADSEAVHRV-------LAQHLFQHAR--- 326
TD + + + F +V + P + SEAV L+ F +
Sbjct: 1087 ASTDDTEEIKQIFMDQHRKVSKNWHIPLTFP--SEAVISAYLNPQVDLSTEKFSWGKPDL 1144
Query: 327 --LHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLR 362
L ++C + F W +KTDE +LP + E + +R LR
Sbjct: 1145 SVLRKLCWEKFNWNGKKTDELLLPVLKEYE-KRETQLR 1181
Score = 143 (55.4 bits), Expect = 8.7e-33, Sum P(2) = 8.7e-33
Identities = 37/110 (33%), Positives = 56/110 (50%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR-PQTDKLFLRGLFH 59
MGV+ LW++L + + + L NKR+ ID S W+VQ + + L G F
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHLIGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQDDKNLDKM 107
R+ L+ L IFV DG+ PA+K T RRR ++ T+ K +K+
Sbjct: 61 RICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQ-TKIRKTAEKL 109
Score = 42 (19.8 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 340 EKTDEYILPKIAERDLRRFANLRANTLALGV 370
EK DE + +A + R F + +A+T A +
Sbjct: 225 EKLDEMLAASLAAEEERNFTS-KASTSAAAI 254
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 290 (107.1 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 85/275 (30%), Positives = 141/275 (51%)
Query: 84 LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 143
LST R N +D+ ++ +R+ MIKE + L G+P + EA
Sbjct: 735 LSTSAER-NVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEA 793
Query: 144 EAQCA-LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGR 202
EAQCA LL L +L DG + DSD+FLFG +Y++++ E+ YV Y+ + I + LG R
Sbjct: 794 EAQCAELLQL-NLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYDAESILKLLGLDR 851
Query: 203 NSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEG 262
++I LA LLGSDY+ G++G+GP S+ +++ G+ + + G F KR + ++ +
Sbjct: 852 KNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKNFKDWYNNG-QFDKRKQETENK- 909
Query: 263 WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLF 322
F+ + +++ +N EI L + P V DAY P+ + V V +
Sbjct: 910 --FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDML 960
Query: 323 QHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+ Q+ WP EK+DE ++P I + + R+
Sbjct: 961 RSFMKTQL-----GWPHEKSDEILIPLIRDVNKRK 990
Score = 135 (52.6 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 35/118 (29%), Positives = 55/118 (46%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLD-KMSSLRRNMGS 116
R+ L+ +FV DG +P +K T R+R + K+ K+ +L+ GS
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKERRQGKRESAKSTARKLLALQLQNGS 118
Score = 42 (19.8 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
FV D S+ A +L + LN+ + DK D+ S
Sbjct: 384 FVEDFSLKAARLPYMGQSLNNAGSKSFLDKRHDQAS 419
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 330 (121.2 bits), Expect = 2.5e-29, P = 2.5e-29
Identities = 88/253 (34%), Positives = 131/253 (51%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS------YR--PQTD-K 51
MGV NLW ILE ++ + L L+ K + +DL + + N++ Y P T +
Sbjct: 1 MGVNNLWQILEPVRQPVSLSSLKGKTLAVDLRFTYMYICYKNRTCLKRSAYPLLPMTKIQ 60
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
L L LF R ++ L+FV +G P +K T +R +E+ N ++
Sbjct: 61 LNLENLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKR----NEIRYGASNKHGVARTG 116
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R S F ++KE L LGVP ++ EAEA CA LN + DGC ++D D+FL+GA
Sbjct: 117 R---SSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGA 173
Query: 172 RTVYRDI-----------WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQG 219
+TVYR+ W + ++ CY M I+ KLG R SLI LA+LLG DY +G
Sbjct: 174 QTVYRNFAMNSKSSQKCTWKLKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKG 233
Query: 220 VRGLGPESACQIV 232
+ G+G E A +++
Sbjct: 234 IPGVGKEQALKLI 246
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 244 (91.0 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 82/258 (31%), Positives = 125/258 (48%)
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIF 167
S +R+ MIKE + L G+P + +EAEAQC+ LL L+ L DG + DSD+F
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELK-LVDGIVTDDSDVF 802
Query: 168 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
LFG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP
Sbjct: 803 LFGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVL 861
Query: 228 ACQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 286
A +I+ GD GL K+ G + K N+ + + IN
Sbjct: 862 ALEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGKII 911
Query: 287 LQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYI 346
L E P V +AY +P DS+ + L + L Q W ++T+E +
Sbjct: 912 LPSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDLDE---LRQFLMATVGWSKQRTNEVL 966
Query: 347 LPKIAERDLRRFANLRAN 364
LP I + ++F ++N
Sbjct: 967 LPVIQDMHKKQFVGTQSN 984
Score = 154 (59.3 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LWDILE K+ + L L NKR+ ID S WI Q L+ V Q + G F
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P++K T ++R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKR 91
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 320 (117.7 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
Identities = 85/260 (32%), Positives = 134/260 (51%)
Query: 1 MGVKNLWDILES-CKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY-RPQTDKLFLRGLF 58
MGVK LW +L C++ P++ L+ K+V IDL+ W+ + NV + P+ L+ LF
Sbjct: 1 MGVKELWGVLTPHCERK-PINELRGKKVAIDLAGWVCESLNVVDYFVHPRHH---LKNLF 56
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG--- 115
R LI +FV +G P +K +R N KN + + + + G
Sbjct: 57 FRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKR-NELQFRGVKPKNSPECTQSQPSKGDKG 115
Query: 116 -SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 174
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA V
Sbjct: 116 RSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRV 175
Query: 175 YRDIWLGERGY-------VVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 226
YR+ + +G V Y+M +I ++ FG+ +I +ALL G DY G+ G+G +
Sbjct: 176 YRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKD 235
Query: 227 SACQIVKSVGDNVVLQRIAS 246
++ + +L R+ S
Sbjct: 236 GVLKLFNKYKETEILDRMRS 255
Score = 53 (23.7 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 386 IIKSRKLQGKECFEVSWEESYGLKSSVVPADLI---ESACPEKIVE 428
IIK R ++G E+ W + G+ ++P I E+ P+ I E
Sbjct: 404 IIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEE 449
Score = 50 (22.7 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 384 TGIIKSRKLQGKECFEVSWEESYGLKS---SVVPADLIESACPEKIVEFEERRALRQXXX 440
+GI K + K+ E E G++ ++ P D++E+A P+ + F + +
Sbjct: 424 SGIFKGL-IPDKQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKEKPAKKT 482
Query: 441 XXXXXXAAEIDQK 453
A+E + K
Sbjct: 483 TRKKKTASEEENK 495
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 243 (90.6 bits), Expect = 5.2e-26, Sum P(2) = 5.2e-26
Identities = 74/240 (30%), Positives = 113/240 (47%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 784 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF- 842
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 843 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 893
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 297
L GL +++ E W NK+ N + V LQ F V
Sbjct: 894 LNEFPGHGLEPLRKFS----EWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVA 949
Query: 298 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
DAY P D + + ++ + C ++F W KTDE + P + + ++ +
Sbjct: 950 DAYLKPV---VDESKGSFLWGKPDLD--KIREFCQRYFGWNRTKTDESLFPVLKQLNVHQ 1004
Score = 137 (53.3 bits), Expect = 5.2e-26, Sum P(2) = 5.2e-26
Identities = 33/103 (32%), Positives = 49/103 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
RL L+ IFV DG P +K T +R + D K
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAASDSK 103
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 295 (108.9 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 70/191 (36%), Positives = 106/191 (55%)
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
K LR LF R ++ L+FV +G P +K T +R +E+ N ++
Sbjct: 7 KPHLRNLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKR----NEIRYGASNKHGVART 62
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
R S F ++KE L LGVP ++ EAEA CA LN + DGC ++D D+FL+G
Sbjct: 63 GR---SSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYG 119
Query: 171 ARTVYRDIWLGER-----GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLG 224
A+TVYR+ + + ++ CY M I+ KLG R SLI LA+LLG DY +G+ G+G
Sbjct: 120 AQTVYRNFAMNSKLSFKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVG 179
Query: 225 PESACQIVKSV 235
E A ++++++
Sbjct: 180 KEQALKLIETL 190
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 252 (93.8 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 78/241 (32%), Positives = 117/241 (48%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 716 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFS 775
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ YV Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 776 RNK-YVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 825
Query: 241 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLN-QEINVNGTDHSLQRETPFSQ--V 296
L GL +K A E W+ NK+ N ++ V LQ + F V
Sbjct: 826 LNEFPGHGLEPLLKFA-----EWWNEAQKNKKIRPNPRDTKVKKKLRELQLSSGFPNPAV 880
Query: 297 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 356
+AY P D + + + R + C F W KTDE +LP I + +L+
Sbjct: 881 AEAYLKPV---VDETRGSFIWGKPDVEQIR--EFCKDHFGWTRTKTDEILLPVIKQLNLQ 935
Query: 357 R 357
+
Sbjct: 936 Q 936
Score = 119 (46.9 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ V + L LF+
Sbjct: 1 MGVQGLWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHLLTLFN 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKM 107
RL L+ +FV DG P +K T +RR V K +K+
Sbjct: 61 RLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAEKL 109
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 240 (89.5 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 76/235 (32%), Positives = 109/235 (46%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 769 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF- 827
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 828 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 878
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 297
L GL + + E W NK+ N + V LQ F V
Sbjct: 879 LNEFPGHGLEPLLKFS----EWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVA 934
Query: 298 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 352
DAY P DS L ++ + C ++F W KTDE + P + +
Sbjct: 935 DAYLKPVV--DDSRGSFLWGKPDL---DKIREFCQRYFGWNRTKTDESLFPVLKQ 984
Score = 132 (51.5 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 35/109 (32%), Positives = 50/109 (45%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LE + + L+ K + +D+S W+ Q L+ V + L LFH
Sbjct: 1 MGVHGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALRGVRDCHGNSIGNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKM 107
RL L+ IFV DG P +K T +RR T K +K+
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLAATDSRKTTEKL 109
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 234 (87.4 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
Identities = 76/231 (32%), Positives = 108/231 (46%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFF- 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 297
L GL + + E W NNK+ + N + V LQ F V
Sbjct: 877 LNEFPGRGLDPLLKFS----EWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVA 932
Query: 298 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
DAY P DS + ++ C ++F W KTDE + P
Sbjct: 933 DAYLRPVV--DDSRGSFLWGKPDV---DKISTFCQRYFGWNRMKTDESLYP 978
Score = 136 (52.9 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
Identities = 36/109 (33%), Positives = 52/109 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKM 107
RL L+ IFV DG P +K T +RR S K +K+
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDSRKTTEKL 109
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 309 (113.8 bits), Expect = 9.5e-25, Sum P(2) = 9.5e-25
Identities = 80/255 (31%), Positives = 131/255 (51%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY-RPQTDKLFLRGLFH 59
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + P+ L+ LF
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHH---LKNLFF 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE-VTQDDKNLDKMSSLRRNMG-SE 117
R LI +FV +G P +K +R V D ++ + + G +
Sbjct: 58 RTCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAKVDKGRTR 117
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F+ ++K+ + L LS+G+ C++G EAEA A LN L DG S DSD F +GA VYR+
Sbjct: 118 FNHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRN 177
Query: 178 IWLGERGY-------VVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESAC 229
+ +G V Y+M +I ++ FG++ +I +ALL G DY G+ G+G +
Sbjct: 178 FSVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVL 237
Query: 230 QIVKSVGDNVVLQRI 244
++ ++ +L R+
Sbjct: 238 KLFNKYKESEILDRL 252
Score = 47 (21.6 bits), Expect = 9.5e-25, Sum P(2) = 9.5e-25
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 395 KECFEVSWEESYGLKS---SVVPADLIESACPEKIVEF 429
K+ E E G++ +V P D++E+A P+ + F
Sbjct: 438 KQISEFELEHPKGIEELYYTVEPLDMLEAAYPDLVASF 475
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 238 (88.8 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
Identities = 71/237 (29%), Positives = 116/237 (48%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFF- 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+ +
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHG- 885
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L+ + + + KN K + N + + +++ L P V +AY
Sbjct: 886 LEPLLKFSEWWHEAQKNPK-----IRPNPHDTKVKKKLRTL----QLTPGFPNPAVAEAY 936
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
P DS+ L ++ + C ++F W KTDE + P + + D ++
Sbjct: 937 LKPVV--DDSKGSFLWGKPDL---DKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQ 988
Score = 130 (50.8 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
Identities = 34/109 (31%), Positives = 52/109 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD-KNLDKM 107
RL L+ IFV DG P +K T +R + D K +K+
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKL 109
Score = 37 (18.1 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 74 VSDGSIPAIKLSTYRRRLNSGSEV 97
V +GSI LS +R L+ +V
Sbjct: 378 VDEGSISPRTLSAIKRALDDDEDV 401
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 239 (89.2 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 80/262 (30%), Positives = 125/262 (47%)
Query: 96 EVTQDDKNL-DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 154
E+ + + L ++ +R+ + M +E++ L GVP + EAEAQCA L+
Sbjct: 632 ELQDEQQTLREQHQQQQRSSSTVTGQMCQESQELLRLFGVPFIVAPMEAEAQCAALDRLD 691
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
G + DSDI+LFG R VYR+ + + YV Y++ D++ +LG R+ LI LA LLGS
Sbjct: 692 QTHGTITDDSDIWLFGGRHVYRNFF-NQNKYVEHYQIVDMQNQLGLDRSKLINLAYLLGS 750
Query: 215 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESL 274
DY++G+ G+G + +I L GL + + E W+ NK+ S+
Sbjct: 751 DYTEGIPGVGYVTGMEI---------LNEFPGAGLEPLVQLS----EWWTEAQENKKLSV 797
Query: 275 N-QEINVNGTDHSLQRETPFSQ--VIDAYSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV 330
N ++ V +LQ F V AY P S D S+A HL + +
Sbjct: 798 NPKDTKVKKKLRNLQIHPGFPNPAVAQAYLQP---SVDQSDASFSWGRPHL---DLIKEF 851
Query: 331 CAQFFQWPPEKTDEYILPKIAE 352
C F W KT+E + P + +
Sbjct: 852 CQSRFGWSSRKTEETLQPVLKQ 873
Score = 126 (49.4 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 32/103 (31%), Positives = 47/103 (45%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LES K + L+ K + +D+S W+ Q ++ V L LFH
Sbjct: 1 MGVHGLWKLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDRDGNAVQNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
RL L+ +FV DG P +K T R E ++ +
Sbjct: 61 RLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQRREETNRESR 103
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 233 (87.1 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 60/149 (40%), Positives = 85/149 (57%)
Query: 91 LNSG--SEVTQD-DKNLDKMSSL----RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 143
LNS SE T D ++ L ++ S RR+ MI E + L G+P + EA
Sbjct: 771 LNSAPHSEGTFDYEQELKQLRSQQKKDRRDADEVTQIMITECQQLLRLFGLPYITAPMEA 830
Query: 144 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN 203
EAQCA L L DG + DSDIFLFG VY++++ + YV CY D+E++ R
Sbjct: 831 EAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF-NQSKYVECYLTADLEKEYALHRR 889
Query: 204 SLITLALLLGSDYSQGVRGLGPESACQIV 232
LI+ A LLGSDY++G+ G+GP +A +I+
Sbjct: 890 KLISFAHLLGSDYTEGIPGIGPVTALEIL 918
Score = 130 (50.8 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW I++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVQGLWTIVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTIANR 91
Score = 48 (22.0 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 337 WPPEKTDEYILPKIAERDLRRFANLRAN 364
W E+TDE ++P I + + R ++N
Sbjct: 1006 WSQERTDEVLVPVIRDINQREQEGTQSN 1033
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 245 (91.3 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 81/283 (28%), Positives = 134/283 (47%)
Query: 81 AIKLSTYRRRLNS-GSEVTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLE 138
A+ +T++ L ++++ + + L + + + + M E++ L G+P +E
Sbjct: 743 ALSQNTFQEELEELENDLSAEQEMLQSQKQQQERVATSVTGQMFLESQELLRLFGIPYIE 802
Query: 139 GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKL 198
EAEAQCA+L+L G + DSD++LFGAR VY++ + + YV Y+ D + +L
Sbjct: 803 APMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFSRNK-YVEYYQYIDFQNQL 861
Query: 199 GFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLS-FVKRAKN 257
G R+ LI LA LLGSDY++G+ +G +A +I L GL +K A
Sbjct: 862 GLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI---------LNEFPGHGLEPLLKFA-- 910
Query: 258 SKKEGWSFKCNNKEESLN-QEINVNGTDHSLQRETPFSQ--VIDAYSNPKCYSADSEAVH 314
E W+ NK+ N ++ V LQ + F V +AY P D
Sbjct: 911 ---EWWNEAQKNKKIRPNPRDTKVKKKLRELQLSSGFPNPAVAEAYLKPV---VDETRGS 964
Query: 315 RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+ + + R + F W KTDE +LP I + +L++
Sbjct: 965 FIWGKPDVEQIREYPF--NHFGWTRTKTDEILLPVIKQLNLQQ 1005
Score = 119 (46.9 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ V + L LF+
Sbjct: 1 MGVQGLWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHLLTLFN 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKM 107
RL L+ +FV DG P +K T +RR V K +K+
Sbjct: 61 RLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAEKL 109
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 293 (108.2 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 67/175 (38%), Positives = 102/175 (58%)
Query: 71 LIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 130
L+FV +G P +K T +R +E+ N ++ R S F ++KE L
Sbjct: 5 LVFVMEGEAPKLKADTMSKR----NEIRYGASNKHGVARTGR---SSFKSILKECLQLLE 57
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCY 189
LGVP ++ EAEA CA LN + DGC ++D D+FL+GA+TVYR+ + + ++ CY
Sbjct: 58 CLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKEPHLDCY 117
Query: 190 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQR 243
M I+ KLG R SLI LA+LLG DY +G+ G+G E A ++++++ +LQR
Sbjct: 118 TMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETLRGQNLLQR 172
Score = 55 (24.4 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 386 IIKSRKLQGKECFEVSWEE-SYGLKSSVVPADL 417
I+K+R G CFE+ W++ + + + P DL
Sbjct: 337 IVKTRVKNGIPCFEIEWQKPEHYVDAEDEPMDL 369
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 242 (90.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 51/143 (35%), Positives = 81/143 (56%)
Query: 95 SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 154
+ +T + +K +R+ MI + + L G+P + EAEAQCA L
Sbjct: 703 TRITDEQLLQEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIG 762
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
L DG + DSD FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGS
Sbjct: 763 LVDGIVTDDSDCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGS 821
Query: 215 DYSQGVRGLGPESACQIVKSVGD 237
DY++G++G+GP A +I+ G+
Sbjct: 822 DYTEGIKGIGPVQAMEILAEFGN 844
Score = 119 (46.9 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 33/104 (31%), Positives = 49/104 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LW I+ + + L L K++ ID S WI Q L+ + + G F
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY---RRRLNSGSEVTQD 100
R+ L+ IFV DG +PA+K T ++R SE Q+
Sbjct: 61 RICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNSESRQE 104
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 242 (90.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 51/143 (35%), Positives = 81/143 (56%)
Query: 95 SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 154
+ +T + +K +R+ MI + + L G+P + EAEAQCA L
Sbjct: 703 TRITDEQLLQEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIG 762
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
L DG + DSD FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGS
Sbjct: 763 LVDGIVTDDSDCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGS 821
Query: 215 DYSQGVRGLGPESACQIVKSVGD 237
DY++G++G+GP A +I+ G+
Sbjct: 822 DYTEGIKGIGPVQAMEILAEFGN 844
Score = 119 (46.9 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 33/104 (31%), Positives = 49/104 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LW I+ + + L L K++ ID S WI Q L+ + + G F
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY---RRRLNSGSEVTQD 100
R+ L+ IFV DG +PA+K T ++R SE Q+
Sbjct: 61 RICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNSESRQE 104
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 306 (112.8 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 84/258 (32%), Positives = 130/258 (50%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+ +RV +DLS W+V ++ P LR LF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV-------TQDDKNLDKMSSLR 111
R +L + + +FV DG +K R GS + T+ + + D + R
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADALVQPR 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA
Sbjct: 121 N---AKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGA 177
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+TV + + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A +
Sbjct: 178 KTVIKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALR 237
Query: 231 IVKSVGDNVVLQRIASEG 248
V+ ++ VL ++ G
Sbjct: 238 FVQLFDEDNVLAKLYEIG 255
Score = 40 (19.1 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 416 DLIESACPEKIVEFEERRALRQ 437
+L+ +A P++ F+E + L++
Sbjct: 536 ELVNAAFPDEAQRFQEEQRLKE 557
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 239 (89.2 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 78/288 (27%), Positives = 132/288 (45%)
Query: 95 SEVTQDDKNLDKMSSLRRNMGSEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLE 153
+ + Q+ K L+ + + MG S + + + L G+P + EAEAQCA LN
Sbjct: 853 TNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNAT 912
Query: 154 SLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 213
L G + DSDI+LFG RTVY++ + + +V+ + + IE+ R LI LA L+G
Sbjct: 913 DLTHGTITDDSDIWLFGGRTVYKNFF-AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG 971
Query: 214 SDYSQGVRGLGPESACQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGW-SFKCNNKE 271
SDY+ G+ G+G +A +I+ S G + I ++ V + ++ W + KC+N
Sbjct: 972 SDYTTGIHGIGAVTALEILASFSGQDANGPGICNQS---VLQTLIKFRDWWQAHKCSNLP 1028
Query: 272 ESLNQEINVNGT--DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQ 329
+ + + + L P V++AY P + D + + +
Sbjct: 1029 PGSSARLALRKKLKNIELHEGFPSGAVVEAYLAP---TIDDN--RDAFSWGTPDVESIRE 1083
Query: 330 VCAQFFQWPPEKTDEYILP---KIAERDLR-RFANLRANTLALGVDLP 373
+ F W KTD+ ++P KI E+ ++ N AL V P
Sbjct: 1084 FTRKSFGWTTSKTDDILMPVMKKINEKKIQGSIRNYFTAKSALRVQQP 1131
Score = 87 (35.7 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 30 DLSCWIVQL-QNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYR 88
D+S W+ Q+ + + L GLFHRL L+ +F+ DG +P +K T
Sbjct: 51 DISIWLHQVVKGFQDNKGSALSNAHLLGLFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIA 110
Query: 89 RRLNSGSEVTQD 100
RR ++++ +
Sbjct: 111 RRQQQRNKLSNE 122
Score = 66 (28.3 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCI 29
MGV LW ++E C K +P+ L+ K + +
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAV 29
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 243 (90.6 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 74/240 (30%), Positives = 113/240 (47%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1198 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF- 1256
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1257 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1307
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 297
L GL +++ E W NK+ N + V LQ F V
Sbjct: 1308 LNEFPGHGLEPLRKFS----EWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVA 1363
Query: 298 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
DAY P D + + ++ + C ++F W KTDE + P + + ++ +
Sbjct: 1364 DAYLKPV---VDESKGSFLWGKPDLD--KIREFCQRYFGWNRTKTDESLFPVLKQLNVHQ 1418
Score = 86 (35.3 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 30 DLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYR 88
++S W+ Q L+ V + + L LFHRL L+ IFV DG P +K T
Sbjct: 454 NISIWLNQALKGVRDRHGNSIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLA 513
Query: 89 RRLNSGSEVTQDDK 102
+R + D K
Sbjct: 514 KRRHKKDLAASDSK 527
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 240 (89.5 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 76/235 (32%), Positives = 109/235 (46%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1184 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF- 1242
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1243 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1293
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 297
L GL + + E W NK+ N + V LQ F V
Sbjct: 1294 LNEFPGHGLEPLLKFS----EWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVA 1349
Query: 298 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 352
DAY P DS L ++ + C ++F W KTDE + P + +
Sbjct: 1350 DAYLKPVV--DDSRGSFLWGKPDL---DKIREFCQRYFGWNRTKTDESLFPVLKQ 1399
Score = 84 (34.6 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 25/80 (31%), Positives = 35/80 (43%)
Query: 30 DLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY- 87
++S W+ Q L+ V + L LFHRL L+ IFV DG P +K T
Sbjct: 455 NISIWLNQALRGVRDCHGNSIGNAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLA 514
Query: 88 RRRLNSGSEVTQDDKNLDKM 107
+RR T K +K+
Sbjct: 515 KRRHRKDLAATDSRKTTEKL 534
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 215 (80.7 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 67/227 (29%), Positives = 111/227 (48%)
Query: 96 EVTQDDKNLDK-MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 154
E ++++ L K L++N M + K L G+P ++ EAEAQC+ LN ++
Sbjct: 1185 ETNKENEELIKEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKN 1244
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
CD S DSD+ +F +TV ++ + ++ V YE IE KLG + LI ++LL G
Sbjct: 1245 YCDAIISDDSDVLVFSGKTVIKNFF-NKKKTVEVYEKKAIEEKLGLYQEELINISLLCGC 1303
Query: 215 DYSQGVRGLGPESACQIVKSVG---DNVVLQRIASEGLSFVKRAKNS-KKEGWSFKCNNK 270
DY+ GV G+G +A +I+K+ D +L+ I S F K KN +E F +K
Sbjct: 1304 DYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIVSN--PFRKIDKNMYNEEIQQFLNTHK 1361
Query: 271 EESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVL 317
LN N D + + + +V + + D +++ + L
Sbjct: 1362 NYKLNWIFPNNFPDREVYKCFKYPKVCTDIKKFEWHVPDIKSITKFL 1408
Score = 73 (30.8 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVN 42
MGVK LW I+ + KR+ ID+S W+ +L N
Sbjct: 1 MGVKGLWSIVSPVGVRVNPEIFTGKRIAIDVSIWLYELTYAN 42
Score = 65 (27.9 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 24/95 (25%), Positives = 41/95 (43%)
Query: 15 KTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFHRLRALIALNCGLIF 73
K L N + DL WI +N++ + K L F R+ L+ N IF
Sbjct: 45 KDLRNKSFDNMSIFNDL--WIDFSENISSEIKTDNIKKAHLYFFFLRICKLLYYNIRPIF 102
Query: 74 VSDGSIPAIKLST-YRRRLNSGSEVTQDDKNLDKM 107
+ DG+ P +K T ++R + + + K +K+
Sbjct: 103 IFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAEKL 137
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 215 (80.7 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 67/227 (29%), Positives = 111/227 (48%)
Query: 96 EVTQDDKNLDK-MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 154
E ++++ L K L++N M + K L G+P ++ EAEAQC+ LN ++
Sbjct: 1185 ETNKENEELIKEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKN 1244
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
CD S DSD+ +F +TV ++ + ++ V YE IE KLG + LI ++LL G
Sbjct: 1245 YCDAIISDDSDVLVFSGKTVIKNFF-NKKKTVEVYEKKAIEEKLGLYQEELINISLLCGC 1303
Query: 215 DYSQGVRGLGPESACQIVKSVG---DNVVLQRIASEGLSFVKRAKNS-KKEGWSFKCNNK 270
DY+ GV G+G +A +I+K+ D +L+ I S F K KN +E F +K
Sbjct: 1304 DYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIVSN--PFRKIDKNMYNEEIQQFLNTHK 1361
Query: 271 EESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVL 317
LN N D + + + +V + + D +++ + L
Sbjct: 1362 NYKLNWIFPNNFPDREVYKCFKYPKVCTDIKKFEWHVPDIKSITKFL 1408
Score = 73 (30.8 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVN 42
MGVK LW I+ + KR+ ID+S W+ +L N
Sbjct: 1 MGVKGLWSIVSPVGVRVNPEIFTGKRIAIDVSIWLYELTYAN 42
Score = 65 (27.9 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 24/95 (25%), Positives = 41/95 (43%)
Query: 15 KTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFHRLRALIALNCGLIF 73
K L N + DL WI +N++ + K L F R+ L+ N IF
Sbjct: 45 KDLRNKSFDNMSIFNDL--WIDFSENISSEIKTDNIKKAHLYFFFLRICKLLYYNIRPIF 102
Query: 74 VSDGSIPAIKLST-YRRRLNSGSEVTQDDKNLDKM 107
+ DG+ P +K T ++R + + + K +K+
Sbjct: 103 IFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAEKL 137
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 144 (55.7 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 40/104 (38%), Positives = 53/104 (50%)
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 192
G+P +E EAEAQC L L DG S DSD++ FGA+ VYR ++ R E
Sbjct: 480 GIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHMFSKNRRVQRYGEQT 539
Query: 193 DIER---KLG-FGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
R KL R I++ALL G DY G+ +G A ++V
Sbjct: 540 TANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALELV 583
Score = 137 (53.3 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 35/114 (30%), Positives = 58/114 (50%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG+ LW I+E +PL L+ K++ ID+S WI Q Q S +P LR L +R
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIYQAQLAYPSDQPFPH---LRLLVNR 57
Query: 61 LRALIALNCGLIFVSDG-SIPAIK---LSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L L+ +FV DG +P +K L R++ + ++ ++ K + K+ +
Sbjct: 58 LSKLLFYKIRPVFVFDGPQVPPLKRQVLEARRQKRQNDDDILKNSKKMGKLKEI 111
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 390 RKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVE 428
R+ G E E EE K + D+IE + E +++
Sbjct: 363 RQHYGTETVEDKKEEEKRKKEQRIEDDMIEVSDDEMVLQ 401
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 223 (83.6 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1156 MFLESQELLRLFGVPYIEAPMEAEAQCAILDLSDQTSGTITDDSDIWLFGARHVYKNFF- 1214
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+
Sbjct: 1215 NKNKFVEYYQYVDFHSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEIL 1266
Score = 57 (25.1 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 326 RLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANT 365
++ + C ++F W KTDE + P + + + ++ LR ++
Sbjct: 1337 KIREFCQRYFGWNRTKTDESLFPVLKQLNAQQ-TQLRIDS 1375
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 192 (72.6 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 81/319 (25%), Positives = 142/319 (44%)
Query: 12 SCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQ-TDK-----LFLRGLFHRLRAL 64
S K L +L ++V ID S + Q L V +S Q T++ L G+F+R +
Sbjct: 16 SAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSGMFYRTIKM 75
Query: 65 IALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEF 118
+ N ++V DG P +K +RL E + D+ ++++ + +
Sbjct: 76 VENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGTVEEVLKFEKRLVRVT 135
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+EAK L +G+PC++ EAEAQCA L S D D + + R +
Sbjct: 136 REQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHL 195
Query: 179 WLGERGYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
E + +D IE K L + I L +LLG DY + ++G+G +A +++K
Sbjct: 196 TFSEARKM---PIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIK 252
Query: 234 SVG--DNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ-RE 290
G DN+V + I + + K + E W + ++ +N E+ N ++ +L+ +E
Sbjct: 253 EHGSLDNIV-EWIKNN------KTKYTLPENWPYD-EARQLFMNPEVT-NASEINLKWKE 303
Query: 291 TPFSQVIDAYSNPKCYSAD 309
+I+ K +S D
Sbjct: 304 PDVDGLIEFMVKQKGFSED 322
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 191 (72.3 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 71/266 (26%), Positives = 122/266 (45%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLS--TYR--RRLNSGSEVTQDDKNLDKMSS 109
L G+F+R +I +V DG P +K T R RR+ + ++ + L+KM
Sbjct: 65 LMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEKMKQ 124
Query: 110 LRR--NMGSEFSCMIKEA-KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
RR + E + +EA K LGL +G+P + EAEAQCA L + S D D
Sbjct: 125 ERRLVKVSKEHN---EEAQKLLGL-MGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDT 180
Query: 167 FLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
+ + R + E +E+D + R L + L ++LG DY + +RG+G
Sbjct: 181 LCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVG 240
Query: 225 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 284
P +A +++K+ G + G S K E W +K + L+ E+ ++G +
Sbjct: 241 PVTALKLIKTHGSIEKIVEFIESGES--NNTKWKIPEDWPYK-QARMLFLDPEV-IDGNE 296
Query: 285 HSLQRETPFS-QVIDAYSNPKCYSAD 309
+L+ P ++I+ + K +S +
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEE 322
>WB|WBGene00020442 [details] [associations]
symbol:gen-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0008821 "crossover junction
endodeoxyribonuclease activity" evidence=IDA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IMP] [GO:0072422 "signal
transduction involved in DNA damage checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0005737
GO:GO:0008630 GO:GO:0003677 GO:GO:0000003 GO:GO:0000724
GO:GO:0008821 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091542 EMBL:FO080619 PIR:T34350
RefSeq:NP_498361.1 ProteinModelPortal:Q22418 STRING:Q22418
EnsemblMetazoa:T12A2.8.1 EnsemblMetazoa:T12A2.8.2 GeneID:175885
KEGG:cel:CELE_T12A2.8 UCSC:T12A2.8.1 CTD:175885 WormBase:T12A2.8
HOGENOM:HOG000021109 InParanoid:Q22418 OMA:HIWLYES NextBio:890148
GO:GO:0072422 Uniprot:Q22418
Length = 434
Score = 188 (71.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 71/266 (26%), Positives = 116/266 (43%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
M + +W+ + +P +++K + ID W+ + +++ QT +L F R
Sbjct: 1 MTINGIWEWANHVVRKVPNETMRDKTLSIDGHIWLYESLKGCEAHHQQTPNSYLVTFFTR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG-SEFS 119
++ L+ L I V D +N+ S + + + RR+ G S F+
Sbjct: 61 IQRLLELKIIPIVVFDN-------------INASSSAHESKDQNEFVPRKRRSFGDSPFT 107
Query: 120 CMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
++ + AL LG+ + + EAQCA L + GC ++D D FLFG + +YR
Sbjct: 108 NLVDHVYKTNALLTELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDYFLFGGKNLYR 167
Query: 177 DIWLGERGYVVCYEMDDIERKLG--F-----GRNSLITLALLLGSDYSQ-GVRGLGPESA 228
+ C D + LG F R LI+ A+LLG DY Q GV+ +G S
Sbjct: 168 FDFTAGTSSTACLH-DIMHLSLGRMFMEKKVSRPHLISTAILLGCDYFQRGVQNIGIVSV 226
Query: 229 CQIVKSVGDN--------VVLQRIAS 246
I+ GD+ V+L R AS
Sbjct: 227 FDILGEFGDDGNEEIDPHVILDRFAS 252
Score = 43 (20.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 531 PVQCRNVSRIREMSDQPINTIELSDSE 557
P + R+V +IR P + IEL DS+
Sbjct: 409 PDRKRSV-KIRAFKPYPTDVIELGDSD 434
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 187 (70.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 82/339 (24%), Positives = 153/339 (45%)
Query: 25 KRVCIDLSC----WIVQLQNVNKSYRPQTDKL--FLRGLFHRLRALIALNCGLIFVSDGS 78
++V ID S +++ +++ + T + L G+F+R ++ ++V DG+
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGA 88
Query: 79 IPAIK---LSTYRRRLNSGSEVTQDDK------NLDKMSSLRRNMGSEFSCMIKEAKALG 129
P +K L+ R + +E ++ K +++K S + E + K K L
Sbjct: 89 PPKLKSGELAKRSARKHEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECK--KLLK 146
Query: 130 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCY 189
L +G+P ++ EAEAQCA+L S D D F A + R + E+
Sbjct: 147 L-MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQ 205
Query: 190 EMDDIERKL-GFG--RNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 246
E+ + R L G G RN I L +LLG DY + + +GP +A ++++ D+ L+++
Sbjct: 206 EIH-LNRALEGLGMDRNQFIDLCILLGCDYLEPIPKVGPNTALKLIR---DHGTLEKVV- 260
Query: 247 EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI-NVNGTDHSLQRETP-FSQVIDAYSNPK 304
E + + K E W ++ + +E LN ++ + N + + E P ++D K
Sbjct: 261 ESIEKDPKQKYVIPESWPYQ-DARELFLNPDVRDANDPECDFKWEAPDIEGLVDFLVKDK 319
Query: 305 CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTD 343
++ D Q + A+ ++ FF+ P KTD
Sbjct: 320 GFNEDRVRNGAARLQKNLKTAQQSRL-EGFFK-PVAKTD 356
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 185 (70.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 69/280 (24%), Positives = 117/280 (41%)
Query: 4 KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGL 57
K + D+ + + H ++V ID S + Q +S Q + L G+
Sbjct: 8 KLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGM 67
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMS 108
F+R L+ ++V DG P +K +R E + DD ++K +
Sbjct: 68 FYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAGIEKFN 127
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ E + KEAK L +GVP ++ EAEAQCA L + D D
Sbjct: 128 RRLVRVTKEHA---KEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALT 184
Query: 169 FGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
FG+ + R + E + E D + L I L +LLG DY + ++G+GP+
Sbjct: 185 FGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPK 244
Query: 227 SACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
A +++ + D ++ I L + +K + E W++K
Sbjct: 245 RAIELINTYRD---IETI----LDNLDSSKYTVPENWNYK 277
>UNIPROTKB|E9PLG0 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853 SMART:SM00485
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 IPI:IPI00982888
ProteinModelPortal:E9PLG0 SMR:E9PLG0 Ensembl:ENST00000524465
ArrayExpress:E9PLG0 Bgee:E9PLG0 Uniprot:E9PLG0
Length = 126
Score = 161 (61.7 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS 93
+ L ++ L+FV +G P +K +R S
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKRNQS 92
>UNIPROTKB|E9PM30 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853 SMART:SM00485
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 IPI:IPI00978436
ProteinModelPortal:E9PM30 SMR:E9PM30 Ensembl:ENST00000532257
ArrayExpress:E9PM30 Bgee:E9PM30 Uniprot:E9PM30
Length = 93
Score = 161 (61.7 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS 93
+ L ++ L+FV +G P +K +R S
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKRNQS 92
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 181 (68.8 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 67/263 (25%), Positives = 115/263 (43%)
Query: 4 KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQ-TDKL-----FLRG 56
K L D SC K +++ +D S I Q L V ++ T++ L+G
Sbjct: 8 KLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQG 67
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---------DKNLDKM 107
+F+R L+ ++V DG P +K +R + ++ T D ++++K
Sbjct: 68 MFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGNKEDIEKY 127
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S + + + + K L +GVP +E EAEAQCA L G S D D
Sbjct: 128 SKRTVKVTKQHN---DDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSL 184
Query: 168 LFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
FGA R + + V+ +E+ I +L + I L +L G DY +RG+G
Sbjct: 185 TFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGG 244
Query: 226 ESACQIVKSVGD-NVVLQRIASE 247
++A ++++ G +L+ + E
Sbjct: 245 QTALKLIRQHGSIETILENLNKE 267
>CGD|CAL0001028 [details] [associations]
symbol:orf19.652 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 CGD:CAL0001028 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15339 EMBL:AACQ01000173
RefSeq:XP_711995.1 ProteinModelPortal:Q59QM2 GeneID:3646389
KEGG:cal:CaO19.652 Uniprot:Q59QM2
Length = 684
Score = 148 (57.2 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 55/188 (29%), Positives = 94/188 (50%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ LWD+L+ S K + L L ++ RV ID +I Q + + + D
Sbjct: 1 MGIPELWDLLKPSFGKRISLDELVDQSIKERQRPPRVAIDAYSFIFQADH-SSIIVEEKD 59
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
+ ++ + ++ AL+ LN +I V DG + +KL + + N G + +D+ L +++ L
Sbjct: 60 GVLMQNVMAKILALVGLNISVIVVFDGILKPLKLKS---KENEGL-IYEDE--LQRLA-L 112
Query: 111 RRNMGSEFSCMIKEAKALGLSLG-VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
N SE++ + + K + LS + ++ E EAQCA L + D S D D +F
Sbjct: 113 ISNY-SEYNPFVVQLK-IELSNNKIEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVF 170
Query: 170 GARTVYRD 177
GAR V R+
Sbjct: 171 GARRVLRN 178
Score = 81 (33.6 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 177 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
DI YV +MD +E++ G + L+ LA L G DYS G + +G +A + S
Sbjct: 195 DITARSSYYVTPVDMDKVEQETGLTTSRLVFLASLRGGDYSVGAKKMGIVNAKNLALS 252
Score = 45 (20.9 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 266 KCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPK 304
K NNKE ++ + D ++ + PF +D++++ K
Sbjct: 597 KQNNKENAMKSIPELKPNDKAIIEDNPF---LDSFNSTK 632
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 173 (66.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 50/189 (26%), Positives = 94/189 (49%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS---L 110
L+G+F+R LI+ I+V DGS P +K +R E ++ K ++ + +
Sbjct: 65 LQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGTNEEV 124
Query: 111 RRNMGSEFSCMIKE----AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
++ + K+ K L L +GVP ++ EAEAQCA + + S D D
Sbjct: 125 QKFAKRVITVTRKQNEDCIKLLTL-MGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMDS 183
Query: 167 FLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
G+ + R ++ E + ++ +E+ + LG ++ I L++LLG DY ++G+G
Sbjct: 184 LTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDYCDSIKGIG 243
Query: 225 PESACQIVK 233
P+ A ++++
Sbjct: 244 PKRAIELIQ 252
Score = 45 (20.9 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 270 KEESLNQEI-NVNGTDHSLQRETPFSQVIDAYSNPKCYSAD 309
K +SL + I +++ + + L P+ +V + + NP AD
Sbjct: 253 KHKSLEEVIKHLDKSKYPLPEFFPYPEVRELFKNPNVIPAD 293
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 175 (66.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 49/191 (25%), Positives = 87/191 (45%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R ++ ++V DG P +K +R SE + ++ N+
Sbjct: 64 LMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANI 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K S + + + E K L + +G+P +E EAEA CA L + D
Sbjct: 124 EKFSKRLVKVTQQHT---DECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + E ++ + + LG + L +LLG DY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKRAVELIK 251
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 171 (65.3 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 65/267 (24%), Positives = 114/267 (42%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R ++ FV DG P +K +R+ + +D + ++ +
Sbjct: 65 LMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGTAE-- 122
Query: 114 MGSEFSCM-IK-------EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
M F+ +K EAK L +G+P + EAEAQCA L S D D
Sbjct: 123 MVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMD 182
Query: 166 IFLFGARTVYRDIWLGERGY--VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 223
F A + R + E+ + Y ++ L + L +LLG DY + +RG+
Sbjct: 183 TLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIRGV 242
Query: 224 GPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 283
GP A ++++ G L R E R+K E W ++ + + L+ E+ + G
Sbjct: 243 GPARAVELIRQYG---TLDRFVKEA----DRSKYPIPEDWPYE-DARRLFLDAEV-LPGE 293
Query: 284 DHSLQRETPFSQ-VIDAYSNPKCYSAD 309
+ L+ ++P + +I K ++ D
Sbjct: 294 EIELKWKSPDADGIIQFLVKEKGFNED 320
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 61/210 (29%), Positives = 88/210 (41%)
Query: 25 KRVCIDLSCWIVQLQNVNKSYRPQTDKLF-LRGLFHRLRALIALNCGLIFVSDGSIPAIK 83
K + +D S + Q +S P KL L GLF+R A + + +FV DG P K
Sbjct: 29 KIIALDTSIVVNQF----RSALPGHLKLSPLAGLFYRTLAFLEHDIKPVFVLDGKPPHQK 84
Query: 84 LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 143
+ +R S SS N GS F+ +E L +GVPC++ EA
Sbjct: 85 RAVLEKRAQSTGW----------SSSQSPNTGSAFN---QECLRLLHLMGVPCIKAPGEA 131
Query: 144 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN 203
EA CA L + S D D FG + R + + Y + + L
Sbjct: 132 EALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRDSEITEYSLPKLLEALQLKYE 191
Query: 204 SLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ L +LLG DY + GLGP A +++K
Sbjct: 192 EFVDLCILLGCDYCDKIGGLGPSRALKLIK 221
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 71/286 (24%), Positives = 119/286 (41%)
Query: 25 KRVCIDLSCWIVQLQ-------NVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDG 77
+++ ID S I Q NV ++ +T L G+F+R ++ ++V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTS-HLMGMFYRTIRMLESGIKPVYVFDG 87
Query: 78 SIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEAKAL 128
P +K +R+ +E + + +N+DK S + + + +E K L
Sbjct: 88 KPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFSKRLVKVTKQHN---EECKKL 144
Query: 129 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 188
+GVP +E EAEA CA L + D D FG + R + E +
Sbjct: 145 LSLMGVPYIEAPCEAEASCAALVKAGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPI 204
Query: 189 YEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 246
E I + + I L +LLG DY ++G+GP+ A ++K G ++ I
Sbjct: 205 QEFHFSRILQDMELTHQQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGS---IEEI-- 259
Query: 247 EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 292
L + K+ E W +K + L E+ V+GT L+ P
Sbjct: 260 --LENIDPNKHPAPEDWLYK-EARGLFLEPEV-VDGTSVDLKWNEP 301
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 172 (65.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 91/374 (24%), Positives = 155/374 (41%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG+ L + L L ++ V +D CW+ + K R + ++++
Sbjct: 1 MGITGLIPFVGKASSQLHLKDIRGSTVAVDTYCWLHKGVFGCAEKLARGEDTDVYIQYCL 60
Query: 59 HRLRALIALNCGLIFVSDGS-IPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSE 117
+ L++ + I V DG +PA K T +RR +S + + L ++ +
Sbjct: 61 KYVNMLLSYDIKPILVFDGQHLPA-KALTEKRRRDSRKQSKERAAELLRLGRIEEARSHM 119
Query: 118 FSCM-IKEAKALGL-----SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
C+ + AL L S V C+ EA+AQ A LN + + DSD+ LFGA
Sbjct: 120 RRCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGA 179
Query: 172 RTVYRDIWLGERGYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
+ + + L G +V E M E K F + + +L G DY + G+G
Sbjct: 180 KNIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDK--FRRMCILSGCDYLDSLPGIGLA 237
Query: 227 SACQ-IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINV-NGTD 284
AC+ I+K+ +++ RIA + + +N + + + K E+ + + + N +
Sbjct: 238 KACKFILKTEQEDM---RIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLE 294
Query: 285 HSLQRETPFS--QVIDAY-SNPKCYSADSE-AVHRVLAQ-HLFQHARLHQVCAQFFQWPP 339
+QR + + Y SN DSE A+H L + F RL W P
Sbjct: 295 RRMQRLCALEDYETDERYCSNAGTLLEDSEQALHLALGNLNPFSMKRLDS-------WTP 347
Query: 340 EKTDEYILPKIAER 353
EK + PK +R
Sbjct: 348 EKA--WPTPKNVKR 359
Score = 47 (21.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 530 SPVQCRNVSRIREMSDQPINTIELSDSETEKSPELER 566
SPV C N S +R +S + + ++ ++ +K L+R
Sbjct: 470 SPVVCENASLLRLLSPKKASPLD-GEAGVKKVDSLKR 505
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 167 (63.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R ++ ++V DG P +K +R +E +K L + +
Sbjct: 64 LMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEA---EKQLQQAQAAGAE 120
Query: 114 MGSE-FSC-MIK-------EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
E F+ ++K E K L +G+P L+ EAEA CA L + D
Sbjct: 121 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + E + I ++LG + + L +LLGSDY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++
Sbjct: 241 IGPKRAVDLIQ 251
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 166 (63.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R ++ ++V DG P +K +R +E +K L + +
Sbjct: 64 LMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEA---EKQLQEAQAAGAE 120
Query: 114 MGSE-FSC-MIK-------EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
E F+ ++K E K L +G+P L+ EAEA CA L + D
Sbjct: 121 AEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + E + I ++LG + + L +LLGSDY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++
Sbjct: 241 IGPKRAVDLIQ 251
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 166 (63.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 51/191 (26%), Positives = 88/191 (46%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R ++ ++V DG P +K +R +E +K L + +
Sbjct: 64 LMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEA---EKQLQQAQAAGAE 120
Query: 114 MGSE-FSC-MIK-------EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
E F+ ++K E K L +G+P L+ EAEA CA L + D
Sbjct: 121 EEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + E ++ I ++LG + + L +LLGSDY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++
Sbjct: 241 IGPKRAVDLIQ 251
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 166 (63.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 46/188 (24%), Positives = 83/188 (44%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNLDKM 107
L G+F+R ++ +++ DG P +K +R +E Q+ +++
Sbjct: 64 LMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGAEEEV 123
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ + E K L +G+P L+ EAEA CA L + D D
Sbjct: 124 EKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCL 183
Query: 168 LFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
FG+ + R + E + E + + ++LG + + L +LLGSDY + VRG+GP
Sbjct: 184 TFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVRGIGP 243
Query: 226 ESACQIVK 233
+ A +++
Sbjct: 244 KRAVDLIQ 251
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 165 (63.1 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R ++ ++V DG P +K +R +E +K L + +
Sbjct: 64 LMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEA---EKQLQQAQAAGAG 120
Query: 114 MGSE-FSC-MIK-------EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
E F+ ++K E K L +GVP L+ EAEA CA L + D
Sbjct: 121 EEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + E + + ++LG + + L +LLGSDY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++
Sbjct: 241 IGPKRAVDLIQ 251
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 161 (61.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/246 (23%), Positives = 105/246 (42%)
Query: 4 KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDKLFLRGLF 58
K + D+ S + + ++V ID S I Q Q + + + L G+F
Sbjct: 8 KLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSLMGMF 67
Query: 59 HRLRALIALNCGL--IFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGS 116
+R I + G+ ++V DG P +K +R +E + + + + + +
Sbjct: 68 YRT---IRMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQE-AGMEEEVEK 123
Query: 117 EFSCMIK-------EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
++K E K L +G+P L+ EAEA CA L + D D F
Sbjct: 124 FTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTF 183
Query: 170 GARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
G+ + R + E + E + + ++LG + + L +LLGSDY + +RG+G +
Sbjct: 184 GSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGAKR 243
Query: 228 ACQIVK 233
A +++
Sbjct: 244 AVDLIQ 249
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 56/247 (22%), Positives = 106/247 (42%)
Query: 4 KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDKL-FLRGL 57
K + D+ + K + ++V +D S I Q Q+ N + + L G+
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGM 67
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEVTQDDKNLDKMS 108
F+R ++ ++V DG P +K +R L +E + +N++K +
Sbjct: 68 FYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFT 127
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ + + +E K L +G+P ++ EAEA CA L + D D
Sbjct: 128 KRLVKVTKQHN---EECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALT 184
Query: 169 FGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
FG + R + E + E ++ + + +G + L +LLGSDY + +RG+GP+
Sbjct: 185 FGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGPK 244
Query: 227 SACQIVK 233
A +++
Sbjct: 245 RAIDLIR 251
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 53/244 (21%), Positives = 102/244 (41%)
Query: 4 KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDKL-FLRGL 57
K + D+ + K + ++V +D S I Q Q+ N + + L G+
Sbjct: 8 KLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNMLQNEEGETTSHLMGM 67
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNLDKMSSLR 111
F+R ++ ++V DG P +K +R +E ++ ++ +
Sbjct: 68 FYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFN 127
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+ + +E K L +G+P ++ EAEA CA L + D D FG
Sbjct: 128 KRLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGT 187
Query: 172 RTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
+ R + E + E ++ + + +G + L +LLGSDY + +RG+GP+ A
Sbjct: 188 PVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIRGIGPKRAI 247
Query: 230 QIVK 233
+++
Sbjct: 248 DLIR 251
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 166 (63.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 60/260 (23%), Positives = 114/260 (43%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQ-TDKLFLRGL 57
MG+ L ++ + + + + + V +D CW+ + + K R + TDK ++
Sbjct: 1 MGIHGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLARGEPTDK-YVGFC 59
Query: 58 FHRLRALIALNCGLIFVSDG-SIPA---IKLSTYRRR---LNSGSEVTQDDKNLDKMSSL 110
+ L++ + + DG ++P+ ++ S RR L G ++ ++ K +
Sbjct: 60 MKFVNMLLSHGIKPVLIFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARECF 119
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
R++ + K KA S GV CL EA+AQ A LN + + DSD+ FG
Sbjct: 120 SRSINITHAMAHKVIKA-ARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFG 178
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESA 228
+ V + G + + R+LG F + +L G DY +RG+G A
Sbjct: 179 CKKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKA 238
Query: 229 CQIVKSVGDNVVLQRIASEG 248
C++++ + +++ I G
Sbjct: 239 CKVLRLANNPDIVKVIKKIG 258
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 166 (63.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 58/259 (22%), Positives = 113/259 (43%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG++ L ++ + + + + + V +D CW+ + + K + + ++
Sbjct: 1 MGIQGLLQFIKEASEPVNVKKYKGQAVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPA---IKLSTYRRR---LNSGSEVTQDDKNLDKMSSLR 111
+ L++ I V DG ++P+ ++ S RR L G ++ ++ K +
Sbjct: 61 KFVNMLLSYGVKPILVFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARECFT 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R++ + K KA +LGV CL EA+AQ A LN + + DSD+ FG
Sbjct: 121 RSVNITHAMAHKVIKA-ARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESAC 229
+ V + G V + ++LG F + +L G DY +RG+G AC
Sbjct: 180 KKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEEKFRYMCILSGCDYLASLRGIGLAKAC 239
Query: 230 QIVKSVGDNVVLQRIASEG 248
++++ + +++ I G
Sbjct: 240 KVLRLANNPDIVKVIKKIG 258
>UNIPROTKB|G4MVT4 [details] [associations]
symbol:MGG_01800 "Flap structure-specific endonuclease"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 EMBL:CM001232 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K15339 RefSeq:XP_003714807.1 ProteinModelPortal:G4MVT4
EnsemblFungi:MGG_01800T0 GeneID:2679379 KEGG:mgr:MGG_01800
Uniprot:G4MVT4
Length = 932
Score = 135 (52.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 40/118 (33%), Positives = 56/118 (47%)
Query: 125 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-- 182
AK + G E EAEA+CALL + D S D D +FG R+ W E
Sbjct: 108 AKRMIRLFGFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFGCTRTLRN-WSSEGV 166
Query: 183 RG-----YVVCYEMDDIERK-LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 233
RG +V Y+ I+ + G R ++ +AL+ G DY QGV G G + AC+ +
Sbjct: 167 RGSKEPTHVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVACEAAR 224
Score = 80 (33.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 42/138 (30%), Positives = 61/138 (44%)
Query: 1 MGVKNLW-DI-----LESCKKTLPLHHLQNKR----VCIDLSCWIVQLQNVNKSYRPQTD 50
MG+K ++ +I + CK L + L+ KR + ID+S W Q+Q T
Sbjct: 1 MGIKGIYPEIGPGERISLCK--LAVQTLEEKRRPLRIAIDISIWQFQIQAARGGANAPT- 57
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
R LF+RL L+ + IFV DG + PA K + RR G T D +
Sbjct: 58 ----RTLFYRLARLLGHSIQPIFVFDGPNKPAFKRN--RRSTTRGG-ATGDVVSNAMAKR 110
Query: 110 LRRNMGSEFSCMIKEAKA 127
+ R G +F EA+A
Sbjct: 111 MIRLFGFQFHEAPGEAEA 128
>UNIPROTKB|I3LHP7 [details] [associations]
symbol:I3LHP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:CU469267
Ensembl:ENSSSCT00000025898 Uniprot:I3LHP7
Length = 159
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 34/103 (33%), Positives = 49/103 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVNPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
RL L+ IFV DG P +K T +R T D K
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDLATDDSK 103
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 161 (61.7 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 58/264 (21%), Positives = 111/264 (42%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG++ L L+ + + + + K V +D CW+ + K + + +++
Sbjct: 1 MGIQGLLQFLKEASEPVHVKKYKGKTVAVDTYCWLHKGAFACAEKLAKGEPTDQYVQFCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPAIK-LSTYRRR-----LNSGSEVTQDDKNLDKMSSLR 111
+ L++ I V DG ++P+ K + RR L G ++ ++ K +
Sbjct: 61 KLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQTNLQKGKQLLREGKLAEARECFS 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R++ S M E S GV + EA++Q A LN + + DSD+ FG
Sbjct: 121 RSVNIT-SSMAHEVIKAARSEGVDYIVAPYEADSQLAYLNKNDFAEAIITEDSDLLAFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESAC 229
+ V + G + + R LG F + +L G DY + G+G AC
Sbjct: 180 KKVLLKMDKFGNGLEIDQARFGMCRSLGDVFTEEKFRYMCILSGCDYLPSIHGIGLAKAC 239
Query: 230 QIVKSVGDNVVLQRIASEGLSFVK 253
+++K V +N + ++ + ++K
Sbjct: 240 KLLK-VANNPDITKVIQKIGQYLK 262
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 161 (61.7 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 63/285 (22%), Positives = 125/285 (43%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG++ L ++ + + + + + V +D CW+ + K + + ++
Sbjct: 1 MGIQGLLQFIKDASEPMHVKKYRGQTVAVDTYCWLHKGAFSCAEKLAKGEPTDQYVSYCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPA---IKLSTYRRR---LNSGSEVTQDDKNLDKMSSLR 111
+ L++ I V DG ++P+ ++ S RR L G ++ ++ K +
Sbjct: 61 KFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQANLQKGKQLLREGKITEARECFT 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R++ S M + + GV C+ EA+AQ A LN + + DSD+ FG
Sbjct: 121 RSVNITPS-MAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIER--KLG--FGRNSLITLALLLGSDYSQGVRGLGPES 227
+ V + + ++G + E + R LG F + +L G DY Q + G+G
Sbjct: 180 KKVI--LKMDKQGNGLEIEQCHLGRCKSLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGK 237
Query: 228 ACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKE---GWSFKCNN 269
AC++++ + +L+ I G ++K + +E G++ K NN
Sbjct: 238 ACKLLRMANNPDILKVIKKMG-QYLKMDISVPEEYIEGFT-KANN 280
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 154 (59.3 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 73/338 (21%), Positives = 140/338 (41%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQ---NKRVCIDLS-C---WIVQLQNVNKSYRPQTDKL 52
MG+K L ++ ++ + ++ ++ + V ID S C +++ ++ + + +
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G+ +R + ++V DG P +K +R +E ++ ++
Sbjct: 61 TSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDV 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKAL-GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ R + EAK L GL +G+P +E EAEAQCA L G + D
Sbjct: 121 KEAEKFERRLVKVTKQQNDEAKRLLGL-MGIPVVEAPCEAEAQCAHLVKAGKVFGTVTED 179
Query: 164 SDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D FG+ + R + ++ + + + ++ I L +LLG DY +R
Sbjct: 180 MDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIR 239
Query: 222 GLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN 281
G+GP+ A ++++ N+ + I L + + K E W +K +E LN E+
Sbjct: 240 GVGPKKAVELIRQ-HKNI--ETI----LENIDQNKYPPPEDWPYK-RARELFLNPEVTKP 291
Query: 282 GTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQ 319
+E VI K ++ E + LA+
Sbjct: 292 EEVELTWKEADVEGVIQFLCGEKNFN--EERIRNALAK 327
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 164 (62.8 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 58/259 (22%), Positives = 112/259 (43%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG++ L ++ + + + + + V +D CW+ + + K + + ++
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPA---IKLSTYRRR---LNSGSEVTQDDKNLDKMSSLR 111
+ L++ I V DG ++P+ ++ S RR L G ++ ++ K +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R++ + K KA S GV CL EA+AQ A LN + + DSD+ FG
Sbjct: 121 RSINITHAMAHKVIKA-ARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESAC 229
+ V + G + + R+LG F + +L G DY +RG+G AC
Sbjct: 180 KKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 230 QIVKSVGDNVVLQRIASEG 248
++++ + +++ I G
Sbjct: 240 KVLRLANNPDIVKVIKKIG 258
Score = 44 (20.5 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 528 SPSPVQCRNVSRIREMSDQPINTIE--LSDSETEKSPE 563
+PSP + + R SD P + E +SD KS E
Sbjct: 621 TPSPSPSTALQQFRRKSDSPTSLPENNMSDVSQLKSEE 658
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 244 IASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 292
++ LSF K+ K + EG K + E ++ VNG + TP
Sbjct: 431 LSQYSLSFTKKTKKNSSEG--NKSLSFSEVFVPDL-VNGPTNKKSVSTP 476
>ASPGD|ASPL0000035217 [details] [associations]
symbol:AN3186 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00485
GO:GO:0003677 GO:GO:0006281 EMBL:BN001306 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000052 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K15339 RefSeq:XP_660790.1
ProteinModelPortal:Q5B8E4 EnsemblFungi:CADANIAT00009883
GeneID:2874333 KEGG:ani:AN3186.2 HOGENOM:HOG000198967
OrthoDB:EOG4QZBVF Uniprot:Q5B8E4
Length = 822
Score = 127 (49.8 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 56/226 (24%), Positives = 92/226 (40%)
Query: 142 EAEAQCALLNLESLCDGCFSSDSDIFLFGAR-TVY---RDIWLGERG--YVVCYEMDD-I 194
EAEA+C+ L + + D S+D D +FG+ TV ++ G G +V Y M D
Sbjct: 123 EAEAECSRLQMAGVVDAVMSNDVDALMFGSGFTVMNFSKEAGSGAGGATHVTSYRMGDGA 182
Query: 195 ERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK 253
+ + R +I A+L G DY GV G + A +I + +L+ + ++G
Sbjct: 183 DSNVKLDRPGMILFAMLSGGDYLPSGVPKCGSKLAAEIATAGFGKDLLEALEADGAELET 242
Query: 254 RAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR--ET-PFSQVIDAYSNPKCYSADS 310
R N +E ++ E Q T H R ET P ++ Y+ P S
Sbjct: 243 RL-NEWRERLQYELEENESGYFQ------TKHKAVRIPETFPDRTILSYYAKPVVSSEQQ 295
Query: 311 EAVHRVLAQHLFQH----ARLHQVCAQFFQWPPEKTDEYILPKIAE 352
R ++ + + L Q A F+W ++ +AE
Sbjct: 296 VESLRYRLRNAWDREVNVSELRQFTAYAFEWNYRSGARKVIRLLAE 341
Score = 79 (32.9 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 17 LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLI 72
L + HL+ R+ +D+S W+ Q+Q P+ LR LF RL ++AL +
Sbjct: 21 LAISHLERTSRPIRIAVDISIWLFQIQAGRGGKNPE-----LRTLFFRLLKILALPIHPL 75
Query: 73 FVSDG 77
FV DG
Sbjct: 76 FVYDG 80
Score = 44 (20.5 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 528 SPSPVQCRNVS-----RIREMSDQPINTIELSDSETEKSPELERKAR 569
S SPV+ R + R ++ + IE+SD+E E +P + + R
Sbjct: 590 SGSPVKRRPATTPPNARRAAITSGSVEVIEISDTEEEYTPPVAPRIR 636
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 166 (63.5 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 57/259 (22%), Positives = 113/259 (43%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG++ L ++ + + + + + V +D CW+ + + K + + ++
Sbjct: 1 MGIQGLLQFIQEASEPVNVKKYKGQAVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPA---IKLSTYRRR---LNSGSEVTQDDKNLDKMSSLR 111
+ L++ I + DG ++P+ ++ S RR L G ++ ++ K +
Sbjct: 61 KFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARDCFA 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R++ + K KA +LGV CL EA+AQ A LN + + DSD+ FG
Sbjct: 121 RSINITHAMAHKVIKA-ARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESAC 229
+ V + G V + ++LG F + +L G DY +RG+G AC
Sbjct: 180 KKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEEKFRYMCILSGCDYLASLRGIGLAKAC 239
Query: 230 QIVKSVGDNVVLQRIASEG 248
++++ + +++ I G
Sbjct: 240 KVLRLANNPDIVKVIKKIG 258
Score = 39 (18.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 528 SPSPVQCRNVSRIREMSDQPINTIELSDSETEK 560
+PSP + + R SD P E S T++
Sbjct: 612 TPSPSASTTLQQFRRKSDPPACLPEASAVVTDR 644
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 159 (61.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 63/248 (25%), Positives = 110/248 (44%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV---NKSYRPQTDKLFLRGL 57
MG+K L +L+ +K+ + K + +D W+ + ++ +TDK +L+
Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDK-YLKYA 59
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL-DKMSSLRRNMGS 116
H+ L + V DG K ST ++R E + K L D+ + M
Sbjct: 60 IHQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKKLWDEGKKSQAIM-- 117
Query: 117 EFSCMIKEAKALGLSLGVPCLE-GVE------EAEAQCALLNLESLCDGCFSSDSDIFLF 169
+FS + + L + E G+E EA+AQ L E++ DG + DSD+ +F
Sbjct: 118 QFSRCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDMLVF 177
Query: 170 GARTVYRDIWLGERGYVVCYEMDDI----ERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
GA+TV + G + +DI + L L +A+ G DY+ GV G+G
Sbjct: 178 GAQTVL--FKMDGFGNCITIRRNDIANAQDLNLRLPIEKLRHMAIFSGCDYTDGVAGMGL 235
Query: 226 ESACQIVK 233
++A + ++
Sbjct: 236 KTALRYLQ 243
Score = 41 (19.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 375 QKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADL-IESACPE 424
+ VP P TG+ K KLQ E+ E+ ++ P +SA P+
Sbjct: 441 ENVPFLPPRTGVSKYFKLQKNTEKEID-EQVPSQSNNTTPTSAKSDSASPQ 490
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 163 (62.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 59/258 (22%), Positives = 114/258 (44%)
Query: 4 KNLWDILESCKKTLPLHHLQNKRVCIDLSC----WIVQLQNVNKSYRPQTDKL-----FL 54
K + D + K + + L + + ID S +I+ +++ ++ Y T++ +
Sbjct: 8 KFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRD-SEQYGNLTNESGETTSHI 66
Query: 55 RGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLDKMSSLR 111
GL R L+ I+V DG+ P +K S +R E+ + K + ++
Sbjct: 67 SGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIK 126
Query: 112 RNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ G K EAK L +G+P +E EAE+QCA L +L + D+D +
Sbjct: 127 KQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALV 186
Query: 169 FGARTVYRDIWLG------------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSD 215
FG + + R++ +RGY++ ++ + + L + I +L G D
Sbjct: 187 FGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCD 246
Query: 216 YSQGVRGLGPESACQIVK 233
Y ++G+G ++A ++K
Sbjct: 247 YCDTIKGIGSKTAYNLIK 264
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 264 SFKCNN--KEESLNQEINVNGTDHSLQRETPFSQVIDAYSN 302
+ K N+ KE+S N N+ +H++ + + + SN
Sbjct: 592 TLKSNSPLKEDSPNSYNNIKNNNHTININSQINNHKEPISN 632
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 163 (62.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 59/258 (22%), Positives = 114/258 (44%)
Query: 4 KNLWDILESCKKTLPLHHLQNKRVCIDLSC----WIVQLQNVNKSYRPQTDKL-----FL 54
K + D + K + + L + + ID S +I+ +++ ++ Y T++ +
Sbjct: 8 KFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRD-SEQYGNLTNESGETTSHI 66
Query: 55 RGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLDKMSSLR 111
GL R L+ I+V DG+ P +K S +R E+ + K + ++
Sbjct: 67 SGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIK 126
Query: 112 RNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ G K EAK L +G+P +E EAE+QCA L +L + D+D +
Sbjct: 127 KQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALV 186
Query: 169 FGARTVYRDIWLG------------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSD 215
FG + + R++ +RGY++ ++ + + L + I +L G D
Sbjct: 187 FGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCD 246
Query: 216 YSQGVRGLGPESACQIVK 233
Y ++G+G ++A ++K
Sbjct: 247 YCDTIKGIGSKTAYNLIK 264
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 264 SFKCNN--KEESLNQEINVNGTDHSLQRETPFSQVIDAYSN 302
+ K N+ KE+S N N+ +H++ + + + SN
Sbjct: 592 TLKSNSPLKEDSPNSYNNIKNNNHTININSQINNHKEPISN 632
>WB|WBGene00009731 [details] [associations]
symbol:exo-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:Z93382
eggNOG:COG0258 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 PIR:T22235 RefSeq:NP_499770.1
ProteinModelPortal:O62245 SMR:O62245 IntAct:O62245 MINT:MINT-117279
STRING:O62245 PaxDb:O62245 EnsemblMetazoa:F45G2.3 GeneID:176765
KEGG:cel:CELE_F45G2.3 UCSC:F45G2.3 CTD:176765 WormBase:F45G2.3
HOGENOM:HOG000022038 InParanoid:O62245 OMA:IHMGEET NextBio:893914
Uniprot:O62245
Length = 639
Score = 151 (58.2 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 66/267 (24%), Positives = 123/267 (46%)
Query: 1 MGVKNLWDILES-CKKTLPLHHLQNKRVCIDLSCWIVQ-LQN-VNKSYRPQTDKLFLRGL 57
MG+ L +++ C+K L L+ K V ID+SC + + L ++K + + + ++ +
Sbjct: 1 MGISGLLPFVKNACRKGNILE-LRGKSVAIDVSCLLHRGLTGCMDKIHMGEETQSYVNYV 59
Query: 58 FHRLRALIALNCGLIFVSDGS-IPAIK-LSTYRRRLNSGSEVTQD---DKNLDKMSSLRR 112
++ L+ + C ++ V DG +PA K + RR L + + K L++ +
Sbjct: 60 NKYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLAKGLEREARDTY 119
Query: 113 NMGSEFSCMIKE--AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
+ + S I E + V + EA+AQ A L E L D + DSD+ +FG
Sbjct: 120 RLATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLIVFG 179
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIER----KLGFGRNSLIT---LALLLGSDYSQ-GVRG 222
+Y W G YE +++ +LG + + + +L G DY Q G+ G
Sbjct: 180 CEMIYFK-WQSATGECSVYEKCNLKNCFTGELGGDKFDFVKFRRICILSGCDYLQAGLPG 238
Query: 223 LGPESACQI--VKSVGD-NVVLQRIAS 246
+G +A + + S+ D +L+++ S
Sbjct: 239 VGLSTAAKFFSMTSIKDLRTLLRKVPS 265
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 144 (55.7 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 49/210 (23%), Positives = 89/210 (42%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDDKNL 104
L G+F+R ++ ++V DG+ P +K RR E T +++
Sbjct: 64 LMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETGTAEDV 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K S + E + +E + L +G+P + EAEAQCA+L S D
Sbjct: 124 EKFSRRTVRVTREHN---EECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D F + + R + E E+ D + L R + L +LLG DY +
Sbjct: 181 DTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLDPIPK 240
Query: 223 LGPESACQIVKSVGD-NVVLQRIASEGLSF 251
+GP +A ++++ G +++++ L +
Sbjct: 241 VGPSTALKLIREHGSLETIVEKMKKGELKY 270
Score = 44 (20.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 272 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD 309
E++ +++ +++ + PF D + NP + AD
Sbjct: 257 ETIVEKMKKGELKYTVPEDWPFEDARDLFFNPAVHPAD 294
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 158 (60.7 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 63/262 (24%), Positives = 116/262 (44%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQ-TDKLFLRGL 57
MG+ L ++ + + + + + V +D CW+ + + K + + TDK G
Sbjct: 1 MGIHGLLQFIKEASEPIHIRKYKGQVVAVDTYCWLHKGAVACAEKLAKGEPTDKYV--GF 58
Query: 58 FHRLRALIALNCGL--IFVSDG-SIPA---IKLSTYRRR---LNSGSEVTQDDKNLDKMS 108
+L ++ L+ G+ I V DG ++P+ ++ S RR L G ++ ++ K +
Sbjct: 59 CMKLVNML-LSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARE 117
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
R++ + KA S GV CL EA+AQ A LN + + DSD+
Sbjct: 118 CFIRSINITHTMAHNVIKA-ARSQGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLA 176
Query: 169 FGARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPE 226
FG + V + G V + ++LG F + +L G DY +RG+G
Sbjct: 177 FGCKKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLA 236
Query: 227 SACQIVKSVGDNVVLQRIASEG 248
AC++++ + +L+ + G
Sbjct: 237 KACKLLRLANNPDILKVVRKIG 258
Score = 37 (18.1 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 541 REMSDQPINTIELSDSETEKS-PE-LERK 567
++ S QP+ ++D ET+ P+ LE K
Sbjct: 519 KKASSQPLAETAVTDKETDAGEPDCLEDK 547
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 147 (56.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 55/259 (21%), Positives = 106/259 (40%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQN--VNKSYRPQTDKLFLRGLF 58
MG++ L ++ + + + + V +D CW+ + K R + ++
Sbjct: 1 MGIQGLLQFIKEAAEPAHVKKYRGQAVAVDAYCWLHKGSYGCAEKLARGEPTDHYVVFCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPAIKLSTYRRR------LNSGSEVTQDDKNLDKMSSLR 111
+ L++ + V DG ++P+ K RR L G ++ ++ K +
Sbjct: 61 KLVDMLLSFGIKPVLVFDGCTLPSKKEVEKARREKRQANLLKGKQLFREGKLSEARDCFA 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R++ + M E + GV C+ EA+AQ A LN + + DSD+ FG
Sbjct: 121 RSVNVTHA-MAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGVVQAIITEDSDLLAFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESAC 229
+ V+ I G + ++LG F + +L G DY + G+G AC
Sbjct: 180 KKVFLKIDKFGNGLEIDQARLGNCKQLGNIFTEEKFRYMCILSGCDYLSSIHGIGLAKAC 239
Query: 230 QIVKSVGDNVVLQRIASEG 248
+++K + +++ I G
Sbjct: 240 KLLKLANNPDIIKVIKKMG 258
>RGD|1586176 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent repair
deficiency, complementation group 5" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008340 "determination of
adult lifespan" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0009650 "UV protection" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 RGD:1586176
GO:GO:0005634 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
GO:GO:0006289 PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
IPI:IPI00357888 Ensembl:ENSRNOT00000014836 UCSC:RGD:1586176
ArrayExpress:D4A7R1 Uniprot:D4A7R1
Length = 242
Score = 135 (52.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 35/109 (32%), Positives = 52/109 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRPVSPEALEGKVLAVDISIWLNQALKGVRDRHGNAIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKM 107
RL L+ IFV DG P +K T +RR S K +K+
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQKKDSASIDSRKTTEKL 109
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 151 (58.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 59/260 (22%), Positives = 113/260 (43%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQ-TDKLFLRGL 57
MG++ L ++ + + + + + V +D CW+ + + K + + TDK ++
Sbjct: 1 MGIQGLLQFIKEASEPVHVRKYKGQVVAVDTYCWLHKGAVACAEKLAKGEPTDK-YVGFC 59
Query: 58 FHRLRALIALNCGLIFVSDG-SIPA---IKLSTYRRR---LNSGSEVTQDDKNLDKMSSL 110
+ L++ I V DG ++P+ ++ S RR L G ++ ++ K +
Sbjct: 60 MKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREGKVSEARECF 119
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
R++ + KA + GV CL EA+AQ A LN + + DSD+ FG
Sbjct: 120 TRSINITHAMAHSVIKA-ARAQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFG 178
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESA 228
+ V + G V ++LG F + +L G DY +RG+G A
Sbjct: 179 CKKVILKMDQFGNGLEVDQARLGKCKQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKA 238
Query: 229 CQIVKSVGDNVVLQRIASEG 248
C++++ + +++ I G
Sbjct: 239 CKVLRLANNPDIVKVIKKIG 258
Score = 40 (19.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 244 IASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 292
+A SF K+ K + EG + N+ E + ++ T SL TP
Sbjct: 431 LAQYSTSFTKKTKKNSCEG-NKSLNSSELFMPDPVDEAATKKSLS--TP 476
>UNIPROTKB|Q9HD60 [details] [associations]
symbol:ERCC5 "DNA repair protein-complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR019974
Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 EMBL:AL157769 PANTHER:PTHR11081
EMBL:AF255431 EMBL:AF255433 EMBL:AF255434 EMBL:AF255435
EMBL:AF255436 UniGene:Hs.258429 HGNC:HGNC:3437
PANTHER:PTHR11081:SF1 IPI:IPI01010865 SMR:Q9HD60 STRING:Q9HD60
Ensembl:ENST00000535557 HOVERGEN:HBG054810 Uniprot:Q9HD60
Length = 232
Score = 130 (50.8 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 34/109 (31%), Positives = 52/109 (47%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD-KNLDKM 107
RL L+ IFV DG P +K T +R + D K +K+
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKL 109
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 117 (46.2 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 58/251 (23%), Positives = 107/251 (42%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG++ L +L+S + + L+ V +D W+ + L + + K ++
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEF 118
HR+ L I V DG +KL +R S E + L+ ++ N + +
Sbjct: 61 HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLA--RALEHEAN--GNSSAAY 116
Query: 119 SCMIKEAKALGLSLG---VPCL--EGVE------EAEAQCALLNLESLCDGCFSSDSDIF 167
C K A + S+ + L E V+ EA+AQ A L + D + DSD+
Sbjct: 117 ECYSK-AVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLI 175
Query: 168 LFGA-RTVYRDIWLGERGYVVCYEMDDIERKL-----GFGRNSLITLALLLGSDYSQGVR 221
FG R +++ + + G+ V ++ + + GF L+ + +L G DY Q +
Sbjct: 176 PFGCLRIIFK---MDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLP 232
Query: 222 GLGPESACQIV 232
G+G + A ++
Sbjct: 233 GMGLKRAHALI 243
Score = 64 (27.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 309 DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLAL 368
DS+ V + Q + + L Q+ F Q P + E + PK+A D+ R + + T+
Sbjct: 304 DSDFVGPSMPQDIAKGIALGQL-DPFTQLPFQA--ESVTPKLAVDDISRPKSFKPETVKK 360
Query: 369 GVDLPLQK 376
+DLP+QK
Sbjct: 361 KLDLPVQK 368
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 133 (51.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 58/248 (23%), Positives = 108/248 (43%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MGV L IL + L + + + ID W+ + + + + + ++ +
Sbjct: 1 MGVNGLLQILREIQDPCSLERYRGQTLAIDTYGWLHRALVSCAEELCLGKPTRNYITAIL 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQ-DDKNL---DKMSSLRRN 113
++++ L FV DG S+P K T R R E + +K + ++ + ++
Sbjct: 61 NKIQMLNHFGITPYFVFDGASLPT-KQETNRERQLKRQEAKELAEKYIAANNRKLAYKQF 119
Query: 114 MGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
M + + S M K +L + + EA+ Q L + DG S DSD+ +FG
Sbjct: 120 MKAAYVTSQMAKSVMCELDNLSIKYIVAPYEADPQMVYLEKMGIVDGILSEDSDLLIFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERK-----LG-FGRNSLITLALLLGSDYSQGVRGLGP 225
+ + L + G V D ++ L + L +A+L G DY++GV G+G
Sbjct: 180 KKLITK--LKDDGTCVEINRDKFDKVKEIPYLNQYNMEQLRLVAMLSGCDYTKGVPGIGL 237
Query: 226 ESACQIVK 233
++A Q+V+
Sbjct: 238 KTAFQLVR 245
Score = 45 (20.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 542 EMSDQPINTI----ELSDSET---EKSPELERKARALRM 573
E SD+P++T EL+D++ E+ P+ E + A+++
Sbjct: 519 ESSDKPVDTQNILDELTDNDNDHEEEEPQQETDSNAIKI 557
Score = 42 (19.8 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 531 PVQCRNVSRIREMSDQPINTIELS 554
P+Q +N++RI + S P +I+L+
Sbjct: 635 PLQPKNINRIEQKS--PTKSIKLN 656
>SGD|S000000843 [details] [associations]
symbol:YEN1 "Holliday junction resolvase" species:4932
"Saccharomyces cerevisiae" [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA;IGI]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA;IGI]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=IMP;IDA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 SGD:S000000843 EMBL:U18796
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
EMBL:BK006939 GO:GO:0008821 GO:GO:0000014 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:U13615 PIR:S50544
RefSeq:NP_010959.2 ProteinModelPortal:P40028 DIP:DIP-6450N
IntAct:P40028 MINT:MINT-680602 STRING:P40028 EnsemblFungi:YER041W
GeneID:856764 KEGG:sce:YER041W CYGD:YER041w HOGENOM:HOG000142381
KO:K15339 OMA:WLFECGF OrthoDB:EOG4MWCG5 NextBio:982941
Genevestigator:P40028 GermOnline:YER041W Uniprot:P40028
Length = 759
Score = 90 (36.7 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 182 ERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
+ +V ++ I + G F R SL+ ++LLG+DY++GV+GLG + Q+ + N
Sbjct: 253 KESFVTVIDLPKINKVAGKKFDRLSLLFFSVLLGADYNRGVKGLGKNKSLQLAQCEDPNF 312
Query: 240 VLQ 242
++
Sbjct: 313 SME 315
Score = 89 (36.4 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 38/153 (24%), Positives = 67/153 (43%)
Query: 42 NKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD 101
++SY T K + RL+ L++LN + V DG + +++R+ N T D
Sbjct: 86 SRSYTT-TGKAVIN-FISRLKELLSLNVEFLLVFDG----VMKPSFKRKFNHEQNATTCD 139
Query: 102 KNLDKMSSLRRNM------GS----------EFSCMIKEAKAL-GLSLGVPCLEGVEEAE 144
+ SS +++ G+ EF ++++ L +S + C EG E
Sbjct: 140 DEKEYYSSWEQHVKNHEVYGNCKGLLAPSDPEFISLVRKLLDLMNISYVIACGEG----E 195
Query: 145 AQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
AQC L + D S+DSD +FG + ++
Sbjct: 196 AQCVWLQVSGAVDFILSNDSDTLVFGGEKILKN 228
Score = 43 (20.2 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 1 MGVKNLWDILESCKKT--LPLHHLQ---NK------RVCIDLSCWIVQ---LQNVNKSYR 46
MGV +W+ L+ + +PL NK R+ ID W+ + +QN++ S R
Sbjct: 1 MGVSQIWEFLKPYLQDSRIPLRKFVIDFNKSQKRAPRIAIDAYGWLFECGFIQNIDISAR 60
Query: 47 PQT 49
++
Sbjct: 61 SRS 63
>SGD|S000002671 [details] [associations]
symbol:DIN7 "Mitochondrial nuclease functioning in DNA repair
and replication" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
SGD:S000002671 GO:GO:0005739 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006938 GO:GO:0004519 EMBL:Z70202
EMBL:Z68290 GO:GO:0004518 RefSeq:NP_010553.3 GeneID:851860
KEGG:sce:YDR267C EMBL:X90707 PIR:S61118 RefSeq:NP_010549.3
ProteinModelPortal:Q12086 SMR:Q12086 DIP:DIP-5214N IntAct:Q12086
MINT:MINT-493226 STRING:Q12086 EnsemblFungi:YDR263C GeneID:851856
KEGG:sce:YDR263C CYGD:YDR263c eggNOG:COG0258
GeneTree:ENSGT00510000047676 OrthoDB:EOG44QX8J NextBio:969788
Genevestigator:Q12086 GermOnline:YDR263C PANTHER:PTHR11081
SUPFAM:SSF47807 Uniprot:Q12086
Length = 430
Score = 126 (49.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 69/274 (25%), Positives = 107/274 (39%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV---NKSYRPQTDKLFLRGL 57
MG+ L L+ +K + L + + ID W+ + T+K +L+
Sbjct: 1 MGIPGLLPQLKRIQKQVSLKKYMYQTLAIDGYAWLHRASCACAFELVMNKPTNK-YLQFF 59
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSE 117
RL+ L L V DG +K T RR E K L + R N
Sbjct: 60 IKRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLENEMIAKKLWSAGN-RYNAMEY 118
Query: 118 FSCMI----KEAKAL--GLSL-GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
F + + AK + L +P + EA+ Q L L G S DSD+ +FG
Sbjct: 119 FQKSVDITPEMAKCIIDYCKLHSIPYIVAPFEADPQMVYLEKMGLIQGIISEDSDLLVFG 178
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIER-----KLG-FGRNSLITLALLLGSDYSQGVRGLG 224
+T+ L ++G + DD LG L L G DY+ G+ +G
Sbjct: 179 CKTLITK--LNDQGKALEISKDDFSALPENFPLGELSEQQFRNLVCLAGCDYTSGIWKVG 236
Query: 225 PESACQIVKSVGD--NVVLQRIASEGLSFVKRAK 256
+A +IVK + ++++Q +E L F K K
Sbjct: 237 VVTAMKIVKRYSEMKDILIQIERTEKLCFSKAFK 270
>DICTYBASE|DDB_G0294290 [details] [associations]
symbol:DDB_G0294290 "xeroderma pigmentosum group G
(XPG) family protein" species:44689 "Dictyostelium discoideum"
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 SMART:SM00485 dictyBase:DDB_G0294290 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
EMBL:AAFI02000262 RefSeq:XP_628749.1 ProteinModelPortal:Q54AQ1
EnsemblProtists:DDB0232365 GeneID:3385413 KEGG:ddi:DDB_G0294290
OMA:ENQNLIN Uniprot:Q54AQ1
Length = 977
Score = 134 (52.2 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 34/106 (32%), Positives = 53/106 (50%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR--PQTDKLFLRGLF 58
MGV LW++L+ ++ ++ L+ K + ID S WI K+ + P T+ L G F
Sbjct: 1 MGVPKLWELLQQSGTSIDINALEGKTLAIDASIWIHTFIRTLKNEKGDPMTNAPIL-GFF 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD-DKN 103
R+ L++L IFV DG +P +K T R Q+ +KN
Sbjct: 60 RRICKLLSLRVKPIFVFDGGVPYLKRRTIEERRKRRERAEQNIEKN 105
Score = 39 (18.8 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 256 KNSKKEGWSFKCNNKEESLNQEINVNGTDHS 286
KN+ K + K NN + N N N +++
Sbjct: 627 KNNNKNNKNNKNNNNNNNNNNNNNNNNNNNN 657
Score = 39 (18.8 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 309 DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
+ + ++++L + L + ++ + ++ E +E ++ KI E D +R N
Sbjct: 787 NEKLINQLLEEDLREQKEFSKIQSNNQKYYTEIENERLIRKILEEDQKRKNN 838
Score = 38 (18.4 bits), Expect = 0.00085, Sum P(3) = 0.00085
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 251 FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 286
F K N+K + NNK N N N +++
Sbjct: 615 FNKTNNNNKNNNKNNNKNNKNNKNNNNNNNNNNNNN 650
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 121 (47.7 bits), Expect = 0.00070, P = 0.00070
Identities = 61/269 (22%), Positives = 110/269 (40%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR----PQTDKLFLRG 56
MG++ L L+ + + L + + + ID W+ + + +Y TDK +L+
Sbjct: 1 MGIQGLLPQLKPIQNPVSLRRYEGEVLAIDGYAWLHRAA-CSCAYELAMGKPTDK-YLQF 58
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGS 116
R L V DG +K ST +R + E + L ++N
Sbjct: 59 FIKRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGE-KKNAMD 117
Query: 117 EFSCMIKEAKALGLSLGVPC-LEGVE------EAEAQCALLNLESLCDGCFSSDSDIFLF 169
F + + + C L G+ EA++Q L +++ G S DSD+ +F
Sbjct: 118 YFQKCVDITPEMAKCIICYCKLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVF 177
Query: 170 GARTVYRDIWLGERGYVVCYEM--DD---IERKLGFG---RNSLITLALLLGSDYSQGVR 221
G R + + Y C E+ D+ + +K G +IT+ L G DY+ G+
Sbjct: 178 GCRRLITKL----NDYGECLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSGCDYTNGIP 233
Query: 222 GLGPESACQIVKSVG--DNVVLQRIASEG 248
+G +A ++V+ + ++L I EG
Sbjct: 234 KVGLITAMKLVRRFNTIERIILS-IQREG 261
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 583 555 0.00098 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 82
No. of states in DFA: 622 (66 KB)
Total size of DFA: 319 KB (2163 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 44.24u 0.15s 44.39t Elapsed: 00:00:02
Total cpu time: 44.26u 0.15s 44.41t Elapsed: 00:00:02
Start: Sat May 11 09:58:02 2013 End: Sat May 11 09:58:04 2013